BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy4706
         (163 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3NOW|A Chain A, Unc-45 From Drosophila Melanogaster
          Length = 810

 Score =  167 bits (423), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 79/120 (65%), Positives = 101/120 (84%), Gaps = 2/120 (1%)

Query: 8   RLLSG--RDAIIQLITRNVHYKAINWAERLIEIRGLQRLMEVASELQEYKYESSMEITED 65
           R +SG  RD +I+LITRNVHY A+ WAERL+EIRGL RL++V SEL++YKYES+M+IT  
Sbjct: 160 RTISGAARDGVIELITRNVHYTALEWAERLVEIRGLCRLLDVCSELEDYKYESAMDITGS 219

Query: 66  THTLASLCLARIFENMYYDQARERYLESIMEFIKDKLLSPDIESKVRVTVAITCLLLASL 125
           + T+AS+CLARI+ENMYYD+A+ R+ + I E+IKDKLL+PD+ESKVRVTVAIT LL   L
Sbjct: 220 SSTIASVCLARIYENMYYDEAKARFTDQIDEYIKDKLLAPDMESKVRVTVAITALLNGPL 279


>pdb|3PR3|A Chain A, Crystal Structure Of Plasmodium Falciparum
           Glucose-6-Phosphate Isomerase (Pf14_0341) In Complex
           With Fructose-6-Phosphate
 pdb|3PR3|B Chain B, Crystal Structure Of Plasmodium Falciparum
           Glucose-6-Phosphate Isomerase (Pf14_0341) In Complex
           With Fructose-6-Phosphate
 pdb|3QKI|A Chain A, Crystal Structure Of Glucose-6-Phosphate Isomerase
           (Pf14_0341) From Plasmodium Falciparum 3d7
 pdb|3QKI|B Chain B, Crystal Structure Of Glucose-6-Phosphate Isomerase
           (Pf14_0341) From Plasmodium Falciparum 3d7
 pdb|3QKI|C Chain C, Crystal Structure Of Glucose-6-Phosphate Isomerase
           (Pf14_0341) From Plasmodium Falciparum 3d7
          Length = 597

 Score = 30.0 bits (66), Expect = 0.65,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 44/92 (47%), Gaps = 7/92 (7%)

Query: 23  NVHYKAINWAERLIEIRGLQRLMEVASELQEYKYESSMEITEDTHTLASLCLARIFENMY 82
           N++++ +N     +EI  L+   E+ +   E K +   +   D +   SL   + F+N Y
Sbjct: 13  NLYFQGMN-----MEITNLKSYKELVTLSAEEKTKDLKDYLNDKNRSESLI--KKFKNFY 65

Query: 83  YDQARERYLESIMEFIKDKLLSPDIESKVRVT 114
            D +R+RY E  +  + +     +++ KV  T
Sbjct: 66  MDLSRQRYSEKTLNKLVEYAEEVELKKKVEKT 97


>pdb|1I1G|A Chain A, Crystal Structure Of The Lrp-Like Transcriptional
           Regulator From The Archaeon Pyrococcus Furiosus
 pdb|1I1G|B Chain B, Crystal Structure Of The Lrp-Like Transcriptional
           Regulator From The Archaeon Pyrococcus Furiosus
          Length = 141

 Score = 28.5 bits (62), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 17/71 (23%), Positives = 39/71 (54%), Gaps = 6/71 (8%)

Query: 15  AIIQLITRNVHYKAINWAERLIEIRGL----QRLMEVASELQEYKYESSMEITEDTHTLA 70
            II+  T  ++ K + ++  L+ I G+    ++L EVA +L+EY +   + ++   H + 
Sbjct: 46  GIIEGYTIKINPKKLGYS--LVTITGVDTKPEKLFEVAEKLKEYDFVKELYLSSGDHMIM 103

Query: 71  SLCLARIFENM 81
           ++  A+  E++
Sbjct: 104 AVIWAKDGEDL 114


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.137    0.383 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,871,004
Number of Sequences: 62578
Number of extensions: 121745
Number of successful extensions: 355
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 353
Number of HSP's gapped (non-prelim): 5
length of query: 163
length of database: 14,973,337
effective HSP length: 91
effective length of query: 72
effective length of database: 9,278,739
effective search space: 668069208
effective search space used: 668069208
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.7 bits)