Query psy4705
Match_columns 164
No_of_seqs 116 out of 222
Neff 6.2
Searched_HMMs 46136
Date Fri Aug 16 23:45:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4705.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4705hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4151|consensus 99.4 2.1E-13 4.5E-18 126.8 6.5 121 15-149 466-586 (748)
2 PLN03200 cellulose synthase-in 99.1 4.5E-10 9.7E-15 114.1 11.9 150 3-156 116-285 (2102)
3 KOG4224|consensus 99.0 4.3E-09 9.2E-14 92.5 11.8 135 18-156 251-387 (550)
4 PLN03200 cellulose synthase-in 99.0 1.4E-09 3.1E-14 110.5 9.3 133 2-135 667-812 (2102)
5 KOG4224|consensus 99.0 1.5E-09 3.3E-14 95.3 6.9 149 3-155 143-302 (550)
6 KOG0166|consensus 98.7 3.2E-07 7E-12 83.3 12.5 154 2-159 126-293 (514)
7 cd00020 ARM Armadillo/beta-cat 98.6 2.1E-07 4.5E-12 66.0 7.9 117 14-134 3-120 (120)
8 PF05804 KAP: Kinesin-associat 98.5 1.1E-06 2.3E-11 82.9 10.4 136 4-146 308-452 (708)
9 PF05804 KAP: Kinesin-associat 98.2 1.1E-05 2.3E-10 76.3 11.1 139 2-148 265-412 (708)
10 cd00020 ARM Armadillo/beta-cat 98.2 6E-06 1.3E-10 58.3 6.8 99 55-156 2-102 (120)
11 PF04826 Arm_2: Armadillo-like 98.1 3.4E-05 7.4E-10 64.6 10.8 136 2-146 29-175 (254)
12 COG5064 SRP1 Karyopherin (impo 98.1 4.1E-05 8.8E-10 67.4 10.9 150 3-156 132-296 (526)
13 PF04826 Arm_2: Armadillo-like 97.3 0.0026 5.6E-08 53.3 10.4 131 15-154 9-143 (254)
14 PF00514 Arm: Armadillo/beta-c 97.2 0.0011 2.3E-08 39.9 4.8 40 49-88 1-40 (41)
15 KOG0166|consensus 97.0 0.0078 1.7E-07 55.2 10.4 151 2-155 211-374 (514)
16 PRK09687 putative lyase; Provi 96.9 0.0084 1.8E-07 50.7 9.5 28 104-134 223-250 (280)
17 PRK09687 putative lyase; Provi 96.8 0.02 4.3E-07 48.4 11.3 123 3-133 40-187 (280)
18 smart00185 ARM Armadillo/beta- 96.2 0.012 2.7E-07 34.2 4.5 39 50-88 2-40 (41)
19 COG5064 SRP1 Karyopherin (impo 96.0 0.072 1.6E-06 47.4 10.1 108 38-148 91-200 (526)
20 PF13646 HEAT_2: HEAT repeats; 95.9 0.025 5.4E-07 38.2 5.4 87 20-130 1-88 (88)
21 PF10508 Proteasom_PSMB: Prote 95.5 0.17 3.8E-06 46.0 10.9 132 18-156 77-213 (503)
22 KOG1048|consensus 95.4 0.15 3.2E-06 48.6 10.2 130 13-148 232-362 (717)
23 PF10508 Proteasom_PSMB: Prote 95.4 0.29 6.3E-06 44.6 11.9 141 12-157 113-255 (503)
24 PF13646 HEAT_2: HEAT repeats; 95.1 0.073 1.6E-06 35.9 5.5 72 2-85 16-88 (88)
25 KOG4199|consensus 94.9 0.26 5.7E-06 43.7 9.7 139 14-157 237-384 (461)
26 PF00514 Arm: Armadillo/beta-c 94.8 0.055 1.2E-06 32.3 3.8 38 10-48 4-41 (41)
27 KOG4151|consensus 94.6 0.058 1.3E-06 51.4 5.2 122 1-132 599-723 (748)
28 PF13513 HEAT_EZ: HEAT-like re 94.4 0.12 2.6E-06 32.4 4.9 55 33-87 1-55 (55)
29 PRK13800 putative oxidoreducta 94.2 0.86 1.9E-05 44.4 12.4 30 103-133 837-866 (897)
30 PF05536 Neurochondrin: Neuroc 94.2 0.21 4.6E-06 46.1 7.9 114 20-136 100-215 (543)
31 KOG2160|consensus 93.9 0.25 5.4E-06 43.3 7.3 120 14-137 120-243 (342)
32 KOG4199|consensus 93.9 0.35 7.5E-06 43.0 8.1 135 8-148 179-329 (461)
33 PF03224 V-ATPase_H_N: V-ATPas 93.7 0.36 7.8E-06 41.0 7.9 124 19-147 106-239 (312)
34 KOG0168|consensus 93.1 0.59 1.3E-05 45.6 8.8 123 5-133 231-363 (1051)
35 PF12717 Cnd1: non-SMC mitotic 92.6 1.3 2.8E-05 34.6 9.0 101 2-114 4-111 (178)
36 KOG1222|consensus 92.4 1.3 2.8E-05 41.3 9.7 69 2-73 361-438 (791)
37 smart00185 ARM Armadillo/beta- 91.7 0.27 5.9E-06 28.3 3.2 38 10-48 4-41 (41)
38 PRK13800 putative oxidoreducta 91.1 1.7 3.6E-05 42.4 9.7 47 2-49 758-805 (897)
39 KOG1222|consensus 90.7 0.58 1.3E-05 43.5 5.7 64 27-92 353-416 (791)
40 PF11701 UNC45-central: Myosin 90.5 1.5 3.3E-05 33.8 7.3 78 8-87 76-157 (157)
41 PF03224 V-ATPase_H_N: V-ATPas 90.5 1.2 2.6E-05 37.8 7.2 120 31-154 69-200 (312)
42 KOG2122|consensus 90.0 1.3 2.8E-05 45.8 7.8 110 36-148 211-340 (2195)
43 KOG4500|consensus 88.4 1.5 3.2E-05 40.3 6.4 120 31-156 236-367 (604)
44 KOG4500|consensus 88.2 4.4 9.5E-05 37.3 9.3 103 12-115 309-416 (604)
45 PF14664 RICTOR_N: Rapamycin-i 87.5 3.4 7.4E-05 36.5 8.2 107 2-114 41-157 (371)
46 COG1413 FOG: HEAT repeat [Ener 86.3 12 0.00025 31.5 10.5 106 3-133 60-177 (335)
47 PF13513 HEAT_EZ: HEAT-like re 85.5 2.1 4.5E-05 26.6 4.3 43 2-45 3-54 (55)
48 KOG2160|consensus 85.4 7.5 0.00016 34.2 9.0 103 32-137 96-199 (342)
49 PF01602 Adaptin_N: Adaptin N 84.2 7.1 0.00015 34.6 8.6 126 2-140 95-227 (526)
50 PF12031 DUF3518: Domain of un 83.5 8.6 0.00019 32.6 8.2 70 3-72 141-228 (257)
51 KOG1293|consensus 82.6 9.4 0.0002 36.3 8.9 125 3-133 394-532 (678)
52 KOG1048|consensus 80.8 5.8 0.00013 38.1 7.0 130 14-148 271-417 (717)
53 KOG2122|consensus 80.2 18 0.00039 38.0 10.3 112 2-116 367-493 (2195)
54 PF09759 Atx10homo_assoc: Spin 79.9 6.7 0.00015 28.6 5.7 58 35-92 2-62 (102)
55 COG5369 Uncharacterized conser 77.9 9.7 0.00021 36.0 7.3 143 3-147 448-607 (743)
56 PF12348 CLASP_N: CLASP N term 77.9 17 0.00037 28.7 8.0 86 2-87 110-204 (228)
57 KOG2973|consensus 77.9 17 0.00037 32.0 8.4 83 2-88 19-110 (353)
58 PF05536 Neurochondrin: Neuroc 77.8 29 0.00063 32.2 10.5 126 25-154 11-149 (543)
59 PF02985 HEAT: HEAT repeat; I 76.2 5.1 0.00011 22.3 3.3 28 20-48 2-29 (31)
60 PF01602 Adaptin_N: Adaptin N 75.8 10 0.00022 33.6 6.8 67 19-91 232-298 (526)
61 PF12031 DUF3518: Domain of un 70.3 18 0.00038 30.7 6.5 74 75-148 139-216 (257)
62 KOG2171|consensus 68.8 33 0.00073 34.6 8.9 98 29-133 259-376 (1075)
63 TIGR02270 conserved hypothetic 68.0 84 0.0018 28.2 10.8 25 63-87 150-174 (410)
64 KOG0168|consensus 66.9 18 0.00039 35.8 6.6 119 18-137 211-348 (1051)
65 PTZ00429 beta-adaptin; Provisi 66.8 1.1E+02 0.0023 29.9 11.8 49 1-50 155-210 (746)
66 KOG1789|consensus 66.1 30 0.00064 35.7 7.9 79 7-88 1803-1882(2235)
67 KOG0301|consensus 65.8 42 0.00091 32.3 8.6 104 31-138 600-708 (745)
68 COG1413 FOG: HEAT repeat [Ener 65.0 82 0.0018 26.3 10.6 118 2-133 90-241 (335)
69 KOG4646|consensus 64.9 12 0.00025 29.6 4.0 73 14-87 54-126 (173)
70 PF11698 V-ATPase_H_C: V-ATPas 61.5 34 0.00074 25.7 6.0 71 19-90 44-116 (119)
71 KOG3678|consensus 59.1 42 0.0009 31.6 7.1 102 32-137 235-339 (832)
72 PF08324 PUL: PUL domain; Int 57.9 30 0.00064 28.3 5.7 106 31-140 122-237 (268)
73 cd00256 VATPase_H VATPase_H, r 55.6 1.6E+02 0.0034 26.8 10.2 110 4-114 162-286 (429)
74 KOG1824|consensus 52.0 1.7E+02 0.0037 29.8 10.3 42 57-98 451-516 (1233)
75 smart00567 EZ_HEAT E-Z type HE 48.2 28 0.00061 18.8 2.8 22 1-23 2-23 (30)
76 KOG1293|consensus 47.5 1.1E+02 0.0024 29.4 8.1 89 1-90 434-534 (678)
77 PF12719 Cnd3: Nuclear condens 46.6 1.7E+02 0.0038 24.4 9.1 101 27-132 35-141 (298)
78 PF10165 Ric8: Guanine nucleot 46.2 61 0.0013 29.2 6.2 65 3-67 49-129 (446)
79 PF12348 CLASP_N: CLASP N term 46.1 1.4E+02 0.0031 23.3 8.6 96 17-118 93-190 (228)
80 KOG1242|consensus 45.6 1.7E+02 0.0037 27.7 9.0 128 2-137 232-367 (569)
81 cd00256 VATPase_H VATPase_H, r 44.7 2.4E+02 0.0053 25.6 10.8 130 18-156 53-196 (429)
82 PF08620 RPAP1_C: RPAP1-like, 40.8 42 0.0009 23.1 3.3 29 62-90 41-69 (73)
83 KOG2025|consensus 40.3 2E+02 0.0044 28.3 8.7 110 31-152 97-207 (892)
84 PF14664 RICTOR_N: Rapamycin-i 39.5 2.7E+02 0.0058 24.6 10.8 94 16-112 106-200 (371)
85 PTZ00429 beta-adaptin; Provisi 39.3 2.4E+02 0.0052 27.5 9.2 57 73-135 153-209 (746)
86 PF06025 DUF913: Domain of Unk 38.4 45 0.00098 29.5 4.0 35 36-70 337-371 (379)
87 TIGR02270 conserved hypothetic 37.6 3E+02 0.0066 24.6 9.6 25 62-86 119-143 (410)
88 KOG1789|consensus 36.7 80 0.0017 32.8 5.6 98 14-114 2043-2140(2235)
89 PF07208 DUF1414: Protein of u 35.8 35 0.00076 21.3 2.1 24 125-148 8-37 (44)
90 KOG2734|consensus 35.5 2.6E+02 0.0056 26.0 8.3 87 7-94 165-260 (536)
91 PF12755 Vac14_Fab1_bd: Vacuol 35.4 1.6E+02 0.0035 20.8 7.1 61 35-95 24-84 (97)
92 PF08216 CTNNBL: Catenin-beta- 33.6 90 0.0019 23.1 4.3 42 32-73 59-101 (108)
93 KOG3678|consensus 31.6 2.8E+02 0.006 26.3 7.9 71 17-88 263-335 (832)
94 KOG2973|consensus 29.7 2.2E+02 0.0048 25.2 6.7 66 30-95 255-320 (353)
95 PF05004 IFRD: Interferon-rela 28.3 3.8E+02 0.0082 22.9 8.0 44 66-114 92-139 (309)
96 TIGR01204 bioW 6-carboxyhexano 25.5 26 0.00056 29.3 0.3 15 150-164 117-132 (232)
97 KOG3036|consensus 25.0 4.5E+02 0.0098 22.7 8.2 90 2-94 141-250 (293)
98 KOG2759|consensus 24.7 1.3E+02 0.0029 27.5 4.6 41 50-90 399-439 (442)
99 KOG3036|consensus 24.6 3.4E+02 0.0073 23.4 6.7 57 36-92 142-200 (293)
100 PF09324 DUF1981: Domain of un 23.9 2.5E+02 0.0054 19.3 5.8 50 15-68 14-63 (86)
101 PF12755 Vac14_Fab1_bd: Vacuol 23.1 2.8E+02 0.006 19.6 5.7 31 18-49 27-57 (97)
102 KOG2171|consensus 22.0 8.7E+02 0.019 25.0 9.9 120 2-134 20-147 (1075)
103 PF05918 API5: Apoptosis inhib 21.9 6E+02 0.013 24.0 8.4 32 17-49 58-89 (556)
104 PRK01322 6-carboxyhexanoate--C 21.6 34 0.00074 28.8 0.3 12 153-164 129-140 (242)
105 PF08045 CDC14: Cell division 20.7 4.6E+02 0.01 22.1 6.9 79 33-114 105-186 (257)
106 KOG4646|consensus 20.3 4.4E+02 0.0096 20.9 7.4 64 26-89 24-87 (173)
No 1
>KOG4151|consensus
Probab=99.42 E-value=2.1e-13 Score=126.82 Aligned_cols=121 Identities=37% Similarity=0.434 Sum_probs=101.1
Q ss_pred cChhHHHHHHHhhcccCCHHHHHHHHHHHHHhccchhhHHHHHhcChHHHHHHHhhccchhhhhHHHHHHHHHhCcCCCC
Q psy4705 15 VSEDVIKIYEANKDKVESDNTRELLARILNALASQQELRGLMVQQGASKALIHLAHNGTVKGKRQAAQGLARLGITLNPE 94 (164)
Q Consensus 15 ~~~~vi~~l~v~l~k~~S~~~k~~~~~il~~Ls~~~~~R~~ivqqGai~~Ll~l~~~gt~~~~~~A~~ALakLlIs~nP~ 94 (164)
++.+..+.. ..+.++.+-+..|.++ |.++..|+..+|.||.+.|+.+...+++..|..+.|||+ . .
T Consensus 466 ~~~~~~~~~-~svakt~~~~~~E~~a------A~~K~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~--~-----~ 531 (748)
T KOG4151|consen 466 LSLDEDPSC-ESVAKTVSWAKNEYLA------AKEKYERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALA--G-----K 531 (748)
T ss_pred hccCcchhh-hHHHHHHHHHHHHHHh------hhhHHhcCccccccHHHHHHHHHHHhchHHHHHHHHHHh--h-----h
Confidence 334444443 2333444433444443 889999999999999999999999999999999999999 2 7
Q ss_pred cccCCCCcccchHHHHhccCCCcchHHHHHHHHHHHcccCCChHHHHHHHhccch
Q psy4705 95 VAFPGERSLEVVRPLLSLLHPEATALETFEGLMALCNLAAIGEKQRQRKKLNFRP 149 (164)
Q Consensus 95 l~f~~~~~~~av~pL~~LL~~~~~~l~~fEaLlALTNLAs~~~~~r~~Iv~~~~~ 149 (164)
+-|+|++++++++|+.++++++..++++||+|+|||||||+++..|++|+++.|.
T Consensus 532 i~f~~~~~~~v~~~~~s~~~~d~~~~en~E~L~altnLas~s~s~r~~i~ke~~~ 586 (748)
T KOG4151|consen 532 IDFPGERSYEVVKPLDSALHNDEKGLENFEALEALTNLASISESDRQKILKEKAL 586 (748)
T ss_pred cCCCCCchhhhhhhhcchhhhhHHHHHHHHHHHHhhcccCcchhhHHHHHHHhcc
Confidence 7899999999999999999999999999999999999999999999999999884
No 2
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.12 E-value=4.5e-10 Score=114.07 Aligned_cols=150 Identities=19% Similarity=0.178 Sum_probs=120.5
Q ss_pred hHHHHHHHHHHhcC-------------hhHHHHHHHhhcccCC--HH-HHHHHHHHHHHhccchhhHH-HHHhcChHHHH
Q psy4705 3 RRAATQTMTNMIVS-------------EDVIKIYEANKDKVES--DN-TRELLARILNALASQQELRG-LMVQQGASKAL 65 (164)
Q Consensus 3 ~~aa~~~l~nli~~-------------~~vi~~l~v~l~k~~S--~~-~k~~~~~il~~Ls~~~~~R~-~ivqqGai~~L 65 (164)
|.+|+.+++++..+ +|++|.+ +.+.+.++ +. .++.++.+|++||..++++. .+++.|+++.|
T Consensus 116 Ke~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~L-v~lL~~gsk~d~~L~~~Av~AL~nLs~~~en~~~~IIeaGaVp~L 194 (2102)
T PLN03200 116 QKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSL-WDQLQPGNKQDKVVEGLLTGALRNLCGSTDGFWSATLEAGGVDIL 194 (2102)
T ss_pred HHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHH-HHHHhCCchhhHHHHHHHHHHHHHHhcCccchHHHHHHcCCHHHH
Confidence 77899999988543 6788998 78888875 33 56777889999999998775 56899999999
Q ss_pred HHHhhccchhhhhHHHHHHHHHhCcC-CCCcccCCCCcccchHHHHhccCCCcchHHHHHHHHHHHcccCCChHHHHHHH
Q psy4705 66 IHLAHNGTVKGKRQAAQGLARLGITL-NPEVAFPGERSLEVVRPLLSLLHPEATALETFEGLMALCNLAAIGEKQRQRKK 144 (164)
Q Consensus 66 l~l~~~gt~~~~~~A~~ALakLlIs~-nP~l~f~~~~~~~av~pL~~LL~~~~~~l~~fEaLlALTNLAs~~~~~r~~Iv 144 (164)
+++..++.+..+..|+.+|++++-+. +|.... ...++||+|+.+|+.+.+..-+++|..||+||++.+++.|+.|+
T Consensus 195 V~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aV---IeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~e~r~~Iv 271 (2102)
T PLN03200 195 VKLLSSGNSDAQANAASLLARLMMAFESSISKV---LDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQSKEAKQAIA 271 (2102)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHH---HHCCCHHHHHHHHccCCChHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 99988888888889999999997653 333221 13569999999997444445689999999999999889999999
Q ss_pred hccch--hHhhhhc
Q psy4705 145 LNFRP--FVSCLGG 156 (164)
Q Consensus 145 ~~~~~--~~~~l~~ 156 (164)
+.|+. |++++.+
T Consensus 272 ~aGgIp~LI~lL~s 285 (2102)
T PLN03200 272 DAGGIPALINATVA 285 (2102)
T ss_pred HCCCHHHHHHHHhC
Confidence 99884 7877764
No 3
>KOG4224|consensus
Probab=99.01 E-value=4.3e-09 Score=92.50 Aligned_cols=135 Identities=19% Similarity=0.157 Sum_probs=106.7
Q ss_pred hHHHHHHHhhcccCCHHHHHHHHHHHHHhccchhhHHHHHhcChHHHHHHHhhccchhhhhHHHHHHHHHhCcCCCCccc
Q psy4705 18 DVIKIYEANKDKVESDNTRELLARILNALASQQELRGLMVQQGASKALIHLAHNGTVKGKRQAAQGLARLGITLNPEVAF 97 (164)
Q Consensus 18 ~vi~~l~v~l~k~~S~~~k~~~~~il~~Ls~~~~~R~~ivqqGai~~Ll~l~~~gt~~~~~~A~~ALakLlIs~nP~l~f 97 (164)
++++.+ +.+..++|+.+|.+++-.|.+|+.|.+...+|++.|+++.++++.++..-+.-.-....+.+|.|+.-.+..+
T Consensus 251 ~lv~~L-v~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI 329 (550)
T KOG4224|consen 251 KLVPAL-VDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVLI 329 (550)
T ss_pred chHHHH-HHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcccce
Confidence 377776 8889999999999999999999999999999999999999999886543322222245666777777665543
Q ss_pred CCCCcccchHHHHhccCCCcchHHHHHHHHHHHcccCCChHHHHHHHhccch--hHhhhhc
Q psy4705 98 PGERSLEVVRPLLSLLHPEATALETFEGLMALCNLAAIGEKQRQRKKLNFRP--FVSCLGG 156 (164)
Q Consensus 98 ~~~~~~~av~pL~~LL~~~~~~l~~fEaLlALTNLAs~~~~~r~~Iv~~~~~--~~~~l~~ 156 (164)
. ...-.+||+.||+-..++.-+..|...|-|||..++..++.|...|.. ++|.++.
T Consensus 330 ~---dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD 387 (550)
T KOG4224|consen 330 A---DAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLD 387 (550)
T ss_pred e---cccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhc
Confidence 2 234689999999966677788999999999999888778888877664 7777664
No 4
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=98.99 E-value=1.4e-09 Score=110.55 Aligned_cols=133 Identities=25% Similarity=0.263 Sum_probs=115.7
Q ss_pred hhHHHHHHHHHH-----------hcChhHHHHHHHhhcccCCHHHHHHHHHHHHHhccchhhHHHHHhcChHHHHHHHhh
Q psy4705 2 LRRAATQTMTNM-----------IVSEDVIKIYEANKDKVESDNTRELLARILNALASQQELRGLMVQQGASKALIHLAH 70 (164)
Q Consensus 2 ~~~aa~~~l~nl-----------i~~~~vi~~l~v~l~k~~S~~~k~~~~~il~~Ls~~~~~R~~ivqqGai~~Ll~l~~ 70 (164)
.++.|+.++.|+ ++..|++|+| +++.++++..+++.+...|.+++.+.+.+.++.+.|++.+|+++.+
T Consensus 667 v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL-~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr 745 (2102)
T PLN03200 667 VATQSARALAALSRSIKENRKVSYAAEDAIKPL-IKLAKSSSIEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLR 745 (2102)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHH-HHHHhCCChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHH
Confidence 367788888877 4568899998 8999999999999999999999999999999999999999999999
Q ss_pred ccchhhhhHHHHHHHHHhCcCCCCcccCCCC-cccchHHHHhccC-CCcchHHHHHHHHHHHcccCC
Q psy4705 71 NGTVKGKRQAAQGLARLGITLNPEVAFPGER-SLEVVRPLLSLLH-PEATALETFEGLMALCNLAAI 135 (164)
Q Consensus 71 ~gt~~~~~~A~~ALakLlIs~nP~l~f~~~~-~~~av~pL~~LL~-~~~~~l~~fEaLlALTNLAs~ 135 (164)
+|++++|..|++||..|+-......+|.++. ...+|.||+++|. .|.+..+.+|+|-+|.+|+-.
T Consensus 746 ~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~~~~~al~~l~~l~~~ 812 (2102)
T PLN03200 746 EGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLDSSATSEALEALALLART 812 (2102)
T ss_pred hCChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcchhhHHHHHHHHHHHHhh
Confidence 9999999999999999988777666664442 4569999999997 345668888999999999865
No 5
>KOG4224|consensus
Probab=98.95 E-value=1.5e-09 Score=95.28 Aligned_cols=149 Identities=16% Similarity=0.219 Sum_probs=117.5
Q ss_pred hHHHHHHHHHH---------hcChhHHHHHHHhhcccCCHHHHHHHHHHHHHhccchhhHHHHHhcChHHHHHHHhhccc
Q psy4705 3 RRAATQTMTNM---------IVSEDVIKIYEANKDKVESDNTRELLARILNALASQQELRGLMVQQGASKALIHLAHNGT 73 (164)
Q Consensus 3 ~~aa~~~l~nl---------i~~~~vi~~l~v~l~k~~S~~~k~~~~~il~~Ls~~~~~R~~ivqqGai~~Ll~l~~~gt 73 (164)
++.|+.|++|| +...|...++ ..+.|+.-.+++..+.-+|+++++..++|..+|..||++.|+++++++.
T Consensus 143 qcnaVgCitnLaT~d~nk~kiA~sGaL~pl-trLakskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d 221 (550)
T KOG4224|consen 143 QCNAVGCITNLATFDSNKVKIARSGALEPL-TRLAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGD 221 (550)
T ss_pred Eeeehhhhhhhhccccchhhhhhccchhhh-HhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCC
Confidence 57889999999 4456666666 5688888899999999999999999999999999999999999999888
Q ss_pred hhhhhHHHHHHHHHhCcCCCCcccCCCCcccchHHHHhccCCCcchHHHHHHHHHHHcccCCChHHHHHHHhccc-h-hH
Q psy4705 74 VKGKRQAAQGLARLGITLNPEVAFPGERSLEVVRPLLSLLHPEATALETFEGLMALCNLAAIGEKQRQRKKLNFR-P-FV 151 (164)
Q Consensus 74 ~~~~~~A~~ALakLlIs~nP~l~f~~~~~~~av~pL~~LL~~~~~~l~~fEaLlALTNLAs~~~~~r~~Iv~~~~-~-~~ 151 (164)
...+..+.+|+.+|.++.-..-... +.--..||.|+.|+. +++..-+..|-+||.||||. ++....|++.|. | ++
T Consensus 222 ~dvqyycttaisnIaVd~~~Rk~La-qaep~lv~~Lv~Lmd-~~s~kvkcqA~lALrnlasd-t~Yq~eiv~ag~lP~lv 298 (550)
T KOG4224|consen 222 LDVQYYCTTAISNIAVDRRARKILA-QAEPKLVPALVDLMD-DGSDKVKCQAGLALRNLASD-TEYQREIVEAGSLPLLV 298 (550)
T ss_pred hhHHHHHHHHhhhhhhhHHHHHHHH-hcccchHHHHHHHHh-CCChHHHHHHHHHHhhhccc-chhhhHHHhcCCchHHH
Confidence 7777778899988876644321110 000127899999998 77778889999999999985 566778888776 3 56
Q ss_pred hhhh
Q psy4705 152 SCLG 155 (164)
Q Consensus 152 ~~l~ 155 (164)
+.|+
T Consensus 299 ~Llq 302 (550)
T KOG4224|consen 299 ELLQ 302 (550)
T ss_pred HHHh
Confidence 5553
No 6
>KOG0166|consensus
Probab=98.67 E-value=3.2e-07 Score=83.33 Aligned_cols=154 Identities=23% Similarity=0.238 Sum_probs=121.9
Q ss_pred hhHHHHHHHHHH----------hcChhHHHHHHHhhcccCCHHHHHHHHHHHHHhccc-hhhHHHHHhcChHHHHHHHhh
Q psy4705 2 LRRAATQTMTNM----------IVSEDVIKIYEANKDKVESDNTRELLARILNALASQ-QELRGLMVQQGASKALIHLAH 70 (164)
Q Consensus 2 ~~~aa~~~l~nl----------i~~~~vi~~l~v~l~k~~S~~~k~~~~~il~~Ls~~-~~~R~~ivqqGai~~Ll~l~~ 70 (164)
++-.|+-++.|. ++..|.+|.| +.+..+.++.++|+++-.|.|++.| +..|-.+...|++.+|+.+..
T Consensus 126 lq~eAAWaLTnIAsgtse~T~~vv~agavp~f-i~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~ 204 (514)
T KOG0166|consen 126 LQFEAAWALTNIASGTSEQTKVVVDAGAVPIF-IQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLN 204 (514)
T ss_pred HHHHHHHHHHHHhcCchhhccccccCCchHHH-HHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhc
Confidence 456677788887 7788999999 8999999999999999999999999 679999999999999999765
Q ss_pred ccc-hhhhhHHHHHHHHHhCcCCCCcccCCCCcccchHHHHhccCCCcchHHHHHHHHHHHcccCCChHHHHHHHhccch
Q psy4705 71 NGT-VKGKRQAAQGLARLGITLNPEVAFPGERSLEVVRPLLSLLHPEATALETFEGLMALCNLAAIGEKQRQRKKLNFRP 149 (164)
Q Consensus 71 ~gt-~~~~~~A~~ALakLlIs~nP~l~f~~~~~~~av~pL~~LL~~~~~~l~~fEaLlALTNLAs~~~~~r~~Iv~~~~~ 149 (164)
... ....+.+..+|.+++...||.=-|. ....++|-|..||+....... -.|..||.+|+..+++.=+.++..|..
T Consensus 205 ~~~~~~~lRn~tW~LsNlcrgk~P~P~~~--~v~~iLp~L~~ll~~~D~~Vl-~Da~WAlsyLsdg~ne~iq~vi~~gvv 281 (514)
T KOG0166|consen 205 KSDKLSMLRNATWTLSNLCRGKNPSPPFD--VVAPILPALLRLLHSTDEEVL-TDACWALSYLTDGSNEKIQMVIDAGVV 281 (514)
T ss_pred cccchHHHHHHHHHHHHHHcCCCCCCcHH--HHHHHHHHHHHHHhcCCHHHH-HHHHHHHHHHhcCChHHHHHHHHccch
Confidence 544 3677889999999999999986664 244577888888884443333 559999999987666655555555552
Q ss_pred --hHhhhhcccc
Q psy4705 150 --FVSCLGGVVV 159 (164)
Q Consensus 150 --~~~~l~~~~~ 159 (164)
+|++|+--.+
T Consensus 282 ~~LV~lL~~~~~ 293 (514)
T KOG0166|consen 282 PRLVDLLGHSSP 293 (514)
T ss_pred HHHHHHHcCCCc
Confidence 8888875443
No 7
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=98.62 E-value=2.1e-07 Score=65.98 Aligned_cols=117 Identities=18% Similarity=0.137 Sum_probs=93.2
Q ss_pred hcChhHHHHHHHhhcccCCHHHHHHHHHHHHHhccc-hhhHHHHHhcChHHHHHHHhhccchhhhhHHHHHHHHHhCcCC
Q psy4705 14 IVSEDVIKIYEANKDKVESDNTRELLARILNALASQ-QELRGLMVQQGASKALIHLAHNGTVKGKRQAAQGLARLGITLN 92 (164)
Q Consensus 14 i~~~~vi~~l~v~l~k~~S~~~k~~~~~il~~Ls~~-~~~R~~ivqqGai~~Ll~l~~~gt~~~~~~A~~ALakLlIs~n 92 (164)
++..|+++.+ ..+.+.+++..|+.+...+.+++.+ ++.+..++++|+++.|+++.....+..+..|..+|.+|+-+..
T Consensus 3 ~~~~~~i~~l-~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~ 81 (120)
T cd00020 3 VIQAGGLPAL-VSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE 81 (120)
T ss_pred HHHcCChHHH-HHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH
Confidence 4567889988 6788888899999999999999999 8899999999999999998887778888899999999976543
Q ss_pred CCcccCCCCcccchHHHHhccCCCcchHHHHHHHHHHHcccC
Q psy4705 93 PEVAFPGERSLEVVRPLLSLLHPEATALETFEGLMALCNLAA 134 (164)
Q Consensus 93 P~l~f~~~~~~~av~pL~~LL~~~~~~l~~fEaLlALTNLAs 134 (164)
+...+- ...+.++.|+.+++ +.+..-.-.++-+|+||++
T Consensus 82 ~~~~~~--~~~g~l~~l~~~l~-~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 82 DNKLIV--LEAGGVPKLVNLLD-SSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHH--HHCCChHHHHHHHh-cCCHHHHHHHHHHHHHhhC
Confidence 322110 12347899999998 4455555678999999863
No 8
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=98.47 E-value=1.1e-06 Score=82.89 Aligned_cols=136 Identities=18% Similarity=0.191 Sum_probs=106.0
Q ss_pred HHHHHHHHHH---------hcChhHHHHHHHhhcccCCHHHHHHHHHHHHHhccchhhHHHHHhcChHHHHHHHhhccch
Q psy4705 4 RAATQTMTNM---------IVSEDVIKIYEANKDKVESDNTRELLARILNALASQQELRGLMVQQGASKALIHLAHNGTV 74 (164)
Q Consensus 4 ~aa~~~l~nl---------i~~~~vi~~l~v~l~k~~S~~~k~~~~~il~~Ls~~~~~R~~ivqqGai~~Ll~l~~~gt~ 74 (164)
-+++..+.+| +...|+++.+ ..+.+++++...+.+.++|+|||.|++.|..+++.|.++.|+++..+.
T Consensus 308 il~v~fLkkLSi~~ENK~~m~~~giV~kL-~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~-- 384 (708)
T PF05804_consen 308 ILAVTFLKKLSIFKENKDEMAESGIVEKL-LKLLPSENEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDP-- 384 (708)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHcCCHHHH-HHHhcCCCHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCC--
Confidence 3566666666 5667889987 788999999999999999999999999999999999999999988753
Q ss_pred hhhhHHHHHHHHHhCcCCCCcccCCCCcccchHHHHhccCCCcchHHHHHHHHHHHcccCCChHHHHHHHhc
Q psy4705 75 KGKRQAAQGLARLGITLNPEVAFPGERSLEVVRPLLSLLHPEATALETFEGLMALCNLAAIGEKQRQRKKLN 146 (164)
Q Consensus 75 ~~~~~A~~ALakLlIs~nP~l~f~~~~~~~av~pL~~LL~~~~~~l~~fEaLlALTNLAs~~~~~r~~Iv~~ 146 (164)
..+..+...|.+|+........|.. .++||.++.++-..++....-|++-.+.|||.. ....+.|.+.
T Consensus 385 ~~~~val~iLy~LS~dd~~r~~f~~---TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~-~rnaqlm~~g 452 (708)
T PF05804_consen 385 NFREVALKILYNLSMDDEARSMFAY---TDCIPQLMQMLLENSEEEVQLELIALLINLALN-KRNAQLMCEG 452 (708)
T ss_pred chHHHHHHHHHHhccCHhhHHHHhh---cchHHHHHHHHHhCCCccccHHHHHHHHHHhcC-HHHHHHHHhc
Confidence 3445688999999887777777853 358999999554233333355788899999875 4555666653
No 9
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=98.23 E-value=1.1e-05 Score=76.29 Aligned_cols=139 Identities=19% Similarity=0.192 Sum_probs=108.8
Q ss_pred hhHHHHHHHHHH---------hcChhHHHHHHHhhcccCCHHHHHHHHHHHHHhccchhhHHHHHhcChHHHHHHHhhcc
Q psy4705 2 LRRAATQTMTNM---------IVSEDVIKIYEANKDKVESDNTRELLARILNALASQQELRGLMVQQGASKALIHLAHNG 72 (164)
Q Consensus 2 ~~~aa~~~l~nl---------i~~~~vi~~l~v~l~k~~S~~~k~~~~~il~~Ls~~~~~R~~ivqqGai~~Ll~l~~~g 72 (164)
|-|++-..+.|+ +++.|.++.+ +.+...++....-.+..+|-.||-.++++..++++|++..|..+....
T Consensus 265 Llrv~~~lLlNLAed~~ve~kM~~~~iV~~L-v~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~ 343 (708)
T PF05804_consen 265 LLRVAFYLLLNLAEDPRVELKMVNKGIVSLL-VKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSE 343 (708)
T ss_pred HHHHHHHHHHHHhcChHHHHHHHhcCCHHHH-HHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCC
Confidence 346777788888 5667788887 788888999999999999999999999999999999999999998887
Q ss_pred chhhhhHHHHHHHHHhCcCCCCcccCCCCcccchHHHHhccCCCcchHHHHHHHHHHHcccCCChHHHHHHHhccc
Q psy4705 73 TVKGKRQAAQGLARLGITLNPEVAFPGERSLEVVRPLLSLLHPEATALETFEGLMALCNLAAIGEKQRQRKKLNFR 148 (164)
Q Consensus 73 t~~~~~~A~~ALakLlIs~nP~l~f~~~~~~~av~pL~~LL~~~~~~l~~fEaLlALTNLAs~~~~~r~~Iv~~~~ 148 (164)
.......|.+.|.+++.+.+-...+ ...+.||+|+.||. +.+.. .-++-.|-|| |.+|+.|..+.....
T Consensus 344 ~~~l~~~aLrlL~NLSfd~~~R~~m---V~~GlIPkLv~LL~-d~~~~--~val~iLy~L-S~dd~~r~~f~~Tdc 412 (708)
T PF05804_consen 344 NEDLVNVALRLLFNLSFDPELRSQM---VSLGLIPKLVELLK-DPNFR--EVALKILYNL-SMDDEARSMFAYTDC 412 (708)
T ss_pred CHHHHHHHHHHHHHhCcCHHHHHHH---HHCCCcHHHHHHhC-CCchH--HHHHHHHHHh-ccCHhhHHHHhhcch
Confidence 7777788999999994444432222 24569999999998 44322 2378888999 556777777766544
No 10
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=98.20 E-value=6e-06 Score=58.35 Aligned_cols=99 Identities=24% Similarity=0.172 Sum_probs=75.4
Q ss_pred HHHhcChHHHHHHHhhccchhhhhHHHHHHHHHhCcCCCCcccCCCCcccchHHHHhccCCCcchHHHHHHHHHHHcccC
Q psy4705 55 LMVQQGASKALIHLAHNGTVKGKRQAAQGLARLGITLNPEVAFPGERSLEVVRPLLSLLHPEATALETFEGLMALCNLAA 134 (164)
Q Consensus 55 ~ivqqGai~~Ll~l~~~gt~~~~~~A~~ALakLlIs~nP~l~f~~~~~~~av~pL~~LL~~~~~~l~~fEaLlALTNLAs 134 (164)
+++++|+++.|+++..++.+..+..|..+|+++....++...+- ...+++++|+.++. +.+..-...++.+|+||+.
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~--~~~~~i~~l~~~l~-~~~~~v~~~a~~~L~~l~~ 78 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAV--VEAGGLPALVQLLK-SEDEEVVKAALWALRNLAA 78 (120)
T ss_pred hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHH--HHCCChHHHHHHHh-CCCHHHHHHHHHHHHHHcc
Confidence 57899999999998888888899999999999977643332111 12479999999998 4555566789999999998
Q ss_pred CChHHHHHHHhccch--hHhhhhc
Q psy4705 135 IGEKQRQRKKLNFRP--FVSCLGG 156 (164)
Q Consensus 135 ~~~~~r~~Iv~~~~~--~~~~l~~ 156 (164)
.+++.+..+.+.+.. ++++|..
T Consensus 79 ~~~~~~~~~~~~g~l~~l~~~l~~ 102 (120)
T cd00020 79 GPEDNKLIVLEAGGVPKLVNLLDS 102 (120)
T ss_pred CcHHHHHHHHHCCChHHHHHHHhc
Confidence 876777777776653 6666654
No 11
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=98.12 E-value=3.4e-05 Score=64.65 Aligned_cols=136 Identities=17% Similarity=0.118 Sum_probs=97.7
Q ss_pred hhHHHHHHHHHH---------hcChhHHHHHHHhhcccCCHHHHHHHHHHHHHhccchhhHHHHHhcChHHHHHHHhhcc
Q psy4705 2 LRRAATQTMTNM---------IVSEDVIKIYEANKDKVESDNTRELLARILNALASQQELRGLMVQQGASKALIHLAHNG 72 (164)
Q Consensus 2 ~~~aa~~~l~nl---------i~~~~vi~~l~v~l~k~~S~~~k~~~~~il~~Ls~~~~~R~~ivqqGai~~Ll~l~~~g 72 (164)
+++.|.-+|.|. +-.-|+++.+ ..+..++++.+|+.+...+.|++.+.+++..|-. -+..+++...+.
T Consensus 29 i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI-~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~--~i~~Vc~~~~s~ 105 (254)
T PF04826_consen 29 IQEKALIALGNSAAFPFNQDIIRDLGGISLI-GSLLNDPNPSVREKALNALNNLSVNDENQEQIKM--YIPQVCEETVSS 105 (254)
T ss_pred HHHHHHHHHHhhccChhHHHHHHHcCCHHHH-HHHcCCCChHHHHHHHHHHHhcCCChhhHHHHHH--HHHHHHHHHhcC
Confidence 344555555555 4456888887 7889999999999999999999999999998732 355555532222
Q ss_pred --chhhhhHHHHHHHHHhCcCCCCcccCCCCcccchHHHHhccCCCcchHHHHHHHHHHHcccCCChHHHHHHHhc
Q psy4705 73 --TVKGKRQAAQGLARLGITLNPEVAFPGERSLEVVRPLLSLLHPEATALETFEGLMALCNLAAIGEKQRQRKKLN 146 (164)
Q Consensus 73 --t~~~~~~A~~ALakLlIs~nP~l~f~~~~~~~av~pL~~LL~~~~~~l~~fEaLlALTNLAs~~~~~r~~Iv~~ 146 (164)
.......+.++|.++.++.+-...+ .+.|+.|+.||. .++..-++.+|-.|.||+..++-.|.-+-.+
T Consensus 106 ~lns~~Q~agLrlL~nLtv~~~~~~~l-----~~~i~~ll~LL~-~G~~~~k~~vLk~L~nLS~np~~~~~Ll~~q 175 (254)
T PF04826_consen 106 PLNSEVQLAGLRLLTNLTVTNDYHHML-----ANYIPDLLSLLS-SGSEKTKVQVLKVLVNLSENPDMTRELLSAQ 175 (254)
T ss_pred CCCCHHHHHHHHHHHccCCCcchhhhH-----HhhHHHHHHHHH-cCChHHHHHHHHHHHHhccCHHHHHHHHhcc
Confidence 2344466899999997776654444 347899999998 5677778999999999987655444444444
No 12
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=98.08 E-value=4.1e-05 Score=67.38 Aligned_cols=150 Identities=19% Similarity=0.188 Sum_probs=116.5
Q ss_pred hHHHHHHHHHH----------hcChhHHHHHHHhhcccCCHHHHHHHHHHHHHhccch-hhHHHHHhcChHHHHHHHhhc
Q psy4705 3 RRAATQTMTNM----------IVSEDVIKIYEANKDKVESDNTRELLARILNALASQQ-ELRGLMVQQGASKALIHLAHN 71 (164)
Q Consensus 3 ~~aa~~~l~nl----------i~~~~vi~~l~v~l~k~~S~~~k~~~~~il~~Ls~~~-~~R~~ivqqGai~~Ll~l~~~ 71 (164)
+=-|+=++.|. ++..|.+|.| +.+..++++.+|||++-.|.|++.|. ..|--+.|.|++.+++++..+
T Consensus 132 qfEAaWalTNiaSGtt~QTkvVvd~~AVPlf-iqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~s 210 (526)
T COG5064 132 QFEAAWALTNIASGTTQQTKVVVDAGAVPLF-IQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLS 210 (526)
T ss_pred HHHHHHHHhhhccCcccceEEEEeCCchHHH-HHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHh
Confidence 33455555665 6778999999 89999999999999999999999995 689999999999999998765
Q ss_pred cch--hhhhHHHHHHHHHhCcCCCCcccCCCCcccchHHHHhccCCCcchHHHHHHHHHHHcccCCChHHHHHHHhccch
Q psy4705 72 GTV--KGKRQAAQGLARLGITLNPEVAFPGERSLEVVRPLLSLLHPEATALETFEGLMALCNLAAIGEKQRQRKKLNFRP 149 (164)
Q Consensus 72 gt~--~~~~~A~~ALakLlIs~nP~l~f~~~~~~~av~pL~~LL~~~~~~l~~fEaLlALTNLAs~~~~~r~~Iv~~~~~ 149 (164)
.-. +.-+.+...|.+++--.||.=-.. .+..++|.|..|+- +.+..-.-.|.-|+.=|+..+.+.-+.|+..|.+
T Consensus 211 s~~~ismlRn~TWtLSNlcRGknP~P~w~--~isqalpiL~KLiy-s~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~ 287 (526)
T COG5064 211 SAIHISMLRNATWTLSNLCRGKNPPPDWS--NISQALPILAKLIY-SRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIP 287 (526)
T ss_pred ccchHHHHHHhHHHHHHhhCCCCCCCchH--HHHHHHHHHHHHHh-hcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCc
Confidence 544 445678999999999999863322 23448999999997 4444444557788888876666777778877775
Q ss_pred --hHhhhhc
Q psy4705 150 --FVSCLGG 156 (164)
Q Consensus 150 --~~~~l~~ 156 (164)
++|.|.-
T Consensus 288 ~RLvElLs~ 296 (526)
T COG5064 288 GRLVELLSH 296 (526)
T ss_pred HHHHHHhcC
Confidence 9998864
No 13
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=97.33 E-value=0.0026 Score=53.35 Aligned_cols=131 Identities=14% Similarity=0.109 Sum_probs=93.6
Q ss_pred cChhHHHHHHHhhccc-CCHHHHHHHHHHHHHhccchhhHHHHHhcChHHHHHHHhhccchhhhhHHHHHHHHHhCcCCC
Q psy4705 15 VSEDVIKIYEANKDKV-ESDNTRELLARILNALASQQELRGLMVQQGASKALIHLAHNGTVKGKRQAAQGLARLGITLNP 93 (164)
Q Consensus 15 ~~~~vi~~l~v~l~k~-~S~~~k~~~~~il~~Ls~~~~~R~~ivqqGai~~Ll~l~~~gt~~~~~~A~~ALakLlIs~nP 93 (164)
.+.+-++.+ +++.+. .-+..++.+.-++.+.+..+.++..+.+-||+..+.++..+..+..|..|..+|.++..+...
T Consensus 9 l~~~~l~~L-l~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en 87 (254)
T PF04826_consen 9 LEAQELQKL-LCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDEN 87 (254)
T ss_pred cCHHHHHHH-HHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhh
Confidence 456667777 566654 458889999999999999999999999999999999999888889999999999999766543
Q ss_pred CcccCCCCcccchHHHHhccC--CCcchHHHHHHHHHHHcccCCChHHHHHHHhccc-hhHhhh
Q psy4705 94 EVAFPGERSLEVVRPLLSLLH--PEATALETFEGLMALCNLAAIGEKQRQRKKLNFR-PFVSCL 154 (164)
Q Consensus 94 ~l~f~~~~~~~av~pL~~LL~--~~~~~l~~fEaLlALTNLAs~~~~~r~~Iv~~~~-~~~~~l 154 (164)
.... ..-|+.+++.+- +..+..| ..+|.+|+||+-. ++.+..+ ..+. .+..+|
T Consensus 88 ~~~I-----k~~i~~Vc~~~~s~~lns~~Q-~agLrlL~nLtv~-~~~~~~l-~~~i~~ll~LL 143 (254)
T PF04826_consen 88 QEQI-----KMYIPQVCEETVSSPLNSEVQ-LAGLRLLTNLTVT-NDYHHML-ANYIPDLLSLL 143 (254)
T ss_pred HHHH-----HHHHHHHHHHHhcCCCCCHHH-HHHHHHHHccCCC-cchhhhH-HhhHHHHHHHH
Confidence 3322 224666666332 2234454 5799999999644 5444444 3333 244444
No 14
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=97.18 E-value=0.0011 Score=39.93 Aligned_cols=40 Identities=23% Similarity=0.302 Sum_probs=36.6
Q ss_pred chhhHHHHHhcChHHHHHHHhhccchhhhhHHHHHHHHHh
Q psy4705 49 QQELRGLMVQQGASKALIHLAHNGTVKGKRQAAQGLARLG 88 (164)
Q Consensus 49 ~~~~R~~ivqqGai~~Ll~l~~~gt~~~~~~A~~ALakLl 88 (164)
+++++..+++.|+++.|+.+.+...++.+..|+.||.+|+
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 4788999999999999999999888889999999999985
No 15
>KOG0166|consensus
Probab=96.97 E-value=0.0078 Score=55.18 Aligned_cols=151 Identities=15% Similarity=0.127 Sum_probs=113.8
Q ss_pred hhHHHHHHHHHHhcCh----------hHHHHHHHhhcccCCHHHHHHHHHHHHHhccc-hhhHHHHHhcChHHHHHHHhh
Q psy4705 2 LRRAATQTMTNMIVSE----------DVIKIYEANKDKVESDNTRELLARILNALASQ-QELRGLMVQQGASKALIHLAH 70 (164)
Q Consensus 2 ~~~aa~~~l~nli~~~----------~vi~~l~v~l~k~~S~~~k~~~~~il~~Ls~~-~~~R~~ivqqGai~~Ll~l~~ 70 (164)
+.|.+|=++.|++-.. ..+|.+ ..+..+.-+.+..-+.-++-+|+.. .+....++..|.++-|+++..
T Consensus 211 ~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L-~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~ 289 (514)
T KOG0166|consen 211 MLRNATWTLSNLCRGKNPSPPFDVVAPILPAL-LRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLG 289 (514)
T ss_pred HHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHH-HHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHc
Confidence 4688999999998775 234444 5667777788888888899999955 567788888999999999888
Q ss_pred ccchhhhhHHHHHHHHHhCcCCCCcccCCCCcccchHHHHhccCCCcchHHHHHHHHHHHcccCCChHHHHHHHhccc-h
Q psy4705 71 NGTVKGKRQAAQGLARLGITLNPEVAFPGERSLEVVRPLLSLLHPEATALETFEGLMALCNLAAIGEKQRQRKKLNFR-P 149 (164)
Q Consensus 71 ~gt~~~~~~A~~ALakLlIs~nP~l~f~~~~~~~av~pL~~LL~~~~~~l~~fEaLlALTNLAs~~~~~r~~Iv~~~~-~ 149 (164)
.........|.+++.+|..-++-....- ...+++|.|..|+..+.....+-||.-.+.|++..+.+..+.|+..+. +
T Consensus 290 ~~~~~v~~PaLRaiGNIvtG~d~QTq~v--i~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p 367 (514)
T KOG0166|consen 290 HSSPKVVTPALRAIGNIVTGSDEQTQVV--INSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIP 367 (514)
T ss_pred CCCcccccHHHhhccceeeccHHHHHHH--HhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHH
Confidence 7777777779999999654444332210 124588999999875555567899999999999987788888888766 2
Q ss_pred -hHhhhh
Q psy4705 150 -FVSCLG 155 (164)
Q Consensus 150 -~~~~l~ 155 (164)
++++|.
T Consensus 368 ~Li~~l~ 374 (514)
T KOG0166|consen 368 VLINLLQ 374 (514)
T ss_pred HHHHHHh
Confidence 666653
No 16
>PRK09687 putative lyase; Provisional
Probab=96.90 E-value=0.0084 Score=50.71 Aligned_cols=28 Identities=21% Similarity=0.083 Sum_probs=20.3
Q ss_pred cchHHHHhccCCCcchHHHHHHHHHHHcccC
Q psy4705 104 EVVRPLLSLLHPEATALETFEGLMALCNLAA 134 (164)
Q Consensus 104 ~av~pL~~LL~~~~~~l~~fEaLlALTNLAs 134 (164)
.+||+|+..|+ +++ -.+++.-||+++.+
T Consensus 223 ~av~~Li~~L~-~~~--~~~~a~~ALg~ig~ 250 (280)
T PRK09687 223 RVLSVLIKELK-KGT--VGDLIIEAAGELGD 250 (280)
T ss_pred hHHHHHHHHHc-CCc--hHHHHHHHHHhcCC
Confidence 47888888887 344 35678888888864
No 17
>PRK09687 putative lyase; Provisional
Probab=96.83 E-value=0.02 Score=48.43 Aligned_cols=123 Identities=15% Similarity=0.111 Sum_probs=60.5
Q ss_pred hHHHHHHHHHHhcChhHHHHHHHhhcccCCHHHHHHHHHHHHHhccchhhHHHHHhcChHHHHHHH-hhccchhhhhHHH
Q psy4705 3 RRAATQTMTNMIVSEDVIKIYEANKDKVESDNTRELLARILNALASQQELRGLMVQQGASKALIHL-AHNGTVKGKRQAA 81 (164)
Q Consensus 3 ~~aa~~~l~nli~~~~vi~~l~v~l~k~~S~~~k~~~~~il~~Ls~~~~~R~~ivqqGai~~Ll~l-~~~gt~~~~~~A~ 81 (164)
|.+|+..+... -.+.+.+.+ ..+.+++++.+|..++.+|..|-..+.. +.-++..|..+ ..+..+..+..|+
T Consensus 40 R~~A~~aL~~~-~~~~~~~~l-~~ll~~~d~~vR~~A~~aLg~lg~~~~~-----~~~a~~~L~~l~~~D~d~~VR~~A~ 112 (280)
T PRK09687 40 RISSIRVLQLR-GGQDVFRLA-IELCSSKNPIERDIGADILSQLGMAKRC-----QDNVFNILNNLALEDKSACVRASAI 112 (280)
T ss_pred HHHHHHHHHhc-CcchHHHHH-HHHHhCCCHHHHHHHHHHHHhcCCCccc-----hHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 44555555433 345555555 4566666666666666666666543321 22334444443 2233334444444
Q ss_pred HHHHHHhCcC------------------CCCcccC------CCCcccchHHHHhccCCCcchHHHHHHHHHHHccc
Q psy4705 82 QGLARLGITL------------------NPEVAFP------GERSLEVVRPLLSLLHPEATALETFEGLMALCNLA 133 (164)
Q Consensus 82 ~ALakLlIs~------------------nP~l~f~------~~~~~~av~pL~~LL~~~~~~l~~fEaLlALTNLA 133 (164)
.+|+++.... ||.+-|. .....++|++|+.+|. +.+..=..+|..||.++.
T Consensus 113 ~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~~ai~~L~~~L~-d~~~~VR~~A~~aLg~~~ 187 (280)
T PRK09687 113 NATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVINDEAAIPLLINLLK-DPNGDVRNWAAFALNSNK 187 (280)
T ss_pred HHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCCHHHHHHHHHHhc-CCCHHHHHHHHHHHhcCC
Confidence 4444442111 1111110 0112347778888776 444445666777777774
No 18
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=96.21 E-value=0.012 Score=34.24 Aligned_cols=39 Identities=26% Similarity=0.326 Sum_probs=33.9
Q ss_pred hhhHHHHHhcChHHHHHHHhhccchhhhhHHHHHHHHHh
Q psy4705 50 QELRGLMVQQGASKALIHLAHNGTVKGKRQAAQGLARLG 88 (164)
Q Consensus 50 ~~~R~~ivqqGai~~Ll~l~~~gt~~~~~~A~~ALakLl 88 (164)
++.+..++++|+++.|+++..++.+..+..|..+|.+|+
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 457888999999999999888777888888999999874
No 19
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=96.03 E-value=0.072 Score=47.37 Aligned_cols=108 Identities=13% Similarity=0.044 Sum_probs=75.3
Q ss_pred HHHHHHHHhccch-hhHHHHHhcChHHHHHHHhhccc-hhhhhHHHHHHHHHhCcCCCCcccCCCCcccchHHHHhccCC
Q psy4705 38 LLARILNALASQQ-ELRGLMVQQGASKALIHLAHNGT-VKGKRQAAQGLARLGITLNPEVAFPGERSLEVVRPLLSLLHP 115 (164)
Q Consensus 38 ~~~~il~~Ls~~~-~~R~~ivqqGai~~Ll~l~~~gt-~~~~~~A~~ALakLlIs~nP~l~f~~~~~~~av~pL~~LL~~ 115 (164)
...+.=-.|+.+. .-...+++.|.++-++++..+.. +-.+.-|+.||.+|+--+....-. ....+|||.++.||.
T Consensus 91 av~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkv--Vvd~~AVPlfiqlL~- 167 (526)
T COG5064 91 AVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKV--VVDAGAVPLFIQLLS- 167 (526)
T ss_pred HHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEE--EEeCCchHHHHHHHc-
Confidence 3344444555553 34567889999999999886544 345567999999996554433211 123569999999987
Q ss_pred CcchHHHHHHHHHHHcccCCChHHHHHHHhccc
Q psy4705 116 EATALETFEGLMALCNLAAIGEKQRQRKKLNFR 148 (164)
Q Consensus 116 ~~~~l~~fEaLlALTNLAs~~~~~r~~Iv~~~~ 148 (164)
+.+.--+..+.-||.|+|..++..|+-+...|.
T Consensus 168 s~~~~V~eQavWALGNiAGDS~~~RD~vL~~ga 200 (526)
T COG5064 168 STEDDVREQAVWALGNIAGDSEGCRDYVLQCGA 200 (526)
T ss_pred CchHHHHHHHHHHhccccCCchhHHHHHHhcCc
Confidence 444444556899999999998888888877655
No 20
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=95.87 E-value=0.025 Score=38.19 Aligned_cols=87 Identities=26% Similarity=0.273 Sum_probs=62.3
Q ss_pred HHHHHHhhc-ccCCHHHHHHHHHHHHHhccchhhHHHHHhcChHHHHHHHhhccchhhhhHHHHHHHHHhCcCCCCcccC
Q psy4705 20 IKIYEANKD-KVESDNTRELLARILNALASQQELRGLMVQQGASKALIHLAHNGTVKGKRQAAQGLARLGITLNPEVAFP 98 (164)
Q Consensus 20 i~~l~v~l~-k~~S~~~k~~~~~il~~Ls~~~~~R~~ivqqGai~~Ll~l~~~gt~~~~~~A~~ALakLlIs~nP~l~f~ 98 (164)
++.+ .... +.+++.+|..++++|..+-.. .++..|+++..+..+..+..|+++|+++.
T Consensus 1 i~~L-~~~l~~~~~~~vr~~a~~~L~~~~~~----------~~~~~L~~~l~d~~~~vr~~a~~aL~~i~---------- 59 (88)
T PF13646_consen 1 IPAL-LQLLQNDPDPQVRAEAARALGELGDP----------EAIPALIELLKDEDPMVRRAAARALGRIG---------- 59 (88)
T ss_dssp HHHH-HHHHHTSSSHHHHHHHHHHHHCCTHH----------HHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------
T ss_pred CHHH-HHHHhcCCCHHHHHHHHHHHHHcCCH----------hHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------
Confidence 3455 3433 778899999888888743211 45888888887777889999999999882
Q ss_pred CCCcccchHHHHhccCCCcchHHHHHHHHHHH
Q psy4705 99 GERSLEVVRPLLSLLHPEATALETFEGLMALC 130 (164)
Q Consensus 99 ~~~~~~av~pL~~LL~~~~~~l~~fEaLlALT 130 (164)
..+++++|..++..+.+..=+.+|..||.
T Consensus 60 ---~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 ---DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp ---HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred ---CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 24578899998875555444677887773
No 21
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=95.50 E-value=0.17 Score=46.03 Aligned_cols=132 Identities=14% Similarity=0.125 Sum_probs=93.4
Q ss_pred hHHHHHHHhhcccCCHHHHHHHHHHHHHhccchhh-HHHHHhcChHHHHHHHhhccchhhhhHHHHHHHHHhCcCCCC--
Q psy4705 18 DVIKIYEANKDKVESDNTRELLARILNALASQQEL-RGLMVQQGASKALIHLAHNGTVKGKRQAAQGLARLGITLNPE-- 94 (164)
Q Consensus 18 ~vi~~l~v~l~k~~S~~~k~~~~~il~~Ls~~~~~-R~~ivqqGai~~Ll~l~~~gt~~~~~~A~~ALakLlIs~nP~-- 94 (164)
+..+.+ .......++.+|+.+.+.+.++.++.+. ...+...+-+..++.............|+.+|.+|+-+ .+.
T Consensus 77 ~~~~~L-~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~-~~~~~ 154 (503)
T PF10508_consen 77 QYQPFL-QRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASH-PEGLE 154 (503)
T ss_pred HHHHHH-HHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCC-chhHH
Confidence 334444 4445678999999999999998888765 44455678888877766666666667799999999643 333
Q ss_pred cccCCCCcccchHHHHhccCCCcchHHHHHHHHHHHcccCCChHHHHHHHhccch--hHhhhhc
Q psy4705 95 VAFPGERSLEVVRPLLSLLHPEATALETFEGLMALCNLAAIGEKQRQRKKLNFRP--FVSCLGG 156 (164)
Q Consensus 95 l~f~~~~~~~av~pL~~LL~~~~~~l~~fEaLlALTNLAs~~~~~r~~Iv~~~~~--~~~~l~~ 156 (164)
.+|++ +.++-|..++. .++..-++..+-.++++++.+++..+.+...|.- ++.+|.+
T Consensus 155 ~l~~~----~~~~~L~~l~~-~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~ 213 (503)
T PF10508_consen 155 QLFDS----NLLSKLKSLMS-QSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDS 213 (503)
T ss_pred HHhCc----chHHHHHHHHh-ccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcC
Confidence 35542 34677888886 3344557888888999999999988888877652 5555544
No 22
>KOG1048|consensus
Probab=95.39 E-value=0.15 Score=48.62 Aligned_cols=130 Identities=17% Similarity=0.080 Sum_probs=93.4
Q ss_pred HhcChhHHHHHHHhhcccCCHHHHHHHHHHHHHhccc-hhhHHHHHhcChHHHHHHHhhccchhhhhHHHHHHHHHhCcC
Q psy4705 13 MIVSEDVIKIYEANKDKVESDNTRELLARILNALASQ-QELRGLMVQQGASKALIHLAHNGTVKGKRQAAQGLARLGITL 91 (164)
Q Consensus 13 li~~~~vi~~l~v~l~k~~S~~~k~~~~~il~~Ls~~-~~~R~~ivqqGai~~Ll~l~~~gt~~~~~~A~~ALakLlIs~ 91 (164)
.+..++|+.+++ +..+..+..++..+-++|.- .+.+.++-|.||+.-|+.+......+....|..||-||.-..
T Consensus 232 d~~lpe~i~mL~-----~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~ 306 (717)
T KOG1048|consen 232 DPTLPEVISMLM-----SQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGK 306 (717)
T ss_pred ccccHHHHHHHh-----ccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhccc
Confidence 445567777764 23577778888888899987 467888888899999999998888888888999999996655
Q ss_pred CCCcccCCCCcccchHHHHhccCCCcchHHHHHHHHHHHcccCCChHHHHHHHhccc
Q psy4705 92 NPEVAFPGERSLEVVRPLLSLLHPEATALETFEGLMALCNLAAIGEKQRQRKKLNFR 148 (164)
Q Consensus 92 nP~l~f~~~~~~~av~pL~~LL~~~~~~l~~fEaLlALTNLAs~~~~~r~~Iv~~~~ 148 (164)
+-.-=+-...-.+.||-++.+|+...+..=+-+.--.|=||+|. |.++..|+..+-
T Consensus 307 ~~~~NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~-D~lK~~ii~~al 362 (717)
T KOG1048|consen 307 STDSNKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSN-DALKMLIITSAL 362 (717)
T ss_pred CCcccchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccch-hHHHHHHHHHHH
Confidence 54111111123568999999998434443344466788999887 667777776543
No 23
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=95.38 E-value=0.29 Score=44.60 Aligned_cols=141 Identities=15% Similarity=0.089 Sum_probs=102.8
Q ss_pred HHhcChhHHHHHHHhhcccCCHHHHHHHHHHHHHhccchhhHHHHHhcChHHHHHHHhhccchhhhhHHHHHHHHHhCcC
Q psy4705 12 NMIVSEDVIKIYEANKDKVESDNTRELLARILNALASQQELRGLMVQQGASKALIHLAHNGTVKGKRQAAQGLARLGITL 91 (164)
Q Consensus 12 nli~~~~vi~~l~v~l~k~~S~~~k~~~~~il~~Ls~~~~~R~~ivqqGai~~Ll~l~~~gt~~~~~~A~~ALakLlIs~ 91 (164)
.++.+.++++.+ ..+.+.+..++.+.++++|..++..+.....+...+....|..+..+..+..|......+.+++- .
T Consensus 113 ~~~~~~~l~~~i-~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~-~ 190 (503)
T PF10508_consen 113 QLLVDNELLPLI-IQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIAS-H 190 (503)
T ss_pred HHhcCccHHHHH-HHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHh-c
Confidence 346667778876 56668888999999999999999999888889999998888887766566677777888888842 2
Q ss_pred CCCcccCCCCcccchHHHHhccCCCcchHHHHHHHHHHHcccCCChHHHHHHHhccch--hHhhhhcc
Q psy4705 92 NPEVAFPGERSLEVVRPLLSLLHPEATALETFEGLMALCNLAAIGEKQRQRKKLNFRP--FVSCLGGV 157 (164)
Q Consensus 92 nP~l~f~~~~~~~av~pL~~LL~~~~~~l~~fEaLlALTNLAs~~~~~r~~Iv~~~~~--~~~~l~~~ 157 (164)
+|.. |......+.++.++..|. +.+.+-+-.++--|+.||.. +...+-+.+.|.. +.+.+-+.
T Consensus 191 S~~~-~~~~~~sgll~~ll~eL~-~dDiLvqlnalell~~La~~-~~g~~yL~~~gi~~~L~~~l~~~ 255 (503)
T PF10508_consen 191 SPEA-AEAVVNSGLLDLLLKELD-SDDILVQLNALELLSELAET-PHGLQYLEQQGIFDKLSNLLQDS 255 (503)
T ss_pred CHHH-HHHHHhccHHHHHHHHhc-CccHHHHHHHHHHHHHHHcC-hhHHHHHHhCCHHHHHHHHHhcc
Confidence 2322 111111247788888888 46767788899999999984 5557778777663 55555443
No 24
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=95.11 E-value=0.073 Score=35.86 Aligned_cols=72 Identities=24% Similarity=0.262 Sum_probs=54.2
Q ss_pred hhHHHHHHHHHHhcChhHHHHHHHhhcccCCHHHHHHHHHHHHHhccchhhHHHHHhcChHHHHHHHhhccchh-hhhHH
Q psy4705 2 LRRAATQTMTNMIVSEDVIKIYEANKDKVESDNTRELLARILNALASQQELRGLMVQQGASKALIHLAHNGTVK-GKRQA 80 (164)
Q Consensus 2 ~~~aa~~~l~nli~~~~vi~~l~v~l~k~~S~~~k~~~~~il~~Ls~~~~~R~~ivqqGai~~Ll~l~~~gt~~-~~~~A 80 (164)
+|..|++++.++ -++++++.+ ..+.+.+++.+|..++..|..+-. ..++..|..+..+..+. .+..|
T Consensus 16 vr~~a~~~L~~~-~~~~~~~~L-~~~l~d~~~~vr~~a~~aL~~i~~----------~~~~~~L~~~l~~~~~~~vr~~a 83 (88)
T PF13646_consen 16 VRAEAARALGEL-GDPEAIPAL-IELLKDEDPMVRRAAARALGRIGD----------PEAIPALIKLLQDDDDEVVREAA 83 (88)
T ss_dssp HHHHHHHHHHCC-THHHHHHHH-HHHHTSSSHHHHHHHHHHHHCCHH----------HHTHHHHHHHHTC-SSHHHHHHH
T ss_pred HHHHHHHHHHHc-CCHhHHHHH-HHHHcCCCHHHHHHHHHHHHHhCC----------HHHHHHHHHHHcCCCcHHHHHHH
Confidence 688899999955 577899998 677789999999999999987731 23677777766654443 47778
Q ss_pred HHHHH
Q psy4705 81 AQGLA 85 (164)
Q Consensus 81 ~~ALa 85 (164)
.++|+
T Consensus 84 ~~aL~ 88 (88)
T PF13646_consen 84 AEALG 88 (88)
T ss_dssp HHHHH
T ss_pred HhhcC
Confidence 88875
No 25
>KOG4199|consensus
Probab=94.93 E-value=0.26 Score=43.73 Aligned_cols=139 Identities=13% Similarity=0.108 Sum_probs=87.7
Q ss_pred hcChhHHHHHHHhhcccC-CHHHHHHHHHHHHHhccchhhHHHHHhcChHHHHHHHhhc-cchhhhhHHHHHHHHH---h
Q psy4705 14 IVSEDVIKIYEANKDKVE-SDNTRELLARILNALASQQELRGLMVQQGASKALIHLAHN-GTVKGKRQAAQGLARL---G 88 (164)
Q Consensus 14 i~~~~vi~~l~v~l~k~~-S~~~k~~~~~il~~Ls~~~~~R~~ivqqGai~~Ll~l~~~-gt~~~~~~A~~ALakL---l 88 (164)
+..++....+ ++..+.+ -|++..-+.-.|-.|+-.++.+..|+..||+..|+++..+ +....|..+-++|.-| +
T Consensus 237 ia~e~~l~~L-~Eal~A~~dp~~L~~l~~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralA 315 (461)
T KOG4199|consen 237 IAKEGILTAL-TEALQAGIDPDSLVSLSTTLKALAVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALA 315 (461)
T ss_pred HHHhhhHHHH-HHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHh
Confidence 5556656665 5655544 2455555567889999999999999999999999997655 4444444554554444 2
Q ss_pred CcCCC-CcccCCCCcccchHHHHhcc-CCCcchHHHHHHHHHHHcccCCChHHHHHHHhccc-h-hHhhhhcc
Q psy4705 89 ITLNP-EVAFPGERSLEVVRPLLSLL-HPEATALETFEGLMALCNLAAIGEKQRQRKKLNFR-P-FVSCLGGV 157 (164)
Q Consensus 89 Is~nP-~l~f~~~~~~~av~pL~~LL-~~~~~~l~~fEaLlALTNLAs~~~~~r~~Iv~~~~-~-~~~~l~~~ 157 (164)
=+.+- +.+-. ....+-++.|+ +-..+.+=.-|++.+++-|+--+++...++++.|. + .++.|+--
T Consensus 316 G~DsvKs~IV~----~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkah 384 (461)
T KOG4199|consen 316 GSDSVKSTIVE----KGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAH 384 (461)
T ss_pred CCCchHHHHHH----hcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhC
Confidence 22221 11111 22444555543 22345555667888899898777887888888766 3 66666543
No 26
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=94.80 E-value=0.055 Score=32.28 Aligned_cols=38 Identities=24% Similarity=0.115 Sum_probs=33.3
Q ss_pred HHHHhcChhHHHHHHHhhcccCCHHHHHHHHHHHHHhcc
Q psy4705 10 MTNMIVSEDVIKIYEANKDKVESDNTRELLARILNALAS 48 (164)
Q Consensus 10 l~nli~~~~vi~~l~v~l~k~~S~~~k~~~~~il~~Ls~ 48 (164)
.+..+++.|++|.| +.+.+++++.+++.++..|.|||.
T Consensus 4 ~~~~i~~~g~i~~L-v~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 4 NKQAIVEAGGIPPL-VQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp HHHHHHHTTHHHHH-HHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcccHHHH-HHHHcCCCHHHHHHHHHHHHHHhC
Confidence 34567788999999 899999999999999999999873
No 27
>KOG4151|consensus
Probab=94.61 E-value=0.058 Score=51.43 Aligned_cols=122 Identities=19% Similarity=0.146 Sum_probs=85.1
Q ss_pred ChhHHHHHHHHHHhcChhHHHHHHHhhcccCCHHHHHHHHHHHHHhccchhhHHHHHhcChHHHHHHHhhccchhhh--h
Q psy4705 1 MLRRAATQTMTNMIVSEDVIKIYEANKDKVESDNTRELLARILNALASQQELRGLMVQQGASKALIHLAHNGTVKGK--R 78 (164)
Q Consensus 1 ~~~~aa~~~l~nli~~~~vi~~l~v~l~k~~S~~~k~~~~~il~~Ls~~~~~R~~ivqqGai~~Ll~l~~~gt~~~~--~ 78 (164)
+++|||+++++||+.++-.+..+.++. ++++ .++..++.....+.+++.+|+..++.....+.|+... .
T Consensus 599 ~lqraa~e~~~NLl~~~~~~e~si~e~----~~~l-----~~w~~~~e~~~E~~~lA~a~a~a~I~sv~~n~c~~~~~~~ 669 (748)
T KOG4151|consen 599 ALQRAALESIINLLWSPLLYERSIVEY----KDRL-----KLWNLNLEVADEKFELAGAGALAAITSVVENHCSRILELL 669 (748)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHhhcc----ccCc-----hHHHHHHHhhhhHHhhhccccccchhhcchhhhhhHHHhh
Confidence 479999999999999999999886663 5666 6677777778899999999999977776666665322 1
Q ss_pred HHHHHHHHHhCcCCCCcccCCCC-cccchHHHHhccCCCcchHHHHHHHHHHHcc
Q psy4705 79 QAAQGLARLGITLNPEVAFPGER-SLEVVRPLLSLLHPEATALETFEGLMALCNL 132 (164)
Q Consensus 79 ~A~~ALakLlIs~nP~l~f~~~~-~~~av~pL~~LL~~~~~~l~~fEaLlALTNL 132 (164)
..-.-+.++.-+.++.+++.|.+ ..+.+--+.++.+ ..-..++|+-+..++.+
T Consensus 670 ~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~~~ei~~-~~~~~~~~~~l~~~~~~ 723 (748)
T KOG4151|consen 670 EWLEILVRAIQDEDDEIQHRGLVIILNLFEALFEIAE-KIFETEVMELLSGLQKL 723 (748)
T ss_pred cchHHHHHhhcCchhhhhhhhhhhhhhHHHHHHHHHH-HhccchHHHHHHHHHHh
Confidence 23567788888888888887643 1111112222222 22236788888888777
No 28
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=94.40 E-value=0.12 Score=32.38 Aligned_cols=55 Identities=24% Similarity=0.067 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHhccchhhHHHHHhcChHHHHHHHhhccchhhhhHHHHHHHHH
Q psy4705 33 DNTRELLARILNALASQQELRGLMVQQGASKALIHLAHNGTVKGKRQAAQGLARL 87 (164)
Q Consensus 33 ~~~k~~~~~il~~Ls~~~~~R~~ivqqGai~~Ll~l~~~gt~~~~~~A~~ALakL 87 (164)
+.+|+.++..|.+++........-.....+..|+.+..+..+..+..|+.||.+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 4578888888888887766666667778888888888877778888899999875
No 29
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=94.21 E-value=0.86 Score=44.36 Aligned_cols=30 Identities=17% Similarity=0.097 Sum_probs=23.3
Q ss_pred ccchHHHHhccCCCcchHHHHHHHHHHHccc
Q psy4705 103 LEVVRPLLSLLHPEATALETFEGLMALCNLA 133 (164)
Q Consensus 103 ~~av~pL~~LL~~~~~~l~~fEaLlALTNLA 133 (164)
.+++++|+.+|. |.+..=..+|..||..+.
T Consensus 837 ~~a~~~L~~~L~-D~~~~VR~~A~~aL~~~~ 866 (897)
T PRK13800 837 DVAVPALVEALT-DPHLDVRKAAVLALTRWP 866 (897)
T ss_pred cchHHHHHHHhc-CCCHHHHHHHHHHHhccC
Confidence 347788999887 666667788999998873
No 30
>PF05536 Neurochondrin: Neurochondrin
Probab=94.19 E-value=0.21 Score=46.15 Aligned_cols=114 Identities=20% Similarity=0.088 Sum_probs=81.9
Q ss_pred HHHHHHhhcccCCH-HHHHHHHHHHHHhccchhhHHHHHhcChHHHHHHHhhccchhhhhHHHHHHHHHhCcCCCCcccC
Q psy4705 20 IKIYEANKDKVESD-NTRELLARILNALASQQELRGLMVQQGASKALIHLAHNGTVKGKRQAAQGLARLGITLNPEVAFP 98 (164)
Q Consensus 20 i~~l~v~l~k~~S~-~~k~~~~~il~~Ls~~~~~R~~ivqqGai~~Ll~l~~~gt~~~~~~A~~ALakLlIs~nP~l~f~ 98 (164)
||.+ +++..+.++ ..-+.+..+|+.++..++-+..+++.|+++.|.+...+ .+.+...|.+.|.+++-...+...-.
T Consensus 100 IP~L-le~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~lL~~Lls~~~~~~~~~ 177 (543)
T PF05536_consen 100 IPLL-LEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN-QSFQMEIALNLLLNLLSRLGQKSWAE 177 (543)
T ss_pred HHHH-HHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHHHHHHHHHhcchhhhhh
Confidence 5565 566655665 77788889999999999999999999999999997766 44556678899999877766543211
Q ss_pred CC-CcccchHHHHhccCCCcchHHHHHHHHHHHcccCCC
Q psy4705 99 GE-RSLEVVRPLLSLLHPEATALETFEGLMALCNLAAIG 136 (164)
Q Consensus 99 ~~-~~~~av~pL~~LL~~~~~~l~~fEaLlALTNLAs~~ 136 (164)
.. .....++.+..... .....++||.+-=|.++=+..
T Consensus 178 ~~~~l~~il~~La~~fs-~~~~~~kfell~~L~~~L~~~ 215 (543)
T PF05536_consen 178 DSQLLHSILPSLARDFS-SFHGEDKFELLEFLSAFLPRS 215 (543)
T ss_pred hHHHHHHHHHHHHHHHH-hhccchHHHHHHHHHHhcCcC
Confidence 11 12235566666555 445678999988888776554
No 31
>KOG2160|consensus
Probab=93.89 E-value=0.25 Score=43.34 Aligned_cols=120 Identities=15% Similarity=0.141 Sum_probs=81.1
Q ss_pred hcChhHHHHHHHhhcccCCHHHHHHHHHHHHHhccc-hhhHHHHHhcChHHHHHHHh-hccchhhhhHHHHHHHHHhCcC
Q psy4705 14 IVSEDVIKIYEANKDKVESDNTRELLARILNALASQ-QELRGLMVQQGASKALIHLA-HNGTVKGKRQAAQGLARLGITL 91 (164)
Q Consensus 14 i~~~~vi~~l~v~l~k~~S~~~k~~~~~il~~Ls~~-~~~R~~ivqqGai~~Ll~l~-~~gt~~~~~~A~~ALakLlIs~ 91 (164)
+.+-|...++ ....+++...+|+.+++++...+.+ +..-..+...||.+.|+.+. .+++...+..|..|+.-+.-+.
T Consensus 120 l~~~ggl~~l-l~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~ 198 (342)
T KOG2160|consen 120 LISLGGLVPL-LGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSSDDPNTVRTKALFAISSLIRNN 198 (342)
T ss_pred HhhccCHHHH-HHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHccCCCchHHHHHHHHHHHHHhcC
Confidence 4444555555 3478888999999999999888877 88999999999999999844 5666677778899998887777
Q ss_pred CCCc-ccCCCCcccchHHHHhccCCC-cchHHHHHHHHHHHcccCCCh
Q psy4705 92 NPEV-AFPGERSLEVVRPLLSLLHPE-ATALETFEGLMALCNLAAIGE 137 (164)
Q Consensus 92 nP~l-~f~~~~~~~av~pL~~LL~~~-~~~l~~fEaLlALTNLAs~~~ 137 (164)
-|-. .|-+.. ....|...+... .+..-+--++-=+++|..-+.
T Consensus 199 ~~g~~~fl~~~---G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~ 243 (342)
T KOG2160|consen 199 KPGQDEFLKLN---GYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDK 243 (342)
T ss_pred cHHHHHHHhcC---CHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhh
Confidence 7753 454332 233455555421 222333345555555655433
No 32
>KOG4199|consensus
Probab=93.89 E-value=0.35 Score=43.00 Aligned_cols=135 Identities=13% Similarity=0.130 Sum_probs=89.8
Q ss_pred HHHHHHhcChhHHHHHHHhhcccCC-HHHHHHHHHHHHHhccchhhH----------HHHHhcChHHHHHHHhhccchhh
Q psy4705 8 QTMTNMIVSEDVIKIYEANKDKVES-DNTRELLARILNALASQQELR----------GLMVQQGASKALIHLAHNGTVKG 76 (164)
Q Consensus 8 ~~l~nli~~~~vi~~l~v~l~k~~S-~~~k~~~~~il~~Ls~~~~~R----------~~ivqqGai~~Ll~l~~~gt~~~ 76 (164)
|..+-+++..++.+.+.-.+.+.|- +-+||... .|-.|..|+++| ..+++.|+.+.|++..+-+.+..
T Consensus 179 E~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~-a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~ 257 (461)
T KOG4199|consen 179 EVNRQLFMELKILELILQVLNREGKTRTVRELYD-AIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPD 257 (461)
T ss_pred HHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHH-HHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCcc
Confidence 3445557777888876545555554 46677764 677788887765 57899999999999877655432
Q ss_pred -hhHHHHHHHHHhCcCCCCcccCCCCcccchHHHHhccCCCcchH----HHHHHHHHHHcccCCChHHHHHHHhccc
Q psy4705 77 -KRQAAQGLARLGITLNPEVAFPGERSLEVVRPLLSLLHPEATAL----ETFEGLMALCNLAAIGEKQRQRKKLNFR 148 (164)
Q Consensus 77 -~~~A~~ALakLlIs~nP~l~f~~~~~~~av~pL~~LL~~~~~~l----~~fEaLlALTNLAs~~~~~r~~Iv~~~~ 148 (164)
-..+.-+|..|++...-.... .....+.-|+.++. |++.. -.-+.+.-|--||.. |+++..|++.++
T Consensus 258 ~L~~l~~tl~~lAVr~E~C~~I---~e~GGl~tl~~~i~-d~n~~~~r~l~k~~lslLralAG~-DsvKs~IV~~gg 329 (461)
T KOG4199|consen 258 SLVSLSTTLKALAVRDEICKSI---AESGGLDTLLRCID-DSNEQGNRTLAKTCLSLLRALAGS-DSVKSTIVEKGG 329 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHccCHHHHHHHHh-hhchhhHHHHHHHHHHHHHHHhCC-CchHHHHHHhcC
Confidence 233466777776654432211 12347788999997 44332 233567777778775 778999999987
No 33
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=93.71 E-value=0.36 Score=40.99 Aligned_cols=124 Identities=17% Similarity=0.102 Sum_probs=84.8
Q ss_pred HHHHHHHhhcccCCHHHHHHHHHHHHHhccchhhHHHHHhcChHHHHHHHhhcc----chhhhhHHHHHHHHHhCcCCCC
Q psy4705 19 VIKIYEANKDKVESDNTRELLARILNALASQQELRGLMVQQGASKALIHLAHNG----TVKGKRQAAQGLARLGITLNPE 94 (164)
Q Consensus 19 vi~~l~v~l~k~~S~~~k~~~~~il~~Ls~~~~~R~~ivqqGai~~Ll~l~~~g----t~~~~~~A~~ALakLlIs~nP~ 94 (164)
...+| ..+...+..-++..+++++..|....+.+..-..++.+..++....+. .......+.++|+.++....-.
T Consensus 106 ~~~~f-l~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R 184 (312)
T PF03224_consen 106 PYSPF-LKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYR 184 (312)
T ss_dssp -HHHH-HHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHH
T ss_pred hHHHH-HHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhH
Confidence 45565 346667788889999999999988877777766688888888765432 1223367899999998776656
Q ss_pred cccCCCCcccchHHHHhcc------CCCcchHHHHHHHHHHHcccCCChHHHHHHHhcc
Q psy4705 95 VAFPGERSLEVVRPLLSLL------HPEATALETFEGLMALCNLAAIGEKQRQRKKLNF 147 (164)
Q Consensus 95 l~f~~~~~~~av~pL~~LL------~~~~~~l~~fEaLlALTNLAs~~~~~r~~Iv~~~ 147 (164)
..|-. .+.|++|..++ .......-.|++++.+=-| |++++....+.+.+
T Consensus 185 ~~f~~---~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlL-SF~~~~~~~~~~~~ 239 (312)
T PF03224_consen 185 QVFWK---SNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLL-SFEPEIAEELNKKY 239 (312)
T ss_dssp HHHHT---HHHHHHHHHHHH---------HHHHHHHHHHHHHHH-TTSHHHHHHHHTTS
T ss_pred HHHHh---cCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHH-hcCHHHHHHHhccc
Confidence 66643 56899999988 3334457789999999988 56677777776665
No 34
>KOG0168|consensus
Probab=93.06 E-value=0.59 Score=45.62 Aligned_cols=123 Identities=18% Similarity=0.166 Sum_probs=84.5
Q ss_pred HHHHHHHHH----------hcChhHHHHHHHhhcccCCHHHHHHHHHHHHHhccchhhHHHHHhcChHHHHHHHhhccch
Q psy4705 5 AATQTMTNM----------IVSEDVIKIYEANKDKVESDNTRELLARILNALASQQELRGLMVQQGASKALIHLAHNGTV 74 (164)
Q Consensus 5 aa~~~l~nl----------i~~~~vi~~l~v~l~k~~S~~~k~~~~~il~~Ls~~~~~R~~ivqqGai~~Ll~l~~~gt~ 74 (164)
-|.+||.+| +|.+++||.|...|..-+.-.+-||.-..+=.++++ +-..|.|.||+.+.+.+...=+-
T Consensus 231 ~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~--H~~AiL~AG~l~a~LsylDFFSi 308 (1051)
T KOG0168|consen 231 LACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRR--HPKAILQAGALSAVLSYLDFFSI 308 (1051)
T ss_pred HHHHHHHHHHhhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhh--ccHHHHhcccHHHHHHHHHHHHH
Confidence 366777777 788999999965666666667777777777777754 55679999999999886543333
Q ss_pred hhhhHHHHHHHHHhCcCCCCcccCCCCcccchHHHHhccCCCcchHHHHHHHHHHHccc
Q psy4705 75 KGKRQAAQGLARLGITLNPEVAFPGERSLEVVRPLLSLLHPEATALETFEGLMALCNLA 133 (164)
Q Consensus 75 ~~~~~A~~ALakLlIs~nP~l~f~~~~~~~av~pL~~LL~~~~~~l~~fEaLlALTNLA 133 (164)
..++.|.-.-|+++-+.-|.- |. -+.|++|-|..||. ..+-.....+..++|-++
T Consensus 309 ~aQR~AlaiaaN~Cksi~sd~-f~--~v~ealPlL~~lLs-~~D~k~ies~~ic~~ri~ 363 (1051)
T KOG0168|consen 309 HAQRVALAIAANCCKSIRSDE-FH--FVMEALPLLTPLLS-YQDKKPIESVCICLTRIA 363 (1051)
T ss_pred HHHHHHHHHHHHHHhcCCCcc-ch--HHHHHHHHHHHHHh-hccchhHHHHHHHHHHHH
Confidence 334557777888876665543 22 25789999999997 333333444555666654
No 35
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=92.59 E-value=1.3 Score=34.62 Aligned_cols=101 Identities=15% Similarity=0.203 Sum_probs=69.7
Q ss_pred hhHHHHHHHHHHhcC-hh----HHHHHHHhhcccCCHHHHHHHHHHHHHhccch--hhHHHHHhcChHHHHHHHhhccch
Q psy4705 2 LRRAATQTMTNMIVS-ED----VIKIYEANKDKVESDNTRELLARILNALASQQ--ELRGLMVQQGASKALIHLAHNGTV 74 (164)
Q Consensus 2 ~~~aa~~~l~nli~~-~~----vi~~l~v~l~k~~S~~~k~~~~~il~~Ls~~~--~~R~~ivqqGai~~Ll~l~~~gt~ 74 (164)
+|-++.-++++|+.. +. ..+.+ ....+.+++.+|.++..++.+|..+. +.+|.+. ..++.......+
T Consensus 4 vR~n~i~~l~DL~~r~~~~ve~~~~~l-~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~-----~~~l~~l~D~~~ 77 (178)
T PF12717_consen 4 VRNNAIIALGDLCIRYPNLVEPYLPNL-YKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLF-----SRILKLLVDENP 77 (178)
T ss_pred HHHHHHHHHHHHHHhCcHHHHhHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhh-----HHHHHHHcCCCH
Confidence 688899999999655 33 34444 56678899999999999999988774 2333331 233334455567
Q ss_pred hhhhHHHHHHHHHhCcCCCCcccCCCCcccchHHHHhccC
Q psy4705 75 KGKRQAAQGLARLGITLNPEVAFPGERSLEVVRPLLSLLH 114 (164)
Q Consensus 75 ~~~~~A~~ALakLlIs~nP~l~f~~~~~~~av~pL~~LL~ 114 (164)
..+..|...+..+.-..+|...+ +.++.++.-+.
T Consensus 78 ~Ir~~A~~~~~e~~~~~~~~~i~------~~~~e~i~~l~ 111 (178)
T PF12717_consen 78 EIRSLARSFFSELLKKRNPNIIY------NNFPELISSLN 111 (178)
T ss_pred HHHHHHHHHHHHHHHhccchHHH------HHHHHHHHHHh
Confidence 78888999999998877777653 34556655443
No 36
>KOG1222|consensus
Probab=92.39 E-value=1.3 Score=41.27 Aligned_cols=69 Identities=20% Similarity=0.314 Sum_probs=52.7
Q ss_pred hhHHHHHHHHHH---------hcChhHHHHHHHhhcccCCHHHHHHHHHHHHHhccchhhHHHHHhcChHHHHHHHhhcc
Q psy4705 2 LRRAATQTMTNM---------IVSEDVIKIYEANKDKVESDNTRELLARILNALASQQELRGLMVQQGASKALIHLAHNG 72 (164)
Q Consensus 2 ~~~aa~~~l~nl---------i~~~~vi~~l~v~l~k~~S~~~k~~~~~il~~Ls~~~~~R~~ivqqGai~~Ll~l~~~g 72 (164)
|+++....+.|+ +++.|.+|.+ +.+. +|+.-+..+..++|+++-|++..+..++.-++++|+.-.-+|
T Consensus 361 L~~~tl~LlfNlSFD~glr~KMv~~GllP~l-~~ll--~~d~~~~iA~~~lYh~S~dD~~K~MfayTdci~~lmk~v~~~ 437 (791)
T KOG1222|consen 361 LRKATLMLLFNLSFDSGLRPKMVNGGLLPHL-ASLL--DSDTKHGIALNMLYHLSCDDDAKAMFAYTDCIKLLMKDVLSG 437 (791)
T ss_pred HHHHHHHHhhhccccccccHHHhhccchHHH-HHHh--CCcccchhhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHHhc
Confidence 577777788887 5555666655 3332 466667788899999999999999999999999999855444
Q ss_pred c
Q psy4705 73 T 73 (164)
Q Consensus 73 t 73 (164)
+
T Consensus 438 ~ 438 (791)
T KOG1222|consen 438 T 438 (791)
T ss_pred C
Confidence 4
No 37
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=91.68 E-value=0.27 Score=28.31 Aligned_cols=38 Identities=18% Similarity=0.144 Sum_probs=31.9
Q ss_pred HHHHhcChhHHHHHHHhhcccCCHHHHHHHHHHHHHhcc
Q psy4705 10 MTNMIVSEDVIKIYEANKDKVESDNTRELLARILNALAS 48 (164)
Q Consensus 10 l~nli~~~~vi~~l~v~l~k~~S~~~k~~~~~il~~Ls~ 48 (164)
.+..+...|+++.+ +.+.+++++..++.+..+|.+|+.
T Consensus 4 ~~~~i~~~g~i~~L-~~ll~~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 4 QKQAVVDAGGLPAL-VELLKSEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred HHHHHHHCCCHHHH-HHHHcCCCHHHHHHHHHHHHHHcC
Confidence 44567778999998 788888899999999999999874
No 38
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=91.10 E-value=1.7 Score=42.42 Aligned_cols=47 Identities=11% Similarity=0.006 Sum_probs=32.0
Q ss_pred hhHHHHHHHHHHhcChh-HHHHHHHhhcccCCHHHHHHHHHHHHHhccc
Q psy4705 2 LRRAATQTMTNMIVSED-VIKIYEANKDKVESDNTRELLARILNALASQ 49 (164)
Q Consensus 2 ~~~aa~~~l~nli~~~~-vi~~l~v~l~k~~S~~~k~~~~~il~~Ls~~ 49 (164)
+|++|++.+..+-.... .++.+ ..+.+.+.+.+|..+++.|..+...
T Consensus 758 VR~~aa~aL~~~~~~~~~~~~~L-~~ll~D~d~~VR~aA~~aLg~~g~~ 805 (897)
T PRK13800 758 VRIAVAKGLATLGAGGAPAGDAV-RALTGDPDPLVRAAALAALAELGCP 805 (897)
T ss_pred HHHHHHHHHHHhccccchhHHHH-HHHhcCCCHHHHHHHHHHHHhcCCc
Confidence 57888888887754332 34555 5667777788888888777666543
No 39
>KOG1222|consensus
Probab=90.69 E-value=0.58 Score=43.46 Aligned_cols=64 Identities=22% Similarity=0.140 Sum_probs=45.7
Q ss_pred hcccCCHHHHHHHHHHHHHhccchhhHHHHHhcChHHHHHHHhhccchhhhhHHHHHHHHHhCcCC
Q psy4705 27 KDKVESDNTRELLARILNALASQQELRGLMVQQGASKALIHLAHNGTVKGKRQAAQGLARLGITLN 92 (164)
Q Consensus 27 l~k~~S~~~k~~~~~il~~Ls~~~~~R~~ivqqGai~~Ll~l~~~gt~~~~~~A~~ALakLlIs~n 92 (164)
+-...-+..+....++++||+.|...|..+|+-|-++.|..+..+.+. +..|...|-.+....+
T Consensus 353 lfp~~h~dL~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d~~--~~iA~~~lYh~S~dD~ 416 (791)
T KOG1222|consen 353 LFPIQHPDLRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDSDTK--HGIALNMLYHLSCDDD 416 (791)
T ss_pred hcCCCCHHHHHHHHHHhhhccccccccHHHhhccchHHHHHHhCCccc--chhhhhhhhhhccCcH
Confidence 333445778888999999999999999999999999999987765443 2234444444433333
No 40
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=90.49 E-value=1.5 Score=33.81 Aligned_cols=78 Identities=17% Similarity=0.178 Sum_probs=59.6
Q ss_pred HHHHHHhcChhHHHHHHHhhcc--cCCHHHHHHHHHHHHHhccchhhHHHHHhcChHHHHHHHhhccc-hh-hhhHHHHH
Q psy4705 8 QTMTNMIVSEDVIKIYEANKDK--VESDNTRELLARILNALASQQELRGLMVQQGASKALIHLAHNGT-VK-GKRQAAQG 83 (164)
Q Consensus 8 ~~l~nli~~~~vi~~l~v~l~k--~~S~~~k~~~~~il~~Ls~~~~~R~~ivqqGai~~Ll~l~~~gt-~~-~~~~A~~A 83 (164)
+..-.+..++|+++.+ ..+.. +.+......+.+.|-.=|.|++.|..|.++| +..|-++.+.+. +. .|..|+=.
T Consensus 76 dv~~~l~~~eg~~~~l-~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~~~-~~~L~~~~~~~~~~~~ir~~A~v~ 153 (157)
T PF11701_consen 76 DVGSELFLSEGFLESL-LPLASRKSKDRKVQKAALELLSAACIDKSCRTFISKNY-VSWLKELYKNSKDDSEIRVLAAVG 153 (157)
T ss_dssp HHHHHHCCTTTHHHHH-HHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHHHC-HHHHHHHTTTCC-HH-CHHHHHHH
T ss_pred HHHHHHHhhhhHHHHH-HHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHHHHHH-HHHHHHHHccccchHHHHHHHHHH
Confidence 3444567789999988 55555 7778888889999999999999999999998 667777665443 44 68888888
Q ss_pred HHHH
Q psy4705 84 LARL 87 (164)
Q Consensus 84 LakL 87 (164)
|.||
T Consensus 154 L~Kl 157 (157)
T PF11701_consen 154 LCKL 157 (157)
T ss_dssp HHHC
T ss_pred HhcC
Confidence 8775
No 41
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=90.47 E-value=1.2 Score=37.79 Aligned_cols=120 Identities=17% Similarity=0.085 Sum_probs=79.0
Q ss_pred CCHHHHHHHHHHHHHhccchhhHHHHHhc-------ChHHHHHHHhhccchhhhhHHHHHHHHHhCcCCCCcccCCCCcc
Q psy4705 31 ESDNTRELLARILNALASQQELRGLMVQQ-------GASKALIHLAHNGTVKGKRQAAQGLARLGITLNPEVAFPGERSL 103 (164)
Q Consensus 31 ~S~~~k~~~~~il~~Ls~~~~~R~~ivqq-------Gai~~Ll~l~~~gt~~~~~~A~~ALakLlIs~nP~l~f~~~~~~ 103 (164)
..+.+.+.+...+..+..+...|..+... .-..+++.+...+.......|++.|+.++...++..... ..
T Consensus 69 ~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~---~~ 145 (312)
T PF03224_consen 69 SNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKL---VK 145 (312)
T ss_dssp --HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHH---HH
T ss_pred CcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccch---HH
Confidence 56777777777888888887666666555 135777776666667778889999999988877654321 13
Q ss_pred cchHHHHhccCCCcch---HHHHHHHHHHHcccCCChHHHHHHHhccch--hHhhh
Q psy4705 104 EVVRPLLSLLHPEATA---LETFEGLMALCNLAAIGEKQRQRKKLNFRP--FVSCL 154 (164)
Q Consensus 104 ~av~pL~~LL~~~~~~---l~~fEaLlALTNLAs~~~~~r~~Iv~~~~~--~~~~l 154 (164)
+++++++..|....+. .-.+-++.+|.+|... ++.|..+++.++. +...|
T Consensus 146 ~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~-~~~R~~f~~~~~v~~l~~iL 200 (312)
T PF03224_consen 146 EALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRS-KEYRQVFWKSNGVSPLFDIL 200 (312)
T ss_dssp HHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTS-HHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCc-chhHHHHHhcCcHHHHHHHH
Confidence 5788888877632221 1226689999999865 7889999997763 66666
No 42
>KOG2122|consensus
Probab=89.96 E-value=1.3 Score=45.83 Aligned_cols=110 Identities=20% Similarity=0.281 Sum_probs=75.7
Q ss_pred HHHHHHHHHHhccchhhHHHHHhcChHHHHHHHhhcc---chhhhhHHHHHHHHHhCcCCCCcccCCCCcccchHHH---
Q psy4705 36 RELLARILNALASQQELRGLMVQQGASKALIHLAHNG---TVKGKRQAAQGLARLGITLNPEVAFPGERSLEVVRPL--- 109 (164)
Q Consensus 36 k~~~~~il~~Ls~~~~~R~~ivqqGai~~Ll~l~~~g---t~~~~~~A~~ALakLlIs~nP~l~f~~~~~~~av~pL--- 109 (164)
++-.+|.|+.++.+++.+..+.+.|.+..|+.+..-. -..-+..|.+||.+| |+.+|..-- |.+-..+.+.|
T Consensus 211 ~ee~ar~fLemSss~esCaamR~SgCLpLLvQilH~~d~~~kear~~A~aALHNI-VhSqPD~kr-~RRE~kvL~lLeQI 288 (2195)
T KOG2122|consen 211 EEEMARTFLEMSSSPESCAAMRRSGCLPLLVQILHGPDDEDKEARKRASAALHNI-VHSQPDEKR-GRREKKVLHLLEQI 288 (2195)
T ss_pred HHHHHHHHHHhccCchhhHHHHhccchHHHHHHhhCCchhhHHHHHHHHHHHHHH-hhcCcchhh-hHHHHHHHHHHHHH
Confidence 5666789999999999999999999999999976432 234567789999998 566666432 12211122222
Q ss_pred ---HhccC-----------CCcchHHHHHHHHHHHcccCCChHHHHHHHhccc
Q psy4705 110 ---LSLLH-----------PEATALETFEGLMALCNLAAIGEKQRQRKKLNFR 148 (164)
Q Consensus 110 ---~~LL~-----------~~~~~l~~fEaLlALTNLAs~~~~~r~~Iv~~~~ 148 (164)
++-++ |+...-|..-|+.+|..+ |+||+.|...-+.|+
T Consensus 289 raYC~~~~~~lqar~~~~apa~~~H~lcaA~~~lMK~-SFDEEhR~aM~ELG~ 340 (2195)
T KOG2122|consen 289 RAYCETCWTWLQARGPAIAPASDEHQLCAALCTLMKL-SFDEEHRHAMNELGG 340 (2195)
T ss_pred HHHHHHHHHHHHhcCCCCCCcccchhhHHHHHHHHHh-hccHHHHHHHHHhhh
Confidence 22111 112234556788899998 778999998887776
No 43
>KOG4500|consensus
Probab=88.39 E-value=1.5 Score=40.30 Aligned_cols=120 Identities=20% Similarity=0.191 Sum_probs=80.5
Q ss_pred CCHHHHHHHHHHHHHhccchhhHHHHHhcChHHHHHHHhhcc-chhhhhHHHHHHH-------HHhCcCCCCc--ccCCC
Q psy4705 31 ESDNTRELLARILNALASQQELRGLMVQQGASKALIHLAHNG-TVKGKRQAAQGLA-------RLGITLNPEV--AFPGE 100 (164)
Q Consensus 31 ~S~~~k~~~~~il~~Ls~~~~~R~~ivqqGai~~Ll~l~~~g-t~~~~~~A~~ALa-------kLlIs~nP~l--~f~~~ 100 (164)
..+..+|++-.++...++++..+-.++|.|-...++++.++. +...|.. ..+|- -++.+.|.+. .|.+.
T Consensus 236 v~~d~~eM~feila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d-~~~l~k~~~el~vllltGDeSMq~L~~~p 314 (604)
T KOG4500|consen 236 VREDIDEMIFEILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTD-MLNLFKRIAELDVLLLTGDESMQKLHADP 314 (604)
T ss_pred hccchhhHHHHHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHH-HHHHHHhhhhHhhhhhcCchHHHHHhcCc
Confidence 357778899999999999999999999999888888877652 2111111 11222 2223333332 22211
Q ss_pred CcccchHHHHhccCCCcchHHHHHHHHHHHcccCCChHHHHHHHhccch--hHhhhhc
Q psy4705 101 RSLEVVRPLLSLLHPEATALETFEGLMALCNLAAIGEKQRQRKKLNFRP--FVSCLGG 156 (164)
Q Consensus 101 ~~~~av~pL~~LL~~~~~~l~~fEaLlALTNLAs~~~~~r~~Iv~~~~~--~~~~l~~ 156 (164)
. ....+.+-++++.+.++.. +.+|+.|+|-. |+.+...+++++- +++||+-
T Consensus 315 ~---~l~~~~sw~~S~d~~l~t~-g~LaigNfaR~-D~~ci~~v~~~~~nkL~~~l~~ 367 (604)
T KOG4500|consen 315 Q---FLDFLESWFRSDDSNLITM-GSLAIGNFARR-DDICIQLVQKDFLNKLISCLMQ 367 (604)
T ss_pred H---HHHHHHHHhcCCchhHHHH-HHHHHHhhhcc-chHHHHHHHHHHHHHHHHHHHH
Confidence 1 3456777787777778777 55699999876 6678888888884 8888864
No 44
>KOG4500|consensus
Probab=88.17 E-value=4.4 Score=37.30 Aligned_cols=103 Identities=15% Similarity=0.178 Sum_probs=69.8
Q ss_pred HHhcChhHHHHHHHhhcccCCHHHHHHHHHHHHHhccchhhHHHHHhcChHHHHHHHh-hc-cc--hhhhhH-HHHHHHH
Q psy4705 12 NMIVSEDVIKIYEANKDKVESDNTRELLARILNALASQQELRGLMVQQGASKALIHLA-HN-GT--VKGKRQ-AAQGLAR 86 (164)
Q Consensus 12 nli~~~~vi~~l~v~l~k~~S~~~k~~~~~il~~Ls~~~~~R~~ivqqGai~~Ll~l~-~~-gt--~~~~~~-A~~ALak 86 (164)
.+-..+.+.+.++.+ .++...+....-+-.+.|+++.++++-.++++|-+..|++.. ++ +. +..+.+ +..||.+
T Consensus 309 ~L~~~p~~l~~~~sw-~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRn 387 (604)
T KOG4500|consen 309 KLHADPQFLDFLESW-FRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRN 387 (604)
T ss_pred HHhcCcHHHHHHHHH-hcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHh
Confidence 334444466655333 344455556667778999999999999999999999999954 42 22 122333 4889999
Q ss_pred HhCcCCCCcccCCCCcccchHHHHhccCC
Q psy4705 87 LGITLNPEVAFPGERSLEVVRPLLSLLHP 115 (164)
Q Consensus 87 LlIs~nP~l~f~~~~~~~av~pL~~LL~~ 115 (164)
+.|.....--|-+....++|=|...+=.|
T Consensus 388 l~IPv~nka~~~~aGvteaIL~~lk~~~p 416 (604)
T KOG4500|consen 388 LMIPVSNKAHFAPAGVTEAILLQLKLASP 416 (604)
T ss_pred ccccCCchhhccccchHHHHHHHHHhcCC
Confidence 99988887777655555666555554443
No 45
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=87.47 E-value=3.4 Score=36.47 Aligned_cols=107 Identities=23% Similarity=0.339 Sum_probs=77.9
Q ss_pred hhHHHHHHHHHHhcChhHHHHHH---------Hhhccc-CCHHHHHHHHHHHHHhccchhhHHHHHhcChHHHHHHHhhc
Q psy4705 2 LRRAATQTMTNMIVSEDVIKIYE---------ANKDKV-ESDNTRELLARILNALASQQELRGLMVQQGASKALIHLAHN 71 (164)
Q Consensus 2 ~~~aa~~~l~nli~~~~vi~~l~---------v~l~k~-~S~~~k~~~~~il~~Ls~~~~~R~~ivqqGai~~Ll~l~~~ 71 (164)
+|.|+-+.++-++.++..+..+. -.+.+. .++.-|+|+-|.+..+.+-++.. .-.-.|-++.++.++..
T Consensus 41 vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~-~~~~~~vvralvaiae~ 119 (371)
T PF14664_consen 41 VRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGP-KEIPRGVVRALVAIAEH 119 (371)
T ss_pred HHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCc-ccCCHHHHHHHHHHHhC
Confidence 57888899999999998888773 112232 24556899999888777664322 22366788888988877
Q ss_pred cchhhhhHHHHHHHHHhCcCCCCcccCCCCcccchHHHHhccC
Q psy4705 72 GTVKGKRQAAQGLARLGITLNPEVAFPGERSLEVVRPLLSLLH 114 (164)
Q Consensus 72 gt~~~~~~A~~ALakLlIs~nP~l~f~~~~~~~av~pL~~LL~ 114 (164)
..+.-+..+..-|+.|++ .||.+++. .+++++|.+.+-
T Consensus 120 ~~D~lr~~cletL~El~l-~~P~lv~~----~gG~~~L~~~l~ 157 (371)
T PF14664_consen 120 EDDRLRRICLETLCELAL-LNPELVAE----CGGIRVLLRALI 157 (371)
T ss_pred CchHHHHHHHHHHHHHHh-hCHHHHHH----cCCHHHHHHHHH
Confidence 777788888999998876 58888874 457788888443
No 46
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=86.28 E-value=12 Score=31.53 Aligned_cols=106 Identities=24% Similarity=0.271 Sum_probs=67.7
Q ss_pred hHHHHHHHHHHhcChhHHHHHHHhhcccCCHHHHHHHHHHHHHhccchhhHHHHHhcChHHHHHHHhh-ccchhhhhHHH
Q psy4705 3 RRAATQTMTNMIVSEDVIKIYEANKDKVESDNTRELLARILNALASQQELRGLMVQQGASKALIHLAH-NGTVKGKRQAA 81 (164)
Q Consensus 3 ~~aa~~~l~nli~~~~vi~~l~v~l~k~~S~~~k~~~~~il~~Ls~~~~~R~~ivqqGai~~Ll~l~~-~gt~~~~~~A~ 81 (164)
|..|+..+.. +-.+.+++.+ ..+....++.+|..++..+..+=.+ -++..|+++.. ......+..|+
T Consensus 60 r~~aa~~l~~-~~~~~av~~l-~~~l~d~~~~vr~~a~~aLg~~~~~----------~a~~~li~~l~~d~~~~vR~~aa 127 (335)
T COG1413 60 RLSAAVALGE-LGSEEAVPLL-RELLSDEDPRVRDAAADALGELGDP----------EAVPPLVELLENDENEGVRAAAA 127 (335)
T ss_pred HHHHHHHHhh-hchHHHHHHH-HHHhcCCCHHHHHHHHHHHHccCCh----------hHHHHHHHHHHcCCcHhHHHHHH
Confidence 4455555333 4445677766 5777777788888877644433322 25677777665 35566778889
Q ss_pred HHHHHHhCcCCCCcccCCCCcccchHHHHhccCCCc----------c-hHHHHHHHHHHHccc
Q psy4705 82 QGLARLGITLNPEVAFPGERSLEVVRPLLSLLHPEA----------T-ALETFEGLMALCNLA 133 (164)
Q Consensus 82 ~ALakLlIs~nP~l~f~~~~~~~av~pL~~LL~~~~----------~-~l~~fEaLlALTNLA 133 (164)
++|+++. ...++.||++++..+. . ..+.+.+..+|.++-
T Consensus 128 ~aL~~~~-------------~~~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~~ 177 (335)
T COG1413 128 RALGKLG-------------DERALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGELG 177 (335)
T ss_pred HHHHhcC-------------chhhhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHHcC
Confidence 9999881 1335779999887322 1 246777888887775
No 47
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=85.51 E-value=2.1 Score=26.58 Aligned_cols=43 Identities=19% Similarity=0.222 Sum_probs=29.0
Q ss_pred hhHHHHHHHHHHhcC---------hhHHHHHHHhhcccCCHHHHHHHHHHHHH
Q psy4705 2 LRRAATQTMTNMIVS---------EDVIKIYEANKDKVESDNTRELLARILNA 45 (164)
Q Consensus 2 ~~~aa~~~l~nli~~---------~~vi~~l~v~l~k~~S~~~k~~~~~il~~ 45 (164)
.|++|+.++-++... +++++.+ ..+.+..++.+|..++..|.+
T Consensus 3 vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L-~~~L~d~~~~VR~~A~~aLg~ 54 (55)
T PF13513_consen 3 VRRAAAWALGRLAEGCPELLQPYLPELLPAL-IPLLQDDDDSVRAAAAWALGN 54 (55)
T ss_dssp HHHHHHHHHHCTTTTTHHHHHHHHHHHHHHH-HHHTTSSSHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhhHhcccHHHHHHHHHHHHHHH-HHHHcCCCHHHHHHHHHHHhc
Confidence 688999998876422 3455555 456677777888877776654
No 48
>KOG2160|consensus
Probab=85.37 E-value=7.5 Score=34.25 Aligned_cols=103 Identities=17% Similarity=0.156 Sum_probs=79.7
Q ss_pred CHHHHHHHHHHHHHhccchhhHHHHHhcChHHHHHHHhhccchhhhhHHHHHHHHHhCcCCCCcc-cCCCCcccchHHHH
Q psy4705 32 SDNTRELLARILNALASQQELRGLMVQQGASKALIHLAHNGTVKGKRQAAQGLARLGITLNPEVA-FPGERSLEVVRPLL 110 (164)
Q Consensus 32 S~~~k~~~~~il~~Ls~~~~~R~~ivqqGai~~Ll~l~~~gt~~~~~~A~~ALakLlIs~nP~l~-f~~~~~~~av~pL~ 110 (164)
+...|+-+-.-|-.++++=++--.+++-||...|+..........|..|++.++... ..||..+ +- --.++.+.|+
T Consensus 96 ~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~-qNNP~~Qe~v--~E~~~L~~Ll 172 (342)
T KOG2160|consen 96 DLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAV-QNNPKSQEQV--IELGALSKLL 172 (342)
T ss_pred CHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHH-hcCHHHHHHH--HHcccHHHHH
Confidence 577788888889999999999999999999999999777777888999999999875 5566542 21 1134888999
Q ss_pred hccCCCcchHHHHHHHHHHHcccCCCh
Q psy4705 111 SLLHPEATALETFEGLMALCNLAAIGE 137 (164)
Q Consensus 111 ~LL~~~~~~l~~fEaLlALTNLAs~~~ 137 (164)
..+..+.+..-+-.||-|+++|=-...
T Consensus 173 ~~ls~~~~~~~r~kaL~AissLIRn~~ 199 (342)
T KOG2160|consen 173 KILSSDDPNTVRTKALFAISSLIRNNK 199 (342)
T ss_pred HHHccCCCchHHHHHHHHHHHHHhcCc
Confidence 988766665556678888887755444
No 49
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=84.23 E-value=7.1 Score=34.62 Aligned_cols=126 Identities=16% Similarity=0.112 Sum_probs=77.9
Q ss_pred hhHHHHHHHHHHhcChhHHHHHH---HhhcccCCHHHHHHHHHHHHHhccchhhHHHHHhcChHHHHHHHhhccchhhhh
Q psy4705 2 LRRAATQTMTNMIVSEDVIKIYE---ANKDKVESDNTRELLARILNALASQQELRGLMVQQGASKALIHLAHNGTVKGKR 78 (164)
Q Consensus 2 ~~~aa~~~l~nli~~~~vi~~l~---v~l~k~~S~~~k~~~~~il~~Ls~~~~~R~~ivqqGai~~Ll~l~~~gt~~~~~ 78 (164)
+|-.|..+++++. .++..+.+. ..+....++.+|..++-.++.+.....+ .++.+-+..+..+..+..+....
T Consensus 95 ~~~lAL~~l~~i~-~~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~---~~~~~~~~~l~~lL~d~~~~V~~ 170 (526)
T PF01602_consen 95 IRGLALRTLSNIR-TPEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPD---LVEDELIPKLKQLLSDKDPSVVS 170 (526)
T ss_dssp HHHHHHHHHHHH--SHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHC---CHHGGHHHHHHHHTTHSSHHHHH
T ss_pred HHHHHHhhhhhhc-ccchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHH---HHHHHHHHHHhhhccCCcchhHH
Confidence 5677888888865 445555432 4556778899999988888888765222 33332355666666555566667
Q ss_pred HHHHHHHHHhCcCCCCcccCCCCcccchHHHHh----ccCCCcchHHHHHHHHHHHcccCCChHHH
Q psy4705 79 QAAQGLARLGITLNPEVAFPGERSLEVVRPLLS----LLHPEATALETFEGLMALCNLAAIGEKQR 140 (164)
Q Consensus 79 ~A~~ALakLlIs~nP~l~f~~~~~~~av~pL~~----LL~~~~~~l~~fEaLlALTNLAs~~~~~r 140 (164)
.|..++..+ ..+|...- ..+++++. ++. +.+...+...+..|++++..++...
T Consensus 171 ~a~~~l~~i--~~~~~~~~------~~~~~~~~~L~~~l~-~~~~~~q~~il~~l~~~~~~~~~~~ 227 (526)
T PF01602_consen 171 AALSLLSEI--KCNDDSYK------SLIPKLIRILCQLLS-DPDPWLQIKILRLLRRYAPMEPEDA 227 (526)
T ss_dssp HHHHHHHHH--HCTHHHHT------THHHHHHHHHHHHHT-CCSHHHHHHHHHHHTTSTSSSHHHH
T ss_pred HHHHHHHHH--ccCcchhh------hhHHHHHHHhhhccc-ccchHHHHHHHHHHHhcccCChhhh
Confidence 777777777 44544310 23444444 333 5555556668888888877665544
No 50
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=83.54 E-value=8.6 Score=32.56 Aligned_cols=70 Identities=21% Similarity=0.271 Sum_probs=52.2
Q ss_pred hHHHHHHHHHHhcChhHHH----------------HHHHhhcccCCHHHHHHHHHHHHHhccchh--hHHHHHhcChHHH
Q psy4705 3 RRAATQTMTNMIVSEDVIK----------------IYEANKDKVESDNTRELLARILNALASQQE--LRGLMVQQGASKA 64 (164)
Q Consensus 3 ~~aa~~~l~nli~~~~vi~----------------~l~v~l~k~~S~~~k~~~~~il~~Ls~~~~--~R~~ivqqGai~~ 64 (164)
||=|.|+||.|.+.++.+. .+.-.+...+.+-.||.+.-+|.+|+.-++ .|..-.|.+++..
T Consensus 141 qrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i~~ 220 (257)
T PF12031_consen 141 QRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCISH 220 (257)
T ss_pred HHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchHHH
Confidence 5778999999977755443 331224566788999999999999998865 5666667799999
Q ss_pred HHHHhhcc
Q psy4705 65 LIHLAHNG 72 (164)
Q Consensus 65 Ll~l~~~g 72 (164)
|+.+....
T Consensus 221 Li~FiE~a 228 (257)
T PF12031_consen 221 LIAFIEDA 228 (257)
T ss_pred HHHHHHHH
Confidence 99876543
No 51
>KOG1293|consensus
Probab=82.64 E-value=9.4 Score=36.35 Aligned_cols=125 Identities=14% Similarity=0.122 Sum_probs=84.2
Q ss_pred hHHHHHHHHHH----------hcChhHHHHHHHhhcccCCHHHHHHHHHHHHHhccc-hhhHHHHHhcChHHHHHHHhhc
Q psy4705 3 RRAATQTMTNM----------IVSEDVIKIYEANKDKVESDNTRELLARILNALASQ-QELRGLMVQQGASKALIHLAHN 71 (164)
Q Consensus 3 ~~aa~~~l~nl----------i~~~~vi~~l~v~l~k~~S~~~k~~~~~il~~Ls~~-~~~R~~ivqqGai~~Ll~l~~~ 71 (164)
++||-.|+.+. ..+.+|..++ +.+.-.++-.++..+--++-||+.+ .+.|....+.||+..|++...+
T Consensus 394 ~aaa~l~~~s~srsV~aL~tg~~~~dv~~pl-vqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~ 472 (678)
T KOG1293|consen 394 VAAALLCLKSFSRSVSALRTGLKRNDVAQPL-VQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTD 472 (678)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCccchhHHHH-HHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcC
Confidence 45555555554 4446677776 6777667777777777788999988 7899999999999999998776
Q ss_pred cchhhhhHHHHHHHHHhCcCCCCcccCCCCcccchHHHHhccCCCcc---hHHHHHHHHHHHccc
Q psy4705 72 GTVKGKRQAAQGLARLGITLNPEVAFPGERSLEVVRPLLSLLHPEAT---ALETFEGLMALCNLA 133 (164)
Q Consensus 72 gt~~~~~~A~~ALakLlIs~nP~l~f~~~~~~~av~pL~~LL~~~~~---~l~~fEaLlALTNLA 133 (164)
.-...+..+..+|-++.-+.+-...|-.++.. --+.+..+++ |.+ +.|.|.- |-||.
T Consensus 473 ~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki-~a~~i~~l~n-d~d~~Vqeq~fql---lRNl~ 532 (678)
T KOG1293|consen 473 PDFNSRANSLWVLRHLMFNCDEEEKFQLLAKI-PANLILDLIN-DPDWAVQEQCFQL---LRNLT 532 (678)
T ss_pred CCchHHHHHHHHHHHHHhcchHHHHHHHHHHh-hHHHHHHHHh-CCCHHHHHHHHHH---HHHhh
Confidence 66666777888998887777766555322111 2235666776 443 3455544 34554
No 52
>KOG1048|consensus
Probab=80.76 E-value=5.8 Score=38.14 Aligned_cols=130 Identities=12% Similarity=0.054 Sum_probs=79.3
Q ss_pred hcChhHHHHHHHhhcccCCHHHHHHHHHHHHHhccch---hhHHHHHhcChHHHHHHHhhc-cchhhhhHHHHHHHHHhC
Q psy4705 14 IVSEDVIKIYEANKDKVESDNTRELLARILNALASQQ---ELRGLMVQQGASKALIHLAHN-GTVKGKRQAAQGLARLGI 89 (164)
Q Consensus 14 i~~~~vi~~l~v~l~k~~S~~~k~~~~~il~~Ls~~~---~~R~~ivqqGai~~Ll~l~~~-gt~~~~~~A~~ALakLlI 89 (164)
+-+-|.|+.+ +.+.+..+++++.++.-.+-||+... ++.-.|..++|+..++++.+. +-.+.+......|=||
T Consensus 271 vrqlggI~kL-v~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNL-- 347 (717)
T KOG1048|consen 271 VRQLGGIPKL-VALLDHRNDEVQRQACGALRNLVFGKSTDSNKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNL-- 347 (717)
T ss_pred HHHhccHHHH-HHHhcCCcHHHHHHHHHHHHhhhcccCCcccchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcc--
Confidence 5556777887 89999999999999999999999874 479999999999999998864 3333343344444444
Q ss_pred cCCCCcccCCCCcccchHHHHh-ccCCCc------------chHHHHHHHHHHHcccCCChHHHHHHHhccc
Q psy4705 90 TLNPEVAFPGERSLEVVRPLLS-LLHPEA------------TALETFEGLMALCNLAAIGEKQRQRKKLNFR 148 (164)
Q Consensus 90 s~nP~l~f~~~~~~~av~pL~~-LL~~~~------------~~l~~fEaLlALTNLAs~~~~~r~~Iv~~~~ 148 (164)
+++..+-- .-+.+++.-|.+ .+-|-. +..--|.+.-.|-|+.|.+++.|++--+..+
T Consensus 348 SS~D~lK~--~ii~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~G 417 (717)
T KOG1048|consen 348 SSNDALKM--LIITSALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFRNVTGCLRNLSSAGQEAREQMRECDG 417 (717)
T ss_pred cchhHHHH--HHHHHHHHHHHHhhcccccccCCCCcccccccceeeehhhhhhccccchhHHHHHHHhhccc
Confidence 22211100 001223333332 111100 0112344556777888877777777755443
No 53
>KOG2122|consensus
Probab=80.23 E-value=18 Score=38.03 Aligned_cols=112 Identities=16% Similarity=0.172 Sum_probs=74.8
Q ss_pred hhHHHHHHHHHH-----------hcChhHHHHHHHhhcccCCHHHHHHHHHHHHHhccchh--hHHHHHhcChHHHHHHH
Q psy4705 2 LRRAATQTMTNM-----------IVSEDVIKIYEANKDKVESDNTRELLARILNALASQQE--LRGLMVQQGASKALIHL 68 (164)
Q Consensus 2 ~~~aa~~~l~nl-----------i~~~~vi~~l~v~l~k~~S~~~k~~~~~il~~Ls~~~~--~R~~ivqqGai~~Ll~l 68 (164)
|||=|.-+|.|| +...|.+..+ |.-+.+.+++..+-++-+|-||+=..+ ....+-.-|-+..|...
T Consensus 367 LRrYa~MALTNLTFGDv~NKa~LCs~rgfMeav-VAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~ 445 (2195)
T KOG2122|consen 367 LRRYAGMALTNLTFGDVANKATLCSQRGFMEAV-VAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAAC 445 (2195)
T ss_pred HHHHHHHHhhccccccccchhhhhhhhhHHHHH-HHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHH
Confidence 788888888888 5667888887 777888899999999999999997743 45555556888888774
Q ss_pred hhccch-hhhhHHHHHHHHHhCcC-CCCcccCCCCcccchHHHHhccCCC
Q psy4705 69 AHNGTV-KGKRQAAQGLARLGITL-NPEVAFPGERSLEVVRPLLSLLHPE 116 (164)
Q Consensus 69 ~~~gt~-~~~~~A~~ALakLlIs~-nP~l~f~~~~~~~av~pL~~LL~~~ 116 (164)
.-.... ..-+....||=+|..+. ...-.|= .+.+|..+|+.+|..+
T Consensus 446 al~~~kEsTLKavLSALWNLSAHcteNKA~iC--aVDGALaFLVg~LSY~ 493 (2195)
T KOG2122|consen 446 ALRNKKESTLKAVLSALWNLSAHCTENKAEIC--AVDGALAFLVGTLSYE 493 (2195)
T ss_pred HHHhcccchHHHHHHHHhhhhhcccccchhhh--cccchHHHHHhhcccc
Confidence 422221 11122367777774322 2222221 2456888888888754
No 54
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=79.85 E-value=6.7 Score=28.63 Aligned_cols=58 Identities=14% Similarity=0.138 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHhccc-hhhHHHHHhcChHHHHHHHh--hccchhhhhHHHHHHHHHhCcCC
Q psy4705 35 TRELLARILNALASQ-QELRGLMVQQGASKALIHLA--HNGTVKGKRQAAQGLARLGITLN 92 (164)
Q Consensus 35 ~k~~~~~il~~Ls~~-~~~R~~ivqqGai~~Ll~l~--~~gt~~~~~~A~~ALakLlIs~n 92 (164)
.|..+.+++.+|+.+ +.....+.+-||+..+++.. ....|-.+..|.-|+-+|+-...
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~ 62 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNP 62 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCH
Confidence 366778999999988 67889999999999999843 34456777878888888754433
No 55
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=77.93 E-value=9.7 Score=35.97 Aligned_cols=143 Identities=15% Similarity=0.128 Sum_probs=90.9
Q ss_pred hHHHHHHHHHHhc----------ChhHHHHHHHhhcccCCHHHHHHHHHHHHHhccch--hhHHHHHhcChHHHHHHHhh
Q psy4705 3 RRAATQTMTNMIV----------SEDVIKIYEANKDKVESDNTRELLARILNALASQQ--ELRGLMVQQGASKALIHLAH 70 (164)
Q Consensus 3 ~~aa~~~l~nli~----------~~~vi~~l~v~l~k~~S~~~k~~~~~il~~Ls~~~--~~R~~ivqqGai~~Ll~l~~ 70 (164)
.--+|...||.++ ..+++..+ +.+..+.-+..+....-++.++.-+. +..-+..+.=|+.-++++..
T Consensus 448 ~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl-~~~v~sKDdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~N 526 (743)
T COG5369 448 EFPDTIDICNKVVPFSNLGAGFLEKSIIDVL-VNLVMSKDDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTN 526 (743)
T ss_pred eccchhhhhheeeeccchHHHHHHhhHHHHH-HHHhhcchhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhc
Confidence 3346778888843 36677777 55544445566666667777777663 33444555545666677777
Q ss_pred ccchhhhhHHHHHHHHHhCcCCC----CcccCCCCccc-chHHHHhccCCCcchHHHHHHHHHHHcccCCChHHHHHHHh
Q psy4705 71 NGTVKGKRQAAQGLARLGITLNP----EVAFPGERSLE-VVRPLLSLLHPEATALETFEGLMALCNLAAIGEKQRQRKKL 145 (164)
Q Consensus 71 ~gt~~~~~~A~~ALakLlIs~nP----~l~f~~~~~~~-av~pL~~LL~~~~~~l~~fEaLlALTNLAs~~~~~r~~Iv~ 145 (164)
..|-...-.-.|.|.+...++.- .-+|.+..+.+ -.+.|++-++ ..+..+..|.+--|-|+|..+++.++-|.+
T Consensus 527 Dpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk~l~~k~e-~~np~~i~~~~yilv~~aa~d~~l~~~V~~ 605 (743)
T COG5369 527 DPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFKRLIDKYE-ENNPMEILEGCYILVRNAACDDTLDYIVQS 605 (743)
T ss_pred CcccccHHHHHHHHHhcccccccccccceeEEecChHHHHHHHHHHHHH-hcCchhhhhhHHHHHHHHhccchHHHHHHh
Confidence 76665555568999999773332 23444433333 4445555555 445577778888999999998888877776
Q ss_pred cc
Q psy4705 146 NF 147 (164)
Q Consensus 146 ~~ 147 (164)
+.
T Consensus 606 q~ 607 (743)
T COG5369 606 QE 607 (743)
T ss_pred HH
Confidence 54
No 56
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=77.86 E-value=17 Score=28.70 Aligned_cols=86 Identities=19% Similarity=0.176 Sum_probs=50.2
Q ss_pred hhHHHHHHHHHHhcChh----HHHHHHHhhcccCCHHHHHHHHHHHHHhccchh-hHHHHHhcChHHHHHH----Hhhcc
Q psy4705 2 LRRAATQTMTNMIVSED----VIKIYEANKDKVESDNTRELLARILNALASQQE-LRGLMVQQGASKALIH----LAHNG 72 (164)
Q Consensus 2 ~~~aa~~~l~nli~~~~----vi~~l~v~l~k~~S~~~k~~~~~il~~Ls~~~~-~R~~ivqqGai~~Ll~----l~~~g 72 (164)
++.+|.+++..++.+-. ++..+.....+..|+.+|..++..+..+...-. ....+-..+.++.+.+ ...++
T Consensus 110 i~~~a~~~L~~i~~~~~~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~ 189 (228)
T PF12348_consen 110 IREAANNALDAIIESCSYSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDA 189 (228)
T ss_dssp HHHHHHHHHHHHHTTS-H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCC
Confidence 57888999988866544 423233556777899999999998888877644 2222333333444443 44566
Q ss_pred chhhhhHHHHHHHHH
Q psy4705 73 TVKGKRQAAQGLARL 87 (164)
Q Consensus 73 t~~~~~~A~~ALakL 87 (164)
.++.|..|.+++..+
T Consensus 190 ~~~VR~~Ar~~~~~l 204 (228)
T PF12348_consen 190 DPEVREAARECLWAL 204 (228)
T ss_dssp -HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 677777776666666
No 57
>KOG2973|consensus
Probab=77.86 E-value=17 Score=31.98 Aligned_cols=83 Identities=23% Similarity=0.238 Sum_probs=55.0
Q ss_pred hhHHHHHHHHHHhcC---------hhHHHHHHHhhcccCCHHHHHHHHHHHHHhccchhhHHHHHhcChHHHHHHHhhcc
Q psy4705 2 LRRAATQTMTNMIVS---------EDVIKIYEANKDKVESDNTRELLARILNALASQQELRGLMVQQGASKALIHLAHNG 72 (164)
Q Consensus 2 ~~~aa~~~l~nli~~---------~~vi~~l~v~l~k~~S~~~k~~~~~il~~Ls~~~~~R~~ivqqGai~~Ll~l~~~g 72 (164)
.|+||++-+.++..+ +.-++.+ ..+.+ .++. -+++++++.|++.+++.|-.+.+. =++.++...-+.
T Consensus 19 v~~~AV~~l~~lt~~~~~~~~~~~~~~lk~l-~qL~~-~~~~-~~~a~~alVnlsq~~~l~~~ll~~-~~k~l~~~~~~p 94 (353)
T KOG2973|consen 19 VRKAAVEHLLGLTGRGLQSLSKYSEALLKDL-TQLLK-DLDP-AEPAATALVNLSQKEELRKKLLQD-LLKVLMDMLTDP 94 (353)
T ss_pred HHHHHHHHHhhccccchhhhccchhhhHHHH-HHHcc-Cccc-ccHHHHHHHHHHhhHHHHHHHHHH-HHHHHHHHhcCc
Confidence 588999999999888 5555544 34433 2333 567789999999999999999998 555555544333
Q ss_pred chhhhhHHHHHHHHHh
Q psy4705 73 TVKGKRQAAQGLARLG 88 (164)
Q Consensus 73 t~~~~~~A~~ALakLl 88 (164)
+...-..+...|.++.
T Consensus 95 ~~~lad~~cmlL~NLs 110 (353)
T KOG2973|consen 95 QSPLADLICMLLSNLS 110 (353)
T ss_pred ccchHHHHHHHHHHhc
Confidence 3222233455666653
No 58
>PF05536 Neurochondrin: Neurochondrin
Probab=77.76 E-value=29 Score=32.20 Aligned_cols=126 Identities=17% Similarity=0.100 Sum_probs=78.5
Q ss_pred HhhcccCCHHHHHHHHHHHHHhccchh----hHHHHHhcChHHHHHHHhhccc-------hhhhhHHHHHHHHHhCcCCC
Q psy4705 25 ANKDKVESDNTRELLARILNALASQQE----LRGLMVQQGASKALIHLAHNGT-------VKGKRQAAQGLARLGITLNP 93 (164)
Q Consensus 25 v~l~k~~S~~~k~~~~~il~~Ls~~~~----~R~~ivqqGai~~Ll~l~~~gt-------~~~~~~A~~ALakLlIs~nP 93 (164)
..+.|...|..|=..--.+-.+....+ .|..+...=|.+.|-.+.+++. ..-+..|...|+-.+ ++|
T Consensus 11 ~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~--~~~ 88 (543)
T PF05536_consen 11 LSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC--RDP 88 (543)
T ss_pred HHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc--CCh
Confidence 355666666665444444555655543 3556777777899888887643 223455666666664 477
Q ss_pred CcccCCCCcccchHHHHhccCCCcchHHHHHHHHHHHcccCCChHHHHHHHhccch--hHhhh
Q psy4705 94 EVAFPGERSLEVVRPLLSLLHPEATALETFEGLMALCNLAAIGEKQRQRKKLNFRP--FVSCL 154 (164)
Q Consensus 94 ~l~f~~~~~~~av~pL~~LL~~~~~~l~~fEaLlALTNLAs~~~~~r~~Iv~~~~~--~~~~l 154 (164)
.+.-. +...+-||.|++.+...++..-.-+++-.|.++++.++ -++.+++.+.. +.+.+
T Consensus 89 ~~a~~-~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~-G~~aLl~~g~v~~L~ei~ 149 (543)
T PF05536_consen 89 ELASS-PQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPE-GAKALLESGAVPALCEII 149 (543)
T ss_pred hhhcC-HHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcH-hHHHHHhcCCHHHHHHHH
Confidence 77643 34577899999988633332445556667777777644 47777776653 44443
No 59
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=76.18 E-value=5.1 Score=22.28 Aligned_cols=28 Identities=25% Similarity=0.208 Sum_probs=22.1
Q ss_pred HHHHHHhhcccCCHHHHHHHHHHHHHhcc
Q psy4705 20 IKIYEANKDKVESDNTRELLARILNALAS 48 (164)
Q Consensus 20 i~~l~v~l~k~~S~~~k~~~~~il~~Ls~ 48 (164)
+|.+ ..+....++.+|+.+++.|..+++
T Consensus 2 lp~l-~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPIL-LQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHH-HHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHH-HHHcCCCCHHHHHHHHHHHHHHHh
Confidence 5666 577788899999999999988764
No 60
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=75.79 E-value=10 Score=33.58 Aligned_cols=67 Identities=21% Similarity=0.166 Sum_probs=48.6
Q ss_pred HHHHHHHhhcccCCHHHHHHHHHHHHHhccchhhHHHHHhcChHHHHHHHhhccchhhhhHHHHHHHHHhCcC
Q psy4705 19 VIKIYEANKDKVESDNTRELLARILNALASQQELRGLMVQQGASKALIHLAHNGTVKGKRQAAQGLARLGITL 91 (164)
Q Consensus 19 vi~~l~v~l~k~~S~~~k~~~~~il~~Ls~~~~~R~~ivqqGai~~Ll~l~~~gt~~~~~~A~~ALakLlIs~ 91 (164)
.++.+ ..+.++.++.+.-.+++.+..+..++. .-+.++..|..+..+..+..+..+.++|..+....
T Consensus 232 ~i~~l-~~~l~s~~~~V~~e~~~~i~~l~~~~~-----~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~ 298 (526)
T PF01602_consen 232 IIEPL-LNLLQSSSPSVVYEAIRLIIKLSPSPE-----LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSN 298 (526)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHHHHHHHSSSHH-----HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC
T ss_pred HHHHH-HHHhhccccHHHHHHHHHHHHhhcchH-----HHHhhHHHHHHHhhcccchhehhHHHHHHHhhccc
Confidence 44444 344556677777778888888887776 55667778888777666668888899998887665
No 61
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=70.31 E-value=18 Score=30.73 Aligned_cols=74 Identities=18% Similarity=0.143 Sum_probs=50.7
Q ss_pred hhhhHHHHHHHHHhCcCCCCcccCCCCccc----chHHHHhccCCCcchHHHHHHHHHHHcccCCChHHHHHHHhccc
Q psy4705 75 KGKRQAAQGLARLGITLNPEVAFPGERSLE----VVRPLLSLLHPEATALETFEGLMALCNLAAIGEKQRQRKKLNFR 148 (164)
Q Consensus 75 ~~~~~A~~ALakLlIs~nP~l~f~~~~~~~----av~pL~~LL~~~~~~l~~fEaLlALTNLAs~~~~~r~~Iv~~~~ 148 (164)
..+++|.++|.||.|..+.--.+-.+.+.+ -+..|+.+|....+..-..=|+.-|.|||.-++..+..|..+..
T Consensus 139 SPqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~ 216 (257)
T PF12031_consen 139 SPQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKP 216 (257)
T ss_pred CHHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhc
Confidence 346789999999999888765443333222 66677888874444433333888999999887777766766644
No 62
>KOG2171|consensus
Probab=68.76 E-value=33 Score=34.57 Aligned_cols=98 Identities=22% Similarity=0.248 Sum_probs=63.0
Q ss_pred ccCCHHHHHHHHHHHHHhccchhhHHHHHhcChHHHHHH-Hhh---cc-----------c-----hhhhhHHHHHHHHHh
Q psy4705 29 KVESDNTRELLARILNALASQQELRGLMVQQGASKALIH-LAH---NG-----------T-----VKGKRQAAQGLARLG 88 (164)
Q Consensus 29 k~~S~~~k~~~~~il~~Ls~~~~~R~~ivqqGai~~Ll~-l~~---~g-----------t-----~~~~~~A~~ALakLl 88 (164)
+.-.+.+|..+..++..+++...--.+.-+. -+..|+. +.. +. + +.....|.|+|.+++
T Consensus 259 ~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~-~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA 337 (1075)
T KOG2171|consen 259 KELENSIRHLALEFLVSLSEYAPAMCKKLAL-LGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLA 337 (1075)
T ss_pred ccccHHHHHHHHHHHHHHHHhhHHHhhhchh-hhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHH
Confidence 3345888889989998888883222222223 3333333 111 10 0 224678999999999
Q ss_pred CcCCCCcccCCCCcccchHHHHhccCCCcchHHHHHHHHHHHccc
Q psy4705 89 ITLNPEVAFPGERSLEVVRPLLSLLHPEATALETFEGLMALCNLA 133 (164)
Q Consensus 89 Is~nP~l~f~~~~~~~av~pL~~LL~~~~~~l~~fEaLlALTNLA 133 (164)
++-+|+.+|+. ..+.+-.+|. +.+-.+++=|||||.=++
T Consensus 338 ~~L~g~~v~p~-----~~~~l~~~l~-S~~w~~R~AaL~Als~i~ 376 (1075)
T KOG2171|consen 338 LHLGGKQVLPP-----LFEALEAMLQ-STEWKERHAALLALSVIA 376 (1075)
T ss_pred hcCChhhehHH-----HHHHHHHHhc-CCCHHHHHHHHHHHHHHH
Confidence 99999998861 1222233555 677789999999997765
No 63
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=68.04 E-value=84 Score=28.19 Aligned_cols=25 Identities=20% Similarity=0.118 Sum_probs=12.6
Q ss_pred HHHHHHhhccchhhhhHHHHHHHHH
Q psy4705 63 KALIHLAHNGTVKGKRQAAQGLARL 87 (164)
Q Consensus 63 ~~Ll~l~~~gt~~~~~~A~~ALakL 87 (164)
+.|+.+.+...+..+..|+++|.++
T Consensus 150 ~~L~~~L~d~d~~Vra~A~raLG~l 174 (410)
T TIGR02270 150 PALEAALTHEDALVRAAALRALGEL 174 (410)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHhh
Confidence 3444444444444555566666554
No 64
>KOG0168|consensus
Probab=66.92 E-value=18 Score=35.77 Aligned_cols=119 Identities=14% Similarity=0.095 Sum_probs=79.3
Q ss_pred hHHHHHHHhhcccC-CHHHHHHHHHHHHHhccc-hhhHHHHHhcChHHHHHH-HhhccchhhhhHHHHHHHHHhCcCCCC
Q psy4705 18 DVIKIYEANKDKVE-SDNTRELLARILNALASQ-QELRGLMVQQGASKALIH-LAHNGTVKGKRQAAQGLARLGITLNPE 94 (164)
Q Consensus 18 ~vi~~l~v~l~k~~-S~~~k~~~~~il~~Ls~~-~~~R~~ivqqGai~~Ll~-l~~~gt~~~~~~A~~ALakLlIs~nP~ 94 (164)
-++|.+ +.+.+.+ +....-++.|.+++|++- +...+.+|..|+++.|++ |..-.+-..-.+..|||-+|.--++-.
T Consensus 211 slvp~L-v~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~A 289 (1051)
T KOG0168|consen 211 SLVPVL-VALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPKA 289 (1051)
T ss_pred HHHHHH-HHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccHH
Confidence 345555 7777666 578899999999999998 899999999999999987 333223223344678888887666655
Q ss_pred cccCCCC-------------cc-cchHHHHhccCC--CcchHHHHHHHHHHHcccCCCh
Q psy4705 95 VAFPGER-------------SL-EVVRPLLSLLHP--EATALETFEGLMALCNLAAIGE 137 (164)
Q Consensus 95 l~f~~~~-------------~~-~av~pL~~LL~~--~~~~l~~fEaLlALTNLAs~~~ 137 (164)
++-.|.- +. -|+.-..+.+.. +.+---..|+|=-||||-+..|
T Consensus 290 iL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~v~ealPlL~~lLs~~D 348 (1051)
T KOG0168|consen 290 ILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFHFVMEALPLLTPLLSYQD 348 (1051)
T ss_pred HHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhhcc
Confidence 5443320 00 134444443331 2233567899999999988755
No 65
>PTZ00429 beta-adaptin; Provisional
Probab=66.84 E-value=1.1e+02 Score=29.86 Aligned_cols=49 Identities=12% Similarity=0.083 Sum_probs=37.8
Q ss_pred ChhHHHHHHHHHHh-------cChhHHHHHHHhhcccCCHHHHHHHHHHHHHhccch
Q psy4705 1 MLRRAATQTMTNMI-------VSEDVIKIYEANKDKVESDNTRELLARILNALASQQ 50 (164)
Q Consensus 1 ~~~~aa~~~l~nli-------~~~~vi~~l~v~l~k~~S~~~k~~~~~il~~Ls~~~ 50 (164)
+.|++|+-|+..+. ...+.++.+ .++....++.+...+..+|..+....
T Consensus 155 YVRKtAalai~Kly~~~pelv~~~~~~~~L-~~LL~D~dp~Vv~nAl~aL~eI~~~~ 210 (746)
T PTZ00429 155 YVRKTAAMGLGKLFHDDMQLFYQQDFKKDL-VELLNDNNPVVASNAAAIVCEVNDYG 210 (746)
T ss_pred HHHHHHHHHHHHHHhhCcccccccchHHHH-HHHhcCCCccHHHHHHHHHHHHHHhC
Confidence 46899999999873 244667776 56777788999999988998887654
No 66
>KOG1789|consensus
Probab=66.14 E-value=30 Score=35.67 Aligned_cols=79 Identities=18% Similarity=0.249 Sum_probs=60.5
Q ss_pred HHHHHHHhcChhHHHHHHHhhcccCCHHHHHHHHHHHHHhccchhhHHHHHhcChHHHHHHH-hhccchhhhhHHHHHHH
Q psy4705 7 TQTMTNMIVSEDVIKIYEANKDKVESDNTRELLARILNALASQQELRGLMVQQGASKALIHL-AHNGTVKGKRQAAQGLA 85 (164)
Q Consensus 7 ~~~l~nli~~~~vi~~l~v~l~k~~S~~~k~~~~~il~~Ls~~~~~R~~ivqqGai~~Ll~l-~~~gt~~~~~~A~~ALa 85 (164)
..|+-||..+ ++...++ .+.- .-|+.|+.+-.+||.|+.+.+..-+-.+.||+--++++ ..+..++++-.|+.-|+
T Consensus 1803 ~~Cv~~~a~~-~vL~~LL-~lLH-S~PS~R~~vL~vLYAL~S~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLla 1879 (2235)
T KOG1789|consen 1803 KECVTDLATC-NVLTTLL-TLLH-SQPSMRARVLDVLYALSSNGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLA 1879 (2235)
T ss_pred cHHHHHHHhh-hHHHHHH-HHHh-cChHHHHHHHHHHHHHhcCcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHH
Confidence 3566666555 5777663 3322 24778899999999999999999999999999888874 35556788888899999
Q ss_pred HHh
Q psy4705 86 RLG 88 (164)
Q Consensus 86 kLl 88 (164)
|+-
T Consensus 1880 Kl~ 1882 (2235)
T KOG1789|consen 1880 KLQ 1882 (2235)
T ss_pred Hhh
Confidence 993
No 67
>KOG0301|consensus
Probab=65.85 E-value=42 Score=32.35 Aligned_cols=104 Identities=19% Similarity=0.246 Sum_probs=52.7
Q ss_pred CCHHHHHHHHHHHHHhccchhhHHHHHhcChHHHHHHHhhccchhhhhHHHHHHHHHhCcCCCCcccCCCC-cccchH--
Q psy4705 31 ESDNTRELLARILNALASQQELRGLMVQQGASKALIHLAHNGTVKGKRQAAQGLARLGITLNPEVAFPGER-SLEVVR-- 107 (164)
Q Consensus 31 ~S~~~k~~~~~il~~Ls~~~~~R~~ivqqGai~~Ll~l~~~gt~~~~~~A~~ALakLlIs~nP~l~f~~~~-~~~av~-- 107 (164)
+.+.-+=.+.|+|.|+-.++..|.-+..+ ...++...-++.......-..|+|.++.+ =++.+-... -.+..+
T Consensus 600 ~~~an~ll~vR~L~N~f~~~~g~~~~~s~--~~~i~~~~~~~~s~~~knl~ia~atlaln--~sv~l~~~~~~~~~~~~l 675 (745)
T KOG0301|consen 600 ADPANQLLVVRCLANLFSNPAGRELFMSR--LESILDPVIEASSLSNKNLQIALATLALN--YSVLLIQDNEQLEGKEVL 675 (745)
T ss_pred cchhHHHHHHHHHHHhccCHHHHHHHHHH--HHHHhhhhhhhhcccchhHHHHHHHHHHH--HHHHHHhcccccchHHHH
Confidence 34555667889999999997777666555 22222211111111101113344443322 111111111 022222
Q ss_pred --HHHhccCCCcchHHHHHHHHHHHcccCCChH
Q psy4705 108 --PLLSLLHPEATALETFEGLMALCNLAAIGEK 138 (164)
Q Consensus 108 --pL~~LL~~~~~~l~~fEaLlALTNLAs~~~~ 138 (164)
.+..++++..+..-.|.+|+||.||++.++.
T Consensus 676 ~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~~~~ 708 (745)
T KOG0301|consen 676 LSAISTLLEPVDDLEAIYRLLVALGTLMTVDAS 708 (745)
T ss_pred HHHHHhhcccchhHHHHHHHHHHHHhhccccHH
Confidence 2233555444555699999999999998653
No 68
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=65.04 E-value=82 Score=26.33 Aligned_cols=118 Identities=25% Similarity=0.317 Sum_probs=64.7
Q ss_pred hhHHHHHHHHHHhcChhHHHHHHHhhcc-cCCHHHHHHHHHHHHHhccchhhHH---------------------HHHhc
Q psy4705 2 LRRAATQTMTNMIVSEDVIKIYEANKDK-VESDNTRELLARILNALASQQELRG---------------------LMVQQ 59 (164)
Q Consensus 2 ~~~aa~~~l~nli~~~~vi~~l~v~l~k-~~S~~~k~~~~~il~~Ls~~~~~R~---------------------~ivqq 59 (164)
+|..|+.++-++ ..+..++.+ +...+ .++..+|..+++.|..+-.....-. ..++.
T Consensus 90 vr~~a~~aLg~~-~~~~a~~~l-i~~l~~d~~~~vR~~aa~aL~~~~~~~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~ 167 (335)
T COG1413 90 VRDAAADALGEL-GDPEAVPPL-VELLENDENEGVRAAAARALGKLGDERALDPLLEALQDEDSGSAAAALDAALLDVRA 167 (335)
T ss_pred HHHHHHHHHHcc-CChhHHHHH-HHHHHcCCcHhHHHHHHHHHHhcCchhhhHHHHHHhccchhhhhhhhccchHHHHHH
Confidence 466666654443 344566665 45444 5777888877777766544431000 01222
Q ss_pred ChHHH------------HHHHhhccchhhhhHHHHHHHHHhCcCCCCcccCCCCcccchHHHHhccCCCcchHHHHHHHH
Q psy4705 60 GASKA------------LIHLAHNGTVKGKRQAAQGLARLGITLNPEVAFPGERSLEVVRPLLSLLHPEATALETFEGLM 127 (164)
Q Consensus 60 Gai~~------------Ll~l~~~gt~~~~~~A~~ALakLlIs~nP~l~f~~~~~~~av~pL~~LL~~~~~~l~~fEaLl 127 (164)
.++.. +.+.........+..|+.+|..+.... ..+++.+...+. +.+......++.
T Consensus 168 ~a~~~l~~~~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~-----------~~~~~~l~~~~~-~~~~~vr~~~~~ 235 (335)
T COG1413 168 AAAEALGELGDPEAIPLLIELLEDEDADVRRAAASALGQLGSEN-----------VEAADLLVKALS-DESLEVRKAALL 235 (335)
T ss_pred HHHHHHHHcCChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch-----------hhHHHHHHHHhc-CCCHHHHHHHHH
Confidence 22222 222233344556777888888885543 123445555665 566667777777
Q ss_pred HHHccc
Q psy4705 128 ALCNLA 133 (164)
Q Consensus 128 ALTNLA 133 (164)
+|.+.-
T Consensus 236 ~l~~~~ 241 (335)
T COG1413 236 ALGEIG 241 (335)
T ss_pred HhcccC
Confidence 777664
No 69
>KOG4646|consensus
Probab=64.85 E-value=12 Score=29.58 Aligned_cols=73 Identities=14% Similarity=0.054 Sum_probs=52.0
Q ss_pred hcChhHHHHHHHhhcccCCHHHHHHHHHHHHHhccchhhHHHHHhcChHHHHHHHhhccchhhhhHHHHHHHHH
Q psy4705 14 IVSEDVIKIYEANKDKVESDNTRELLARILNALASQQELRGLMVQQGASKALIHLAHNGTVKGKRQAAQGLARL 87 (164)
Q Consensus 14 i~~~~vi~~l~v~l~k~~S~~~k~~~~~il~~Ls~~~~~R~~ivqqGai~~Ll~l~~~gt~~~~~~A~~ALakL 87 (164)
+-.-+|...| ++.....++-.++..+--|-|+|-|+.+...|..+||+...+....+..+..-..|+-.|.-+
T Consensus 54 Lrql~vLdlF-vdsl~e~ne~LvefgIgglCNlC~d~~n~~~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l 126 (173)
T KOG4646|consen 54 LRQLDVLDLF-VDSLEEQNELLVEFGIGGLCNLCLDKTNAKFIREALGLPLIIFVLSSPPEITVHSAALFLQLL 126 (173)
T ss_pred HHHhhHHHHH-HHHhhcccHHHHHHhHHHHHhhccChHHHHHHHHhcCCceEEeecCCChHHHHHHHHHHHHHh
Confidence 3446788888 677777888889988889999999999999999999998766533222222223344444444
No 70
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=61.54 E-value=34 Score=25.66 Aligned_cols=71 Identities=13% Similarity=0.192 Sum_probs=41.1
Q ss_pred HHHHHHHhhc-ccCCHHHHHHHHHHHHHhccc-hhhHHHHHhcChHHHHHHHhhccchhhhhHHHHHHHHHhCc
Q psy4705 19 VIKIYEANKD-KVESDNTRELLARILNALASQ-QELRGLMVQQGASKALIHLAHNGTVKGKRQAAQGLARLGIT 90 (164)
Q Consensus 19 vi~~l~v~l~-k~~S~~~k~~~~~il~~Ls~~-~~~R~~ivqqGai~~Ll~l~~~gt~~~~~~A~~ALakLlIs 90 (164)
+++.+ +.+. ++..+.+...+.-=|..+++. |..|..+-+-|+-..++++.....++.+..|..++.++..+
T Consensus 44 llk~L-~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~ 116 (119)
T PF11698_consen 44 LLKKL-IKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMVN 116 (119)
T ss_dssp HHHHH-HHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-HHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 44444 4444 222233333333333444444 55566555556666777888777788999999999998643
No 71
>KOG3678|consensus
Probab=59.05 E-value=42 Score=31.58 Aligned_cols=102 Identities=20% Similarity=0.165 Sum_probs=68.4
Q ss_pred CHHHHHHHHHHHHHhcc-chhhHHHHHhcChHHHHHHHhhccchhhhhHHHHHHHHHhCcCCCCcccCCCCccc--chHH
Q psy4705 32 SDNTRELLARILNALAS-QQELRGLMVQQGASKALIHLAHNGTVKGKRQAAQGLARLGITLNPEVAFPGERSLE--VVRP 108 (164)
Q Consensus 32 S~~~k~~~~~il~~Ls~-~~~~R~~ivqqGai~~Ll~l~~~gt~~~~~~A~~ALakLlIs~nP~l~f~~~~~~~--av~p 108 (164)
...+....+-+|-++-. ..+....++..||+...+--.+...+..-++++-||++++.+.--...- ++.+ +-.-
T Consensus 235 ~~e~aR~~~~il~~mFKHSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qr---rmveKr~~EW 311 (832)
T KOG3678|consen 235 PVELARSVAGILEHMFKHSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQR---RMVEKRAAEW 311 (832)
T ss_pred cHHHHHHHHHHHHHHhhhhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHH---HHHHhhhhhh
Confidence 34444444456655544 4678889999999988775445445677788999999998877633221 1121 3334
Q ss_pred HHhccCCCcchHHHHHHHHHHHcccCCCh
Q psy4705 109 LLSLLHPEATALETFEGLMALCNLAAIGE 137 (164)
Q Consensus 109 L~~LL~~~~~~l~~fEaLlALTNLAs~~~ 137 (164)
|+.|-- +.+.+-.|.|.+|..-|++..+
T Consensus 312 LF~LA~-skDel~R~~AClAV~vlat~KE 339 (832)
T KOG3678|consen 312 LFPLAF-SKDELLRLHACLAVAVLATNKE 339 (832)
T ss_pred hhhhhc-chHHHHHHHHHHHHhhhhhhhh
Confidence 555554 5678889999999999998744
No 72
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=57.93 E-value=30 Score=28.30 Aligned_cols=106 Identities=19% Similarity=0.218 Sum_probs=61.7
Q ss_pred CCHHHHHHHHHHHHHhccchhhHHHHHhcChHHHHHHHhh---cc----chhhhhHHHHHHHHHhCc--CCCCcccCCCC
Q psy4705 31 ESDNTRELLARILNALASQQELRGLMVQQGASKALIHLAH---NG----TVKGKRQAAQGLARLGIT--LNPEVAFPGER 101 (164)
Q Consensus 31 ~S~~~k~~~~~il~~Ls~~~~~R~~ivqqGai~~Ll~l~~---~g----t~~~~~~A~~ALakLlIs--~nP~l~f~~~~ 101 (164)
.++..+=.+.|++.|+-..+..|..+.+... ..+++... .. ....+.-++..+-++++. .++. ....
T Consensus 122 ~~~~~~ml~lR~l~NlF~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~---~~~~ 197 (268)
T PF08324_consen 122 SPPANQMLALRLLANLFSHPPGRQLLLSHFD-SSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRS---DEEW 197 (268)
T ss_dssp SSHHHHHHHHHHHHHHTTSCCCHHHHHCTHH-TCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS----CCH
T ss_pred CcHHHHHHHHHHHHHhhCCCccHHHHHhccc-chHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCC---ChHH
Confidence 5678888899999999999999988888765 22232221 11 122233334444444222 1221 1001
Q ss_pred cccchHHHHh-ccCCCcchHHHHHHHHHHHcccCCChHHH
Q psy4705 102 SLEVVRPLLS-LLHPEATALETFEGLMALCNLAAIGEKQR 140 (164)
Q Consensus 102 ~~~av~pL~~-LL~~~~~~l~~fEaLlALTNLAs~~~~~r 140 (164)
..+.+.-+.+ +.....+..-.|..|+||+||.+.++..+
T Consensus 198 ~~~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~~~~ 237 (268)
T PF08324_consen 198 QSELLSSIIEVLSREESDEEALYRLLVALGTLLSSSDSAK 237 (268)
T ss_dssp HHHHHHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSHHHH
T ss_pred HHHHHHHHHHHhccccCCHHHHHHHHHHHHHHhccChhHH
Confidence 1224445555 44433466778999999999998876433
No 73
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=55.63 E-value=1.6e+02 Score=26.81 Aligned_cols=110 Identities=9% Similarity=-0.055 Sum_probs=68.4
Q ss_pred HHHHHHHHHHhcChhH---------HHHHHHhhcccCC--HHHHHHHHHHHHHhccchhhHHHHHhcChHHHHHHHhhcc
Q psy4705 4 RAATQTMTNMIVSEDV---------IKIYEANKDKVES--DNTRELLARILNALASQQELRGLMVQQGASKALIHLAHNG 72 (164)
Q Consensus 4 ~aa~~~l~nli~~~~v---------i~~l~v~l~k~~S--~~~k~~~~~il~~Ls~~~~~R~~ivqqGai~~Ll~l~~~g 72 (164)
.-+++|+.+|+..++. ++.+ +.+.+..+ -+..=++.-++--||.+++......+.|-++.|+.+.+..
T Consensus 162 ~~~v~~L~~LL~~~~~R~~f~~~~~v~~L-~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s 240 (429)
T cd00256 162 QTAARCLQMLLRVDEYRFAFVLADGVPTL-VKLLSNATLGFQLQYQSIFCIWLLTFNPHAAEVLKRLSLIQDLSDILKES 240 (429)
T ss_pred HHHHHHHHHHhCCchHHHHHHHccCHHHH-HHHHhhccccHHHHHHHHHHHHHHhccHHHHHhhccccHHHHHHHHHHhh
Confidence 4467888888554444 4444 44444322 3444456667788899988777788889999999987654
Q ss_pred c-hhhhhHHHHHHHHHhCcCC---CCcccCCCCcccchHHHHhccC
Q psy4705 73 T-VKGKRQAAQGLARLGITLN---PEVAFPGERSLEVVRPLLSLLH 114 (164)
Q Consensus 73 t-~~~~~~A~~ALakLlIs~n---P~l~f~~~~~~~av~pL~~LL~ 114 (164)
. ++.-+.+...|.+++-... |...|........+++++..|.
T Consensus 241 ~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~ 286 (429)
T cd00256 241 TKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLE 286 (429)
T ss_pred hhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHh
Confidence 4 5666778889999875442 2211211112225677777665
No 74
>KOG1824|consensus
Probab=51.99 E-value=1.7e+02 Score=29.81 Aligned_cols=42 Identities=29% Similarity=0.186 Sum_probs=27.9
Q ss_pred HhcChHHHHHHHhhc------------------------cchhhhhHHHHHHHHHhCcCCCCcccC
Q psy4705 57 VQQGASKALIHLAHN------------------------GTVKGKRQAAQGLARLGITLNPEVAFP 98 (164)
Q Consensus 57 vqqGai~~Ll~l~~~------------------------gt~~~~~~A~~ALakLlIs~nP~l~f~ 98 (164)
..+|++..|.++... .++..|..+.--|-.++++++|...++
T Consensus 451 t~~~cf~lL~eli~~lp~~l~~~~~slvpgI~~~l~DkSsss~~ki~~L~fl~~~L~s~~p~~fhp 516 (1233)
T KOG1824|consen 451 TRQGCFLLLTELINVLPGALAQHIPSLVPGIIYSLNDKSSSSNLKIDALVFLYSALISHPPEVFHP 516 (1233)
T ss_pred chhhHHHHHHHHHHhCcchhhhcccccchhhhhhcCCccchHHHHHHHHHHHHHHHhcCChhhccc
Confidence 678888888775421 123456666666777788888887555
No 75
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=48.24 E-value=28 Score=18.79 Aligned_cols=22 Identities=14% Similarity=0.326 Sum_probs=17.1
Q ss_pred ChhHHHHHHHHHHhcChhHHHHH
Q psy4705 1 MLRRAATQTMTNMIVSEDVIKIY 23 (164)
Q Consensus 1 ~~~~aa~~~l~nli~~~~vi~~l 23 (164)
++|++|+.+|-++ -++..++.+
T Consensus 2 ~vR~~aa~aLg~~-~~~~a~~~L 23 (30)
T smart00567 2 LVRHEAAFALGQL-GDEEAVPAL 23 (30)
T ss_pred HHHHHHHHHHHHc-CCHhHHHHH
Confidence 4688899998875 667777776
No 76
>KOG1293|consensus
Probab=47.48 E-value=1.1e+02 Score=29.42 Aligned_cols=89 Identities=15% Similarity=0.115 Sum_probs=58.1
Q ss_pred ChhHHHHHHHHHHhcC----------hhHHHHHHHhhcccCCHHHHHHHHHHHHHhccchhh--HHHHHhcChHHHHHHH
Q psy4705 1 MLRRAATQTMTNMIVS----------EDVIKIYEANKDKVESDNTRELLARILNALASQQEL--RGLMVQQGASKALIHL 68 (164)
Q Consensus 1 ~~~~aa~~~l~nli~~----------~~vi~~l~v~l~k~~S~~~k~~~~~il~~Ls~~~~~--R~~ivqqGai~~Ll~l 68 (164)
|+..+++.++||+++. -|.|+.+ ..+..+.-.++|.....+|+++..+.++ .-+.-+.=+...+..+
T Consensus 434 ~i~~~~lgai~NlVmefs~~kskfl~~ngId~l-~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l 512 (678)
T KOG1293|consen 434 MIMGITLGAICNLVMEFSNLKSKFLRNNGIDIL-ESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDL 512 (678)
T ss_pred hHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHH-HHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHH
Confidence 4678999999999554 5666766 4666667788999999999999988543 2222222222333444
Q ss_pred hhccchhhhhHHHHHHHHHhCc
Q psy4705 69 AHNGTVKGKRQAAQGLARLGIT 90 (164)
Q Consensus 69 ~~~gt~~~~~~A~~ALakLlIs 90 (164)
....+......+.|-|.++...
T Consensus 513 ~nd~d~~Vqeq~fqllRNl~c~ 534 (678)
T KOG1293|consen 513 INDPDWAVQEQCFQLLRNLTCN 534 (678)
T ss_pred HhCCCHHHHHHHHHHHHHhhcC
Confidence 4455555555667777777555
No 77
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=46.57 E-value=1.7e+02 Score=24.42 Aligned_cols=101 Identities=16% Similarity=0.140 Sum_probs=61.8
Q ss_pred hcccCCHHHHHHHHHHHHHhccchhhHHHHHhcChHHHHHHHhhccchhhhhHHHHHHHHHhCcCCCCcccCCCC-----
Q psy4705 27 KDKVESDNTRELLARILNALASQQELRGLMVQQGASKALIHLAHNGTVKGKRQAAQGLARLGITLNPEVAFPGER----- 101 (164)
Q Consensus 27 l~k~~S~~~k~~~~~il~~Ls~~~~~R~~ivqqGai~~Ll~l~~~gt~~~~~~A~~ALakLlIs~nP~l~f~~~~----- 101 (164)
-.++..+.+|+.+.+.+.-.|--++ +++.+- +..+.....++.+..+..|.+++-.++....+...-....
T Consensus 35 ~v~~~~~~vR~~al~cLGl~~Lld~---~~a~~~-l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~ 110 (298)
T PF12719_consen 35 AVQSSDPAVRELALKCLGLCCLLDK---ELAKEH-LPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESDNDESV 110 (298)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHhCh---HHHHHH-HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhccCccc
Confidence 3466678888888888877666544 344443 4455554566678888899999999998888764322211
Q ss_pred -cccchHHHHhccCCCcchHHHHHHHHHHHcc
Q psy4705 102 -SLEVVRPLLSLLHPEATALETFEGLMALCNL 132 (164)
Q Consensus 102 -~~~av~pL~~LL~~~~~~l~~fEaLlALTNL 132 (164)
..+.++.+...+..+ +..-+.-|.-++..|
T Consensus 111 ~~~~l~~~l~~~l~~~-~~~~~~~a~EGl~KL 141 (298)
T PF12719_consen 111 DSKSLLKILTKFLDSE-NPELQAIAVEGLCKL 141 (298)
T ss_pred hHhHHHHHHHHHHhcC-CHHHHHHHHHHHHHH
Confidence 123555666666533 322333455555554
No 78
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=46.19 E-value=61 Score=29.20 Aligned_cols=65 Identities=17% Similarity=0.211 Sum_probs=44.8
Q ss_pred hHHHHHHHHHHhcC-hhHHHHHH--------HhhcccC-----CHHHHHHHHHHHHHhccc-hhhHHHHHhc-ChHHHHH
Q psy4705 3 RRAATQTMTNMIVS-EDVIKIYE--------ANKDKVE-----SDNTRELLARILNALASQ-QELRGLMVQQ-GASKALI 66 (164)
Q Consensus 3 ~~aa~~~l~nli~~-~~vi~~l~--------v~l~k~~-----S~~~k~~~~~il~~Ls~~-~~~R~~ivqq-Gai~~Ll 66 (164)
.+.|-.|+||.+.+ +.....+. ++..+.. ++...=...|+++.++-. .+.|.+++++ +++..++
T Consensus 49 ~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~ 128 (446)
T PF10165_consen 49 SREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLT 128 (446)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHH
Confidence 46799999999665 22333331 3334444 567777888999888764 7789999988 7777777
Q ss_pred H
Q psy4705 67 H 67 (164)
Q Consensus 67 ~ 67 (164)
.
T Consensus 129 ~ 129 (446)
T PF10165_consen 129 E 129 (446)
T ss_pred H
Confidence 6
No 79
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=46.13 E-value=1.4e+02 Score=23.32 Aligned_cols=96 Identities=15% Similarity=0.100 Sum_probs=47.0
Q ss_pred hhHHHHHHHhhcccCCHHHHHHHHHHHHHhccchhhHHHHHhcChHHHHHHHhhccchhhhhHHHHHHHHHhCcCC-CCc
Q psy4705 17 EDVIKIYEANKDKVESDNTRELLARILNALASQQELRGLMVQQGASKALIHLAHNGTVKGKRQAAQGLARLGITLN-PEV 95 (164)
Q Consensus 17 ~~vi~~l~v~l~k~~S~~~k~~~~~il~~Ls~~~~~R~~ivqqGai~~Ll~l~~~gt~~~~~~A~~ALakLlIs~n-P~l 95 (164)
+.++|.+ ......++...++.+..+|..++..-..-..+. ...+........+..|..+++.|..++...+ +.-
T Consensus 93 ~~~l~~L-l~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~~----~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~ 167 (228)
T PF12348_consen 93 DILLPPL-LKKLGDSKKFIREAANNALDAIIESCSYSPKIL----LEILSQGLKSKNPQVREECAEWLAIILEKWGSDSS 167 (228)
T ss_dssp HHHHHHH-HHGGG---HHHHHHHHHHHHHHHTTS-H--HHH----HHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----G
T ss_pred HHHHHHH-HHHHccccHHHHHHHHHHHHHHHHHCCcHHHHH----HHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHh
Confidence 3344444 455555667778888888888777643111111 2233333455567788888898888877777 222
Q ss_pred ccCCCC-cccchHHHHhccCCCcc
Q psy4705 96 AFPGER-SLEVVRPLLSLLHPEAT 118 (164)
Q Consensus 96 ~f~~~~-~~~av~pL~~LL~~~~~ 118 (164)
.+.... ....++.+...+. |.+
T Consensus 168 ~l~~~~~~~~l~~~l~~~l~-D~~ 190 (228)
T PF12348_consen 168 VLQKSAFLKQLVKALVKLLS-DAD 190 (228)
T ss_dssp GG--HHHHHHHHHHHHHHHT-SS-
T ss_pred hhcccchHHHHHHHHHHHCC-CCC
Confidence 232111 1235556666665 443
No 80
>KOG1242|consensus
Probab=45.61 E-value=1.7e+02 Score=27.65 Aligned_cols=128 Identities=16% Similarity=0.201 Sum_probs=71.6
Q ss_pred hhHHHHHHHHHHh--cCh----hHHHHHHHhhcccCCHHHHHHHHHHHHHhccchhhHHHHHhcChHHHHHHHhhccchh
Q psy4705 2 LRRAATQTMTNMI--VSE----DVIKIYEANKDKVESDNTRELLARILNALASQQELRGLMVQQGASKALIHLAHNGTVK 75 (164)
Q Consensus 2 ~~~aa~~~l~nli--~~~----~vi~~l~v~l~k~~S~~~k~~~~~il~~Ls~~~~~R~~ivqqGai~~Ll~l~~~gt~~ 75 (164)
.|+||..+...++ ++. .++|.+...+..+ .=+.|..+..++..++.-...--..--+-.++-|.+..-..-++
T Consensus 232 Vr~Aa~~a~kai~~~~~~~aVK~llpsll~~l~~~-kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~e 310 (569)
T KOG1242|consen 232 VREAAVEAAKAIMRCLSAYAVKLLLPSLLGSLLEA-KWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPE 310 (569)
T ss_pred hhHHHHHHHHHHHHhcCcchhhHhhhhhHHHHHHH-hhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHH
Confidence 5777777766663 223 3333332222222 33567777777777776655555554455566666655444567
Q ss_pred hhhHHHHHHHHH-hCcCCCCcccCCCCcccchHHHHhcc-CCCcchHHHHHHHHHHHcccCCCh
Q psy4705 76 GKRQAAQGLARL-GITLNPEVAFPGERSLEVVRPLLSLL-HPEATALETFEGLMALCNLAAIGE 137 (164)
Q Consensus 76 ~~~~A~~ALakL-lIs~nP~l~f~~~~~~~av~pL~~LL-~~~~~~l~~fEaLlALTNLAs~~~ 137 (164)
.+..+..+|-++ .+..||.++ .-+|-|++=+ +|.+..-..-+.|.+=|-.+.+++
T Consensus 311 vr~a~~~~l~~~~svidN~dI~-------~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~ 367 (569)
T KOG1242|consen 311 VRKAGIETLLKFGSVIDNPDIQ-------KIIPTLLDALADPSCYTPECLDSLGATTFVAEVDA 367 (569)
T ss_pred HHHHHHHHHHHHHHhhccHHHH-------HHHHHHHHHhcCcccchHHHHHhhcceeeeeeecc
Confidence 777788888888 455565542 1245555533 344344445555555555555544
No 81
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=44.66 E-value=2.4e+02 Score=25.58 Aligned_cols=130 Identities=13% Similarity=0.110 Sum_probs=77.3
Q ss_pred hHHHHHHHhh-cccCCHHHHHHHHHHHHHhccchhhHHHHHhcC------hHHHHHHHhhccchhhhhHHHHHHHHHhCc
Q psy4705 18 DVIKIYEANK-DKVESDNTRELLARILNALASQQELRGLMVQQG------ASKALIHLAHNGTVKGKRQAAQGLARLGIT 90 (164)
Q Consensus 18 ~vi~~l~v~l-~k~~S~~~k~~~~~il~~Ls~~~~~R~~ivqqG------ai~~Ll~l~~~gt~~~~~~A~~ALakLlIs 90 (164)
.....| +++ .++..+.+.+.+-..+.-|..+...|......- -..+++.+...........|...|+++. +
T Consensus 53 ~y~~~~-l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~-~ 130 (429)
T cd00256 53 QYVKTF-VNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLA-C 130 (429)
T ss_pred HHHHHH-HHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHH-h
Confidence 444555 444 344456677777677777777766666655432 3455666555544556677899999984 4
Q ss_pred CCCCcccCCCCcccchH----HHHhccCC-CcchHHHHHHHHHHHcccCCChHHHHHHHhccch--hHhhhhc
Q psy4705 91 LNPEVAFPGERSLEVVR----PLLSLLHP-EATALETFEGLMALCNLAAIGEKQRQRKKLNFRP--FVSCLGG 156 (164)
Q Consensus 91 ~nP~l~f~~~~~~~av~----pL~~LL~~-~~~~l~~fEaLlALTNLAs~~~~~r~~Iv~~~~~--~~~~l~~ 156 (164)
..|...+. +..+ -|...+.. +.+..+.+ ++-.|.+|... ++.|..++++.+. ++++|+.
T Consensus 131 ~~~~~~~~-----~~l~~~~~~l~~~l~~~~~~~~~~~-~v~~L~~LL~~-~~~R~~f~~~~~v~~L~~~L~~ 196 (429)
T cd00256 131 FGLAKMEG-----SDLDYYFNWLKEQLNNITNNDYVQT-AARCLQMLLRV-DEYRFAFVLADGVPTLVKLLSN 196 (429)
T ss_pred cCccccch-----hHHHHHHHHHHHHhhccCCcchHHH-HHHHHHHHhCC-chHHHHHHHccCHHHHHHHHhh
Confidence 44443332 1233 33344432 22334333 67788888776 6689888887663 7777764
No 82
>PF08620 RPAP1_C: RPAP1-like, C-terminal; InterPro: IPR013929 Inhibition of RNA polymerase II-associated protein 1 (RPAP1) synthesis in Saccharomyces cerevisiae (Baker's yeast) results in changes in global gene expression that are similar to those caused by the loss of the RNAPII subunit Rpb11 []. This entry represents the C-terminal region that contains the motif GLHHH. This region is conserved from yeast to humans.
Probab=40.75 E-value=42 Score=23.06 Aligned_cols=29 Identities=24% Similarity=0.267 Sum_probs=23.7
Q ss_pred HHHHHHHhhccchhhhhHHHHHHHHHhCc
Q psy4705 62 SKALIHLAHNGTVKGKRQAAQGLARLGIT 90 (164)
Q Consensus 62 i~~Ll~l~~~gt~~~~~~A~~ALakLlIs 90 (164)
+.-|..|+++..+.|+..|.+.|++|+..
T Consensus 41 i~El~~L~RSsv~~QR~~al~~L~~Il~~ 69 (73)
T PF08620_consen 41 IQELFHLSRSSVPSQRCIALQTLGRILYR 69 (73)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 44566788888899999999999999753
No 83
>KOG2025|consensus
Probab=40.34 E-value=2e+02 Score=28.33 Aligned_cols=110 Identities=18% Similarity=0.126 Sum_probs=71.4
Q ss_pred CCHHHHHHHHHHHHHhccchhhHHHHHhcChHHHHHHHhhccchhhhhHHHHHHHHHh-CcCCCCcccCCCCcccchHHH
Q psy4705 31 ESDNTRELLARILNALASQQELRGLMVQQGASKALIHLAHNGTVKGKRQAAQGLARLG-ITLNPEVAFPGERSLEVVRPL 109 (164)
Q Consensus 31 ~S~~~k~~~~~il~~Ls~~~~~R~~ivqqGai~~Ll~l~~~gt~~~~~~A~~ALakLl-Is~nP~l~f~~~~~~~av~pL 109 (164)
.+..+|-..-.+|.-++.+-..+..-+-.|-...++.=.....+..+..|.-||.++- -..||. .+++.-+
T Consensus 97 kdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~dee--------~~v~n~l 168 (892)
T KOG2025|consen 97 KDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDEE--------CPVVNLL 168 (892)
T ss_pred cchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCCc--------ccHHHHH
Confidence 3466666666666666666556666666665555554334556777889999999994 333333 3477788
Q ss_pred HhccCCCcchHHHHHHHHHHHcccCCChHHHHHHHhccchhHh
Q psy4705 110 LSLLHPEATALETFEGLMALCNLAAIGEKQRQRKKLNFRPFVS 152 (164)
Q Consensus 110 ~~LL~~~~~~l~~fEaLlALTNLAs~~~~~r~~Iv~~~~~~~~ 152 (164)
..+++.|++..=. - .||.|+ +.|+..+-.|++.+.+.-+
T Consensus 169 ~~liqnDpS~EVR--R-aaLsnI-~vdnsTlp~IveRarDV~~ 207 (892)
T KOG2025|consen 169 KDLIQNDPSDEVR--R-AALSNI-SVDNSTLPCIVERARDVSG 207 (892)
T ss_pred HHHHhcCCcHHHH--H-HHHHhh-ccCcccchhHHHHhhhhhH
Confidence 8899866653222 2 278888 4566777788887776433
No 84
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=39.50 E-value=2.7e+02 Score=24.58 Aligned_cols=94 Identities=17% Similarity=0.203 Sum_probs=58.7
Q ss_pred ChhHHHHHHHhhcccCCHHHHHHHHHHHHHhccchhhHHHHHhcChHHHHHHHhhccchhhhhHHHHHHHHHhCcCCCCc
Q psy4705 16 SEDVIKIYEANKDKVESDNTRELLARILNALASQQELRGLMVQQGASKALIHLAHNGTVKGKRQAAQGLARLGITLNPEV 95 (164)
Q Consensus 16 ~~~vi~~l~v~l~k~~S~~~k~~~~~il~~Ls~~~~~R~~ivqqGai~~Ll~l~~~gt~~~~~~A~~ALakLlIs~nP~l 95 (164)
..+++..+ +.+.....|+.|..+..++.-++--. -..+++.||++.|++...+|+-+.-..-..++-.++=+.+...
T Consensus 106 ~~~vvral-vaiae~~~D~lr~~cletL~El~l~~--P~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p~tR~ 182 (371)
T PF14664_consen 106 PRGVVRAL-VAIAEHEDDRLRRICLETLCELALLN--PELVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDSPRTRK 182 (371)
T ss_pred CHHHHHHH-HHHHhCCchHHHHHHHHHHHHHHhhC--HHHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCcchhh
Confidence 45666666 77777778888888888776666542 1346788999999997766665443334555555544443333
Q ss_pred cc-CCCCcccchHHHHhc
Q psy4705 96 AF-PGERSLEVVRPLLSL 112 (164)
Q Consensus 96 ~f-~~~~~~~av~pL~~L 112 (164)
-+ +|.+....+.|+.+.
T Consensus 183 yl~~~~dL~~l~apftd~ 200 (371)
T PF14664_consen 183 YLRPGFDLESLLAPFTDF 200 (371)
T ss_pred hhcCCccHHHHHHhhhhh
Confidence 23 233333366777776
No 85
>PTZ00429 beta-adaptin; Provisional
Probab=39.28 E-value=2.4e+02 Score=27.50 Aligned_cols=57 Identities=16% Similarity=0.314 Sum_probs=38.4
Q ss_pred chhhhhHHHHHHHHHhCcCCCCcccCCCCcccchHHHHhccCCCcchHHHHHHHHHHHcccCC
Q psy4705 73 TVKGKRQAAQGLARLGITLNPEVAFPGERSLEVVRPLLSLLHPEATALETFEGLMALCNLAAI 135 (164)
Q Consensus 73 t~~~~~~A~~ALakLlIs~nP~l~f~~~~~~~av~pL~~LL~~~~~~l~~fEaLlALTNLAs~ 135 (164)
.+-.|+.|+-+++|+ ...+|+++.. .+-++-|.+||. |.+..=...|+.+|..+...
T Consensus 153 ~pYVRKtAalai~Kl-y~~~pelv~~----~~~~~~L~~LL~-D~dp~Vv~nAl~aL~eI~~~ 209 (746)
T PTZ00429 153 DPYVRKTAAMGLGKL-FHDDMQLFYQ----QDFKKDLVELLN-DNNPVVASNAAAIVCEVNDY 209 (746)
T ss_pred CHHHHHHHHHHHHHH-HhhCcccccc----cchHHHHHHHhc-CCCccHHHHHHHHHHHHHHh
Confidence 356678899999998 4567765421 234556777887 66666677788888777543
No 86
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=38.36 E-value=45 Score=29.52 Aligned_cols=35 Identities=23% Similarity=0.253 Sum_probs=31.1
Q ss_pred HHHHHHHHHHhccchhhHHHHHhcChHHHHHHHhh
Q psy4705 36 RELLARILNALASQQELRGLMVQQGASKALIHLAH 70 (164)
Q Consensus 36 k~~~~~il~~Ls~~~~~R~~ivqqGai~~Ll~l~~ 70 (164)
-..++|.|..+=.+++++...+++||+..|+.++.
T Consensus 337 I~~v~rFLea~fsN~~~C~~FVe~GGie~LLdLl~ 371 (379)
T PF06025_consen 337 IFNVVRFLEAFFSNSDHCREFVEKGGIELLLDLLT 371 (379)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHc
Confidence 34678999999999999999999999999999764
No 87
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=37.57 E-value=3e+02 Score=24.64 Aligned_cols=25 Identities=16% Similarity=0.084 Sum_probs=10.5
Q ss_pred HHHHHHHhhccchhhhhHHHHHHHH
Q psy4705 62 SKALIHLAHNGTVKGKRQAAQGLAR 86 (164)
Q Consensus 62 i~~Ll~l~~~gt~~~~~~A~~ALak 86 (164)
...|+.+.....+..+..+..++++
T Consensus 119 ~~~L~~~L~~~~p~vR~aal~al~~ 143 (410)
T TIGR02270 119 EPWLEPLLAASEPPGRAIGLAALGA 143 (410)
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHh
Confidence 3344444443344444444444444
No 88
>KOG1789|consensus
Probab=36.67 E-value=80 Score=32.80 Aligned_cols=98 Identities=18% Similarity=0.085 Sum_probs=64.1
Q ss_pred hcChhHHHHHHHhhcccCCHHHHHHHHHHHHHhccchhhHHHHHhcChHHHHHHHhhccchhhhhHHHHHHHHHhCcCCC
Q psy4705 14 IVSEDVIKIYEANKDKVESDNTRELLARILNALASQQELRGLMVQQGASKALIHLAHNGTVKGKRQAAQGLARLGITLNP 93 (164)
Q Consensus 14 i~~~~vi~~l~v~l~k~~S~~~k~~~~~il~~Ls~~~~~R~~ivqqGai~~Ll~l~~~gt~~~~~~A~~ALakLlIs~nP 93 (164)
+-+-|-+|.+-..+.-.+|.- -..+.|+++.|++++-....+++--++..++...++.-+ .-..|+++|-|+..-...
T Consensus 2043 ip~LGylPK~~~Am~~~n~s~-P~SaiRVlH~Lsen~~C~~AMA~l~~i~~~m~~mkK~~~-~~GLA~EalkR~~~r~~~ 2120 (2235)
T KOG1789|consen 2043 LPSLGYLPKFCTAMCLQNTSA-PRSAIRVLHELSENQFCCDAMAQLPCIDGIMKSMKKQPS-LMGLAAEALKRLMKRNTG 2120 (2235)
T ss_pred CCCccchHHHHHHHHhcCCcC-cHHHHHHHHHHhhccHHHHHHhccccchhhHHHHHhcch-HHHHHHHHHHHHHHHhHH
Confidence 444566665533333333311 134569999999999999999999998888886554322 223789999998664443
Q ss_pred CcccCCCCcccchHHHHhccC
Q psy4705 94 EVAFPGERSLEVVRPLLSLLH 114 (164)
Q Consensus 94 ~l~f~~~~~~~av~pL~~LL~ 114 (164)
+++-.+- ..+.||.|+.||.
T Consensus 2121 eLVAQ~L-K~gLvpyLL~LLd 2140 (2235)
T KOG1789|consen 2121 ELVAQML-KCGLVPYLLQLLD 2140 (2235)
T ss_pred HHHHHHh-ccCcHHHHHHHhc
Confidence 4332111 2458999999997
No 89
>PF07208 DUF1414: Protein of unknown function (DUF1414); InterPro: IPR009857 This family consists of several hypothetical bacterial proteins of around 70 residues in length. Members of this family are often referred to as YejL. The function of this family is unknown.; PDB: 2JPQ_A 2JUZ_B 2JUW_B 2QTI_A 2OTA_A 2JR2_A 2JRX_A.
Probab=35.81 E-value=35 Score=21.33 Aligned_cols=24 Identities=33% Similarity=0.426 Sum_probs=17.9
Q ss_pred HHHHHHccc------CCChHHHHHHHhccc
Q psy4705 125 GLMALCNLA------AIGEKQRQRKKLNFR 148 (164)
Q Consensus 125 aLlALTNLA------s~~~~~r~~Iv~~~~ 148 (164)
+||+|.|.+ +++++.|+.|.+...
T Consensus 8 sLMvLGN~vTniln~~V~~~qR~~iAe~Fa 37 (44)
T PF07208_consen 8 SLMVLGNMVTNILNTSVPPAQRQAIAEKFA 37 (44)
T ss_dssp HHHHHHHHHHHHHHHCS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Confidence 899999986 455688888887654
No 90
>KOG2734|consensus
Probab=35.51 E-value=2.6e+02 Score=26.04 Aligned_cols=87 Identities=16% Similarity=0.198 Sum_probs=57.4
Q ss_pred HHHHHHHhcChhHHHHHHHhhcccCCHHHHHHH------HHHHHHhcc-chhhHHHHHhcChHHHHHH-Hhhc-cchhhh
Q psy4705 7 TQTMTNMIVSEDVIKIYEANKDKVESDNTRELL------ARILNALAS-QQELRGLMVQQGASKALIH-LAHN-GTVKGK 77 (164)
Q Consensus 7 ~~~l~nli~~~~vi~~l~v~l~k~~S~~~k~~~------~~il~~Ls~-~~~~R~~ivqqGai~~Ll~-l~~~-gt~~~~ 77 (164)
++.+-+.++..+|++.+ +.-.+.-++++++.+ -.++-|+.. +++...++++||-+.-|+. +-.+ ..+..|
T Consensus 165 AevLidaLvdg~vlaLL-vqnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk 243 (536)
T KOG2734|consen 165 AEVLIDALVDGQVLALL-VQNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANK 243 (536)
T ss_pred HHHHHHHHHhccHHHHH-HHHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhH
Confidence 45677778888999888 443333333333322 234445544 4778999999988877776 3322 346778
Q ss_pred hHHHHHHHHHhCcCCCC
Q psy4705 78 RQAAQGLARLGITLNPE 94 (164)
Q Consensus 78 ~~A~~ALakLlIs~nP~ 94 (164)
..|...|+-++-+.+-.
T Consensus 244 ~YasEiLaillq~s~e~ 260 (536)
T KOG2734|consen 244 QYASEILAILLQNSDEN 260 (536)
T ss_pred HHHHHHHHHHhccCchh
Confidence 89999999998888743
No 91
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=35.43 E-value=1.6e+02 Score=20.83 Aligned_cols=61 Identities=11% Similarity=0.001 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHhccchhhHHHHHhcChHHHHHHHhhccchhhhhHHHHHHHHHhCcCCCCc
Q psy4705 35 TRELLARILNALASQQELRGLMVQQGASKALIHLAHNGTVKGKRQAAQGLARLGITLNPEV 95 (164)
Q Consensus 35 ~k~~~~~il~~Ls~~~~~R~~ivqqGai~~Ll~l~~~gt~~~~~~A~~ALakLlIs~nP~l 95 (164)
..+.+...++..-.|++.|.+-...-++-.+....+..--.-...--.+|.|+.-.+||.+
T Consensus 24 ~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~V 84 (97)
T PF12755_consen 24 YLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDENV 84 (97)
T ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhH
Confidence 3444445555555555555555444444333332222111111223566777766666654
No 92
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=33.61 E-value=90 Score=23.08 Aligned_cols=42 Identities=31% Similarity=0.351 Sum_probs=33.4
Q ss_pred CHHHHHHHHHHHHHhccchhhHHHHHhcChHHHHHHHh-hccc
Q psy4705 32 SDNTRELLARILNALASQQELRGLMVQQGASKALIHLA-HNGT 73 (164)
Q Consensus 32 S~~~k~~~~~il~~Ls~~~~~R~~ivqqGai~~Ll~l~-~~gt 73 (164)
|+--.....+-+..|+..|+.=+.+++.|++..|++|. .+.+
T Consensus 59 SE~dLd~~Ik~l~~La~~P~LYp~lv~l~~v~sL~~LL~HeN~ 101 (108)
T PF08216_consen 59 SEVDLDEEIKKLSVLATAPELYPELVELGAVPSLLGLLSHENT 101 (108)
T ss_pred hHHHHHHHHHHHHHccCChhHHHHHHHcCCHHHHHHHHCCCCc
Confidence 44444566688999999999999999999999999965 3433
No 93
>KOG3678|consensus
Probab=31.64 E-value=2.8e+02 Score=26.33 Aligned_cols=71 Identities=18% Similarity=0.055 Sum_probs=40.7
Q ss_pred hhHHHHHHHhhcccCCHHHHHHHHHHHHHhccc--hhhHHHHHhcChHHHHHHHhhccchhhhhHHHHHHHHHh
Q psy4705 17 EDVIKIYEANKDKVESDNTRELLARILNALASQ--QELRGLMVQQGASKALIHLAHNGTVKGKRQAAQGLARLG 88 (164)
Q Consensus 17 ~~vi~~l~v~l~k~~S~~~k~~~~~il~~Ls~~--~~~R~~ivqqGai~~Ll~l~~~gt~~~~~~A~~ALakLl 88 (164)
.|++......+-++ -+....+.+-.|.|.+-. ++....+++..+-.-|..++.+..+..+.+|.-|.+-|.
T Consensus 263 a~~lD~vl~~~rRt-~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClAV~vla 335 (832)
T KOG3678|consen 263 AGGLDAVLYWCRRT-DPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLAVAVLA 335 (832)
T ss_pred hcccchheeecccC-CHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHHhhhh
Confidence 34444332333333 366666666666665544 566677888877777766665544555566655555553
No 94
>KOG2973|consensus
Probab=29.73 E-value=2.2e+02 Score=25.20 Aligned_cols=66 Identities=20% Similarity=0.283 Sum_probs=54.3
Q ss_pred cCCHHHHHHHHHHHHHhccchhhHHHHHhcChHHHHHHHhhccchhhhhHHHHHHHHHhCcCCCCc
Q psy4705 30 VESDNTRELLARILNALASQQELRGLMVQQGASKALIHLAHNGTVKGKRQAAQGLARLGITLNPEV 95 (164)
Q Consensus 30 ~~S~~~k~~~~~il~~Ls~~~~~R~~ivqqGai~~Ll~l~~~gt~~~~~~A~~ALakLlIs~nP~l 95 (164)
...+..|.+....|+.||.....|..+-.+|+-.++=++-+.-+++....|..-+..+++...|..
T Consensus 255 epdpdIrk~llEai~lLcaT~~GRe~lR~kgvYpilRElhk~e~ded~~~ace~vvq~Lv~~e~~~ 320 (353)
T KOG2973|consen 255 EPDPDIRKMLLEALLLLCATRAGREVLRSKGVYPILRELHKWEEDEDIREACEQVVQMLVRLEPEI 320 (353)
T ss_pred CCChHHHHHHHHHHHHHHhhhHhHHHHHhcCchHHHHHHhcCCCcHHHHHHHHHHHHHHHhccccc
Confidence 346889999999999999999999999999998887776665566666667888888888877764
No 95
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=28.31 E-value=3.8e+02 Score=22.89 Aligned_cols=44 Identities=30% Similarity=0.355 Sum_probs=29.5
Q ss_pred HHHhhccchhhhhHHHHHHHHHhCcCCC----CcccCCCCcccchHHHHhccC
Q psy4705 66 IHLAHNGTVKGKRQAAQGLARLGITLNP----EVAFPGERSLEVVRPLLSLLH 114 (164)
Q Consensus 66 l~l~~~gt~~~~~~A~~ALakLlIs~nP----~l~f~~~~~~~av~pL~~LL~ 114 (164)
+...++|..+....|+++++-++++..| ..+| .+..|+|...+.
T Consensus 92 ~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~-----~~~~~~L~~~l~ 139 (309)
T PF05004_consen 92 LKSLKKGKSEEQALAARALALLALTLGAGEDSEEIF-----EELKPVLKRILT 139 (309)
T ss_pred HHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHH-----HHHHHHHHHHHh
Confidence 3344566666667899999999999542 2233 246777777777
No 96
>TIGR01204 bioW 6-carboxyhexanoate--CoA ligase. Alternate name: pimeloyl-CoA synthase.
Probab=25.52 E-value=26 Score=29.33 Aligned_cols=15 Identities=33% Similarity=0.552 Sum_probs=12.5
Q ss_pred hHh-hhhcccccccCC
Q psy4705 150 FVS-CLGGVVVKTLDW 164 (164)
Q Consensus 150 ~~~-~l~~~~~~~~~~ 164 (164)
+.. -.|||||+.+||
T Consensus 117 Le~d~~RGVRvs~mD~ 132 (232)
T TIGR01204 117 LDEDKEKGVRVSRFDW 132 (232)
T ss_pred ccCCCCcceEEEeccc
Confidence 444 689999999999
No 97
>KOG3036|consensus
Probab=24.99 E-value=4.5e+02 Score=22.68 Aligned_cols=90 Identities=14% Similarity=0.168 Sum_probs=52.5
Q ss_pred hhHHHHHHHHHH-----------hcChhHHHHHHHhhcccCCHHHHHHHHHHHHHhccchh---------hHHHHHhcCh
Q psy4705 2 LRRAATQTMTNM-----------IVSEDVIKIYEANKDKVESDNTRELLARILNALASQQE---------LRGLMVQQGA 61 (164)
Q Consensus 2 ~~~aa~~~l~nl-----------i~~~~vi~~l~v~l~k~~S~~~k~~~~~il~~Ls~~~~---------~R~~ivqqGa 61 (164)
||=+|-+.+-.| +...+|+|.. ......||+.+|..+..|+-.+-.|+. +|=.-+..==
T Consensus 141 LRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlC-Lrime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L 219 (293)
T KOG3036|consen 141 LRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLC-LRIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVL 219 (293)
T ss_pred HhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHH-HHHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHH
Confidence 455555555555 3345666665 456778999999988888866655543 1222222211
Q ss_pred HHHHHHHhhccchhhhhHHHHHHHHHhCcCCCC
Q psy4705 62 SKALIHLAHNGTVKGKRQAAQGLARLGITLNPE 94 (164)
Q Consensus 62 i~~Ll~l~~~gt~~~~~~A~~ALakLlIs~nP~ 94 (164)
.+++..+.+.++..--++..+..-|+ +.||.
T Consensus 220 ~kmv~~l~~~ps~RllKhviRcYlrL--sdnpr 250 (293)
T KOG3036|consen 220 GKMVFQLVSMPSPRLLKHVIRCYLRL--SDNPR 250 (293)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHh--cCCHH
Confidence 23333454555555556677777777 67764
No 98
>KOG2759|consensus
Probab=24.68 E-value=1.3e+02 Score=27.47 Aligned_cols=41 Identities=12% Similarity=0.222 Sum_probs=27.0
Q ss_pred hhhHHHHHhcChHHHHHHHhhccchhhhhHHHHHHHHHhCc
Q psy4705 50 QELRGLMVQQGASKALIHLAHNGTVKGKRQAAQGLARLGIT 90 (164)
Q Consensus 50 ~~~R~~ivqqGai~~Ll~l~~~gt~~~~~~A~~ALakLlIs 90 (164)
|+.|.-+.|=||=..++++.....+..|..|..|..++.++
T Consensus 399 P~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~~ 439 (442)
T KOG2759|consen 399 PEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMVH 439 (442)
T ss_pred chHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHhh
Confidence 55566666667766777766666666777777777776543
No 99
>KOG3036|consensus
Probab=24.63 E-value=3.4e+02 Score=23.42 Aligned_cols=57 Identities=16% Similarity=0.151 Sum_probs=43.4
Q ss_pred HHHHHHHHHHhccc--hhhHHHHHhcChHHHHHHHhhccchhhhhHHHHHHHHHhCcCC
Q psy4705 36 RELLARILNALASQ--QELRGLMVQQGASKALIHLAHNGTVKGKRQAAQGLARLGITLN 92 (164)
Q Consensus 36 k~~~~~il~~Ls~~--~~~R~~ivqqGai~~Ll~l~~~gt~~~~~~A~~ALakLlIs~n 92 (164)
|=.+--+|.+|..+ ++....+...+.++.++..-..|.+..|..|...+.||+.+..
T Consensus 142 RLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrime~GSelSKtvA~fIlqKIlldD~ 200 (293)
T KOG3036|consen 142 RLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIMESGSELSKTVATFILQKILLDDV 200 (293)
T ss_pred hHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhcccHHHHHHHHHHHHHHhhccc
Confidence 43444577777765 4456667777888888888888999999999999999976654
No 100
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=23.92 E-value=2.5e+02 Score=19.29 Aligned_cols=50 Identities=22% Similarity=0.335 Sum_probs=36.4
Q ss_pred cChhHHHHHHHhhcccCCHHHHHHHHHHHHHhccchhhHHHHHhcChHHHHHHH
Q psy4705 15 VSEDVIKIYEANKDKVESDNTRELLARILNALASQQELRGLMVQQGASKALIHL 68 (164)
Q Consensus 15 ~~~~vi~~l~v~l~k~~S~~~k~~~~~il~~Ls~~~~~R~~ivqqGai~~Ll~l 68 (164)
.++++..+|+.-+....+..+|+.+.+.+..+... ++.-.++| =+.++++
T Consensus 14 fQ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~---~~~~i~SG-W~~if~i 63 (86)
T PF09324_consen 14 FQKDFLKPFEYIMSNNPSIDVRELILECILQILQS---RGENIKSG-WKVIFSI 63 (86)
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHH---hHHHHHhc-cHHHHHH
Confidence 45678889954446777899999999888888765 45666777 5655553
No 101
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=23.14 E-value=2.8e+02 Score=19.59 Aligned_cols=31 Identities=6% Similarity=0.034 Sum_probs=19.2
Q ss_pred hHHHHHHHhhcccCCHHHHHHHHHHHHHhccc
Q psy4705 18 DVIKIYEANKDKVESDNTRELLARILNALASQ 49 (164)
Q Consensus 18 ~vi~~l~v~l~k~~S~~~k~~~~~il~~Ls~~ 49 (164)
.++++. .........++|..+...|++++..
T Consensus 27 ~Il~pV-L~~~~D~d~rVRy~AcEaL~ni~k~ 57 (97)
T PF12755_consen 27 EILPPV-LKCFDDQDSRVRYYACEALYNISKV 57 (97)
T ss_pred HHHHHH-HHHcCCCcHHHHHHHHHHHHHHHHH
Confidence 444444 2444455677788888888887643
No 102
>KOG2171|consensus
Probab=22.04 E-value=8.7e+02 Score=24.98 Aligned_cols=120 Identities=18% Similarity=0.272 Sum_probs=68.3
Q ss_pred hhHHHHHHHHHHhcChhHHHHHHHhhcc-cCCHHHHHHHHHHHHHhccc------hhhHHHHHhcChHHHHHH-Hhhccc
Q psy4705 2 LRRAATQTMTNMIVSEDVIKIYEANKDK-VESDNTRELLARILNALASQ------QELRGLMVQQGASKALIH-LAHNGT 73 (164)
Q Consensus 2 ~~~aa~~~l~nli~~~~vi~~l~v~l~k-~~S~~~k~~~~~il~~Ls~~------~~~R~~ivqqGai~~Ll~-l~~~gt 73 (164)
.|+=|++++-+....+.+.+.| ..+.. +.++.+|+.++-.+..++.. .+.|..|- ..|+. +.++..
T Consensus 20 vr~~Ae~~l~~~~~~~~~l~~L-~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~~~sik-----s~lL~~~~~E~~ 93 (1075)
T KOG2171|consen 20 VRRQAEEALETLAKTEPLLPAL-AHILATSADPQVRQLAAVLLRKLLTKHWSRLSAEVQQSIK-----SSLLEIIQSETE 93 (1075)
T ss_pred HHHHHHHHHHHhhcccchHHHH-HHHHhcCCChHHHHHHHHHHHHHHHHHhhcCCHHHHHHHH-----HHHHHHHHhccc
Confidence 4788999999998888888887 56544 45688888887666555543 22233222 22333 344555
Q ss_pred hhhhhHHHHHHHHHhCcCCCCcccCCCCcccchHHHHhccCCCcchHHHHHHHHHHHcccC
Q psy4705 74 VKGKRQAAQGLARLGITLNPEVAFPGERSLEVVRPLLSLLHPEATALETFEGLMALCNLAA 134 (164)
Q Consensus 74 ~~~~~~A~~ALakLlIs~nP~l~f~~~~~~~av~pL~~LL~~~~~~l~~fEaLlALTNLAs 134 (164)
+..|..-++..|-|.-+.=|. ..| +.+++|+.=.+ +.+..-+.-|+.-|+++..
T Consensus 94 ~~vr~k~~dviAeia~~~l~e-~WP-----ell~~L~q~~~-S~~~~~rE~al~il~s~~~ 147 (1075)
T KOG2171|consen 94 PSVRHKLADVIAEIARNDLPE-KWP-----ELLQFLFQSTK-SPNPSLRESALLILSSLPE 147 (1075)
T ss_pred hHHHHHHHHHHHHHHHhcccc-chH-----HHHHHHHHHhc-CCCcchhHHHHHHHHhhhh
Confidence 555555566666665555555 222 34445555444 2333333445555555543
No 103
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=21.88 E-value=6e+02 Score=24.02 Aligned_cols=32 Identities=19% Similarity=0.136 Sum_probs=15.4
Q ss_pred hhHHHHHHHhhcccCCHHHHHHHHHHHHHhccc
Q psy4705 17 EDVIKIYEANKDKVESDNTRELLARILNALASQ 49 (164)
Q Consensus 17 ~~vi~~l~v~l~k~~S~~~k~~~~~il~~Ls~~ 49 (164)
+.++..+ .+|+..+...+|-++.|-|-.+|.+
T Consensus 58 ~~Ai~a~-~DLcEDed~~iR~~aik~lp~~ck~ 89 (556)
T PF05918_consen 58 EEAINAQ-LDLCEDEDVQIRKQAIKGLPQLCKD 89 (556)
T ss_dssp HHHHHHH-HHHHT-SSHHHHHHHHHHGGGG--T
T ss_pred HHHHHHH-HHHHhcccHHHHHHHHHhHHHHHHh
Confidence 4445544 4555555555555555555555554
No 104
>PRK01322 6-carboxyhexanoate--CoA ligase; Provisional
Probab=21.65 E-value=34 Score=28.78 Aligned_cols=12 Identities=33% Similarity=0.459 Sum_probs=11.3
Q ss_pred hhhcccccccCC
Q psy4705 153 CLGGVVVKTLDW 164 (164)
Q Consensus 153 ~l~~~~~~~~~~ 164 (164)
-.|||||+.+||
T Consensus 129 ~~RGVRvs~mD~ 140 (242)
T PRK01322 129 KERGVRVTNIDF 140 (242)
T ss_pred CCcceEEEeccC
Confidence 689999999999
No 105
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=20.68 E-value=4.6e+02 Score=22.15 Aligned_cols=79 Identities=19% Similarity=0.191 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHhccc-hhhHHHHHhcChHHHHHHHh-hccchhhhhHHHHHHHHHhCcCCCCc-ccCCCCcccchHHH
Q psy4705 33 DNTRELLARILNALASQ-QELRGLMVQQGASKALIHLA-HNGTVKGKRQAAQGLARLGITLNPEV-AFPGERSLEVVRPL 109 (164)
Q Consensus 33 ~~~k~~~~~il~~Ls~~-~~~R~~ivqqGai~~Ll~l~-~~gt~~~~~~A~~ALakLlIs~nP~l-~f~~~~~~~av~pL 109 (164)
+.....+.++|-.++-- +..|....++.++..|+.+. ...++.....+..+|.-+++..-+.. .|-. .+.+.-+
T Consensus 105 ~~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~---~~Gl~~v 181 (257)
T PF08045_consen 105 DSLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEE---LNGLSTV 181 (257)
T ss_pred hHHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHH---hCCHHHH
Confidence 33444556777666655 78899999999999999977 44566666777888888887766543 5642 3345555
Q ss_pred HhccC
Q psy4705 110 LSLLH 114 (164)
Q Consensus 110 ~~LL~ 114 (164)
+.+++
T Consensus 182 ~~llk 186 (257)
T PF08045_consen 182 CSLLK 186 (257)
T ss_pred HHHHc
Confidence 55555
No 106
>KOG4646|consensus
Probab=20.35 E-value=4.4e+02 Score=20.85 Aligned_cols=64 Identities=11% Similarity=0.020 Sum_probs=48.5
Q ss_pred hhcccCCHHHHHHHHHHHHHhccchhhHHHHHhcChHHHHHHHhhccchhhhhHHHHHHHHHhC
Q psy4705 26 NKDKVESDNTRELLARILNALASQQELRGLMVQQGASKALIHLAHNGTVKGKRQAAQGLARLGI 89 (164)
Q Consensus 26 ~l~k~~S~~~k~~~~~il~~Ls~~~~~R~~ivqqGai~~Ll~l~~~gt~~~~~~A~~ALakLlI 89 (164)
+.-.+.+...||++..=|.|++-|+.+=.-+-|--++...+.-..+..+.-+..+..+|-+++.
T Consensus 24 efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~ 87 (173)
T KOG4646|consen 24 EFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCL 87 (173)
T ss_pred HHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhcc
Confidence 3445678899999999999999999999999998888877764444445555666666766644
Done!