RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4705
(164 letters)
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin
folding and function, myosin bindi protein, protein
binding; 2.90A {Saccharomyces cerevisiae}
Length = 778
Score = 112 bits (281), Expect = 1e-29
Identities = 28/130 (21%), Positives = 49/130 (37%), Gaps = 16/130 (12%)
Query: 29 KVESDNTRELLARILNALASQQELRGLMVQQGASKALIHLAHNGTVKG---KRQAAQGLA 85
S N ++ + RI+ + + + QQGA K ++ N G + + L
Sbjct: 467 HNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALT 526
Query: 86 RLGITLNPEVAFPGERSLEVVRPLLSLL-------------HPEATALETFEGLMALCNL 132
R+ I NP + F +L + L LL + + +E L+AL NL
Sbjct: 527 RMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNL 586
Query: 133 AAIGEKQRQR 142
A+ +
Sbjct: 587 ASSETSDGEE 596
Score = 30.1 bits (67), Expect = 0.34
Identities = 11/71 (15%), Positives = 26/71 (36%), Gaps = 7/71 (9%)
Query: 1 MLRRAATQTMTNMIVSEDVIKIYEANKDKVESDNTRELLARILNALASQQELRGLMVQQG 60
L+R+ + ++NM+ I N + +S +L L ++ Q+
Sbjct: 621 PLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILV----KLLQLSDVE---SQRA 673
Query: 61 ASKALIHLAHN 71
+ ++A
Sbjct: 674 VAAIFANIATT 684
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin,
tetra-tricopeptide repeat, binding protein required for
myosin function; 2.99A {Drosophila melanogaster}
Length = 810
Score = 103 bits (256), Expect = 2e-26
Identities = 69/114 (60%), Positives = 89/114 (78%)
Query: 29 KVESDNTRELLARILNALASQQELRGLMVQQGASKALIHLAHNGTVKGKRQAAQGLARLG 88
K ES N++EL+AR+LNA+ +ELRG +VQ+G KAL+ +A GT KGKR A Q LAR+G
Sbjct: 505 KTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIG 564
Query: 89 ITLNPEVAFPGERSLEVVRPLLSLLHPEATALETFEGLMALCNLAAIGEKQRQR 142
IT+NPEV+F G+RSL+V+RPLL+LL + TALE FE LMAL NLA++ E RQR
Sbjct: 565 ITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQR 618
Score = 31.7 bits (71), Expect = 0.10
Identities = 20/138 (14%), Positives = 52/138 (37%), Gaps = 2/138 (1%)
Query: 5 AATQTMTNMIVSEDVIKIYEANKDKVESDNTRELLARILNALASQQELRGLMVQQGASKA 64
+ +++ I+ E + E + TR + N + S+ ++ K
Sbjct: 610 SMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKF 669
Query: 65 LIHLAHNGTVKGKRQAAQGLARLGITLNPEVAFPGERSLEVVRPLLSLLHPEATALETFE 124
L L + + A LA + +++ + + L +L+ + A++
Sbjct: 670 LALLCEDEDEETATACAGALAII-TSVSVKCCEKILAIASWLDILHTLIANPSPAVQH-R 727
Query: 125 GLMALCNLAAIGEKQRQR 142
G++ + N+ GE+ ++
Sbjct: 728 GIVIILNMINAGEEIAKK 745
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein,
protein transport, armadillo repeats; 2.2A {Homo
sapiens} PDB: 3tj3_A
Length = 450
Score = 43.3 bits (102), Expect = 1e-05
Identities = 22/164 (13%), Positives = 59/164 (35%), Gaps = 12/164 (7%)
Query: 1 MLRRAATQTMTNMIVSEDVIKIYEANKD---------KVESDNTRELLARILNALASQ-Q 50
+ A + + N++ +D+ N ++ ++ ++ + + +
Sbjct: 249 KVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNR 308
Query: 51 ELRGLMVQQGASKALIHLAHNGTVKGKRQAAQGLARLGITLNPEVAFPGERSLEVVRPLL 110
++ ALI + + +++AA + + E L ++PL
Sbjct: 309 AQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIK-YLVELGCIKPLC 367
Query: 111 SLLHPEATALETFEGLMALCNLAAIGEKQRQRKKLNFRPFVSCL 154
LL + + L L N+ +GE++ +R P+ + +
Sbjct: 368 DLLTVMDSKIVQ-VALNGLENILRLGEQEAKRNGTGINPYCALI 410
Score = 30.6 bits (69), Expect = 0.22
Identities = 26/134 (19%), Positives = 49/134 (36%), Gaps = 3/134 (2%)
Query: 1 MLRRAATQTMTNMIVSEDVIKIYEANKDKVESDNTRELLARILNALAS-QQELRGLMVQQ 59
+L + + +I + V+ + + E+ + A +L +AS +++Q
Sbjct: 47 LLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQA 106
Query: 60 GASKALIHLAHNGTVKGKRQAAQGLARLGITLNPEVAFPGERSLEVVRPLLSLLHPEATA 119
GA I L + + QA L I + + ++ PLL L +
Sbjct: 107 GAVPIFIELLSSEFEDVQEQAVWALGN--IAGDSTMCRDYVLDCNILPPLLQLFSKQNRL 164
Query: 120 LETFEGLMALCNLA 133
T + AL NL
Sbjct: 165 TMTRNAVWALSNLC 178
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription;
1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A
1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A
3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A
3bct_A* 3ifq_A* 3sla_A 3sl9_A
Length = 529
Score = 42.8 bits (101), Expect = 2e-05
Identities = 17/108 (15%), Positives = 35/108 (32%), Gaps = 8/108 (7%)
Query: 36 RELLARILNALASQQELRGLMVQQGASKALIHLAHNGTVKGKRQAAQGLARLGITLNPEV 95
+R+L L+ + +V+ G +AL + + + + L L +
Sbjct: 203 LWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE 262
Query: 96 AFPGERSLEVVRPLLSLL-HPEATALETFEGLMALCNLAAIGEKQRQR 142
G ++ L+ LL + + L NL K +
Sbjct: 263 GMEG-----LLGTLVQLLGSDDINVVT--CAAGILSNLTCNNYKNKMM 303
Score = 39.4 bits (92), Expect = 2e-04
Identities = 15/57 (26%), Positives = 25/57 (43%)
Query: 31 ESDNTRELLARILNALASQQELRGLMVQQGASKALIHLAHNGTVKGKRQAAQGLARL 87
+N + + A +L LA +E + +GA+ L L H+ AA L R+
Sbjct: 472 PIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM 528
Score = 37.8 bits (88), Expect = 8e-04
Identities = 24/151 (15%), Positives = 45/151 (29%), Gaps = 15/151 (9%)
Query: 2 LRRAATQTMTNMIVSEDVIKIYEANKDKVE----------SDNTRELLARILNALASQQE 51
+ A + + E + V T A L+ L+ +E
Sbjct: 33 VVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHRE 92
Query: 52 LRGLMVQQGASKALIHLAHNGTVKGKRQAAQGLARLGITLNPEVAFPGERSLEVVRPLLS 111
+ + G AL+ + + A L L L+ E A R ++ +++
Sbjct: 93 GLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNL--LLHQEGAKMAVRLAGGLQKMVA 150
Query: 112 LL-HPEATALETFEGLMALCNLAAIGEKQRQ 141
LL L L LA ++ +
Sbjct: 151 LLNKTNVKFLA--ITTDCLQILAYGNQESKL 179
Score = 35.5 bits (82), Expect = 0.004
Identities = 20/126 (15%), Positives = 33/126 (26%), Gaps = 22/126 (17%)
Query: 36 RELLARILNALASQQELRGLMVQQGASKALIHLAHNGTVKGKRQAAQGLARLGITLNPEV 95
+ ++ LA + +QGA L+ L +R+ + G + +
Sbjct: 373 IKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRM 432
Query: 96 AFPGE-------------------RSLEVVRPLLSLL-HPEATALETFEGLMALCNLAAI 135
E R L + + LL P LC LA
Sbjct: 433 EEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQR--VAAGVLCELAQD 490
Query: 136 GEKQRQ 141
E
Sbjct: 491 KEAAEA 496
Score = 32.8 bits (75), Expect = 0.039
Identities = 20/128 (15%), Positives = 40/128 (31%), Gaps = 17/128 (13%)
Query: 2 LRRAATQTMTNMIVSEDVIK--IYEAN---------KDKVESDNTRELLARILNALAS-- 48
+ A ++N+ + K + + + ++ E L L S
Sbjct: 282 VVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRH 341
Query: 49 --QQELRGLMVQQGASKALIHLAHNGTVKGKRQAAQGLARLGITLNPEVAFPGERSLEVV 106
+ + + ++ L H + +A GL R + L P P R +
Sbjct: 342 QEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRN-LALCPANHAP-LREQGAI 399
Query: 107 RPLLSLLH 114
L+ LL
Sbjct: 400 PRLVQLLV 407
Score = 31.3 bits (71), Expect = 0.12
Identities = 14/92 (15%), Positives = 30/92 (32%), Gaps = 2/92 (2%)
Query: 42 ILNALASQQELRGLMVQQGASKALIHLAHNGTVKGKRQAAQGLARLGITLNPEVAFPGER 101
+ N L Q+ + + G + ++ L + VK L L N E
Sbjct: 125 LHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYG-NQESK-LIIL 182
Query: 102 SLEVVRPLLSLLHPEATALETFEGLMALCNLA 133
+ + L++++ + L L+
Sbjct: 183 ASGGPQALVNIMRTYTYEKLLWTTSRVLKVLS 214
Score = 29.7 bits (67), Expect = 0.47
Identities = 12/77 (15%), Positives = 25/77 (32%), Gaps = 2/77 (2%)
Query: 57 VQQGASKALIHLAHNGTVKGKRQAAQGLARLGITLNPEVAFPGERSLEVVRPLLSLLHPE 116
+ A L L ++ +AA + +L + RS ++V ++ +
Sbjct: 14 LATRAIPELTKLLNDEDQVVVNKAAVMVHQL--SKKEASRHAIMRSPQMVSAIVRTMQNT 71
Query: 117 ATALETFEGLMALCNLA 133
L NL+
Sbjct: 72 NDVETARCTAGTLHNLS 88
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio
rerio}
Length = 780
Score = 42.7 bits (100), Expect = 2e-05
Identities = 23/151 (15%), Positives = 46/151 (30%), Gaps = 15/151 (9%)
Query: 2 LRRAATQTMTNMIVSEDVIKIYEANKDKVE----------SDNTRELLARILNALASQQE 51
+ A + + E + V T + L+ L+ +E
Sbjct: 166 VVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHRE 225
Query: 52 LRGLMVQQGASKALIHLAHNGTVKGKRQAAQGLARLGITLNPEVAFPGERSLEVVRPLLS 111
+ + G AL+++ + A L L L+ E A R ++ +++
Sbjct: 226 GLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNL--LLHQEGAKMAVRLAGGLQKMVA 283
Query: 112 LL-HPEATALETFEGLMALCNLAAIGEKQRQ 141
LL L L LA ++ +
Sbjct: 284 LLNKTNVKFLA--ITTDCLQILAYGNQESKL 312
Score = 42.7 bits (100), Expect = 2e-05
Identities = 15/59 (25%), Positives = 25/59 (42%)
Query: 29 KVESDNTRELLARILNALASQQELRGLMVQQGASKALIHLAHNGTVKGKRQAAQGLARL 87
+N + + A +L LA +E + +GA+ L L H+ AA L R+
Sbjct: 603 YSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM 661
Score = 40.8 bits (95), Expect = 8e-05
Identities = 20/116 (17%), Positives = 37/116 (31%), Gaps = 4/116 (3%)
Query: 28 DKVESDNTRELLARILNALASQQELRGLMVQQGASKALIHLAHNGTVKGKRQAAQGLARL 87
+ V + E L+ LA R ++ + L ++ +R AA L L
Sbjct: 561 EGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCEL 620
Query: 88 GITLNPEVAFPGERSLEVVRPLLSLLHPEATALETFEGLMALCNLAAIGEKQRQRK 143
A + PL LLH + T L ++ + +++
Sbjct: 621 AQDKEAAEAI---EAEGATAPLTELLHSRNEGVAT-YAAAVLFRMSEDKPQDYKKR 672
Score = 31.5 bits (71), Expect = 0.10
Identities = 15/97 (15%), Positives = 33/97 (34%), Gaps = 4/97 (4%)
Query: 37 ELLARILNALASQQELRGLMVQQGASKALIHLAHNGTVKGKRQAAQGLARLGITLNPEVA 96
++L + L + Q+ + A L L ++ +AA + +L +
Sbjct: 129 QMLKHAVVNLINYQD--DAELATRAIPELTKLLNDEDQVVVNKAAVMVHQL--SKKEASR 184
Query: 97 FPGERSLEVVRPLLSLLHPEATALETFEGLMALCNLA 133
RS ++V ++ + L NL+
Sbjct: 185 HAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLS 221
Score = 31.5 bits (71), Expect = 0.13
Identities = 21/116 (18%), Positives = 39/116 (33%), Gaps = 5/116 (4%)
Query: 31 ESDNTRELLARILNALASQ-QELRGLMVQQGASKALIHLAHNGTVKGKRQ--AAQGLARL 87
+ N A IL+ L + + ++ Q G +AL+ + A L L
Sbjct: 411 DDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHL 470
Query: 88 -GITLNPEVAFPGERSLEVVRPLLSLLHPEATALETFEGLMALCNLAAIGEKQRQR 142
+ E+A R + ++ LLHP + + + L A+
Sbjct: 471 TSRHQDAEMAQNAVRLHYGLPVVVKLLHPP-SHWPLIKATVGLIRNLALCPANHAP 525
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator,
alternative splicing, cell adhesion, cytoplasm,
cytoskeleton, disease mutation, nucleus; 2.20A {Homo
sapiens}
Length = 644
Score = 40.3 bits (94), Expect = 1e-04
Identities = 15/59 (25%), Positives = 25/59 (42%)
Query: 29 KVESDNTRELLARILNALASQQELRGLMVQQGASKALIHLAHNGTVKGKRQAAQGLARL 87
+N + + A +L LA +E + +GA+ L L H+ AA L R+
Sbjct: 467 YSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM 525
Score = 37.2 bits (86), Expect = 0.001
Identities = 24/151 (15%), Positives = 45/151 (29%), Gaps = 15/151 (9%)
Query: 2 LRRAATQTMTNMIVSEDVIKIYEANKDKVE----------SDNTRELLARILNALASQQE 51
+ A + + E + V T A L+ L+ +E
Sbjct: 30 VVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHRE 89
Query: 52 LRGLMVQQGASKALIHLAHNGTVKGKRQAAQGLARLGITLNPEVAFPGERSLEVVRPLLS 111
+ + G AL+ + + A L L L+ E A R ++ +++
Sbjct: 90 GLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNL--LLHQEGAKMAVRLAGGLQKMVA 147
Query: 112 LL-HPEATALETFEGLMALCNLAAIGEKQRQ 141
LL L L LA ++ +
Sbjct: 148 LLNKTNVKFLA--ITTDCLQILAYGNQESKL 176
Score = 34.5 bits (79), Expect = 0.013
Identities = 22/158 (13%), Positives = 45/158 (28%), Gaps = 18/158 (11%)
Query: 2 LRRAATQTMTNMIVSEDVIK--IYEAN---------KDKVESDNTRELLARILNALAS-- 48
+ A ++N+ + K + + + ++ E L L S
Sbjct: 279 VVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRH 338
Query: 49 --QQELRGLMVQQGASKALIHLAHNGTVKGKRQAAQGLARLGITLNPEVAFPGERSLEVV 106
+ + + ++ L H + +A GL R + L P P R +
Sbjct: 339 QEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRN-LALCPANHAP-LREQGAI 396
Query: 107 RPLLSLLHPEATALETFEGLMALCNLAAIGEKQRQRKK 144
L+ LL A M + + +
Sbjct: 397 PRLVQLLV-RAHQDTQRRTSMGGTQQQFVEGVRMEEIV 433
Score = 30.3 bits (68), Expect = 0.30
Identities = 12/78 (15%), Positives = 25/78 (32%), Gaps = 2/78 (2%)
Query: 56 MVQQGASKALIHLAHNGTVKGKRQAAQGLARLGITLNPEVAFPGERSLEVVRPLLSLLHP 115
+ A L L ++ +AA + +L + RS ++V ++ +
Sbjct: 10 ELATRAIPELTKLLNDEDQVVVNKAAVMVHQL--SKKEASRHAIMRSPQMVSAIVRTMQN 67
Query: 116 EATALETFEGLMALCNLA 133
L NL+
Sbjct: 68 TNDVETARCTAGTLHNLS 85
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A
{Synthetic construct}
Length = 252
Score = 38.8 bits (91), Expect = 3e-04
Identities = 25/112 (22%), Positives = 46/112 (41%), Gaps = 6/112 (5%)
Query: 32 SDNTRELLARILNALAS-QQELRGLMVQQGASKALIHLAHNGTVKGKRQAAQGLARLGIT 90
++ + L+ +AS E ++ GA AL+ L + + ++A L+ +
Sbjct: 109 NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNI--A 166
Query: 91 LNPEVAFPGERSLEVVRPLLSLL-HPEATALETFEGLMALCNLAAIGEKQRQ 141
+ L+ LL P L+ E L AL N+A+ G +Q+Q
Sbjct: 167 SGGNEQIQAVIDAGALPALVQLLSSPNEQILQ--EALWALSNIASGGNEQKQ 216
Score = 33.4 bits (77), Expect = 0.019
Identities = 18/89 (20%), Positives = 33/89 (37%), Gaps = 11/89 (12%)
Query: 57 VQQGASKALIHLAHNGTVKGKRQAAQGLARLGITLNP---EVAFPGERSLEVVRPLLSLL 113
+ ++ ++ + A + +++ N V G + L+ LL
Sbjct: 9 HHGSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAG-----ALPALVQLL 63
Query: 114 -HPEATALETFEGLMALCNLAAIGEKQRQ 141
P L E L AL N+A+ G +Q Q
Sbjct: 64 SSPNEQIL--QEALWALSNIASGGNEQIQ 90
Score = 31.9 bits (73), Expect = 0.057
Identities = 19/100 (19%), Positives = 37/100 (37%), Gaps = 5/100 (5%)
Query: 36 RELLARILNALASQQELRGLMVQQGASKALIHLAHNGTVKGKRQAAQGLARLGITLNPEV 95
+E L + N + E ++ GA AL+ L + + ++A L+ + + E
Sbjct: 156 QEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA-SGGNEQ 214
Query: 96 AFPGERSLEVVRPLLSLL-HPEATALETFEGLMALCNLAA 134
+ + + L L H + E AL L +
Sbjct: 215 KQAVKEA-GALEKLEQLQSHENEKIQK--EAQEALEKLQS 251
Score = 29.2 bits (66), Expect = 0.54
Identities = 28/109 (25%), Positives = 46/109 (42%), Gaps = 14/109 (12%)
Query: 40 ARILNALAS-QQELRGLMVQQGASKALIHLAHNGTVKGKRQAAQGLARLGITLNPE---- 94
L+ +AS E ++ GA AL+ L + + ++A L+ + + E
Sbjct: 75 LWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNI-ASGGNEQIQA 133
Query: 95 VAFPGERSLEVVRPLLSLL-HPEATALETFEGLMALCNLAAIGEKQRQR 142
V G + L+ LL P L+ E L AL N+A+ G +Q Q
Sbjct: 134 VIDAG-----ALPALVQLLSSPNEQILQ--EALWALSNIASGGNEQIQA 175
Score = 25.7 bits (57), Expect = 6.8
Identities = 31/120 (25%), Positives = 52/120 (43%), Gaps = 16/120 (13%)
Query: 30 VESDNTRELL--ARILNALASQ-QELRGLMVQQGASKALIHLAHNGTVKGKRQAAQGLAR 86
+ SD+ +E L R + + S E ++ GA AL+ L + + ++A L+
Sbjct: 21 LNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSN 80
Query: 87 LGITLNPE----VAFPGERSLEVVRPLLSLL-HPEATALETFEGLMALCNLAAIGEKQRQ 141
+ + E V G + L+ LL P L+ E L AL N+A+ G +Q Q
Sbjct: 81 I-ASGGNEQIQAVIDAG-----ALPALVQLLSSPNEQILQ--EALWALSNIASGGNEQIQ 132
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif,
de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A
4dba_A
Length = 210
Score = 36.8 bits (86), Expect = 0.001
Identities = 17/94 (18%), Positives = 31/94 (32%), Gaps = 5/94 (5%)
Query: 42 ILNALASQQELRGLMVQQGASKALIHLAHNGTVKGKRQAAQGLARLGITLNPEVAFPGER 101
+ N + E ++ GA AL+ L + + ++A L+ I +
Sbjct: 120 LSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSN--IASGGNEQKQAVK 177
Query: 102 SLEVVRPLLSLL-HPEATALETFEGLMALCNLAA 134
+ L L H + E AL L +
Sbjct: 178 EAGALEKLEQLQSHENEKIQK--EAQEALEKLQS 209
Score = 32.6 bits (75), Expect = 0.033
Identities = 26/105 (24%), Positives = 45/105 (42%), Gaps = 13/105 (12%)
Query: 42 ILNALASQQELRGLMVQQGASKALIHLAHNGTVKGKRQAAQGLARLGITLNPE----VAF 97
+ N + E ++ GA AL+ L + + ++A L+ + + E V
Sbjct: 78 LSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNI-ASGGNEQIQAVID 136
Query: 98 PGERSLEVVRPLLSLL-HPEATALETFEGLMALCNLAAIGEKQRQ 141
G + L+ LL P L+ E L AL N+A+ G +Q+Q
Sbjct: 137 AG-----ALPALVQLLSSPNEQILQ--EALWALSNIASGGNEQKQ 174
Score = 31.1 bits (71), Expect = 0.12
Identities = 17/83 (20%), Positives = 36/83 (43%), Gaps = 5/83 (6%)
Query: 60 GASKALIHLAHNGTVKGKRQAAQGLARLGITLNPEVAFPGERSLEVVRPLLSLL-HPEAT 118
++ ++ + + A + L+++ N ++ + + L+ LL P
Sbjct: 12 SELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVID--AGALPALVQLLSSPNEQ 69
Query: 119 ALETFEGLMALCNLAAIGEKQRQ 141
L+ E L AL N+A+ G +Q Q
Sbjct: 70 ILQ--EALWALSNIASGGNEQIQ 90
Score = 28.4 bits (64), Expect = 1.0
Identities = 12/52 (23%), Positives = 25/52 (48%)
Query: 36 RELLARILNALASQQELRGLMVQQGASKALIHLAHNGTVKGKRQAAQGLARL 87
+E L + N + E + + + GA + L L + K +++A + L +L
Sbjct: 156 QEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKL 207
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell
cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A
3au3_A 3qhe_A
Length = 354
Score = 36.4 bits (84), Expect = 0.003
Identities = 18/109 (16%), Positives = 43/109 (39%), Gaps = 3/109 (2%)
Query: 33 DNTRELLARILNALASQQELRGLMVQQGASKALIHLAHNGTVKGKRQAAQGLARLGITLN 92
++ +L + + +A+ ++ R ++ + + L+ + ++ A L L N
Sbjct: 236 ESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNL-SARN 294
Query: 93 PEVAFPGERSLEVVRPLLSLLHPEATALETFEGLMALCNLAAIGEKQRQ 141
P+ + V L +L+H + + AL NL A + +
Sbjct: 295 PKDQEALWD-MGAVSMLKNLIHSKHKMIAM-GSAAALRNLMANRPAKYK 341
Score = 29.8 bits (67), Expect = 0.33
Identities = 16/88 (18%), Positives = 31/88 (35%), Gaps = 1/88 (1%)
Query: 55 LMVQQGASKALIHLAHNGTVKGKRQAAQGLARLGITLNPEVAFPGERSLEVVRPLLSLLH 114
L +G +AL+ + + ++ A L L + + R + V+ L+
Sbjct: 122 LCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVN-SKKTLREVGSVKALMECAL 180
Query: 115 PEATALETFEGLMALCNLAAIGEKQRQR 142
L AL NL+A + +
Sbjct: 181 EVKKESTLKSVLSALWNLSAHCTENKAD 208
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats,
cell adhesion-CE complex; 3.01A {Homo sapiens}
Length = 458
Score = 35.7 bits (82), Expect = 0.004
Identities = 18/97 (18%), Positives = 39/97 (40%), Gaps = 3/97 (3%)
Query: 38 LLARILNALASQQELRGLMVQQGASKALIHLAHNGTVKGKRQAAQGLARLGITLNPEVAF 97
+L + + +A+ ++ R ++ + + L+ + ++ A L L NP+
Sbjct: 357 ILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNL-SARNPKDQ- 414
Query: 98 PGERSLEVVRPLLSLLHPEATALETFEGLMALCNLAA 134
+ V L +L+H + + AL NL A
Sbjct: 415 EALWDMGAVSMLKNLIHSKHKMIAM-GSAAALRNLMA 450
Score = 29.2 bits (65), Expect = 0.65
Identities = 19/114 (16%), Positives = 34/114 (29%), Gaps = 3/114 (2%)
Query: 31 ESDNTRELLARILNALASQQELRGLMV--QQGASKALIHLAHNGTVKGKRQAAQGLARLG 88
S R L L + +G +AL+ + + ++ A L L
Sbjct: 212 YSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLS 271
Query: 89 ITLNPEVAFPGERSLEVVRPLLSLLHPEATALETFEGLMALCNLAAIGEKQRQR 142
+ R + V+ L+ L AL NL+A + +
Sbjct: 272 WRADVNSKKTL-REVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKAD 324
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear
transport, exportin, RAN GTPase, protein transport; HET:
GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1
PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Length = 530
Score = 35.4 bits (81), Expect = 0.005
Identities = 25/150 (16%), Positives = 51/150 (34%), Gaps = 13/150 (8%)
Query: 2 LRRAATQTMTNMIVSEDVIKIYEANKDKVE---------SDNTRELLARILNALASQ-QE 51
L+ A +TN+ + D V S +E L +A +
Sbjct: 147 LQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTD 206
Query: 52 LRGLMVQQGASKALIHLAHNGTVKGKRQAAQGLARLGITLNPEVAFPGERSLEVVRPLLS 111
R ++Q A + ++ L ++ R A L+ L P+ + + + L
Sbjct: 207 YRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVS--QALPTLAK 264
Query: 112 LLHPEATALETFEGLMALCNLAAIGEKQRQ 141
L++ T + A+ L+ ++ Q
Sbjct: 265 LIYSMDTETLV-DACWAISYLSDGPQEAIQ 293
Score = 27.7 bits (61), Expect = 2.2
Identities = 11/96 (11%), Positives = 30/96 (31%), Gaps = 1/96 (1%)
Query: 47 ASQQELRGLMVQQGASKALIHLAHNGTVKGKRQAAQGLARLGITLNPEVAFPGERSLEVV 106
+ + + Q + ++ ++ + A ++ ++ VV
Sbjct: 74 SVSADQQFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQI-LSREHRPPIDVVIQAGVV 132
Query: 107 RPLLSLLHPEATALETFEGLMALCNLAAIGEKQRQR 142
L+ + + E AL N+A+ Q +
Sbjct: 133 PRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKV 168
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.8 bits (82), Expect = 0.005
Identities = 32/179 (17%), Positives = 53/179 (29%), Gaps = 69/179 (38%)
Query: 5 AATQTMTNMIVSEDVIKIYEANKDKVESDN----TRELLARILNALASQQE--------- 51
A+Q + E KI + +D+ EL+ + L ++S E
Sbjct: 29 IASQ------LQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQ 82
Query: 52 -LRGLMVQQGASKAL----IH------LAHNGTVKGKRQ--------------------- 79
L L + + + L IH L N T K +
Sbjct: 83 VLN-LCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKS 141
Query: 80 -------AAQGLARLGITL-----NPEVAFPGE-RSL-EVVRPLLS-LLHPEATALETF 123
+G A+L + + N + F E R L + L+ L+ A L
Sbjct: 142 NSALFRAVGEGNAQL-VAIFGGQGNTDDYFE-ELRDLYQTYHVLVGDLIKFSAETLSEL 198
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 34.4 bits (78), Expect = 0.015
Identities = 29/174 (16%), Positives = 59/174 (33%), Gaps = 32/174 (18%)
Query: 9 TMTNMIVSEDVIKI-----YEANKDKVE-SDNTRELLARILNALASQQELRGLMVQQGAS 62
+ N E V+++ Y+ + + SD++ + RI + Q ELR L+ +
Sbjct: 188 NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSI---QAELRRLLKSKPYE 244
Query: 63 KALIHLAHNGTVKGKR--QAAQGLAR-LGITLNPEVAF----PGERSLEVVRPLLSLLHP 115
L+ L + V+ + A + L T +V + + ++L
Sbjct: 245 NCLLVLLN---VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD 301
Query: 116 EATALETFEGLMALCNLAAIGEKQRQRKKLNFRPFVSCLGGVVVK----TLD-W 164
E + L+ + R+ N P + ++ T D W
Sbjct: 302 EV------KSLLLKYLDCRPQDLPREVLTTN--PRRLSIIAESIRDGLATWDNW 347
Score = 30.6 bits (68), Expect = 0.28
Identities = 24/165 (14%), Positives = 50/165 (30%), Gaps = 36/165 (21%)
Query: 8 QTMTNMIVSEDVIKIY-EANKDKVESDNTRELLARILNALASQQELR------------- 53
+ +T+ + + I + + + D + LL + L+ Q+L
Sbjct: 275 KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD--CRPQDLPREVLTTNPRRLSI 332
Query: 54 -GLMVQQGASKALIHLAHNGTVKGKRQAAQGLARLGITLNPE---------VAFPGERSL 103
++ G + + H K L L P FP S
Sbjct: 333 IAESIRDGLAT-WDNWKHVNCDKLTTIIESSLN----VLEPAEYRKMFDRLSVFP--PSA 385
Query: 104 EVVRPLLSLLHPEATALETFEGLMALCNLAAIGEKQRQRKKLNFR 148
+ LLSL+ + + + L + + ++Q K+
Sbjct: 386 HIPTILLSLIWFDVIKSDVMVVVNKLHKYSLV---EKQPKESTIS 427
>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha,
nuclear localisation SIGN recognition, chloride
intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus}
PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I
1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A
1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ...
Length = 510
Score = 33.5 bits (76), Expect = 0.025
Identities = 15/107 (14%), Positives = 37/107 (34%), Gaps = 1/107 (0%)
Query: 36 RELLARILNALASQQELRGLMVQQGASKALIHLAHNGTVKGKRQAAQGLARLGITLNPEV 95
L + A + + ++ ++ ++ + QA Q +L ++ +
Sbjct: 33 SPDLGTDDDDKAMADIGSNQGTVNWSVEDIVKGINSNNLESQLQATQAARKL-LSREKQP 91
Query: 96 AFPGERSLEVVRPLLSLLHPEATALETFEGLMALCNLAAIGEKQRQR 142
++ +S L + FE AL N+A+ +Q +
Sbjct: 92 PIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKA 138
Score = 31.9 bits (72), Expect = 0.091
Identities = 27/151 (17%), Positives = 57/151 (37%), Gaps = 15/151 (9%)
Query: 2 LRRAATQTMTNMIVSEDVIKIYEANKD------KVESDNTRELLARILNALA----SQQE 51
R T T++N+ +++ +A + ++ N E+LA A++ E
Sbjct: 206 YLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNE 265
Query: 52 LRGLMVQQGASKALIHLAHNGTVKGKRQAAQGLARLGITLNPEVAFPGERSLEVVRPLLS 111
++V++G L+ L + A + + + +T E + S
Sbjct: 266 RIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI-VTGTDEQTQK-VIDAGALAVFPS 323
Query: 112 LL-HPEATALETFEGLMALCNLAAIGEKQRQ 141
LL +P+ + E + N+ A + Q Q
Sbjct: 324 LLTNPKTNIQK--EATWTMSNITAGRQDQIQ 352
>3ahy_A Beta-glucosidase; cellulases, glycosyl hydrolase, manganese
enhancement, hydro; 1.63A {Trichoderma reesei}
Length = 473
Score = 31.8 bits (73), Expect = 0.084
Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
Query: 68 LAHNGTV---KGKRQAAQGLARLGITLNPEVAFP 98
+AH V + + A G ++GI LN + +P
Sbjct: 205 VAHGRAVKAYRDDFKPASGDGQIGIVLNGDFTYP 238
>1qox_A Beta-glucosidase; hydrolase, cellulose degradation; 2.7A {Bacillus
circulans} SCOP: c.1.8.4
Length = 449
Score = 31.7 bits (73), Expect = 0.089
Identities = 9/31 (29%), Positives = 12/31 (38%), Gaps = 1/31 (3%)
Query: 68 LAHNGTVKGKRQAAQGLARLGITLNPEVAFP 98
+AH V R+ +GI N A P
Sbjct: 198 VAHGRAVTLFRELGIS-GEIGIAPNTSWAVP 227
>3ahx_A Beta-glucosidase A; cellulases, glycosyl hydrolase, manganese
enhancement, hydro; HET: 7PE; 1.90A {Clostridium
cellulovorans}
Length = 453
Score = 31.7 bits (73), Expect = 0.099
Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 68 LAHNGTVKGKRQAAQGLARLGITLNPEVAFP 98
L+H VK R+ Q ++GITLN +
Sbjct: 199 LSHFKAVKAYRELEQD-GQIGITLNLSTCYS 228
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion,
complex, cell-CELL adhesion, ARVCF, delta-catenin DP120,
JAC-1, cell membrane, membrane; 2.40A {Homo sapiens}
PDB: 3l6y_A
Length = 584
Score = 31.5 bits (70), Expect = 0.10
Identities = 16/112 (14%), Positives = 37/112 (33%), Gaps = 2/112 (1%)
Query: 31 ESDNTRELLARILNALASQ-QELRGLMVQQGASKALIHLAHNGTVKGKRQAAQGLARLGI 89
D + A L L + +++ + + L+ L + + A L +
Sbjct: 60 RLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISF 119
Query: 90 TLNPEVAFPGERSLEVVRPLLSLLHPEATALETFEGLMALCNLAAIGEKQRQ 141
+ + ++ + V L+ LL T L NL++ + +
Sbjct: 120 GRDQDNK-IAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKME 170
>1gnx_A Beta-glucosidase; hydrolase, glycosyltransferase, family 1 of
glycosyl hydrolase; HET: SUC; 1.68A {Streptomyces SP}
SCOP: c.1.8.4 PDB: 1gon_A
Length = 479
Score = 31.0 bits (71), Expect = 0.15
Identities = 9/31 (29%), Positives = 12/31 (38%)
Query: 68 LAHNGTVKGKRQAAQGLARLGITLNPEVAFP 98
L H V+ R A+ +TLN P
Sbjct: 211 LGHGLAVQALRDRLPADAQCSVTLNIHHVRP 241
>3ta9_A Glycoside hydrolase family 1; TIM barrel, glucosidase; 3.00A
{Halothermothrix orenii}
Length = 458
Score = 30.9 bits (71), Expect = 0.15
Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 68 LAHNGTVKGKRQAAQGLARLGITLNPEVAFP 98
L+H V R+ +GITLN A+P
Sbjct: 206 LSHGMAVDIFREEDLP-GEIGITLNLTPAYP 235
>1e4i_A Beta-glucosidase; hydrolase, family 1 glycosyl hydrolase, covalent
enzyme-GLYC intermediate, alpha/beta barrel; HET: G2F
NFG; 2.00A {Bacillus polymyxa} SCOP: c.1.8.4 PDB: 1tr1_A
1bgg_A* 1bga_A 1uyq_A*
Length = 447
Score = 30.9 bits (71), Expect = 0.15
Identities = 9/31 (29%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 68 LAHNGTVKGKRQAAQGLARLGITLNPEVAFP 98
+AH +V+ R+ ++GI N A P
Sbjct: 198 VAHGLSVRRFRELGTS-GQIGIAPNVSWAVP 227
>2j78_A Beta-glucosidase A; family 1, hydrolase, inhibitor, glycosidase,
polysaccharide degradation, transition state mimic,
carbohydrate metabolism; HET: GOX; 1.65A {Thermotoga
maritima} SCOP: c.1.8.4 PDB: 1oif_A* 1oim_A* 1oin_A*
1od0_A* 1w3j_A* 1uz1_A* 2cbv_A* 2ces_A* 2cet_A* 2j75_A*
2j77_A* 2cbu_A* 2j79_A* 2j7b_A* 2j7c_A* 2j7d_A* 2j7e_A*
2j7f_A* 2j7g_A* 2j7h_A* ...
Length = 468
Score = 31.0 bits (71), Expect = 0.17
Identities = 10/37 (27%), Positives = 14/37 (37%), Gaps = 1/37 (2%)
Query: 68 LAHNGTVKGKRQAAQGLARLGITLNPEVAFPGERSLE 104
AH VK R+ + ++GI N P E
Sbjct: 221 RAHARAVKVFRETVKD-GKIGIVFNNGYFEPASEKEE 256
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone;
2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Length = 296
Score = 30.8 bits (69), Expect = 0.18
Identities = 21/121 (17%), Positives = 33/121 (27%), Gaps = 1/121 (0%)
Query: 13 MIVSEDVIKIYEANKDKVESDNTRELLARILNALASQQELRGLMVQQGASKALIHLAHNG 72
+ V + ++ RE +L L + Q L+
Sbjct: 34 LRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEA 93
Query: 73 TVKGKRQAAQGLARLGITLNPEVAFPGERSLEVVRPLLSLLHPEATALETFEGLMALCNL 132
G R A L + L +R LL LL +A + L A+ L
Sbjct: 94 GAAGLRWRAAQLIGTCSQNVAAIQEQV-LGLGALRKLLRLLDRDACDTVRVKALFAISCL 152
Query: 133 A 133
Sbjct: 153 V 153
Score = 29.6 bits (66), Expect = 0.46
Identities = 19/106 (17%), Positives = 28/106 (26%), Gaps = 4/106 (3%)
Query: 31 ESDNTRELLARILNALASQQ-ELRGLMVQQGASKALIHLAHNGTVKGKRQAAQGLARL-- 87
+ + A +L L E +G + G + L+ L L L
Sbjct: 179 QVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVT 238
Query: 88 -GITLNPEVAFPGERSLEVVRPLLSLLHPEATALETFEGLMALCNL 132
E P E++R LL E E L
Sbjct: 239 DFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQT 284
>1qvb_A Beta-glycosidase; TIM-barrel, thermostable, hydrolase; 2.40A
{Thermosphaera aggregans} SCOP: c.1.8.4
Length = 481
Score = 30.3 bits (69), Expect = 0.23
Identities = 9/51 (17%), Positives = 18/51 (35%), Gaps = 4/51 (7%)
Query: 59 QGASKALIH--LAHNGTVKGKRQAAQGLARLGITLNPEVAFPGERSLEVVR 107
+ A KA + AH ++ ++ +G+ + E EV
Sbjct: 232 EAADKARRNMIQAHARAYDNIKRFSKK--PVGLIYAFQWFELLEGPAEVFD 280
>2o9p_A Beta-glucosidase B; family 1 glycoside hydrolase; 2.10A
{Paenibacillus polymyxa} PDB: 2o9t_A* 2z1s_A* 2jie_A*
2o9r_A*
Length = 454
Score = 30.2 bits (69), Expect = 0.30
Identities = 7/31 (22%), Positives = 12/31 (38%), Gaps = 1/31 (3%)
Query: 68 LAHNGTVKGKRQAAQGLARLGITLNPEVAFP 98
+ H ++ ++GITLN E
Sbjct: 206 MCHGIASNLHKEKGLT-GKIGITLNMEHVDA 235
>3fj0_A Beta-glucosidase; BGLB,BGL, hydrolase, glycosidase; HET: BGC; 1.15A
{Uncultured bacterium} PDB: 3cmj_A 3fiz_A* 3fiy_A*
Length = 465
Score = 29.8 bits (68), Expect = 0.37
Identities = 9/31 (29%), Positives = 17/31 (54%)
Query: 68 LAHNGTVKGKRQAAQGLARLGITLNPEVAFP 98
L+H ++ R + +++GITLN +P
Sbjct: 219 LSHGQALQAFRALSPAGSQMGITLNFNTIYP 249
>3u3i_A Nucleocapsid protein; endonuclease, RNA binding, CCHFV, RNA
protein; 2.30A {Crimean-congo hemorrhagic fever virus}
Length = 482
Score = 29.8 bits (66), Expect = 0.37
Identities = 12/49 (24%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
Query: 17 EDVIKIYEANKDKVESDNTRELLARILNALASQQELRGL---MVQQGAS 62
E + +KD+V+ + ++ +L +A QEL + QGA
Sbjct: 255 EALNGYLNKHKDEVDKASADSMITNLLKHIAKAQELYKNSSALRAQGAQ 303
>2e3z_A Beta-glucosidase; TIM barrel, glycoside hydrolase family 1, CLAN
GH-A, structural genomics, NPPSFA; 1.50A {Phanerochaete
chrysosporium} PDB: 2e40_A*
Length = 465
Score = 29.0 bits (66), Expect = 0.63
Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 4/40 (10%)
Query: 68 LAHNGTV---KGKRQAAQGLARLGITLNPEVAFPGERSLE 104
LAH V + + + QG ++GITL+ P + +
Sbjct: 206 LAHAHAVKLYRDEFKEKQG-GQIGITLDSHWLIPYDDTDA 244
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 29.5 bits (66), Expect = 0.63
Identities = 22/98 (22%), Positives = 32/98 (32%), Gaps = 38/98 (38%)
Query: 54 GLMVQQGASKALIHLAHNGTVKGKRQAAQGLARLGIT--LNPEVAFPGERSLEVVRPLLS 111
GLM + N + A+G+ ++G+ E+AF LL
Sbjct: 677 GLM------------SANNII------AEGIEKMGVRTFSQKEMAFN----------LLG 708
Query: 112 LLHPEATALETFE--------GLMALCNLAAIGEKQRQ 141
LL PE L GL + L K R+
Sbjct: 709 LLTPEVVELCQKSPVMADLNGGLQFVPELKEFTAKLRK 746
>3vii_A Beta-glucosidase; cellulases, glycosyl hydrolase, hydrolase; HET:
BTB; 0.97A {Neotermes koshunensis} PDB: 3ahz_A* 3vif_A*
3vih_A 3vig_A* 3vim_A* 3ai0_A* 3vin_A* 3vio_A* 3vip_A*
3vij_A* 3vik_A* 3vil_A*
Length = 487
Score = 29.1 bits (66), Expect = 0.73
Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 4/34 (11%)
Query: 68 LAHNGTV---KGKRQAAQGLARLGITLNPEVAFP 98
AH + +A QG ++GI+LN P
Sbjct: 208 HAHARIYHLYDQEFRAEQG-GKVGISLNINWCEP 240
>4a3y_A Raucaffricine-O-beta-D-glucosidase; hydrolase, alkaloid; 2.15A
{Rauvolfia serpentina} PDB: 3u5u_A 3u57_A 3u5y_A*
Length = 540
Score = 28.8 bits (65), Expect = 0.91
Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 4/34 (11%)
Query: 68 LAHNGTV---KGKRQAAQGLARLGITLNPEVAFP 98
LAH V K K Q Q ++GI+ + P
Sbjct: 248 LAHAAAVELYKNKFQRGQE-GQIGISHATQWMEP 280
>1pbg_A PGAL, 6-phospho-beta-D-galactosidase; hydrolase (glycosyl
hydrolase); 2.30A {Lactococcus lactis} SCOP: c.1.8.4
PDB: 3pbg_A 2pbg_A 4pbg_A*
Length = 468
Score = 28.7 bits (65), Expect = 0.91
Identities = 5/31 (16%), Positives = 11/31 (35%), Gaps = 1/31 (3%)
Query: 68 LAHNGTVKGKRQAAQGLARLGITLNPEVAFP 98
++H VK + +G+ +P
Sbjct: 194 VSHARAVKLYKDKGYK-GEIGVVHALPTKYP 223
>3f5l_A Beta-glucosidase; beta-alpha-barrels, glycosidase, hydrolase; HET:
LB2 MES; 1.37A {Oryza sativa japonica group} PDB:
3aht_A* 3ahv_A* 3f5i_A* 3f5j_A* 3f5k_A* 3f4v_A* 2rgm_A*
2rgl_A* 3scu_A* 3scn_A* 3sco_A* 3sct_A* 3scv_A* 3scw_A*
Length = 481
Score = 28.6 bits (65), Expect = 0.96
Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 4/40 (10%)
Query: 68 LAHNGTV---KGKRQAAQGLARLGITLNPEVAFPGERSLE 104
L+H V + K QAAQ ++GI L+ S E
Sbjct: 222 LSHAAAVARYRTKYQAAQQ-GKVGIVLDFNWYEALSNSTE 260
>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3
component; oxidoreductase, homodimer, structural
genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus}
PDB: 2eq8_A* 2eq9_A*
Length = 464
Score = 28.6 bits (65), Expect = 1.0
Identities = 11/50 (22%), Positives = 18/50 (36%), Gaps = 8/50 (16%)
Query: 62 SKALIHLAHNGTVKGKRQAAQGLARLGITLNPEVAFPG--ERSLEVVRPL 109
+KAL+H A + G+ PE+ +VV+ L
Sbjct: 52 TKALLHAAE------TLHHLKVAEGFGLKAKPELDLKKLGGWRDQVVKKL 95
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural
genomics consortium, SGC, WD repeat, acetylation,
ATP-binding; 1.90A {Homo sapiens}
Length = 304
Score = 28.5 bits (63), Expect = 1.1
Identities = 30/149 (20%), Positives = 46/149 (30%), Gaps = 10/149 (6%)
Query: 1 MLRRAATQTMTNMIVSEDVIKIYEANKDKVESDNTRELLARILNALASQQELRGLMVQQG 60
+ + + N + + L R Q + LM+ Q
Sbjct: 130 IKHPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQAGQKLMMSQR 189
Query: 61 AS-KALIHLAHNGTVKGKRQAAQGLARLGITLNPEVAFPGERSLEVVRPLLSLLH---PE 116
S + +G+ K A LA LN V F + ++E LSL+
Sbjct: 190 ESLMSHAIELKSGSNKNIHIALATLA-----LNYSVCFHKDHNIEGKAQCLSLISTILEV 244
Query: 117 ATALET-FEGLMALCNLAAIGEKQRQRKK 144
LE F L+AL L + Q K
Sbjct: 245 VQDLEATFRLLVALGTLISDDSNAVQLAK 273
>2dga_A Beta-glucosidase; alpha/beta barrel, hydrolase; 1.80A {Triticum
aestivum} PDB: 3aiq_A* 3air_A* 3ais_A* 3aiu_A 3aiv_A*
3aiw_A*
Length = 565
Score = 28.4 bits (64), Expect = 1.2
Identities = 7/34 (20%), Positives = 13/34 (38%), Gaps = 4/34 (11%)
Query: 68 LAHNGTV---KGKRQAAQGLARLGITLNPEVAFP 98
LAH V K + +++G+ + P
Sbjct: 281 LAHAEAVQLFKARYNMHGD-SKIGMAFDVMGYEP 313
>1v02_A Dhurrinase, dhurrinase-1; beta-glucosidase, dhurrin hydrolysis,
PEST defense, family GH1, hydrolase; 1.9A {Sorghum
bicolor} SCOP: c.1.8.4 PDB: 1v02_E 1v03_A*
Length = 565
Score = 28.4 bits (64), Expect = 1.3
Identities = 10/33 (30%), Positives = 12/33 (36%), Gaps = 3/33 (9%)
Query: 68 LAHNGTVKG--KRQAAQGLARLGITLNPEVAFP 98
AH TV K R+G+ LN P
Sbjct: 285 RAHAETVDIYNKYHKGAD-GRIGLALNVFGRVP 316
>3ptm_A Beta-glucosidase OS4BGlu12; beta-alpha barrel, glycosidase,
hydrolase; HET: G2F; 2.40A {Oryza sativa} PDB: 3ptk_A*
3ptq_A*
Length = 505
Score = 28.3 bits (64), Expect = 1.3
Identities = 15/34 (44%), Positives = 17/34 (50%), Gaps = 4/34 (11%)
Query: 68 LAHNGTV---KGKRQAAQGLARLGITLNPEVAFP 98
LAH TV K K QA Q ++GITL P
Sbjct: 243 LAHAETVRLYKAKYQALQK-GKIGITLVSHWFVP 275
>3apg_A Beta-glucosidase; TIM barrel, hydrolase, sugar binding, hydrolysis;
2.35A {Pyrococcus furiosus}
Length = 473
Score = 28.0 bits (63), Expect = 1.4
Identities = 8/40 (20%), Positives = 15/40 (37%), Gaps = 4/40 (10%)
Query: 61 ASKALIH--LAHNGTVKGKRQAAQGLARLGITLNPEVAFP 98
A KA + AH G ++ ++ +G+ P
Sbjct: 234 AEKAKFNLIQAHIGAYDAIKEYSEK--SVGVIYAFAWHDP 271
>3gnp_A OS03G0212800 protein; beta-alpha barrel, glycosidase, hydrolase;
HET: SOG; 1.80A {Oryza sativa subsp} PDB: 3gno_A*
3gnr_A*
Length = 488
Score = 28.3 bits (64), Expect = 1.4
Identities = 10/34 (29%), Positives = 14/34 (41%), Gaps = 4/34 (11%)
Query: 68 LAHNGTV---KGKRQAAQGLARLGITLNPEVAFP 98
LAH + K +A Q +LGI + P
Sbjct: 223 LAHAAAASIYRTKYKATQN-GQLGIAFDVMWFEP 255
>2jf7_A Strictosidine-O-beta-D-glucosidase; alkaloid, hydrolase; 2.48A
{Rauvolfia serpentina} PDB: 2jf6_A
Length = 532
Score = 27.9 bits (63), Expect = 1.5
Identities = 12/34 (35%), Positives = 14/34 (41%), Gaps = 4/34 (11%)
Query: 68 LAHNGTV---KGKRQAAQGLARLGITLNPEVAFP 98
LAH V + K Q Q +GI LN P
Sbjct: 247 LAHKAAVEEYRNKFQKCQE-GEIGIVLNSMWMEP 279
>1wcg_A Thioglucosidase, myrosinase; aphid, beta-glucosidase, insect,
beta-barrel, hydrolase, glycosidase; 1.10A {Brevicoryne
brassicae} SCOP: c.1.8.4
Length = 464
Score = 27.9 bits (63), Expect = 1.6
Identities = 5/34 (14%), Positives = 13/34 (38%), Gaps = 4/34 (11%)
Query: 68 LAHNGTV---KGKRQAAQGLARLGITLNPEVAFP 98
+AH + + Q ++ I+++ P
Sbjct: 200 IAHGKAYRLYEEMFKPTQN-GKISISISGVFFMP 232
>1cbg_A Cyanogenic beta-glucosidase; hydrolase (O-glycosyl); 2.15A
{Trifolium repens} SCOP: c.1.8.4
Length = 490
Score = 27.9 bits (63), Expect = 1.6
Identities = 13/34 (38%), Positives = 15/34 (44%), Gaps = 4/34 (11%)
Query: 68 LAHNGTV---KGKRQAAQGLARLGITLNPEVAFP 98
LAH K K QA+Q +GITL P
Sbjct: 228 LAHAAAARLYKTKYQASQN-GIIGITLVSHWFEP 260
>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide
dehydrogenase, pyruvate dehydrogenase, alpha keto acid
dehydrogenase; HET: FAD; 2.40A {Mycobacterium
tuberculosis} PDB: 3ii4_A*
Length = 464
Score = 27.5 bits (62), Expect = 2.3
Identities = 10/50 (20%), Positives = 16/50 (32%), Gaps = 7/50 (14%)
Query: 62 SKALIHLAHNGTVKGKRQAAQGLARLGITLNPEVAFPG--ERSLEVVRPL 109
SKAL+ A + GI+ + +RS +V
Sbjct: 49 SKALLRNAEL-----VHIFTKDAKAFGISGEVTFDYGIAYDRSRKVAEGR 93
>4eam_A Lactase, beta-galactosidase; glycoside hydrolase, chemical biology,
allosteric activation switchable enzyme, chemical
rescue; 1.70A {Sulfolobus solfataricus P2} PDB: 4ean_A
1uws_A* 1uwr_A* 1uwq_A* 1uwt_A* 1uwu_A* 2ceq_A* 2cer_A*
1gow_A 1uwi_A
Length = 489
Score = 27.3 bits (61), Expect = 2.4
Identities = 7/40 (17%), Positives = 15/40 (37%), Gaps = 4/40 (10%)
Query: 61 ASKALIH--LAHNGTVKGKRQAAQGLARLGITLNPEVAFP 98
+ +A+ + AH G + ++ +GI P
Sbjct: 232 SRRAMYNIIQAHARAYDGIKSVSKK--PVGIIYANSSFQP 269
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo
sapiens} SCOP: a.118.1.24
Length = 457
Score = 27.5 bits (60), Expect = 2.6
Identities = 20/112 (17%), Positives = 41/112 (36%), Gaps = 3/112 (2%)
Query: 31 ESDNTRELLARILNALASQ-QELRGLMVQQGASKALIHLAHNGTVKGKRQAAQGLARLGI 89
+ + + + A + Q + + + Q G L+ L + ++ AA L L +
Sbjct: 14 QDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNL-V 72
Query: 90 TLNPEVAFPGERSLEVVRPLLSLLHPEATALETFEGLMALCNLAAIGEKQRQ 141
+ R +R +SLL A + L NL++ E + +
Sbjct: 73 FRSTTNKLETRRQ-NGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEE 123
>1ug6_A Beta-glycosidase; glucosidase, atomic resolution, riken structural
genomics/PR initiative, RSGI, structural genomics,
hydrolase; 0.99A {Thermus thermophilus} SCOP: c.1.8.4
PDB: 1np2_A
Length = 431
Score = 27.1 bits (61), Expect = 2.8
Identities = 11/31 (35%), Positives = 14/31 (45%), Gaps = 2/31 (6%)
Query: 68 LAHNGTVKGKRQAAQGLARLGITLNPEVAFP 98
L H V+ R A R+GI LN A+
Sbjct: 197 LGHGLAVEALRAAGAR--RVGIVLNFAPAYG 225
>1vff_A Beta-glucosidase; glycosyl hydrolase, membrane-bound enzyme,
thermostability, TIM barrel, alkylglucosides; 2.50A
{Pyrococcus horikoshii} SCOP: c.1.8.4
Length = 423
Score = 27.1 bits (61), Expect = 2.9
Identities = 6/37 (16%), Positives = 10/37 (27%), Gaps = 4/37 (10%)
Query: 68 LAHNGTVKGKRQAAQGLARLGITLNPEVAFPGERSLE 104
AH + + +GI N + P
Sbjct: 188 KAHAIAYELLHGKFK----VGIVKNIPIILPASDKER 220
>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex,
pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A
{Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5
d.87.1.1 PDB: 1jeh_A*
Length = 478
Score = 26.3 bits (59), Expect = 4.9
Identities = 9/36 (25%), Positives = 16/36 (44%), Gaps = 5/36 (13%)
Query: 62 SKALIHLAHNGTVKGKRQAAQGLARLGITLNPEVAF 97
SKAL++ +H Q + GI +N ++
Sbjct: 52 SKALLNNSHL-----FHQMHTEAQKRGIDVNGDIKI 82
>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle
structural genomics CEN infectious disease,
oxidoreductase; 2.30A {Mycobacterium smegmatis}
Length = 266
Score = 25.6 bits (57), Expect = 7.4
Identities = 14/55 (25%), Positives = 19/55 (34%), Gaps = 12/55 (21%)
Query: 41 RILNALASQQELRGLMVQQ--GASKA-LIHLAHNGTVKGKRQAAQGLARLGITLN 92
I+ +AS L L SKA L+ + A+ L GI N
Sbjct: 152 AIIT-VASAAALAPLPDHYAYCTSKAGLVMAT--------KVLARELGPHGIRAN 197
>1tul_A TLP20; telokin-like protein; 2.20A {Autographa californica
nucleopolyhedroorganism_taxid} SCOP: b.85.5.1
Length = 108
Score = 25.0 bits (54), Expect = 7.8
Identities = 15/57 (26%), Positives = 21/57 (36%)
Query: 108 PLLSLLHPEATALETFEGLMALCNLAAIGEKQRQRKKLNFRPFVSCLGGVVVKTLDW 164
P L LL+ A + + LCNL GE N G ++ +T W
Sbjct: 51 PQLRLLYKNAYSTVSCGNYGVLCNLVQNGEYDLNAIMFNCAEIKLNKGQMLFQTKIW 107
>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase,
NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria
meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB:
1bhy_A*
Length = 482
Score = 26.0 bits (58), Expect = 7.9
Identities = 12/38 (31%), Positives = 15/38 (39%), Gaps = 7/38 (18%)
Query: 62 SKALIHLAHNGTVKGKRQAAQGLARLGITL-NPEVAFP 98
SKAL+H A + LA GI PE+
Sbjct: 53 SKALLHNAA------VIDEVRHLAANGIKYPEPELDID 84
>2qae_A Lipoamide, dihydrolipoyl dehydrogenase;
FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A
{Trypanosoma cruzi}
Length = 468
Score = 25.9 bits (58), Expect = 8.2
Identities = 11/36 (30%), Positives = 13/36 (36%), Gaps = 5/36 (13%)
Query: 62 SKALIHLAHNGTVKGKRQAAQGLARLGITLNPEVAF 97
SKAL+H H A AR G+ V
Sbjct: 49 SKALLHATHL-----YHDAHANFARYGLMGGEGVTM 79
>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics,
protein structure initiati YORK structural genomics
research consortium; HET: FAD; 1.90A {Sinorhizobium
meliloti}
Length = 491
Score = 25.6 bits (57), Expect = 8.4
Identities = 14/51 (27%), Positives = 21/51 (41%), Gaps = 8/51 (15%)
Query: 62 SKALIHLAHNGTVKGKRQAAQGLARLGITL-NPEVAFPG--ERSLEVVRPL 109
SKAL+H + QA GL LG+ + NP++ V+
Sbjct: 72 SKALLHASEM-----FHQAQHGLEALGVEVANPKLNLQKMMAHKDATVKSN 117
>2r79_A Periplasmic binding protein; heme transport, transport prote; HET:
HEM; 2.40A {Pseudomonas aeruginosa}
Length = 283
Score = 25.4 bits (56), Expect = 9.1
Identities = 8/37 (21%), Positives = 14/37 (37%)
Query: 98 PGERSLEVVRPLLSLLHPEATALETFEGLMALCNLAA 134
G R + + L + +P A L T L + +
Sbjct: 244 LGPRLPDGLAALSAAFYPSAKPLSTEAAHPLLGDDST 280
>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex
protein, pyruvate dehydrogenase complex, glycine
decarboxylase complex; HET: FAD; 3.15A {Pisum sativum}
SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 470
Score = 25.5 bits (57), Expect = 10.0
Identities = 13/51 (25%), Positives = 21/51 (41%), Gaps = 8/51 (15%)
Query: 62 SKALIHLAHNGTVKGKRQAAQGLARLGITL-NPEVAFPG--ERSLEVVRPL 109
SKAL+H +H +A A G+ + N E+ + + V L
Sbjct: 53 SKALLHSSHM-----YHEAKHSFANHGVKVSNVEIDLAAMMGQKDKAVSNL 98
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.133 0.368
Gapped
Lambda K H
0.267 0.0814 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,393,196
Number of extensions: 139569
Number of successful extensions: 551
Number of sequences better than 10.0: 1
Number of HSP's gapped: 522
Number of HSP's successfully gapped: 104
Length of query: 164
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 78
Effective length of database: 4,300,587
Effective search space: 335445786
Effective search space used: 335445786
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.0 bits)