RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4709
(86 letters)
>d1fuia2 c.85.1.1 (A:1-355) L-fucose isomerase, N-terminal and
second domains {Escherichia coli [TaxId: 562]}
Length = 355
Score = 27.9 bits (62), Expect = 0.12
Identities = 9/70 (12%), Positives = 25/70 (35%), Gaps = 14/70 (20%)
Query: 13 RQFLLRAEVLGLYKTFLRTAKEIPDESSRKEMIDWIRS-----------EFKHNKHLSD- 60
++ + + + + R ++I DE+ + + W +++ N S
Sbjct: 199 SWLGMKVQAVDMTELRRRIDQKIYDEAELEMALAWADKNFRYGEDENNKQYQRNAEQSRA 258
Query: 61 --ETSIKMMI 68
S+ M +
Sbjct: 259 VLRESLLMAM 268
>d1yuza1 a.25.1.1 (A:23-157) Nigerythrin, N-terminal domain
{Desulfovibrio vulgaris [TaxId: 881]}
Length = 135
Score = 25.5 bits (55), Expect = 0.73
Identities = 8/35 (22%), Positives = 14/35 (40%)
Query: 20 EVLGLYKTFLRTAKEIPDESSRKEMIDWIRSEFKH 54
E +Y F+R A+E + + +E H
Sbjct: 96 ETSDMYPAFIRKAQEEGNSKAVHVFTRAKLAESVH 130
>d1l8na1 c.1.8.10 (A:143-678) alpha-D-glucuronidase catalytic domain
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 536
Score = 25.8 bits (57), Expect = 0.76
Identities = 6/32 (18%), Positives = 15/32 (46%)
Query: 36 PDESSRKEMIDWIRSEFKHNKHLSDETSIKMM 67
PD S+ + +W+ F + + + S ++
Sbjct: 330 PDLSAEEIANEWVVQTFGDDSQVVETISWMLL 361
>d1h41a1 c.1.8.10 (A:152-712) alpha-D-glucuronidase catalytic domain
{Pseudomonas cellulosa [TaxId: 155077]}
Length = 561
Score = 25.1 bits (55), Expect = 1.1
Identities = 6/34 (17%), Positives = 13/34 (38%), Gaps = 1/34 (2%)
Query: 36 PDESSRKEMIDWIRSEFKHNKHLSDETSIKMMIQ 69
S+ +W+R F + + +MM+
Sbjct: 322 HQISAATAADEWLRMTFSNQPAFIE-PVKQMMLV 354
>d1w6ka2 a.102.4.2 (A:100-378) Lanosterol synthase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 279
Score = 25.2 bits (55), Expect = 1.1
Identities = 7/37 (18%), Positives = 16/37 (43%), Gaps = 5/37 (13%)
Query: 15 FLLRAEVLGLYKTFLRTAKEIPDESSRKEMIDWIRSE 51
FLL ++ + + R+E++ ++RS
Sbjct: 4 FLLPGLLITCHVA-----RIPLPAGYREEIVRYLRSV 35
>d1e3ha1 a.4.9.1 (A:263-345) Polynucleotide
phosphorylase/guanosine pentaphosphate synthase
(PNPase/GPSI), domain 3 {Streptomyces antibioticus
[TaxId: 1890]}
Length = 83
Score = 24.0 bits (52), Expect = 1.4
Identities = 8/62 (12%), Positives = 20/62 (32%)
Query: 17 LRAEVLGLYKTFLRTAKEIPDESSRKEMIDWIRSEFKHNKHLSDETSIKMMIQYGQRSLK 76
+ + + L A I + R+ +D +++ E K + + K
Sbjct: 5 VLEALSAAVRPELSAALTIAGKQDREAELDRVKALAAEKLLPEFEGREKEISAAYRALTK 64
Query: 77 EV 78
+
Sbjct: 65 SL 66
>d1p80a1 c.23.16.3 (A:598-753) Catalase, C-terminal domain
{Escherichia coli, HPII [TaxId: 562]}
Length = 156
Score = 23.9 bits (51), Expect = 2.7
Identities = 5/32 (15%), Positives = 11/32 (34%)
Query: 25 YKTFLRTAKEIPDESSRKEMIDWIRSEFKHNK 56
+ I D + + ++ +KH K
Sbjct: 65 VDAVIVPCGNIADIADNGDANYYLMEAYKHLK 96
>d2qjza1 a.40.1.1 (A:13-132) Microtubule-associated protein eb1,
N-terminal microtubule binding domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 120
Score = 23.6 bits (51), Expect = 3.4
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 37 DESSRKEMIDWIRSEFKHN 55
D SR +M+ WI + N
Sbjct: 1 DNLSRHDMLAWINESLQLN 19
>d2vgla_ a.118.1.10 (A:) Adaptin alpha C subunit N-terminal
fragment {Mouse (Mus musculus) [TaxId: 10090]}
Length = 584
Score = 24.0 bits (51), Expect = 3.8
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
Query: 29 LRTAKEIPDESSR--KEMIDWIRSEFKHNKHLS 59
+R K E R KE+ + IRS+FK +K L
Sbjct: 12 IRNCKSKEAEIKRINKELAN-IRSKFKGDKALD 43
>d1bu2a1 a.74.1.1 (A:22-148) Viral cyclin {Herpesvirus saimiri
[TaxId: 10381]}
Length = 127
Score = 23.3 bits (50), Expect = 4.1
Identities = 7/51 (13%), Positives = 16/51 (31%), Gaps = 2/51 (3%)
Query: 12 FRQFLLRAEVLGLYKTFLRTAKEIPDESSRKEMIDWIRSEFKHNKHLSDET 62
LR +L + + E+ +R ++ W+ + L
Sbjct: 3 LNNLKLRELLLPKFTSLWEIQTEV-TVDNRTILLTWM-HLLCESFELDKSV 51
>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 339
Score = 23.1 bits (48), Expect = 5.6
Identities = 7/19 (36%), Positives = 8/19 (42%)
Query: 42 KEMIDWIRSEFKHNKHLSD 60
K M+D K K L D
Sbjct: 318 KMMVDEDLELAKREKVLVD 336
>d1x6va2 c.26.1.5 (A:390-624) ATP sulfurylase catalytic domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 235
Score = 23.0 bits (49), Expect = 6.4
Identities = 3/25 (12%), Positives = 9/25 (36%)
Query: 29 LRTAKEIPDESSRKEMIDWIRSEFK 53
R ++ P+ + + +K
Sbjct: 206 AREGQKPPEGFMAPKAWTVLTEYYK 230
>d3dssb1 a.102.4.3 (B:7-331) Rab geranylgeranyltransferase, beta
subunit {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 325
Score = 22.6 bits (48), Expect = 8.1
Identities = 3/15 (20%), Positives = 10/15 (66%)
Query: 36 PDESSRKEMIDWIRS 50
+++E++ +I+S
Sbjct: 57 LHRMNKEEILVFIKS 71
>d2cchb1 a.74.1.1 (B:181-308) Cyclin A {Cow (Bos taurus) [TaxId:
9913]}
Length = 128
Score = 22.2 bits (47), Expect = 9.2
Identities = 9/37 (24%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 26 KTFLRTAKEIPDESSRKEMIDWIRSEFKHNKHLSDET 62
+++ +I S R ++DW+ E L +ET
Sbjct: 17 VGYMKKQPDI-TNSMRAILVDWL-VEVGEEYKLQNET 51
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.129 0.349
Gapped
Lambda K H
0.267 0.0563 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 282,243
Number of extensions: 10668
Number of successful extensions: 52
Number of sequences better than 10.0: 1
Number of HSP's gapped: 52
Number of HSP's successfully gapped: 28
Length of query: 86
Length of database: 2,407,596
Length adjustment: 51
Effective length of query: 35
Effective length of database: 1,707,366
Effective search space: 59757810
Effective search space used: 59757810
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.3 bits)