Query psy4709
Match_columns 86
No_of_seqs 108 out of 1004
Neff 7.4
Searched_HMMs 29240
Date Fri Aug 16 23:50:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4709.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4709hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b6x_A AVRRPS4, avirulence pro 87.6 2.3 8E-05 24.5 5.7 43 41-83 34-79 (90)
2 2ld7_A Histone deacetylase com 76.6 3.7 0.00013 24.1 3.8 58 13-73 23-80 (94)
3 2ke4_A CDC42-interacting prote 59.6 15 0.0005 21.5 3.9 70 12-81 8-77 (98)
4 1nh2_B Transcription initiatio 41.0 38 0.0013 17.5 6.6 45 20-78 4-48 (53)
5 1xl3_C Protein type A, secreti 39.6 55 0.0019 19.0 5.0 16 22-37 42-57 (92)
6 2w84_A Peroxisomal membrane pr 39.4 41 0.0014 18.6 3.4 23 48-71 37-59 (70)
7 1nvp_B Transcription initiatio 38.7 44 0.0015 17.5 6.7 46 19-78 7-52 (57)
8 4am5_A Bacterioferritin; metal 37.8 60 0.002 19.6 4.4 35 16-50 92-126 (159)
9 3gvy_A Bacterioferritin; iron 36.7 55 0.0019 19.5 4.1 31 20-50 96-126 (161)
10 2qqy_A Sigma B operon; dodecam 36.3 63 0.0022 18.7 4.4 26 20-45 99-124 (149)
11 1u6h_B Talin; protein-protein 35.3 26 0.00089 16.2 1.9 26 60-85 1-26 (31)
12 3uoi_A Bacterioferritin, BFR; 35.1 71 0.0024 19.0 4.4 32 19-50 97-128 (161)
13 3ff5_A PEX14P, peroxisomal bio 34.4 38 0.0013 17.7 2.6 22 48-70 32-53 (54)
14 1a6f_A RNAse P protein, ribonu 34.2 48 0.0017 19.5 3.5 20 38-57 57-76 (119)
15 1rm1_C Transcription initiatio 31.5 1.3E+02 0.0045 20.9 7.2 47 19-79 4-50 (286)
16 2yy5_A Tryptophanyl-tRNA synth 30.9 92 0.0032 21.8 5.0 28 44-75 298-325 (348)
17 1nz0_A Ribonuclease P protein 30.1 48 0.0016 19.4 2.9 21 38-58 58-78 (118)
18 1nfv_A Bacterioferritin; 24 su 29.9 93 0.0032 18.9 4.4 31 19-49 100-130 (179)
19 3r2k_A Bacterioferritin, BFR; 29.7 89 0.003 18.4 4.4 37 19-55 94-130 (154)
20 2ljp_A Ribonuclease P protein 29.3 57 0.0019 19.1 3.2 22 36-57 57-78 (119)
21 3fvb_A Bacterioferritin; niaid 29.3 68 0.0023 19.9 3.7 32 19-50 116-147 (182)
22 1d6t_A Ribonuclease P, RNAse P 29.2 46 0.0016 19.5 2.7 20 38-57 56-75 (117)
23 2jz1_A Protein doublesex; sex 28.8 83 0.0028 17.7 3.6 26 59-84 39-64 (80)
24 1z7l_A Ubiquitin-activating en 28.2 65 0.0022 22.0 3.7 39 30-70 17-64 (276)
25 1ji5_A DLP-1; dodecamer, four- 27.4 96 0.0033 18.0 4.4 26 20-45 99-124 (142)
26 2y3q_A Bacterioferritin; metal 27.0 99 0.0034 18.1 4.4 36 19-55 95-130 (158)
27 3h3m_A Flagellar protein FLIT; 26.1 21 0.00072 21.7 0.8 30 3-32 2-31 (126)
28 1zv1_A Doublesex protein; UBA 25.7 87 0.003 16.9 3.7 26 59-84 39-64 (65)
29 4gwg_A 6-phosphogluconate dehy 24.9 55 0.0019 24.1 3.0 22 40-61 369-390 (484)
30 1tjo_A Iron-rich DPSA-homolog 24.5 1.3E+02 0.0045 18.6 4.4 30 20-49 128-157 (182)
31 3qb9_A Bacterioferritin, BFR; 24.3 1.2E+02 0.0042 18.2 4.4 32 19-50 97-128 (174)
32 2c41_A DPS family DNA-binding 23.8 1.2E+02 0.0042 18.1 4.4 29 20-48 108-136 (158)
33 2vxx_A Starvation induced DNA 23.4 1E+02 0.0034 19.3 3.7 30 19-48 126-155 (192)
34 3or1_C Sulfite reductase GAMA; 22.6 1.1E+02 0.0037 18.0 3.5 29 42-70 47-75 (105)
35 1n1q_A DPS protein; four-helix 22.5 1.3E+02 0.0043 17.7 4.4 26 20-45 106-131 (149)
36 3sl9_C B-cell CLL/lymphoma 9 p 22.5 90 0.0031 16.0 3.6 30 6-37 6-35 (55)
37 3n9i_A Tryptophanyl-tRNA synth 22.3 2.1E+02 0.0071 20.1 5.6 34 43-78 295-328 (346)
38 1jgc_A Bacterioferritin, BFR; 21.9 1.2E+02 0.0041 17.7 3.7 36 19-55 95-130 (161)
39 1i6k_A TRPRS, tryptophanyl-tRN 21.8 1.6E+02 0.0055 20.3 4.8 38 44-84 279-324 (328)
40 1jig_A DLP-2; dodecamer, four- 21.7 1.3E+02 0.0044 17.5 4.4 25 20-44 103-127 (146)
41 1whu_A Polynucleotide phosphor 21.3 1.2E+02 0.0042 17.1 9.7 58 15-72 16-79 (104)
42 2d5k_A DPS, DPS family protein 21.1 1.3E+02 0.0043 18.1 3.7 21 20-40 105-125 (156)
43 2fkz_A Bacterioferritin; ferro 20.7 1.3E+02 0.0046 17.3 4.4 36 19-55 95-130 (155)
44 3iv1_A Tumor susceptibility ge 20.4 90 0.0031 17.5 2.6 38 43-80 11-49 (78)
No 1
>4b6x_A AVRRPS4, avirulence protein; toxin, type 3 secreted effector; 2.20A {Pseudomonas syringae PV}
Probab=87.59 E-value=2.3 Score=24.45 Aligned_cols=43 Identities=9% Similarity=0.261 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHhhCCCCCHHHH---HHHHHHHHHHHHHHHHhhh
Q psy4709 41 RKEMIDWIRSEFKHNKHLSDETSI---KMMIQYGQRSLKEVESSVS 83 (86)
Q Consensus 41 r~~~~~~iR~eF~~nk~~td~~~i---~~ll~~g~~~l~~l~~~~~ 83 (86)
++.+++-+++|.....+..+|.+| +.+|.+++..|..+.+++.
T Consensus 34 KQ~~i~~Lt~eLq~A~~eaNpaeIA~~~~~L~qAraDL~~l~r~~a 79 (90)
T 4b6x_A 34 KQLMVNNLTDELQDAIDEANPAEIANTSQQLRHARADLADLQRRFA 79 (90)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccCHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 467888999999999999999888 6899999999999988764
No 2
>2ld7_A Histone deacetylase complex subunit SAP30; transcription; NMR {Mus musculus}
Probab=76.63 E-value=3.7 Score=24.07 Aligned_cols=58 Identities=12% Similarity=0.284 Sum_probs=43.3
Q ss_pred hhhhhHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHH
Q psy4709 13 RQFLLRAEVLGLYKTFLRTAKEIPDESSRKEMIDWIRSEFKHNKHLSDETSIKMMIQYGQR 73 (86)
Q Consensus 13 ~~~~~r~~vl~LYR~~LR~~~~~~~~~~r~~~~~~iR~eF~~nk~~td~~~i~~ll~~g~~ 73 (86)
+...+...+|.=|+...+. ..|....+..+..-|+..|.. ..+...+.|..+|-..+.
T Consensus 23 df~kL~~~tLrrY~r~y~L--~~~~~~sK~qLa~aV~kHF~s-~~VdE~evI~~Fly~VK~ 80 (94)
T 2ld7_A 23 DLYQLQVNTLRRYKRHFKL--PTRPGLNKAQLVEIVGCHFKS-IPVNEKDTLTCFIYSVRN 80 (94)
T ss_dssp CCSSSCHHHHHHHHHHTTC--CCCSSCCHHHHHHHHHHHHTT-CCCCHHHHHHHHHHHHHH
T ss_pred CHHHCCHHHHHHHHHHhCC--CCCCCCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHh
Confidence 3344456889999999887 455555789999999999976 457666788887776654
No 3
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=59.58 E-value=15 Score=21.53 Aligned_cols=70 Identities=11% Similarity=0.255 Sum_probs=45.4
Q ss_pred hhhhhhHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHh
Q psy4709 12 FRQFLLRAEVLGLYKTFLRTAKEIPDESSRKEMIDWIRSEFKHNKHLSDETSIKMMIQYGQRSLKEVESS 81 (86)
Q Consensus 12 ~~~~~~r~~vl~LYR~~LR~~~~~~~~~~r~~~~~~iR~eF~~nk~~td~~~i~~ll~~g~~~l~~l~~~ 81 (86)
+++.+.-++.-.|=+.+-+.-..+.....-...+.....-|.+|....||..++..|.+....++.++.-
T Consensus 8 ~s~LPpeqRkkkL~~Ki~el~~ei~ke~~~regl~Km~~vY~~nP~~GD~~s~~~~L~e~~~kid~L~~e 77 (98)
T 2ke4_A 8 FSHLPPEQQRKRLQQQLEERSRELQKEVDQREALKKMKDVYEKTPQMGDPASLEPQIAETLSNIERLKLE 77 (98)
T ss_dssp SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCGGGCCGGGSHHHHHHHHHHHHHHHHH
T ss_pred hccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3344334444444444444444333222224577799999999999999999888888888887777653
No 4
>1nh2_B Transcription initiation factor IIA large chain; transcription/DNA; HET: 5IU; 1.90A {Saccharomyces cerevisiae} SCOP: a.32.1.1 PDB: 1ytf_B*
Probab=40.96 E-value=38 Score=17.50 Aligned_cols=45 Identities=20% Similarity=0.438 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHH
Q psy4709 20 EVLGLYKTFLRTAKEIPDESSRKEMIDWIRSEFKHNKHLSDETSIKMMIQYGQRSLKEV 78 (86)
Q Consensus 20 ~vl~LYR~~LR~~~~~~~~~~r~~~~~~iR~eF~~nk~~td~~~i~~ll~~g~~~l~~l 78 (86)
.|-.+|+.++. ....-+|.+|... ++ |+..+++|-.-++..|...
T Consensus 4 ~v~~vY~~VI~------------dVI~~vr~~F~~~-Gv-de~vL~eLk~~We~KL~~s 48 (53)
T 1nh2_B 4 EASRVYEIIVE------------SVVNEVREDFENA-GI-DEQTLQDLKNIWQKKLTET 48 (53)
T ss_dssp HHHHHHHHHHH------------HHHHHTHHHHHHT-TC-CHHHHHHHHHHHHHHHHC-
T ss_pred hHHHHHHHHHH------------HHHHHHHHHHHHc-CC-cHHHHHHHHHHHHHHHHHc
Confidence 46678888776 3678899999977 44 7889999888888877543
No 5
>1xl3_C Protein type A, secretion control protein; YOPN, TYEA, type III secretion, cell invasion; HET: MLY; 2.20A {Yersinia pestis} SCOP: a.243.1.1
Probab=39.65 E-value=55 Score=18.97 Aligned_cols=16 Identities=19% Similarity=0.418 Sum_probs=10.3
Q ss_pred HHHHHHHHHHhhCCCC
Q psy4709 22 LGLYKTFLRTAKEIPD 37 (86)
Q Consensus 22 l~LYR~~LR~~~~~~~ 37 (86)
+.+||.+++..|.+|.
T Consensus 42 I~Flqel~~l~R~iP~ 57 (92)
T 1xl3_C 42 VRFYQDLXRMFRLFPL 57 (92)
T ss_dssp HHHHHHHHHHHHTSCG
T ss_pred HHHHHHHHHHHHHCCH
Confidence 4566666666666664
No 6
>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A
Probab=39.40 E-value=41 Score=18.56 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=17.4
Q ss_pred HHHHHHhhCCCCCHHHHHHHHHHH
Q psy4709 48 IRSEFKHNKHLSDETSIKMMIQYG 71 (86)
Q Consensus 48 iR~eF~~nk~~td~~~i~~ll~~g 71 (86)
-+.+|=+.|++| .++|+.++.++
T Consensus 37 ~K~~FL~sKGLt-~eEI~~Al~ra 59 (70)
T 2w84_A 37 TRRAFLKKKGLT-DEEIDMAFQQS 59 (70)
T ss_dssp HHHHHHHHTTCC-HHHHHHHHHHH
T ss_pred HHHHHHHHcCCC-HHHHHHHHHHc
Confidence 366788888998 56788887765
No 7
>1nvp_B Transcription initiation factor IIA alpha chain; transcription regulation, DNA, complex, transcription/DNA complex; 2.10A {Homo sapiens} SCOP: a.32.1.1
Probab=38.66 E-value=44 Score=17.55 Aligned_cols=46 Identities=20% Similarity=0.318 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHH
Q psy4709 19 AEVLGLYKTFLRTAKEIPDESSRKEMIDWIRSEFKHNKHLSDETSIKMMIQYGQRSLKEV 78 (86)
Q Consensus 19 ~~vl~LYR~~LR~~~~~~~~~~r~~~~~~iR~eF~~nk~~td~~~i~~ll~~g~~~l~~l 78 (86)
..|-.+|+.++- ..+.-+|.+|..+ + -|+..+++|-.-++..|-..
T Consensus 7 ~~v~~vY~~VIe------------dVI~~vr~~F~~~-G-vde~vL~eLk~~We~KL~~s 52 (57)
T 1nvp_B 7 NTVPKLYRSVIE------------DVINDVRDIFLDD-G-VDEQVLMELKTLWENKLMQS 52 (57)
T ss_dssp -CHHHHHHHHHH------------HHHHHHHHHHHHH-T-CCHHHHHHHHHHHHHHHC--
T ss_pred chhHHHHHHHHH------------HHHHHHHHHHHHc-C-CCHHHHHHHHHHHHHHHHHc
Confidence 345668888775 3678999999987 3 45888888888888776543
No 8
>4am5_A Bacterioferritin; metal binding protein, ferroxidase centre, iron storage, DI centre, iron channel, heme binding; HET: HEM; 1.58A {Blastochloris viridis} PDB: 4am2_A* 4am4_A*
Probab=37.82 E-value=60 Score=19.59 Aligned_cols=35 Identities=17% Similarity=0.139 Sum_probs=26.5
Q ss_pred hhHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHH
Q psy4709 16 LLRAEVLGLYKTFLRTAKEIPDESSRKEMIDWIRS 50 (86)
Q Consensus 16 ~~r~~vl~LYR~~LR~~~~~~~~~~r~~~~~~iR~ 50 (86)
..-..|...|+.++..|....|+..+..+...+.+
T Consensus 92 ~~E~~~~~~~~~~~~~a~~~~D~~t~~~l~~il~e 126 (159)
T 4am5_A 92 AAEREARALYQEGAAYAASVGDFPSKNLFEELMGD 126 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34468899999999999998887777666654444
No 9
>3gvy_A Bacterioferritin; iron storage, DI-iron, ferroxida activity, heme, metal binding protein; HET: HEM; 2.80A {Rhodobacter sphaeroides} SCOP: a.25.1.1
Probab=36.72 E-value=55 Score=19.51 Aligned_cols=31 Identities=16% Similarity=0.185 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHhhCCCChhHHHHHHHHHHH
Q psy4709 20 EVLGLYKTFLRTAKEIPDESSRKEMIDWIRS 50 (86)
Q Consensus 20 ~vl~LYR~~LR~~~~~~~~~~r~~~~~~iR~ 50 (86)
.++..|+.++..|....|+..+..+...+.+
T Consensus 96 ~~~~~~~~~~~~A~~~~D~~t~~~l~~~~~e 126 (161)
T 3gvy_A 96 DARTLYIEARDHCEKVRDYPSKMLFEELIAD 126 (161)
T ss_dssp HHHHHHHHHHHHHTTTTCHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 6889999999999888887666555544443
No 10
>2qqy_A Sigma B operon; dodecameric alpha-helical, ferritin fold, structural genomic protein structure initiative; 2.00A {Bacillus anthracis str}
Probab=36.27 E-value=63 Score=18.68 Aligned_cols=26 Identities=12% Similarity=0.063 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHhhCCCChhHHHHHH
Q psy4709 20 EVLGLYKTFLRTAKEIPDESSRKEMI 45 (86)
Q Consensus 20 ~vl~LYR~~LR~~~~~~~~~~r~~~~ 45 (86)
.++..|+.++..+....|+..+..+.
T Consensus 99 ~~~~~~~~~~~~a~~~~D~~t~~~l~ 124 (149)
T 2qqy_A 99 ETIKRYEKRKEQAANLNMTELVVKLE 124 (149)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 66777888877777666655544443
No 11
>1u6h_B Talin; protein-protein complex, cell adhesion; 2.38A {Gallus gallus}
Probab=35.33 E-value=26 Score=16.23 Aligned_cols=26 Identities=8% Similarity=0.040 Sum_probs=16.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy4709 60 DETSIKMMIQYGQRSLKEVESSVSLI 85 (86)
Q Consensus 60 d~~~i~~ll~~g~~~l~~l~~~~~~~ 85 (86)
||+.-+.||.-++...+-..+++...
T Consensus 1 D~~~q~rLl~aak~vaeata~mVeaa 26 (31)
T 1u6h_B 1 DLENSRKLLSAAKILADATAKMVEAA 26 (31)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666778888888777777776543
No 12
>3uoi_A Bacterioferritin, BFR; structural genomics, TB structural genomics consortium, TBSG ferroxidation and iron storage, cytosol; HET: HEM; 1.90A {Mycobacterium tuberculosis} PDB: 3uof_A* 3qb9_A* 2wtl_A* 3bkn_A*
Probab=35.11 E-value=71 Score=18.95 Aligned_cols=32 Identities=19% Similarity=0.147 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHhhCCCChhHHHHHHHHHHH
Q psy4709 19 AEVLGLYKTFLRTAKEIPDESSRKEMIDWIRS 50 (86)
Q Consensus 19 ~~vl~LYR~~LR~~~~~~~~~~r~~~~~~iR~ 50 (86)
..+...|+.++..|..-.|+.....+...+.+
T Consensus 97 ~~~~~~~~~~~~~A~~~~D~~t~~~l~~~~~e 128 (161)
T 3uoi_A 97 YDVLNRLKPGIVMCREKQDTTSAVLLEKIVAD 128 (161)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 47889999999999888887665555544433
No 13
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=34.40 E-value=38 Score=17.70 Aligned_cols=22 Identities=27% Similarity=0.439 Sum_probs=15.4
Q ss_pred HHHHHHhhCCCCCHHHHHHHHHH
Q psy4709 48 IRSEFKHNKHLSDETSIKMMIQY 70 (86)
Q Consensus 48 iR~eF~~nk~~td~~~i~~ll~~ 70 (86)
-+-+|=+.|++| .++|+.++..
T Consensus 32 ~K~~FL~sKGLt-~~EI~~Al~r 53 (54)
T 3ff5_A 32 TRRAFLKKKGLT-DEEIDLAFQQ 53 (54)
T ss_dssp HHHHHHHHTTCC-HHHHHHHHHH
T ss_pred HHHHHHHHcCCC-HHHHHHHHHc
Confidence 356788888888 4567776654
No 14
>1a6f_A RNAse P protein, ribonuclease P protein; endonuclease, subunit; 2.60A {Bacillus subtilis} SCOP: d.14.1.2
Probab=34.18 E-value=48 Score=19.47 Aligned_cols=20 Identities=25% Similarity=0.361 Sum_probs=15.1
Q ss_pred hhHHHHHHHHHHHHHHhhCC
Q psy4709 38 ESSRKEMIDWIRSEFKHNKH 57 (86)
Q Consensus 38 ~~~r~~~~~~iR~eF~~nk~ 57 (86)
-..|+.+.+.+|+-|+.|.+
T Consensus 57 AV~RNRiKR~lRE~~R~~~~ 76 (119)
T 1a6f_A 57 AVMRNRIKRLIRQAFLEEKE 76 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHTT
T ss_pred chhHhHHHHHHHHHHHHhhc
Confidence 34677788888888887765
No 15
>1rm1_C Transcription initiation factor IIA large chain; yeast TFIIA, TBP protein, ATA-box DNA, transcription/DNA complex; 2.50A {Saccharomyces cerevisiae}
Probab=31.45 E-value=1.3e+02 Score=20.90 Aligned_cols=47 Identities=21% Similarity=0.413 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHH
Q psy4709 19 AEVLGLYKTFLRTAKEIPDESSRKEMIDWIRSEFKHNKHLSDETSIKMMIQYGQRSLKEVE 79 (86)
Q Consensus 19 ~~vl~LYR~~LR~~~~~~~~~~r~~~~~~iR~eF~~nk~~td~~~i~~ll~~g~~~l~~l~ 79 (86)
..|..+|+.++. .++..||.+|... + -|...+..|-..++..|....
T Consensus 4 ~~vskvY~~VIe------------dVI~~VR~dF~de-G-VDE~VL~ELk~~We~KL~qsg 50 (286)
T 1rm1_C 4 AEASRVYEIIVE------------SVVNEVREDFENA-G-IDEQTLQDLKNIWQKKLTETK 50 (286)
T ss_dssp HHHHHHHHHHHH------------HHHHHHHHHHHHH-T-CCHHHHHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHH------------HHHHHHHHHHHHh-C-ccHHHHHHHHHHHHHHHHhcC
Confidence 467888988876 3688999999966 4 458899999999998887643
No 16
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae}
Probab=30.94 E-value=92 Score=21.80 Aligned_cols=28 Identities=18% Similarity=0.179 Sum_probs=19.3
Q ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHH
Q psy4709 44 MIDWIRSEFKHNKHLSDETSIKMMIQYGQRSL 75 (86)
Q Consensus 44 ~~~~iR~eF~~nk~~td~~~i~~ll~~g~~~l 75 (86)
+..-+|+.|.+. +|+. ++..+.+|....
T Consensus 298 ~l~pire~~~~~---~d~~-~~~~l~~G~~~a 325 (348)
T 2yy5_A 298 LLVNIQRKREQI---SREQ-VFNCLQAGKNQA 325 (348)
T ss_dssp HHHHHHHHHHSS---CHHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh---cCch-HHHHHHHHHHHH
Confidence 345667777654 7888 999998884433
No 17
>1nz0_A Ribonuclease P protein component; endonuclease, RNAse, ALFA-beta sandwich, dimer, structural genomics, BSGC structure funded by NIH; HET: MSE; 1.20A {Thermotoga maritima} SCOP: d.14.1.2 PDB: 3ok7_A 3okb_A 3q1q_A 3q1r_A
Probab=30.06 E-value=48 Score=19.39 Aligned_cols=21 Identities=29% Similarity=0.724 Sum_probs=15.7
Q ss_pred hhHHHHHHHHHHHHHHhhCCC
Q psy4709 38 ESSRKEMIDWIRSEFKHNKHL 58 (86)
Q Consensus 38 ~~~r~~~~~~iR~eF~~nk~~ 58 (86)
-..|+.+.+.+|+-|+.|++.
T Consensus 58 AV~RNRiKR~lRE~~R~~~~~ 78 (118)
T 1nz0_A 58 ATRRNKLKRWVREIFRRNKGV 78 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHTTT
T ss_pred hhHHhHHHHHHHHHHHHHHhh
Confidence 346778888888888888763
No 18
>1nfv_A Bacterioferritin; 24 subunits in the active molecule, DIIRON HAEM Fe-coproporphyrin III cofactor, iron storage-electron complex; HET: FEC; 1.95A {Desulfovibrio desulfuricans} SCOP: a.25.1.1 PDB: 1nf6_A* 1nf4_A*
Probab=29.95 E-value=93 Score=18.88 Aligned_cols=31 Identities=23% Similarity=0.312 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHhhCCCChhHHHHHHHHHH
Q psy4709 19 AEVLGLYKTFLRTAKEIPDESSRKEMIDWIR 49 (86)
Q Consensus 19 ~~vl~LYR~~LR~~~~~~~~~~r~~~~~~iR 49 (86)
..++..|+.++..+....|+..+..+...+.
T Consensus 100 ~~~~~~y~~l~~~a~~~~D~~t~~~l~~~~~ 130 (179)
T 1nfv_A 100 DATIEAYSQFLKVCKEQGDIVTARLFERIIE 130 (179)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4788999999998888777666555554333
No 19
>3r2k_A Bacterioferritin, BFR; bacterial ferritin, iron binding, iron storage, iron homeost iron release, iron mobilization; 1.55A {Pseudomonas aeruginosa} SCOP: a.25.1.0 PDB: 3r2h_A 3r2l_A 3r2m_A 3r2o_A 3r2r_A 3r2s_A
Probab=29.65 E-value=89 Score=18.37 Aligned_cols=37 Identities=11% Similarity=0.003 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhh
Q psy4709 19 AEVLGLYKTFLRTAKEIPDESSRKEMIDWIRSEFKHN 55 (86)
Q Consensus 19 ~~vl~LYR~~LR~~~~~~~~~~r~~~~~~iR~eF~~n 55 (86)
..+...|+.++..|..-.|+.....+...+.++-++|
T Consensus 94 ~~~~~~~~~~~~~a~~~~D~~t~~~l~~~~~e~ee~h 130 (154)
T 3r2k_A 94 RHVRAALAKGIALCEQHKDFVSRDILKAQLADTEEDH 130 (154)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 4788899999999988887777666665555524444
No 20
>2ljp_A Ribonuclease P protein component; rnasep, ribozyme, hydrolase; NMR {Escherichia coli}
Probab=29.32 E-value=57 Score=19.10 Aligned_cols=22 Identities=18% Similarity=0.368 Sum_probs=15.8
Q ss_pred CChhHHHHHHHHHHHHHHhhCC
Q psy4709 36 PDESSRKEMIDWIRSEFKHNKH 57 (86)
Q Consensus 36 ~~~~~r~~~~~~iR~eF~~nk~ 57 (86)
..-..|+.+.+.+|+-|+.+.+
T Consensus 57 g~AV~RNRiKR~lRe~~R~~~~ 78 (119)
T 2ljp_A 57 RRAHERNRIKRLTRESFRLRQH 78 (119)
T ss_dssp CCHHHHHHHHHHHHHHHTTCTT
T ss_pred CchhHHhHHHHHHHHHHHHHHh
Confidence 3345677888888888887765
No 21
>3fvb_A Bacterioferritin; niaid, ssgcid, decode, structural genomics, seattle structural genomics center for infectious disease; HET: HEM; 1.81A {Brucella melitensis biovar ABORTUS2308}
Probab=29.28 E-value=68 Score=19.86 Aligned_cols=32 Identities=13% Similarity=0.138 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHhhCCCChhHHHHHHHHHHH
Q psy4709 19 AEVLGLYKTFLRTAKEIPDESSRKEMIDWIRS 50 (86)
Q Consensus 19 ~~vl~LYR~~LR~~~~~~~~~~r~~~~~~iR~ 50 (86)
..+...|+.++..|....|+..+..+...+.+
T Consensus 116 ~~~~~~y~~~i~~A~~~~D~~t~~~L~~il~e 147 (182)
T 3fvb_A 116 YDARASYKESREICDKLGDYVSKQLFDELLAD 147 (182)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 36888999999988877776665555544443
No 22
>1d6t_A Ribonuclease P, RNAse P protein; endonuclease, subunit, hydrolase; NMR {Staphylococcus aureus} SCOP: d.14.1.2
Probab=29.21 E-value=46 Score=19.48 Aligned_cols=20 Identities=30% Similarity=0.373 Sum_probs=15.0
Q ss_pred hhHHHHHHHHHHHHHHhhCC
Q psy4709 38 ESSRKEMIDWIRSEFKHNKH 57 (86)
Q Consensus 38 ~~~r~~~~~~iR~eF~~nk~ 57 (86)
-..|+.+.+.+|+-|+.|.+
T Consensus 56 AV~RNRiKR~lRE~~R~~~~ 75 (117)
T 1d6t_A 56 AVLRNKIKRAIRENFKVHKS 75 (117)
T ss_dssp TTHHHHHHHHHHHHHHHGGG
T ss_pred chHHhHHHHHHHHHHHHhhc
Confidence 34677888888888887765
No 23
>2jz1_A Protein doublesex; sex determination, development, gene regulation, ubiquitin, transcription; NMR {Drosophila melanogaster}
Probab=28.76 E-value=83 Score=17.72 Aligned_cols=26 Identities=19% Similarity=0.185 Sum_probs=22.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhhhh
Q psy4709 59 SDETSIKMMIQYGQRSLKEVESSVSL 84 (86)
Q Consensus 59 td~~~i~~ll~~g~~~l~~l~~~~~~ 84 (86)
.|.++..+.|.+|+...++..++..+
T Consensus 39 ~d~eeAsrrI~eg~~~vn~~~r~h~~ 64 (80)
T 2jz1_A 39 ANIEEASRRIEEGQYVVNEYSRQHNL 64 (80)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 57899999999999999999888654
No 24
>1z7l_A Ubiquitin-activating enzyme E1 1; SCCH, second catalytic cysteine half-domain, ligase; HET: TBR; 2.80A {Mus musculus}
Probab=28.25 E-value=65 Score=21.99 Aligned_cols=39 Identities=26% Similarity=0.534 Sum_probs=25.3
Q ss_pred HHhhCCCChhHHHHHHHHHHHHHHh---------hCCCCCHHHHHHHHHH
Q psy4709 30 RTAKEIPDESSRKEMIDWIRSEFKH---------NKHLSDETSIKMMIQY 70 (86)
Q Consensus 30 R~~~~~~~~~~r~~~~~~iR~eF~~---------nk~~td~~~i~~ll~~ 70 (86)
.+.+.||.- =..-+.|.|+.|.. |..++||+.++.+...
T Consensus 17 CTlrsfP~~--i~HcI~WAr~lFe~lF~~~~~~~n~~l~dp~~~~~~~~~ 64 (276)
T 1z7l_A 17 CTLKNFPNA--IEHTLQWARDEFEGLFKQPAENVNQYLTDSKFVERTLRL 64 (276)
T ss_dssp HHHHTCCCS--HHHHHHHHHHHHHHHHTHHHHHHHHHTTCSHHHHHHHTS
T ss_pred eccCCCCCC--hhHHHHHHHHHHHHHHcCCHHHHHHhhcChHHHHHHHhc
Confidence 455678862 26677888887754 4456777777666654
No 25
>1ji5_A DLP-1; dodecamer, four-helix bundle, metal transport; 2.50A {Bacillus anthracis} SCOP: a.25.1.1
Probab=27.36 E-value=96 Score=17.99 Aligned_cols=26 Identities=19% Similarity=0.156 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHhhCCCChhHHHHHH
Q psy4709 20 EVLGLYKTFLRTAKEIPDESSRKEMI 45 (86)
Q Consensus 20 ~vl~LYR~~LR~~~~~~~~~~r~~~~ 45 (86)
.++..|+.++..|..-.|+.++..+.
T Consensus 99 ~~~~~~~~~~~~a~~~~D~~t~~~l~ 124 (142)
T 1ji5_A 99 MMLVELKKGMEIAQNSDDEMTSDLLL 124 (142)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 56666777777666666655544443
No 26
>2y3q_A Bacterioferritin; metal binding protein, redox; HET: HEM; 1.55A {Escherichia coli} PDB: 1bfr_A* 1bcf_A* 2htn_A* 2vxi_A* 3e1j_A* 3e1l_A* 3e1m_A* 3e1n_A* 3e1o_A* 3e1p_A* 3ghq_A* 3e1q_A* 3e2c_A* 3isf_A* 3is8_A* 3ise_A* 3is7_A*
Probab=27.00 E-value=99 Score=18.06 Aligned_cols=36 Identities=19% Similarity=0.095 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhh
Q psy4709 19 AEVLGLYKTFLRTAKEIPDESSRKEMIDWIRSEFKHN 55 (86)
Q Consensus 19 ~~vl~LYR~~LR~~~~~~~~~~r~~~~~~iR~eF~~n 55 (86)
..+...|+.++..+..-.|+..+..+. ++-.+-.+|
T Consensus 95 ~~~~~~y~~~~~~a~~~~D~~t~~~l~-~~~~ee~~h 130 (158)
T 2y3q_A 95 LDGAKNLREAIGYADSVHDYVSRDMMI-EILRDEEGH 130 (158)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHH-HHHHHHHHH
Confidence 467888888888887767665554444 343333333
No 27
>3h3m_A Flagellar protein FLIT; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, flagellum; 2.50A {Bordetella bronchiseptica}
Probab=26.11 E-value=21 Score=21.71 Aligned_cols=30 Identities=20% Similarity=0.319 Sum_probs=8.7
Q ss_pred CCCCCCccChhhhhhHHHHHHHHHHHHHHh
Q psy4709 3 SKLPKSTLNFRQFLLRAEVLGLYKTFLRTA 32 (86)
Q Consensus 3 ~~l~~~~~s~~~~~~r~~vl~LYR~~LR~~ 32 (86)
|..|.|-.|++++.....++..|..++-.+
T Consensus 2 ~~~~~~~~~m~~m~~~~~ll~~Yq~Il~lS 31 (126)
T 3h3m_A 2 SSRPQREKSMTALTQHAPVLEIYQDIANLT 31 (126)
T ss_dssp ----------------CCHHHHHHHHHHHH
T ss_pred CCCCChhhHHhhhhhhHHHHHHHHHHHHHH
Confidence 556778788877555556677776655544
No 28
>1zv1_A Doublesex protein; UBA domain, dimerization, sex determination, transcription factor, protein binding; 1.60A {Drosophila melanogaster} PDB: 2jz0_A
Probab=25.66 E-value=87 Score=16.92 Aligned_cols=26 Identities=19% Similarity=0.185 Sum_probs=22.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhhhh
Q psy4709 59 SDETSIKMMIQYGQRSLKEVESSVSL 84 (86)
Q Consensus 59 td~~~i~~ll~~g~~~l~~l~~~~~~ 84 (86)
.|+++....|.+|+....+..++-++
T Consensus 39 ~d~eeAsrrI~Eg~~~v~~ysr~hnl 64 (65)
T 1zv1_A 39 ANIEEASRRIEEGQYVVNEYSRQHNL 64 (65)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 58999999999999999998877554
No 29
>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A
Probab=24.88 E-value=55 Score=24.06 Aligned_cols=22 Identities=23% Similarity=0.374 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHhhCCCCCH
Q psy4709 40 SRKEMIDWIRSEFKHNKHLSDE 61 (86)
Q Consensus 40 ~r~~~~~~iR~eF~~nk~~td~ 61 (86)
.|..+++.|.+.|++|.++++.
T Consensus 369 Irs~~l~~i~~a~~~~~~l~~l 390 (484)
T 4gwg_A 369 IRSVFLGKIKDAFDRNPELQNL 390 (484)
T ss_dssp TCBHHHHHHHHHHHHCTTCSCG
T ss_pred eHHHHHHHHHHHHHhCCCchhh
Confidence 4788999999999999998773
No 30
>1tjo_A Iron-rich DPSA-homolog protein; ferritin, low-iron, metal binding protein; 1.60A {Halobacterium salinarum} SCOP: a.25.1.1 PDB: 1moj_A 1tk6_A 1tko_A 1tkp_A
Probab=24.45 E-value=1.3e+02 Score=18.63 Aligned_cols=30 Identities=7% Similarity=0.179 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHhhCCCChhHHHHHHHHHH
Q psy4709 20 EVLGLYKTFLRTAKEIPDESSRKEMIDWIR 49 (86)
Q Consensus 20 ~vl~LYR~~LR~~~~~~~~~~r~~~~~~iR 49 (86)
.++..||.++..+....|+..+..+...+.
T Consensus 128 ~~i~~~r~~i~~a~e~~D~~T~dll~~~l~ 157 (182)
T 1tjo_A 128 DIIEATREHTELAENLGDHATAHMLREGLI 157 (182)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHCCCHHHHHHHHHHHH
Confidence 566777777777776666656555544433
No 31
>3qb9_A Bacterioferritin, BFR; cytosol, structural genomics, TB structural genomics consort TBSGC, metal binding protein; HET: HEM; 2.11A {Mycobacterium tuberculosis} PDB: 2wtl_A* 3bkn_A*
Probab=24.33 E-value=1.2e+02 Score=18.18 Aligned_cols=32 Identities=19% Similarity=0.147 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHhhCCCChhHHHHHHHHHHH
Q psy4709 19 AEVLGLYKTFLRTAKEIPDESSRKEMIDWIRS 50 (86)
Q Consensus 19 ~~vl~LYR~~LR~~~~~~~~~~r~~~~~~iR~ 50 (86)
..+...|+.++..+..-.|+..+..+...+.+
T Consensus 97 ~~~~~~y~~l~~~a~~~~D~~t~~~l~~~l~e 128 (174)
T 3qb9_A 97 YDVLNRLKPGIVMCREKQDTTSAVLLEKIVAD 128 (174)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 46888899999888877776665555544433
No 32
>2c41_A DPS family DNA-binding stress response protein; iron-binding/oxidation protein, DPS (DNA-binding proteins from starved cells); HET: PG4 PGE; 1.81A {Thermosynechococcus elongatus}
Probab=23.76 E-value=1.2e+02 Score=18.06 Aligned_cols=29 Identities=10% Similarity=-0.001 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHhhCCCChhHHHHHHHHH
Q psy4709 20 EVLGLYKTFLRTAKEIPDESSRKEMIDWI 48 (86)
Q Consensus 20 ~vl~LYR~~LR~~~~~~~~~~r~~~~~~i 48 (86)
.++..||.++..|..-.|+.++..+...+
T Consensus 108 ~~~~~~~~~i~~a~~~~D~~T~~ll~~~l 136 (158)
T 2c41_A 108 LIITEMHQDAEIATEAGDIGTADLYTRLV 136 (158)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 56666777777766666655544444333
No 33
>2vxx_A Starvation induced DNA binding protein; stress response protein, DPS, oxidation, iron binding, ferroxidase centre; HET: PG4; 2.40A {Synechococcus elongatus}
Probab=23.42 E-value=1e+02 Score=19.27 Aligned_cols=30 Identities=10% Similarity=0.201 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHhhCCCChhHHHHHHHHH
Q psy4709 19 AEVLGLYKTFLRTAKEIPDESSRKEMIDWI 48 (86)
Q Consensus 19 ~~vl~LYR~~LR~~~~~~~~~~r~~~~~~i 48 (86)
..++..|+.++..+....|+..+..+...+
T Consensus 126 ~~~i~~~~~~i~~a~~~~D~~T~~lL~~~l 155 (192)
T 2vxx_A 126 QAIIGVLRQQATQAESLGDRATAYLYDQIL 155 (192)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 466777788877777666655554444333
No 34
>3or1_C Sulfite reductase GAMA; dissimilatory sulfite reductase, sulfate reduction, oxidored sulfite reduction; HET: SRM; 1.76A {Desulfovibrio gigas} SCOP: d.203.1.1 PDB: 3or2_C* 2v4j_C* 2xsj_C*
Probab=22.56 E-value=1.1e+02 Score=17.96 Aligned_cols=29 Identities=14% Similarity=0.263 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHhhCCCCCHHHHHHHHHH
Q psy4709 42 KEMIDWIRSEFKHNKHLSDETSIKMMIQY 70 (86)
Q Consensus 42 ~~~~~~iR~eF~~nk~~td~~~i~~ll~~ 70 (86)
-.++.++|+-|.++......+.+...+..
T Consensus 47 W~vI~flR~yY~e~~~~P~iR~l~K~~~~ 75 (105)
T 3or1_C 47 QKIIDFLQDYYKANGIAPMVRILSKNTGF 75 (105)
T ss_dssp HHHHHHHHHHHHHHSSCCCHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHCCCCcHHHHHHHHCc
Confidence 34778999999988877665555444433
No 35
>1n1q_A DPS protein; four-helix bundle, unknown function; 2.20A {Brevibacillus brevis} SCOP: a.25.1.1
Probab=22.50 E-value=1.3e+02 Score=17.70 Aligned_cols=26 Identities=23% Similarity=0.275 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHhhCCCChhHHHHHH
Q psy4709 20 EVLGLYKTFLRTAKEIPDESSRKEMI 45 (86)
Q Consensus 20 ~vl~LYR~~LR~~~~~~~~~~r~~~~ 45 (86)
.++..||.++..+..-.|+.++..+.
T Consensus 106 ~~~~~~~~~i~~a~~~~D~~T~~ll~ 131 (149)
T 1n1q_A 106 DLVGELKVARDVADEADDEATADMLD 131 (149)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 45666666666666555555544333
No 36
>3sl9_C B-cell CLL/lymphoma 9 protein; armadillo repeat, components of the WNT signaling pathway, B catenin, signaling protein, protein binding; 2.20A {Homo sapiens} PDB: 2gl7_C
Probab=22.48 E-value=90 Score=15.97 Aligned_cols=30 Identities=23% Similarity=0.276 Sum_probs=23.0
Q ss_pred CCCccChhhhhhHHHHHHHHHHHHHHhhCCCC
Q psy4709 6 PKSTLNFRQFLLRAEVLGLYKTFLRTAKEIPD 37 (86)
Q Consensus 6 ~~~~~s~~~~~~r~~vl~LYR~~LR~~~~~~~ 37 (86)
-...+|-++..+|.+.+...|++-|.. ||+
T Consensus 6 n~~gls~eqlehrerslqtlrdi~r~~--~pD 35 (55)
T 3sl9_C 6 NPDGLSQEQLEHRERSLQTLRDIQRML--FPD 35 (55)
T ss_dssp -CCCCCHHHHHHHHHHHHHHHHHHHHH--C--
T ss_pred CCcccCHHHHHHHHHHHHHHHHHHHHh--CCc
Confidence 356789999999999999999998864 454
No 37
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} SCOP: c.26.1.1
Probab=22.34 E-value=2.1e+02 Score=20.11 Aligned_cols=34 Identities=12% Similarity=0.323 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHH
Q psy4709 43 EMIDWIRSEFKHNKHLSDETSIKMMIQYGQRSLKEV 78 (86)
Q Consensus 43 ~~~~~iR~eF~~nk~~td~~~i~~ll~~g~~~l~~l 78 (86)
.++.-+|+.|.+-. .||..++..+.+|.....++
T Consensus 295 ~~L~pirer~~~~~--~~~~~l~~il~~G~~kA~~~ 328 (346)
T 3n9i_A 295 GMLSELQERYRTYR--EDEALLQDVMREGAAKARAR 328 (346)
T ss_dssp HHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--cCHHHHHHHHHHHHHHHHHH
Confidence 34456777777654 48999999999887655443
No 38
>1jgc_A Bacterioferritin, BFR; iron storage protein, metal binding protein; HET: HEM; 2.60A {Rhodobacter capsulatus} SCOP: a.25.1.1
Probab=21.86 E-value=1.2e+02 Score=17.75 Aligned_cols=36 Identities=17% Similarity=0.214 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhh
Q psy4709 19 AEVLGLYKTFLRTAKEIPDESSRKEMIDWIRSEFKHN 55 (86)
Q Consensus 19 ~~vl~LYR~~LR~~~~~~~~~~r~~~~~~iR~eF~~n 55 (86)
..+...|+.++..+..-.|+..+..+.. +-.+-.+|
T Consensus 95 ~~~~~~~~~~~~~a~~~~D~~t~~~l~~-~~~ee~~h 130 (161)
T 1jgc_A 95 HDALKLYREARDYCAEVGDIVSKNIFES-LITDEEGH 130 (161)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHH-HHHHHHHH
Confidence 3578888888888876666656555543 33333333
No 39
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A
Probab=21.85 E-value=1.6e+02 Score=20.34 Aligned_cols=38 Identities=16% Similarity=0.371 Sum_probs=24.0
Q ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHHH--------HHHHHHHHHhhhh
Q psy4709 44 MIDWIRSEFKHNKHLSDETSIKMMIQYG--------QRSLKEVESSVSL 84 (86)
Q Consensus 44 ~~~~iR~eF~~nk~~td~~~i~~ll~~g--------~~~l~~l~~~~~~ 84 (86)
+..-||+.|.+.. .||. ++..+.+| ..-+++++..+++
T Consensus 279 ~l~pire~~~~~~--~~~~-~~~il~~g~~~a~~~a~~~~~~v~~~~g~ 324 (328)
T 1i6k_A 279 TLRPIQERYHHWM--ESEE-LDRVLDEGAEKANRVASEMVRKMEQAMGL 324 (328)
T ss_dssp HHHHHHHHHHHHH--TCTH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HhHHHHHHHHHHh--CChh-HHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4456677777653 4677 88888888 4445555555543
No 40
>1jig_A DLP-2; dodecamer, four-helix bundle, metal transport; 1.46A {Bacillus anthracis} SCOP: a.25.1.1
Probab=21.75 E-value=1.3e+02 Score=17.55 Aligned_cols=25 Identities=20% Similarity=0.182 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHhhCCCChhHHHHH
Q psy4709 20 EVLGLYKTFLRTAKEIPDESSRKEM 44 (86)
Q Consensus 20 ~vl~LYR~~LR~~~~~~~~~~r~~~ 44 (86)
.++..||.++..+..-.|+.++..+
T Consensus 103 ~~~~~~~~~i~~a~~~~D~~T~~ll 127 (146)
T 1jig_A 103 ALIQELKEGMEVAGEAGDATSADML 127 (146)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4556666666666655555554333
No 41
>1whu_A Polynucleotide phosphorylase; 3'-5' RNA exonuclease; pnpase, alpha-helical domain, structural genomics; NMR {Mus musculus} SCOP: a.4.9.1
Probab=21.32 E-value=1.2e+02 Score=17.13 Aligned_cols=58 Identities=16% Similarity=0.003 Sum_probs=39.3
Q ss_pred hhhHHHHHHHHHHHHHHhhC--CCChhHHHHHHHHHHHHHHhhC-CC---CCHHHHHHHHHHHH
Q psy4709 15 FLLRAEVLGLYKTFLRTAKE--IPDESSRKEMIDWIRSEFKHNK-HL---SDETSIKMMIQYGQ 72 (86)
Q Consensus 15 ~~~r~~vl~LYR~~LR~~~~--~~~~~~r~~~~~~iR~eF~~nk-~~---td~~~i~~ll~~g~ 72 (86)
..+...|-.++..-|+.+-. .++...|...+..|+++.-+.- .. .++..|...+..-+
T Consensus 16 ~el~~~V~~~~~~~l~~A~~~~~~~K~eR~~al~~ik~~v~~~l~~e~~~~~~~~i~~~~~~le 79 (104)
T 1whu_A 16 AEIVKYTKIIAMEKLYAVFTDYEHDKVSRDEAVNKIRLDTEEHLKEKFPEVDQFEIIESFNIVA 79 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCSCSHHHHHHHHHHHHHHHHHHTTTCSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHH
Confidence 34567899999999999998 8887788877777776654332 11 13455666655443
No 42
>2d5k_A DPS, DPS family protein; four helix bundle, metal binding protein; 1.85A {Staphylococcus aureus subsp}
Probab=21.10 E-value=1.3e+02 Score=18.08 Aligned_cols=21 Identities=14% Similarity=0.154 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHhhCCCChhH
Q psy4709 20 EVLGLYKTFLRTAKEIPDESS 40 (86)
Q Consensus 20 ~vl~LYR~~LR~~~~~~~~~~ 40 (86)
.++..||.++..|..-.|+.+
T Consensus 105 ~~~~~~~~~i~~a~~~~D~~T 125 (156)
T 2d5k_A 105 NISKQLENAIEIAGNAGDDVS 125 (156)
T ss_dssp HHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHH
Confidence 444555555555544444434
No 43
>2fkz_A Bacterioferritin; ferroxidase, DIIRON site, iron T metal binding protein; HET: HEM; 2.00A {Azotobacter vinelandii} SCOP: a.25.1.1 PDB: 2fl0_A* 1sof_A*
Probab=20.72 E-value=1.3e+02 Score=17.30 Aligned_cols=36 Identities=19% Similarity=0.135 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhh
Q psy4709 19 AEVLGLYKTFLRTAKEIPDESSRKEMIDWIRSEFKHN 55 (86)
Q Consensus 19 ~~vl~LYR~~LR~~~~~~~~~~r~~~~~~iR~eF~~n 55 (86)
..+...|+.++..+..-.|+..+..+.. +-.+-++|
T Consensus 95 ~~~~~~~~~~~~~a~~~~D~~t~~~l~~-~~~eee~h 130 (155)
T 2fkz_A 95 QAGLPDLKAAIAYCESVGDYASRELLED-ILESEEDH 130 (155)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHH-HHHHHHHH
Confidence 4678888888888877766656554443 33333333
No 44
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=20.42 E-value=90 Score=17.47 Aligned_cols=38 Identities=11% Similarity=0.143 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHhhCCCC-CHHHHHHHHHHHHHHHHHHHH
Q psy4709 43 EMIDWIRSEFKHNKHLS-DETSIKMMIQYGQRSLKEVES 80 (86)
Q Consensus 43 ~~~~~iR~eF~~nk~~t-d~~~i~~ll~~g~~~l~~l~~ 80 (86)
-+++++++.|..+..+- -....+.=|..|+..|+.|-.
T Consensus 11 KLRrrl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~ 49 (78)
T 3iv1_A 11 KLRWRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVT 49 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 35667777776665432 224555566666666665543
Done!