BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4709
(86 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5PQ90|LYRM2_XENLA LYR motif-containing protein 2 OS=Xenopus laevis GN=lyrm2 PE=3
SV=1
Length = 87
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 39/86 (45%), Positives = 60/86 (69%)
Query: 1 MSSKLPKSTLNFRQFLLRAEVLGLYKTFLRTAKEIPDESSRKEMIDWIRSEFKHNKHLSD 60
M S+LP + L +QFL+R +VLGLY+ +R ++IP + R+ + DW R EF+ NK S+
Sbjct: 1 MGSRLPPAALTLKQFLVRQQVLGLYRRIVRAVRQIPGAADRQYLQDWARDEFRRNKGASE 60
Query: 61 ETSIKMMIQYGQRSLKEVESSVSLIK 86
E +I+MMI +GQR L+E+E ++ L K
Sbjct: 61 EIAIRMMISHGQRQLQELERALQLAK 86
>sp|B3DLF3|LYRM2_XENTR LYR motif-containing protein 2 OS=Xenopus tropicalis GN=lyrm2
PE=3 SV=1
Length = 87
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 39/86 (45%), Positives = 62/86 (72%)
Query: 1 MSSKLPKSTLNFRQFLLRAEVLGLYKTFLRTAKEIPDESSRKEMIDWIRSEFKHNKHLSD 60
M S+LP + L +QFL+R +VLGLY+ LR+ ++IPD + ++ M +W R EF+ NK ++
Sbjct: 1 MGSRLPPAALTLKQFLVRQQVLGLYRKILRSVRQIPDAADQRYMQEWAREEFRRNKGATE 60
Query: 61 ETSIKMMIQYGQRSLKEVESSVSLIK 86
E +I+MMI +GQR L+E+E ++ L K
Sbjct: 61 EIAIRMMITHGQRQLQELERALHLAK 86
>sp|B2GV91|LYRM2_RAT LYR motif-containing protein 2 OS=Rattus norvegicus GN=Lyrm2 PE=3
SV=1
Length = 88
Score = 86.3 bits (212), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 40/85 (47%), Positives = 58/85 (68%)
Query: 2 SSKLPKSTLNFRQFLLRAEVLGLYKTFLRTAKEIPDESSRKEMIDWIRSEFKHNKHLSDE 61
+S+LP +TL +QF+ R +VL LY+ LR K+IP +S RK + DW R EFK NK ++E
Sbjct: 3 ASRLPPATLTLKQFMRRQQVLLLYRKILRAIKQIPSDSDRKYLQDWAREEFKRNKSATEE 62
Query: 62 TSIKMMIQYGQRSLKEVESSVSLIK 86
+I+MMI G LKE+E +++L K
Sbjct: 63 DTIRMMITQGNMQLKELERTLALAK 87
>sp|Q5RES3|LYRM2_PONAB LYR motif-containing protein 2 OS=Pongo abelii GN=LYRM2 PE=3 SV=1
Length = 88
Score = 85.5 bits (210), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 38/85 (44%), Positives = 60/85 (70%)
Query: 2 SSKLPKSTLNFRQFLLRAEVLGLYKTFLRTAKEIPDESSRKEMIDWIRSEFKHNKHLSDE 61
+S+LP +TL +QF+ R +VL LY+ L+T +++P++S RK + DW R EFK NK ++E
Sbjct: 3 ASRLPPATLTLKQFVRRQQVLLLYRRILQTIRQVPNDSDRKYLKDWAREEFKRNKSATEE 62
Query: 62 TSIKMMIQYGQRSLKEVESSVSLIK 86
+I+MMI G LKE+E +++L K
Sbjct: 63 DTIRMMITQGNMQLKELEKTLALAK 87
>sp|Q9NU23|LYRM2_HUMAN LYR motif-containing protein 2 OS=Homo sapiens GN=LYRM2 PE=1 SV=1
Length = 88
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 60/85 (70%)
Query: 2 SSKLPKSTLNFRQFLLRAEVLGLYKTFLRTAKEIPDESSRKEMIDWIRSEFKHNKHLSDE 61
+S+LP +TL +QF+ R +VL LY+ L+T +++P++S RK + DW R EF+ NK ++E
Sbjct: 3 ASRLPPATLTLKQFVRRQQVLLLYRRILQTIRQVPNDSDRKYLKDWAREEFRRNKSATEE 62
Query: 62 TSIKMMIQYGQRSLKEVESSVSLIK 86
+I+MMI G LKE+E +++L K
Sbjct: 63 DTIRMMITQGNMQLKELEKTLALAK 87
>sp|Q32LM5|LYRM2_BOVIN LYR motif-containing protein 2 OS=Bos taurus GN=LYRM2 PE=3 SV=1
Length = 88
Score = 82.8 bits (203), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 59/85 (69%)
Query: 2 SSKLPKSTLNFRQFLLRAEVLGLYKTFLRTAKEIPDESSRKEMIDWIRSEFKHNKHLSDE 61
+S+LP +TL +QF+ R +VL LY+ L+ +++P++S RK + DW R EFK NK ++E
Sbjct: 3 TSRLPPATLTLKQFMRRQQVLLLYRRILQAIRQVPNDSDRKYLKDWAREEFKRNKSATEE 62
Query: 62 TSIKMMIQYGQRSLKEVESSVSLIK 86
+I+MMI G LKE+E +++L +
Sbjct: 63 DTIRMMITQGNMQLKELEKTLALAR 87
>sp|B5XFA7|LYRM2_SALSA LYR motif-containing protein 2 OS=Salmo salar GN=lyrm2 PE=3 SV=1
Length = 90
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 56/83 (67%)
Query: 2 SSKLPKSTLNFRQFLLRAEVLGLYKTFLRTAKEIPDESSRKEMIDWIRSEFKHNKHLSDE 61
SS+LP S L +QF+ R +VL LY+ +RT +++PDE RK + DW R EFK NK+ +++
Sbjct: 3 SSRLPASALTLKQFIQRQKVLSLYRNMMRTIRQVPDEGDRKYLRDWARDEFKRNKNSTNQ 62
Query: 62 TSIKMMIQYGQRSLKEVESSVSL 84
+I+MMI E++SS++L
Sbjct: 63 DAIRMMITQANMHHDELQSSLAL 85
>sp|Q8R033|LYRM2_MOUSE LYR motif-containing protein 2 OS=Mus musculus GN=Lyrm2 PE=2 SV=1
Length = 88
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 56/83 (67%)
Query: 2 SSKLPKSTLNFRQFLLRAEVLGLYKTFLRTAKEIPDESSRKEMIDWIRSEFKHNKHLSDE 61
+S+LP + L +QF+ R +VL LY+ LR +++P +S RK + DW R EFK NK ++E
Sbjct: 3 ASRLPPAALTLKQFMRRQQVLLLYRKILRAIRQVPSDSDRKYLQDWAREEFKRNKSATEE 62
Query: 62 TSIKMMIQYGQRSLKEVESSVSL 84
+I+MMI G LKE+E +++L
Sbjct: 63 DTIRMMITQGNMQLKELERTLAL 85
>sp|Q5RIM0|LYRM2_DANRE LYR motif-containing protein 2 OS=Danio rerio GN=lyrm2 PE=3 SV=1
Length = 88
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 53/82 (64%)
Query: 3 SKLPKSTLNFRQFLLRAEVLGLYKTFLRTAKEIPDESSRKEMIDWIRSEFKHNKHLSDET 62
S+LP + L+ +QFL R +VL LY+ RT + +P ES RK + DW R EF+ NK +D+
Sbjct: 4 SRLPPAALSLKQFLQRQKVLCLYRDLQRTIRRVPHESDRKYLRDWARDEFRRNKSNTDQD 63
Query: 63 SIKMMIQYGQRSLKEVESSVSL 84
+I+MMI L+E+ S++L
Sbjct: 64 AIRMMISQAHNHLEELRRSLAL 85
>sp|Q9HD34|LYRM4_HUMAN LYR motif-containing protein 4 OS=Homo sapiens GN=LYRM4 PE=1 SV=1
Length = 91
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 34/67 (50%)
Query: 18 RAEVLGLYKTFLRTAKEIPDESSRKEMIDWIRSEFKHNKHLSDETSIKMMIQYGQRSLKE 77
RA+VL LY+ LR +K + R + IR F+ NK++ D I+ ++ +R L
Sbjct: 6 RAQVLSLYRAMLRESKRFSAYNYRTYAVRRIRDAFRENKNVKDPVEIQTLVNKAKRDLGV 65
Query: 78 VESSVSL 84
+ V +
Sbjct: 66 IRRQVHI 72
>sp|Q0VCG0|LYRM4_BOVIN LYR motif-containing protein 4 OS=Bos taurus GN=LYRM4 PE=3 SV=1
Length = 91
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 34/67 (50%)
Query: 18 RAEVLGLYKTFLRTAKEIPDESSRKEMIDWIRSEFKHNKHLSDETSIKMMIQYGQRSLKE 77
RA+VL LY+ LR +K + R I IR F+ NK++ D I+ ++ +R L
Sbjct: 6 RAQVLDLYRAMLRESKRFGAYNYRTYAIRRIRDAFRENKNVKDPVEIQALVNKAKRDLGI 65
Query: 78 VESSVSL 84
+ V +
Sbjct: 66 IRRQVHI 72
>sp|Q8K215|LYRM4_MOUSE LYR motif-containing protein 4 OS=Mus musculus GN=Lyrm4 PE=2 SV=1
Length = 91
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 35/67 (52%)
Query: 18 RAEVLGLYKTFLRTAKEIPDESSRKEMIDWIRSEFKHNKHLSDETSIKMMIQYGQRSLKE 77
RA+VL LY+ +R +K + R + IR F+ NK++ D I+ ++ +R L+
Sbjct: 6 RAQVLDLYRAMMRESKHFSAYNYRMYAVRRIRDAFRENKNVKDPVEIQALVNKAKRDLEI 65
Query: 78 VESSVSL 84
+ V +
Sbjct: 66 IRRQVHI 72
>sp|B8JLQ0|LYRM4_DANRE LYR motif-containing protein 4 OS=Danio rerio GN=lyrm4 PE=3 SV=1
Length = 89
Score = 37.7 bits (86), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 15/67 (22%), Positives = 38/67 (56%)
Query: 18 RAEVLGLYKTFLRTAKEIPDESSRKEMIDWIRSEFKHNKHLSDETSIKMMIQYGQRSLKE 77
RA+V+ LY+ ++ +K+ P + R + ++ F+ N H+ + ++ ++I + +L
Sbjct: 6 RAQVISLYRMLMKESKKFPSYNYRTYALRRVKDGFRENLHVDNPRTLDLLINQARENLAV 65
Query: 78 VESSVSL 84
++ VS+
Sbjct: 66 IKRQVSI 72
>sp|A3KNJ8|LYM5B_DANRE LYR motif-containing protein 5B OS=Danio rerio GN=lyrm5b PE=3
SV=1
Length = 84
Score = 37.7 bits (86), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Query: 17 LRAEVLGLYKTFLRTAKEIPDESSRKEMIDWIRSEFKHNKHLSDETSIKMMIQYGQRSLK 76
RAEV LYK L +E P + + +R+ F NK + D IK +I G+ +K
Sbjct: 5 FRAEVKQLYKALLFLGREYPKGAD--YFRERLRAAFAKNKDMRDPDKIKQLISRGEFVVK 62
Query: 77 EVESSVSLIK 86
E+E+ L K
Sbjct: 63 ELEALYYLRK 72
>sp|B5FZA8|LYRM4_TAEGU LYR motif-containing protein 4 OS=Taeniopygia guttata GN=LYRM4
PE=3 SV=1
Length = 89
Score = 36.2 bits (82), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 35/62 (56%)
Query: 18 RAEVLGLYKTFLRTAKEIPDESSRKEMIDWIRSEFKHNKHLSDETSIKMMIQYGQRSLKE 77
RA+VL LY+ LR ++ + R I IR F+ NK+++D I+ ++ + +L+
Sbjct: 6 RAQVLRLYRALLRESQRFSSYNYRTYAIRRIRDAFRENKNIADSEKIEELLNKAKANLEV 65
Query: 78 VE 79
++
Sbjct: 66 IQ 67
>sp|Q9GPS1|LYRM7_DICDI LYR motif-containing protein 7 OS=Dictyostelium discoideum
GN=lyrm7 PE=3 SV=1
Length = 140
Score = 36.2 bits (82), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
Query: 18 RAEVLGLYKTFLRTAKEI--PDESSRKEMIDWIRSEFKHNKHLSDETSIKMMIQYG 71
RA+VL Y LRT K++ D+ + + +I+ R +F+ NK+ +D T I MI +
Sbjct: 3 RAKVLSSYLGLLRTEKKVFQNDKRALEHVINLTRVQFRDNKNETDNTKINEMIDHA 58
>sp|Q503U1|LYM5A_DANRE LYR motif-containing protein 5A OS=Danio rerio GN=lyrm5a PE=3
SV=1
Length = 85
Score = 36.2 bits (82), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Query: 17 LRAEVLGLYKTFLRTAKEIPDESSRKEMIDWIRSEFKHNKHLSDETSIKMMIQYGQRSLK 76
LR EV+ LYK L +E P ++ + +++ F NK ++D I+ +I G +K
Sbjct: 5 LRGEVIRLYKNLLYLGREYPKGTA--YFRERLKTAFMKNKDVTDPEKIQKLIDRGDFVIK 62
Query: 77 EVESSVSLIK 86
E+E+ L K
Sbjct: 63 ELEALYYLRK 72
>sp|B5X5U9|LYM4A_SALSA LYR motif-containing protein 4A OS=Salmo salar GN=lyrm4a PE=3
SV=1
Length = 92
Score = 35.8 bits (81), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 14/67 (20%), Positives = 36/67 (53%)
Query: 18 RAEVLGLYKTFLRTAKEIPDESSRKEMIDWIRSEFKHNKHLSDETSIKMMIQYGQRSLKE 77
R +V+ LY+ ++ +K+ P + R + ++ F+ N H+ + ++ M++ + +L
Sbjct: 6 RTQVISLYRMLIKESKKFPSYNYRTYALRRVKDSFRENLHVDNPKTLDMLLNQARENLAV 65
Query: 78 VESSVSL 84
+ VS+
Sbjct: 66 IRRQVSI 72
>sp|B5FXA0|LYRM5_TAEGU LYR motif-containing protein 5 OS=Taeniopygia guttata GN=LYRM5
PE=3 SV=1
Length = 86
Score = 35.8 bits (81), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 10/68 (14%)
Query: 17 LRAEVLGLYKTFLRTAKEIPDESSRKEMIDWIR----SEFKHNKHLSDETSIKMMIQYGQ 72
LR+EV+ LYK L +E P + D+ R + F NK +D IK +I G+
Sbjct: 5 LRSEVIKLYKNLLYLGREYPKGA------DYFRRRLKAAFLKNKDETDPEKIKQLIARGE 58
Query: 73 RSLKEVES 80
+KE+E+
Sbjct: 59 FVIKELEA 66
>sp|B2RYU8|LYRM1_RAT LYR motif-containing protein 1 OS=Rattus norvegicus GN=Lyrm1 PE=2
SV=1
Length = 122
Score = 35.4 bits (80), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 8/59 (13%)
Query: 18 RAEVLGLYKTFLRTAKEIPDESSRKE--------MIDWIRSEFKHNKHLSDETSIKMMI 68
R EVLGLY++F R A++ S + E +++ R+ F+ NK+L+D IK I
Sbjct: 6 RQEVLGLYRSFFRLARKWQAASGQMEDTIKEKQYILNEARTLFQKNKNLTDPDLIKQCI 64
>sp|Q91V16|LYRM5_MOUSE LYR motif-containing protein 5 OS=Mus musculus GN=Lyrm5 PE=2 SV=1
Length = 86
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 8/67 (11%)
Query: 17 LRAEVLGLYKTFLRTAKEIP---DESSRKEMIDWIRSEFKHNKHLSDETSIKMMIQYGQR 73
LR EVL LYK L ++ P D R+ +++ F NK + D IK +I G+
Sbjct: 5 LRGEVLTLYKNLLYLGRDYPKGADYFKRR-----LKNVFLKNKDVEDPEKIKELIARGEF 59
Query: 74 SLKEVES 80
+KE+E+
Sbjct: 60 VMKELEA 66
>sp|B5XCZ6|LYRM5_SALSA LYR motif-containing protein 5 OS=Salmo salar GN=lyrm5 PE=3 SV=1
Length = 92
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Query: 17 LRAEVLGLYKTFLRTAKEIPDESSRKEMIDWIRSEFKHNKHLSDETSIKMMIQYGQRSLK 76
LR+EV LYK L +E P + + ++ F NK ++D IK ++ G+ +K
Sbjct: 5 LRSEVRQLYKNLLFLGREYPKGADY--FGERLKRAFMKNKDVTDPKEIKKLVDRGEFVIK 62
Query: 77 EVESSVSLIK 86
E+E+ L K
Sbjct: 63 ELEALYYLRK 72
>sp|B5X5L2|LYRM1_SALSA LYR motif-containing protein 1 OS=Salmo salar GN=lyrm1 PE=2 SV=1
Length = 120
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Query: 18 RAEVLGLYKTFLRTAK----EIPD--ESSRKEMIDWIRSEFKHNKHLSDETSIKMMI 68
R++VL LY R A+ +P ES R+ ++ ++ F+ N+ L+D TSIK I
Sbjct: 6 RSQVLSLYMRVFRIARGWQSTLPQDTESERRYIVQEAQTLFRQNQQLTDHTSIKKCI 62
>sp|B5FYC7|LYRM1_TAEGU LYR motif-containing protein 1 OS=Taeniopygia guttata GN=LYRM1
PE=2 SV=1
Length = 122
Score = 33.1 bits (74), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 8/60 (13%)
Query: 18 RAEVLGLYKTFLRTAKEIPDESSRKEMI----DWIRSE----FKHNKHLSDETSIKMMIQ 69
R EVLGLY+ R AK S + E ++IR+E F+ NK+++D IK I+
Sbjct: 6 RQEVLGLYRKVFRIAKNWQSASGQIEETMREKEYIRNEARTLFRKNKNVTDPNLIKQCIE 65
>sp|Q55BM0|SDHFB_DICDI Succinate dehydrogenase assembly factor 1 homolog B,
mitochondrial OS=Dictyostelium discoideum GN=sdhaf1B
PE=3 SV=1
Length = 111
Score = 32.7 bits (73), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 21 VLGLYKTFLRTAKEIPDESSRKEMIDWIRSEFKHNK--HLSDETSIKMMIQYGQRSLK 76
VL LYK L +AK P ++ M +I+ +F+ NK H D +I+ +++ G+ LK
Sbjct: 13 VLDLYKRCLYSAKRCPKYQNQMMMESYIKLKFRSNKEIHQKDFETIENLLKQGEEELK 70
>sp|Q3E785|SDHF1_YEAST Succinate dehydrogenase assembly factor 1 homolog, mitochondrial
OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=YDR379C-A PE=1 SV=1
Length = 79
Score = 32.7 bits (73), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 36/61 (59%), Gaps = 3/61 (4%)
Query: 17 LRAEVLGLYKTFLRTAKEIPDESSRKEMIDWIRSEFKHNKHLS--DETSIKMMIQYGQRS 74
L+ EVL LY+ +RTA P E ++ +++I EF ++L D T+I+ +++ G +
Sbjct: 8 LQKEVLHLYRASIRTAHTKPKE-NQVNFVNYIHEEFGKYRNLPRKDFTTIEHLLRVGNKK 66
Query: 75 L 75
+
Sbjct: 67 I 67
>sp|A6ZYX9|SDHF1_YEAS7 Succinate dehydrogenase assembly factor 1 homolog, mitochondrial
OS=Saccharomyces cerevisiae (strain YJM789) GN=SCY_1267
PE=3 SV=1
Length = 79
Score = 32.7 bits (73), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 36/61 (59%), Gaps = 3/61 (4%)
Query: 17 LRAEVLGLYKTFLRTAKEIPDESSRKEMIDWIRSEFKHNKHLS--DETSIKMMIQYGQRS 74
L+ EVL LY+ +RTA P E ++ +++I EF ++L D T+I+ +++ G +
Sbjct: 8 LQKEVLHLYRASIRTAHTKPKE-NQVNFVNYIHEEFGKYRNLPRKDFTTIEHLLRVGNKK 66
Query: 75 L 75
+
Sbjct: 67 I 67
>sp|O43325|LYRM1_HUMAN LYR motif-containing protein 1 OS=Homo sapiens GN=LYRM1 PE=2 SV=1
Length = 122
Score = 32.7 bits (73), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 8/59 (13%)
Query: 18 RAEVLGLYKTFLRTAKEIPDESSRKE--------MIDWIRSEFKHNKHLSDETSIKMMI 68
R EVLGLY++ R A++ S + E +++ R+ F+ NK+L+D IK I
Sbjct: 6 RQEVLGLYRSIFRLARKWQATSGQMEDTIKEKQYILNEARTLFRKNKNLTDTDLIKQCI 64
>sp|A4YK73|ACSA_BRASO Acetyl-coenzyme A synthetase OS=Bradyrhizobium sp. (strain ORS278)
GN=acsA PE=3 SV=1
Length = 650
Score = 31.6 bits (70), Expect = 1.7, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 23 GLYKTFLRTAKEIPDESSRKEMIDWIRSE 51
G+Y A E P E RKE++ W+R E
Sbjct: 555 GIYAYVTLMAGETPSEELRKELVGWVRKE 583
>sp|Q54T58|LYRM1_DICDI LYR motif-containing protein 1 OS=Dictyostelium discoideum
GN=lyrm1 PE=3 SV=1
Length = 117
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 28/49 (57%)
Query: 12 FRQFLLRAEVLGLYKTFLRTAKEIPDESSRKEMIDWIRSEFKHNKHLSD 60
F Q R + L +Y++ LR A + +S R+++ RS F+ NK L+D
Sbjct: 17 FSQLSQRNKALYMYRSILRLANKWESDSQREDIRYETRSTFQKNKDLTD 65
>sp|Q28CF8|ENTP7_XENTR Ectonucleoside triphosphate diphosphohydrolase 7 OS=Xenopus
tropicalis GN=entpd7 PE=2 SV=1
Length = 610
Score = 30.8 bits (68), Expect = 2.7, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 24 LYKTFLRTAKEIPDESSRKEMIDWIRSEFKHNKHL 58
LYKT ++I ESSR + W R F +N +L
Sbjct: 525 LYKTRFLPLRDIRQESSRPAHVSWFRISFVYNHYL 559
>sp|A9CKQ7|PNP_AGRT5 Polyribonucleotide nucleotidyltransferase OS=Agrobacterium
tumefaciens (strain C58 / ATCC 33970) GN=pnp PE=3 SV=1
Length = 713
Score = 30.8 bits (68), Expect = 2.8, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 26/37 (70%)
Query: 17 LRAEVLGLYKTFLRTAKEIPDESSRKEMIDWIRSEFK 53
L E+LGL +T LRTA +I ++++R +D ++++ K
Sbjct: 241 LENEMLGLAETELRTAYKITEKAARYAAVDAVKTKVK 277
>sp|Q55CX9|IPO7_DICDI Probable importin-7 homolog OS=Dictyostelium discoideum
GN=DDB_G0269860 PE=3 SV=1
Length = 1065
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 20 EVLGLYKTFLRTAKEIPD--ESSRKEMIDWIRSEF--KHNKHLSDETSIKMMIQYGQRSL 75
E LG+Y T LR K+IPD S ++++ ++ F H +L + I + Y +S+
Sbjct: 618 ECLGVYCTLLRALKDIPDVFNSLEQQIVPILQKLFTSDHMMYLDEALRILTFVTYYPKSI 677
>sp|Q8I4R2|RBP3_PLAF7 Reticulocyte-binding protein 3 OS=Plasmodium falciparum (isolate 3D7)
GN=Rh3 PE=3 SV=1
Length = 2792
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 21/36 (58%)
Query: 11 NFRQFLLRAEVLGLYKTFLRTAKEIPDESSRKEMID 46
NF FL + E L L K++L K I +E RKE +D
Sbjct: 2475 NFSTFLPQNEKLVLIKSYLNDIKNIMNELMRKEQVD 2510
>sp|O58613|Y883_PYRHO UPF0051 protein PH0883 OS=Pyrococcus horikoshii (strain ATCC 700860
/ DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=PH0883
PE=3 SV=1
Length = 326
Score = 29.3 bits (64), Expect = 7.0, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 51 EFKHNKHLSDETSIKMMIQYGQRSLKEVESSVSLIK 86
+F KH + E ++M+ G+RS+ E+ES V +K
Sbjct: 175 KFSLTKHRAKELKLEMIANLGERSVLELESKVKAVK 210
>sp|A0M787|PANC_GRAFK Pantothenate synthetase OS=Gramella forsetii (strain KT0803)
GN=panC PE=3 SV=1
Length = 283
Score = 28.9 bits (63), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 2 SSKLPKSTLNFR-QFLLRAEVLGLYKTFLRTAKEIPDESSRKEMIDWIRSEFKHNKHL 58
S L +S+ N R F R E +Y+ L+ A + S + +W+ ++FK+N+HL
Sbjct: 181 DSGLARSSRNERLSFQNRKEAAFIYEV-LQNANRLFGTESAEHTTNWVENQFKNNQHL 237
>sp|Q60952|CP250_MOUSE Centrosome-associated protein CEP250 OS=Mus musculus GN=Cep250 PE=1
SV=4
Length = 2414
Score = 28.9 bits (63), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 5/61 (8%)
Query: 20 EVLGLYKTFLRTAKEIPDESSRKEMIDWIRSEFKHNKHLSDETS--IKMMIQYGQRSLKE 77
E + L +T LRT KE+ D S + ++ +R + K K ET+ ++ +Q Q+ LKE
Sbjct: 927 ERVSLLETLLRTQKELADAS---QQLERLRQDMKIQKLKEQETTGMLQAQLQETQQELKE 983
Query: 78 V 78
Sbjct: 984 A 984
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.129 0.349
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,596,705
Number of Sequences: 539616
Number of extensions: 766663
Number of successful extensions: 3058
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 3026
Number of HSP's gapped (non-prelim): 55
length of query: 86
length of database: 191,569,459
effective HSP length: 56
effective length of query: 30
effective length of database: 161,350,963
effective search space: 4840528890
effective search space used: 4840528890
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)