RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4705
         (164 letters)



>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 529

 Score = 38.7 bits (88), Expect = 2e-04
 Identities = 15/57 (26%), Positives = 25/57 (43%)

Query: 31  ESDNTRELLARILNALASQQELRGLMVQQGASKALIHLAHNGTVKGKRQAAQGLARL 87
             +N + + A +L  LA  +E    +  +GA+  L  L H+        AA  L R+
Sbjct: 472 PIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM 528



 Score = 28.7 bits (62), Expect = 0.34
 Identities = 14/85 (16%), Positives = 26/85 (30%), Gaps = 2/85 (2%)

Query: 57  VQQGASKALIHLAHNGTVKGKRQAAQGLARLGITLNPEVAFPGERSLEVVRPLLSLLHPE 116
           +   A   L  L ++       +AA  + +L        A    RS ++V  ++  +   
Sbjct: 14  LATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAI--MRSPQMVSAIVRTMQNT 71

Query: 117 ATALETFEGLMALCNLAAIGEKQRQ 141
                       L NL+   E    
Sbjct: 72  NDVETARCTAGTLHNLSHHREGLLA 96


>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 457

 Score = 30.2 bits (66), Expect = 0.11
 Identities = 20/125 (16%), Positives = 40/125 (32%), Gaps = 3/125 (2%)

Query: 31  ESDNTRELLARILNALASQ-QELRGLMVQQGASKALIHLAHNGTVKGKRQAAQGLARLGI 89
           + +  + + A  +     Q +  +  + Q G    L+ L  +     ++ AA  L  L  
Sbjct: 14  QDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNL-- 71

Query: 90  TLNPEVAFPGERSLEVVRPLLSLLHPEATALETFEGLMALCNLAAIGEKQRQRKKLNFRP 149
                      R    +R  +SLL     A    +    L NL++  E + +        
Sbjct: 72  VFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPV 131

Query: 150 FVSCL 154
               +
Sbjct: 132 LADRV 136


>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId:
           10090]}
          Length = 434

 Score = 28.6 bits (62), Expect = 0.36
 Identities = 13/83 (15%), Positives = 34/83 (40%), Gaps = 1/83 (1%)

Query: 59  QGASKALIHLAHNGTVKGKRQAAQGLARLGITLNPEVAFPGERSLEVVRPLLSLLHPEAT 118
             + + ++   ++  ++ + QA Q   +L ++   +          ++   +S L     
Sbjct: 12  NWSVEDIVKGINSNNLESQLQATQAARKL-LSREKQPPIDNIIRAGLIPKFVSFLGKTDC 70

Query: 119 ALETFEGLMALCNLAAIGEKQRQ 141
           +   FE   AL N+A+   +Q +
Sbjct: 71  SPIQFESAWALTNIASGTSEQTK 93


>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis)
           [TaxId: 7054]}
          Length = 541

 Score = 25.2 bits (54), Expect = 5.4
 Identities = 10/37 (27%), Positives = 17/37 (45%)

Query: 78  RQAAQGLARLGITLNPEVAFPGERSLEVVRPLLSLLH 114
            + A+ + R G+  N  +    E SL+   P+L  L 
Sbjct: 58  VRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALF 94


>d1tula_ b.85.5.1 (A:) Tlp20, baculovirus telokin-like protein
           {AcMNPV (Autographa californica nuclear polyhedrosis
           virus) [TaxId: 46015]}
          Length = 102

 Score = 23.9 bits (52), Expect = 5.9
 Identities = 15/57 (26%), Positives = 21/57 (36%)

Query: 108 PLLSLLHPEATALETFEGLMALCNLAAIGEKQRQRKKLNFRPFVSCLGGVVVKTLDW 164
           P L LL+  A +  +      LCNL   GE        N        G ++ +T  W
Sbjct: 45  PQLRLLYKNAYSTVSCGNYGVLCNLVQNGEYDLNAIMFNCAEIKLNKGQMLFQTKIW 101


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.133    0.368 

Gapped
Lambda     K      H
   0.267   0.0369    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 538,492
Number of extensions: 22031
Number of successful extensions: 94
Number of sequences better than 10.0: 1
Number of HSP's gapped: 94
Number of HSP's successfully gapped: 8
Length of query: 164
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 85
Effective length of database: 1,322,926
Effective search space: 112448710
Effective search space used: 112448710
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.6 bits)