RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4706
(163 letters)
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin,
tetra-tricopeptide repeat, binding protein required for
myosin function; 2.99A {Drosophila melanogaster}
Length = 810
Score = 113 bits (283), Expect = 6e-30
Identities = 75/113 (66%), Positives = 97/113 (85%)
Query: 11 SGRDAIIQLITRNVHYKAINWAERLIEIRGLQRLMEVASELQEYKYESSMEITEDTHTLA 70
+ RD +I+LITRNVHY A+ WAERL+EIRGL RL++V SEL++YKYES+M+IT + T+A
Sbjct: 165 AARDGVIELITRNVHYTALEWAERLVEIRGLCRLLDVCSELEDYKYESAMDITGSSSTIA 224
Query: 71 SLCLARIFENMYYDQARERYLESIMEFIKDKLLSPDIESKVRVTVAITCLLLA 123
S+CLARI+ENMYYD+A+ R+ + I E+IKDKLL+PD+ESKVRVTVAIT LL
Sbjct: 225 SVCLARIYENMYYDEAKARFTDQIDEYIKDKLLAPDMESKVRVTVAITALLNG 277
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 42.0 bits (98), Expect = 4e-05
Identities = 31/183 (16%), Positives = 66/183 (36%), Gaps = 54/183 (29%)
Query: 8 RLLSGRDAII---QLITRNVHYKAINWAERLIEIRGLQRLMEVAS--------------- 49
+LL D + + + +N + A A+R + + L
Sbjct: 107 KLLQENDTTLVKTKELIKN-YITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGN 165
Query: 50 ------ELQE-YK-YESSME--ITEDTHTLASLCLARIFENMYYDQARERYLESIMEFIK 99
EL++ Y+ Y + I TL+ L + + Q I+E+++
Sbjct: 166 TDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLN-----ILEWLE 220
Query: 100 DKLLSPDIESKVRVTVAITCLLLASLVSLEGSAPRSRVRFPPRANFVLNRRTCQVYLIVA 159
+ +PD + +++ I+C L+ ++ L A++V+ T ++
Sbjct: 221 NPSNTPDKD--YLLSIPISCPLIG-VIQL--------------AHYVV---TAKLLGFTP 260
Query: 160 GEL 162
GEL
Sbjct: 261 GEL 263
Score = 32.7 bits (74), Expect = 0.047
Identities = 30/201 (14%), Positives = 53/201 (26%), Gaps = 84/201 (41%)
Query: 38 IRGLQRLMEVASELQEYKYESSMEITEDTH-------------------TLASLC--LAR 76
I L + ++Q+Y +++ + +L L L +
Sbjct: 341 ISNLTQ-----EQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRK 395
Query: 77 IFENMYYDQAR----ER------------------YLESIMEFIKDKLLSPDIE---SKV 111
DQ+R ER L + I L+ ++ +
Sbjct: 396 AKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDI 455
Query: 112 RVTVAITC----------LLLASLVSLEGSAPRSRVRFPPRANF---------------- 145
++ V T + +V R V++ F
Sbjct: 456 QIPVYDTFDGSDLRVLSGSISERIVDC---IIRLPVKWETTTQFKATHILDFGPGGASGL 512
Query: 146 -VLNRRTCQ---VYLIVAGEL 162
VL R V +IVAG L
Sbjct: 513 GVLTHRNKDGTGVRVIVAGTL 533
Score = 30.8 bits (69), Expect = 0.19
Identities = 27/144 (18%), Positives = 46/144 (31%), Gaps = 47/144 (32%)
Query: 40 GLQRL-MEVASELQEYKYESS---MEITE--DTHTLASL--CLARIFEN------MYYD- 84
G Q M +L Y++S ++ D H + + I N +++
Sbjct: 1625 GSQEQGM--GMDL----YKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGG 1678
Query: 85 ----QARERYLESIMEFIKD-----KLLSPDI------------ESKVRVTVAIT--CLL 121
+ RE Y I E I D + + +I + + T T L
Sbjct: 1679 EKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSAT-QFTQPALT 1737
Query: 122 LASLVSLEGSAPRSRVRFPPRANF 145
L + E +S+ P A F
Sbjct: 1738 LMEKAAFE--DLKSKGLIPADATF 1759
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 34.8 bits (79), Expect = 0.008
Identities = 27/106 (25%), Positives = 43/106 (40%), Gaps = 18/106 (16%)
Query: 25 HYKAINWAERLIEIRGLQ---RLMEVASELQEYKYESSMEITEDTHTLASLCLAR--IFE 79
H K I ER+ R + R +E + +S I +TL L + I +
Sbjct: 480 HLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSIL---NTLQQLKFYKPYICD 536
Query: 80 NMYYDQARERYLESIMEFIKDKLLSPDIESKVRVTVAITCLLLASL 125
N D ER + +I++F+ P IE + + T LL +L
Sbjct: 537 N---DPKYERLVNAILDFL------PKIEENL-ICSKYTDLLRIAL 572
Score = 31.4 bits (70), Expect = 0.12
Identities = 22/120 (18%), Positives = 37/120 (30%), Gaps = 17/120 (14%)
Query: 14 DAIIQLITRNVHYKAINWAERLIEIRGLQRLMEVASELQEYKYESSMEITEDTHTLASLC 73
D II + W + +Q+ +E E+ Y+ M + +
Sbjct: 52 DHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVE---EVLRINYKFLMS------PIKTEQ 102
Query: 74 LARIFENMYYDQARERYLESIMEFIKDKLLSPDIESKVRVTVAITCLL-L--ASLVSLEG 130
Y + R+R F K + K+R LL L A V ++G
Sbjct: 103 RQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLR-----QALLELRPAKNVLIDG 157
>2cly_B ATP synthase D chain, mitochondrial; mitochondrion, ION transport,
CF(0), stator, transport, acetylation, hydrogen ION
transport; 2.8A {Bos taurus} SCOP: f.53.1.1 PDB: 2wss_U*
Length = 160
Score = 29.9 bits (67), Expect = 0.22
Identities = 11/54 (20%), Positives = 20/54 (37%)
Query: 46 EVASELQEYKYESSMEITEDTHTLASLCLARIFENMYYDQARERYLESIMEFIK 99
E E+ +S I E L + F+ M + E + E+ ++ K
Sbjct: 95 EDVKSCAEFLTQSKTRIQEYEKELEKMRNIIPFDQMTIEDLNEVFPETKLDKKK 148
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic
transport, nuclear trafficking, importin- beta, complex;
1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB:
2bku_B 3ea5_B* 3nd2_A
Length = 861
Score = 29.4 bits (65), Expect = 0.64
Identities = 17/115 (14%), Positives = 39/115 (33%), Gaps = 12/115 (10%)
Query: 30 NWAERLIEIRGLQRLMEVASELQEYKYESSM-----EITEDTHTL----ASLCLARIFEN 80
NW R + +M+ ++Q Y + D + C+ RI ++
Sbjct: 382 NWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADS 441
Query: 81 MYYDQARERYLESIMEFIKDKLLSPDIESKVRVTVAITCLLLASLVSLEGSAPRS 135
+ +++L +++ L KV + T + L ++ +P
Sbjct: 442 VAESIDPQQHLPGVVQACLIGLQD---HPKVATNCSWTIINLVEQLAEATPSPIY 493
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.0 bits (61), Expect = 0.98
Identities = 8/35 (22%), Positives = 17/35 (48%), Gaps = 12/35 (34%)
Query: 85 QARERYLESIMEFIKDKLLSPDIES----KVRVTV 115
QA ++ L++ + KL + D S ++ T+
Sbjct: 20 QALKK-LQASL-----KLYADD--SAPALAIKATM 46
>2j91_A Adenylosuccinate lyase; disease mutation, adenylosuccinase, succino
AMP-lyase, purin biosynthesis, adenylosuccinase DEFI
AMP, ADSL, saicar, purine; HET: AMP; 1.8A {Homo sapiens}
PDB: 2vd6_A*
Length = 503
Score = 27.6 bits (62), Expect = 2.0
Identities = 9/38 (23%), Positives = 16/38 (42%), Gaps = 8/38 (21%)
Query: 18 QLITRNVHYKAINW-------AERL-IEIRGLQRLMEV 47
Q TR V + ++ ++ +IR L L E+
Sbjct: 263 QTYTRKVDIEVLSVLASLGASVHKICTDIRLLANLKEM 300
>1yis_A Adenylosuccinate lyase; structural genomics, PSI, P structure
initiative, southeast collaboratory for structura
genomics, secsg; 2.40A {Caenorhabditis elegans}
Length = 478
Score = 27.2 bits (61), Expect = 2.6
Identities = 8/38 (21%), Positives = 16/38 (42%), Gaps = 8/38 (21%)
Query: 18 QLITRNVHYKAINW-------AERL-IEIRGLQRLMEV 47
Q +R + + A+++ +IR LQ E+
Sbjct: 237 QTYSRQQDSQLVFSLSLLGAAAKKVCTDIRVLQAFGEL 274
>3q15_A PSP28, response regulator aspartate phosphatase H;
tetratricopeptide repeat, 3-helix bundle, phosphorelay
signa transduction, phosphatase; 2.19A {Bacillus
subtilis}
Length = 378
Score = 27.1 bits (60), Expect = 2.7
Identities = 10/70 (14%), Positives = 23/70 (32%), Gaps = 5/70 (7%)
Query: 44 LMEVASELQEYK-----YESSMEITEDTHTLASLCLARIFENMYYDQARERYLESIMEFI 98
L + + + E ++ L + +Y + ER + ++ +
Sbjct: 267 LSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYF 326
Query: 99 KDKLLSPDIE 108
+ K L IE
Sbjct: 327 EKKNLHAYIE 336
>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc
finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus
musculus} PDB: 3av5_A* 3av6_A*
Length = 1330
Score = 26.8 bits (58), Expect = 3.9
Identities = 23/147 (15%), Positives = 45/147 (30%), Gaps = 18/147 (12%)
Query: 12 GRDAIIQLITRNVHYKAIN--------WAERLIEIRGLQRLMEVASELQEYKYESSMEIT 63
G +I T Y + + +I + ++E + YE +
Sbjct: 188 GEKVLIGFSTAFAEYILMEPSKEYEPIFGLMQEKIYISKIVVEFLQNNPDAVYEDLINKI 247
Query: 64 EDTHTLASLCLARIFENMYYDQARERYLESIMEFIKDKLLSPDIESKVRVTVAITCLLLA 123
E T +++ + R E L +F+ ++ S D T +
Sbjct: 248 ETTVPPSTINVNR---------FTEDSLLRHAQFVVSQVESYDEAKDDDETPIFLSPCMR 298
Query: 124 SLVSLEGSAPRSRVRFPPRANFVLNRR 150
+L+ L G + R R R +
Sbjct: 299 ALIHLAGVSLGQR-RATRRVMGATKEK 324
>1vj7_A Bifunctional RELA/SPOT; HD domain, alpha beta 2-layer sandwich,
helix bundle, mangan PPG2':3'P, (P)PPGPP, PPGPP; HET:
GDP GPX; 2.10A {Streptococcus dysgalactiae subsp} SCOP:
a.211.1.1 d.218.1.8
Length = 393
Score = 26.4 bits (59), Expect = 5.0
Identities = 9/49 (18%), Positives = 16/49 (32%), Gaps = 9/49 (18%)
Query: 72 LCLARIFENMYYD---------QARERYLESIMEFIKDKLLSPDIESKV 111
L + E +Y + RE ++ I+ IK + V
Sbjct: 190 LAFRYLNETEFYKISHMMNEKRREREALVDDIVTKIKSYTTEQGLFGDV 238
>3hwk_A Methylcitrate synthase; niaid, ssgcid, structural genomics, seattle
structural genomics center for infectious disease,
tubercluosis; 2.30A {Mycobacterium tuberculosis}
Length = 414
Score = 26.0 bits (58), Expect = 6.2
Identities = 8/33 (24%), Positives = 13/33 (39%), Gaps = 2/33 (6%)
Query: 22 RNVHYKAINWAERLIEIRGLQRLMEVASELQEY 54
R K ER+ +R QR +++ L
Sbjct: 311 RVPTMKR--ALERVGTVRDGQRWLDIYQVLAAE 341
>3o8j_A 2-methylcitrate synthase; short chain fatty acids, propionate
metabolism, 2-methylcitr cycle, PRPC or 2-MCS, GLTA or
CS, 2-methy synthase; 2.41A {Salmonella enterica}
Length = 404
Score = 26.0 bits (58), Expect = 6.3
Identities = 8/33 (24%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Query: 22 RNVHYKAINWAERLIEIRGLQRLMEVASELQEY 54
R+ K A++L E G ++ +A L+
Sbjct: 298 RHQVIKR--VAKQLSEEGGSLKMYHIADRLETV 328
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural
genomics medical relev protein structure initiative,
PSI-2; 3.00A {Homo sapiens}
Length = 207
Score = 25.8 bits (56), Expect = 6.3
Identities = 17/83 (20%), Positives = 34/83 (40%), Gaps = 17/83 (20%)
Query: 27 KAINWAERLIEIRGLQRLMEVASELQEYKYESSMEITEDTHTLASLCLARIFENMYYDQA 86
+ + E+L E + E+ S ++ + E + ++ FE +++A
Sbjct: 136 EIMEINEKLAEAESEAAMKEIESIVKAKQKEFTDNVSSA------------FEQDDFEEA 183
Query: 87 RE-----RYLESIMEFIKDKLLS 104
+E RY +I E IK K +
Sbjct: 184 KEILTKMRYFSNIEEKIKLKKIP 206
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear
transport receptor, cell cycle, translation; HET: GNP;
2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A
1f59_A 1o6o_A 1o6p_A
Length = 462
Score = 25.9 bits (56), Expect = 6.6
Identities = 14/94 (14%), Positives = 34/94 (36%), Gaps = 5/94 (5%)
Query: 13 RDAIIQLITRNVHYKAINWAERLIEIRGLQRLMEVASELQEYKYESSMEITEDTHTLASL 72
D I+ + + LQ L+ + ++ + E+ + + A +
Sbjct: 291 MDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGV 350
Query: 73 CLARIFENMYYDQARERYLESIMEFIKDKLLSPD 106
CL + + + ++ FIK+ + +PD
Sbjct: 351 CLMLLATCC-----EDDIVPHVLPFIKEHIKNPD 379
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide
repeat, response regulator helix-turn-HELX binding,
3-helix bundle; 2.30A {Bacillus subtilis}
Length = 383
Score = 25.9 bits (57), Expect = 7.3
Identities = 9/53 (16%), Positives = 23/53 (43%)
Query: 56 YESSMEITEDTHTLASLCLARIFENMYYDQARERYLESIMEFIKDKLLSPDIE 108
+ M ++ + L +++Y E ++ +F++ K+L D+E
Sbjct: 287 HSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLE 339
>3tqg_A 2-methylcitrate synthase; energy metabolism, transferase; 2.30A
{Coxiella burnetii}
Length = 375
Score = 25.5 bits (57), Expect = 8.6
Identities = 7/33 (21%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Query: 22 RNVHYKAINWAERLIEIRGLQRLMEVASELQEY 54
RN K+ WA++L L +++ ++
Sbjct: 269 RNAIIKS--WAQKLAPNAADGYLFDISDAIENT 299
>1a59_A Citrate synthase; cold-activity; HET: COA CIT; 2.09A {Antarctic
bacterium ds2-3r} SCOP: a.103.1.1
Length = 378
Score = 25.6 bits (57), Expect = 9.1
Identities = 4/33 (12%), Positives = 13/33 (39%), Gaps = 2/33 (6%)
Query: 22 RNVHYKAINWAERLIEIRGLQRLMEVASELQEY 54
R K+ + +I+ ++ + + L+
Sbjct: 278 RVPTMKS--ALDAMIKHYDRPEMLGLYNGLEAA 308
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.136 0.380
Gapped
Lambda K H
0.267 0.0727 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,421,166
Number of extensions: 130954
Number of successful extensions: 278
Number of sequences better than 10.0: 1
Number of HSP's gapped: 277
Number of HSP's successfully gapped: 34
Length of query: 163
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 77
Effective length of database: 4,300,587
Effective search space: 331145199
Effective search space used: 331145199
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.2 bits)