Query psy4709
Match_columns 86
No_of_seqs 108 out of 1004
Neff 7.4
Searched_HMMs 13730
Date Fri Aug 16 23:50:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4709.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/4709hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1nh2b_ a.32.1.1 (B:) Large ch 43.0 16 0.0011 17.4 6.6 42 20-75 3-44 (46)
2 d2csba1 a.60.2.4 (A:351-409) T 39.6 6.1 0.00044 19.3 1.2 39 44-82 16-56 (59)
3 d1xl3c1 a.243.1.1 (C:2-92) Tye 38.9 27 0.0019 18.9 5.0 16 22-37 41-56 (91)
4 d1e3ha1 a.4.9.1 (A:263-345) Po 37.1 25 0.0018 18.0 8.4 55 18-72 6-63 (83)
5 d1yuza1 a.25.1.1 (A:23-157) Ni 35.6 17 0.0012 20.0 3.0 33 19-51 95-127 (135)
6 d1nf4a_ a.25.1.1 (A:) Bacterio 32.4 38 0.0028 19.1 4.4 54 17-73 95-149 (169)
7 d2htna1 a.25.1.1 (A:1-158) Bac 32.0 39 0.0028 18.7 4.4 32 19-50 95-126 (158)
8 d1a6fa_ d.14.1.2 (A:) RNase P 30.2 28 0.002 18.7 3.3 23 35-57 53-75 (113)
9 d2fkza1 a.25.1.1 (A:1-154) Bac 29.2 44 0.0032 18.4 4.4 32 18-49 94-125 (154)
10 d1jgca_ a.25.1.1 (A:) Bacterio 29.0 34 0.0025 19.2 3.7 31 19-49 95-125 (160)
11 d1nz0a_ d.14.1.2 (A:) RNase P 27.6 23 0.0017 18.9 2.7 24 35-58 46-69 (109)
12 d1i6la_ c.26.1.1 (A:) Tryptoph 25.7 74 0.0054 20.0 5.3 40 44-86 279-326 (326)
13 d1ef1a1 a.11.2.1 (A:88-198) Mo 23.5 44 0.0032 17.6 3.4 30 42-71 79-108 (111)
14 d1lkoa1 a.25.1.1 (A:2-147) Rub 23.5 39 0.0028 18.5 3.2 33 19-51 95-127 (146)
15 d1d6ta_ d.14.1.2 (A:) RNase P 21.7 34 0.0025 18.4 2.6 19 39-57 57-75 (117)
16 d1nvpb_ a.32.1.1 (B:) Large ch 21.6 41 0.003 15.5 5.2 31 43-75 12-42 (43)
17 d1gg3a1 a.11.2.1 (A:82-187) Er 21.3 57 0.0042 17.0 4.3 31 42-72 71-101 (106)
18 d2v4jc1 d.203.1.1 (C:3-105) Ds 20.4 60 0.0044 17.6 3.5 27 43-69 46-72 (103)
No 1
>d1nh2b_ a.32.1.1 (B:) Large chain TOA1, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=43.02 E-value=16 Score=17.37 Aligned_cols=42 Identities=19% Similarity=0.404 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHH
Q psy4709 20 EVLGLYKTFLRTAKEIPDESSRKEMIDWIRSEFKHNKHLSDETSIKMMIQYGQRSL 75 (86)
Q Consensus 20 ~vl~LYR~~LR~~~~~~~~~~r~~~~~~iR~eF~~nk~~td~~~i~~ll~~g~~~l 75 (86)
.|-.+|..++. ..+..+|.+|..+ + -|...++.|-.-++..|
T Consensus 3 ~v~~vY~~VI~------------dVI~~vR~dF~~~-G-vde~vL~eLk~~We~Kl 44 (46)
T d1nh2b_ 3 EASRVYEIIVE------------SVVNEVREDFENA-G-IDEQTLQDLKNIWQKKL 44 (46)
T ss_dssp HHHHHHHHHHH------------HHHHHTHHHHHHT-T-CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH------------HHHHHHHHHHHHc-C-CcHHHHHHHHHHHHHHh
Confidence 45567777665 4778999999988 4 56788888877777665
No 2
>d2csba1 a.60.2.4 (A:351-409) Topoisomerase V {Methanopyrus kandleri [TaxId: 2320]}
Probab=39.58 E-value=6.1 Score=19.26 Aligned_cols=39 Identities=21% Similarity=0.233 Sum_probs=27.8
Q ss_pred HHHHHHHHHHhhCCC--CCHHHHHHHHHHHHHHHHHHHHhh
Q psy4709 44 MIDWIRSEFKHNKHL--SDETSIKMMIQYGQRSLKEVESSV 82 (86)
Q Consensus 44 ~~~~iR~eF~~nk~~--td~~~i~~ll~~g~~~l~~l~~~~ 82 (86)
..+.+-+.|+.-.++ ||.++|+.++++|+-.-+..+..+
T Consensus 16 aadeliehfesiagilatdleeiermyeegrlseeayraav 56 (59)
T d2csba1 16 AADELIEHFESIAGILATDLEEIERMYEEGRLSEEAYRAAV 56 (59)
T ss_dssp HHHHHHHHHSSHHHHHTSCHHHHHHHHHHTSSCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhhHHHHHHHHHcccccHHHHHHHh
Confidence 456677888876654 899999999999875444444433
No 3
>d1xl3c1 a.243.1.1 (C:2-92) TyeA {Yersinia pestis [TaxId: 632]}
Probab=38.87 E-value=27 Score=18.89 Aligned_cols=16 Identities=19% Similarity=0.382 Sum_probs=10.2
Q ss_pred HHHHHHHHHHhhCCCC
Q psy4709 22 LGLYKTFLRTAKEIPD 37 (86)
Q Consensus 22 l~LYR~~LR~~~~~~~ 37 (86)
+.+|+.+.+..|.+|.
T Consensus 41 I~F~~El~~l~R~iP~ 56 (91)
T d1xl3c1 41 VRFYQDLKRMFRLFPL 56 (91)
T ss_dssp HHHHHHHHHHHHTSCG
T ss_pred HHHHHHHHHHHHHCCH
Confidence 4566666666666663
No 4
>d1e3ha1 a.4.9.1 (A:263-345) Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 {Streptomyces antibioticus [TaxId: 1890]}
Probab=37.15 E-value=25 Score=18.02 Aligned_cols=55 Identities=13% Similarity=0.052 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhCCCCCH---HHHHHHHHHHH
Q psy4709 18 RAEVLGLYKTFLRTAKEIPDESSRKEMIDWIRSEFKHNKHLSDE---TSIKMMIQYGQ 72 (86)
Q Consensus 18 r~~vl~LYR~~LR~~~~~~~~~~r~~~~~~iR~eF~~nk~~td~---~~i~~ll~~g~ 72 (86)
...|-.++..=|..|-..++...|...+..|+++-.++-...+| ..|...+..-+
T Consensus 6 ~~~v~~~~~~~l~~A~~~~~K~eR~~al~~lk~~~~e~~~~~~~~~~~~i~~~~~~l~ 63 (83)
T d1e3ha1 6 LEALSAAVRPELSAALTIAGKQDREAELDRVKALAAEKLLPEFEGREKEISAAYRALT 63 (83)
T ss_dssp HHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHHTTTTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHH
Confidence 45788999999999999999888988888888777655444333 45555555433
No 5
>d1yuza1 a.25.1.1 (A:23-157) Nigerythrin, N-terminal domain {Desulfovibrio vulgaris [TaxId: 881]}
Probab=35.57 E-value=17 Score=19.95 Aligned_cols=33 Identities=21% Similarity=0.260 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHH
Q psy4709 19 AEVLGLYKTFLRTAKEIPDESSRKEMIDWIRSE 51 (86)
Q Consensus 19 ~~vl~LYR~~LR~~~~~~~~~~r~~~~~~iR~e 51 (86)
..+...|+.++..++.-.++..+..+...+.+|
T Consensus 95 ~e~~~~Y~~~~~~A~~~~d~~~~~~f~~i~~~E 127 (135)
T d1yuza1 95 YETSDMYPAFIRKAQEEGNSKAVHVFTRAKLAE 127 (135)
T ss_dssp HHHHTHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 368889999999999888776666666555543
No 6
>d1nf4a_ a.25.1.1 (A:) Bacterioferritin (cytochrome b1) {Desulfovibrio desulfuricans [TaxId: 876]}
Probab=32.40 E-value=38 Score=19.13 Aligned_cols=54 Identities=22% Similarity=0.259 Sum_probs=33.5
Q ss_pred hHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHH-HHH
Q psy4709 17 LRAEVLGLYKTFLRTAKEIPDESSRKEMIDWIRSEFKHNKHLSDETSIKMMIQY-GQR 73 (86)
Q Consensus 17 ~r~~vl~LYR~~LR~~~~~~~~~~r~~~~~~iR~eF~~nk~~td~~~i~~ll~~-g~~ 73 (86)
.-..+...|+.++..|....|+..+..+...+. +-+.| +.-.+.+-.+++. |++
T Consensus 95 ~E~~~~~~y~~~~~~A~~~~D~~t~~~l~~il~-eE~~H--~~~~e~~l~~i~~~G~~ 149 (169)
T d1nf4a_ 95 QEDATIEAYSQFLKVCKEQGDIVTARLFERIIE-EEQAH--LTYYENIGSHIKNLGDT 149 (169)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHH--HHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHHH--HHHHHHHHHHHHHHhHH
Confidence 445889999999999998888777666655444 43444 3223334444444 543
No 7
>d2htna1 a.25.1.1 (A:1-158) Bacterioferritin (cytochrome b1) {Escherichia coli [TaxId: 562]}
Probab=31.99 E-value=39 Score=18.73 Aligned_cols=32 Identities=22% Similarity=0.229 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHhhCCCChhHHHHHHHHHHH
Q psy4709 19 AEVLGLYKTFLRTAKEIPDESSRKEMIDWIRS 50 (86)
Q Consensus 19 ~~vl~LYR~~LR~~~~~~~~~~r~~~~~~iR~ 50 (86)
..++..|+.+++.+....|+..+..+...+.+
T Consensus 95 ~~~~~~~~~~~~~a~~~~D~~t~~~l~~il~e 126 (158)
T d2htna1 95 LDGAKNLREAIGYADSVHDYVSRDMMIEILRD 126 (158)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 46778888888888877776666555554443
No 8
>d1a6fa_ d.14.1.2 (A:) RNase P protein {Bacillus subtilis [TaxId: 1423]}
Probab=30.23 E-value=28 Score=18.73 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=15.8
Q ss_pred CCChhHHHHHHHHHHHHHHhhCC
Q psy4709 35 IPDESSRKEMIDWIRSEFKHNKH 57 (86)
Q Consensus 35 ~~~~~~r~~~~~~iR~eF~~nk~ 57 (86)
+..-..|+.+.+.+|+.|+.+.+
T Consensus 53 vg~AV~RNriKR~lRe~~r~~~~ 75 (113)
T d1a6fa_ 53 IGNAVMRNRIKRLIRQAFLEEKE 75 (113)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHTT
T ss_pred ccchHHHHHHHHHHHHHHHHhhc
Confidence 33344677788888888877765
No 9
>d2fkza1 a.25.1.1 (A:1-154) Bacterioferritin (cytochrome b1) {Azotobacter vinelandii [TaxId: 354]}
Probab=29.17 E-value=44 Score=18.42 Aligned_cols=32 Identities=19% Similarity=0.159 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHhhCCCChhHHHHHHHHHH
Q psy4709 18 RAEVLGLYKTFLRTAKEIPDESSRKEMIDWIR 49 (86)
Q Consensus 18 r~~vl~LYR~~LR~~~~~~~~~~r~~~~~~iR 49 (86)
-..++..|+.+...|....|+.....+...+.
T Consensus 94 E~~~~~~y~~~~~~a~~~~D~~t~~~l~~il~ 125 (154)
T d2fkza1 94 EQAGLPDLKAAIAYCESVGDYASRELLEDILE 125 (154)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34788888888888888777656555553333
No 10
>d1jgca_ a.25.1.1 (A:) Bacterioferritin (cytochrome b1) {Rhodobacter capsulatus [TaxId: 1061]}
Probab=29.05 E-value=34 Score=19.23 Aligned_cols=31 Identities=23% Similarity=0.263 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHhhCCCChhHHHHHHHHHH
Q psy4709 19 AEVLGLYKTFLRTAKEIPDESSRKEMIDWIR 49 (86)
Q Consensus 19 ~~vl~LYR~~LR~~~~~~~~~~r~~~~~~iR 49 (86)
..++..|+.++..+....|+.++..+...+.
T Consensus 95 ~~~~~~~~~~~~~a~~~~D~~t~~~l~~~l~ 125 (160)
T d1jgca_ 95 HDALKLYREARDYCAEVGDIVSKNIFESLIT 125 (160)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 4677788888887776666555444443333
No 11
>d1nz0a_ d.14.1.2 (A:) RNase P protein {Thermotoga maritima [TaxId: 2336]}
Probab=27.58 E-value=23 Score=18.93 Aligned_cols=24 Identities=25% Similarity=0.632 Sum_probs=16.9
Q ss_pred CCChhHHHHHHHHHHHHHHhhCCC
Q psy4709 35 IPDESSRKEMIDWIRSEFKHNKHL 58 (86)
Q Consensus 35 ~~~~~~r~~~~~~iR~eF~~nk~~ 58 (86)
+..-..|+.+.+.+|+-|+.+.+.
T Consensus 46 vg~AV~RNriKR~lRe~~r~~~~~ 69 (109)
T d1nz0a_ 46 FGKATRRNKLKRWVREIFRRNKGV 69 (109)
T ss_dssp GCSHHHHHHHHHHHHHHHHHHTTT
T ss_pred chhHHHHHHHHHHHHHHHHHHHhh
Confidence 333456788888888888887653
No 12
>d1i6la_ c.26.1.1 (A:) Tryptophanyl-tRNA synthetase (TrpRS) {Bacillus stearothermophilus [TaxId: 1422]}
Probab=25.67 E-value=74 Score=20.03 Aligned_cols=40 Identities=15% Similarity=0.340 Sum_probs=25.3
Q ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHHH--------HHHHHHHHHhhhhcC
Q psy4709 44 MIDWIRSEFKHNKHLSDETSIKMMIQYG--------QRSLKEVESSVSLIK 86 (86)
Q Consensus 44 ~~~~iR~eF~~nk~~td~~~i~~ll~~g--------~~~l~~l~~~~~~~~ 86 (86)
++.-+|+.|.+.. .|+ .+...|.+| ++-+++++..++|+|
T Consensus 279 ~L~PiRer~~~l~--~~~-~l~~iL~~Ga~kAr~~A~~tl~~Vr~~~Gl~r 326 (326)
T d1i6la_ 279 TLRPIQERYHHWM--ESE-ELDRVLDEGAEKANRVASEMVRKMEQAMGLGR 326 (326)
T ss_dssp HHHHHHHHHHHHH--TCT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred HhHHHHHHHHHHh--CCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 4456677777653 445 366666655 556777777777764
No 13
>d1ef1a1 a.11.2.1 (A:88-198) Moesin {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.53 E-value=44 Score=17.64 Aligned_cols=30 Identities=7% Similarity=0.133 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHhhCCCCCHHHHHHHHHHH
Q psy4709 42 KEMIDWIRSEFKHNKHLSDETSIKMMIQYG 71 (86)
Q Consensus 42 ~~~~~~iR~eF~~nk~~td~~~i~~ll~~g 71 (86)
..+...|...+..+++.|..+.....|..+
T Consensus 79 ~~~~~~I~~~h~~l~g~s~~~A~~~fL~~~ 108 (111)
T d1ef1a1 79 DQWEERIQVWHEEHRGMLREDAVLEYLKIA 108 (111)
T ss_dssp HHHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcCHHHHHHHHHHHH
Confidence 578889999999999998766666655544
No 14
>d1lkoa1 a.25.1.1 (A:2-147) Rubrerythrin, N-terminal domain {Desulfovibrio vulgaris [TaxId: 881]}
Probab=23.49 E-value=39 Score=18.54 Aligned_cols=33 Identities=24% Similarity=0.266 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHH
Q psy4709 19 AEVLGLYKTFLRTAKEIPDESSRKEMIDWIRSE 51 (86)
Q Consensus 19 ~~vl~LYR~~LR~~~~~~~~~~r~~~~~~iR~e 51 (86)
..+...|..+.+.++.-.++..+..+...+.+|
T Consensus 95 ~e~~~~y~~~~~~a~~~~D~~~~~~f~~i~~~E 127 (146)
T d1lkoa1 95 HEYTEMYPSFARIAREEGYEEIARVFASIAVAE 127 (146)
T ss_dssp HHHHTHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 368889999999999988877766666555544
No 15
>d1d6ta_ d.14.1.2 (A:) RNase P protein {Staphylococcus aureus [TaxId: 1280]}
Probab=21.66 E-value=34 Score=18.44 Aligned_cols=19 Identities=32% Similarity=0.392 Sum_probs=12.8
Q ss_pred hHHHHHHHHHHHHHHhhCC
Q psy4709 39 SSRKEMIDWIRSEFKHNKH 57 (86)
Q Consensus 39 ~~r~~~~~~iR~eF~~nk~ 57 (86)
..|+.+.+.+|+.|+.+.+
T Consensus 57 V~RNriKR~lRe~~R~~~~ 75 (117)
T d1d6ta_ 57 VLRNKIKRAIRENFKVHKS 75 (117)
T ss_dssp THHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHhhhc
Confidence 4567777777777776654
No 16
>d1nvpb_ a.32.1.1 (B:) Large chain TOA1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.62 E-value=41 Score=15.53 Aligned_cols=31 Identities=19% Similarity=0.276 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHH
Q psy4709 43 EMIDWIRSEFKHNKHLSDETSIKMMIQYGQRSL 75 (86)
Q Consensus 43 ~~~~~iR~eF~~nk~~td~~~i~~ll~~g~~~l 75 (86)
..+..+|+.|..+ + -|...++.|-.-++..|
T Consensus 12 dVI~~vR~~F~~~-G-vDe~vL~eLk~~We~KL 42 (43)
T d1nvpb_ 12 DVINDVRDIFLDD-G-VDEQVLMELKTLWENKL 42 (43)
T ss_dssp HHHHHHHHHHHHH-T-CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc-C-CcHHHHHHHHHHHHHhc
Confidence 4788999999988 4 45777887777666554
No 17
>d1gg3a1 a.11.2.1 (A:82-187) Erythroid membrane protein 4.1R {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.25 E-value=57 Score=17.02 Aligned_cols=31 Identities=10% Similarity=0.136 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHhhCCCCCHHHHHHHHHHHH
Q psy4709 42 KEMIDWIRSEFKHNKHLSDETSIKMMIQYGQ 72 (86)
Q Consensus 42 ~~~~~~iR~eF~~nk~~td~~~i~~ll~~g~ 72 (86)
.++...|-..+.+.++.+..+.....|..++
T Consensus 71 ~~~~~~I~~~h~~l~G~s~~~A~~~fL~~~~ 101 (106)
T d1gg3a1 71 KELEEKVMELHKSYRSMTPAQADLEFLENAK 101 (106)
T ss_dssp HHHHHHHHHHHHHCCSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCcCHHHHHHHHHHHHh
Confidence 5678899999999999987666666666554
No 18
>d2v4jc1 d.203.1.1 (C:3-105) DsrC, the gamma subunit of dissimilatory sulfite reductase {Desulfovibrio vulgaris [TaxId: 881]}
Probab=20.40 E-value=60 Score=17.57 Aligned_cols=27 Identities=15% Similarity=0.218 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHhhCCCCCHHHHHHHHH
Q psy4709 43 EMIDWIRSEFKHNKHLSDETSIKMMIQ 69 (86)
Q Consensus 43 ~~~~~iR~eF~~nk~~td~~~i~~ll~ 69 (86)
.++..+|+-|.+|......+.+...+.
T Consensus 46 ~vI~~lR~~y~~~~~~P~~R~l~K~~~ 72 (103)
T d2v4jc1 46 KIIDFLQDYYKKNGIAPMVRILSKNTG 72 (103)
T ss_dssp HHHHHHHHHHHHHSSCCCHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCCCCcHHHHHHHhc
Confidence 467899999999977776665554443
Done!