Query psy4709
Match_columns 86
No_of_seqs 108 out of 1004
Neff 7.4
Searched_HMMs 46136
Date Fri Aug 16 23:50:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4709.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4709hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3801|consensus 99.9 6.5E-22 1.4E-26 118.6 8.6 70 16-85 4-73 (94)
2 PF13232 Complex1_LYR_1: Compl 99.8 1.4E-19 3.1E-24 102.0 6.8 61 19-79 1-61 (61)
3 PF05347 Complex1_LYR: Complex 99.8 8.4E-19 1.8E-23 97.8 6.4 59 19-77 1-59 (59)
4 KOG3426|consensus 99.5 3.8E-14 8.1E-19 88.3 6.6 79 2-80 7-90 (124)
5 KOG4620|consensus 99.5 6.8E-13 1.5E-17 76.8 8.0 66 14-80 4-71 (80)
6 KOG4100|consensus 98.8 1E-07 2.2E-12 59.7 8.4 64 19-84 10-73 (125)
7 KOG3466|consensus 98.6 1.5E-07 3.2E-12 60.9 5.4 67 12-79 7-74 (157)
8 PF13233 Complex1_LYR_2: Compl 98.4 1.5E-06 3.2E-11 53.2 6.9 62 21-82 1-73 (104)
9 PF04716 ETC_C1_NDUFA5: ETC co 95.0 0.25 5.4E-06 27.4 6.5 52 17-68 3-55 (57)
10 KOG2652|consensus 52.6 75 0.0016 23.7 6.2 46 19-78 5-50 (348)
11 PF09860 DUF2087: Uncharacteri 51.9 44 0.00095 19.0 4.8 49 34-83 5-54 (71)
12 PRK10635 bacterioferritin; Pro 51.7 44 0.00095 21.8 4.5 35 16-50 92-126 (158)
13 COG0362 Gnd 6-phosphogluconate 49.7 38 0.00083 26.1 4.4 43 40-82 367-409 (473)
14 PF07438 DUF1514: Protein of u 48.2 51 0.0011 18.7 4.3 35 41-75 30-64 (66)
15 KOG2653|consensus 47.1 30 0.00065 26.5 3.5 22 40-61 372-393 (487)
16 PF15076 DUF4543: Domain of un 46.4 56 0.0012 18.7 3.8 30 26-55 15-57 (75)
17 PF04282 DUF438: Family of unk 43.4 43 0.00094 19.2 3.1 35 45-80 15-53 (71)
18 PF06694 Plant_NMP1: Plant nuc 41.7 97 0.0021 22.9 5.3 60 15-84 251-316 (325)
19 KOG0493|consensus 41.0 26 0.00057 25.5 2.3 22 42-63 255-276 (342)
20 PF04358 DsrC: DsrC like prote 40.0 90 0.002 19.3 5.3 29 43-71 45-73 (109)
21 KOG3365|consensus 39.6 1.1E+02 0.0024 20.0 7.8 67 17-83 49-125 (145)
22 KOG1547|consensus 35.0 62 0.0013 23.6 3.4 35 22-56 175-217 (336)
23 PF08006 DUF1700: Protein of u 34.3 1.3E+02 0.0029 19.5 5.3 34 18-55 3-36 (181)
24 PRK10292 hypothetical protein; 32.6 1E+02 0.0022 17.6 4.5 45 22-66 8-59 (69)
25 PF04695 Pex14_N: Peroxisomal 32.4 68 0.0015 20.3 3.1 26 48-74 25-50 (136)
26 TIGR00754 bfr bacterioferritin 30.7 1.4E+02 0.0031 18.8 4.6 25 19-43 95-119 (157)
27 KOG4274|consensus 30.3 2E+02 0.0043 23.4 5.7 34 33-66 4-39 (742)
28 PF00393 6PGD: 6-phosphoglucon 30.2 64 0.0014 23.4 2.9 22 40-61 190-211 (291)
29 TIGR02690 resist_ArsH arsenica 29.3 2E+02 0.0042 19.9 6.2 52 20-73 144-195 (219)
30 TIGR00188 rnpA ribonuclease P 29.1 71 0.0015 19.2 2.6 20 38-57 54-73 (105)
31 PRK05629 hypothetical protein; 28.4 2.2E+02 0.0047 20.2 5.4 59 22-80 108-167 (318)
32 COG4086 Predicted secreted pro 27.8 2.3E+02 0.0049 20.8 5.3 34 41-75 193-226 (299)
33 PF00825 Ribonuclease_P: Ribon 27.7 1.2E+02 0.0025 18.2 3.4 21 38-58 56-76 (111)
34 smart00139 MyTH4 Domain in Myo 27.5 1.3E+02 0.0027 19.3 3.7 34 4-37 5-38 (144)
35 PF05635 23S_rRNA_IVP: 23S rRN 27.4 1.4E+02 0.0031 17.7 6.2 73 11-85 2-82 (110)
36 TIGR00873 gnd 6-phosphoglucona 27.0 97 0.0021 23.8 3.6 22 40-61 363-384 (467)
37 PTZ00142 6-phosphogluconate de 26.8 94 0.002 23.9 3.5 22 40-61 369-390 (470)
38 KOG2713|consensus 26.0 1.6E+02 0.0034 21.9 4.3 28 46-75 300-327 (347)
39 KOG0810|consensus 25.8 2.7E+02 0.0058 20.3 5.5 57 18-74 122-181 (297)
40 PRK01903 rnpA ribonuclease P; 24.7 75 0.0016 20.2 2.2 22 36-57 62-83 (133)
41 PRK14865 rnpA ribonuclease P; 24.2 98 0.0021 18.9 2.7 19 39-57 59-77 (116)
42 PRK09287 6-phosphogluconate de 24.0 1.2E+02 0.0026 23.3 3.6 22 40-61 355-376 (459)
43 PRK00499 rnpA ribonuclease P; 24.0 88 0.0019 19.0 2.4 19 39-57 52-70 (114)
44 KOG2908|consensus 23.8 3.3E+02 0.0071 20.7 6.8 62 17-78 70-148 (380)
45 PRK00730 rnpA ribonuclease P; 23.3 94 0.002 20.1 2.5 19 39-57 60-78 (138)
46 PF10273 WGG: Pre-rRNA-process 22.3 1.7E+02 0.0037 16.9 4.4 32 40-72 32-63 (82)
47 PRK00588 rnpA ribonuclease P; 22.1 1E+02 0.0022 19.1 2.4 20 38-57 56-75 (118)
48 COG1647 Esterase/lipase [Gener 22.0 61 0.0013 23.0 1.5 70 8-82 110-184 (243)
49 cd00907 Bacterioferritin Bacte 21.9 2.1E+02 0.0045 17.6 4.6 36 19-55 94-129 (153)
50 PRK00396 rnpA ribonuclease P; 21.5 1.3E+02 0.0027 19.1 2.8 20 38-57 60-79 (130)
51 PRK13415 flagella biosynthesis 21.3 1.3E+02 0.0029 21.0 3.1 25 57-81 139-163 (219)
52 PRK12275 hypothetical protein; 21.2 2E+02 0.0044 17.3 8.3 74 11-85 3-83 (116)
53 cd01052 DPSL DPS-like protein, 21.1 2.1E+02 0.0046 17.5 4.8 14 20-33 107-120 (148)
54 PF08581 Tup_N: Tup N-terminal 20.5 1.7E+02 0.0038 17.0 3.1 40 42-81 3-47 (79)
55 PF08828 DSX_dimer: Doublesex 20.4 97 0.0021 17.4 1.9 26 59-84 36-61 (62)
56 PF06144 DNA_pol3_delta: DNA p 20.3 2E+02 0.0044 17.9 3.7 57 24-81 108-166 (172)
No 1
>KOG3801|consensus
Probab=99.87 E-value=6.5e-22 Score=118.55 Aligned_cols=70 Identities=26% Similarity=0.453 Sum_probs=67.5
Q ss_pred hhHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy4709 16 LLRAEVLGLYKTFLRTAKEIPDESSRKEMIDWIRSEFKHNKHLSDETSIKMMIQYGQRSLKEVESSVSLI 85 (86)
Q Consensus 16 ~~r~~vl~LYR~~LR~~~~~~~~~~r~~~~~~iR~eF~~nk~~td~~~i~~ll~~g~~~l~~l~~~~~~~ 85 (86)
+.+++|++|||.+||.++.||+||+|+|+.+++|+.|++|++++||.+|..++++|+++|+.+++|+.|.
T Consensus 4 ~sr~qvlsLyr~~lr~s~qfp~YNyReY~~RrtRD~Fr~Nkn~~Dp~e~~~l~~eakk~LevikRQ~ii~ 73 (94)
T KOG3801|consen 4 VSRRQVLSLYRNLLRESKQFPQYNYREYFQRRTRDTFRANKNVCDPAEIKKLYKEAKKQLEVIKRQSIIG 73 (94)
T ss_pred ccHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578999999999999999999999999999999999999999999999999999999999999999874
No 2
>PF13232 Complex1_LYR_1: Complex1_LYR-like
Probab=99.80 E-value=1.4e-19 Score=101.97 Aligned_cols=61 Identities=31% Similarity=0.569 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHH
Q psy4709 19 AEVLGLYKTFLRTAKEIPDESSRKEMIDWIRSEFKHNKHLSDETSIKMMIQYGQRSLKEVE 79 (86)
Q Consensus 19 ~~vl~LYR~~LR~~~~~~~~~~r~~~~~~iR~eF~~nk~~td~~~i~~ll~~g~~~l~~l~ 79 (86)
++||+|||.+||.++.||+++.|+++..+||++|+.|+++|||+.|..++..|+..|..|+
T Consensus 1 ~~vL~LYR~lLR~~~~~~~~~~r~~~~~~ir~~Fr~~~~~td~~~i~~~l~~~~~~L~~l~ 61 (61)
T PF13232_consen 1 QQVLSLYRQLLREASKFPDYNFRSYFRRRIRDRFRRNKNVTDPEKIAKLLKEGRKELELLR 61 (61)
T ss_pred ChHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 3799999999999999999999999999999999999999999999999999999999874
No 3
>PF05347 Complex1_LYR: Complex 1 protein (LYR family); InterPro: IPR008011 This family of short proteins includes proteins from the NADH-ubiquinone oxidoreductase complex I. The family includes the B14 subunit from bovine NADH-ubiquinone oxidoreductase B14 subunit Q02366 from SWISSPROT, and the B22 subunit from the human enzyme Q9Y6M9 from SWISSPROT. The family has been named LYR after a highly conserved tripeptide motif close to the N terminus of these proteins. Members of this family also found in yeast which do contain this complex. In these organisms they are believed to be be required for iron-sulphur custer biogenesis.
Probab=99.78 E-value=8.4e-19 Score=97.83 Aligned_cols=59 Identities=34% Similarity=0.621 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHH
Q psy4709 19 AEVLGLYKTFLRTAKEIPDESSRKEMIDWIRSEFKHNKHLSDETSIKMMIQYGQRSLKE 77 (86)
Q Consensus 19 ~~vl~LYR~~LR~~~~~~~~~~r~~~~~~iR~eF~~nk~~td~~~i~~ll~~g~~~l~~ 77 (86)
++||+|||.+||+++.||+++.+.++..+||++|++|+++|||..|+.++..|+..|++
T Consensus 1 q~vl~LYR~lLR~~~~~~~~~~r~~~~~~iR~~Fr~n~~~~d~~~I~~~l~~g~~~l~~ 59 (59)
T PF05347_consen 1 QRVLSLYRQLLRAARSFPDDSEREYIRAEIRQEFRKNRNETDPEKIEELLKKGEEELEM 59 (59)
T ss_pred ChHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcC
Confidence 37999999999999999998889999999999999999999999999999999998863
No 4
>KOG3426|consensus
Probab=99.52 E-value=3.8e-14 Score=88.28 Aligned_cols=79 Identities=27% Similarity=0.429 Sum_probs=69.5
Q ss_pred CCCCCCCccChhhhhhHHHHHHHHHHHHHHhhCCCC-----hhHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHH
Q psy4709 2 SSKLPKSTLNFRQFLLRAEVLGLYKTFLRTAKEIPD-----ESSRKEMIDWIRSEFKHNKHLSDETSIKMMIQYGQRSLK 76 (86)
Q Consensus 2 ~~~l~~~~~s~~~~~~r~~vl~LYR~~LR~~~~~~~-----~~~r~~~~~~iR~eF~~nk~~td~~~i~~ll~~g~~~l~ 76 (86)
|.++++|+.|....+.|++|+.|||.+.|+...+-+ +..-+.++..||++|++|.++|||..|+.|+.+|..+|+
T Consensus 7 av~~v~Pi~S~n~~EARrrvl~~yra~~R~iP~~~~dy~L~dm~~~~~R~~ir~qf~kn~hvTD~rViDlLV~kg~~elk 86 (124)
T KOG3426|consen 7 AVKIVVPINSANLTEARRRVLDLYRAWYRSIPTIVDDYNLQDMTVSQLRDKIREQFRKNAHVTDPRVIDLLVIKGMEELK 86 (124)
T ss_pred hHhhcCCCccCcHHHHHHHHHHHHHHHHHhcChHHHhcCCcccCHHHHHHHHHHHHHhcCCcCCchhhhHHHHhhHHHHH
Confidence 678899999999999999999999999997765432 123478999999999999999999999999999999999
Q ss_pred HHHH
Q psy4709 77 EVES 80 (86)
Q Consensus 77 ~l~~ 80 (86)
++..
T Consensus 87 eiv~ 90 (124)
T KOG3426|consen 87 EIVD 90 (124)
T ss_pred HHHH
Confidence 8764
No 5
>KOG4620|consensus
Probab=99.46 E-value=6.8e-13 Score=76.81 Aligned_cols=66 Identities=27% Similarity=0.507 Sum_probs=57.4
Q ss_pred hhhhHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhCCCC--CHHHHHHHHHHHHHHHHHHHH
Q psy4709 14 QFLLRAEVLGLYKTFLRTAKEIPDESSRKEMIDWIRSEFKHNKHLS--DETSIKMMIQYGQRSLKEVES 80 (86)
Q Consensus 14 ~~~~r~~vl~LYR~~LR~~~~~~~~~~r~~~~~~iR~eF~~nk~~t--d~~~i~~ll~~g~~~l~~l~~ 80 (86)
...++++||+|||++||+++..|..+. .-|..+|++||++|.+++ |.-.|+.|+..|+++++.+..
T Consensus 4 lSgLQrqVlhlYR~~lraa~~Kp~~~~-~~~m~fvh~EFrk~~~lpr~Df~~IEhLlRvG~rq~~~~s~ 71 (80)
T KOG4620|consen 4 LSGLQRQVLHLYRDLLRAARGKPGAEA-RRWMAFVHAEFRKHAGLPRSDFLRIEHLLRVGRRQLQLLSS 71 (80)
T ss_pred hhHHHHHHHHHHHHHHHHhcCCCchHH-HHHHHHHHHHHHHhcCCcHhHHHHHHHHHHHhHHHHHHhcC
Confidence 456789999999999999999998655 456779999999999995 778999999999999987653
No 6
>KOG4100|consensus
Probab=98.76 E-value=1e-07 Score=59.74 Aligned_cols=64 Identities=20% Similarity=0.297 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHhhhh
Q psy4709 19 AEVLGLYKTFLRTAKEIPDESSRKEMIDWIRSEFKHNKHLSDETSIKMMIQYGQRSLKEVESSVSL 84 (86)
Q Consensus 19 ~~vl~LYR~~LR~~~~~~~~~~r~~~~~~iR~eF~~nk~~td~~~i~~ll~~g~~~l~~l~~~~~~ 84 (86)
..|.-|||++||..+-+|. ..|...=++|++||+.|+++ +|..+..++.++++-...|..|.+.
T Consensus 10 ~rvrlLYkriLrlHr~lp~-~~R~lGD~YVkdEFrrHk~v-np~~~~~FlteW~~Ya~~l~qql~~ 73 (125)
T KOG4100|consen 10 PRVRLLYKRILRLHRGLPA-ELRALGDQYVKDEFRRHKTV-NPLEAQGFLTEWERYAVALSQQLSS 73 (125)
T ss_pred chHHHHHHHHHHHHccCCh-HHHHHHHHHHHHHHHHhccC-ChHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3566799999999999996 67888889999999999999 8999999999999999999888764
No 7
>KOG3466|consensus
Probab=98.58 E-value=1.5e-07 Score=60.90 Aligned_cols=67 Identities=24% Similarity=0.245 Sum_probs=55.8
Q ss_pred hhhhhhHHHHHHHHHHHHHHhhCCCChh-HHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHH
Q psy4709 12 FRQFLLRAEVLGLYKTFLRTAKEIPDES-SRKEMIDWIRSEFKHNKHLSDETSIKMMIQYGQRSLKEVE 79 (86)
Q Consensus 12 ~~~~~~r~~vl~LYR~~LR~~~~~~~~~-~r~~~~~~iR~eF~~nk~~td~~~i~~ll~~g~~~l~~l~ 79 (86)
.....++++|++|||++||..-.|-+.. .-.|..-.||..|+.|++ .|..++..||+.|+.+|-+.+
T Consensus 7 ~~~lshkqkV~rLYKRaLR~lenWy~~rn~yRy~ac~~RARFden~~-kD~~k~~~LLa~ge~E~w~~r 74 (157)
T KOG3466|consen 7 ARRLSHKQKVRRLYKRALRDLENWYVHRNIYRYQACIIRARFDENDE-KDVDKAIRLLAEGERELWEWR 74 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhhhhhh-hhHHHHHHHHHHHHHHHHhhc
Confidence 3445669999999999999998887632 235677789999999998 999999999999999997754
No 8
>PF13233 Complex1_LYR_2: Complex1_LYR-like
Probab=98.43 E-value=1.5e-06 Score=53.15 Aligned_cols=62 Identities=26% Similarity=0.426 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHhhCCCChhH-------HHHHHHHH----HHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHhh
Q psy4709 21 VLGLYKTFLRTAKEIPDESS-------RKEMIDWI----RSEFKHNKHLSDETSIKMMIQYGQRSLKEVESSV 82 (86)
Q Consensus 21 vl~LYR~~LR~~~~~~~~~~-------r~~~~~~i----R~eF~~nk~~td~~~i~~ll~~g~~~l~~l~~~~ 82 (86)
|++|||.+||+.+.+|.... +..+..+| +++|+.|.+.+|+......+..+++-+..+..+-
T Consensus 1 V~~lYR~lLRel~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ef~~~~~~~~~~~~~~~~~~~~~y~~~L~~qr 73 (104)
T PF13233_consen 1 VLSLYRSLLRELRRYPRRSKIHQLKAPRSPGDQYVLEQARAEFRRHKSANDEEEAQEFLQEWENYATFLKNQR 73 (104)
T ss_pred ChHHHHHHHHHHHhhcchhhhhhhhchhHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999875321 15677889 9999999999989999999999999998888765
No 9
>PF04716 ETC_C1_NDUFA5: ETC complex I subunit conserved region; InterPro: IPR006806 This is a family of eukaryotic NADH-ubiquinone oxidoreductase subunits (1.6.5.3 from EC) (1.6.99.3 from EC) from complex I of the electron transport chain initially identified in Neurospora crassa as a 29.9 kDa protein. The conserved region is found at the N terminus of the member proteins [].; GO: 0016651 oxidoreductase activity, acting on NADH or NADPH, 0022904 respiratory electron transport chain, 0005743 mitochondrial inner membrane
Probab=95.05 E-value=0.25 Score=27.36 Aligned_cols=52 Identities=23% Similarity=0.342 Sum_probs=44.0
Q ss_pred hHHHHHHHHHHHHHHhhCCCCh-hHHHHHHHHHHHHHHhhCCCCCHHHHHHHH
Q psy4709 17 LRAEVLGLYKTFLRTAKEIPDE-SSRKEMIDWIRSEFKHNKHLSDETSIKMMI 68 (86)
Q Consensus 17 ~r~~vl~LYR~~LR~~~~~~~~-~~r~~~~~~iR~eF~~nk~~td~~~i~~ll 68 (86)
.+.....||.+.|+....+|.. .+|.+.=.-+++.+.--....|.++|+..|
T Consensus 3 pr~~L~~lY~~~L~~L~~~P~~a~YR~~tE~it~~Rl~iv~~~~d~~~iE~~i 55 (57)
T PF04716_consen 3 PREALISLYNKTLKALKKIPEDAAYRQYTEAITKHRLKIVEEEEDIEKIEKKI 55 (57)
T ss_pred hHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHccccHHHHHHHh
Confidence 4667899999999999999973 578888888888888777889998888765
No 10
>KOG2652|consensus
Probab=52.56 E-value=75 Score=23.74 Aligned_cols=46 Identities=20% Similarity=0.356 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHH
Q psy4709 19 AEVLGLYKTFLRTAKEIPDESSRKEMIDWIRSEFKHNKHLSDETSIKMMIQYGQRSLKEV 78 (86)
Q Consensus 19 ~~vl~LYR~~LR~~~~~~~~~~r~~~~~~iR~eF~~nk~~td~~~i~~ll~~g~~~l~~l 78 (86)
..|..+|+.++- .++..+|+.|..+- -|...+.+|-..++.+|-.-
T Consensus 5 ~~v~kvY~~VIe------------DVI~~vRe~F~~~G--iDeqvL~eLk~lWe~Kl~qs 50 (348)
T KOG2652|consen 5 NTVSKVYESVIE------------DVINNVREDFLENG--IDEQVLSELKNLWETKLIQS 50 (348)
T ss_pred cchHHHHHHHHH------------HHHHHHHHHHHhcC--ccHHHHHHHHHHHHHHHHhh
Confidence 356778887764 58889999999886 67889999999888877543
No 11
>PF09860 DUF2087: Uncharacterized protein conserved in bacteria (DUF2087); InterPro: IPR018656 This domain, found in various hypothetical prokaryotic proteins and transcriptional activators, has no known function.
Probab=51.87 E-value=44 Score=19.05 Aligned_cols=49 Identities=12% Similarity=0.288 Sum_probs=35.5
Q ss_pred CCCCh-hHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHhhh
Q psy4709 34 EIPDE-SSRKEMIDWIRSEFKHNKHLSDETSIKMMIQYGQRSLKEVESSVS 83 (86)
Q Consensus 34 ~~~~~-~~r~~~~~~iR~eF~~nk~~td~~~i~~ll~~g~~~l~~l~~~~~ 83 (86)
.||.. ..+..++.+|-+.|...+..+ +.+|...|...-.....+++.++
T Consensus 5 ~~P~k~~~r~~iL~~l~~~f~~g~~y~-E~EVN~~L~~~~~D~a~LRR~LV 54 (71)
T PF09860_consen 5 RWPSKRKKRLVILEYLASRFEPGREYS-EKEVNEILKRFFDDYATLRRYLV 54 (71)
T ss_pred ccCccHHHHHHHHHHHHHhCCCCCccC-HHHHHHHHHHHcccHHHHHHHHH
Confidence 56652 245677888999997776666 77788888887777777777654
No 12
>PRK10635 bacterioferritin; Provisional
Probab=51.68 E-value=44 Score=21.79 Aligned_cols=35 Identities=23% Similarity=0.183 Sum_probs=26.3
Q ss_pred hhHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHH
Q psy4709 16 LLRAEVLGLYKTFLRTAKEIPDESSRKEMIDWIRS 50 (86)
Q Consensus 16 ~~r~~vl~LYR~~LR~~~~~~~~~~r~~~~~~iR~ 50 (86)
..-..++..|+.+++.+..-.|+..+..+...+.+
T Consensus 92 ~~E~~ai~~y~e~i~~a~~~~D~~s~~ll~~iL~d 126 (158)
T PRK10635 92 RLELEGAKDLREAIAYADSVHDYVSRDMMIEILAD 126 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34458899999999999988887777666654444
No 13
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=49.70 E-value=38 Score=26.12 Aligned_cols=43 Identities=16% Similarity=0.191 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHhh
Q psy4709 40 SRKEMIDWIRSEFKHNKHLSDETSIKMMIQYGQRSLKEVESSV 82 (86)
Q Consensus 40 ~r~~~~~~iR~eF~~nk~~td~~~i~~ll~~g~~~l~~l~~~~ 82 (86)
.|..|++.|++.|++|.++.+.-.-..+....++...-|++.+
T Consensus 367 IRs~FL~~I~~af~~~p~l~nLl~~pyF~~~~~~~~~~~R~vV 409 (473)
T COG0362 367 IRSKFLDKITDAFDENPELANLLLAPYFKSILEEYQQSLRRVV 409 (473)
T ss_pred ehHHHHHHHHHHHhcCcchhhhhcCHHHHHHHHHHHHHHHHHH
Confidence 3688999999999999888765433333333333444444433
No 14
>PF07438 DUF1514: Protein of unknown function (DUF1514); InterPro: IPR009999 This entry is represented by Bacteriophage phi PVL, Orf60. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several Staphylococcus aureus and related bacteriophage proteins of around 65 residues in length. The function of this family is unknown.
Probab=48.24 E-value=51 Score=18.74 Aligned_cols=35 Identities=14% Similarity=0.217 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHH
Q psy4709 41 RKEMIDWIRSEFKHNKHLSDETSIKMMIQYGQRSL 75 (86)
Q Consensus 41 r~~~~~~iR~eF~~nk~~td~~~i~~ll~~g~~~l 75 (86)
-.|+..++.++|-++.+..+-+..+.-++...+++
T Consensus 30 lkY~N~yL~~~~v~~~g~~gl~~~~~e~~r~~~~~ 64 (66)
T PF07438_consen 30 LKYMNDYLFDQFVRDNGYEGLEEYEIEIERIKKDF 64 (66)
T ss_pred HHHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHh
Confidence 36788899999999999998887777777666554
No 15
>KOG2653|consensus
Probab=47.05 E-value=30 Score=26.47 Aligned_cols=22 Identities=23% Similarity=0.466 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHhhCCCCCH
Q psy4709 40 SRKEMIDWIRSEFKHNKHLSDE 61 (86)
Q Consensus 40 ~r~~~~~~iR~eF~~nk~~td~ 61 (86)
.|.-|+..|++.|++|.++.|.
T Consensus 372 IRsvfL~~I~~a~~~~p~l~nl 393 (487)
T KOG2653|consen 372 IRSVFLDRIKKAYQRNPDLANL 393 (487)
T ss_pred eeHHHHHHHHHHHhcCccHhhh
Confidence 3688999999999999997655
No 16
>PF15076 DUF4543: Domain of unknown function (DUF4543)
Probab=46.41 E-value=56 Score=18.74 Aligned_cols=30 Identities=30% Similarity=0.586 Sum_probs=18.5
Q ss_pred HHHHHHhhC-------CCChhHHHHHH------HHHHHHHHhh
Q psy4709 26 KTFLRTAKE-------IPDESSRKEMI------DWIRSEFKHN 55 (86)
Q Consensus 26 R~~LR~~~~-------~~~~~~r~~~~------~~iR~eF~~n 55 (86)
+++||+-+. |||...|+|+. ++..++|-+|
T Consensus 15 KqlLRsrR~dr~~K~GfpdepmrE~ml~l~~LeqraeEqflEh 57 (75)
T PF15076_consen 15 KQLLRSRRQDRPRKPGFPDEPMREYMLHLQALEQRAEEQFLEH 57 (75)
T ss_pred HHHHHHHHhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 566776655 77766788776 3445555443
No 17
>PF04282 DUF438: Family of unknown function (DUF438); InterPro: IPR007380 This is a a group of uncharacterised proteins.
Probab=43.42 E-value=43 Score=19.23 Aligned_cols=35 Identities=23% Similarity=0.325 Sum_probs=23.2
Q ss_pred HHHHHHHHHhhCCCCCHHHH----HHHHHHHHHHHHHHHH
Q psy4709 45 IDWIRSEFKHNKHLSDETSI----KMMIQYGQRSLKEVES 80 (86)
Q Consensus 45 ~~~iR~eF~~nk~~td~~~i----~~ll~~g~~~l~~l~~ 80 (86)
...||++|.+.=.--+|.+| +.|+.+| -..+++++
T Consensus 15 ~e~vk~~F~~~~~~Vs~~EI~~~Eq~Li~eG-~~~eeiq~ 53 (71)
T PF04282_consen 15 PEEVKEEFKKLFSDVSASEISAAEQELIQEG-MPVEEIQK 53 (71)
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHcC-CCHHHHHH
Confidence 35789999888766678777 4666666 34444443
No 18
>PF06694 Plant_NMP1: Plant nuclear matrix protein 1 (NMP1); InterPro: IPR010604 This family consists of several plant specific nuclear matrix protein 1 (NMP1) sequences. Nuclear Matrix Protein 1 is a ubiquitously expressed 36 kDa protein, which has no homologues in animals and fungi, but is highly conserved among flowering and non-flowering plants. NMP1 is located both in the cytoplasm and nucleus and that the nuclear fraction is associated with the nuclear matrix. NMP1 is a candidate for a plant-specific structural protein with a function both in the nucleus and cytoplasm [].
Probab=41.70 E-value=97 Score=22.90 Aligned_cols=60 Identities=17% Similarity=0.246 Sum_probs=42.7
Q ss_pred hhhHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhCCCC------CHHHHHHHHHHHHHHHHHHHHhhhh
Q psy4709 15 FLLRAEVLGLYKTFLRTAKEIPDESSRKEMIDWIRSEFKHNKHLS------DETSIKMMIQYGQRSLKEVESSVSL 84 (86)
Q Consensus 15 ~~~r~~vl~LYR~~LR~~~~~~~~~~r~~~~~~iR~eF~~nk~~t------d~~~i~~ll~~g~~~l~~l~~~~~~ 84 (86)
.+...+|+.+|..+++....+ +.+|+-+.+-...+ .|..+..++.+|+.-|..+++.+.|
T Consensus 251 GPAa~Rlle~y~~l~klL~nL----------~~lr~Sh~ai~~gs~~t~s~e~~s~~~ivs~~e~al~~lnr~l~i 316 (325)
T PF06694_consen 251 GPAANRLLELYKMLLKLLGNL----------ATLRDSHAAIAAGSSPTTSDEPSSVTQIVSECETALTQLNRSLAI 316 (325)
T ss_pred cHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHhcCCCccccCCCccHHHHHHHHHHHHHHHHhhhHH
Confidence 345579999999999965543 35555555443332 3467889999999999999887765
No 19
>KOG0493|consensus
Probab=40.99 E-value=26 Score=25.45 Aligned_cols=22 Identities=23% Similarity=0.564 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHhhCCCCCHHH
Q psy4709 42 KEMIDWIRSEFKHNKHLSDETS 63 (86)
Q Consensus 42 ~~~~~~iR~eF~~nk~~td~~~ 63 (86)
.+-+++++.||++|+.+|..+.
T Consensus 255 aeQL~RLK~EF~enRYlTEqRR 276 (342)
T KOG0493|consen 255 AEQLQRLKAEFQENRYLTEQRR 276 (342)
T ss_pred HHHHHHHHHHHhhhhhHHHHHH
Confidence 5667899999999999996543
No 20
>PF04358 DsrC: DsrC like protein; InterPro: IPR007453 DsrC (P45573 from SWISSPROT) has been observed to co-purify with Desulphovibrio vulgaris dissimilatory sulphite reductase []. However, DsrC appears to be only loosely associated to the sulphite reductase, which suggests that it may not be an integral part of the dissimilatory sulphite reductase. Many proteins in this entry are found in organisms such as Escherichia coli and Haemophilus influenzae which do not contain dissimilatory sulphite reductases but can synthesise assimilatory sirohaem sulphite and nitrite reductases. It is speculated that DsrC may be involved in the assembly, folding or stabilisation of sirohaem proteins []. The strictly conserved cysteine in the C terminus suggests that DsrC may have a catalytic function in the metabolism of sulphur compounds []. Also included in this entry is TusE, a partner to TusBCD in a sulphur relay system for 2-thiouridine biosynthesis, a tRNA base modification process. Many proteins in this entry are annotated as the third (gamma) subunit of dissimilatory sulphite reductase ; PDB: 2V4J_F 2A5W_C 1SAU_A 1JI8_A 1YX3_A.
Probab=40.02 E-value=90 Score=19.26 Aligned_cols=29 Identities=10% Similarity=0.138 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHhhCCCCCHHHHHHHHHHH
Q psy4709 43 EMIDWIRSEFKHNKHLSDETSIKMMIQYG 71 (86)
Q Consensus 43 ~~~~~iR~eF~~nk~~td~~~i~~ll~~g 71 (86)
.++.++|+-|.++......+.+...+..-
T Consensus 45 ~vI~flR~~y~~~~~~P~~R~l~K~~~~~ 73 (109)
T PF04358_consen 45 EVIRFLRDYYQEYGVSPAIRMLIKALGED 73 (109)
T ss_dssp HHHHHHHHHHHHHSS---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCcHHHHHHHHhhh
Confidence 46789999999998777666666655554
No 21
>KOG3365|consensus
Probab=39.57 E-value=1.1e+02 Score=20.05 Aligned_cols=67 Identities=18% Similarity=0.198 Sum_probs=46.1
Q ss_pred hHHHHHHHHHHHHHHhhCCCCh-hHHHHHHHHHHHHHHhhCCCCCH---------HHHHHHHHHHHHHHHHHHHhhh
Q psy4709 17 LRAEVLGLYKTFLRTAKEIPDE-SSRKEMIDWIRSEFKHNKHLSDE---------TSIKMMIQYGQRSLKEVESSVS 83 (86)
Q Consensus 17 ~r~~vl~LYR~~LR~~~~~~~~-~~r~~~~~~iR~eF~~nk~~td~---------~~i~~ll~~g~~~l~~l~~~~~ 83 (86)
.+.+...+|-.+|.....+|.+ .+|.+.-+..++...--+...|- ..|++.+.++..+|+..+.++.
T Consensus 49 ~~~rl~~ly~kil~~~eqIpkn~ayRk~Tesit~~kLa~~k~E~d~K~ledql~gGqIEE~i~qa~~el~m~~k~~~ 125 (145)
T KOG3365|consen 49 PHERLRDLYTKILDVLEQIPKNAAYRKYTESITNQKLAMLKAEPDVKKLEDQLQGGQIEEVIEQAEAELNMGRKMFE 125 (145)
T ss_pred HHHHHHHHHHHhHHHHHHcchhhhhhHHHHHHHHHHHHHHHcchHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhhc
Confidence 3567889999999999999973 25666665555544444444443 3466778888888888777653
No 22
>KOG1547|consensus
Probab=35.01 E-value=62 Score=23.59 Aligned_cols=35 Identities=17% Similarity=0.310 Sum_probs=26.3
Q ss_pred HHHHHHHHHHhhCCCC--------hhHHHHHHHHHHHHHHhhC
Q psy4709 22 LGLYKTFLRTAKEIPD--------ESSRKEMIDWIRSEFKHNK 56 (86)
Q Consensus 22 l~LYR~~LR~~~~~~~--------~~~r~~~~~~iR~eF~~nk 56 (86)
+...+++-+.+.-.|. -..|..|+++|+++|++|-
T Consensus 175 ieflkrLt~vvNvvPVIakaDtlTleEr~~FkqrI~~el~~~~ 217 (336)
T KOG1547|consen 175 IEFLKRLTEVVNVVPVIAKADTLTLEERSAFKQRIRKELEKHG 217 (336)
T ss_pred HHHHHHHhhhheeeeeEeecccccHHHHHHHHHHHHHHHHhcC
Confidence 4455666666666663 3578999999999999985
No 23
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=34.27 E-value=1.3e+02 Score=19.54 Aligned_cols=34 Identities=21% Similarity=0.607 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhh
Q psy4709 18 RAEVLGLYKTFLRTAKEIPDESSRKEMIDWIRSEFKHN 55 (86)
Q Consensus 18 r~~vl~LYR~~LR~~~~~~~~~~r~~~~~~iR~eF~~n 55 (86)
|.+=+..-+..|+ .+|. +.+++..++.++-|+..
T Consensus 3 k~efL~~L~~~L~---~lp~-~e~~e~l~~Y~e~f~d~ 36 (181)
T PF08006_consen 3 KNEFLNELEKYLK---KLPE-EEREEILEYYEEYFDDA 36 (181)
T ss_pred HHHHHHHHHHHHH---cCCH-HHHHHHHHHHHHHHHHh
Confidence 3444555555555 5775 57788899999999753
No 24
>PRK10292 hypothetical protein; Provisional
Probab=32.57 E-value=1e+02 Score=17.61 Aligned_cols=45 Identities=13% Similarity=0.232 Sum_probs=32.2
Q ss_pred HHHHHHHHHHhh-------CCCChhHHHHHHHHHHHHHHhhCCCCCHHHHHH
Q psy4709 22 LGLYKTFLRTAK-------EIPDESSRKEMIDWIRSEFKHNKHLSDETSIKM 66 (86)
Q Consensus 22 l~LYR~~LR~~~-------~~~~~~~r~~~~~~iR~eF~~nk~~td~~~i~~ 66 (86)
=.+|+.+.|..- .......+..+..-+|++..+++...++.+++.
T Consensus 8 d~lY~EmCRVVGdvVl~m~~lG~e~k~i~Ia~vlrTa~a~~r~~rs~~~~qa 59 (69)
T PRK10292 8 DELYREMCRVVGKVVLEMRDLGQEPKHIVIAGVLRTALANKRIQRSELEKQA 59 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCcchhhHHHHHHHHHHhcccccCHHHHHH
Confidence 357888888663 333333457788899999999998887776654
No 25
>PF04695 Pex14_N: Peroxisomal membrane anchor protein (Pex14p) conserved region; InterPro: IPR006785 This conserved region defines a group of peroxisomal membrane anchor proteins which bind the PTS1 (peroxisomal targeting signal) receptor and are required for the import of PTS1-containing proteins into peroxisomes. Loss of functional Pex14p results in defects in both the PTS1 and PTS2-dependent import pathways. Deletion analysis of this conserved region implicates it in selective peroxisome degradation. In the majority of members this region is situated at the N terminus of the protein [, ].; GO: 0005777 peroxisome, 0016020 membrane; PDB: 2W85_A 2W84_A 3FF5_B.
Probab=32.39 E-value=68 Score=20.30 Aligned_cols=26 Identities=19% Similarity=0.226 Sum_probs=17.3
Q ss_pred HHHHHHhhCCCCCHHHHHHHHHHHHHH
Q psy4709 48 IRSEFKHNKHLSDETSIKMMIQYGQRS 74 (86)
Q Consensus 48 iR~eF~~nk~~td~~~i~~ll~~g~~~ 74 (86)
=|-+|=+.|++| .++|+.++..+...
T Consensus 25 ~k~~FL~sKGLt-~~EI~~al~~a~~~ 50 (136)
T PF04695_consen 25 KKIAFLESKGLT-EEEIDEALGRAGSP 50 (136)
T ss_dssp HHHHHHHHCT---HHHHHHHHHHHT--
T ss_pred HHHHHHHcCCCC-HHHHHHHHHhcCCc
Confidence 467888899999 67788888876543
No 26
>TIGR00754 bfr bacterioferritin. Bacterioferritin is a homomultimer most species. In Neisseria gonorrhoeae, Synechocystis PCC6803, Magnetospirillum magnetotacticum, and Pseudomonas aeruginosa, two types of subunit are found in a heteromultimeric complex, with each species having one member of each type. At present, both types of subunit are including in this single model.
Probab=30.67 E-value=1.4e+02 Score=18.82 Aligned_cols=25 Identities=32% Similarity=0.311 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHhhCCCChhHHHH
Q psy4709 19 AEVLGLYKTFLRTAKEIPDESSRKE 43 (86)
Q Consensus 19 ~~vl~LYR~~LR~~~~~~~~~~r~~ 43 (86)
..|+..|+.++..|....|+.....
T Consensus 95 ~~~~~~~~e~i~~A~~~~D~~t~~l 119 (157)
T TIGR00754 95 LDVLNRLKEAIAYAEEVRDYVSRDL 119 (157)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 3677777777777777666555433
No 27
>KOG4274|consensus
Probab=30.28 E-value=2e+02 Score=23.39 Aligned_cols=34 Identities=18% Similarity=0.375 Sum_probs=26.3
Q ss_pred hCCCChhHHHHHHHHHHHHHHhhCCC--CCHHHHHH
Q psy4709 33 KEIPDESSRKEMIDWIRSEFKHNKHL--SDETSIKM 66 (86)
Q Consensus 33 ~~~~~~~~r~~~~~~iR~eF~~nk~~--td~~~i~~ 66 (86)
.+|++..+|+.++.+|.++.++|..- .|....+.
T Consensus 4 eDW~S~kFRq~vIsried~l~~n~q~~~k~a~~mE~ 39 (742)
T KOG4274|consen 4 EDWPSPKFRQHVISRIEDELRKNGQAHSKSAKDMES 39 (742)
T ss_pred cccccHHHHHHHHHHhhhhhhhhhhccCcchHHHHH
Confidence 47998889999999999999998743 45555543
No 28
>PF00393 6PGD: 6-phosphogluconate dehydrogenase, C-terminal domain; InterPro: IPR006114 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequences are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This entry represents the C-terminal all-alpha domain of 6-phosphogluconate dehydrogenase. The domain contains two structural repeats of 5 helices each. The NAD-binding domain is described in IPR006115 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0050661 NADP binding, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 2ZYD_A 2ZYA_A 3FWN_A 2JKV_E 2ZYG_B 4E21_A 1PGJ_A 1PGP_A 1PGN_A 2PGD_A ....
Probab=30.23 E-value=64 Score=23.45 Aligned_cols=22 Identities=32% Similarity=0.383 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHhhCCCCCH
Q psy4709 40 SRKEMIDWIRSEFKHNKHLSDE 61 (86)
Q Consensus 40 ~r~~~~~~iR~eF~~nk~~td~ 61 (86)
.|..++..|.+.|+++.++++.
T Consensus 190 IRs~lL~~i~~af~~~p~l~nL 211 (291)
T PF00393_consen 190 IRSWLLDDIAEAFKENPDLENL 211 (291)
T ss_dssp T-BTHHHHHHHHHHH-TT-STG
T ss_pred HHHHHHHHHHHHHHhCCChhcc
Confidence 4677899999999999887765
No 29
>TIGR02690 resist_ArsH arsenical resistance protein ArsH. Members of this protein family occur in arsenate resistance operons that include at least two different types of arsenate reductase. ArsH is not required for arsenate resistance in some systems. This family belongs to the larger family of NADPH-dependent FMN reductases (Pfam model pfam03358). The function of ArsH is not known.
Probab=29.27 E-value=2e+02 Score=19.89 Aligned_cols=52 Identities=6% Similarity=0.066 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHH
Q psy4709 20 EVLGLYKTFLRTAKEIPDESSRKEMIDWIRSEFKHNKHLSDETSIKMMIQYGQR 73 (86)
Q Consensus 20 ~vl~LYR~~LR~~~~~~~~~~r~~~~~~iR~eF~~nk~~td~~~i~~ll~~g~~ 73 (86)
....--|.+++...-+.-+. ......+.++|+.+..++|+..++.+-...+.
T Consensus 144 ra~~~LR~vl~~l~a~v~p~--~v~i~~a~~~fd~~G~l~d~~~~~~l~~~l~~ 195 (219)
T TIGR02690 144 NAVNILRRLGRWMRMPTIPN--QSSVAKAFDEFDEAGRMKPSDYYDRVVDVMEE 195 (219)
T ss_pred HHHHHHHHHHHHCCCccccc--hhhhhhhHhhcCcCCCCCCHHHHHHHHHHHHH
Confidence 45666788888876665432 55677788889999899999877766654433
No 30
>TIGR00188 rnpA ribonuclease P protein component, eubacterial. The yeast mitochondrial RNase P protein component gene RPM2 has no obvious sequence similarity to rnpA, but resembles eukaryotic nuclear RNase P instead.
Probab=29.15 E-value=71 Score=19.17 Aligned_cols=20 Identities=20% Similarity=0.398 Sum_probs=16.0
Q ss_pred hhHHHHHHHHHHHHHHhhCC
Q psy4709 38 ESSRKEMIDWIRSEFKHNKH 57 (86)
Q Consensus 38 ~~~r~~~~~~iR~eF~~nk~ 57 (86)
-..|+.+.+.+|+-|+.|.+
T Consensus 54 AV~RNriKR~lRe~~R~~~~ 73 (105)
T TIGR00188 54 AVERNRIKRLIREVFRERQE 73 (105)
T ss_pred hhHHHHHHHHHHHHHHHhhc
Confidence 45678888999999988865
No 31
>PRK05629 hypothetical protein; Validated
Probab=28.39 E-value=2.2e+02 Score=20.20 Aligned_cols=59 Identities=15% Similarity=0.232 Sum_probs=39.1
Q ss_pred HHHHHHHHHHhhCCCC-hhHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy4709 22 LGLYKTFLRTAKEIPD-ESSRKEMIDWIRSEFKHNKHLSDETSIKMMIQYGQRSLKEVES 80 (86)
Q Consensus 22 l~LYR~~LR~~~~~~~-~~~r~~~~~~iR~eF~~nk~~td~~~i~~ll~~g~~~l~~l~~ 80 (86)
-.+|+.+-+.+--++- .-+...+..+|++.|.++.---+++.++.|+......+..+..
T Consensus 108 kk~~K~l~k~~~~ve~~~~~~~~l~~wi~~~~~~~g~~i~~~A~~~L~~~~g~dl~~l~~ 167 (318)
T PRK05629 108 KSMVPKLEKIAVVHEAAKLKPRERPGWVTQEFKNHGVRPTPDVVHALLEGVGSDLRELAS 167 (318)
T ss_pred hHHHHHHHhcceEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHCccHHHHHH
Confidence 4567765555532221 1124678899999998887556789998888876666655544
No 32
>COG4086 Predicted secreted protein [Function unknown]
Probab=27.82 E-value=2.3e+02 Score=20.81 Aligned_cols=34 Identities=12% Similarity=0.228 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHH
Q psy4709 41 RKEMIDWIRSEFKHNKHLSDETSIKMMIQYGQRSL 75 (86)
Q Consensus 41 r~~~~~~iR~eF~~nk~~td~~~i~~ll~~g~~~l 75 (86)
+..+...|+.++-+++. .||..|+....+..+.+
T Consensus 193 ~a~l~~~VK~~~a~~~~-~~~~dirkvv~dv~~~y 226 (299)
T COG4086 193 AAALMAEVKEEVAKQKV-DDPADIRKVVDDVANNY 226 (299)
T ss_pred HHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHHc
Confidence 57788999999999975 78999999888876654
No 33
>PF00825 Ribonuclease_P: Ribonuclease P; InterPro: IPR000100 Ribonuclease P (3.1.26.5 from EC) (RNase P) [, , ] is a site specific endonuclease that generates mature tRNAs by catalysing the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. In bacteria RNase P is known to be composed of two components: a large RNA (about 400 base pairs) encoded by rnpB, and a small protein (119 to 133 amino acids) encoded by rnpA. The RNA moiety of RNase P carries the catalytic activity; the protein component plays an auxiliary, but essential, role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. The sequence of rnpA is not highly conserved, however there is, in the central part of the protein, a conserved basic region.; GO: 0000049 tRNA binding, 0004526 ribonuclease P activity, 0008033 tRNA processing; PDB: 1D6T_A 1A6F_A 2LJP_A 1NZ0_C 3Q1Q_A 3Q1R_A.
Probab=27.68 E-value=1.2e+02 Score=18.24 Aligned_cols=21 Identities=24% Similarity=0.352 Sum_probs=16.0
Q ss_pred hhHHHHHHHHHHHHHHhhCCC
Q psy4709 38 ESSRKEMIDWIRSEFKHNKHL 58 (86)
Q Consensus 38 ~~~r~~~~~~iR~eF~~nk~~ 58 (86)
-..|+.+.+.+|+.|+.|.+.
T Consensus 56 AV~RNriKR~lRe~~R~~~~~ 76 (111)
T PF00825_consen 56 AVKRNRIKRRLREAFRLNKPE 76 (111)
T ss_dssp HHHHHHHHHHHHHHHHHCTTT
T ss_pred hhHHHHHHHHHHHHHHHHHhh
Confidence 456788888888888888764
No 34
>smart00139 MyTH4 Domain in Myosin and Kinesin Tails. Domain present twice in myosin-VIIa, and also present in 3 other myosins.
Probab=27.48 E-value=1.3e+02 Score=19.26 Aligned_cols=34 Identities=21% Similarity=0.361 Sum_probs=27.1
Q ss_pred CCCCCccChhhhhhHHHHHHHHHHHHHHhhCCCC
Q psy4709 4 KLPKSTLNFRQFLLRAEVLGLYKTFLRTAKEIPD 37 (86)
Q Consensus 4 ~l~~~~~s~~~~~~r~~vl~LYR~~LR~~~~~~~ 37 (86)
-|+.|.+.+.........+.+|+.+++...+.|.
T Consensus 5 pi~~pLl~~~~~~~~~~A~~iF~~Il~ymgd~~~ 38 (144)
T smart00139 5 PIKTSLLKLESDELQKEAVKIFKAILKFMGDLPL 38 (144)
T ss_pred CCCcccccCCCcHHHHHHHHHHHHHHHHhcCCCC
Confidence 4566777666666888999999999999987664
No 35
>PF05635 23S_rRNA_IVP: 23S rRNA-intervening sequence protein; InterPro: IPR008815 This family consists of bacterial proteins encoded within an intervening sequence present within some 23S rRNA genes[]. The function of these proteins is not known, but a structural study indicates that each momonmer folds into an antiparallel four-helix bundle, while the overall protein is a homopentamer with a toroid-shaped structure containing a tapered central channel [].; PDB: 2GSC_E 2RLD_D.
Probab=27.38 E-value=1.4e+02 Score=17.72 Aligned_cols=73 Identities=19% Similarity=0.271 Sum_probs=39.5
Q ss_pred ChhhhhhHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHH-------HHHH-hhCCCCCHHHHHHHHHHHHHHHHHHHHhh
Q psy4709 11 NFRQFLLRAEVLGLYKTFLRTAKEIPDESSRKEMIDWIR-------SEFK-HNKHLSDETSIKMMIQYGQRSLKEVESSV 82 (86)
Q Consensus 11 s~~~~~~r~~vl~LYR~~LR~~~~~~~~~~r~~~~~~iR-------~eF~-~nk~~td~~~i~~ll~~g~~~l~~l~~~~ 82 (86)
+++....=+....|.-.+.+.++.||... +-.+.++++ .... .+...+ +..-...+..+...+.+++.++
T Consensus 2 ~f~~L~v~q~a~~l~~~i~~~~~~~p~~e-~~~l~~Qi~raa~SI~~NIaEg~~r~s-~~d~~~~l~iA~~s~~E~~~~L 79 (110)
T PF05635_consen 2 DFEKLEVWQKAMELALEIYELTKSFPKEE-KFSLRDQIRRAATSIPANIAEGNGRRS-KKDFIRFLYIARGSLAELRYWL 79 (110)
T ss_dssp CGGG-HHHHHHHHHHHHHHHHHCCCHCCG-TTTHHHHHHHHHHHHHHHHHHHHTSSS-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHHHHHHHHHHhCcHhh-hhhHHHHHHHHHHHHHHHHHHHHccCC-HHHHHHHHHHHHHHHHHHHHHH
Confidence 34555556677888888888888988732 111222221 1121 112223 3334444555777777777766
Q ss_pred hhc
Q psy4709 83 SLI 85 (86)
Q Consensus 83 ~~~ 85 (86)
.+.
T Consensus 80 ~~a 82 (110)
T PF05635_consen 80 ELA 82 (110)
T ss_dssp HHH
T ss_pred HHH
Confidence 553
No 36
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=26.98 E-value=97 Score=23.76 Aligned_cols=22 Identities=27% Similarity=0.407 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHhhCCCCCH
Q psy4709 40 SRKEMIDWIRSEFKHNKHLSDE 61 (86)
Q Consensus 40 ~r~~~~~~iR~eF~~nk~~td~ 61 (86)
.|..+++.|.+.|++|.++.|.
T Consensus 363 Irs~lL~~i~~a~~~~~~l~~l 384 (467)
T TIGR00873 363 IRSGFLDKITKAFAENPDLANL 384 (467)
T ss_pred eeHhHHHHHHHHHHcCCChhhh
Confidence 4688999999999999876663
No 37
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=26.84 E-value=94 Score=23.88 Aligned_cols=22 Identities=32% Similarity=0.434 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHhhCCCCCH
Q psy4709 40 SRKEMIDWIRSEFKHNKHLSDE 61 (86)
Q Consensus 40 ~r~~~~~~iR~eF~~nk~~td~ 61 (86)
.|..+++.|++.|.+|.++.|.
T Consensus 369 IRs~lL~~i~~a~~~~~~l~nl 390 (470)
T PTZ00142 369 IRAVFLDRIKNAFKKNPQLDLL 390 (470)
T ss_pred eeHhHHHHHHHHHhcCCChhhh
Confidence 4789999999999999876653
No 38
>KOG2713|consensus
Probab=26.03 E-value=1.6e+02 Score=21.88 Aligned_cols=28 Identities=18% Similarity=0.292 Sum_probs=18.0
Q ss_pred HHHHHHHHhhCCCCCHHHHHHHHHHHHHHH
Q psy4709 46 DWIRSEFKHNKHLSDETSIKMMIQYGQRSL 75 (86)
Q Consensus 46 ~~iR~eF~~nk~~td~~~i~~ll~~g~~~l 75 (86)
.=||++|++..+ +|+.+...+++|-++.
T Consensus 300 ~PIr~~fee~~~--~~~~l~kvl~~GaekA 327 (347)
T KOG2713|consen 300 APIRTEFEELIN--EPEYLDKVLEEGAEKA 327 (347)
T ss_pred ccHHHHHHHHhc--CHHHHHHHHHHhHHHH
Confidence 357899998854 5666666666554443
No 39
>KOG0810|consensus
Probab=25.77 E-value=2.7e+02 Score=20.30 Aligned_cols=57 Identities=19% Similarity=0.219 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHhhCCCC--hhHHHHHHHHHHHHHHhhCC-CCCHHHHHHHHHHHHHH
Q psy4709 18 RAEVLGLYKTFLRTAKEIPD--ESSRKEMIDWIRSEFKHNKH-LSDETSIKMMIQYGQRS 74 (86)
Q Consensus 18 r~~vl~LYR~~LR~~~~~~~--~~~r~~~~~~iR~eF~~nk~-~td~~~i~~ll~~g~~~ 74 (86)
+.+.-.+++.+......|.. .++++....+|+..+..-.. .++.+.|+.+++.|..+
T Consensus 122 rtq~~~~~kkf~~~M~~f~~~~~~~r~~~k~~i~Rql~i~~~~~~~de~ie~~ie~g~~~ 181 (297)
T KOG0810|consen 122 RTQTSALSKKLKELMNEFNRTQSKYREEYKERIQRQLFIVGGEETTDEEIEEMIESGGSE 181 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCcCChHHHHHHHHCCChH
Confidence 34444555777776666643 24567777777776654444 78889999998887543
No 40
>PRK01903 rnpA ribonuclease P; Reviewed
Probab=24.67 E-value=75 Score=20.20 Aligned_cols=22 Identities=23% Similarity=0.533 Sum_probs=16.6
Q ss_pred CChhHHHHHHHHHHHHHHhhCC
Q psy4709 36 PDESSRKEMIDWIRSEFKHNKH 57 (86)
Q Consensus 36 ~~~~~r~~~~~~iR~eF~~nk~ 57 (86)
..-..|+-+.+.+|+.|+.|++
T Consensus 62 g~AV~RNRiKR~lREa~R~~~~ 83 (133)
T PRK01903 62 PRAVKRNRIKRLMREAYRLEKH 83 (133)
T ss_pred CchhhhhHHHHHHHHHHHHhHh
Confidence 3334578888899999988876
No 41
>PRK14865 rnpA ribonuclease P; Provisional
Probab=24.22 E-value=98 Score=18.95 Aligned_cols=19 Identities=21% Similarity=0.354 Sum_probs=15.0
Q ss_pred hHHHHHHHHHHHHHHhhCC
Q psy4709 39 SSRKEMIDWIRSEFKHNKH 57 (86)
Q Consensus 39 ~~r~~~~~~iR~eF~~nk~ 57 (86)
..|+-+.+.+|+-|+.|.+
T Consensus 59 V~RNRiKR~lRE~~R~~~~ 77 (116)
T PRK14865 59 VVRNRIKRLVREFYRLNKS 77 (116)
T ss_pred hhHHHHHHHHHHHHHHhhc
Confidence 4578888888999987765
No 42
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=24.00 E-value=1.2e+02 Score=23.27 Aligned_cols=22 Identities=18% Similarity=0.364 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHhhCCCCCH
Q psy4709 40 SRKEMIDWIRSEFKHNKHLSDE 61 (86)
Q Consensus 40 ~r~~~~~~iR~eF~~nk~~td~ 61 (86)
.|..+++.|.+.|++|.++.+.
T Consensus 355 IRs~lL~~i~~a~~~~~~l~nl 376 (459)
T PRK09287 355 IRAQFLQKITDAYEANPDLANL 376 (459)
T ss_pred EeHHHHHHHHHHHHhCCCchhh
Confidence 4789999999999999887663
No 43
>PRK00499 rnpA ribonuclease P; Reviewed
Probab=24.00 E-value=88 Score=19.04 Aligned_cols=19 Identities=26% Similarity=0.406 Sum_probs=13.5
Q ss_pred hHHHHHHHHHHHHHHhhCC
Q psy4709 39 SSRKEMIDWIRSEFKHNKH 57 (86)
Q Consensus 39 ~~r~~~~~~iR~eF~~nk~ 57 (86)
..|+-+.+.+|+-|+.|.+
T Consensus 52 V~RNriKR~lRE~~R~~~~ 70 (114)
T PRK00499 52 VVRNRIKRLIRESFRELKD 70 (114)
T ss_pred hhHhHHHHHHHHHHHHhhh
Confidence 4567777777777777754
No 44
>KOG2908|consensus
Probab=23.79 E-value=3.3e+02 Score=20.67 Aligned_cols=62 Identities=21% Similarity=0.320 Sum_probs=34.9
Q ss_pred hHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhCC-----------------CCCHHHHHHHHHHHHHHHHHH
Q psy4709 17 LRAEVLGLYKTFLRTAKEIPDESSRKEMIDWIRSEFKHNKH-----------------LSDETSIKMMIQYGQRSLKEV 78 (86)
Q Consensus 17 ~r~~vl~LYR~~LR~~~~~~~~~~r~~~~~~iR~eF~~nk~-----------------~td~~~i~~ll~~g~~~l~~l 78 (86)
.+---+++-.=++-.++++.|.+.--.+...|.+.+...+. +.|...++.++.+++..++.+
T Consensus 70 ~kINplslvei~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~ 148 (380)
T KOG2908|consen 70 TKINPLSLVEILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSL 148 (380)
T ss_pred hccChHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcc
Confidence 33333444455555666666654444566777777777654 245555555555555555443
No 45
>PRK00730 rnpA ribonuclease P; Reviewed
Probab=23.29 E-value=94 Score=20.09 Aligned_cols=19 Identities=26% Similarity=0.588 Sum_probs=14.2
Q ss_pred hHHHHHHHHHHHHHHhhCC
Q psy4709 39 SSRKEMIDWIRSEFKHNKH 57 (86)
Q Consensus 39 ~~r~~~~~~iR~eF~~nk~ 57 (86)
..|+-+.+.+|+.|+.+.+
T Consensus 60 V~RNRiKR~lREafR~~~~ 78 (138)
T PRK00730 60 HQRNRFKRIVREAFRHVRH 78 (138)
T ss_pred hhHHHHHHHHHHHHHHhhc
Confidence 4577788888888887754
No 46
>PF10273 WGG: Pre-rRNA-processing protein TSR2; InterPro: IPR019398 The pre-rRNA-processing protein TSR2 is required for 20S pre-rRNA processing []. This family contains a distinctive WGG motif.
Probab=22.32 E-value=1.7e+02 Score=16.88 Aligned_cols=32 Identities=13% Similarity=0.090 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHH
Q psy4709 40 SRKEMIDWIRSEFKHNKHLSDETSIKMMIQYGQ 72 (86)
Q Consensus 40 ~r~~~~~~iR~eF~~nk~~td~~~i~~ll~~g~ 72 (86)
.+.++...|-+-|..++.+. +..|+.+|.+.-
T Consensus 32 K~~~l~~~i~~~f~~~~~~~-~~~le~~L~~~m 63 (82)
T PF10273_consen 32 KADWLAEVIVDWFTENKDPD-ADDLEDFLEDIM 63 (82)
T ss_pred HHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHH
Confidence 46888999999999987555 888988887764
No 47
>PRK00588 rnpA ribonuclease P; Reviewed
Probab=22.09 E-value=1e+02 Score=19.10 Aligned_cols=20 Identities=10% Similarity=0.072 Sum_probs=15.3
Q ss_pred hhHHHHHHHHHHHHHHhhCC
Q psy4709 38 ESSRKEMIDWIRSEFKHNKH 57 (86)
Q Consensus 38 ~~~r~~~~~~iR~eF~~nk~ 57 (86)
-..|+-+.+.+|+-|+.+.+
T Consensus 56 AV~RNRiKR~lRE~~R~~~~ 75 (118)
T PRK00588 56 AVERHRVARRLRHVARPILK 75 (118)
T ss_pred hhHHHHHHHHHHHHHHHhhh
Confidence 34678888888888888754
No 48
>COG1647 Esterase/lipase [General function prediction only]
Probab=21.98 E-value=61 Score=23.01 Aligned_cols=70 Identities=17% Similarity=0.180 Sum_probs=38.5
Q ss_pred CccChhhhhhHHHHHHHHHHHHHHh---hCCCChhHHHHHHHHHHHHHHhhCC--CCCHHHHHHHHHHHHHHHHHHHHhh
Q psy4709 8 STLNFRQFLLRAEVLGLYKTFLRTA---KEIPDESSRKEMIDWIRSEFKHNKH--LSDETSIKMMIQYGQRSLKEVESSV 82 (86)
Q Consensus 8 ~~~s~~~~~~r~~vl~LYR~~LR~~---~~~~~~~~r~~~~~~iR~eF~~nk~--~td~~~i~~ll~~g~~~l~~l~~~~ 82 (86)
.++.++-.......-..|..+|+.+ +.++..+ -..+.++..+-.. .+--.+...++..+...++.|..-+
T Consensus 110 ~iv~m~a~~~~k~~~~iie~~l~y~~~~kk~e~k~-----~e~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~~~~I~~pt 184 (243)
T COG1647 110 KIVPMCAPVNVKSWRIIIEGLLEYFRNAKKYEGKD-----QEQIDKEMKSYKDTPMTTTAQLKKLIKDARRSLDKIYSPT 184 (243)
T ss_pred ceeeecCCcccccchhhhHHHHHHHHHhhhccCCC-----HHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhhhhcccch
Confidence 3335554444344444555555544 4444322 2355666665553 2233577888888888888876544
No 49
>cd00907 Bacterioferritin Bacterioferritin, ferritin-like diiron-binding domain. Bacterioferritins, also known as cytochrome b1, are members of a broad superfamily of ferritin-like diiron-carboxylate proteins. Similar to ferritin in architecture, Bfr forms an oligomer of 24 subunits that assembles to form a hollow sphere with 432 symmetry. Up to 12 heme cofactor groups (iron protoporphyrin IX or coproporphyrin III) are bound between dimer pairs. The role of the heme is unknown, although it may be involved in mediating iron-core reduction and iron release. Each subunit is composed of a four-helix bundle which carries a diiron ferroxidase center; it is here that initial oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical products, and storage of ferric-hydroxyphosphate at the core. Some bacterioferritins are composed of two subunit types, one conferring heme-binding ability (alpha) and the other (beta) best
Probab=21.92 E-value=2.1e+02 Score=17.65 Aligned_cols=36 Identities=17% Similarity=0.188 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhh
Q psy4709 19 AEVLGLYKTFLRTAKEIPDESSRKEMIDWIRSEFKHN 55 (86)
Q Consensus 19 ~~vl~LYR~~LR~~~~~~~~~~r~~~~~~iR~eF~~n 55 (86)
..++..|+.++..+..-.|+..... ...+-.+.++|
T Consensus 94 ~~~~~~y~~~~~~A~~~~D~~t~~~-l~~~~~~e~~h 129 (153)
T cd00907 94 YEAIAALNEAIALCEEVGDYVSRDL-LEEILEDEEEH 129 (153)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHHHHH
Confidence 3677778888877776666554333 33444444444
No 50
>PRK00396 rnpA ribonuclease P; Reviewed
Probab=21.50 E-value=1.3e+02 Score=19.09 Aligned_cols=20 Identities=30% Similarity=0.556 Sum_probs=15.9
Q ss_pred hhHHHHHHHHHHHHHHhhCC
Q psy4709 38 ESSRKEMIDWIRSEFKHNKH 57 (86)
Q Consensus 38 ~~~r~~~~~~iR~eF~~nk~ 57 (86)
-..|+-+.+.+|+.|+.|++
T Consensus 60 AV~RNRiKR~lRE~fR~~~~ 79 (130)
T PRK00396 60 AVDRNRLKRLIRESFRLNQH 79 (130)
T ss_pred HhHHHHHHHHHHHHHHHhhc
Confidence 34678888999999998875
No 51
>PRK13415 flagella biosynthesis protein FliZ; Provisional
Probab=21.27 E-value=1.3e+02 Score=21.01 Aligned_cols=25 Identities=16% Similarity=0.264 Sum_probs=18.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHh
Q psy4709 57 HLSDETSIKMMIQYGQRSLKEVESS 81 (86)
Q Consensus 57 ~~td~~~i~~ll~~g~~~l~~l~~~ 81 (86)
.++||++++.++.+-++.++.+...
T Consensus 139 Ei~d~~eve~il~~~e~~~~~~~~~ 163 (219)
T PRK13415 139 EIEDEKEIEEILAQHEERLESKAEW 163 (219)
T ss_pred ecCCHHHHHHHHHHHHHhhhhhhch
Confidence 3588889999988888777555444
No 52
>PRK12275 hypothetical protein; Reviewed
Probab=21.20 E-value=2e+02 Score=17.28 Aligned_cols=74 Identities=16% Similarity=0.241 Sum_probs=40.2
Q ss_pred ChhhhhhHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHH-------HHHhhCCCCCHHHHHHHHHHHHHHHHHHHHhhh
Q psy4709 11 NFRQFLLRAEVLGLYKTFLRTAKEIPDESSRKEMIDWIRS-------EFKHNKHLSDETSIKMMIQYGQRSLKEVESSVS 83 (86)
Q Consensus 11 s~~~~~~r~~vl~LYR~~LR~~~~~~~~~~r~~~~~~iR~-------eF~~nk~~td~~~i~~ll~~g~~~l~~l~~~~~ 83 (86)
+++....-++...|=..+...++.||.. .+-.+.++++. ...+...-..+..--..+..+...+.+++.++.
T Consensus 3 ~~~~L~v~qka~~l~~~i~~l~~~~P~~-e~~~L~~Qi~Rs~~Si~~NIaEg~~r~s~~~~~~~l~ia~~s~~E~~~~L~ 81 (116)
T PRK12275 3 DFEDLDVWKRSMKLAIEIYKLTKLFPDE-ERYGLTSQLRRAAVSIPSNIAEGYGRESKKDFIRFLYIALGSLAELETQLY 81 (116)
T ss_pred ChHhhHHHHHHHHHHHHHHHHHhcCChH-HHhhHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555556667777777788888888873 22222222221 111111111244445556667777777777766
Q ss_pred hc
Q psy4709 84 LI 85 (86)
Q Consensus 84 ~~ 85 (86)
++
T Consensus 82 la 83 (116)
T PRK12275 82 IA 83 (116)
T ss_pred HH
Confidence 54
No 53
>cd01052 DPSL DPS-like protein, ferritin-like diiron-binding domain. DPSL (DPS-like). DPSL is a phylogenetically distinct class within the ferritin-like superfamily, and similar in many ways to the DPS (DNA Protecting protein under Starved conditions) proteins. Like DPS, these proteins are expressed in response to oxidative stress, form dodecameric cage-like particles, preferentially utilize hydrogen peroxide in the controlled oxidation of iron, and possess a short N-terminal extension implicated in stabilizing cellular DNA. This domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. These proteins are distantly related to bacterial ferritins which assemble 24 monomers, each of which have a four-helix bundle with a fifth shorter helix at the C terminus and a diiron (ferroxidase) center. Ferritins contain a center where oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical
Probab=21.10 E-value=2.1e+02 Score=17.48 Aligned_cols=14 Identities=14% Similarity=0.294 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHhh
Q psy4709 20 EVLGLYKTFLRTAK 33 (86)
Q Consensus 20 ~vl~LYR~~LR~~~ 33 (86)
.++..|+.++..+.
T Consensus 107 ~~i~~~~~~~~~a~ 120 (148)
T cd01052 107 CAIKVYKELCDMTH 120 (148)
T ss_pred HHHHHHHHHHHHHc
Confidence 44555555555543
No 54
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=20.49 E-value=1.7e+02 Score=16.98 Aligned_cols=40 Identities=18% Similarity=0.344 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHhhCCCC-----CHHHHHHHHHHHHHHHHHHHHh
Q psy4709 42 KEMIDWIRSEFKHNKHLS-----DETSIKMMIQYGQRSLKEVESS 81 (86)
Q Consensus 42 ~~~~~~iR~eF~~nk~~t-----d~~~i~~ll~~g~~~l~~l~~~ 81 (86)
..+++.||.||+.-.... .....+.-+..--.+++.|+..
T Consensus 3 ~elLd~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~ 47 (79)
T PF08581_consen 3 NELLDAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQK 47 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 356778888887554421 1123333344444455555443
No 55
>PF08828 DSX_dimer: Doublesex dimerisation domain; InterPro: IPR014932 Doublesex (DSX) is a transcription factor that regulates somatic sexual differences in Drosophila. The structure has revealed a novel dimeric arrangement of ubiquitin-associated folds that has not previously been identified in a transcription factor []. ; PDB: 1ZV1_B 2JZ0_A 2JZ1_B.
Probab=20.43 E-value=97 Score=17.39 Aligned_cols=26 Identities=15% Similarity=0.151 Sum_probs=9.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhhhh
Q psy4709 59 SDETSIKMMIQYGQRSLKEVESSVSL 84 (86)
Q Consensus 59 td~~~i~~ll~~g~~~l~~l~~~~~~ 84 (86)
.|+++....|.+|+....++.++..+
T Consensus 36 ~D~eeA~rrI~E~~~~v~~~~~~~~~ 61 (62)
T PF08828_consen 36 ADVEEASRRIDEAKNVVNEYSRQHNL 61 (62)
T ss_dssp T-HHHHHHHHHH--------------
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 47888899999999988888776543
No 56
>PF06144 DNA_pol3_delta: DNA polymerase III, delta subunit; InterPro: IPR010372 DNA polymerase III, delta subunit (2.7.7.7 from EC) is required for, along with delta' subunit, the assembly of the processivity factor beta(2) onto primed DNA in the DNA polymerase III holoenzyme-catalysed reaction []. The delta subunit is also known as HolA.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication, 0009360 DNA polymerase III complex; PDB: 3GLG_F 1XXH_A 1JQL_B 3GLF_F 1JQJ_C 3GLI_F.
Probab=20.31 E-value=2e+02 Score=17.88 Aligned_cols=57 Identities=23% Similarity=0.356 Sum_probs=35.0
Q ss_pred HHHHHHHHhh--CCCChhHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHh
Q psy4709 24 LYKTFLRTAK--EIPDESSRKEMIDWIRSEFKHNKHLSDETSIKMMIQYGQRSLKEVESS 81 (86)
Q Consensus 24 LYR~~LR~~~--~~~~~~~r~~~~~~iR~eF~~nk~~td~~~i~~ll~~g~~~l~~l~~~ 81 (86)
+|+.+-+.+. .++.. .-..+..+|++.|+++.-.-||..++.|+......+..+.+-
T Consensus 108 ~~k~l~~~~~~~~~~~~-~~~~~~~~i~~~~~~~g~~i~~~a~~~L~~~~~~d~~~l~~E 166 (172)
T PF06144_consen 108 LYKALKKQAIVIECKKP-KEQELPRWIKERAKKNGLKIDPDAAQYLIERVGNDLSLLQNE 166 (172)
T ss_dssp HHHHHTTTEEEEEE-----TTTHHHHHHHHHHHTT-EE-HHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHhcccceEEecCC-CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhChHHHHHHHH
Confidence 5555554333 12222 225577899999998876668999999998877666666543
Done!