Query psy4706
Match_columns 163
No_of_seqs 59 out of 61
Neff 3.7
Searched_HMMs 29240
Date Fri Aug 16 23:47:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4706.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4706hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3now_A UNC-45 protein, SD10334 100.0 5.4E-47 1.9E-51 357.8 12.2 158 4-161 158-320 (810)
2 1xqr_A HSPBP1 protein; armadil 89.7 1.8 6E-05 35.8 8.7 134 11-159 55-195 (296)
3 4hxt_A De novo protein OR329; 82.5 11 0.00036 27.5 8.9 94 63-159 99-198 (252)
4 4hxt_A De novo protein OR329; 81.7 11 0.00039 27.4 8.8 94 63-159 141-240 (252)
5 4db8_A Armadillo-repeat protei 80.5 15 0.00052 27.1 9.8 93 63-159 109-208 (252)
6 4db6_A Armadillo repeat protei 77.7 17 0.00058 26.1 8.7 94 63-159 109-208 (210)
7 4db8_A Armadillo-repeat protei 75.1 8.3 0.00028 28.6 6.4 95 63-159 25-124 (252)
8 2z6h_A Catenin beta-1, beta-ca 73.9 5 0.00017 35.2 5.6 92 63-159 27-126 (644)
9 3now_A UNC-45 protein, SD10334 71.0 18 0.00062 34.5 9.0 94 63-159 636-736 (810)
10 1b3u_A Protein (protein phosph 61.5 27 0.00091 28.9 7.2 88 63-156 493-583 (588)
11 2jdq_A Importin alpha-1 subuni 58.3 13 0.00044 29.8 4.7 95 64-160 34-136 (450)
12 4db6_A Armadillo repeat protei 56.4 39 0.0013 24.2 6.7 94 64-159 26-124 (210)
13 3opb_A SWI5-dependent HO expre 55.5 38 0.0013 32.5 8.1 136 10-159 471-634 (778)
14 1ibr_B P95, importin beta-1 su 54.9 48 0.0016 26.3 7.5 89 64-159 342-436 (462)
15 1xqr_A HSPBP1 protein; armadil 54.8 68 0.0023 26.2 8.6 111 35-158 120-236 (296)
16 1utg_A Uteroglobin; steroid bi 50.2 9.2 0.00031 25.8 2.2 23 61-83 47-69 (70)
17 1jdh_A Beta-catenin; beta-cate 47.0 43 0.0015 27.4 6.2 92 63-159 30-129 (529)
18 2r8q_A Class I phosphodiestera 44.6 54 0.0018 28.2 6.7 50 96-160 205-254 (359)
19 1ccd_A Clara cell 17 KD protei 43.6 11 0.00037 26.0 1.8 24 61-84 49-72 (77)
20 4b8j_A Importin subunit alpha- 41.6 1.5E+02 0.0052 24.6 10.8 93 64-159 132-231 (528)
21 1wa5_B Importin alpha subunit; 41.5 1.1E+02 0.0038 25.6 8.1 95 63-159 228-327 (530)
22 4b8j_A Importin subunit alpha- 40.1 31 0.0011 28.8 4.4 97 64-160 88-189 (528)
23 2foz_A ADP-ribosylhydrolase li 33.2 74 0.0025 25.7 5.5 37 60-102 57-93 (347)
24 2ksc_A Cyanoglobin; hemeprotei 31.6 63 0.0022 22.7 4.3 46 71-127 14-60 (123)
25 2w2u_A Hypothetical P60 katani 30.6 71 0.0024 21.9 4.3 42 9-50 12-55 (83)
26 1wa5_B Importin alpha subunit; 29.5 39 0.0013 28.4 3.3 98 63-160 100-202 (530)
27 4fdd_A Transportin-1; heat rep 29.1 49 0.0017 29.7 4.0 96 63-159 141-243 (852)
28 1s69_A Cyanoglobin, hemoglobin 29.0 56 0.0019 22.9 3.6 46 71-127 15-61 (124)
29 2jdq_A Importin alpha-1 subuni 28.6 2.2E+02 0.0074 22.5 9.3 94 63-159 78-178 (450)
30 3itu_A CGMP-dependent 3',5'-cy 28.3 1.2E+02 0.0041 25.9 6.2 52 94-160 183-234 (345)
31 2qrw_A Hemoglobin-like protein 27.4 82 0.0028 22.2 4.3 47 70-127 15-62 (128)
32 3f7c_A Protein of unknown func 26.9 51 0.0018 26.7 3.5 57 67-126 46-110 (200)
33 2gkm_A TRHBN, hemoglobin-like 26.7 58 0.002 23.5 3.4 44 72-126 27-71 (136)
34 1utr_A Uteroglobin; clara cell 26.5 29 0.00099 24.6 1.7 25 61-85 68-92 (96)
35 2v6y_A AAA family ATPase, P60 25.9 1.5E+02 0.0052 20.0 5.3 38 12-49 7-46 (83)
36 2db0_A 253AA long hypothetical 24.6 1.3E+02 0.0045 25.3 5.6 63 98-161 149-211 (253)
37 3v93_A Cyclic nucleotide speci 24.1 2E+02 0.0069 24.5 6.9 74 67-160 171-252 (345)
38 1f45_B Interleukin-12 alpha ch 22.4 36 0.0012 27.9 1.7 23 62-84 90-112 (197)
39 2yru_A Steroid receptor RNA ac 21.9 31 0.001 25.6 1.1 23 31-53 92-114 (118)
40 4a3n_A Transcription factor SO 21.9 1.2E+02 0.0041 18.9 3.9 30 67-97 30-59 (71)
41 2z6g_A B-catenin; FULL-length, 21.6 96 0.0033 28.3 4.6 95 63-159 163-262 (780)
42 2o1k_A NS28, non-structural gl 21.5 33 0.0011 22.7 1.1 15 73-87 32-46 (52)
43 3hfw_A Protein ADP-ribosylargi 21.5 3.1E+02 0.011 22.9 7.5 44 58-102 49-92 (357)
44 2v6x_A Vacuolar protein sortin 20.7 1.9E+02 0.0067 19.2 6.2 40 10-49 7-48 (85)
45 2bmm_A Thermostable hemoglobin 20.6 91 0.0031 21.7 3.4 45 72-127 15-60 (123)
46 1zkr_A Major allergen I polype 20.3 44 0.0015 26.4 1.8 25 61-85 49-73 (153)
47 1u6g_C TIP120 protein, CAND1; 20.0 3.7E+02 0.013 25.2 8.2 109 14-123 566-680 (1230)
No 1
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=100.00 E-value=5.4e-47 Score=357.75 Aligned_cols=158 Identities=50% Similarity=0.819 Sum_probs=153.7
Q ss_pred CCCCCCcchhHHHHHHHHHhhcccccchHHHHHHHHhHHHHHHhhhccccccccCcccCCcchhHHHHHHHHHHHhhhhc
Q psy4706 4 NNNNRLLSGRDAIIQLITRNVHYKAINWAERLIEIRGLQRLMEVASELQEYKYESSMEITEDTHTLASLCLARIFENMYY 83 (163)
Q Consensus 4 ~~~~vSg~gRD~~i~LL~KnVp~~~~~~~~~~~~~~GLkrLLeVa~~~~e~~~~~~lpvT~nTRm~aSV~LskLYDdm~~ 83 (163)
.+.+|||+|||+|||||+|||||++++|+++|++.+||+|||+|||++|||||+++||||+||||||||||+||||||+|
T Consensus 158 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~~~~~~~ 237 (810)
T 3now_A 158 TDRTISGAARDGVIELITRNVHYTALEWAERLVEIRGLCRLLDVCSELEDYKYESAMDITGSSSTIASVCLARIYENMYY 237 (810)
T ss_dssp TCTTSCHHHHHHHHHHHHHHTTCTTTTHHHHHHHTTHHHHHHHHHTCCSSSCCSSCCCCCTTHHHHHHHHHHHHHHTCCS
T ss_pred hccccChhhHHHHHHHHHHhCCccccccccchhhHhhHHHHHHHHhcCccccccccCCCChhHHHHHHHHHHHHHHHhcc
Confidence 46789999999999999999999999999999998899999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHhhhhhhhhhcccCCCCccc-----cCCchhHHHHHHHHHHHHHH
Q psy4706 84 DQARERYLESIMEFIKDKLLSPDIESKVRVTVAITCLLLASLVSLEGSAPRSRVR-----FPPRANFVLNRRTCQVYLIV 158 (163)
Q Consensus 84 D~~Re~F~~~ce~fik~~~~~~d~eskvrai~~is~LLqGP~DVGn~~l~~~gv~-----~~~s~~~~~q~va~ea~i~a 158 (163)
|++||+|+++|++||++||.++++++|++|++++|++++||+|+|+.++..+|++ ++.|++...|+.|+|++.++
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~alt~i~~g~~~~~~~~~~~~G~v~~li~Ll~s~~~~~q~~A~~al~~a 317 (810)
T 3now_A 238 DEAKARFTDQIDEYIKDKLLAPDMESKVRVTVAITALLNGPLDVGNQVVAREGILQMILAMATTDDELQQRVACECLIAA 317 (810)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHSSSHHHHHHHHHTTTHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHhccCChHhHHHHHHHHHHHhcCCHHHHHHHHhccchHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999998 66999999999999999999
Q ss_pred hcc
Q psy4706 159 AGE 161 (163)
Q Consensus 159 a~k 161 (163)
|++
T Consensus 318 a~~ 320 (810)
T 3now_A 318 SSK 320 (810)
T ss_dssp TTS
T ss_pred cCC
Confidence 985
No 2
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=89.66 E-value=1.8 Score=35.78 Aligned_cols=134 Identities=13% Similarity=0.111 Sum_probs=88.1
Q ss_pred chhHHHHHHHHHhhcccccchHHHHHHHHhHHHHHH-hhhccccccccCcccCCcchhHHHHHHHHHHHhhhhccHHHHH
Q psy4706 11 SGRDAIIQLITRNVHYKAINWAERLIEIRGLQRLME-VASELQEYKYESSMEITEDTHTLASLCLARIFENMYYDQARER 89 (163)
Q Consensus 11 ~gRD~~i~LL~KnVp~~~~~~~~~~~~~~GLkrLLe-Va~~~~e~~~~~~lpvT~nTRm~aSV~LskLYDdm~~D~~Re~ 89 (163)
..|-.+++.|..-+. +++|+..++..+|+..|++ .-.. | .++-|..|+-+|..|..+ .+..|+.
T Consensus 55 e~k~~Al~~L~~lv~--~~dna~~~~~~G~l~~Lv~~lL~s-~----------~~~vr~~Aa~~Lg~ia~~--n~~~~~~ 119 (296)
T 1xqr_A 55 QEREGALELLADLCE--NMDNAADFCQLSGMHLLVGRYLEA-G----------AAGLRWRAAQLIGTCSQN--VAAIQEQ 119 (296)
T ss_dssp HHHHHHHHHHHHHHT--SHHHHHHHHHTTHHHHHHHTTTTC-S----------SHHHHHHHHHHHHHHHTT--CHHHHHH
T ss_pred HHHHHHHHHHHHHHh--ChhhHHHHHHcCCHHHHHHHHHcC-C----------CHHHHHHHHHHHHHHHhC--CHHHHHH
Confidence 345567777766664 4568888888899988887 3211 1 456799999999999864 2344554
Q ss_pred HHH-HHHHHHHhhcC-CCCcchhHHHHHHHHHhhhhhhhhhcccCCCCccc----cCCchhHHHHHHHHHHHHHHh
Q psy4706 90 YLE-SIMEFIKDKLL-SPDIESKVRVTVAITCLLLASLVSLEGSAPRSRVR----FPPRANFVLNRRTCQVYLIVA 159 (163)
Q Consensus 90 F~~-~ce~fik~~~~-~~d~eskvrai~~is~LLqGP~DVGn~~l~~~gv~----~~~s~~~~~q~va~ea~i~aa 159 (163)
+.+ -+=..+-.++. +++.+.+..|+-+||+|..|.-+.-..++...|+- +-.+.+..-|+.||-||-+.+
T Consensus 120 vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~ 195 (296)
T 1xqr_A 120 VLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLL 195 (296)
T ss_dssp HHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 443 12223334444 45778889999999999987544333444433332 335678888999999887754
No 3
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=82.46 E-value=11 Score=27.53 Aligned_cols=94 Identities=14% Similarity=0.107 Sum_probs=62.6
Q ss_pred CcchhHHHHHHHHHHHhhhhccHHHHHHHH-HHHHHHHhhcCCCCcchhHHHHHHHHHhhhhhhhhhcccCCCCccc---
Q psy4706 63 TEDTHTLASLCLARIFENMYYDQARERYLE-SIMEFIKDKLLSPDIESKVRVTVAITCLLLASLVSLEGSAPRSRVR--- 138 (163)
Q Consensus 63 T~nTRm~aSV~LskLYDdm~~D~~Re~F~~-~ce~fik~~~~~~d~eskvrai~~is~LLqGP~DVGn~~l~~~gv~--- 138 (163)
+++.|..|.-+|..|-. ..+..++.+.+ -+=..+-..+.+++.+.+..|+.+++.|..++-+.-..++. .|++
T Consensus 99 ~~~v~~~a~~~L~~l~~--~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~~L 175 (252)
T 4hxt_A 99 DSEVQKEAARALANIAS--GPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVD-AGGVEVL 175 (252)
T ss_dssp SHHHHHHHHHHHHHHTT--SCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTHHHHH
T ss_pred CHHHHHHHHHHHHHHHc--CCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH-CcCHHHH
Confidence 36778889988998874 22333433333 13344556667888899999999999999887655444444 3333
Q ss_pred --cCCchhHHHHHHHHHHHHHHh
Q psy4706 139 --FPPRANFVLNRRTCQVYLIVA 159 (163)
Q Consensus 139 --~~~s~~~~~q~va~ea~i~aa 159 (163)
+..+.+...|..|+.+|-..+
T Consensus 176 ~~ll~~~~~~v~~~a~~~L~~l~ 198 (252)
T 4hxt_A 176 VKLLTSTDSEVQKEAARALANIA 198 (252)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHHT
T ss_pred HHHHCCCCHHHHHHHHHHHHHHH
Confidence 335666777888888876654
No 4
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=81.69 E-value=11 Score=27.37 Aligned_cols=94 Identities=13% Similarity=0.100 Sum_probs=61.4
Q ss_pred CcchhHHHHHHHHHHHhhhhccHHHHHHH-HHHHHHHHhhcCCCCcchhHHHHHHHHHhhhhhhhhhcccCCCCccc---
Q psy4706 63 TEDTHTLASLCLARIFENMYYDQARERYL-ESIMEFIKDKLLSPDIESKVRVTVAITCLLLASLVSLEGSAPRSRVR--- 138 (163)
Q Consensus 63 T~nTRm~aSV~LskLYDdm~~D~~Re~F~-~~ce~fik~~~~~~d~eskvrai~~is~LLqGP~DVGn~~l~~~gv~--- 138 (163)
+++.|..+.-+|..|-.+ .+..++.+. .-+-..+.+.+.+++.+.+..|+.+++.|..+.-+.-..++. .|++
T Consensus 141 ~~~~~~~a~~~L~~l~~~--~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~-~~~i~~L 217 (252)
T 4hxt_A 141 DSEVQKEAARALANIASG--PDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVD-AGGVEVL 217 (252)
T ss_dssp CHHHHHHHHHHHHHHTTS--CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHH-TTHHHHH
T ss_pred CHHHHHHHHHHHHHHHcC--CHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH-CCCHHHH
Confidence 356788888888888543 222222222 223445556667888899999999999999875554444333 3333
Q ss_pred --cCCchhHHHHHHHHHHHHHHh
Q psy4706 139 --FPPRANFVLNRRTCQVYLIVA 159 (163)
Q Consensus 139 --~~~s~~~~~q~va~ea~i~aa 159 (163)
+..+.+..-|..|+.+|-.-+
T Consensus 218 ~~ll~~~~~~v~~~a~~~L~~l~ 240 (252)
T 4hxt_A 218 QKLLTSTDSEVQKEAQRALENIK 240 (252)
T ss_dssp HHGGGCSCHHHHHHHHHHHHHHH
T ss_pred HHHHCCCcHHHHHHHHHHHHHHH
Confidence 445667778889998886654
No 5
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=80.54 E-value=15 Score=27.13 Aligned_cols=93 Identities=11% Similarity=0.065 Sum_probs=60.9
Q ss_pred CcchhHHHHHHHHHHHhhhhccHHH-HHHHH-HHHHHHHhhcCCCCcchhHHHHHHHHHhhhhhhhhhcccCCCCccc--
Q psy4706 63 TEDTHTLASLCLARIFENMYYDQAR-ERYLE-SIMEFIKDKLLSPDIESKVRVTVAITCLLLASLVSLEGSAPRSRVR-- 138 (163)
Q Consensus 63 T~nTRm~aSV~LskLYDdm~~D~~R-e~F~~-~ce~fik~~~~~~d~eskvrai~~is~LLqGP~DVGn~~l~~~gv~-- 138 (163)
.++.|..|.-+|..|-++ +..| ..+.+ -+=..+-+.+.+++.+.+..|+.+++.|..++-+.-..++. .|++
T Consensus 109 ~~~v~~~a~~~L~~l~~~---~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~~ 184 (252)
T 4db8_A 109 NEQILQEALWALSNIASG---GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVID-AGALPA 184 (252)
T ss_dssp CHHHHHHHHHHHHHHTTS---CHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTCHHH
T ss_pred CHHHHHHHHHHHHHhhcC---CchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHH-CCCHHH
Confidence 457799999999998553 3333 33332 24455666777888889999999999999887544333332 2332
Q ss_pred ---cCCchhHHHHHHHHHHHHHHh
Q psy4706 139 ---FPPRANFVLNRRTCQVYLIVA 159 (163)
Q Consensus 139 ---~~~s~~~~~q~va~ea~i~aa 159 (163)
+..+.+...|..|+.+|-.-+
T Consensus 185 L~~ll~~~~~~v~~~a~~~L~~l~ 208 (252)
T 4db8_A 185 LVQLLSSPNEQILQEALWALSNIA 208 (252)
T ss_dssp HHHGGGCSSHHHHHHHHHHHHHHT
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHh
Confidence 334556677888888877654
No 6
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=77.73 E-value=17 Score=26.12 Aligned_cols=94 Identities=10% Similarity=0.046 Sum_probs=60.7
Q ss_pred CcchhHHHHHHHHHHHhhhhccHHHHHHH-HHHHHHHHhhcCCCCcchhHHHHHHHHHhhhhhhhhhcccCCCCccc---
Q psy4706 63 TEDTHTLASLCLARIFENMYYDQARERYL-ESIMEFIKDKLLSPDIESKVRVTVAITCLLLASLVSLEGSAPRSRVR--- 138 (163)
Q Consensus 63 T~nTRm~aSV~LskLYDdm~~D~~Re~F~-~~ce~fik~~~~~~d~eskvrai~~is~LLqGP~DVGn~~l~~~gv~--- 138 (163)
.++.|..|.-+|..|-.+ .+..++.+. .-+=..+-+.+.+++.+.+..|+.+++.|..+.-+.-..+.+ .|++
T Consensus 109 ~~~v~~~a~~~L~~l~~~--~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~-~g~i~~L 185 (210)
T 4db6_A 109 NEQILQEALWALSNIASG--GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKE-AGALEKL 185 (210)
T ss_dssp CHHHHHHHHHHHHHHTTS--CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHH-TTHHHHH
T ss_pred cHHHHHHHHHHHHHHHcC--CHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcHHHHHHHH-CCCHHHH
Confidence 467788999899988642 122222222 223344445567788899999999999999884333333333 2332
Q ss_pred --cCCchhHHHHHHHHHHHHHHh
Q psy4706 139 --FPPRANFVLNRRTCQVYLIVA 159 (163)
Q Consensus 139 --~~~s~~~~~q~va~ea~i~aa 159 (163)
+..+++..-|+.|+.+|-.-|
T Consensus 186 ~~ll~~~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 186 EQLQSHENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp HHGGGCSCHHHHHHHHHHHHHHC
T ss_pred HHHHhCCCHHHHHHHHHHHHHHh
Confidence 446777888999999987654
No 7
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=75.11 E-value=8.3 Score=28.59 Aligned_cols=95 Identities=8% Similarity=0.057 Sum_probs=61.0
Q ss_pred CcchhHHHHHHHHHHHhhhhccHHHHHHHH-HHHHHHHhhcCCCCcchhHHHHHHHHHhhhhhhhhhcccCCCCccc---
Q psy4706 63 TEDTHTLASLCLARIFENMYYDQARERYLE-SIMEFIKDKLLSPDIESKVRVTVAITCLLLASLVSLEGSAPRSRVR--- 138 (163)
Q Consensus 63 T~nTRm~aSV~LskLYDdm~~D~~Re~F~~-~ce~fik~~~~~~d~eskvrai~~is~LLqGP~DVGn~~l~~~gv~--- 138 (163)
.++.|..|.-+|.++-.. .+..++.+.+ -+=..+-..+.+++.+.+..|+.+++.|-.|.-+.-..++...++-
T Consensus 25 ~~~~~~~a~~~L~~~l~~--~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~ 102 (252)
T 4db8_A 25 DMQEQLSATRKFSQILSD--GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALV 102 (252)
T ss_dssp CSSHHHHHHHHHHHHHHH--HHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcC--CCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHH
Confidence 456789999999877666 3444443332 2334455666777888999999999999887555444444332221
Q ss_pred -cCCchhHHHHHHHHHHHHHHh
Q psy4706 139 -FPPRANFVLNRRTCQVYLIVA 159 (163)
Q Consensus 139 -~~~s~~~~~q~va~ea~i~aa 159 (163)
+-.+++...|..|+.+|-..+
T Consensus 103 ~lL~~~~~~v~~~a~~~L~~l~ 124 (252)
T 4db8_A 103 QLLSSPNEQILQEALWALSNIA 124 (252)
T ss_dssp HGGGCSCHHHHHHHHHHHHHHT
T ss_pred HHHcCCCHHHHHHHHHHHHHhh
Confidence 335566677888888776543
No 8
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=73.87 E-value=5 Score=35.18 Aligned_cols=92 Identities=7% Similarity=-0.079 Sum_probs=64.0
Q ss_pred CcchhHHHHHHHHHHHhhhhccHHHHHHH---HHHHHHHHhhcCCCCcchhHHHHHHHHHhhhhhhhhhcccCCCCccc-
Q psy4706 63 TEDTHTLASLCLARIFENMYYDQARERYL---ESIMEFIKDKLLSPDIESKVRVTVAITCLLLASLVSLEGSAPRSRVR- 138 (163)
Q Consensus 63 T~nTRm~aSV~LskLYDdm~~D~~Re~F~---~~ce~fik~~~~~~d~eskvrai~~is~LLqGP~DVGn~~l~~~gv~- 138 (163)
.+.+|..|+.+|.+|-++-. .|..+. ..+...++-+-.+++.+.+..|+.++..|-..+ + +...+...|++
T Consensus 27 ~~~vr~~A~~~L~~La~~~~---~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~-~-~~~~i~~~g~i~ 101 (644)
T 2z6h_A 27 DQVVVNKAAVMVHQLSKKEA---SRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHR-E-GLLAIFKSGGIP 101 (644)
T ss_dssp CHHHHHHHHHHHHHHHTSTT---HHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSH-H-HHHHHHTTTHHH
T ss_pred CHHHHHHHHHHHHHHHCCCh---hHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCh-h-hHHHHHHcCCHH
Confidence 35789999999999987653 332221 445555555545668899999999999766654 3 44455555655
Q ss_pred ----cCCchhHHHHHHHHHHHHHHh
Q psy4706 139 ----FPPRANFVLNRRTCQVYLIVA 159 (163)
Q Consensus 139 ----~~~s~~~~~q~va~ea~i~aa 159 (163)
+..|.+..-|..|+++|.+.+
T Consensus 102 ~Lv~lL~~~~~~v~~~A~~aL~nL~ 126 (644)
T 2z6h_A 102 ALVKMLGSPVDSVLFYAITTLHNLL 126 (644)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 446777888999999998765
No 9
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=71.05 E-value=18 Score=34.50 Aligned_cols=94 Identities=12% Similarity=0.074 Sum_probs=69.0
Q ss_pred CcchhHHHHHHHHHHHhhhhccHHHHHHHH--HHHHHHHhhcCCCCcchhHHHHHHHHHhhhhhhhhhcccCCCCccc--
Q psy4706 63 TEDTHTLASLCLARIFENMYYDQARERYLE--SIMEFIKDKLLSPDIESKVRVTVAITCLLLASLVSLEGSAPRSRVR-- 138 (163)
Q Consensus 63 T~nTRm~aSV~LskLYDdm~~D~~Re~F~~--~ce~fik~~~~~~d~eskvrai~~is~LLqGP~DVGn~~l~~~gv~-- 138 (163)
.+..|..|.-||..|- .++..+..|.+ -+-..+-.++..++.+.+..|+.+|+.|-.|.-+.-..++...|.+
T Consensus 636 ~~~Vq~~A~~~L~NLa---~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~ 712 (810)
T 3now_A 636 HLYLTRAAAQCLCNLV---MSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDI 712 (810)
T ss_dssp CTTHHHHHHHHHHHHT---TSHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHH
T ss_pred CHHHHHHHHHHHHHHh---CChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHH
Confidence 3556888888888774 45566777763 2334555667788999999999999999998556556666644443
Q ss_pred ---cCCchhHHHHHHHHHHHHHHh
Q psy4706 139 ---FPPRANFVLNRRTCQVYLIVA 159 (163)
Q Consensus 139 ---~~~s~~~~~q~va~ea~i~aa 159 (163)
+..++++..|..|+.|+...+
T Consensus 713 Lv~LL~s~d~~vq~~A~~aL~NL~ 736 (810)
T 3now_A 713 LHTLIANPSPAVQHRGIVIILNMI 736 (810)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHH
Confidence 668899999999999996653
No 10
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=61.51 E-value=27 Score=28.86 Aligned_cols=88 Identities=5% Similarity=-0.023 Sum_probs=57.7
Q ss_pred CcchhHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHhhh--hhhhhhcccCCCCcc-cc
Q psy4706 63 TEDTHTLASLCLARIFENMYYDQARERYLESIMEFIKDKLLSPDIESKVRVTVAITCLLL--ASLVSLEGSAPRSRV-RF 139 (163)
Q Consensus 63 T~nTRm~aSV~LskLYDdm~~D~~Re~F~~~ce~fik~~~~~~d~eskvrai~~is~LLq--GP~DVGn~~l~~~gv-~~ 139 (163)
....|..+.-++..|-+.+.. +.|.+.+-..+...+.+++.+.+..++.+++.+.. |+-.....++ +-+ .+
T Consensus 493 ~~~~R~~a~~~l~~l~~~~~~----~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~--p~l~~l 566 (588)
T 1b3u_A 493 NYLHRMTTLFCINVLSEVCGQ----DITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVK--PILEKL 566 (588)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH----HHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHHHHHHHHH--HHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcCH----HHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhchhhhHHHHH--HHHHHH
Confidence 456788888889988876542 23666666667777778888888889999998875 4322211111 111 13
Q ss_pred CCchhHHHHHHHHHHHH
Q psy4706 140 PPRANFVLNRRTCQVYL 156 (163)
Q Consensus 140 ~~s~~~~~q~va~ea~i 156 (163)
..+.+...+..|++|+-
T Consensus 567 ~~d~d~~vr~~a~~al~ 583 (588)
T 1b3u_A 567 TQDQDVDVKYFAQEALT 583 (588)
T ss_dssp TTCSSHHHHHHHHHHHH
T ss_pred cCCCchhHHHHHHHHHH
Confidence 45667778888888874
No 11
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=58.34 E-value=13 Score=29.77 Aligned_cols=95 Identities=7% Similarity=0.003 Sum_probs=57.2
Q ss_pred cchhHHHHHHHHHHHhhhhccHHHHHHH--HHHHHHHHhhcCCC-CcchhHHHHHHHHHhhhhhhhhhcccCCCCccc--
Q psy4706 64 EDTHTLASLCLARIFENMYYDQARERYL--ESIMEFIKDKLLSP-DIESKVRVTVAITCLLLASLVSLEGSAPRSRVR-- 138 (163)
Q Consensus 64 ~nTRm~aSV~LskLYDdm~~D~~Re~F~--~~ce~fik~~~~~~-d~eskvrai~~is~LLqGP~DVGn~~l~~~gv~-- 138 (163)
++.|..|..+|.++-..-..++.++.+. ..+..+++ .+.++ +.+.+..|+.+++.+..|..+.-..++. .|++
T Consensus 34 ~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~-~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~~ 111 (450)
T 2jdq_A 34 PEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVE-FLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQ-AGAVPI 111 (450)
T ss_dssp HHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHH-HHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHH-TTHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHH-HHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHh-CCCHHH
Confidence 4569999999999843211222233222 23333333 33444 7888999999999999875543333322 3332
Q ss_pred ---cCCchhHHHHHHHHHHHHHHhc
Q psy4706 139 ---FPPRANFVLNRRTCQVYLIVAG 160 (163)
Q Consensus 139 ---~~~s~~~~~q~va~ea~i~aa~ 160 (163)
+..|.+...|..|+.+|-..++
T Consensus 112 L~~lL~~~~~~vr~~a~~~L~~l~~ 136 (450)
T 2jdq_A 112 FIELLSSEFEDVQEQAVWALGNIAG 136 (450)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHcc
Confidence 3456677778888888866554
No 12
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=56.44 E-value=39 Score=24.15 Aligned_cols=94 Identities=10% Similarity=0.021 Sum_probs=60.8
Q ss_pred cchhHHHHHHHHHHHhhhhccHHHHHHHH-HHHHHHHhhcCCCCcchhHHHHHHHHHhhhhhhhhhcccCCCCccc----
Q psy4706 64 EDTHTLASLCLARIFENMYYDQARERYLE-SIMEFIKDKLLSPDIESKVRVTVAITCLLLASLVSLEGSAPRSRVR---- 138 (163)
Q Consensus 64 ~nTRm~aSV~LskLYDdm~~D~~Re~F~~-~ce~fik~~~~~~d~eskvrai~~is~LLqGP~DVGn~~l~~~gv~---- 138 (163)
++.|..|.-+|..|-. ..+..|+.+.+ -+=..+-+.+.+++.+.+..|+.+++.|..+.-+.-..++...++-
T Consensus 26 ~~v~~~a~~~L~~l~~--~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ 103 (210)
T 4db6_A 26 QQELQSALRKLSQIAS--GGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQ 103 (210)
T ss_dssp HHHHHHHHHHHHHHHT--SCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHc--CCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHH
Confidence 4668888888888852 12333444433 2334555666778888899999999999877666555554433331
Q ss_pred cCCchhHHHHHHHHHHHHHHh
Q psy4706 139 FPPRANFVLNRRTCQVYLIVA 159 (163)
Q Consensus 139 ~~~s~~~~~q~va~ea~i~aa 159 (163)
+-.+.+...|..|+.+|-+.+
T Consensus 104 lL~~~~~~v~~~a~~~L~~l~ 124 (210)
T 4db6_A 104 LLSSPNEQILQEALWALSNIA 124 (210)
T ss_dssp HTTCSCHHHHHHHHHHHHHHT
T ss_pred HHcCCcHHHHHHHHHHHHHHH
Confidence 345666777888888776654
No 13
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=55.50 E-value=38 Score=32.51 Aligned_cols=136 Identities=13% Similarity=0.194 Sum_probs=84.0
Q ss_pred cchhHHHHHHHHHhhcccccchHHHHHHHHhHHHHHHhhhccccccccCcccCCcchhHHHHHHHHHHHhhhhccHHHHH
Q psy4706 10 LSGRDAIIQLITRNVHYKAINWAERLIEIRGLQRLMEVASELQEYKYESSMEITEDTHTLASLCLARIFENMYYDQARER 89 (163)
Q Consensus 10 g~gRD~~i~LL~KnVp~~~~~~~~~~~~~~GLkrLLeVa~~~~e~~~~~~lpvT~nTRm~aSV~LskLYDdm~~D~~Re~ 89 (163)
..-|..++..|..-. .+...-..++.-+|++-|+++..+-++ . ++..|..|+-.|+||- ...|++. -
T Consensus 471 ~~~re~A~~aL~nLS--~d~~~R~~lvqqGal~~LL~lL~s~~~--~------~~~~k~~AA~ALArLl--is~np~~-~ 537 (778)
T 3opb_A 471 PNCKQQVVRIIYNIT--RSKNFIPQLAQQGAVKIILEYLANKQD--I------GEPIRILGCRALTRML--IFTNPGL-I 537 (778)
T ss_dssp HHHHHHHHHHHHHHH--TSGGGHHHHHHTTHHHHHHHHTTCC-----------CCHHHHHHHHHHHHHH--HTSCHHH-H
T ss_pred HHHHHHHHHHHHHHc--CCHHHHHHHHHCCCHHHHHHHHhcCCC--c------chHHHHHHHHHHHHHH--hcCCHHH-H
Confidence 334555554443332 223333444444688999999876543 1 1357999999999987 2334432 2
Q ss_pred HH-----HHHHHHHHhhcCC-CCcch-------------hHHHHHHHHHhhhhh----hhhhcccCCCCccc-----cCC
Q psy4706 90 YL-----ESIMEFIKDKLLS-PDIES-------------KVRVTVAITCLLLAS----LVSLEGSAPRSRVR-----FPP 141 (163)
Q Consensus 90 F~-----~~ce~fik~~~~~-~d~es-------------kvrai~~is~LLqGP----~DVGn~~l~~~gv~-----~~~ 141 (163)
|. + +-.+.-+++.+ ++-+. +.+|.-++|-|-.+| =|+..+++...|++ +.-
T Consensus 538 f~~~~~~~-aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~ 616 (778)
T 3opb_A 538 FKKYSALN-AIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLML 616 (778)
T ss_dssp SSSSCSTT-HHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGG
T ss_pred cCCCcccc-chHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHh
Confidence 21 2 33455566652 33322 789999999999999 46777777754554 446
Q ss_pred chhHHHHHHHHHHHHHHh
Q psy4706 142 RANFVLNRRTCQVYLIVA 159 (163)
Q Consensus 142 s~~~~~q~va~ea~i~aa 159 (163)
|++..-|+-|||++-.-+
T Consensus 617 s~n~~VrrAA~elI~NL~ 634 (778)
T 3opb_A 617 DENVPLQRSTLELISNMM 634 (778)
T ss_dssp CSSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHh
Confidence 778889999999986543
No 14
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=54.87 E-value=48 Score=26.33 Aligned_cols=89 Identities=16% Similarity=0.230 Sum_probs=59.4
Q ss_pred cchhHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHhhhhhh-hhhcccCCCCccc----
Q psy4706 64 EDTHTLASLCLARIFENMYYDQARERYLESIMEFIKDKLLSPDIESKVRVTVAITCLLLASL-VSLEGSAPRSRVR---- 138 (163)
Q Consensus 64 ~nTRm~aSV~LskLYDdm~~D~~Re~F~~~ce~fik~~~~~~d~eskvrai~~is~LLqGP~-DVGn~~l~~~gv~---- 138 (163)
.+.|..|.-+|..|...+. + .....+-.++...+.+++...+..|+.+++.+..|+- +.=...+ +.++
T Consensus 342 ~~~r~~a~~~L~~l~~~~~-~----~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l--~~~~~~l~ 414 (462)
T 1ibr_B 342 WNPCKAAGVCLMLLATCCE-D----DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV--IQAMPTLI 414 (462)
T ss_dssp CSHHHHHHHHHHHHHHHTT-T----THHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTT--TTHHHHHH
T ss_pred chHHHHHHHHHHHHHHhcc-H----HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHH--HHHHHHHH
Confidence 3678888888988888765 3 2234456777788888889999999999999999864 2111111 3332
Q ss_pred -cCCchhHHHHHHHHHHHHHHh
Q psy4706 139 -FPPRANFVLNRRTCQVYLIVA 159 (163)
Q Consensus 139 -~~~s~~~~~q~va~ea~i~aa 159 (163)
...+.+..-+..||.++-..+
T Consensus 415 ~~l~d~~~~Vr~~a~~~l~~~~ 436 (462)
T 1ibr_B 415 ELMKDPSVVVRDTAAWTVGRIC 436 (462)
T ss_dssp HGGGCSCHHHHHHHHHHHHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHHH
Confidence 224555666777777775543
No 15
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=54.84 E-value=68 Score=26.17 Aligned_cols=111 Identities=7% Similarity=0.099 Sum_probs=70.2
Q ss_pred HHHHHhHHHHHHhhhccccccccCcccCCcchhHHHHHHHHHHHhhhhccHHHHHHHH-HHHHHHHhhcCCCCcchhHHH
Q psy4706 35 LIEIRGLQRLMEVASELQEYKYESSMEITEDTHTLASLCLARIFENMYYDQARERYLE-SIMEFIKDKLLSPDIESKVRV 113 (163)
Q Consensus 35 ~~~~~GLkrLLeVa~~~~e~~~~~~lpvT~nTRm~aSV~LskLYDdm~~D~~Re~F~~-~ce~fik~~~~~~d~eskvra 113 (163)
++..+|+..|++.-..-+ .++-|-.|.-+|+.|-.+ +.+..+.|.+ -.=..+...+.+++.+.+.+|
T Consensus 120 vv~~g~l~~Ll~LL~~~~----------~~~v~~~A~~ALsnl~~~--~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A 187 (296)
T 1xqr_A 120 VLGLGALRKLLRLLDRDA----------CDTVRVKALFAISCLVRE--QEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKS 187 (296)
T ss_dssp HHHTTHHHHHHHHHHHCS----------CHHHHHHHHHHHHHHHTT--CHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHH
T ss_pred HHHCCCHHHHHHHHccCC----------CHHHHHHHHHHHHHHHcC--CcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHH
Confidence 334468888887765421 245577888888877532 2334455554 122244455567899999999
Q ss_pred HHHHHHhhhhhhhhhcccCCCCccc-----cCCchhHHHHHHHHHHHHHH
Q psy4706 114 TVAITCLLLASLVSLEGSAPRSRVR-----FPPRANFVLNRRTCQVYLIV 158 (163)
Q Consensus 114 i~~is~LLqGP~DVGn~~l~~~gv~-----~~~s~~~~~q~va~ea~i~a 158 (163)
+.+|+.|..|.-+.-..+++ .|++ +-.+.+..-|..|+.||-.-
T Consensus 188 ~~aLs~L~~~~~~~~~~vv~-~g~i~~Lv~LL~~~d~~v~~~al~aL~~l 236 (296)
T 1xqr_A 188 AFLLQNLLVGHPEHKGTLCS-MGMVQQLVALVRTEHSPFHEHVLGALCSL 236 (296)
T ss_dssp HHHHHHHHHHCGGGHHHHHH-TTHHHHHHHHHTSCCSTHHHHHHHHHHHH
T ss_pred HHHHHHHHhCChHHHHHHHH-cCCHHHHHHHHcCCChhHHHHHHHHHHHH
Confidence 99999999995554444443 3443 33556667788888887543
No 16
>1utg_A Uteroglobin; steroid binding; 1.34A {Oryctolagus cuniculus} SCOP: a.101.1.1 PDB: 2utg_A
Probab=50.23 E-value=9.2 Score=25.84 Aligned_cols=23 Identities=9% Similarity=0.056 Sum_probs=20.8
Q ss_pred cCCcchhHHHHHHHHHHHhhhhc
Q psy4706 61 EITEDTHTLASLCLARIFENMYY 83 (163)
Q Consensus 61 pvT~nTRm~aSV~LskLYDdm~~ 83 (163)
.+|++||.++..+|.|||.+-.|
T Consensus 47 ~ls~e~~~~i~~~l~kI~~S~~C 69 (70)
T 1utg_A 47 SLPQTTRENIMKLTEKIVKSPLC 69 (70)
T ss_dssp TSCHHHHHHHHHHHHHHHTSGGG
T ss_pred hCCHHHHHHHHHHHHHHHcCcCC
Confidence 78999999999999999988766
No 17
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=47.03 E-value=43 Score=27.44 Aligned_cols=92 Identities=7% Similarity=-0.075 Sum_probs=58.8
Q ss_pred CcchhHHHHHHHHHHHhhhhccHHHHHHH---HHHHHHHHhhcCCCCcchhHHHHHHHHHhhhhhhhhhcccCCCCccc-
Q psy4706 63 TEDTHTLASLCLARIFENMYYDQARERYL---ESIMEFIKDKLLSPDIESKVRVTVAITCLLLASLVSLEGSAPRSRVR- 138 (163)
Q Consensus 63 T~nTRm~aSV~LskLYDdm~~D~~Re~F~---~~ce~fik~~~~~~d~eskvrai~~is~LLqGP~DVGn~~l~~~gv~- 138 (163)
.+..|..|+.+|.+|-.+- ..|.... ..++..++-+-.+++.+.+..|+.++..|-..|- +...+...|++
T Consensus 30 ~~~v~~~A~~~L~~l~~~~---~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~--~~~~i~~~g~i~ 104 (529)
T 1jdh_A 30 DQVVVNKAAVMVHQLSKKE---ASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHRE--GLLAIFKSGGIP 104 (529)
T ss_dssp CHHHHHHHHHHHHHHHTSH---HHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHH--HHHHHHHTTHHH
T ss_pred CHHHHHHHHHHHHHHHcCC---ccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCch--hHHHHHHcCCHH
Confidence 3467999999999987543 3332222 3344444333345688889999999999876643 33333334544
Q ss_pred ----cCCchhHHHHHHHHHHHHHHh
Q psy4706 139 ----FPPRANFVLNRRTCQVYLIVA 159 (163)
Q Consensus 139 ----~~~s~~~~~q~va~ea~i~aa 159 (163)
+..+.+..-|..|+.+|.+.+
T Consensus 105 ~L~~lL~~~~~~v~~~a~~~L~~l~ 129 (529)
T 1jdh_A 105 ALVKMLGSPVDSVLFYAITTLHNLL 129 (529)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 446677778889999987764
No 18
>2r8q_A Class I phosphodiesterase PDEB1; leishimaniasis, parasite inhibitor selectivity, CAMP phosphodiesterase, hydrolase; HET: IBM; 1.50A {Leishmania major}
Probab=44.62 E-value=54 Score=28.19 Aligned_cols=50 Identities=14% Similarity=0.100 Sum_probs=36.5
Q ss_pred HHHHhhcCCCCcchhHHHHHHHHHhhhhhhhhhcccCCCCccccCCchhHHHHHHHHHHHHHHhc
Q psy4706 96 EFIKDKLLSPDIESKVRVTVAITCLLLASLVSLEGSAPRSRVRFPPRANFVLNRRTCQVYLIVAG 160 (163)
Q Consensus 96 ~fik~~~~~~d~eskvrai~~is~LLqGP~DVGn~~l~~~gv~~~~s~~~~~q~va~ea~i~aa~ 160 (163)
+.|.+....-||...-+-+..+-.++.|++|.. +..+....++.+||+|+
T Consensus 205 ~~ii~~ILATDm~~Hf~~l~~~~~~~~~~~~~~---------------~~~~r~lll~~lik~AD 254 (359)
T 2r8q_A 205 RALIDCVLATDMAKHADALSRFTELATSGFEKD---------------NDTHRRLVMETLIKAGD 254 (359)
T ss_dssp HHHHHHHHTTCGGGHHHHHHHHHHHHHHCCCTT---------------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcChHhHHHHHHHHHHHhhcccCcC---------------cHHHHHHHHHHHHHhcc
Confidence 456666666799988888888888888877643 33455667888999886
No 19
>1ccd_A Clara cell 17 KD protein; phospholipase A2 inhibitor; 3.00A {Rattus rattus} SCOP: a.101.1.1
Probab=43.64 E-value=11 Score=26.01 Aligned_cols=24 Identities=8% Similarity=0.131 Sum_probs=21.5
Q ss_pred cCCcchhHHHHHHHHHHHhhhhcc
Q psy4706 61 EITEDTHTLASLCLARIFENMYYD 84 (163)
Q Consensus 61 pvT~nTRm~aSV~LskLYDdm~~D 84 (163)
.+|++||.++..+|.|||.+-.|.
T Consensus 49 ~ls~e~r~~i~~~l~kI~~S~~C~ 72 (77)
T 1ccd_A 49 TLPQETRINIVKLTEKILTSPLCE 72 (77)
T ss_dssp HSCHHHHHHHHHHHHHHTTSTTTS
T ss_pred hCCHHHHHHHHHHHHHHHcCcccc
Confidence 679999999999999999988775
No 20
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=41.63 E-value=1.5e+02 Score=24.60 Aligned_cols=93 Identities=9% Similarity=-0.003 Sum_probs=57.4
Q ss_pred cchhHHHHHHHHHHHhhhhccHHHHHHHH-HHHHHHHhhcCCCCcchhHHHHHHHHHhhhhhhhhhcccCCCCccc----
Q psy4706 64 EDTHTLASLCLARIFENMYYDQARERYLE-SIMEFIKDKLLSPDIESKVRVTVAITCLLLASLVSLEGSAPRSRVR---- 138 (163)
Q Consensus 64 ~nTRm~aSV~LskLYDdm~~D~~Re~F~~-~ce~fik~~~~~~d~eskvrai~~is~LLqGP~DVGn~~l~~~gv~---- 138 (163)
++.|..|+-+|.+|-.+ .+..|..+.+ -+=..+-..+.+++.+.+-.|+.+++.|-..+-+.-..++.. |++
T Consensus 132 ~~v~~~A~~~L~~l~~~--~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~-g~l~~Ll 208 (528)
T 4b8j_A 132 PQLQFEAAWALTNIASG--TSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLAN-GALLPLL 208 (528)
T ss_dssp HHHHHHHHHHHHHHHTS--CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHT-TCHHHHH
T ss_pred HHHHHHHHHHHHHHhCC--CHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHC-CcHHHHH
Confidence 57788999999998763 2233433333 123344456667888888899999999976644433333322 222
Q ss_pred --cCCchhHHHHHHHHHHHHHHh
Q psy4706 139 --FPPRANFVLNRRTCQVYLIVA 159 (163)
Q Consensus 139 --~~~s~~~~~q~va~ea~i~aa 159 (163)
+..+.+...++.|+.+|-.-+
T Consensus 209 ~lL~~~~~~~v~~~a~~~L~~L~ 231 (528)
T 4b8j_A 209 AQLNEHTKLSMLRNATWTLSNFC 231 (528)
T ss_dssp HTCCTTCCHHHHHHHHHHHHHHH
T ss_pred HHHhcCCCHHHHHHHHHHHHHHH
Confidence 224556667777888776544
No 21
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=41.46 E-value=1.1e+02 Score=25.56 Aligned_cols=95 Identities=11% Similarity=0.068 Sum_probs=55.3
Q ss_pred CcchhHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHhhhhhhhhhcccCCCCccc----
Q psy4706 63 TEDTHTLASLCLARIFENMYYDQARERYLESIMEFIKDKLLSPDIESKVRVTVAITCLLLASLVSLEGSAPRSRVR---- 138 (163)
Q Consensus 63 T~nTRm~aSV~LskLYDdm~~D~~Re~F~~~ce~fik~~~~~~d~eskvrai~~is~LLqGP~DVGn~~l~~~gv~---- 138 (163)
.++.|..|.-+|..|-.+-.-..... +...+=..+...+.+++.+....|+.+|+.|..++-+.-..++.. |++
T Consensus 228 ~~~v~~~a~~~L~~L~~~~~~~~~~~-~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~-~~v~~Lv 305 (530)
T 1wa5_B 228 KPSLIRTATWTLSNLCRGKKPQPDWS-VVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDV-RIPKRLV 305 (530)
T ss_dssp CHHHHHHHHHHHHHHHCCSSSCCCHH-HHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHT-TCHHHHH
T ss_pred CHHHHHHHHHHHHHHhCCCCCCCcHH-HHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhc-CcHHHHH
Confidence 34668888888998875421111111 122233344456667788888889999999998865544333332 322
Q ss_pred -cCCchhHHHHHHHHHHHHHHh
Q psy4706 139 -FPPRANFVLNRRTCQVYLIVA 159 (163)
Q Consensus 139 -~~~s~~~~~q~va~ea~i~aa 159 (163)
+..+.+..-+.-|+.++-+.+
T Consensus 306 ~lL~~~~~~v~~~a~~~L~~l~ 327 (530)
T 1wa5_B 306 ELLSHESTLVQTPALRAVGNIV 327 (530)
T ss_dssp HGGGCSCHHHHHHHHHHHHHHT
T ss_pred HHHCCCChhhHHHHHHHHHHHH
Confidence 223445555666777665544
No 22
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=40.13 E-value=31 Score=28.83 Aligned_cols=97 Identities=10% Similarity=0.006 Sum_probs=57.8
Q ss_pred cchhHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHhhcCCCC-cchhHHHHHHHHHhhhhhhhhhcccCCCCccc----
Q psy4706 64 EDTHTLASLCLARIFENMYYDQARERYLESIMEFIKDKLLSPD-IESKVRVTVAITCLLLASLVSLEGSAPRSRVR---- 138 (163)
Q Consensus 64 ~nTRm~aSV~LskLYDdm~~D~~Re~F~~~ce~fik~~~~~~d-~eskvrai~~is~LLqGP~DVGn~~l~~~gv~---- 138 (163)
++.|..|+..|.++-..-..+..+.....-+=..+-+.+..++ .+.+..|+.+++.|..|..+.-..++...++-
T Consensus 88 ~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ 167 (528)
T 4b8j_A 88 NNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVK 167 (528)
T ss_dssp HHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHH
Confidence 5678888888888754322222222222222333344455555 78899999999999988655544444332221
Q ss_pred cCCchhHHHHHHHHHHHHHHhc
Q psy4706 139 FPPRANFVLNRRTCQVYLIVAG 160 (163)
Q Consensus 139 ~~~s~~~~~q~va~ea~i~aa~ 160 (163)
+..+.+...|..|+.+|-..++
T Consensus 168 lL~~~~~~v~~~a~~aL~~l~~ 189 (528)
T 4b8j_A 168 LLGSSSDDVREQAVWALGNVAG 189 (528)
T ss_dssp HTTCSCHHHHHHHHHHHHHHHH
T ss_pred HhcCCCHHHHHHHHHHHHHHhC
Confidence 3355666778888888866553
No 23
>2foz_A ADP-ribosylhydrolase like 2; all alpha-helical, metal binding; 1.60A {Homo sapiens} PDB: 2fp0_A 2g4k_A 2qty_A
Probab=33.15 E-value=74 Score=25.72 Aligned_cols=37 Identities=16% Similarity=0.263 Sum_probs=23.4
Q ss_pred ccCCcchhHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHhhc
Q psy4706 60 MEITEDTHTLASLCLARIFENMYYDQARERYLESIMEFIKDKL 102 (163)
Q Consensus 60 lpvT~nTRm~aSV~LskLYDdm~~D~~Re~F~~~ce~fik~~~ 102 (163)
-++|+.|.|..+++-+ |-+.=.+|.+. .++.|++.++
T Consensus 57 g~~TDDT~mtl~~a~s-L~~~~~~d~~~-----~~~~~~~~~~ 93 (347)
T 2foz_A 57 LYYTDDTAMARALVQS-LLAKEAFDEVD-----MAHRFAQEYK 93 (347)
T ss_dssp BCCCHHHHHHHHHHHH-HHHHTSCCHHH-----HHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHH-HHHcCCCCHHH-----HHHHHHHHHh
Confidence 4799999999988443 44444577652 3444555443
No 24
>2ksc_A Cyanoglobin; hemeprotein, 2/2 hemoglobin, GLBN, TRHBN, unknown function; HET: HEB; NMR {Synechococcus SP}
Probab=31.56 E-value=63 Score=22.72 Aligned_cols=46 Identities=11% Similarity=0.178 Sum_probs=30.7
Q ss_pred HHHHHHHHhhhhccHHHHHHHHHHHHHHHhhcCCCCc-chhHHHHHHHHHhhhhhhhh
Q psy4706 71 SLCLARIFENMYYDQARERYLESIMEFIKDKLLSPDI-ESKVRVTVAITCLLLASLVS 127 (163)
Q Consensus 71 SV~LskLYDdm~~D~~Re~F~~~ce~fik~~~~~~d~-eskvrai~~is~LLqGP~DV 127 (163)
.-+..++|+.+.-|+. |+..|...|+ +.+-+....++.++.||..=
T Consensus 14 ~~lv~~FY~~v~~Dp~-----------l~~~F~~~d~~~~~~~l~~Fl~~~~GGp~~Y 60 (123)
T 2ksc_A 14 DLAVEKFYGKVLADER-----------VNRFFVNTDMAKQKQHQKDFMTYAFGGTDRF 60 (123)
T ss_dssp HHHHHHHHHHHHHCHH-----------HHTGGGSSCHHHHHHHHHHHHHHHTTCTTSC
T ss_pred HHHHHHHHHHHHcCHH-----------HHHhcCCCCHHHHHHHHHHHHHHHhCCCCCC
Confidence 3345566666655543 5666666677 45667788899999999753
No 25
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=30.62 E-value=71 Score=21.93 Aligned_cols=42 Identities=14% Similarity=0.066 Sum_probs=26.7
Q ss_pred CcchhHHHHHHHHHhhcccccchHHHHHHH--HhHHHHHHhhhc
Q psy4706 9 LLSGRDAIIQLITRNVHYKAINWAERLIEI--RGLQRLMEVASE 50 (163)
Q Consensus 9 Sg~gRD~~i~LL~KnVp~~~~~~~~~~~~~--~GLkrLLeVa~~ 50 (163)
|..-++.+++++.|-|-...-+.-..-+.. .|+.-|+...-.
T Consensus 12 ~~~~~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~alk~ 55 (83)
T 2w2u_A 12 QVMLEEMARKYAINAVKADKEGNAEEAITNYKKAIEVLAQLVSL 55 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Confidence 455688999999999866433333333333 688777776543
No 26
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=29.52 E-value=39 Score=28.41 Aligned_cols=98 Identities=8% Similarity=-0.012 Sum_probs=55.6
Q ss_pred CcchhHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHhhcCCC-CcchhHHHHHHHHHhhhhhhhhhcccCCCCccc---
Q psy4706 63 TEDTHTLASLCLARIFENMYYDQARERYLESIMEFIKDKLLSP-DIESKVRVTVAITCLLLASLVSLEGSAPRSRVR--- 138 (163)
Q Consensus 63 T~nTRm~aSV~LskLYDdm~~D~~Re~F~~~ce~fik~~~~~~-d~eskvrai~~is~LLqGP~DVGn~~l~~~gv~--- 138 (163)
.++.|..|..+|.++...-..++-+.....-+=..+-+.+.++ +.+.+..|+.+++.+..|..+....++...++-
T Consensus 100 ~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv 179 (530)
T 1wa5_B 100 DMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFI 179 (530)
T ss_dssp SHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHH
T ss_pred CHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHH
Confidence 3567888888888885432111111222212223333445554 778889999999999887544433333222221
Q ss_pred -cCCchhHHHHHHHHHHHHHHhc
Q psy4706 139 -FPPRANFVLNRRTCQVYLIVAG 160 (163)
Q Consensus 139 -~~~s~~~~~q~va~ea~i~aa~ 160 (163)
+..+.+...+..|+.+|-.-++
T Consensus 180 ~lL~~~~~~vr~~A~~aL~~l~~ 202 (530)
T 1wa5_B 180 QLLYTGSVEVKEQAIWALGNVAG 202 (530)
T ss_dssp HHHHHCCHHHHHHHHHHHHHHHT
T ss_pred HHHcCCCHHHHHHHHHHHHHHhC
Confidence 2245556667778888776654
No 27
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=29.06 E-value=49 Score=29.72 Aligned_cols=96 Identities=8% Similarity=0.047 Sum_probs=57.3
Q ss_pred CcchhHHHHHHHHHHHhhhhccHHHHH----HHHHHHHHHHhhcCCCCcchhHHHHHHHHHhhhhhhh-hhcccC-CCCc
Q psy4706 63 TEDTHTLASLCLARIFENMYYDQARER----YLESIMEFIKDKLLSPDIESKVRVTVAITCLLLASLV-SLEGSA-PRSR 136 (163)
Q Consensus 63 T~nTRm~aSV~LskLYDdm~~D~~Re~----F~~~ce~fik~~~~~~d~eskvrai~~is~LLqGP~D-VGn~~l-~~~g 136 (163)
.++.|..+..+|.+|.++....-.++. +...+..+++ .|.+++.+.+..|+.+++.+..+..+ ....+- -.+.
T Consensus 141 ~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~-~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~ 219 (852)
T 4fdd_A 141 DYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQ-FFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIEN 219 (852)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTT-TTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHH-HhcCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 346788888899999998865433322 4555555554 45677778888889998877754211 100000 0011
Q ss_pred cc-cCCchhHHHHHHHHHHHHHHh
Q psy4706 137 VR-FPPRANFVLNRRTCQVYLIVA 159 (163)
Q Consensus 137 v~-~~~s~~~~~q~va~ea~i~aa 159 (163)
+. ...+++...++.||+++...+
T Consensus 220 l~~~~~d~~~~vr~~a~~~L~~l~ 243 (852)
T 4fdd_A 220 LFALAGDEEPEVRKNVCRALVMLL 243 (852)
T ss_dssp HHHHHTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHH
Confidence 11 235566667778888886554
No 28
>1s69_A Cyanoglobin, hemoglobin, HB; on 2 helical fold, heme, iron, cyanoba oxygen binding, hexacoordinate, truncated, oxygen storage-T complex; HET: FLC HEM; 1.68A {Synechocystis SP} SCOP: a.1.1.1 PDB: 1s6a_A* 1mwb_A* 1rtx_A* 2hz1_A* 2hz3_A* 2hz2_A*
Probab=28.97 E-value=56 Score=22.86 Aligned_cols=46 Identities=15% Similarity=0.224 Sum_probs=28.1
Q ss_pred HHHHHHHHhhhhccHHHHHHHHHHHHHHHhhcCCCCcc-hhHHHHHHHHHhhhhhhhh
Q psy4706 71 SLCLARIFENMYYDQARERYLESIMEFIKDKLLSPDIE-SKVRVTVAITCLLLASLVS 127 (163)
Q Consensus 71 SV~LskLYDdm~~D~~Re~F~~~ce~fik~~~~~~d~e-skvrai~~is~LLqGP~DV 127 (163)
.-+..++|+.|.-|++ |+..|...|++ .+-+....++..+.||-.-
T Consensus 15 ~~lv~~FY~~v~~dp~-----------l~~~F~~~d~~~~~~~l~~fl~~~~ggp~~y 61 (124)
T 1s69_A 15 DLAVDKFYERVLQDDR-----------IKHFFADVDMAKQRAHQKAFLTYAFGGTDKY 61 (124)
T ss_dssp HHHHHHHHHHHHTCTT-----------TGGGGTTCCHHHHHHHHHHHHHHHTTSSSCC
T ss_pred HHHHHHHHHHHHcChH-----------HHHHhCCCCHHHHHHHHHHHHHHHhCCCCCC
Confidence 3345556666665554 34445445664 4455677899999998643
No 29
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=28.61 E-value=2.2e+02 Score=22.50 Aligned_cols=94 Identities=9% Similarity=-0.001 Sum_probs=56.2
Q ss_pred CcchhHHHHHHHHHHHhhhhccHHHHHH-HHHHHHHHHhhcCCCCcchhHHHHHHHHHhhhhhhhhhcccCCCCccc---
Q psy4706 63 TEDTHTLASLCLARIFENMYYDQARERY-LESIMEFIKDKLLSPDIESKVRVTVAITCLLLASLVSLEGSAPRSRVR--- 138 (163)
Q Consensus 63 T~nTRm~aSV~LskLYDdm~~D~~Re~F-~~~ce~fik~~~~~~d~eskvrai~~is~LLqGP~DVGn~~l~~~gv~--- 138 (163)
.++.|..|+-+|..|...- +..+..+ ..-+=..+...+.+++.+.+..|+.+++.|.....+.-..++.. |++
T Consensus 78 ~~~v~~~a~~~L~~l~~~~--~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~-~~i~~L 154 (450)
T 2jdq_A 78 NCTLQFESAWVLTNIASGN--SLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDC-NILPPL 154 (450)
T ss_dssp CHHHHHHHHHHHHHHHSSC--HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHT-TCHHHH
T ss_pred CHHHHHHHHHHHHHHhcCC--HHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHC-CCHHHH
Confidence 3567888888899887521 1112222 12233444555667788888899999999887654333323222 222
Q ss_pred ---cCCchhHHHHHHHHHHHHHHh
Q psy4706 139 ---FPPRANFVLNRRTCQVYLIVA 159 (163)
Q Consensus 139 ---~~~s~~~~~q~va~ea~i~aa 159 (163)
+..+.+...++.|+.++-..+
T Consensus 155 ~~~l~~~~~~~v~~~a~~~L~~l~ 178 (450)
T 2jdq_A 155 LQLFSKQNRLTMTRNAVWALSNLC 178 (450)
T ss_dssp HHHTTSCCCHHHHHHHHHHHHHHH
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHh
Confidence 222356667888888887655
No 30
>3itu_A CGMP-dependent 3',5'-cyclic phosphodiesterase; Zn-binding, all-alpha-helical, alternative splicing, hydrolase, membrane, polymorphism; HET: IBM; 1.58A {Homo sapiens} PDB: 3itm_A* 1z1l_A
Probab=28.26 E-value=1.2e+02 Score=25.95 Aligned_cols=52 Identities=12% Similarity=0.221 Sum_probs=33.6
Q ss_pred HHHHHHhhcCCCCcchhHHHHHHHHHhhhhhhhhhcccCCCCccccCCchhHHHHHHHHHHHHHHhc
Q psy4706 94 IMEFIKDKLLSPDIESKVRVTVAITCLLLASLVSLEGSAPRSRVRFPPRANFVLNRRTCQVYLIVAG 160 (163)
Q Consensus 94 ce~fik~~~~~~d~eskvrai~~is~LLqGP~DVGn~~l~~~gv~~~~s~~~~~q~va~ea~i~aa~ 160 (163)
+.+.|.+....-||...-+-+.-+..+.++.+|. .+..+.....+.+||+|+
T Consensus 183 ~r~~ii~~ILATDm~~Hf~~~~~~~~~~~~~~~~---------------~~~~~r~lll~~lik~aD 234 (345)
T 3itu_A 183 MLDLMRDIILATDLAHHLRIFKDLQKMAEVGYDR---------------NNKQHHRLLLCLLMTSCD 234 (345)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHHHHHHCCCT---------------TCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHHhcCCCc---------------ccHHHHHHHHHHHHHHHh
Confidence 4445666666678888777777777666554442 234456667778888885
No 31
>2qrw_A Hemoglobin-like protein HBO; truncated hemoglobin fold, alpha helix, heme, hydroxylation, iron, membrane, metal-binding; HET: HEM; 1.93A {Mycobacterium tuberculosis} PDB: 1ngk_A*
Probab=27.41 E-value=82 Score=22.20 Aligned_cols=47 Identities=9% Similarity=0.137 Sum_probs=32.7
Q ss_pred HHHHHHHHHhhhhccHHHHHHHHHHHHHHHhhcCCCCcch-hHHHHHHHHHhhhhhhhh
Q psy4706 70 ASLCLARIFENMYYDQARERYLESIMEFIKDKLLSPDIES-KVRVTVAITCLLLASLVS 127 (163)
Q Consensus 70 aSV~LskLYDdm~~D~~Re~F~~~ce~fik~~~~~~d~es-kvrai~~is~LLqGP~DV 127 (163)
+.-+..++|+.+.-|+. |+..|...|++. +-+....++..+.||..=
T Consensus 15 i~~lv~~FY~~v~~dp~-----------l~~~F~~~d~~~~~~~l~~fl~~~~GGp~~Y 62 (128)
T 2qrw_A 15 FDAIVSRFYAQVAEDEV-----------LRRVYPEDDLAGAEERLRMFLEQYWGGPRTY 62 (128)
T ss_dssp HHHHHHHHHHHHHHCHH-----------HHHHSCCSCCHHHHHHHHHHHHHHTTSCCHH
T ss_pred HHHHHHHHHHHHHhCHH-----------HHHhccCCCHHHHHHHHHHHHHHHhCCCccc
Confidence 34456777777777764 555566567764 557788899999999753
No 32
>3f7c_A Protein of unknown function (DUF416); structural genomics, joint center for structural genomics, J protein structure initiative; HET: CIT; 2.00A {Marinobacter aquaeolei VT8}
Probab=26.95 E-value=51 Score=26.68 Aligned_cols=57 Identities=12% Similarity=0.125 Sum_probs=39.3
Q ss_pred hHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHhhcCCCCcc--------hhHHHHHHHHHhhhhhhh
Q psy4706 67 HTLASLCLARIFENMYYDQARERYLESIMEFIKDKLLSPDIE--------SKVRVTVAITCLLLASLV 126 (163)
Q Consensus 67 Rm~aSV~LskLYDdm~~D~~Re~F~~~ce~fik~~~~~~d~e--------skvrai~~is~LLqGP~D 126 (163)
....--+|+-+|+-|+-.+.+-+|-.+.|.+ -+. .||.+ -=+-|+++++++|++=.|
T Consensus 46 ~~~~r~~LdlvWe~L~~k~~kinfe~qLekl-E~~--~Pd~~dfd~yGvyPA~DAc~ALs~ll~~~~~ 110 (200)
T 3f7c_A 46 GGKMRQLLDLAWDMLQKDVADAAIPQLLSKL-ETL--CPNVDEYDAYGVYPAFDFCQLLEQALLNRLN 110 (200)
T ss_dssp HHHHHHHHHHHHHHTTSCCCGGGHHHHHHHH-HHH--CCCGGGCCSTTHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhccccccCHHHHHHHH-Hhc--CCChhhcccccchHHHHHHHHHHHHHHHHHc
Confidence 3344456999999999888887777666542 121 23332 267899999999998554
No 33
>2gkm_A TRHBN, hemoglobin-like protein HBN, flavohemoglobin; truncated hemoglobin, mutant, oxygen storage/transport complex; HET: HEM; 1.73A {Mycobacterium tuberculosis} PDB: 1idr_A* 1rte_A* 1s56_A* 1s61_A* 2gl3_A* 2gln_A* 2gkn_A*
Probab=26.66 E-value=58 Score=23.48 Aligned_cols=44 Identities=9% Similarity=0.098 Sum_probs=29.1
Q ss_pred HHHHHHHhhhhccHHHHHHHHHHHHHHHhhcCCCCcch-hHHHHHHHHHhhhhhhh
Q psy4706 72 LCLARIFENMYYDQARERYLESIMEFIKDKLLSPDIES-KVRVTVAITCLLLASLV 126 (163)
Q Consensus 72 V~LskLYDdm~~D~~Re~F~~~ce~fik~~~~~~d~es-kvrai~~is~LLqGP~D 126 (163)
-+..++|+.+.-|+. |+..|...|++. +-+....++..+.||..
T Consensus 27 ~lv~~FY~~v~~Dp~-----------l~~~F~~~d~~~~~~~l~~Fl~~~~GGp~~ 71 (136)
T 2gkm_A 27 VVVEDFFVRVLADDQ-----------LSAFFSGTNMSRLKGKQVEFFAAALGGPEP 71 (136)
T ss_dssp HHHHHHHHHHHHCTT-----------TGGGGTTSCHHHHHHHHHHHHHHHTTCSSC
T ss_pred HHHHHHHHHHHcCHH-----------HHHhcCCCCHHHHHHHHHHHHHHHHCCCCC
Confidence 344555555555543 555566557775 77788899999999964
No 34
>1utr_A Uteroglobin; clara cell 17 kDa protein (CC10), phospholipase A2 inhibitor, clara cell phospholipid-binding protein, progesterone binding; HET: PCB; NMR {Rattus norvegicus} SCOP: a.101.1.1
Probab=26.50 E-value=29 Score=24.59 Aligned_cols=25 Identities=12% Similarity=0.162 Sum_probs=21.3
Q ss_pred cCCcchhHHHHHHHHHHHhhhhccH
Q psy4706 61 EITEDTHTLASLCLARIFENMYYDQ 85 (163)
Q Consensus 61 pvT~nTRm~aSV~LskLYDdm~~D~ 85 (163)
.+|++||.++..+|.+||.+-.|..
T Consensus 68 ~ls~e~r~~i~~ll~~I~~S~~C~~ 92 (96)
T 1utr_A 68 TLPQETRINIVKLTEKILTSPLCEQ 92 (96)
T ss_dssp TSCSHHHHHHHHHHHHHTSCCCC--
T ss_pred hCCHHHHHHHHHHHHHHHcCccccc
Confidence 6799999999999999999988764
No 35
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=25.89 E-value=1.5e+02 Score=20.00 Aligned_cols=38 Identities=13% Similarity=0.066 Sum_probs=23.8
Q ss_pred hhHHHHHHHHHhhcccccchHHHHHHH--HhHHHHHHhhh
Q psy4706 12 GRDAIIQLITRNVHYKAINWAERLIEI--RGLQRLMEVAS 49 (163)
Q Consensus 12 gRD~~i~LL~KnVp~~~~~~~~~~~~~--~GLkrLLeVa~ 49 (163)
-.+.+++++.+-|-...-+.-..-+.+ .|+.-|+...-
T Consensus 7 ~~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~~lk 46 (83)
T 2v6y_A 7 LEDMARKYAILAVKADKEGKVEDAITYYKKAIEVLSQIIV 46 (83)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999866333323333333 67777777654
No 36
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=24.62 E-value=1.3e+02 Score=25.27 Aligned_cols=63 Identities=14% Similarity=0.067 Sum_probs=45.3
Q ss_pred HHhhcCCCCcchhHHHHHHHHHhhhhhhhhhcccCCCCccccCCchhHHHHHHHHHHHHHHhcc
Q psy4706 98 IKDKLLSPDIESKVRVTVAITCLLLASLVSLEGSAPRSRVRFPPRANFVLNRRTCQVYLIVAGE 161 (163)
Q Consensus 98 ik~~~~~~d~eskvrai~~is~LLqGP~DVGn~~l~~~gv~~~~s~~~~~q~va~ea~i~aa~k 161 (163)
|-+.+.++|-..|+-|.+.|+++=---+.--+++|++=-- +-...|++----|||+|.|.|.+
T Consensus 149 i~smltskd~~Dkl~aLnFi~alGen~~~yv~PfLprL~a-LL~D~deiVRaSaVEtL~~lA~~ 211 (253)
T 2db0_A 149 FMSMLSSKNREDKLTALNFIEAMGENSFKYVNPFLPRIIN-LLHDGDEIVRASAVEALVHLATL 211 (253)
T ss_dssp HHHHTSCSSHHHHHHHHHHHHTCCTTTHHHHGGGHHHHHG-GGGCSSHHHHHHHHHHHHHHHTS
T ss_pred HHHHhcCCChHHHHHHHHHHHHHhccCccccCcchHHHHH-HHcCcchhhhHHHHHHHHHHHHc
Confidence 3455678999999999999999865555555555443211 33567777778899999999964
No 37
>3v93_A Cyclic nucleotide specific phosphodiesterase; parasite, phosphodiesterases,, hydrolase; 2.00A {Trypanosoma cruzi} PDB: 3v94_A*
Probab=24.13 E-value=2e+02 Score=24.49 Aligned_cols=74 Identities=5% Similarity=-0.008 Sum_probs=45.1
Q ss_pred hHHHHHHHHHHHhhhhc-------cHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHhhh-hhhhhhcccCCCCccc
Q psy4706 67 HTLASLCLARIFENMYY-------DQARERYLESIMEFIKDKLLSPDIESKVRVTVAITCLLL-ASLVSLEGSAPRSRVR 138 (163)
Q Consensus 67 Rm~aSV~LskLYDdm~~-------D~~Re~F~~~ce~fik~~~~~~d~eskvrai~~is~LLq-GP~DVGn~~l~~~gv~ 138 (163)
+.|+|++..=| .+=.| +.++..|++ .|.+....-||...-+-+..+-.+++ |.+|
T Consensus 171 nhH~a~~f~lL-~~~~~nif~~l~~~~~~~~r~----~ii~~ILATDM~~Hf~~l~~~~~~~~~~~~d------------ 233 (345)
T 3v93_A 171 QLHTATAFELL-NVTEFDFTSSMDNASFLEFKN----IVSHLIGHTDMSLHSETVAKHGAKLSAGGFD------------ 233 (345)
T ss_dssp HHHHHHHHHHH-TSTTTCTTTTSCHHHHHHHHH----HHHHHHHTTCGGGHHHHHHHHHHHHHTTCCC------------
T ss_pred HHHHHHHHHHh-cccccChhccCCHHHHHHHHH----HHHHHHHhccHHHHHHHHHHHHHHHhcCCCC------------
Confidence 56777655433 22221 233444444 55555566789888888877777664 3333
Q ss_pred cCCchhHHHHHHHHHHHHHHhc
Q psy4706 139 FPPRANFVLNRRTCQVYLIVAG 160 (163)
Q Consensus 139 ~~~s~~~~~q~va~ea~i~aa~ 160 (163)
..+..+....++.+||+|+
T Consensus 234 ---~~~~~~r~lll~~lik~AD 252 (345)
T 3v93_A 234 ---CTCKEDRLEALSLLLHAAD 252 (345)
T ss_dssp ---TTSHHHHHHHHHHHHHHHH
T ss_pred ---CCchhHHHHHHHHHHHHHH
Confidence 2344567778899999986
No 38
>1f45_B Interleukin-12 alpha chain; cytokine, cytokine-cytokine complex; HET: NAG MAN; 2.80A {Homo sapiens} SCOP: a.26.1.1 PDB: 3hmx_B*
Probab=22.37 E-value=36 Score=27.90 Aligned_cols=23 Identities=26% Similarity=0.550 Sum_probs=15.3
Q ss_pred CCcchhHHHHHHHHHHHhhhhcc
Q psy4706 62 ITEDTHTLASLCLARIFENMYYD 84 (163)
Q Consensus 62 vT~nTRm~aSV~LskLYDdm~~D 84 (163)
.+..|-..-.-||..||+||++=
T Consensus 90 ~~~~tsf~~t~CL~sIyEDLk~Y 112 (197)
T 1f45_B 90 ASRKTSFMMALCLSSIYEDLKMY 112 (197)
T ss_dssp -----CHHHHHHHHHHHHHHHHH
T ss_pred cccchhhHHHHHHHHHHHHHHHH
Confidence 44555777888999999999753
No 39
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=21.95 E-value=31 Score=25.58 Aligned_cols=23 Identities=22% Similarity=0.209 Sum_probs=18.3
Q ss_pred hHHHHHHHHhHHHHHHhhhcccc
Q psy4706 31 WAERLIEIRGLQRLMEVASELQE 53 (163)
Q Consensus 31 ~~~~~~~~~GLkrLLeVa~~~~e 53 (163)
|.+..-++.|||||+..+.++++
T Consensus 92 ~~E~~~Wm~GlKrLI~~a~~~~~ 114 (118)
T 2yru_A 92 VTEVSQWMVGVKRLIAEKKSLSG 114 (118)
T ss_dssp HHHHTTTHHHHHHHHHHHHHHHS
T ss_pred HHHHHhHHHHHHHHHHHHHHcCC
Confidence 55555566899999999988876
No 40
>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens} SCOP: a.21.1.0
Probab=21.90 E-value=1.2e+02 Score=18.85 Aligned_cols=30 Identities=10% Similarity=0.181 Sum_probs=24.1
Q ss_pred hHHHHHHHHHHHhhhhccHHHHHHHHHHHHH
Q psy4706 67 HTLASLCLARIFENMYYDQARERYLESIMEF 97 (163)
Q Consensus 67 Rm~aSV~LskLYDdm~~D~~Re~F~~~ce~f 97 (163)
...+|-.|+..|.+| .|.+|..|.+..+.-
T Consensus 30 ~~eisk~lg~~Wk~l-s~~eK~~y~~~A~~~ 59 (71)
T 4a3n_A 30 NAELSKMLGKSWKAL-TLAEKRPFVEEAERL 59 (71)
T ss_dssp HHHHHHHHHHHHHHS-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-CHHHHHHHHHHHHHH
Confidence 345777899999998 588899999887763
No 41
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=21.58 E-value=96 Score=28.31 Aligned_cols=95 Identities=7% Similarity=-0.100 Sum_probs=0.0
Q ss_pred CcchhHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHhhhhhhhhhcccCCCCccc----
Q psy4706 63 TEDTHTLASLCLARIFENMYYDQARERYLESIMEFIKDKLLSPDIESKVRVTVAITCLLLASLVSLEGSAPRSRVR---- 138 (163)
Q Consensus 63 T~nTRm~aSV~LskLYDdm~~D~~Re~F~~~ce~fik~~~~~~d~eskvrai~~is~LLqGP~DVGn~~l~~~gv~---- 138 (163)
.+..|..|+.+|.+|..+-.....=......+...++-+-.+.+.+.+..|+.++..|-..+-- ...+...|++
T Consensus 163 d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~--~~~i~~~g~I~~Lv 240 (780)
T 2z6g_A 163 DQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREG--LLAIFKSGGIPALV 240 (780)
T ss_dssp CHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHH--HHHHHHTTHHHHHH
T ss_pred CHHHHHHHHHHHHHHhCCChhHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchh--HHHHHHcCCHHHHH
Q ss_pred -cCCchhHHHHHHHHHHHHHHh
Q psy4706 139 -FPPRANFVLNRRTCQVYLIVA 159 (163)
Q Consensus 139 -~~~s~~~~~q~va~ea~i~aa 159 (163)
+..+.+..-|..|+.+|.+.+
T Consensus 241 ~lL~~~~~~v~~~A~~aL~nLa 262 (780)
T 2z6g_A 241 NMLGSPVDSVLFHAITTLHNLL 262 (780)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHh
No 42
>2o1k_A NS28, non-structural glycoprotein NSP4; rotavirus enterotoxin, nonstructural protein, tetramer coiled-coil, virulence, viral protein; 1.67A {Simian rotavirus A} PDB: 2o1j_A 1g1j_A* 1g1i_A* 3miw_B
Probab=21.51 E-value=33 Score=22.74 Aligned_cols=15 Identities=20% Similarity=0.439 Sum_probs=10.9
Q ss_pred HHHHHHhhhhccHHH
Q psy4706 73 CLARIFENMYYDQAR 87 (163)
Q Consensus 73 ~LskLYDdm~~D~~R 87 (163)
+|.+|||.|.+-+..
T Consensus 32 LL~rIyd~L~~~~~~ 46 (52)
T 2o1k_A 32 LLKRIYDKLTVQTTG 46 (52)
T ss_dssp HHHHHHHHHHHC---
T ss_pred HHHHHHHHHccCccc
Confidence 699999999987664
No 43
>3hfw_A Protein ADP-ribosylarginine hydrolase; all alpha-helical, magnesium; HET: ADP; 1.92A {Homo sapiens}
Probab=21.49 E-value=3.1e+02 Score=22.85 Aligned_cols=44 Identities=9% Similarity=-0.032 Sum_probs=24.5
Q ss_pred CcccCCcchhHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHhhc
Q psy4706 58 SSMEITEDTHTLASLCLARIFENMYYDQARERYLESIMEFIKDKL 102 (163)
Q Consensus 58 ~~lpvT~nTRm~aSV~LskLYDdm~~D~~Re~F~~~ce~fik~~~ 102 (163)
..-++|+.|.|..+++-+=+-..-..|.+ +.++..++-|.....
T Consensus 49 g~~~~TDDT~maL~la~sL~~~g~~~d~~-~~~~~~~~~~~~~~~ 92 (357)
T 3hfw_A 49 GRWRVSDDTVMHLATAEALVEAGKAPKLT-QLYYLLAKHYQDCME 92 (357)
T ss_dssp GGCCCCHHHHHHHHHHHHHHHHCSSCBHH-HHHHHHHHHHHHHGG
T ss_pred CCCCcCchHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHHHHHh
Confidence 34688999999999854444321112333 233444555555443
No 44
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=20.68 E-value=1.9e+02 Score=19.17 Aligned_cols=40 Identities=18% Similarity=0.120 Sum_probs=23.8
Q ss_pred cchhHHHHHHHHHhhcccccchHHHHHHH--HhHHHHHHhhh
Q psy4706 10 LSGRDAIIQLITRNVHYKAINWAERLIEI--RGLQRLMEVAS 49 (163)
Q Consensus 10 g~gRD~~i~LL~KnVp~~~~~~~~~~~~~--~GLkrLLeVa~ 49 (163)
+.-.+.+++++.+-|-...-+.-..-+.. .|+.-++.+..
T Consensus 7 ~~~l~~A~~l~~~Av~~D~~g~y~eAl~~Y~~aie~l~~a~k 48 (85)
T 2v6x_A 7 GDFLTKGIELVQKAIDLDTATQYEEAYTAYYNGLDYLMLALK 48 (85)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHH
Confidence 45678899999998855322222222232 57776666653
No 45
>2bmm_A Thermostable hemoglobin from thermobifida fusca; bacterial hemoglobin, thermostable protein, oxygen storage/transport; HET: HEM; 2.48A {Thermobifida fusca}
Probab=20.57 E-value=91 Score=21.68 Aligned_cols=45 Identities=11% Similarity=0.118 Sum_probs=29.2
Q ss_pred HHHHHHHhhhhccHHHHHHHHHHHHHHHhhcCCCCcch-hHHHHHHHHHhhhhhhhh
Q psy4706 72 LCLARIFENMYYDQARERYLESIMEFIKDKLLSPDIES-KVRVTVAITCLLLASLVS 127 (163)
Q Consensus 72 V~LskLYDdm~~D~~Re~F~~~ce~fik~~~~~~d~es-kvrai~~is~LLqGP~DV 127 (163)
-+..++|+.+.-|+. |+..|...|++. +-+....++..+.||..=
T Consensus 15 ~lv~~FY~~v~~dp~-----------l~~~F~~~d~~~~~~~l~~fl~~~~gGp~~Y 60 (123)
T 2bmm_A 15 RLARRFYEGVAADPV-----------LRPMYPEEDLGPAEERLRLFLMQYWGGPRTY 60 (123)
T ss_dssp HHHHHHHHHHHTCTT-----------TGGGSCCSCCHHHHHHHHHHHHHHHTSCCHH
T ss_pred HHHHHHHHHHHhCHH-----------HHHhcCCCCHHHHHHHHHHHHHHHcCCCccc
Confidence 345566666666553 455555456653 457788899999999753
No 46
>1zkr_A Major allergen I polypeptide, fused chain 1, CHAI; CAT allergen, uteroglobin, secretoglobin; 1.64A {Felis catus} SCOP: a.101.1.1 a.101.1.1 PDB: 2ejn_A
Probab=20.35 E-value=44 Score=26.36 Aligned_cols=25 Identities=20% Similarity=0.251 Sum_probs=21.4
Q ss_pred cCCcchhHHHHHHHHHHHhhhhccH
Q psy4706 61 EITEDTHTLASLCLARIFENMYYDQ 85 (163)
Q Consensus 61 pvT~nTRm~aSV~LskLYDdm~~D~ 85 (163)
.+|++||.++..+|.|||.+-.|..
T Consensus 49 ~LS~Etr~nI~klLekI~~S~~C~~ 73 (153)
T 1zkr_A 49 KMTEEDKENALSLLDKIYTSPLCVK 73 (153)
T ss_dssp HCCHHHHHHHHHHHHHHHTSHHHHS
T ss_pred cCCHHHHHHHHHHHHHHHcCcchhh
Confidence 5899999999999999998766653
No 47
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=20.04 E-value=3.7e+02 Score=25.19 Aligned_cols=109 Identities=10% Similarity=0.022 Sum_probs=61.0
Q ss_pred HHHHHHHHHhhcccccchHHHHHHHHhHHHHHHhhhccccccccCccc------CCcchhHHHHHHHHHHHhhhhccHHH
Q psy4706 14 DAIIQLITRNVHYKAINWAERLIEIRGLQRLMEVASELQEYKYESSME------ITEDTHTLASLCLARIFENMYYDQAR 87 (163)
Q Consensus 14 D~~i~LL~KnVp~~~~~~~~~~~~~~GLkrLLeVa~~~~e~~~~~~lp------vT~nTRm~aSV~LskLYDdm~~D~~R 87 (163)
+.++..|+..+-..+....-+...+.+|..|.+.+|....=.++..+| ..+.||..+.-+|..|....... .-
T Consensus 566 ~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g~~~~~~~~~~l~~L~~~l~~e~~r~~~~~al~~i~~~~~~~-~~ 644 (1230)
T 1u6g_C 566 KDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEITRLTTVKALTLIAGSPLKI-DL 644 (1230)
T ss_dssp HHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGGCCTHHHHHHHHHHHHTTSSSHHHHHHHHHHHHTTCSSCC-CC
T ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCchhhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHhCcccc-ch
Confidence 456666666553333333333334478888988877542100121121 24567888877787776543211 11
Q ss_pred HHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHhhhh
Q psy4706 88 ERYLESIMEFIKDKLLSPDIESKVRVTVAITCLLLA 123 (163)
Q Consensus 88 e~F~~~ce~fik~~~~~~d~eskvrai~~is~LLqG 123 (163)
+.|...+-..+.+.+.+++...+..++.+++.+...
T Consensus 645 ~~~~~~i~~~L~~~l~~~~~~~r~~a~~al~~l~~~ 680 (1230)
T 1u6g_C 645 RPVLGEGVPILASFLRKNQRALKLGTLSALDILIKN 680 (1230)
T ss_dssp HHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc
Confidence 344455555666666667777777777777777654
Done!