RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4706
         (163 letters)



>d2bgca1 a.4.5.4 (A:138-237) Listeriolysin regulatory protein
          PrfA, C-terminal domain {Bacteria (Listeria
          monocytogenes) [TaxId: 1639]}
          Length = 100

 Score = 25.6 bits (56), Expect = 1.4
 Identities = 10/50 (20%), Positives = 23/50 (46%)

Query: 10 LSGRDAIIQLITRNVHYKAINWAERLIEIRGLQRLMEVASELQEYKYESS 59
          ++   A+ ++I++    K I +      ++ L  L   A +L E+ Y + 
Sbjct: 43 IAHSSAVSRIISKLKQEKVIVYKNSCFYVQNLDYLKRYAPKLDEWFYLAC 92


>d1v54g_ f.23.2.1 (G:) Mitochondrial cytochrome c oxidase subunit
           VIa {Cow (Bos taurus) [TaxId: 9913]}
          Length = 84

 Score = 24.7 bits (54), Expect = 2.8
 Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 2/42 (4%)

Query: 110 KVRVTVAITCLLLASLVSLEGSAPRSRVRFPPRANFVLNRRT 151
            +   +A+  + L +L S   S  R R  F P  +  L  RT
Sbjct: 18  FLTFGLALPSVALCTLNSWLHSGHRERPAFIPYHH--LRIRT 57


>d1lwda_ c.77.1.1 (A:) NADP-dependent isocitrate dehydrogenase {Pig
           (Sus scrofa) [TaxId: 9823]}
          Length = 413

 Score = 24.8 bits (53), Expect = 5.8
 Identities = 7/15 (46%), Positives = 12/15 (80%)

Query: 94  IMEFIKDKLLSPDIE 108
           I +FIK+KL+ P ++
Sbjct: 23  IWQFIKEKLILPHVD 37


>d1t0la_ c.77.1.1 (A:) NADP-dependent isocitrate dehydrogenase
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 414

 Score = 24.4 bits (52), Expect = 7.9
 Identities = 8/15 (53%), Positives = 11/15 (73%)

Query: 94  IMEFIKDKLLSPDIE 108
           I E IK+KL+ P +E
Sbjct: 22  IWELIKEKLIFPYVE 36


>d1d8wa_ c.1.15.2 (A:) L-rhamnose isomerase {Escherichia coli
           [TaxId: 562]}
          Length = 416

 Score = 24.3 bits (53), Expect = 9.8
 Identities = 7/31 (22%), Positives = 13/31 (41%), Gaps = 4/31 (12%)

Query: 85  QARERYLESIME----FIKDKLLSPDIESKV 111
             R+R L ++ E     +        +ESK+
Sbjct: 197 APRQRLLAALDEVISEKLNPAHHIDAVESKL 227


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.136    0.380 

Gapped
Lambda     K      H
   0.267   0.0499    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 574,344
Number of extensions: 24362
Number of successful extensions: 66
Number of sequences better than 10.0: 1
Number of HSP's gapped: 66
Number of HSP's successfully gapped: 14
Length of query: 163
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 84
Effective length of database: 1,322,926
Effective search space: 111125784
Effective search space used: 111125784
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.2 bits)