Query psy471
Match_columns 211
No_of_seqs 141 out of 1486
Neff 6.6
Searched_HMMs 46136
Date Fri Aug 16 23:51:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy471.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/471hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0100|consensus 100.0 6.9E-30 1.5E-34 230.4 8.8 136 14-156 85-246 (663)
2 COG0443 DnaK Molecular chapero 99.9 7.4E-28 1.6E-32 229.4 10.8 135 14-155 56-192 (579)
3 PRK13411 molecular chaperone D 99.9 1.3E-26 2.7E-31 223.7 12.8 146 5-156 37-207 (653)
4 PRK13410 molecular chaperone D 99.9 1.2E-26 2.6E-31 224.3 12.0 146 4-156 36-208 (668)
5 PTZ00186 heat shock 70 kDa pre 99.9 2E-26 4.3E-31 222.4 13.2 145 5-156 62-233 (657)
6 PTZ00400 DnaK-type molecular c 99.9 2.8E-26 6E-31 221.7 12.4 146 4-156 75-247 (663)
7 PRK00290 dnaK molecular chaper 99.9 7E-26 1.5E-30 217.5 13.2 145 5-156 37-206 (627)
8 PTZ00009 heat shock 70 kDa pro 99.9 3.8E-26 8.3E-31 220.4 11.4 147 5-156 39-215 (653)
9 TIGR02350 prok_dnaK chaperone 99.9 6.7E-26 1.4E-30 216.3 12.9 146 5-156 35-204 (595)
10 TIGR01991 HscA Fe-S protein as 99.9 7.9E-26 1.7E-30 216.3 12.7 145 5-156 34-202 (599)
11 PLN03184 chloroplast Hsp70; Pr 99.9 8.7E-26 1.9E-30 218.5 12.8 146 4-156 73-245 (673)
12 PRK01433 hscA chaperone protei 99.9 8.1E-26 1.8E-30 216.1 11.8 104 46-156 111-214 (595)
13 PRK05183 hscA chaperone protei 99.9 2.3E-25 5E-30 213.7 12.7 135 15-156 69-222 (616)
14 CHL00094 dnaK heat shock prote 99.9 3.8E-25 8.3E-30 212.3 12.0 144 5-155 37-207 (621)
15 PF00012 HSP70: Hsp70 protein; 99.9 3.5E-24 7.5E-29 203.1 10.9 102 49-156 108-209 (602)
16 KOG0102|consensus 99.9 8.6E-24 1.9E-28 195.8 6.8 137 13-156 76-233 (640)
17 PRK11678 putative chaperone; P 99.9 5.1E-23 1.1E-27 191.2 11.6 131 14-156 90-230 (450)
18 KOG0101|consensus 99.9 2E-22 4.3E-27 191.0 9.3 138 14-156 56-218 (620)
19 KOG0104|consensus 99.8 9.2E-21 2E-25 180.6 8.9 108 49-161 131-241 (902)
20 KOG0103|consensus 99.8 1.2E-20 2.5E-25 178.9 9.0 107 47-158 108-219 (727)
21 TIGR02529 EutJ ethanolamine ut 99.7 2.5E-16 5.5E-21 135.2 10.0 95 48-154 33-127 (239)
22 PRK13929 rod-share determining 99.7 7.5E-16 1.6E-20 137.9 11.4 92 62-155 77-170 (335)
23 PRK13928 rod shape-determining 99.6 1.7E-15 3.7E-20 135.3 10.9 99 50-155 69-167 (336)
24 TIGR00904 mreB cell shape dete 99.5 3.6E-14 7.8E-19 126.5 11.5 93 62-156 79-171 (333)
25 PRK13927 rod shape-determining 99.5 4.1E-14 8.9E-19 125.9 11.0 91 62-155 78-168 (334)
26 PRK13930 rod shape-determining 99.5 1.5E-13 3.2E-18 122.1 11.2 92 62-155 81-172 (335)
27 PF06723 MreB_Mbl: MreB/Mbl pr 99.5 2E-13 4.3E-18 122.4 9.1 102 48-156 65-166 (326)
28 PRK15080 ethanolamine utilizat 99.4 3.5E-12 7.6E-17 111.2 10.8 86 62-154 69-154 (267)
29 COG1077 MreB Actin-like ATPase 99.3 2.6E-12 5.7E-17 114.0 8.2 122 28-156 49-174 (342)
30 COG4820 EutJ Ethanolamine util 98.8 4.5E-09 9.7E-14 88.5 3.1 87 62-155 74-160 (277)
31 PRK09472 ftsA cell division pr 98.4 5.1E-07 1.1E-11 83.5 7.2 57 94-153 166-222 (420)
32 TIGR01174 ftsA cell division p 98.4 6.4E-07 1.4E-11 81.1 7.3 59 94-154 157-215 (371)
33 cd00012 ACTIN Actin; An ubiqui 97.9 5.7E-05 1.2E-09 68.2 9.6 84 62-153 77-161 (371)
34 TIGR03739 PRTRC_D PRTRC system 97.9 4.1E-05 8.8E-10 68.3 7.2 74 80-153 101-185 (320)
35 smart00268 ACTIN Actin. ACTIN 97.9 0.00011 2.5E-09 66.2 10.0 82 62-153 77-161 (373)
36 COG0849 ftsA Cell division ATP 97.8 4.3E-05 9.3E-10 70.9 7.0 64 84-153 158-221 (418)
37 PRK13917 plasmid segregation p 97.4 0.00058 1.3E-08 61.7 8.3 71 83-153 114-203 (344)
38 PF00022 Actin: Actin; InterP 97.1 0.0025 5.5E-08 57.6 8.6 83 62-152 76-159 (393)
39 PF07520 SrfB: Virulence facto 96.6 0.0081 1.7E-07 60.9 8.6 50 58-107 419-482 (1002)
40 TIGR01175 pilM type IV pilus a 96.6 0.0089 1.9E-07 53.3 8.0 59 94-153 142-206 (348)
41 PF06406 StbA: StbA protein; 96.6 0.0029 6.4E-08 56.5 4.8 43 110-154 141-183 (318)
42 PTZ00280 Actin-related protein 96.5 0.021 4.6E-07 52.6 10.2 71 82-152 103-177 (414)
43 PRK10719 eutA reactivating fac 96.4 0.0092 2E-07 56.2 7.1 89 62-154 64-165 (475)
44 KOG0679|consensus 96.3 0.023 4.9E-07 52.3 8.7 83 62-152 88-171 (426)
45 PF02541 Ppx-GppA: Ppx/GppA ph 96.0 0.017 3.7E-07 50.5 6.1 98 50-154 31-131 (285)
46 PTZ00004 actin-2; Provisional 95.9 0.026 5.7E-07 51.4 7.4 65 81-152 101-166 (378)
47 PRK10854 exopolyphosphatase; P 95.7 0.044 9.5E-07 52.2 8.2 98 50-154 56-156 (513)
48 PTZ00452 actin; Provisional 95.6 0.081 1.8E-06 48.3 9.2 65 81-152 100-165 (375)
49 PTZ00281 actin; Provisional 95.5 0.092 2E-06 47.9 9.3 63 81-150 101-164 (376)
50 PTZ00466 actin-like protein; P 95.5 0.089 1.9E-06 48.2 9.1 80 62-152 89-171 (380)
51 PRK11031 guanosine pentaphosph 95.3 0.078 1.7E-06 50.3 8.1 58 95-153 92-150 (496)
52 COG4457 SrfB Uncharacterized p 95.1 0.13 2.9E-06 50.5 9.0 54 51-105 420-487 (1014)
53 COG0145 HyuA N-methylhydantoin 95.0 0.1 2.3E-06 51.4 8.5 87 57-153 210-296 (674)
54 PF08841 DDR: Diol dehydratase 94.9 0.078 1.7E-06 47.2 6.4 60 95-156 95-155 (332)
55 TIGR03706 exo_poly_only exopol 94.8 0.15 3.2E-06 45.1 8.1 98 50-153 45-143 (300)
56 COG0248 GppA Exopolyphosphatas 94.6 0.17 3.6E-06 48.3 8.5 90 63-153 55-147 (492)
57 PF01968 Hydantoinase_A: Hydan 94.3 0.031 6.8E-07 49.4 2.6 43 109-153 53-95 (290)
58 KOG0797|consensus 93.9 0.28 6.1E-06 46.8 8.1 65 82-153 228-293 (618)
59 PLN02666 5-oxoprolinase 90.0 0.25 5.4E-06 52.0 3.2 41 112-152 290-331 (1275)
60 PF11104 PilM_2: Type IV pilus 88.5 1.2 2.7E-05 39.8 6.2 60 94-153 135-198 (340)
61 COG5277 Actin and related prot 87.8 3.1 6.8E-05 39.2 8.6 85 62-152 86-173 (444)
62 TIGR03123 one_C_unchar_1 proba 84.1 0.79 1.7E-05 41.4 2.5 20 134-153 127-146 (318)
63 TIGR00744 ROK_glcA_fam ROK fam 82.7 4 8.6E-05 35.7 6.4 71 80-152 57-140 (318)
64 COG2069 CdhD CO dehydrogenase/ 82.7 2.4 5.2E-05 38.2 4.9 79 66-150 240-328 (403)
65 cd06007 R3H_DEXH_helicase R3H 80.6 5.2 0.00011 27.2 4.9 30 83-112 16-45 (59)
66 PF08735 DUF1786: Putative pyr 80.5 9 0.0002 33.6 7.6 72 78-153 111-185 (254)
67 PF00480 ROK: ROK family; Int 79.9 3.9 8.5E-05 32.5 5.0 45 106-152 90-134 (179)
68 PF06277 EutA: Ethanolamine ut 79.8 8.1 0.00018 36.8 7.6 94 62-155 61-163 (473)
69 PRK09557 fructokinase; Reviewe 76.9 11 0.00023 32.9 7.2 40 105-145 94-133 (301)
70 cd02640 R3H_NRF R3H domain of 76.8 12 0.00025 25.5 5.8 42 70-112 5-46 (60)
71 cd03012 TlpA_like_DipZ_like Tl 76.3 24 0.00051 26.4 8.1 71 58-128 34-104 (126)
72 cd02641 R3H_Smubp-2_like R3H d 72.7 16 0.00034 24.7 5.6 42 70-112 5-46 (60)
73 PF00815 Histidinol_dh: Histid 71.7 18 0.00038 33.9 7.5 87 62-153 123-227 (412)
74 cd02646 R3H_G-patch R3H domain 71.1 11 0.00023 25.2 4.5 42 68-112 3-44 (58)
75 PF04147 Nop14: Nop14-like fam 68.6 1.6 3.4E-05 44.3 -0.1 7 62-68 186-192 (840)
76 PF14450 FtsA: Cell division p 68.5 5.4 0.00012 30.3 2.9 20 137-156 1-20 (120)
77 cd02639 R3H_RRM R3H domain of 66.0 12 0.00026 25.5 3.9 31 82-112 16-46 (60)
78 PF13941 MutL: MutL protein 65.6 4.7 0.0001 38.2 2.5 59 94-153 197-266 (457)
79 KOG0676|consensus 65.3 16 0.00036 33.7 5.8 58 82-148 100-158 (372)
80 KOG1385|consensus 64.8 6.9 0.00015 36.7 3.3 91 62-152 119-230 (453)
81 KOG1832|consensus 60.5 3.2 6.9E-05 42.6 0.3 9 140-148 1363-1371(1516)
82 PF00349 Hexokinase_1: Hexokin 60.3 8.7 0.00019 32.4 2.9 26 133-158 61-86 (206)
83 KOG4816|consensus 60.1 12 0.00026 27.6 3.2 62 17-78 6-68 (98)
84 PRK13310 N-acetyl-D-glucosamin 59.3 52 0.0011 28.6 7.8 40 105-145 94-133 (303)
85 KOG2697|consensus 57.2 18 0.00039 32.8 4.4 74 80-153 156-251 (446)
86 PRK00877 hisD bifunctional his 57.0 21 0.00044 33.7 5.0 73 80-153 150-240 (425)
87 COG1214 Inactive homolog of me 56.9 63 0.0014 27.4 7.6 76 80-157 58-134 (220)
88 PTZ00415 transmission-blocking 56.7 5.2 0.00011 43.6 1.1 8 145-152 125-132 (2849)
89 PF02724 CDC45: CDC45-like pro 55.5 7 0.00015 38.4 1.7 16 134-149 96-111 (622)
90 cd06572 Histidinol_dh Histidin 54.6 44 0.00096 31.1 6.7 74 80-153 122-213 (390)
91 PF01150 GDA1_CD39: GDA1/CD39 54.4 16 0.00035 33.8 3.9 93 62-154 65-183 (434)
92 PF14628 DUF4454: Domain of un 54.4 16 0.00035 30.9 3.5 21 83-103 53-73 (216)
93 PRK05082 N-acetylmannosamine k 54.2 47 0.001 28.6 6.6 38 106-145 95-132 (291)
94 PRK13770 histidinol dehydrogen 54.1 43 0.00093 31.5 6.6 73 80-153 140-230 (416)
95 PF14283 DUF4366: Domain of un 53.4 7.5 0.00016 33.3 1.4 19 142-162 172-190 (218)
96 COG4012 Uncharacterized protei 53.2 40 0.00088 30.1 5.9 60 88-153 186-245 (342)
97 TIGR00069 hisD histidinol dehy 53.1 36 0.00079 31.7 5.9 74 80-153 118-209 (393)
98 COG5026 Hexokinase [Carbohydra 53.1 14 0.0003 35.0 3.2 25 133-157 73-97 (466)
99 COG1940 NagC Transcriptional r 50.2 58 0.0013 28.4 6.6 40 105-145 104-143 (314)
100 PRK12447 histidinol dehydrogen 49.3 40 0.00086 31.8 5.6 73 80-153 145-235 (426)
101 COG0141 HisD Histidinol dehydr 49.1 15 0.00033 34.4 2.8 73 80-153 146-236 (425)
102 PF03066 Nucleoplasmin: Nucleo 49.1 22 0.00047 28.6 3.4 21 136-156 88-108 (149)
103 PF14450 FtsA: Cell division p 48.7 6 0.00013 30.0 0.1 59 62-124 48-119 (120)
104 PRK13311 N-acetyl-D-glucosamin 48.4 95 0.0021 26.3 7.5 39 106-145 95-133 (256)
105 PTZ00415 transmission-blocking 47.9 7.2 0.00016 42.6 0.5 15 183-197 185-199 (2849)
106 COG4819 EutA Ethanolamine util 47.7 26 0.00055 32.4 3.9 89 62-154 63-164 (473)
107 PRK09698 D-allose kinase; Prov 47.7 1.1E+02 0.0023 26.5 7.9 38 106-145 103-140 (302)
108 KOG1832|consensus 44.3 7.9 0.00017 39.8 0.2 10 133-142 1370-1379(1516)
109 PRK00292 glk glucokinase; Prov 43.9 78 0.0017 27.8 6.4 42 105-146 88-139 (316)
110 TIGR00241 CoA_E_activ CoA-subs 42.9 78 0.0017 26.9 6.1 36 114-153 74-109 (248)
111 TIGR01319 glmL_fam conserved h 42.5 17 0.00037 34.6 2.1 59 94-152 193-266 (463)
112 COG1548 Predicted transcriptio 41.8 47 0.001 29.7 4.5 21 133-153 128-148 (330)
113 PLN02914 hexokinase 41.3 47 0.001 31.8 4.9 95 57-158 21-118 (490)
114 COG0100 RpsK Ribosomal protein 40.9 1.1E+02 0.0023 24.2 6.0 56 57-116 57-112 (129)
115 PLN02926 histidinol dehydrogen 40.7 55 0.0012 30.9 5.1 74 80-153 150-244 (431)
116 PRK14101 bifunctional glucokin 40.7 46 0.001 32.5 4.8 22 103-124 101-122 (638)
117 PF02724 CDC45: CDC45-like pro 40.3 2.4E+02 0.0053 27.8 9.7 33 107-141 50-82 (622)
118 PRK10382 alkyl hydroperoxide r 38.5 2E+02 0.0043 23.6 7.7 81 62-145 47-130 (187)
119 KOG1154|consensus 37.2 62 0.0013 28.5 4.5 54 69-122 103-157 (285)
120 TIGR00370 conserved hypothetic 36.6 11 0.00024 31.7 -0.1 65 51-120 49-113 (202)
121 PF14238 DUF4340: Domain of un 36.5 1.2E+02 0.0025 24.1 6.0 59 84-146 2-60 (191)
122 smart00842 FtsA Cell division 36.2 27 0.00058 28.3 2.1 31 94-124 156-186 (187)
123 COG4972 PilM Tfp pilus assembl 36.2 61 0.0013 29.7 4.5 58 98-155 152-213 (354)
124 PRK13318 pantothenate kinase; 35.8 1.8E+02 0.004 24.8 7.4 14 135-148 124-137 (258)
125 PF06635 NolV: Nodulation prot 35.0 39 0.00085 28.7 2.9 68 51-128 110-177 (207)
126 PRK13660 hypothetical protein; 35.0 87 0.0019 26.0 5.0 85 51-142 47-139 (182)
127 PRK09604 UGMP family protein; 34.8 1.2E+02 0.0026 27.2 6.3 62 80-142 72-136 (332)
128 PTZ00107 hexokinase; Provision 34.7 40 0.00086 32.1 3.2 25 133-157 72-96 (464)
129 PRK13329 pantothenate kinase; 33.9 2E+02 0.0042 24.9 7.2 14 134-147 118-131 (249)
130 PRK13320 pantothenate kinase; 33.6 1.2E+02 0.0027 26.0 5.9 14 134-147 113-126 (244)
131 KOG1939|consensus 33.3 17 0.00037 37.1 0.6 40 114-153 283-323 (1247)
132 PRK13434 F0F1 ATP synthase sub 33.1 2E+02 0.0044 23.3 6.9 73 62-151 87-162 (184)
133 cd07213 Pat17_PNPLA8_PNPLA9_li 32.6 38 0.00082 29.6 2.6 38 114-151 174-213 (288)
134 PRK05758 F0F1 ATP synthase sub 32.1 2.4E+02 0.0053 22.5 7.2 46 62-109 89-135 (177)
135 PF01424 R3H: R3H domain; Int 31.7 1.5E+02 0.0033 19.4 5.0 27 85-112 22-48 (63)
136 PRK12408 glucokinase; Provisio 31.5 1.7E+02 0.0037 26.1 6.7 42 105-146 106-157 (336)
137 PTZ00107 hexokinase; Provision 30.9 1.4E+02 0.003 28.4 6.2 61 92-152 192-254 (464)
138 PRK13599 putative peroxiredoxi 30.6 2.3E+02 0.005 23.7 7.0 79 62-143 44-128 (215)
139 TIGR00555 panK_eukar pantothen 30.5 2.7E+02 0.0058 24.7 7.6 74 49-127 199-278 (279)
140 KOG0681|consensus 30.0 3.4E+02 0.0075 26.7 8.6 85 65-152 96-185 (645)
141 KOG0127|consensus 29.7 59 0.0013 31.8 3.5 11 106-116 157-167 (678)
142 PF11705 RNA_pol_3_Rpc31: DNA- 29.1 21 0.00046 30.4 0.4 6 92-97 90-95 (233)
143 cd03016 PRX_1cys Peroxiredoxin 28.5 2.6E+02 0.0056 22.9 6.9 79 62-143 41-126 (203)
144 cd02969 PRX_like1 Peroxiredoxi 28.5 2.9E+02 0.0062 21.6 8.4 82 58-143 36-119 (171)
145 COG1126 GlnQ ABC-type polar am 28.5 52 0.0011 28.6 2.6 38 85-122 130-167 (240)
146 PLN02362 hexokinase 28.4 57 0.0012 31.4 3.2 25 134-158 94-118 (509)
147 PF00005 ABC_tran: ABC transpo 28.2 81 0.0018 23.4 3.5 31 90-120 107-137 (137)
148 TIGR00674 dapA dihydrodipicoli 28.0 1.7E+02 0.0036 25.4 5.9 55 67-122 80-137 (285)
149 PF03610 EIIA-man: PTS system 28.0 2.5E+02 0.0054 20.7 6.6 15 133-147 57-71 (116)
150 COG4671 Predicted glycosyl tra 27.3 78 0.0017 29.4 3.7 83 62-156 232-315 (400)
151 cd03017 PRX_BCP Peroxiredoxin 27.2 2.6E+02 0.0056 20.6 8.0 62 62-129 39-100 (140)
152 PRK13190 putative peroxiredoxi 26.7 3.6E+02 0.0078 22.1 8.1 65 62-128 43-109 (202)
153 PLN02596 hexokinase-like 25.8 67 0.0014 30.8 3.1 26 134-159 95-120 (490)
154 KOG1189|consensus 25.7 25 0.00054 35.6 0.2 20 7-26 644-663 (960)
155 PF06908 DUF1273: Protein of u 25.2 53 0.0012 27.0 2.1 126 3-142 2-139 (177)
156 PRK14878 UGMP family protein; 24.8 3.5E+02 0.0076 24.1 7.4 70 80-153 65-137 (323)
157 KOG3064|consensus 24.6 27 0.00058 30.9 0.2 11 84-94 133-143 (303)
158 KOG2413|consensus 24.6 48 0.001 32.5 1.9 45 107-151 364-417 (606)
159 PRK08187 pyruvate kinase; Vali 24.6 1.3E+02 0.0027 29.0 4.7 92 6-114 68-165 (493)
160 PRK13189 peroxiredoxin; Provis 24.5 4.1E+02 0.0089 22.3 7.5 65 62-128 51-117 (222)
161 PRK13441 F0F1 ATP synthase sub 24.4 3.4E+02 0.0073 21.8 6.7 74 62-152 90-166 (180)
162 COG4012 Uncharacterized protei 24.1 65 0.0014 28.8 2.5 19 136-154 2-20 (342)
163 PRK08474 F0F1 ATP synthase sub 23.9 3.9E+02 0.0084 21.5 7.7 73 62-151 86-159 (176)
164 PRK13436 F0F1 ATP synthase sub 23.8 3.9E+02 0.0085 21.6 7.3 73 62-151 91-166 (179)
165 PF07576 BRAP2: BRCA1-associat 23.7 1.5E+02 0.0033 22.5 4.2 36 81-116 13-48 (110)
166 cd03260 ABC_PstB_phosphate_tra 23.6 91 0.002 25.7 3.3 34 89-122 139-172 (227)
167 TIGR01145 ATP_synt_delta ATP s 23.5 3.8E+02 0.0082 21.3 7.4 75 62-152 85-162 (172)
168 PRK06032 fliH flagellar assemb 23.3 2.7E+02 0.0059 23.0 6.1 56 83-151 129-185 (199)
169 PRK14725 pyruvate kinase; Prov 23.3 1E+02 0.0022 30.4 3.9 96 5-114 72-171 (608)
170 PRK13317 pantothenate kinase; 23.3 2.4E+02 0.0051 24.8 5.9 74 49-127 191-270 (277)
171 KOG1185|consensus 23.1 2.8E+02 0.006 27.0 6.6 47 76-129 26-74 (571)
172 KOG1386|consensus 23.0 82 0.0018 30.3 3.1 98 52-155 59-182 (501)
173 TIGR03825 FliH_bacil flagellar 23.0 3.1E+02 0.0067 23.5 6.5 58 81-151 175-233 (255)
174 cd07035 TPP_PYR_POX_like Pyrim 23.0 1.2E+02 0.0027 23.2 3.7 60 82-146 12-71 (155)
175 COG4172 ABC-type uncharacteriz 22.8 82 0.0018 30.1 3.0 39 84-122 419-457 (534)
176 TIGR00036 dapB dihydrodipicoli 22.6 2.3E+02 0.0049 24.5 5.7 37 82-119 93-129 (266)
177 cd03259 ABC_Carb_Solutes_like 22.6 85 0.0018 25.6 2.8 36 87-122 126-161 (213)
178 PF00370 FGGY_N: FGGY family o 22.5 95 0.0021 25.9 3.2 21 136-156 1-21 (245)
179 PLN02405 hexokinase 22.4 87 0.0019 30.1 3.2 25 134-158 94-118 (497)
180 PF10982 DUF2789: Protein of u 22.4 82 0.0018 22.5 2.3 24 82-105 35-58 (74)
181 COG0444 DppD ABC-type dipeptid 22.3 1.4E+02 0.003 27.1 4.2 41 82-122 144-184 (316)
182 KOG4156|consensus 22.1 27 0.00058 34.9 -0.3 11 134-144 552-562 (1329)
183 cd03223 ABCD_peroxisomal_ALDP 22.0 1.2E+02 0.0025 24.0 3.5 35 88-122 88-122 (166)
184 PF08759 DUF1792: Domain of un 22.0 1.6E+02 0.0034 25.5 4.4 79 62-145 102-199 (225)
185 TIGR02673 FtsE cell division A 22.0 90 0.002 25.4 2.9 36 87-122 133-168 (214)
186 cd03225 ABC_cobalt_CbiO_domain 21.9 1E+02 0.0022 24.9 3.2 36 87-122 130-165 (211)
187 smart00842 FtsA Cell division 21.8 1.4E+02 0.003 24.0 4.0 30 62-91 48-77 (187)
188 cd03298 ABC_ThiQ_thiamine_tran 21.7 1.1E+02 0.0023 25.0 3.3 37 86-122 123-159 (211)
189 PRK01395 V-type ATP synthase s 21.6 1.9E+02 0.0042 21.6 4.4 48 62-110 52-102 (104)
190 cd00006 PTS_IIA_man PTS_IIA, P 21.6 3.5E+02 0.0076 20.2 7.4 27 67-93 13-39 (122)
191 COG4161 ArtP ABC-type arginine 21.6 1.4E+02 0.003 25.2 3.8 27 94-122 146-172 (242)
192 PTZ00288 glucokinase 1; Provis 21.5 92 0.002 29.1 3.1 47 79-125 89-146 (405)
193 PRK15067 ethanolamine ammonia 21.3 1.4E+02 0.003 28.3 4.2 76 62-146 202-293 (461)
194 TIGR01036 pyrD_sub2 dihydrooro 21.1 4.5E+02 0.0097 23.6 7.4 57 61-117 190-246 (335)
195 PF06940 DUF1287: Domain of un 21.0 2.1E+02 0.0046 23.5 4.7 76 83-158 19-133 (164)
196 KOG0338|consensus 21.0 28 0.0006 33.9 -0.4 38 83-123 66-103 (691)
197 PF08541 ACP_syn_III_C: 3-Oxoa 20.9 3E+02 0.0064 19.1 5.3 54 97-150 21-85 (90)
198 PRK13324 pantothenate kinase; 20.7 2.6E+02 0.0056 24.3 5.6 14 134-147 123-136 (258)
199 cd03292 ABC_FtsE_transporter F 20.7 98 0.0021 25.1 2.9 36 87-122 132-167 (214)
200 PRK13322 pantothenate kinase; 20.7 2E+02 0.0043 24.7 4.8 13 135-147 116-128 (246)
201 TIGR01924 rsbW_low_gc serine-p 20.6 1.9E+02 0.0042 22.8 4.5 47 82-128 6-60 (159)
202 cd03235 ABC_Metallic_Cations A 20.5 1.2E+02 0.0025 24.7 3.3 36 87-122 128-163 (213)
203 TIGR01166 cbiO cobalt transpor 20.5 1E+02 0.0022 24.6 2.9 36 87-122 123-158 (190)
204 COG4598 HisP ABC-type histidin 20.3 89 0.0019 26.8 2.5 34 87-122 148-183 (256)
205 COG4883 Uncharacterized protei 20.3 2E+02 0.0043 26.4 4.8 21 110-130 319-339 (500)
206 cd03264 ABC_drug_resistance_li 20.2 1E+02 0.0022 25.0 2.9 36 87-122 126-161 (211)
207 KOG1834|consensus 20.1 49 0.0011 33.1 1.0 36 169-204 894-929 (952)
No 1
>KOG0100|consensus
Probab=99.96 E-value=6.9e-30 Score=230.43 Aligned_cols=136 Identities=51% Similarity=0.687 Sum_probs=120.2
Q ss_pred HhhhcccCcccchhhHhhhhhcCCCCC------------ccccee--------------cceeeccccCCCchHHHHHHH
Q psy471 14 KLRQNQPCQATDNNIGYLARSFEGPEW------------DYGHVR--------------LRKSFSPRCCHHSPRLFQLLT 67 (211)
Q Consensus 14 ~~a~~~~~~~p~n~~~~l~r~~~g~~~------------~~~~~~--------------~~k~~speel~~~~~~a~iL~ 67 (211)
..++++...+|.|.++-.+|.+ |+.| +|..+. ..|.|+|++| ++|+|.
T Consensus 85 dAAKNQ~~~NPenTiFD~KRLI-Gr~~~d~~vq~Dik~~Pfkvv~k~~kp~i~v~v~~g~~K~FtPeEi-----SaMiL~ 158 (663)
T KOG0100|consen 85 DAAKNQLTSNPENTIFDAKRLI-GRKFNDKSVQKDIKFLPFKVVNKDGKPYIQVKVGGGETKVFTPEEI-----SAMILT 158 (663)
T ss_pred hHhhcccccCcccceechHHHh-CcccCChhhhhhhhcCceEEEcCCCCccEEEEccCCcccccCHHHH-----HHHHHH
Confidence 5677888889999887776666 5543 232221 2689999999 999999
Q ss_pred HHHHHHHHhhccccceeeEccCCCccHHHHHHHHHHHHHhCCceeEEeechhHHHHHcccccCCCCCceEEEeecCCCce
Q psy471 68 KMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVKLPKMLEPLL 147 (211)
Q Consensus 68 ~L~~~a~~~~g~~~~~vVItVPa~f~~~qR~al~~Aa~~aGl~~~~lv~EP~AAAl~y~~~~~~~~~~~vLV~D~GggT~ 147 (211)
+++++|+.++|..+.++|+||||||+++||+++++|..+||++++||||+|+|||++||+++. ...++|||||+|||||
T Consensus 159 KMKe~AEayLGkkv~~AVvTvPAYFNDAQrQATKDAGtIAgLnV~RIiNePTaAAIAYGLDKk-~gEknilVfDLGGGTF 237 (663)
T KOG0100|consen 159 KMKETAEAYLGKKVTHAVVTVPAYFNDAQRQATKDAGTIAGLNVVRIINEPTAAAIAYGLDKK-DGEKNILVFDLGGGTF 237 (663)
T ss_pred HHHHHHHHHhCCcccceEEecchhcchHHHhhhcccceeccceEEEeecCccHHHHHhccccc-CCcceEEEEEcCCceE
Confidence 999999999999999999999999999999999999999999999999999999999999987 5688999999999999
Q ss_pred EEEEEeccc
Q psy471 148 VLTLRKKKK 156 (211)
Q Consensus 148 Dvsv~~~~~ 156 (211)
|+|++.++-
T Consensus 238 DVSlLtIdn 246 (663)
T KOG0100|consen 238 DVSLLTIDN 246 (663)
T ss_pred EEEEEEEcC
Confidence 999998764
No 2
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=7.4e-28 Score=229.41 Aligned_cols=135 Identities=47% Similarity=0.583 Sum_probs=119.9
Q ss_pred HhhhcccCcccchhhHhhhhhcCCCC-Cc-ccceecceeeccccCCCchHHHHHHHHHHHHHHHhhccccceeeEccCCC
Q psy471 14 KLRQNQPCQATDNNIGYLARSFEGPE-WD-YGHVRLRKSFSPRCCHHSPRLFQLLTKMKETAEAYLGHSVRDAVITVPAY 91 (211)
Q Consensus 14 ~~a~~~~~~~p~n~~~~l~r~~~g~~-~~-~~~~~~~k~~speel~~~~~~a~iL~~L~~~a~~~~g~~~~~vVItVPa~ 91 (211)
..+.++...+|.|.++.++|.++-.. .. ......++.|+|++| ++++|++|++.|+.+++..+..+|||||+|
T Consensus 56 ~~A~~q~~~~p~~t~~~~kr~~G~~~~~~~~~~~~~~~~~~~eei-----sa~~L~~lk~~ae~~lg~~v~~~VItVPay 130 (579)
T COG0443 56 QAAKRQAVDNPENTIFSIKRKIGRGSNGLKISVEVDGKKYTPEEI-----SAMILTKLKEDAEAYLGEKVTDAVITVPAY 130 (579)
T ss_pred HHHHHHhhhCCcceEEEEehhcCCCCCCCcceeeeCCeeeCHHHH-----HHHHHHHHHHHHHHhhCCCcceEEEEeCCC
Confidence 45666777888888888888876332 11 233344589999999 999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHHhCCceeEEeechhHHHHHcccccCCCCCceEEEeecCCCceEEEEEecc
Q psy471 92 FNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVKLPKMLEPLLVLTLRKKK 155 (211)
Q Consensus 92 f~~~qR~al~~Aa~~aGl~~~~lv~EP~AAAl~y~~~~~~~~~~~vLV~D~GggT~Dvsv~~~~ 155 (211)
|++.||+++++||.+||+++++|+|||+|||++|++.+. .+.+||||||||||||+||+++.
T Consensus 131 F~d~qR~at~~A~~iaGl~vlrlinEPtAAAlayg~~~~--~~~~vlV~DlGGGTfDvSll~~~ 192 (579)
T COG0443 131 FNDAQRQATKDAARIAGLNVLRLINEPTAAALAYGLDKG--KEKTVLVYDLGGGTFDVSLLEIG 192 (579)
T ss_pred CCHHHHHHHHHHHHHcCCCeEEEecchHHHHHHhHhccC--CCcEEEEEEcCCCCEEEEEEEEc
Confidence 999999999999999999999999999999999999988 88999999999999999999987
No 3
>PRK13411 molecular chaperone DnaK; Provisional
Probab=99.94 E-value=1.3e-26 Score=223.73 Aligned_cols=146 Identities=41% Similarity=0.560 Sum_probs=121.0
Q ss_pred cceehhhh------HHhhhcccCcccchhhHhhhhhcCCCC---------Ccc----------cceecceeeccccCCCc
Q psy471 5 LTIVSLED------VKLRQNQPCQATDNNIGYLARSFEGPE---------WDY----------GHVRLRKSFSPRCCHHS 59 (211)
Q Consensus 5 ~~~~s~~~------~~~a~~~~~~~p~n~~~~l~r~~~g~~---------~~~----------~~~~~~k~~speel~~~ 59 (211)
.|+++|.. ...|.++...+|.|.++.++|.++.+. +++ .....++.|+|++|
T Consensus 37 PS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~peei--- 113 (653)
T PRK13411 37 PSIVGFGKSGDRLVGQLAKRQAVTNAENTVYSIKRFIGRRWDDTEEERSRVPYTCVKGRDDTVNVQIRGRNYTPQEI--- 113 (653)
T ss_pred ceEEEEeCCCCEEEcHHHHHhhhhCcccchHHHHHHhCCCccchhHHhhcCCceEEecCCCceEEEECCEEECHHHH---
Confidence 45666632 334556666788888887877775331 111 12334678999999
Q ss_pred hHHHHHHHHHHHHHHHhhccccceeeEccCCCccHHHHHHHHHHHHHhCCceeEEeechhHHHHHcccccCCCCCceEEE
Q psy471 60 PRLFQLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVKL 139 (211)
Q Consensus 60 ~~~a~iL~~L~~~a~~~~g~~~~~vVItVPa~f~~~qR~al~~Aa~~aGl~~~~lv~EP~AAAl~y~~~~~~~~~~~vLV 139 (211)
++++|++|++.|..++|.++.++|||||++|++.||+++++||.+||+++++||+||+|||++|++.+. ...+++||
T Consensus 114 --~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa~~AGl~v~~li~EPtAAAl~y~~~~~-~~~~~vlV 190 (653)
T PRK13411 114 --SAMILQKLKQDAEAYLGEPVTQAVITVPAYFTDAQRQATKDAGTIAGLEVLRIINEPTAAALAYGLDKQ-DQEQLILV 190 (653)
T ss_pred --HHHHHHHHHHHHHHHhCCCcceEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEecchHHHHHHhccccc-CCCCEEEE
Confidence 999999999999999999999999999999999999999999999999999999999999999998764 34688999
Q ss_pred eecCCCceEEEEEeccc
Q psy471 140 PKMLEPLLVLTLRKKKK 156 (211)
Q Consensus 140 ~D~GggT~Dvsv~~~~~ 156 (211)
|||||||||+||+++.+
T Consensus 191 ~DlGgGT~dvsi~~~~~ 207 (653)
T PRK13411 191 FDLGGGTFDVSILQLGD 207 (653)
T ss_pred EEcCCCeEEEEEEEEeC
Confidence 99999999999999864
No 4
>PRK13410 molecular chaperone DnaK; Provisional
Probab=99.94 E-value=1.2e-26 Score=224.34 Aligned_cols=146 Identities=40% Similarity=0.542 Sum_probs=121.2
Q ss_pred ccceehhhh------HHhhhcccCcccchhhHhhhhhcCCCC---------Ccccce------------ecceeeccccC
Q psy471 4 LLTIVSLED------VKLRQNQPCQATDNNIGYLARSFEGPE---------WDYGHV------------RLRKSFSPRCC 56 (211)
Q Consensus 4 ~~~~~s~~~------~~~a~~~~~~~p~n~~~~l~r~~~g~~---------~~~~~~------------~~~k~~speel 56 (211)
+.|+++|.. ...|.++...+|.|.++.++|.++.+. +++... ..++.|+|++|
T Consensus 36 tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KRliG~~~~~~~~~~~~~~~~v~~~~~g~~~i~~~~~~~~~speel 115 (668)
T PRK13410 36 TPSVVGFTKDGELLVGQLARRQLVLNPQNTFYNLKRFIGRRYDELDPESKRVPYTIRRNEQGNVRIKCPRLEREFAPEEL 115 (668)
T ss_pred CceEEEEeCCCCEEECHHHHHhhHhCccceehHHhhhhCCCchhhHHhhccCCeEEEECCCCcEEEEEecCCeEEcHHHH
Confidence 345666642 334555566778888887888775431 122221 13578999999
Q ss_pred CCchHHHHHHHHHHHHHHHhhccccceeeEccCCCccHHHHHHHHHHHHHhCCceeEEeechhHHHHHcccccCCCCCce
Q psy471 57 HHSPRLFQLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERN 136 (211)
Q Consensus 57 ~~~~~~a~iL~~L~~~a~~~~g~~~~~vVItVPa~f~~~qR~al~~Aa~~aGl~~~~lv~EP~AAAl~y~~~~~~~~~~~ 136 (211)
++++|++|++.|..++|.++.++|||||++|++.||+++++||++||+++++||+||+|||++|++.+. .+++
T Consensus 116 -----~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa~~AGl~v~~li~EPtAAAlayg~~~~--~~~~ 188 (668)
T PRK13410 116 -----SAMILRKLADDASRYLGEPVTGAVITVPAYFNDSQRQATRDAGRIAGLEVERILNEPTAAALAYGLDRS--SSQT 188 (668)
T ss_pred -----HHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHHHHHcCCCeEEEecchHHHHHHhccccC--CCCE
Confidence 999999999999999999999999999999999999999999999999999999999999999998765 6789
Q ss_pred EEEeecCCCceEEEEEeccc
Q psy471 137 VKLPKMLEPLLVLTLRKKKK 156 (211)
Q Consensus 137 vLV~D~GggT~Dvsv~~~~~ 156 (211)
+|||||||||||+||+++.+
T Consensus 189 vlV~DlGgGT~Dvsv~~~~~ 208 (668)
T PRK13410 189 VLVFDLGGGTFDVSLLEVGN 208 (668)
T ss_pred EEEEECCCCeEEEEEEEEcC
Confidence 99999999999999999864
No 5
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=99.94 E-value=2e-26 Score=222.37 Aligned_cols=145 Identities=41% Similarity=0.534 Sum_probs=121.1
Q ss_pred cceehhhh-----HHhhhcccCcccchhhHhhhhhcCCCC-----------Ccccce-----------ecceeeccccCC
Q psy471 5 LTIVSLED-----VKLRQNQPCQATDNNIGYLARSFEGPE-----------WDYGHV-----------RLRKSFSPRCCH 57 (211)
Q Consensus 5 ~~~~s~~~-----~~~a~~~~~~~p~n~~~~l~r~~~g~~-----------~~~~~~-----------~~~k~~speel~ 57 (211)
.|+++|.+ ...|.++...+|.+.++.++|.++.+. |++... ..++.|+|++|
T Consensus 62 PS~V~f~~~~~lvG~~Ak~~~~~~p~~ti~~~KRliG~~~~d~~v~~~~~~~p~~vv~~~~~~~~i~~~~~~~~speei- 140 (657)
T PTZ00186 62 PSVVAFKGSEKLVGLAAKRQAITNPQSTFYAVKRLIGRRFEDEHIQKDIKNVPYKIVRAGNGDAWVQDGNGKQYSPSQI- 140 (657)
T ss_pred ceEEEECCCCEEEcHHHHHhhhhCchhHHHHHHHHhccccccHHHHHhhccCcEEEEEcCCCceEEEeCCCeEEcHHHH-
Confidence 35555542 334555666788888888888885331 233221 14688999999
Q ss_pred CchHHHHHHHHHHHHHHHhhccccceeeEccCCCccHHHHHHHHHHHHHhCCceeEEeechhHHHHHcccccCCCCCceE
Q psy471 58 HSPRLFQLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNV 137 (211)
Q Consensus 58 ~~~~~a~iL~~L~~~a~~~~g~~~~~vVItVPa~f~~~qR~al~~Aa~~aGl~~~~lv~EP~AAAl~y~~~~~~~~~~~v 137 (211)
++++|++|+..|+.++|.++..+|||||+||++.||+++++||.+||+++++||+||+|||++|++.+. ..+++
T Consensus 141 ----sa~iL~~Lk~~Ae~~lg~~v~~aVITVPayF~~~qR~at~~Aa~~AGl~v~rlInEPtAAAlayg~~~~--~~~~v 214 (657)
T PTZ00186 141 ----GAFVLEKMKETAENFLGHKVSNAVVTCPAYFNDAQRQATKDAGTIAGLNVIRVVNEPTAAALAYGMDKT--KDSLI 214 (657)
T ss_pred ----HHHHHHHHHHHHHHHhCCccceEEEEECCCCChHHHHHHHHHHHHcCCCeEEEEcChHHHHHHHhccCC--CCCEE
Confidence 999999999999999999999999999999999999999999999999999999999999999998765 57899
Q ss_pred EEeecCCCceEEEEEeccc
Q psy471 138 KLPKMLEPLLVLTLRKKKK 156 (211)
Q Consensus 138 LV~D~GggT~Dvsv~~~~~ 156 (211)
|||||||||||+||+++.+
T Consensus 215 lV~DlGGGT~DvSil~~~~ 233 (657)
T PTZ00186 215 AVYDLGGGTFDISVLEIAG 233 (657)
T ss_pred EEEECCCCeEEEEEEEEeC
Confidence 9999999999999999864
No 6
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=99.93 E-value=2.8e-26 Score=221.67 Aligned_cols=146 Identities=41% Similarity=0.557 Sum_probs=120.8
Q ss_pred ccceehhhh------HHhhhcccCcccchhhHhhhhhcCCCC-----------Cccc----------ceecceeeccccC
Q psy471 4 LLTIVSLED------VKLRQNQPCQATDNNIGYLARSFEGPE-----------WDYG----------HVRLRKSFSPRCC 56 (211)
Q Consensus 4 ~~~~~s~~~------~~~a~~~~~~~p~n~~~~l~r~~~g~~-----------~~~~----------~~~~~k~~speel 56 (211)
+.++++|.. ...|.++...+|.|.++.++|.++.+. +++. ....++.|+|++|
T Consensus 75 tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~speel 154 (663)
T PTZ00400 75 TPSVVAFTEDGQRLVGIVAKRQAVTNPENTVFATKRLIGRRYDEDATKKEQKILPYKIVRASNGDAWIEAQGKKYSPSQI 154 (663)
T ss_pred cCeEEEEeCCCCEEECHHHHHhHHhCCcceehhhhhhcCCCcCcHHHHhhhccCCeEEEecCCCceEEEECCEEECHHHH
Confidence 345666632 334555566778888777777775331 1221 1234678999999
Q ss_pred CCchHHHHHHHHHHHHHHHhhccccceeeEccCCCccHHHHHHHHHHHHHhCCceeEEeechhHHHHHcccccCCCCCce
Q psy471 57 HHSPRLFQLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERN 136 (211)
Q Consensus 57 ~~~~~~a~iL~~L~~~a~~~~g~~~~~vVItVPa~f~~~qR~al~~Aa~~aGl~~~~lv~EP~AAAl~y~~~~~~~~~~~ 136 (211)
++++|++|++.|..++|.++..+|||||++|++.||+++++||.+||+++++||+||+|||++|++.+. .+++
T Consensus 155 -----~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAAlay~~~~~--~~~~ 227 (663)
T PTZ00400 155 -----GAFVLEKMKETAESYLGRKVKQAVITVPAYFNDSQRQATKDAGKIAGLDVLRIINEPTAAALAFGMDKN--DGKT 227 (663)
T ss_pred -----HHHHHHHHHHHHHHHhCCCCceEEEEECCCCCHHHHHHHHHHHHHcCCceEEEeCchHHHHHHhccccC--CCcE
Confidence 999999999999999999999999999999999999999999999999999999999999999998765 6789
Q ss_pred EEEeecCCCceEEEEEeccc
Q psy471 137 VKLPKMLEPLLVLTLRKKKK 156 (211)
Q Consensus 137 vLV~D~GggT~Dvsv~~~~~ 156 (211)
+|||||||||||+||+++.+
T Consensus 228 vlV~DlGgGT~DvSv~~~~~ 247 (663)
T PTZ00400 228 IAVYDLGGGTFDISILEILG 247 (663)
T ss_pred EEEEeCCCCeEEEEEEEecC
Confidence 99999999999999999864
No 7
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=99.93 E-value=7e-26 Score=217.53 Aligned_cols=145 Identities=42% Similarity=0.585 Sum_probs=121.7
Q ss_pred cceehhh-h-----HHhhhcccCcccchhhHhhhhhcCCCC---------Ccc----------cceecceeeccccCCCc
Q psy471 5 LTIVSLE-D-----VKLRQNQPCQATDNNIGYLARSFEGPE---------WDY----------GHVRLRKSFSPRCCHHS 59 (211)
Q Consensus 5 ~~~~s~~-~-----~~~a~~~~~~~p~n~~~~l~r~~~g~~---------~~~----------~~~~~~k~~speel~~~ 59 (211)
.|+++|. + ...|.++...+|.+.++.++|.++.+. +++ .....++.|+|++|
T Consensus 37 PS~V~f~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~iG~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~peel--- 113 (627)
T PRK00290 37 PSVVAFTKDGERLVGQPAKRQAVTNPENTIFSIKRLMGRRDEEVQKDIKLVPYKIVKADNGDAWVEIDGKKYTPQEI--- 113 (627)
T ss_pred ceEEEEeCCCCEEEcHHHHHhhhhCchhhHHHHHHHhCCCchHHHHHhhcCCeEEEEcCCCceEEEECCEEEcHHHH---
Confidence 3566664 2 334555666788888888888886441 111 12335678999999
Q ss_pred hHHHHHHHHHHHHHHHhhccccceeeEccCCCccHHHHHHHHHHHHHhCCceeEEeechhHHHHHcccccCCCCCceEEE
Q psy471 60 PRLFQLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVKL 139 (211)
Q Consensus 60 ~~~a~iL~~L~~~a~~~~g~~~~~vVItVPa~f~~~qR~al~~Aa~~aGl~~~~lv~EP~AAAl~y~~~~~~~~~~~vLV 139 (211)
++++|++|+..|.+++|.++..+|||||++|++.||+++++||.+||+++++||+||+|||++|++.+. .++++||
T Consensus 114 --~a~iL~~lk~~ae~~~g~~v~~~VItVPa~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAAl~y~~~~~--~~~~vlV 189 (627)
T PRK00290 114 --SAMILQKLKKDAEDYLGEKVTEAVITVPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKK--GDEKILV 189 (627)
T ss_pred --HHHHHHHHHHHHHHHhCCCCceEEEEECCCCCHHHHHHHHHHHHHcCCceEEEecchHHHHHHhhhccC--CCCEEEE
Confidence 999999999999999999999999999999999999999999999999999999999999999998764 5789999
Q ss_pred eecCCCceEEEEEeccc
Q psy471 140 PKMLEPLLVLTLRKKKK 156 (211)
Q Consensus 140 ~D~GggT~Dvsv~~~~~ 156 (211)
|||||||||+||+++.+
T Consensus 190 ~D~GggT~dvsv~~~~~ 206 (627)
T PRK00290 190 YDLGGGTFDVSILEIGD 206 (627)
T ss_pred EECCCCeEEEEEEEEeC
Confidence 99999999999999853
No 8
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=99.93 E-value=3.8e-26 Score=220.36 Aligned_cols=147 Identities=46% Similarity=0.640 Sum_probs=119.3
Q ss_pred cceehhhh-----HHhhhcccCcccchhhHhhhhhcCCCC-----------Ccccce--------------ecceeeccc
Q psy471 5 LTIVSLED-----VKLRQNQPCQATDNNIGYLARSFEGPE-----------WDYGHV--------------RLRKSFSPR 54 (211)
Q Consensus 5 ~~~~s~~~-----~~~a~~~~~~~p~n~~~~l~r~~~g~~-----------~~~~~~--------------~~~k~~spe 54 (211)
.|+++|.+ ...|.++...+|.|.++.++|.++-+. |++... ...+.|+|+
T Consensus 39 PS~V~f~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~pe 118 (653)
T PTZ00009 39 PSYVAFTDTERLIGDAAKNQVARNPENTVFDAKRLIGRKFDDSVVQSDMKHWPFKVTTGGDDKPMIEVTYQGEKKTFHPE 118 (653)
T ss_pred CcEEEECCCCEEEcHHHHHhhhhCcccEEhhhHHHhCCCCCchhHhhhhhcCceEEEEcCCCceEEEEEeCCceEEECHH
Confidence 35555542 233444555677787777777774321 222211 124789999
Q ss_pred cCCCchHHHHHHHHHHHHHHHhhccccceeeEccCCCccHHHHHHHHHHHHHhCCceeEEeechhHHHHHcccccCCCCC
Q psy471 55 CCHHSPRLFQLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGE 134 (211)
Q Consensus 55 el~~~~~~a~iL~~L~~~a~~~~g~~~~~vVItVPa~f~~~qR~al~~Aa~~aGl~~~~lv~EP~AAAl~y~~~~~~~~~ 134 (211)
+| ++++|++|++.|++++|.++.++|||||++|++.||+++++||++||+++++||+||+|||++|++.+....+
T Consensus 119 el-----~a~iL~~lk~~ae~~~g~~v~~~VItVPa~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAAl~y~~~~~~~~~ 193 (653)
T PTZ00009 119 EI-----SSMVLQKMKEIAEAYLGKQVKDAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLDKKGDGE 193 (653)
T ss_pred HH-----HHHHHHHHHHHHHHHhCCCcceeEEEeCCCCCHHHHHHHHHHHHHcCCceeEEecchHHHHHHHhhhccCCCC
Confidence 99 9999999999999999999999999999999999999999999999999999999999999999987654457
Q ss_pred ceEEEeecCCCceEEEEEeccc
Q psy471 135 RNVKLPKMLEPLLVLTLRKKKK 156 (211)
Q Consensus 135 ~~vLV~D~GggT~Dvsv~~~~~ 156 (211)
+++|||||||||||+||+++.+
T Consensus 194 ~~vlv~D~GggT~dvsv~~~~~ 215 (653)
T PTZ00009 194 KNVLIFDLGGGTFDVSLLTIED 215 (653)
T ss_pred CEEEEEECCCCeEEEEEEEEeC
Confidence 8999999999999999999854
No 9
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=99.93 E-value=6.7e-26 Score=216.28 Aligned_cols=146 Identities=42% Similarity=0.564 Sum_probs=121.5
Q ss_pred cceehhh-h-----HHhhhcccCcccchhhHhhhhhcCCCC---------Ccc---------cceecceeeccccCCCch
Q psy471 5 LTIVSLE-D-----VKLRQNQPCQATDNNIGYLARSFEGPE---------WDY---------GHVRLRKSFSPRCCHHSP 60 (211)
Q Consensus 5 ~~~~s~~-~-----~~~a~~~~~~~p~n~~~~l~r~~~g~~---------~~~---------~~~~~~k~~speel~~~~ 60 (211)
.|+++|. + ...|.++...+|.+.++.++|.++.+. +++ .....++.|+|++|
T Consensus 35 PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~iG~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~peel---- 110 (595)
T TIGR02350 35 PSVVAFTKNGERLVGQPAKRQAVTNPENTIYSIKRFMGRRFDEVTEEAKRVPYKVVGDGGDVRVKVDGKEYTPQEI---- 110 (595)
T ss_pred CeEEEEeCCCCEEECHHHHHhhhhCchhhhHHHHHHhCCCchHHHHHhhcCCeeEEcCCCceEEEECCEEecHHHH----
Confidence 4566664 2 334555566788888888888775431 111 22345788999999
Q ss_pred HHHHHHHHHHHHHHHhhccccceeeEccCCCccHHHHHHHHHHHHHhCCceeEEeechhHHHHHcccccCCCCCceEEEe
Q psy471 61 RLFQLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVKLP 140 (211)
Q Consensus 61 ~~a~iL~~L~~~a~~~~g~~~~~vVItVPa~f~~~qR~al~~Aa~~aGl~~~~lv~EP~AAAl~y~~~~~~~~~~~vLV~ 140 (211)
++++|++|+..|..++|.++..+|||||++|++.||+++++||.+||+++++||+||+|||++|++.+. ..++++|||
T Consensus 111 -~a~~L~~l~~~a~~~~~~~v~~~VItVPa~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAAl~y~~~~~-~~~~~vlV~ 188 (595)
T TIGR02350 111 -SAMILQKLKKDAEAYLGEKVTEAVITVPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKS-KKDEKILVF 188 (595)
T ss_pred -HHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHHHHcCCceEEEecchHHHHHHHhhccc-CCCcEEEEE
Confidence 999999999999999999999999999999999999999999999999999999999999999998763 367899999
Q ss_pred ecCCCceEEEEEeccc
Q psy471 141 KMLEPLLVLTLRKKKK 156 (211)
Q Consensus 141 D~GggT~Dvsv~~~~~ 156 (211)
||||||||+||+++.+
T Consensus 189 D~Gggt~dvsv~~~~~ 204 (595)
T TIGR02350 189 DLGGGTFDVSILEIGD 204 (595)
T ss_pred ECCCCeEEEEEEEecC
Confidence 9999999999999863
No 10
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=99.93 E-value=7.9e-26 Score=216.32 Aligned_cols=145 Identities=39% Similarity=0.513 Sum_probs=120.4
Q ss_pred cceehhh-h-----HHhhhcccCcccchhhHhhhhhcCCCC--------Ccccce----------ecceeeccccCCCch
Q psy471 5 LTIVSLE-D-----VKLRQNQPCQATDNNIGYLARSFEGPE--------WDYGHV----------RLRKSFSPRCCHHSP 60 (211)
Q Consensus 5 ~~~~s~~-~-----~~~a~~~~~~~p~n~~~~l~r~~~g~~--------~~~~~~----------~~~k~~speel~~~~ 60 (211)
.|+++|. + ...|.++...+|.+.+..++|.++.+. +++... ..++.|+|++|
T Consensus 34 PS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~Kr~iG~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ei---- 109 (599)
T TIGR01991 34 PSVVRYLKDGGVEVGKEALAAAAEDPKNTISSVKRLMGRSIEDIKTFSILPYRFVDGPGEMVRLRTVQGTVTPVEV---- 109 (599)
T ss_pred CeEEEEeCCCCEEecHHHHHhhhhChhhhHHHHHHHhCCCccchhhcccCCEEEEEcCCCceEEEeCCCEEcHHHH----
Confidence 3566553 2 344555566678888888888885432 133221 12457999999
Q ss_pred HHHHHHHHHHHHHHHhhccccceeeEccCCCccHHHHHHHHHHHHHhCCceeEEeechhHHHHHcccccCCCCCceEEEe
Q psy471 61 RLFQLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVKLP 140 (211)
Q Consensus 61 ~~a~iL~~L~~~a~~~~g~~~~~vVItVPa~f~~~qR~al~~Aa~~aGl~~~~lv~EP~AAAl~y~~~~~~~~~~~vLV~ 140 (211)
++++|++|++.|..++|.++..+|||||++|++.||+++++||.+||+++++||+||+|||++|++.+. .++++|||
T Consensus 110 -~a~iL~~lk~~a~~~lg~~v~~~VItVPa~f~~~qR~a~~~Aa~~AGl~v~~li~EPtAAAlay~~~~~--~~~~vlV~ 186 (599)
T TIGR01991 110 -SAEILKKLKQRAEESLGGDLVGAVITVPAYFDDAQRQATKDAARLAGLNVLRLLNEPTAAAVAYGLDKA--SEGIYAVY 186 (599)
T ss_pred -HHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHHHHHcCCCceEEecCHHHHHHHHhhccC--CCCEEEEE
Confidence 999999999999999999999999999999999999999999999999999999999999999998775 67899999
Q ss_pred ecCCCceEEEEEeccc
Q psy471 141 KMLEPLLVLTLRKKKK 156 (211)
Q Consensus 141 D~GggT~Dvsv~~~~~ 156 (211)
||||||||+||+++.+
T Consensus 187 DlGgGT~DvSi~~~~~ 202 (599)
T TIGR01991 187 DLGGGTFDVSILKLTK 202 (599)
T ss_pred EcCCCeEEEEEEEEcC
Confidence 9999999999999864
No 11
>PLN03184 chloroplast Hsp70; Provisional
Probab=99.93 E-value=8.7e-26 Score=218.54 Aligned_cols=146 Identities=35% Similarity=0.497 Sum_probs=122.5
Q ss_pred ccceehhhh------HHhhhcccCcccchhhHhhhhhcCCCC---------Ccccce------------ecceeeccccC
Q psy471 4 LLTIVSLED------VKLRQNQPCQATDNNIGYLARSFEGPE---------WDYGHV------------RLRKSFSPRCC 56 (211)
Q Consensus 4 ~~~~~s~~~------~~~a~~~~~~~p~n~~~~l~r~~~g~~---------~~~~~~------------~~~k~~speel 56 (211)
+.|+++|.. ...|.++...+|.|.+..++|+++.+. +++... ..++.|+|++|
T Consensus 73 tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~speei 152 (673)
T PLN03184 73 TPSVVAYTKNGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMSEVDEESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEI 152 (673)
T ss_pred cceEEEEcCCCCEEECHHHHHhhhhCchhhhHHHHHhhCCCcchhhhhhhcCCeEEEecCCCcEEEEEecCCeEEcHHHH
Confidence 346776642 345666677789998888888885332 122221 23678999999
Q ss_pred CCchHHHHHHHHHHHHHHHhhccccceeeEccCCCccHHHHHHHHHHHHHhCCceeEEeechhHHHHHcccccCCCCCce
Q psy471 57 HHSPRLFQLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERN 136 (211)
Q Consensus 57 ~~~~~~a~iL~~L~~~a~~~~g~~~~~vVItVPa~f~~~qR~al~~Aa~~aGl~~~~lv~EP~AAAl~y~~~~~~~~~~~ 136 (211)
++++|++|+..|.++++.++..+|||||++|++.||+++++||.+||+++++||+||+|||++|++.+. .+++
T Consensus 153 -----~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa~~AGl~v~~li~EPtAAAlayg~~~~--~~~~ 225 (673)
T PLN03184 153 -----SAQVLRKLVDDASKFLNDKVTKAVITVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAASLAYGFEKK--SNET 225 (673)
T ss_pred -----HHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHHHHCCCCeEEEeCcHHHHHHHhhcccC--CCCE
Confidence 999999999999999999999999999999999999999999999999999999999999999998765 5789
Q ss_pred EEEeecCCCceEEEEEeccc
Q psy471 137 VKLPKMLEPLLVLTLRKKKK 156 (211)
Q Consensus 137 vLV~D~GggT~Dvsv~~~~~ 156 (211)
+|||||||||||+||+++.+
T Consensus 226 vlV~DlGgGT~DvSi~~~~~ 245 (673)
T PLN03184 226 ILVFDLGGGTFDVSVLEVGD 245 (673)
T ss_pred EEEEECCCCeEEEEEEEecC
Confidence 99999999999999999853
No 12
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=99.93 E-value=8.1e-26 Score=216.10 Aligned_cols=104 Identities=34% Similarity=0.417 Sum_probs=97.6
Q ss_pred ecceeeccccCCCchHHHHHHHHHHHHHHHhhccccceeeEccCCCccHHHHHHHHHHHHHhCCceeEEeechhHHHHHc
Q psy471 46 RLRKSFSPRCCHHSPRLFQLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAY 125 (211)
Q Consensus 46 ~~~k~~speel~~~~~~a~iL~~L~~~a~~~~g~~~~~vVItVPa~f~~~qR~al~~Aa~~aGl~~~~lv~EP~AAAl~y 125 (211)
..++.|+|++| ++++|++|+..|..++|.++.++|||||++|++.||+++++||.+||+++++||+||+|||++|
T Consensus 111 ~~~~~~speei-----~a~iL~~lk~~ae~~lg~~v~~aVITVPa~f~~~qR~a~~~Aa~~AGl~v~~li~EPtAAAlay 185 (595)
T PRK01433 111 FANKQLRIPEI-----AAEIFIYLKNQAEEQLKTNITKAVITVPAHFNDAARGEVMLAAKIAGFEVLRLIAEPTAAAYAY 185 (595)
T ss_pred ECCEEEcHHHH-----HHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecCcHHHHHHH
Confidence 34688999999 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCceEEEeecCCCceEEEEEeccc
Q psy471 126 GLDKNLKGERNVKLPKMLEPLLVLTLRKKKK 156 (211)
Q Consensus 126 ~~~~~~~~~~~vLV~D~GggT~Dvsv~~~~~ 156 (211)
++.+. ..+++|||||||||||+||+++.+
T Consensus 186 ~~~~~--~~~~vlV~DlGGGT~DvSi~~~~~ 214 (595)
T PRK01433 186 GLNKN--QKGCYLVYDLGGGTFDVSILNIQE 214 (595)
T ss_pred hcccC--CCCEEEEEECCCCcEEEEEEEEeC
Confidence 98764 567899999999999999999864
No 13
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=99.93 E-value=2.3e-25 Score=213.74 Aligned_cols=135 Identities=39% Similarity=0.519 Sum_probs=113.6
Q ss_pred hhhcccCcccchhhHhhhhhcCCCC---------Cccccee----------cceeeccccCCCchHHHHHHHHHHHHHHH
Q psy471 15 LRQNQPCQATDNNIGYLARSFEGPE---------WDYGHVR----------LRKSFSPRCCHHSPRLFQLLTKMKETAEA 75 (211)
Q Consensus 15 ~a~~~~~~~p~n~~~~l~r~~~g~~---------~~~~~~~----------~~k~~speel~~~~~~a~iL~~L~~~a~~ 75 (211)
.|.++...+|.+.+..++|.++.+. +++.... .+..|+|++| ++++|++|++.|..
T Consensus 69 ~A~~~~~~~p~~ti~~~KrliG~~~~d~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~ei-----~a~iL~~lk~~ae~ 143 (616)
T PRK05183 69 EARANAAQDPKNTISSVKRFMGRSLADIQQRYPHLPYQFVASENGMPLIRTAQGLKSPVEV-----SAEILKALRQRAEE 143 (616)
T ss_pred HHHHhhHhCchhhHHHHHHHhCCCchhhhhhhhcCCeEEEecCCCceEEEecCCeEcHHHH-----HHHHHHHHHHHHHH
Confidence 3444555678888777887775331 1222211 2347899999 99999999999999
Q ss_pred hhccccceeeEccCCCccHHHHHHHHHHHHHhCCceeEEeechhHHHHHcccccCCCCCceEEEeecCCCceEEEEEecc
Q psy471 76 YLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVKLPKMLEPLLVLTLRKKK 155 (211)
Q Consensus 76 ~~g~~~~~vVItVPa~f~~~qR~al~~Aa~~aGl~~~~lv~EP~AAAl~y~~~~~~~~~~~vLV~D~GggT~Dvsv~~~~ 155 (211)
++|.++..+|||||++|++.||+++++||++||+++++||+||+|||++|++.+. ..+++|||||||||||+||+++.
T Consensus 144 ~lg~~v~~~VITVPa~f~~~qR~a~~~Aa~~AGl~v~~li~EPtAAAlay~~~~~--~~~~vlV~DlGGGT~DvSv~~~~ 221 (616)
T PRK05183 144 TLGGELDGAVITVPAYFDDAQRQATKDAARLAGLNVLRLLNEPTAAAIAYGLDSG--QEGVIAVYDLGGGTFDISILRLS 221 (616)
T ss_pred HhCCCcceEEEEECCCCCHHHHHHHHHHHHHcCCCeEEEecchHHHHHHhhcccC--CCCEEEEEECCCCeEEEEEEEee
Confidence 9999999999999999999999999999999999999999999999999998765 57899999999999999999986
Q ss_pred c
Q psy471 156 K 156 (211)
Q Consensus 156 ~ 156 (211)
+
T Consensus 222 ~ 222 (616)
T PRK05183 222 K 222 (616)
T ss_pred C
Confidence 4
No 14
>CHL00094 dnaK heat shock protein 70
Probab=99.92 E-value=3.8e-25 Score=212.30 Aligned_cols=144 Identities=42% Similarity=0.564 Sum_probs=120.7
Q ss_pred cceehhhh------HHhhhcccCcccchhhHhhhhhcCCCC---------Ccccce------------ecceeeccccCC
Q psy471 5 LTIVSLED------VKLRQNQPCQATDNNIGYLARSFEGPE---------WDYGHV------------RLRKSFSPRCCH 57 (211)
Q Consensus 5 ~~~~s~~~------~~~a~~~~~~~p~n~~~~l~r~~~g~~---------~~~~~~------------~~~k~~speel~ 57 (211)
.++++|.. ...|.++...+|.|.+..++|.++.+. +++... ..++.|+|++|
T Consensus 37 PS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~~~~~~~~~~~~~v~~~~~g~i~~~~~~~~~~~s~eei- 115 (621)
T CHL00094 37 PSIVAYTKKGDLLVGQIAKRQAVINPENTFYSVKRFIGRKFSEISEEAKQVSYKVKTDSNGNIKIECPALNKDFSPEEI- 115 (621)
T ss_pred ceEEEEcCCCCEEECHHHHHhHHhCccceehhhHHhcCCChHHHHhhhhcCCeEEEECCCCCEEEEEecCCeEEcHHHH-
Confidence 35666642 234666666788888888888885442 233221 13678999999
Q ss_pred CchHHHHHHHHHHHHHHHhhccccceeeEccCCCccHHHHHHHHHHHHHhCCceeEEeechhHHHHHcccccCCCCCceE
Q psy471 58 HSPRLFQLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNV 137 (211)
Q Consensus 58 ~~~~~a~iL~~L~~~a~~~~g~~~~~vVItVPa~f~~~qR~al~~Aa~~aGl~~~~lv~EP~AAAl~y~~~~~~~~~~~v 137 (211)
++++|++|+..|+.++|.++..+|||||++|++.||+++++||++||+++++||+||+|||++|++... .+.++
T Consensus 116 ----~a~iL~~l~~~ae~~lg~~v~~~VItVPa~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAAlay~~~~~--~~~~v 189 (621)
T CHL00094 116 ----SAQVLRKLVEDASKYLGETVTQAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAASLAYGLDKK--NNETI 189 (621)
T ss_pred ----HHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHHhccccC--CCCEE
Confidence 999999999999999999999999999999999999999999999999999999999999999998765 56789
Q ss_pred EEeecCCCceEEEEEecc
Q psy471 138 KLPKMLEPLLVLTLRKKK 155 (211)
Q Consensus 138 LV~D~GggT~Dvsv~~~~ 155 (211)
|||||||||||+||+++.
T Consensus 190 lV~DlGgGT~DvSv~~~~ 207 (621)
T CHL00094 190 LVFDLGGGTFDVSILEVG 207 (621)
T ss_pred EEEEcCCCeEEEEEEEEc
Confidence 999999999999999875
No 15
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=99.91 E-value=3.5e-24 Score=203.08 Aligned_cols=102 Identities=46% Similarity=0.677 Sum_probs=93.3
Q ss_pred eeeccccCCCchHHHHHHHHHHHHHHHhhccccceeeEccCCCccHHHHHHHHHHHHHhCCceeEEeechhHHHHHcccc
Q psy471 49 KSFSPRCCHHSPRLFQLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLD 128 (211)
Q Consensus 49 k~~speel~~~~~~a~iL~~L~~~a~~~~g~~~~~vVItVPa~f~~~qR~al~~Aa~~aGl~~~~lv~EP~AAAl~y~~~ 128 (211)
+.|+|++| ++++|++|+..|..+++.++.++|||||++|+..||++++.||..||+++++||+||+|||++|++.
T Consensus 108 ~~~~~~~~-----~~~~l~~l~~~a~~~~~~~~~~~vitVPa~~~~~qr~~~~~Aa~~agl~~~~li~Ep~Aaa~~y~~~ 182 (602)
T PF00012_consen 108 KTYSPEEL-----SAMILKYLKEMAEKYLGEKVTDVVITVPAYFTDEQRQALRDAAELAGLNVLRLINEPTAAALAYGLE 182 (602)
T ss_dssp EEEEHHHH-----HHHHHHHHHHHHHHHHTSBEEEEEEEE-TT--HHHHHHHHHHHHHTT-EEEEEEEHHHHHHHHTTTT
T ss_pred eeeeeecc-----cccchhhhcccchhhcccccccceeeechhhhhhhhhcccccccccccccceeeccccccccccccc
Confidence 48999999 9999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cCCCCCceEEEeecCCCceEEEEEeccc
Q psy471 129 KNLKGERNVKLPKMLEPLLVLTLRKKKK 156 (211)
Q Consensus 129 ~~~~~~~~vLV~D~GggT~Dvsv~~~~~ 156 (211)
+.. .++++|||||||||+|+|++++..
T Consensus 183 ~~~-~~~~vlv~D~Gggt~dvs~~~~~~ 209 (602)
T PF00012_consen 183 RSD-KGKTVLVVDFGGGTFDVSVVEFSN 209 (602)
T ss_dssp SSS-SEEEEEEEEEESSEEEEEEEEEET
T ss_pred ccc-cccceeccccccceEeeeehhccc
Confidence 774 689999999999999999999864
No 16
>KOG0102|consensus
Probab=99.89 E-value=8.6e-24 Score=195.80 Aligned_cols=137 Identities=46% Similarity=0.586 Sum_probs=117.2
Q ss_pred HHhhhcccCcccchhhHhhhhhc----CCCC-----------------CcccceecceeeccccCCCchHHHHHHHHHHH
Q psy471 13 VKLRQNQPCQATDNNIGYLARSF----EGPE-----------------WDYGHVRLRKSFSPRCCHHSPRLFQLLTKMKE 71 (211)
Q Consensus 13 ~~~a~~~~~~~p~n~~~~l~r~~----~g~~-----------------~~~~~~~~~k~~speel~~~~~~a~iL~~L~~ 71 (211)
+..+.|++..+|.|.+++-+|.+ .++. |++-+...+++|+|.++ .+++|.+++.
T Consensus 76 g~~akrqav~n~~ntffatKrligRrf~d~evq~~~k~vpyKiVk~~ngdaw~e~~G~~~spsqi-----g~~vl~kmk~ 150 (640)
T KOG0102|consen 76 GMPAKRQAVTNPENTFFATKRLIGRRFDDPEVQKDIKQVPYKIVKASNGDAWVEARGKQYSPSQI-----GAFVLMKMKE 150 (640)
T ss_pred cchhhhhhccCCCceEEEehhhhhhhccCHHHHHHHHhCCcceEEccCCcEEEEeCCeEecHHHH-----HHHHHHHHHH
Confidence 34677888888888765544444 3221 12222235999999999 9999999999
Q ss_pred HHHHhhccccceeeEccCCCccHHHHHHHHHHHHHhCCceeEEeechhHHHHHcccccCCCCCceEEEeecCCCceEEEE
Q psy471 72 TAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVKLPKMLEPLLVLTL 151 (211)
Q Consensus 72 ~a~~~~g~~~~~vVItVPa~f~~~qR~al~~Aa~~aGl~~~~lv~EP~AAAl~y~~~~~~~~~~~vLV~D~GggT~Dvsv 151 (211)
+|..+++..+...|+|||+||++.||+++++|.+++|++++|++|+|+|||++|+++++ .+..++|||+||||||++|
T Consensus 151 tae~yl~~~v~~avvtvpAyfndsqRqaTkdag~iagl~vlrvineptaaalaygld~k--~~g~iaV~dLgggtfdisi 228 (640)
T KOG0102|consen 151 TAEAYLGKKVKNAVITVPAYFNDSQRQATKDAGQIAGLNVLRVINEPTAAALAYGLDKK--EDGVIAVFDLGGGTFDISI 228 (640)
T ss_pred HHHHHcCchhhheeeccHHHHhHHHHHHhHhhhhhccceeeccCCccchhHHhhccccc--CCCceEEEEcCCceeeeee
Confidence 99999999999999999999999999999999999999999999999999999999988 4899999999999999999
Q ss_pred Eeccc
Q psy471 152 RKKKK 156 (211)
Q Consensus 152 ~~~~~ 156 (211)
+.+.+
T Consensus 229 lei~~ 233 (640)
T KOG0102|consen 229 LEIED 233 (640)
T ss_pred ehhcc
Confidence 87654
No 17
>PRK11678 putative chaperone; Provisional
Probab=99.89 E-value=5.1e-23 Score=191.16 Aligned_cols=131 Identities=19% Similarity=0.160 Sum_probs=107.8
Q ss_pred HhhhcccCcccchh--hHhhhhhcCCCCCcccceecceeeccccCCCchHHHHHHHHHHHHHHHhhccccceeeEccCCC
Q psy471 14 KLRQNQPCQATDNN--IGYLARSFEGPEWDYGHVRLRKSFSPRCCHHSPRLFQLLTKMKETAEAYLGHSVRDAVITVPAY 91 (211)
Q Consensus 14 ~~a~~~~~~~p~n~--~~~l~r~~~g~~~~~~~~~~~k~~speel~~~~~~a~iL~~L~~~a~~~~g~~~~~vVItVPa~ 91 (211)
..+......+|.+. +..+||.++.+.+.. .....+++| ++++|++|++.|+.++|.++.++|||||++
T Consensus 90 ~~A~~~~~~~p~~~r~i~s~Kr~lg~~~~~~-----~~~~~~e~l-----~a~iL~~lk~~ae~~~g~~v~~~VItvPa~ 159 (450)
T PRK11678 90 LAALAQYLEDPEEVYFVKSPKSFLGASGLKP-----QQVALFEDL-----VCAMMLHIKQQAEAQLQAAITQAVIGRPVN 159 (450)
T ss_pred HHHHHhhccCCCCceEEecchhhhccCCCCc-----cceeCHHHH-----HHHHHHHHHHHHHHHhCCCCCcEEEEECCc
Confidence 33444555566665 456777776443321 233458899 999999999999999999999999999999
Q ss_pred cc-----HHHHHH---HHHHHHHhCCceeEEeechhHHHHHcccccCCCCCceEEEeecCCCceEEEEEeccc
Q psy471 92 FN-----DAQRQA---TKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVKLPKMLEPLLVLTLRKKKK 156 (211)
Q Consensus 92 f~-----~~qR~a---l~~Aa~~aGl~~~~lv~EP~AAAl~y~~~~~~~~~~~vLV~D~GggT~Dvsv~~~~~ 156 (211)
|+ ..||++ +++||..||+++++|++||+|||++|+.... .++++|||||||||+|+||+++.+
T Consensus 160 F~~~~~~~~qr~a~~~l~~Aa~~AG~~~v~li~EPtAAAl~y~~~~~--~~~~vlV~D~GGGT~D~Svv~~~~ 230 (450)
T PRK11678 160 FQGLGGEEANRQAEGILERAAKRAGFKDVEFQFEPVAAGLDFEATLT--EEKRVLVVDIGGGTTDCSMLLMGP 230 (450)
T ss_pred cccCCcchhHHHHHHHHHHHHHHcCCCEEEEEcCHHHHHHHhccccC--CCCeEEEEEeCCCeEEEEEEEecC
Confidence 98 778765 7999999999999999999999999997644 688999999999999999999865
No 18
>KOG0101|consensus
Probab=99.87 E-value=2e-22 Score=191.04 Aligned_cols=138 Identities=49% Similarity=0.688 Sum_probs=117.1
Q ss_pred HhhhcccCcccchhhHhhhhhcC----CC-------CCccccee--------------cceeeccccCCCchHHHHHHHH
Q psy471 14 KLRQNQPCQATDNNIGYLARSFE----GP-------EWDYGHVR--------------LRKSFSPRCCHHSPRLFQLLTK 68 (211)
Q Consensus 14 ~~a~~~~~~~p~n~~~~l~r~~~----g~-------~~~~~~~~--------------~~k~~speel~~~~~~a~iL~~ 68 (211)
..+..+...+|.|.++-.+|.++ ++ .|++.... ..+.|+|+++ .+++|.+
T Consensus 56 ~~a~~qv~~np~ntv~~~krliGr~f~d~~v~~~~k~~pf~V~~~~~~~~~i~~~~~~~~~~f~peei-----ss~~L~k 130 (620)
T KOG0101|consen 56 DAAKNQVARNPDNTVFDAKRLIGRFFDDPEVQSDMKLWPFKVISDQGGKPKIQVTYKGETKSFNPEEI-----SSMVLTK 130 (620)
T ss_pred hhhhhhhhcCCcceeeehhhhcCccccchhhHhHhhcCCcccccccCCcceEEecccccceeeeeeee-----eehhccc
Confidence 44555666777776544444442 22 24433331 2588999999 9999999
Q ss_pred HHHHHHHhhccccceeeEccCCCccHHHHHHHHHHHHHhCCceeEEeechhHHHHHcccccCCCCCceEEEeecCCCceE
Q psy471 69 MKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVKLPKMLEPLLV 148 (211)
Q Consensus 69 L~~~a~~~~g~~~~~vVItVPa~f~~~qR~al~~Aa~~aGl~~~~lv~EP~AAAl~y~~~~~~~~~~~vLV~D~GggT~D 148 (211)
++..|..++|..+.++|+|||++|+..||+++..|+.+||++++|+|+||+||||+|++.+......+|||+|+||||||
T Consensus 131 lke~Ae~~Lg~~v~~aviTVPa~F~~~Qr~at~~A~~iaGl~vlrii~EPtAaalAygl~k~~~~~~~VlI~DlGggtfd 210 (620)
T KOG0101|consen 131 LKETAEAYLGKTVKKAVVTVPAYFNDSQRAATKDAALIAGLNVLRIINEPTAAALAYGLDKKVLGERNVLIFDLGGGTFD 210 (620)
T ss_pred cHHHHHHHhcCceeeEEEEecCCcCHHHHHHHHHHHHhcCCceeeeecchHHHHHHhhccccccceeeEEEEEcCCCcee
Confidence 99999999999999999999999999999999999999999999999999999999999988778999999999999999
Q ss_pred EEEEeccc
Q psy471 149 LTLRKKKK 156 (211)
Q Consensus 149 vsv~~~~~ 156 (211)
+|++.+.+
T Consensus 211 vs~l~i~g 218 (620)
T KOG0101|consen 211 VSVLSLEG 218 (620)
T ss_pred eeeEEecc
Confidence 99999876
No 19
>KOG0104|consensus
Probab=99.83 E-value=9.2e-21 Score=180.64 Aligned_cols=108 Identities=33% Similarity=0.447 Sum_probs=101.2
Q ss_pred eeeccccCCCchHHHHHHHHHHHHHHHhhccccceeeEccCCCccHHHHHHHHHHHHHhCCceeEEeechhHHHHHcccc
Q psy471 49 KSFSPRCCHHSPRLFQLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLD 128 (211)
Q Consensus 49 k~~speel~~~~~~a~iL~~L~~~a~~~~g~~~~~vVItVPa~f~~~qR~al~~Aa~~aGl~~~~lv~EP~AAAl~y~~~ 128 (211)
..|++++| ++|+|.+.+..|+.+..+++..+|||||.||++++|+++.+||++||++++.|||+-+|||+.|++.
T Consensus 131 ~~ysvEel-----lAMil~~a~~~ae~~a~~~Ikd~ViTVP~~F~qaeR~all~Aa~iagl~vLqLind~~a~Al~ygv~ 205 (902)
T KOG0104|consen 131 EEYSVEEL-----LAMILQYAKSLAEEYAKQPIKDMVITVPPFFNQAERRALLQAAQIAGLNVLQLINDGTAVALNYGVF 205 (902)
T ss_pred cccCHHHH-----HHHHHHHHHHHHHHHHhcchhheEEeCCcccCHHHHHHHHHHHHhcCchhhhhhccchHHHhhhhhh
Confidence 78999999 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCC---CCCceEEEeecCCCceEEEEEeccchhhhh
Q psy471 129 KNL---KGERNVKLPKMLEPLLVLTLRKKKKKKKKK 161 (211)
Q Consensus 129 ~~~---~~~~~vLV~D~GggT~Dvsv~~~~~~~eee 161 (211)
++. ..+++++|||||+|++.++|+++.--+.++
T Consensus 206 rRk~i~~~~q~~i~YDMGs~sT~Ativsy~~v~~k~ 241 (902)
T KOG0104|consen 206 RRKEINETPQHYIFYDMGSGSTSATIVSYQLVKTKE 241 (902)
T ss_pred ccccCCCCceEEEEEecCCCceeEEEEEEEeecccc
Confidence 753 389999999999999999999987755443
No 20
>KOG0103|consensus
Probab=99.83 E-value=1.2e-20 Score=178.87 Aligned_cols=107 Identities=43% Similarity=0.582 Sum_probs=101.0
Q ss_pred cceeeccccCCCchHHHHHHHHHHHHHHHhhccccceeeEccCCCccHHHHHHHHHHHHHhCCceeEEeechhHHHHHcc
Q psy471 47 LRKSFSPRCCHHSPRLFQLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYG 126 (211)
Q Consensus 47 ~~k~~speel~~~~~~a~iL~~L~~~a~~~~g~~~~~vVItVPa~f~~~qR~al~~Aa~~aGl~~~~lv~EP~AAAl~y~ 126 (211)
..+.|+|+|| ++|+|.+|+.+|++.+..++..|||+||+||+..||+++.+||.+||++++||+++.+|+|++||
T Consensus 108 e~~~ft~~Qv-----~Am~l~klk~~ae~~l~~~v~DcvIavP~~FTd~qRravldAA~iagLn~lrLmnd~TA~Al~yg 182 (727)
T KOG0103|consen 108 EKHPFTPEQV-----LAMLLTKLKATAEKNLKSPVSDCVIAVPSYFTDSQRRAVLDAARIAGLNPLRLMNDTTATALAYG 182 (727)
T ss_pred CCCCCChHHH-----HHHHHHHHHHHHHHhcCCCCCCeeEeccccccHHHHHHHHhHHhhcCccceeeeecchHhHhhcc
Confidence 4788999999 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCC-----CCceEEEeecCCCceEEEEEeccchh
Q psy471 127 LDKNLK-----GERNVKLPKMLEPLLVLTLRKKKKKK 158 (211)
Q Consensus 127 ~~~~~~-----~~~~vLV~D~GggT~Dvsv~~~~~~~ 158 (211)
+.+..- ++++|+++|||+.++.+|++.+++-+
T Consensus 183 iyKtDLP~~~ekpr~v~fvD~GHS~~q~si~aF~kG~ 219 (727)
T KOG0103|consen 183 IYKTDLPENEEKPRNVVFVDIGHSSYQVSIAAFTKGK 219 (727)
T ss_pred cccccCCCcccCcceEEEEecccccceeeeeeeccCc
Confidence 998742 68999999999999999999988744
No 21
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=99.67 E-value=2.5e-16 Score=135.21 Aligned_cols=95 Identities=20% Similarity=0.249 Sum_probs=85.5
Q ss_pred ceeeccccCCCchHHHHHHHHHHHHHHHhhccccceeeEccCCCccHHHHHHHHHHHHHhCCceeEEeechhHHHHHccc
Q psy471 48 RKSFSPRCCHHSPRLFQLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGL 127 (211)
Q Consensus 48 ~k~~speel~~~~~~a~iL~~L~~~a~~~~g~~~~~vVItVPa~f~~~qR~al~~Aa~~aGl~~~~lv~EP~AAAl~y~~ 127 (211)
+..+.-.+. ++++|++|++.++.++|.++.++|||||++|++.||+++.+|++.+|++++.++++|.|||++|++
T Consensus 33 ~g~I~d~~~-----~~~~l~~l~~~a~~~~g~~~~~vvisVP~~~~~~~r~a~~~a~~~aGl~~~~li~ep~Aaa~~~~~ 107 (239)
T TIGR02529 33 DGIVVDFLG-----AVEIVRRLKDTLEQKLGIELTHAATAIPPGTIEGDPKVIVNVIESAGIEVLHVLDEPTAAAAVLQI 107 (239)
T ss_pred CCeEEEhHH-----HHHHHHHHHHHHHHHhCCCcCcEEEEECCCCCcccHHHHHHHHHHcCCceEEEeehHHHHHHHhcC
Confidence 344555566 899999999999988998899999999999999999999999999999999999999999999875
Q ss_pred ccCCCCCceEEEeecCCCceEEEEEec
Q psy471 128 DKNLKGERNVKLPKMLEPLLVLTLRKK 154 (211)
Q Consensus 128 ~~~~~~~~~vLV~D~GggT~Dvsv~~~ 154 (211)
. ..+|+||||||||+++++.
T Consensus 108 ~-------~~~vvDiGggtt~i~i~~~ 127 (239)
T TIGR02529 108 K-------NGAVVDVGGGTTGISILKK 127 (239)
T ss_pred C-------CcEEEEeCCCcEEEEEEEC
Confidence 3 2599999999999999864
No 22
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=99.65 E-value=7.5e-16 Score=137.94 Aligned_cols=92 Identities=20% Similarity=0.234 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHHHhhccccc--eeeEccCCCccHHHHHHHHHHHHHhCCceeEEeechhHHHHHcccccCCCCCceEEE
Q psy471 62 LFQLLTKMKETAEAYLGHSVR--DAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVKL 139 (211)
Q Consensus 62 ~a~iL~~L~~~a~~~~g~~~~--~vVItVPa~f~~~qR~al~~Aa~~aGl~~~~lv~EP~AAAl~y~~~~~~~~~~~vLV 139 (211)
++++|++++..+...++..+. .+|||||++|+..||+++.+|+..+|+++++++++|+|||++|++... .+..+||
T Consensus 77 ~~~~l~~~~~~~~~~l~~~~~~~~vvitvP~~~~~~~R~~l~~a~~~ag~~~~~li~ep~Aaa~~~g~~~~--~~~~~lv 154 (335)
T PRK13929 77 TTDLLKQIMKKAGKNIGMTFRKPNVVVCTPSGSTAVERRAISDAVKNCGAKNVHLIEEPVAAAIGADLPVD--EPVANVV 154 (335)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCHHHHHHHHHHHHHcCCCeeEeecCHHHHHHhcCCCcC--CCceEEE
Confidence 999999999998877776553 799999999999999999999999999999999999999999988654 5678999
Q ss_pred eecCCCceEEEEEecc
Q psy471 140 PKMLEPLLVLTLRKKK 155 (211)
Q Consensus 140 ~D~GggT~Dvsv~~~~ 155 (211)
+|+|+||+|+++++..
T Consensus 155 vDiG~gtt~v~vi~~~ 170 (335)
T PRK13929 155 VDIGGGTTEVAIISFG 170 (335)
T ss_pred EEeCCCeEEEEEEEeC
Confidence 9999999999999654
No 23
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=99.63 E-value=1.7e-15 Score=135.28 Aligned_cols=99 Identities=17% Similarity=0.159 Sum_probs=82.3
Q ss_pred eeccccCCCchHHHHHHHHHHHHHHHhhccccceeeEccCCCccHHHHHHHHHHHHHhCCceeEEeechhHHHHHccccc
Q psy471 50 SFSPRCCHHSPRLFQLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDK 129 (211)
Q Consensus 50 ~~speel~~~~~~a~iL~~L~~~a~~~~g~~~~~vVItVPa~f~~~qR~al~~Aa~~aGl~~~~lv~EP~AAAl~y~~~~ 129 (211)
.+...++ +..+|+++...+....+.....+|||||++|+..||+++++|++.+|++.+.++++|+|||++|++..
T Consensus 69 ~i~d~~~-----~~~~l~~~~~~~~~~~~~~~p~~vitvP~~~~~~~r~~~~~a~~~ag~~~~~li~ep~Aaa~~~g~~~ 143 (336)
T PRK13928 69 VIADYDV-----TEKMLKYFINKACGKRFFSKPRIMICIPTGITSVEKRAVREAAEQAGAKKVYLIEEPLAAAIGAGLDI 143 (336)
T ss_pred eEecHHH-----HHHHHHHHHHHHhccCCCCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCCceEecccHHHHHHHcCCcc
Confidence 4455566 78888888865542222233479999999999999999999999999999999999999999999865
Q ss_pred CCCCCceEEEeecCCCceEEEEEecc
Q psy471 130 NLKGERNVKLPKMLEPLLVLTLRKKK 155 (211)
Q Consensus 130 ~~~~~~~vLV~D~GggT~Dvsv~~~~ 155 (211)
. .+..++||||||||||+++++..
T Consensus 144 ~--~~~~~lVvDiGggttdvsvv~~g 167 (336)
T PRK13928 144 S--QPSGNMVVDIGGGTTDIAVLSLG 167 (336)
T ss_pred c--CCCeEEEEEeCCCeEEEEEEEeC
Confidence 4 56779999999999999999865
No 24
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=99.55 E-value=3.6e-14 Score=126.54 Aligned_cols=93 Identities=17% Similarity=0.179 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHHHHhhccccceeeEccCCCccHHHHHHHHHHHHHhCCceeEEeechhHHHHHcccccCCCCCceEEEee
Q psy471 62 LFQLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVKLPK 141 (211)
Q Consensus 62 ~a~iL~~L~~~a~~~~g~~~~~vVItVPa~f~~~qR~al~~Aa~~aGl~~~~lv~EP~AAAl~y~~~~~~~~~~~vLV~D 141 (211)
+..+++++........+.....+|+|||++|+..||++++.|+..+|++.+.++++|+|||++|++... .+..++|+|
T Consensus 79 ~~~~~~~~l~~~~~~~~~~~~~~vitvP~~~~~~~r~~~~~~~~~ag~~~~~li~ep~aaa~~~g~~~~--~~~~~lVvD 156 (333)
T TIGR00904 79 TEKMIKYFIKQVHSRKSFFKPRIVICVPSGITPVERRAVKESALSAGAREVYLIEEPMAAAIGAGLPVE--EPTGSMVVD 156 (333)
T ss_pred HHHHHHHHHHHHhcccccCCCcEEEEeCCCCCHHHHHHHHHHHHHcCCCeEEEecCHHHHHHhcCCccc--CCceEEEEE
Confidence 555666666554432222223799999999999999999999999999999999999999999987654 567899999
Q ss_pred cCCCceEEEEEeccc
Q psy471 142 MLEPLLVLTLRKKKK 156 (211)
Q Consensus 142 ~GggT~Dvsv~~~~~ 156 (211)
|||||||+++++..+
T Consensus 157 iG~gttdvs~v~~~~ 171 (333)
T TIGR00904 157 IGGGTTEVAVISLGG 171 (333)
T ss_pred cCCCeEEEEEEEeCC
Confidence 999999999997543
No 25
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=99.54 E-value=4.1e-14 Score=125.88 Aligned_cols=91 Identities=18% Similarity=0.215 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHHHhhccccceeeEccCCCccHHHHHHHHHHHHHhCCceeEEeechhHHHHHcccccCCCCCceEEEee
Q psy471 62 LFQLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVKLPK 141 (211)
Q Consensus 62 ~a~iL~~L~~~a~~~~g~~~~~vVItVPa~f~~~qR~al~~Aa~~aGl~~~~lv~EP~AAAl~y~~~~~~~~~~~vLV~D 141 (211)
+..+++++......... ....+|+|+|++|+..||++++.|+..+|++.+.++++|+|||++|++... ....++|+|
T Consensus 78 ~~~ll~~~~~~~~~~~~-~~~~~vi~vP~~~~~~~r~~~~~a~~~ag~~~~~li~ep~aaa~~~g~~~~--~~~~~lvvD 154 (334)
T PRK13927 78 TEKMLKYFIKKVHKNFR-PSPRVVICVPSGITEVERRAVRESALGAGAREVYLIEEPMAAAIGAGLPVT--EPTGSMVVD 154 (334)
T ss_pred HHHHHHHHHHHHhhccC-CCCcEEEEeCCCCCHHHHHHHHHHHHHcCCCeeccCCChHHHHHHcCCccc--CCCeEEEEE
Confidence 55666666655443321 224799999999999999999999999999999999999999999988654 566789999
Q ss_pred cCCCceEEEEEecc
Q psy471 142 MLEPLLVLTLRKKK 155 (211)
Q Consensus 142 ~GggT~Dvsv~~~~ 155 (211)
+||||||+++++..
T Consensus 155 iGggttdvs~v~~~ 168 (334)
T PRK13927 155 IGGGTTEVAVISLG 168 (334)
T ss_pred eCCCeEEEEEEecC
Confidence 99999999999654
No 26
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=99.50 E-value=1.5e-13 Score=122.12 Aligned_cols=92 Identities=20% Similarity=0.183 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHHHhhccccceeeEccCCCccHHHHHHHHHHHHHhCCceeEEeechhHHHHHcccccCCCCCceEEEee
Q psy471 62 LFQLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVKLPK 141 (211)
Q Consensus 62 ~a~iL~~L~~~a~~~~g~~~~~vVItVPa~f~~~qR~al~~Aa~~aGl~~~~lv~EP~AAAl~y~~~~~~~~~~~vLV~D 141 (211)
+..+++++........+.....+|+|+|++|+..+|+++..|+..+|++.+.++++|+|||++|++... ....+||+|
T Consensus 81 ~e~ll~~~~~~~~~~~~~~~~~vvit~P~~~~~~~r~~~~~~~e~~g~~~~~lv~ep~AAa~a~g~~~~--~~~~~lVvD 158 (335)
T PRK13930 81 TEAMLRYFIKKARGRRFFRKPRIVICVPSGITEVERRAVREAAEHAGAREVYLIEEPMAAAIGAGLPVT--EPVGNMVVD 158 (335)
T ss_pred HHHHHHHHHHHHhhcccCCCCcEEEEECCCCCHHHHHHHHHHHHHcCCCeEEecccHHHHHHhcCCCcC--CCCceEEEE
Confidence 777888888665544344467899999999999999999999999999999999999999999987654 455689999
Q ss_pred cCCCceEEEEEecc
Q psy471 142 MLEPLLVLTLRKKK 155 (211)
Q Consensus 142 ~GggT~Dvsv~~~~ 155 (211)
+||||||++++...
T Consensus 159 iG~gttdvs~v~~g 172 (335)
T PRK13930 159 IGGGTTEVAVISLG 172 (335)
T ss_pred eCCCeEEEEEEEeC
Confidence 99999999998743
No 27
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=99.46 E-value=2e-13 Score=122.41 Aligned_cols=102 Identities=21% Similarity=0.172 Sum_probs=78.0
Q ss_pred ceeeccccCCCchHHHHHHHHHHHHHHHhhccccceeeEccCCCccHHHHHHHHHHHHHhCCceeEEeechhHHHHHccc
Q psy471 48 RKSFSPRCCHHSPRLFQLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGL 127 (211)
Q Consensus 48 ~k~~speel~~~~~~a~iL~~L~~~a~~~~g~~~~~vVItVPa~f~~~qR~al~~Aa~~aGl~~~~lv~EP~AAAl~y~~ 127 (211)
+..+.-.++ +..+|+++.+.+.......-..++|+||+..+..+|+++.+|+..+|.+.+.|+++|.|||+..++
T Consensus 65 ~GvI~D~~~-----~~~~l~~~l~k~~~~~~~~~p~vvi~vP~~~T~verrA~~~a~~~aGa~~V~li~ep~AaAiGaGl 139 (326)
T PF06723_consen 65 DGVIADYEA-----AEEMLRYFLKKALGRRSFFRPRVVICVPSGITEVERRALIDAARQAGARKVYLIEEPIAAAIGAGL 139 (326)
T ss_dssp TTEESSHHH-----HHHHHHHHHHHHHTSS-SS--EEEEEE-SS--HHHHHHHHHHHHHTT-SEEEEEEHHHHHHHHTT-
T ss_pred CCcccCHHH-----HHHHHHHHHHHhccCCCCCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEecchHHHHhcCCC
Confidence 444444556 888999999988764333456899999999999999999999999999999999999999999998
Q ss_pred ccCCCCCceEEEeecCCCceEEEEEeccc
Q psy471 128 DKNLKGERNVKLPKMLEPLLVLTLRKKKK 156 (211)
Q Consensus 128 ~~~~~~~~~vLV~D~GggT~Dvsv~~~~~ 156 (211)
... .+...||+|+||||||++++++.+
T Consensus 140 ~i~--~~~g~miVDIG~GtTdiavislgg 166 (326)
T PF06723_consen 140 DIF--EPRGSMIVDIGGGTTDIAVISLGG 166 (326)
T ss_dssp -TT--SSS-EEEEEE-SS-EEEEEEETTE
T ss_pred CCC--CCCceEEEEECCCeEEEEEEECCC
Confidence 876 789999999999999999998754
No 28
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=99.37 E-value=3.5e-12 Score=111.17 Aligned_cols=86 Identities=26% Similarity=0.371 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHHHhhccccceeeEccCCCccHHHHHHHHHHHHHhCCceeEEeechhHHHHHcccccCCCCCceEEEee
Q psy471 62 LFQLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVKLPK 141 (211)
Q Consensus 62 ~a~iL~~L~~~a~~~~g~~~~~vVItVPa~f~~~qR~al~~Aa~~aGl~~~~lv~EP~AAAl~y~~~~~~~~~~~vLV~D 141 (211)
+...|+++++.++.++|.++..++++||++|+..+|.++.+|++.+|+++..++++|.|++.+|.+. ..+|+|
T Consensus 69 a~~~i~~~~~~ae~~~g~~i~~v~~~vp~~~~~~~~~~~~~~~~~aGl~~~~ii~e~~A~a~~~~~~-------~~~vvD 141 (267)
T PRK15080 69 AVTIVRRLKATLEEKLGRELTHAATAIPPGTSEGDPRAIINVVESAGLEVTHVLDEPTAAAAVLGID-------NGAVVD 141 (267)
T ss_pred HHHHHHHHHHHHHHHhCCCcCeEEEEeCCCCCchhHHHHHHHHHHcCCceEEEechHHHHHHHhCCC-------CcEEEE
Confidence 8889999999999998988999999999999999999999999999999999999999999988653 258999
Q ss_pred cCCCceEEEEEec
Q psy471 142 MLEPLLVLTLRKK 154 (211)
Q Consensus 142 ~GggT~Dvsv~~~ 154 (211)
||||||++++++-
T Consensus 142 IGggtt~i~v~~~ 154 (267)
T PRK15080 142 IGGGTTGISILKD 154 (267)
T ss_pred eCCCcEEEEEEEC
Confidence 9999999999863
No 29
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=99.34 E-value=2.6e-12 Score=113.97 Aligned_cols=122 Identities=18% Similarity=0.117 Sum_probs=95.3
Q ss_pred hHhhhhhcCCCCCcc---cceecceeeccccCCCchHHHHHHHHHHHHHHHhhc-cccceeeEccCCCccHHHHHHHHHH
Q psy471 28 IGYLARSFEGPEWDY---GHVRLRKSFSPRCCHHSPRLFQLLTKMKETAEAYLG-HSVRDAVITVPAYFNDAQRQATKDA 103 (211)
Q Consensus 28 ~~~l~r~~~g~~~~~---~~~~~~k~~speel~~~~~~a~iL~~L~~~a~~~~g-~~~~~vVItVPa~f~~~qR~al~~A 103 (211)
+..-.|.|.|+.... -....+..+.-.++ +..+|+++.+.+....+ .+...++++||...++..|+++++|
T Consensus 49 VG~eAK~MlGrTP~ni~aiRPmkdGVIAd~~~-----te~ml~~fik~~~~~~~~~~~prI~i~vP~g~T~VErrAi~ea 123 (342)
T COG1077 49 VGEEAKQMLGRTPGNIVAIRPMKDGVIADFEV-----TELMLKYFIKKVHKNGSSFPKPRIVICVPSGITDVERRAIKEA 123 (342)
T ss_pred ehHHHHHHhccCCCCceEEeecCCcEeecHHH-----HHHHHHHHHHHhccCCCCCCCCcEEEEecCCccHHHHHHHHHH
Confidence 344455555654321 11123444555566 88899999998875444 3445799999999999999999999
Q ss_pred HHHhCCceeEEeechhHHHHHcccccCCCCCceEEEeecCCCceEEEEEeccc
Q psy471 104 GAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVKLPKMLEPLLVLTLRKKKK 156 (211)
Q Consensus 104 a~~aGl~~~~lv~EP~AAAl~y~~~~~~~~~~~vLV~D~GggT~Dvsv~~~~~ 156 (211)
+..+|.+.+.++.||.|||+..++... .+..-||+|+||||+|++++++.+
T Consensus 124 ~~~aGa~~V~lieEp~aAAIGaglpi~--ep~G~mvvDIGgGTTevaVISlgg 174 (342)
T COG1077 124 AESAGAREVYLIEEPMAAAIGAGLPIM--EPTGSMVVDIGGGTTEVAVISLGG 174 (342)
T ss_pred HHhccCceEEEeccHHHHHhcCCCccc--CCCCCEEEEeCCCceeEEEEEecC
Confidence 999999999999999999999988876 667889999999999999988754
No 30
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=98.76 E-value=4.5e-09 Score=88.53 Aligned_cols=87 Identities=24% Similarity=0.332 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHHHhhccccceeeEccCCCccHHHHHHHHHHHHHhCCceeEEeechhHHHHHcccccCCCCCceEEEee
Q psy471 62 LFQLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVKLPK 141 (211)
Q Consensus 62 ~a~iL~~L~~~a~~~~g~~~~~vVItVPa~f~~~qR~al~~Aa~~aGl~~~~lv~EP~AAAl~y~~~~~~~~~~~vLV~D 141 (211)
+..+++++++.+++++|.++.+..-++|+.--+...++..+....||+.++.+++||+|||.-.++... .|+|
T Consensus 74 aveiVrrlkd~lEk~lGi~~tha~taiPPGt~~~~~ri~iNViESAGlevl~vlDEPTAaa~vL~l~dg-------~VVD 146 (277)
T COG4820 74 AVEIVRRLKDTLEKQLGIRFTHAATAIPPGTEQGDPRISINVIESAGLEVLHVLDEPTAAADVLQLDDG-------GVVD 146 (277)
T ss_pred HHHHHHHHHHHHHHhhCeEeeeccccCCCCccCCCceEEEEeecccCceeeeecCCchhHHHHhccCCC-------cEEE
Confidence 346899999999999999999999999998877788888899999999999999999999988877665 7899
Q ss_pred cCCCceEEEEEecc
Q psy471 142 MLEPLLVLTLRKKK 155 (211)
Q Consensus 142 ~GggT~Dvsv~~~~ 155 (211)
+||||+-+||++..
T Consensus 147 iGGGTTGIsi~kkG 160 (277)
T COG4820 147 IGGGTTGISIVKKG 160 (277)
T ss_pred eCCCcceeEEEEcC
Confidence 99999999998743
No 31
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=98.43 E-value=5.1e-07 Score=83.50 Aligned_cols=57 Identities=16% Similarity=0.117 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHhCCceeEEeechhHHHHHcccccCCCCCceEEEeecCCCceEEEEEe
Q psy471 94 DAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVKLPKMLEPLLVLTLRK 153 (211)
Q Consensus 94 ~~qR~al~~Aa~~aGl~~~~lv~EP~AAAl~y~~~~~~~~~~~vLV~D~GggT~Dvsv~~ 153 (211)
..++.. ..|++.||+++..++.+|.|+|+++..... ....++|+||||||||++|++
T Consensus 166 ~~~~~~-~~a~~~aGl~v~~iv~ep~Aaa~a~l~~~e--~~~gv~vvDiGggtTdisv~~ 222 (420)
T PRK09472 166 DMAKNI-VKAVERCGLKVDQLIFAGLASSYAVLTEDE--RELGVCVVDIGGGTMDIAVYT 222 (420)
T ss_pred HHHHHH-HHHHHHcCCeEeeEEehhhHHHHHhcChhh--hhcCeEEEEeCCCceEEEEEE
Confidence 344444 569999999999999999999998854432 567899999999999999996
No 32
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=98.41 E-value=6.4e-07 Score=81.14 Aligned_cols=59 Identities=19% Similarity=0.054 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHhCCceeEEeechhHHHHHcccccCCCCCceEEEeecCCCceEEEEEec
Q psy471 94 DAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVKLPKMLEPLLVLTLRKK 154 (211)
Q Consensus 94 ~~qR~al~~Aa~~aGl~~~~lv~EP~AAAl~y~~~~~~~~~~~vLV~D~GggT~Dvsv~~~ 154 (211)
......+.+|++.||+++..++.+|+|+|++|..... ....++|+|+|||||++++++.
T Consensus 157 ~~~v~~~~~~~~~aGl~~~~i~~~~~A~a~a~~~~~~--~~~~~~vvDiG~gtt~i~i~~~ 215 (371)
T TIGR01174 157 STILRNLVKCVERCGLEVDNIVLSGLASAIAVLTEDE--KELGVCLIDIGGGTTDIAVYTG 215 (371)
T ss_pred HHHHHHHHHHHHHcCCCeeeEEEhhhhhhhhhcCcch--hcCCEEEEEeCCCcEEEEEEEC
Confidence 4555677889999999999999999999998854332 4678999999999999999864
No 33
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton. Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.
Probab=97.94 E-value=5.7e-05 Score=68.18 Aligned_cols=84 Identities=7% Similarity=-0.000 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHHhhccccceeeEccCCCccHHHHHHHHHH-HHHhCCceeEEeechhHHHHHcccccCCCCCceEEEe
Q psy471 62 LFQLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDA-GAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVKLP 140 (211)
Q Consensus 62 ~a~iL~~L~~~a~~~~g~~~~~vVItVPa~f~~~qR~al~~A-a~~aGl~~~~lv~EP~AAAl~y~~~~~~~~~~~vLV~ 140 (211)
+..+++++....... ...-..++|++|..++..+|+.+.+. ....|++.+.++++|.+|+++++. .+.+|+
T Consensus 77 ~e~~~~~~~~~~l~~-~~~~~~vvl~~p~~~~~~~r~~~~e~lfe~~~~~~v~~~~~~~~a~~~~g~-------~~~lVV 148 (371)
T cd00012 77 MEKIWDHLFFNELKV-NPEEHPVLLTEPPLNPKSNREKTTEIMFETFNVPALYVAIQAVLSLYASGR-------TTGLVV 148 (371)
T ss_pred HHHHHHHHHHHhcCC-CCCCCceEEecCCCCCHHHHHHHHHHhhccCCCCEEEEechHHHHHHhcCC-------CeEEEE
Confidence 455555555432111 11245799999999998888877764 677899999999999999999865 578999
Q ss_pred ecCCCceEEEEEe
Q psy471 141 KMLEPLLVLTLRK 153 (211)
Q Consensus 141 D~GggT~Dvsv~~ 153 (211)
|+|+++|+++.+.
T Consensus 149 DiG~~~t~i~pv~ 161 (371)
T cd00012 149 DSGDGVTHVVPVY 161 (371)
T ss_pred ECCCCeeEEEEEE
Confidence 9999999998764
No 34
>TIGR03739 PRTRC_D PRTRC system protein D. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region.
Probab=97.86 E-value=4.1e-05 Score=68.28 Aligned_cols=74 Identities=12% Similarity=0.101 Sum_probs=57.3
Q ss_pred ccceeeEccCCCccHHHHHHHHHHHHH---------hCCceeEEeechhHHHHHcccccC--CCCCceEEEeecCCCceE
Q psy471 80 SVRDAVITVPAYFNDAQRQATKDAGAI---------AGLNVMRIVNEPTAAALAYGLDKN--LKGERNVKLPKMLEPLLV 148 (211)
Q Consensus 80 ~~~~vVItVPa~f~~~qR~al~~Aa~~---------aGl~~~~lv~EP~AAAl~y~~~~~--~~~~~~vLV~D~GggT~D 148 (211)
.+..+|+..|..+...+|..+++.... .-+..+.++++|.+|.+.+..... ......++|+|+|++|+|
T Consensus 101 ~~~~lv~GLP~~~~~~~k~~l~~~l~g~~~~~~~~~i~I~~V~V~PQ~~Ga~~~~~~~~~~~~~~~~~~lVIDIG~~TtD 180 (320)
T TIGR03739 101 EIDQLVVGLPVATLTTYKSALEKAVTGEHDIGAGKAVTVRKVLAVPQPQGALVHFVAQHGKLLTGKEQSLIIDPGYFTFD 180 (320)
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHhccceecCCceEEEEEEEEEeCCChHHHHHHHhcCCCcccCcCcEEEEecCCCeee
Confidence 355799999999988899999887643 233557789999999888765322 125567899999999999
Q ss_pred EEEEe
Q psy471 149 LTLRK 153 (211)
Q Consensus 149 vsv~~ 153 (211)
+.+++
T Consensus 181 ~~~~~ 185 (320)
T TIGR03739 181 WLVAR 185 (320)
T ss_pred eehcc
Confidence 98864
No 35
>smart00268 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily
Probab=97.85 E-value=0.00011 Score=66.17 Aligned_cols=82 Identities=9% Similarity=-0.014 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHHHhhcc--ccceeeEccCCCccHHHHHHHHHHH-HHhCCceeEEeechhHHHHHcccccCCCCCceEE
Q psy471 62 LFQLLTKMKETAEAYLGH--SVRDAVITVPAYFNDAQRQATKDAG-AIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVK 138 (211)
Q Consensus 62 ~a~iL~~L~~~a~~~~g~--~~~~vVItVPa~f~~~qR~al~~Aa-~~aGl~~~~lv~EP~AAAl~y~~~~~~~~~~~vL 138 (211)
+..+++++... .++. .-..++|+.|...+..+|+.+.+.+ ...|++.+.++++|.+|+++++ ..+.|
T Consensus 77 ~e~i~~~~~~~---~l~~~~~~~~vll~~p~~~~~~~r~~~~e~lfE~~~~~~v~~~~~~~~a~~~~g-------~~~~l 146 (373)
T smart00268 77 MEKIWDYTFFN---ELRVEPEEHPVLLTEPPMNPKSNREKILEIMFETFNFPALYIAIQAVLSLYASG-------RTTGL 146 (373)
T ss_pred HHHHHHHHHhh---hcCCCCccCeeEEecCCCCCHHHHHHHHHHhhccCCCCeEEEeccHHHHHHhCC-------CCEEE
Confidence 55666666654 2332 2357999999999999999988886 5779999999999999999986 45789
Q ss_pred EeecCCCceEEEEEe
Q psy471 139 LPKMLEPLLVLTLRK 153 (211)
Q Consensus 139 V~D~GggT~Dvsv~~ 153 (211)
|+|+|+++++++.+.
T Consensus 147 VVDiG~~~t~v~pv~ 161 (373)
T smart00268 147 VIDSGDGVTHVVPVV 161 (373)
T ss_pred EEecCCCcceEEEEE
Confidence 999999999999864
No 36
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=97.83 E-value=4.3e-05 Score=70.95 Aligned_cols=64 Identities=31% Similarity=0.251 Sum_probs=51.6
Q ss_pred eeEccCCCccHHHHHHHHHHHHHhCCceeEEeechhHHHHHcccccCCCCCceEEEeecCCCceEEEEEe
Q psy471 84 AVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVKLPKMLEPLLVLTLRK 153 (211)
Q Consensus 84 vVItVPa~f~~~qR~al~~Aa~~aGl~~~~lv~EP~AAAl~y~~~~~~~~~~~vLV~D~GggT~Dvsv~~ 153 (211)
.++++| ..--+-|.+|...+|+++..++-+|.|+|.+..-... ..-.++++||||||||+++++
T Consensus 158 hvit~~----~~~~~Nl~k~v~r~gl~v~~i~l~plAsa~a~L~~dE--kelGv~lIDiG~GTTdIai~~ 221 (418)
T COG0849 158 HVITGP----KNILENLEKCVERAGLKVDNIVLEPLASALAVLTEDE--KELGVALIDIGGGTTDIAIYK 221 (418)
T ss_pred EEEEcc----hHHHHHHHHHHHHhCCCeeeEEEehhhhhhhccCccc--HhcCeEEEEeCCCcEEEEEEE
Confidence 355555 3445567788999999999999999999976654433 677899999999999999986
No 37
>PRK13917 plasmid segregation protein ParM; Provisional
Probab=97.44 E-value=0.00058 Score=61.74 Aligned_cols=71 Identities=13% Similarity=0.070 Sum_probs=49.2
Q ss_pred eeeEccCCCccHHHH-HHHHHHHHH------------hCCceeEEeechhHHHHHcccccC------CCCCceEEEeecC
Q psy471 83 DAVITVPAYFNDAQR-QATKDAGAI------------AGLNVMRIVNEPTAAALAYGLDKN------LKGERNVKLPKML 143 (211)
Q Consensus 83 ~vVItVPa~f~~~qR-~al~~Aa~~------------aGl~~~~lv~EP~AAAl~y~~~~~------~~~~~~vLV~D~G 143 (211)
.+++..|..+...++ +.+++.... ..+..+.++++|.+|++.+.+... ......++|+|+|
T Consensus 114 ~l~tGLPv~~~~~~~~~~l~k~l~~~~~v~~~g~~~~I~i~~V~V~pQ~~ga~~~~~~~~~g~~~~~~~~~~~ilvIDIG 193 (344)
T PRK13917 114 VVATGMPSEEIGTDKVAKFEKLLNKSRLIEINGIAVTINVKGVKVVAQPMGTLLDLYLDNDGVVADKAFEEGKVSVIDFG 193 (344)
T ss_pred EEEEcCCHHHHHHHHHHHHHHHhcCceEEEECCEEEEEEEEEEEEecccHHHHHHHHhcccCcccchhcccCcEEEEEcC
Confidence 345699998755454 566655421 112346688999999988876532 1244578999999
Q ss_pred CCceEEEEEe
Q psy471 144 EPLLVLTLRK 153 (211)
Q Consensus 144 ggT~Dvsv~~ 153 (211)
+||+|+++++
T Consensus 194 ~~TtD~~v~~ 203 (344)
T PRK13917 194 SGTTDLDTIQ 203 (344)
T ss_pred CCcEEEEEEe
Confidence 9999999975
No 38
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton. These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B ....
Probab=97.09 E-value=0.0025 Score=57.62 Aligned_cols=83 Identities=13% Similarity=0.067 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHHhhccccceeeEccCCCccHHHHHHHHHHH-HHhCCceeEEeechhHHHHHcccccCCCCCceEEEe
Q psy471 62 LFQLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAG-AIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVKLP 140 (211)
Q Consensus 62 ~a~iL~~L~~~a~~~~g~~~~~vVItVPa~f~~~qR~al~~Aa-~~aGl~~~~lv~EP~AAAl~y~~~~~~~~~~~vLV~ 140 (211)
+..+++++..... .....-..++|+.|..++...|+.+.+.+ ...|++.+.+++.|.+|+++++.. +-||+
T Consensus 76 ~e~i~~~~~~~~l-~~~~~~~~vll~~~~~~~~~~r~~l~e~lfE~~~~~~v~~~~~~~~a~~~~g~~-------tglVV 147 (393)
T PF00022_consen 76 LEEIWDYIFSNLL-KVDPSDHPVLLTEPPFNPRSQREKLAEILFEKFGVPSVYFIPSPLLALYASGRT-------TGLVV 147 (393)
T ss_dssp HHHHHHHHHHTTT--SSGGGSEEEEEESTT--HHHHHHHHHHHHHTS--SEEEEEEHHHHHHHHTTBS-------SEEEE
T ss_pred ccccccccccccc-ccccccceeeeeccccCCchhhhhhhhhhhcccccceeeeeecccccccccccc-------ccccc
Confidence 4445555444321 11123457999999999998888777664 577999999999999999998765 45999
Q ss_pred ecCCCceEEEEE
Q psy471 141 KMLEPLLVLTLR 152 (211)
Q Consensus 141 D~GggT~Dvsv~ 152 (211)
|+|.+.+.++-+
T Consensus 148 D~G~~~t~v~pV 159 (393)
T PF00022_consen 148 DIGYSSTSVVPV 159 (393)
T ss_dssp EESSS-EEEEEE
T ss_pred ccceeeeeeeee
Confidence 999999988765
No 39
>PF07520 SrfB: Virulence factor SrfB; InterPro: IPR009216 This entry represents proteins of unknown function. It has been shown in Salmonella enterica that srfB is one of the genes activated by the global signal transduction/regulatory system SsrA/B []. This activation takes place within eukaryotic cells. The activated genes include pathogenicity island 2 (SPI-2) genes and at least 10 other genes (srfB is one of them) which are believed to be horizontally acquired, and to be involved in virulence/pathogenicity [].
Probab=96.64 E-value=0.0081 Score=60.91 Aligned_cols=50 Identities=16% Similarity=0.238 Sum_probs=39.1
Q ss_pred CchHHHHHHHHHHHHHHHhhccc--------------cceeeEccCCCccHHHHHHHHHHHHHh
Q psy471 58 HSPRLFQLLTKMKETAEAYLGHS--------------VRDAVITVPAYFNDAQRQATKDAGAIA 107 (211)
Q Consensus 58 ~~~~~a~iL~~L~~~a~~~~g~~--------------~~~vVItVPa~f~~~qR~al~~Aa~~a 107 (211)
+|++.+++|.-+..+|..+++++ ++++++|||+......|.++++++.-|
T Consensus 419 RSSLMtfML~EiL~QAL~QINSpa~R~r~~~~~~PR~LR~IILT~P~AMPk~Er~ifr~r~~~A 482 (1002)
T PF07520_consen 419 RSSLMTFMLSEILAQALMQINSPAQRLRRGHSDAPRRLRRIILTLPPAMPKPEREIFRRRMEEA 482 (1002)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHHHHhhcccCCCChhhhheeEECCCCCCHHHHHHHHHHHHHH
Confidence 44557888888888877666642 567999999999999999998887533
No 40
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=96.60 E-value=0.0089 Score=53.31 Aligned_cols=59 Identities=19% Similarity=0.077 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHhCCceeEEeechhHHHHHcc-----cccCCCCCc-eEEEeecCCCceEEEEEe
Q psy471 94 DAQRQATKDAGAIAGLNVMRIVNEPTAAALAYG-----LDKNLKGER-NVKLPKMLEPLLVLTLRK 153 (211)
Q Consensus 94 ~~qR~al~~Aa~~aGl~~~~lv~EP~AAAl~y~-----~~~~~~~~~-~vLV~D~GggT~Dvsv~~ 153 (211)
....+.+.++++.+|+++..+..+|.|.+-.+. +... .... +++++|+|++++++++++
T Consensus 142 ~~~v~~~~~~~~~aGl~~~~id~~~~Al~~~~~~~~~~~~~~-~~~~~~~~lvdiG~~~t~l~i~~ 206 (348)
T TIGR01175 142 KEVVDSRLHALKLAGLEPKVVDVESFALLRAWRLLGEQLASR-TYRLTDAALVDIGATSSTLNLLH 206 (348)
T ss_pred HHHHHHHHHHHHHcCCceEEEecHHHHHHHHHHHHHhhCccc-cccCceEEEEEECCCcEEEEEEE
Confidence 566778889999999999999999999876663 2212 2333 499999999999999986
No 41
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []. They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.
Probab=96.59 E-value=0.0029 Score=56.46 Aligned_cols=43 Identities=7% Similarity=0.078 Sum_probs=32.8
Q ss_pred ceeEEeechhHHHHHcccccCCCCCceEEEeecCCCceEEEEEec
Q psy471 110 NVMRIVNEPTAAALAYGLDKNLKGERNVKLPKMLEPLLVLTLRKK 154 (211)
Q Consensus 110 ~~~~lv~EP~AAAl~y~~~~~~~~~~~vLV~D~GggT~Dvsv~~~ 154 (211)
..+.++++|.||.+.+..... ....+||+|+||+|+|+++++-
T Consensus 141 ~~V~V~PQ~~~A~~~~~~~~~--~~~~~lVVDIGG~T~Dv~~v~~ 183 (318)
T PF06406_consen 141 KDVEVFPQSVGAVFDALMDLD--EDESVLVVDIGGRTTDVAVVRG 183 (318)
T ss_dssp EEEEEEESSHHHHHHHHHTS---TTSEEEEEEE-SS-EEEEEEEG
T ss_pred eeEEEEcccHHHHHHHHHhhc--ccCcEEEEEcCCCeEEeeeecC
Confidence 457789999999998766633 4467999999999999999863
No 42
>PTZ00280 Actin-related protein 3; Provisional
Probab=96.54 E-value=0.021 Score=52.61 Aligned_cols=71 Identities=14% Similarity=0.019 Sum_probs=55.7
Q ss_pred ceeeEccCCCccHHHHHHHHHHH-HHhCCceeEEeechhHHHHHcccccCCC---CCceEEEeecCCCceEEEEE
Q psy471 82 RDAVITVPAYFNDAQRQATKDAG-AIAGLNVMRIVNEPTAAALAYGLDKNLK---GERNVKLPKMLEPLLVLTLR 152 (211)
Q Consensus 82 ~~vVItVPa~f~~~qR~al~~Aa-~~aGl~~~~lv~EP~AAAl~y~~~~~~~---~~~~vLV~D~GggT~Dvsv~ 152 (211)
..++||.|..++..+|..+.+.+ ...+++.+.+++.|.+++++++...... ...+-||+|+|.+++.++-+
T Consensus 103 ~~vllte~~~~~~~~Re~l~e~lFE~~~~p~i~~~~~~~lslya~~~~~~~~~~~g~~tglVVDiG~~~T~i~PV 177 (414)
T PTZ00280 103 HYFILTEPPMNPPENREYTAEIMFETFNVKGLYIAVQAVLALRASWTSKKAKELGGTLTGTVIDSGDGVTHVIPV 177 (414)
T ss_pred CceEEeeCCCCcHHHHHHHHHHHhhccCCCeEEEecCHHHhHhhhcccccccccCCceeEEEEECCCCceEEEEE
Confidence 46899999999999898887764 5669999999999999998874432211 23456999999999999754
No 43
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional
Probab=96.43 E-value=0.0092 Score=56.23 Aligned_cols=89 Identities=12% Similarity=0.019 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHHhhcccc-----ceeeEccCCCccHHHHHHHHHHHH--------HhCCceeEEeechhHHHHHcccc
Q psy471 62 LFQLLTKMKETAEAYLGHSV-----RDAVITVPAYFNDAQRQATKDAGA--------IAGLNVMRIVNEPTAAALAYGLD 128 (211)
Q Consensus 62 ~a~iL~~L~~~a~~~~g~~~-----~~vVItVPa~f~~~qR~al~~Aa~--------~aGl~~~~lv~EP~AAAl~y~~~ 128 (211)
-+.-++.+.....+..|..+ .-.+||.+...-.+-++.+..+.. .||+++-.++. |.|++.+.. .
T Consensus 64 D~~~i~~~V~~ey~~Agi~~~die~~ahIITg~~~~~~Nl~~~v~~~~~~~gdfVVA~AG~~le~iva-~~ASg~avL-s 141 (475)
T PRK10719 64 DEAAIKELIEEEYQKAGIAPESIDSGAVIITGETARKENAREVVMALSGSAGDFVVATAGPDLESIIA-GKGAGAQTL-S 141 (475)
T ss_pred cHHHHHHHHHHHHHHcCCCHHHccccEEEEEechhHHHHHHHHHHHhcccccceeeeccCccHHHhhh-HHHhhHHHh-h
Confidence 55566666666666666443 346888886555555555554322 26666666666 888776554 2
Q ss_pred cCCCCCceEEEeecCCCceEEEEEec
Q psy471 129 KNLKGERNVKLPKMLEPLLVLTLRKK 154 (211)
Q Consensus 129 ~~~~~~~~vLV~D~GggT~Dvsv~~~ 154 (211)
. .....++++|+||||++++|++-
T Consensus 142 e--Eke~gVa~IDIGgGTT~iaVf~~ 165 (475)
T PRK10719 142 E--ERNTRVLNIDIGGGTANYALFDA 165 (475)
T ss_pred h--hccCceEEEEeCCCceEEEEEEC
Confidence 2 47788999999999999999863
No 44
>KOG0679|consensus
Probab=96.32 E-value=0.023 Score=52.25 Aligned_cols=83 Identities=10% Similarity=0.059 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHHhhccccceeeEccCCCccHHHHHHHHHH-HHHhCCceeEEeechhHHHHHcccccCCCCCceEEEe
Q psy471 62 LFQLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDA-GAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVKLP 140 (211)
Q Consensus 62 ~a~iL~~L~~~a~~~~g~~~~~vVItVPa~f~~~qR~al~~A-a~~aGl~~~~lv~EP~AAAl~y~~~~~~~~~~~vLV~ 140 (211)
+.++.++..+...+ ..-...-++||-|++-+..+|..+.+. .....++...|+..|+++|++.| +.+.||+
T Consensus 88 ~~~~w~~~~~~~Lk-~~p~ehP~litEp~wN~~~~Rek~~ElmFE~~nvPAf~L~k~~v~~AFA~G-------rstalVv 159 (426)
T KOG0679|consen 88 FEMQWRYAYKNQLK-VNPEEHPVLITEPPWNTRANREKLTELMFEKLNVPAFYLAKTAVCTAFANG-------RSTALVV 159 (426)
T ss_pred HHHHHHHHHhhhhh-cCccccceeeecCCCCcHHHHHHHHHHHHhhcCCceEEEechHHHHHHhcC-------CCceEEE
Confidence 44555555432211 122235689999999888999877766 46778888889999998888764 4567999
Q ss_pred ecCCCceEEEEE
Q psy471 141 KMLEPLLVLTLR 152 (211)
Q Consensus 141 D~GggT~Dvsv~ 152 (211)
|+|++++.++=+
T Consensus 160 DiGa~~~svsPV 171 (426)
T KOG0679|consen 160 DIGATHTSVSPV 171 (426)
T ss_pred EecCCCceeeee
Confidence 999999998854
No 45
>PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3.6.1.11 from EC and guanosine pentaphosphate phosphatase (GppA) 3.6.1.40 from EC belong to the sugar kinase/actin/hsp70 superfamily [].; PDB: 3MDQ_A 1U6Z_A 1T6D_B 2J4R_B 1T6C_A 2FLO_B 3CER_B 3HI0_A.
Probab=95.99 E-value=0.017 Score=50.46 Aligned_cols=98 Identities=17% Similarity=0.207 Sum_probs=54.3
Q ss_pred eeccccCCCchHHHHHHHHHHHHHHHhhccccceee-E-ccCCCccHHHHHHHHHHHHHhCCceeEEeechhHHHHHc-c
Q psy471 50 SFSPRCCHHSPRLFQLLTKMKETAEAYLGHSVRDAV-I-TVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAY-G 126 (211)
Q Consensus 50 ~~speel~~~~~~a~iL~~L~~~a~~~~g~~~~~vV-I-tVPa~f~~~qR~al~~Aa~~aGl~~~~lv~EP~AAAl~y-~ 126 (211)
.++++-+ .++...|+.+++.+..+ .+.++. + |--..--.++...+.+.-...|+++- +++...=|.+.| +
T Consensus 31 ~i~~e~i---~r~~~~L~~f~~~~~~~---~v~~i~~vATsA~R~A~N~~~~~~~i~~~tGi~i~-iIsgeeEa~l~~~g 103 (285)
T PF02541_consen 31 RISEEAI---ERAIDALKRFKEILKDY---GVEKIRAVATSALREAKNSDEFLDRIKKETGIDIE-IISGEEEARLSFLG 103 (285)
T ss_dssp SB-HHHH---HHHHHHHHHHHHHHHHT---TGSEEEEEEEHHHHHSTTHHHHHHHHHHHHSS-EE-EE-HHHHHHHHHHH
T ss_pred CcCHHHH---HHHHHHHHHHHHHHHHC---CCCEEEEEhhHHHHhCcCHHHHHHHHHHHhCCceE-EecHHHHHHHHHHH
Confidence 3555444 23455566666665544 344332 2 11111112333455566677898776 677666655554 3
Q ss_pred cccCCCCCceEEEeecCCCceEEEEEec
Q psy471 127 LDKNLKGERNVKLPKMLEPLLVLTLRKK 154 (211)
Q Consensus 127 ~~~~~~~~~~vLV~D~GggT~Dvsv~~~ 154 (211)
........+..+|+|+|||+|.+++++-
T Consensus 104 v~~~l~~~~~~lviDIGGGStEl~~~~~ 131 (285)
T PF02541_consen 104 VLSSLPPDKNGLVIDIGGGSTELILFEN 131 (285)
T ss_dssp HHHHSTTTSSEEEEEEESSEEEEEEEET
T ss_pred HHhhccccCCEEEEEECCCceEEEEEEC
Confidence 3222235678999999999999999854
No 46
>PTZ00004 actin-2; Provisional
Probab=95.93 E-value=0.026 Score=51.40 Aligned_cols=65 Identities=9% Similarity=-0.027 Sum_probs=53.6
Q ss_pred cceeeEccCCCccHHHHHHHHHH-HHHhCCceeEEeechhHHHHHcccccCCCCCceEEEeecCCCceEEEEE
Q psy471 81 VRDAVITVPAYFNDAQRQATKDA-GAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVKLPKMLEPLLVLTLR 152 (211)
Q Consensus 81 ~~~vVItVPa~f~~~qR~al~~A-a~~aGl~~~~lv~EP~AAAl~y~~~~~~~~~~~vLV~D~GggT~Dvsv~ 152 (211)
-..+++|-|.+++..+|+.+.+. ....|++.+.+++.|.+++++++. .+-||+|+|.+.+.++-+
T Consensus 101 ~~pvllte~~~~~~~~r~~~~e~lFE~~~~~~~~~~~~~~ls~ya~g~-------~tglVVDiG~~~t~v~pV 166 (378)
T PTZ00004 101 EHPVLLTEAPLNPKANREKMTQIMFETHNVPAMYVAIQAVLSLYASGR-------TTGIVLDSGDGVSHTVPI 166 (378)
T ss_pred cCcceeecCCCCcHHHHHHHHHHHHhhcCCceEEeeccHHHHHHhcCC-------ceEEEEECCCCcEEEEEE
Confidence 35688999999999988876665 567899999999999999988753 456999999999988764
No 47
>PRK10854 exopolyphosphatase; Provisional
Probab=95.73 E-value=0.044 Score=52.20 Aligned_cols=98 Identities=14% Similarity=0.104 Sum_probs=58.9
Q ss_pred eeccccCCCchHHHHHHHHHHHHHHHhhccccce--eeEccCCCccHHHHHHHHHHHHHhCCceeEEeechhHHHHHc-c
Q psy471 50 SFSPRCCHHSPRLFQLLTKMKETAEAYLGHSVRD--AVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAY-G 126 (211)
Q Consensus 50 ~~speel~~~~~~a~iL~~L~~~a~~~~g~~~~~--vVItVPa~f~~~qR~al~~Aa~~aGl~~~~lv~EP~AAAl~y-~ 126 (211)
.++++-+ .++-..|+.+++.+..+ .+.. +|=|--..=-.++..++.++-..+|+++- +|+-..=|-+.| |
T Consensus 56 ~Ls~e~~---~r~~~~L~~F~~~~~~~---~v~~v~~vATsAlReA~N~~~fl~~i~~~tGl~i~-vIsG~EEA~l~~~g 128 (513)
T PRK10854 56 MLSEEAM---ERGLNCLSLFAERLQGF---SPANVCIVGTHTLRQALNATDFLKRAEKVIPYPIE-IISGNEEARLIFMG 128 (513)
T ss_pred CcCHHHH---HHHHHHHHHHHHHHHhC---CCCeEEEEehHHHHcCcCHHHHHHHHHHHHCCCeE-EeCHHHHHHHHHhh
Confidence 4555555 33555666666666544 3332 22222211122344456666677898775 777776666665 4
Q ss_pred cccCCCCCceEEEeecCCCceEEEEEec
Q psy471 127 LDKNLKGERNVKLPKMLEPLLVLTLRKK 154 (211)
Q Consensus 127 ~~~~~~~~~~vLV~D~GggT~Dvsv~~~ 154 (211)
........+..+|+|+|||++.+++++-
T Consensus 129 v~~~l~~~~~~lvvDIGGGStEl~~~~~ 156 (513)
T PRK10854 129 VEHTQPEKGRKLVIDIGGGSTELVIGEN 156 (513)
T ss_pred hhcccCCCCCeEEEEeCCCeEEEEEecC
Confidence 4444333467899999999999999863
No 48
>PTZ00452 actin; Provisional
Probab=95.61 E-value=0.081 Score=48.34 Aligned_cols=65 Identities=11% Similarity=-0.062 Sum_probs=53.5
Q ss_pred cceeeEccCCCccHHHHHHHHHH-HHHhCCceeEEeechhHHHHHcccccCCCCCceEEEeecCCCceEEEEE
Q psy471 81 VRDAVITVPAYFNDAQRQATKDA-GAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVKLPKMLEPLLVLTLR 152 (211)
Q Consensus 81 ~~~vVItVPa~f~~~qR~al~~A-a~~aGl~~~~lv~EP~AAAl~y~~~~~~~~~~~vLV~D~GggT~Dvsv~ 152 (211)
-..+++|-|+..+..+|..+.+. .+..+++.+.+.+.|.+++++++. .+-||+|+|.+.+.++-+
T Consensus 100 ~~pvlitE~~~~~~~~Re~l~eilFE~~~vp~~~~~~~~~lslya~g~-------~tglVVDiG~~~t~v~PV 165 (375)
T PTZ00452 100 DQPVFMTDAPMNSKFNRERMTQIMFETFNTPCLYISNEAVLSLYTSGK-------TIGLVVDSGEGVTHCVPV 165 (375)
T ss_pred cCceeeecCCCCCHHHHHHHHHHHhhccCCceEEEechHHHHHHHCCC-------ceeeeecCCCCcceEEEE
Confidence 35789999999999999888766 466788899999999999988753 356999999999988654
No 49
>PTZ00281 actin; Provisional
Probab=95.54 E-value=0.092 Score=47.86 Aligned_cols=63 Identities=10% Similarity=-0.028 Sum_probs=53.1
Q ss_pred cceeeEccCCCccHHHHHHHHHH-HHHhCCceeEEeechhHHHHHcccccCCCCCceEEEeecCCCceEEE
Q psy471 81 VRDAVITVPAYFNDAQRQATKDA-GAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVKLPKMLEPLLVLT 150 (211)
Q Consensus 81 ~~~vVItVPa~f~~~qR~al~~A-a~~aGl~~~~lv~EP~AAAl~y~~~~~~~~~~~vLV~D~GggT~Dvs 150 (211)
-..++||-|.+++..+|..+.+. ....++..+.+++.|.+++++++. .+-||+|+|.+.+.++
T Consensus 101 ~~pvllte~~~~~~~~re~l~e~lFE~~~vp~~~~~~~~~ls~ya~g~-------~tglVVDiG~~~t~v~ 164 (376)
T PTZ00281 101 EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR-------TTGIVMDSGDGVSHTV 164 (376)
T ss_pred cCeEEEecCCCCcHHHHHHHHHHHhcccCCceeEeeccHHHHHHhcCC-------ceEEEEECCCceEEEE
Confidence 35788999999999999888774 577899999999999999988753 3669999999999876
No 50
>PTZ00466 actin-like protein; Provisional
Probab=95.49 E-value=0.089 Score=48.18 Aligned_cols=80 Identities=5% Similarity=-0.024 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHHhhcc--ccceeeEccCCCccHHHHHHHHHH-HHHhCCceeEEeechhHHHHHcccccCCCCCceEE
Q psy471 62 LFQLLTKMKETAEAYLGH--SVRDAVITVPAYFNDAQRQATKDA-GAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVK 138 (211)
Q Consensus 62 ~a~iL~~L~~~a~~~~g~--~~~~vVItVPa~f~~~qR~al~~A-a~~aGl~~~~lv~EP~AAAl~y~~~~~~~~~~~vL 138 (211)
...++.++.. .++. .-..+++|-|++++..+|..+.+. ....+++.+.+.+.|.+|+++++. .+-+
T Consensus 89 ~e~iw~~~f~----~l~v~~~~~pvllte~~~~~~~~re~~~e~lFE~~~~p~~~~~~~~~lsl~a~g~-------~tgl 157 (380)
T PTZ00466 89 MENIWIHVYN----SMKINSEEHPVLLTEAPLNPQKNKEKIAEVFFETFNVPALFISIQAILSLYSCGK-------TNGT 157 (380)
T ss_pred HHHHHHHHHh----hcccCCccCeEEEecCccccHHHHHHHHHHHhccCCCCeEEEecchHHHHHhcCC-------ceEE
Confidence 4455555542 2332 235688899999999999887665 567788999999999999988753 4679
Q ss_pred EeecCCCceEEEEE
Q psy471 139 LPKMLEPLLVLTLR 152 (211)
Q Consensus 139 V~D~GggT~Dvsv~ 152 (211)
|+|+|.+.+.++-+
T Consensus 158 VVD~G~~~t~v~PV 171 (380)
T PTZ00466 158 VLDCGDGVCHCVSI 171 (380)
T ss_pred EEeCCCCceEEEEE
Confidence 99999999988543
No 51
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=95.25 E-value=0.078 Score=50.32 Aligned_cols=58 Identities=17% Similarity=0.180 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHhCCceeEEeechhHHHHHc-ccccCCCCCceEEEeecCCCceEEEEEe
Q psy471 95 AQRQATKDAGAIAGLNVMRIVNEPTAAALAY-GLDKNLKGERNVKLPKMLEPLLVLTLRK 153 (211)
Q Consensus 95 ~qR~al~~Aa~~aGl~~~~lv~EP~AAAl~y-~~~~~~~~~~~vLV~D~GggT~Dvsv~~ 153 (211)
++..++.++-..+|+++- +|+-..=|-+.| |...........+|+|+|||++.+++++
T Consensus 92 N~~~fl~~i~~~tGl~ie-vIsG~eEA~l~~~gv~~~l~~~~~~lviDIGGGStEl~~~~ 150 (496)
T PRK11031 92 NADEFLAKAQEILGCPVQ-VISGEEEARLIYQGVAHTTGGADQRLVVDIGGASTELVTGT 150 (496)
T ss_pred CHHHHHHHHHHHHCCCeE-EeCHHHHHHHHHHhhhhccCCCCCEEEEEecCCeeeEEEec
Confidence 444566667777898776 777666666665 4444333344689999999999999875
No 52
>COG4457 SrfB Uncharacterized protein conserved in bacteria, putative virulence factor [Function unknown]
Probab=95.05 E-value=0.13 Score=50.47 Aligned_cols=54 Identities=20% Similarity=0.417 Sum_probs=39.5
Q ss_pred eccccCCCchHHHHHHHHHHHHHHHhhccc--------------cceeeEccCCCccHHHHHHHHHHHH
Q psy471 51 FSPRCCHHSPRLFQLLTKMKETAEAYLGHS--------------VRDAVITVPAYFNDAQRQATKDAGA 105 (211)
Q Consensus 51 ~speel~~~~~~a~iL~~L~~~a~~~~g~~--------------~~~vVItVPa~f~~~qR~al~~Aa~ 105 (211)
|+| ..-+|++.+++|..+..+|-.+++.+ .+++++|+|+...-..|..+++.+.
T Consensus 420 fsp-~ySRSslmTfML~EilaqAl~qiNsp~tR~kl~~~~aPR~LRsiILTlPsAmPk~EreIfr~r~~ 487 (1014)
T COG4457 420 FSP-CYSRSSLMTFMLSEILAQALSQINSPATRLKLRHKDAPRQLRSIILTLPSAMPKQEREIFRQRME 487 (1014)
T ss_pred ccc-cccHHHHHHHHHHHHHHHHHHhhcCHHHhhhhccCCchHhhhhheeeCCccCCchHHHHHHHHHH
Confidence 443 33456668888888888877666532 4678999999999988888877653
No 53
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=95.04 E-value=0.1 Score=51.42 Aligned_cols=87 Identities=21% Similarity=0.138 Sum_probs=54.5
Q ss_pred CCchHHHHHHHHHHHHHHHhhccccceeeEccCCCccHHHHHHHHHHHHHhCCceeEEeechhHHHHHcccccCCCCCce
Q psy471 57 HHSPRLFQLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERN 136 (211)
Q Consensus 57 ~~~~~~a~iL~~L~~~a~~~~g~~~~~vVItVPa~f~~~qR~al~~Aa~~aGl~~~~lv~EP~AAAl~y~~~~~~~~~~~ 136 (211)
.-+|++..+|+.++...+.. |.+..-.++-. ---|..+-...+.++..|.+-|.|-.+...+.-....+ +
T Consensus 210 ~L~pi~~~yl~~v~~~l~~~-g~~~~l~~m~s--------dGgl~~~~~a~~~pv~tI~SGPAagvvGAa~ltg~~~g-~ 279 (674)
T COG0145 210 YLSPILRRYLEAVKDALKER-GIKARLMVMQS--------DGGLVSAEEAREKPVETILSGPAAGVVGAAYLTGLKAG-N 279 (674)
T ss_pred eehHHHHHHHHHHHHHHHhc-CCCceeEEEec--------CCccccHHHHhcCCeeeEeeccHHHHHHHHHhcccccC-C
Confidence 33555777887777754422 22211111111 11223455566778888999999988776655222233 6
Q ss_pred EEEeecCCCceEEEEEe
Q psy471 137 VKLPKMLEPLLVLTLRK 153 (211)
Q Consensus 137 vLV~D~GggT~Dvsv~~ 153 (211)
++++||||.|||++++.
T Consensus 280 ~i~~DmGGTStDva~i~ 296 (674)
T COG0145 280 AIVFDMGGTSTDVALII 296 (674)
T ss_pred EEEEEcCCcceeeeeee
Confidence 99999999999999986
No 54
>PF08841 DDR: Diol dehydratase reactivase ATPase-like domain; InterPro: IPR009191 Diol dehydratase (propanediol dehydratase) and glycerol dehydratase undergo concomitant, irreversible inactivation by glycerol during catalysis [, ]. This inactivation is mechanism-based and involves cleavage of the Co-C bond of the cobalamin cofactor, coenzyme B12 (AdoCbl), forming 5 -deoxyadenosine and a modified coenzyme []. Irreversible inactivation of the enzyme results from tight binding to the modified, inactive cobalamin [, ]. The glycerol-inactivated enzyme undergoes rapid reactivation in the presence of free AdoCbl, ATP, and Mg 2+ (or Mn 2+ ) []. Reactivation is mediated by a complex of two proteins: a large subunit (DdrA/PduG) and a small subunit (DdrB/PduH, IPR009192 from INTERPRO) [, ]. The two subunits of the reactivating factor for glycerol dehydratase have been shown to form a tight complex that serves to reactivate the glycerol-inactivated holoenzyme, as well as O2-inactivated holoenzyme in vitro []. It is believed that this reactivating factor replaces an enzyme-bound, adenine-lacking inactive cobalamin with a free, adenine-containing active cobalamin []. PduG and PduH, part of the propanediol utilization pdu operon, are believed to have a similar function in the reactivation of propanediol dehydratase. PduG was also proposed, on the basis of genetic tests, to be a cobalamin adenosyltransferase involved in the conversion of inactive cobalamin (B12) to AdoCbl []. However, this function has since been shown to belong to another protein, PduO (IPR009221 from INTERPRO, IPR012228 from INTERPRO) []. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO for more details on the propanediol utilization pathway and pdu operon, as well as on the glycerol breakdown pathway.; PDB: 1NBW_C 2D0P_C 2D0O_C.
Probab=94.89 E-value=0.078 Score=47.19 Aligned_cols=60 Identities=15% Similarity=-0.003 Sum_probs=39.8
Q ss_pred HHHHHHHHH-HHHhCCceeEEeechhHHHHHcccccCCCCCceEEEeecCCCceEEEEEeccc
Q psy471 95 AQRQATKDA-GAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVKLPKMLEPLLVLTLRKKKK 156 (211)
Q Consensus 95 ~qR~al~~A-a~~aGl~~~~lv~EP~AAAl~y~~~~~~~~~~~vLV~D~GggT~Dvsv~~~~~ 156 (211)
.|-+.+.+. ....|.++..-=-|+.+|++...-... .+..+.|+||||||+|.|++.-++
T Consensus 95 l~M~~iA~~l~~~lgv~V~igGvEAemAi~GALTTPG--t~~PlaIlDmG~GSTDAsii~~~g 155 (332)
T PF08841_consen 95 LQMQMIADELEEELGVPVEIGGVEAEMAILGALTTPG--TDKPLAILDMGGGSTDASIINRDG 155 (332)
T ss_dssp -TCHHHHHHHHHHHTSEEEEECEHHHHHHHHHTTSTT----SSEEEEEE-SSEEEEEEE-TTS
T ss_pred ccHHHHHHHHHHHHCCceEEccccHHHHHhcccCCCC--CCCCeEEEecCCCcccHHHhCCCC
Confidence 444444333 346688887777788888876644443 778899999999999999997554
No 55
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=94.80 E-value=0.15 Score=45.13 Aligned_cols=98 Identities=19% Similarity=0.175 Sum_probs=55.7
Q ss_pred eeccccCCCchHHHHHHHHHHHHHHHhhccccceeeEccCCCccHHHHHHHHHHHHHhCCceeEEeechhHHHHHcc-cc
Q psy471 50 SFSPRCCHHSPRLFQLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYG-LD 128 (211)
Q Consensus 50 ~~speel~~~~~~a~iL~~L~~~a~~~~g~~~~~vVItVPa~f~~~qR~al~~Aa~~aGl~~~~lv~EP~AAAl~y~-~~ 128 (211)
.++++-+ .++...|+.+++.+..+ +..--.++-|--..--.++...+...-..+|+++ ++++...-|.+.|. ..
T Consensus 45 ~i~~e~i---~~~~~~l~~f~~~~~~~-~v~~i~~vaTsa~R~A~N~~~~~~~i~~~tgi~i-~visg~eEa~l~~~gv~ 119 (300)
T TIGR03706 45 RLSEEAI---ERALEALKRFAELLRGF-PVDEVRAVATAALRDAKNGPEFLREAEAILGLPI-EVISGEEEARLIYLGVA 119 (300)
T ss_pred CcCHHHH---HHHHHHHHHHHHHHHhC-CCCeEEEEEcHHHHcCCCHHHHHHHHHHHHCCCe-EEeChHHHHHHHHHHHH
Confidence 3555544 22445666666666543 2221123333222222233344445556789876 48888888877763 33
Q ss_pred cCCCCCceEEEeecCCCceEEEEEe
Q psy471 129 KNLKGERNVKLPKMLEPLLVLTLRK 153 (211)
Q Consensus 129 ~~~~~~~~vLV~D~GggT~Dvsv~~ 153 (211)
..... ...+++|+|||++.++++.
T Consensus 120 ~~~~~-~~~~v~DiGGGSte~~~~~ 143 (300)
T TIGR03706 120 HTLPI-ADGLVVDIGGGSTELILGK 143 (300)
T ss_pred hCCCC-CCcEEEEecCCeEEEEEec
Confidence 33222 2359999999999999875
No 56
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]
Probab=94.64 E-value=0.17 Score=48.27 Aligned_cols=90 Identities=14% Similarity=0.096 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHhhccccceeeE--ccCCCccHHHHHHHHHHHHHhCCceeEEeech-hHHHHHcccccCCCCCceEEE
Q psy471 63 FQLLTKMKETAEAYLGHSVRDAVI--TVPAYFNDAQRQATKDAGAIAGLNVMRIVNEP-TAAALAYGLDKNLKGERNVKL 139 (211)
Q Consensus 63 a~iL~~L~~~a~~~~g~~~~~vVI--tVPa~f~~~qR~al~~Aa~~aGl~~~~lv~EP-~AAAl~y~~~~~~~~~~~vLV 139 (211)
...+..|+..++...+.++..+.+ |--..--.+.-.++..+.+..|+++- +|+-- .|-...+|.....+.....+|
T Consensus 55 ~R~~~aL~~f~e~~~~~~~~~v~~vATsA~R~A~N~~eFl~rv~~~~G~~ie-vIsGeeEArl~~lGv~~~~~~~~~~lv 133 (492)
T COG0248 55 ERALSALKRFAELLDGFGAEEVRVVATSALRDAPNGDEFLARVEKELGLPIE-VISGEEEARLIYLGVASTLPRKGDGLV 133 (492)
T ss_pred HHHHHHHHHHHHHHhhCCCCEEEEehhHHHHcCCCHHHHHHHHHHHhCCceE-EeccHHHHHHHHHHHHhcCCCCCCEEE
Confidence 444445555544444445555322 11111123445578888888998776 55544 443444455444334788999
Q ss_pred eecCCCceEEEEEe
Q psy471 140 PKMLEPLLVLTLRK 153 (211)
Q Consensus 140 ~D~GggT~Dvsv~~ 153 (211)
+|+|||+|.+++..
T Consensus 134 ~DIGGGStEl~~g~ 147 (492)
T COG0248 134 IDIGGGSTELVLGD 147 (492)
T ss_pred EEecCCeEEEEEec
Confidence 99999999999875
No 57
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=94.30 E-value=0.031 Score=49.37 Aligned_cols=43 Identities=23% Similarity=0.227 Sum_probs=28.2
Q ss_pred CceeEEeechhHHHHHcccccCCCCCceEEEeecCCCceEEEEEe
Q psy471 109 LNVMRIVNEPTAAALAYGLDKNLKGERNVKLPKMLEPLLVLTLRK 153 (211)
Q Consensus 109 l~~~~lv~EP~AAAl~y~~~~~~~~~~~vLV~D~GggT~Dvsv~~ 153 (211)
.++..+.+-|.|.++.... .....++++++||||.|||++++.
T Consensus 53 ~Pv~ti~SGPaas~~ga~~--~~~g~~~~i~vDmGGTTtDi~~i~ 95 (290)
T PF01968_consen 53 RPVETILSGPAASVIGAAA--RLTGLENAIVVDMGGTTTDIALIK 95 (290)
T ss_dssp SGGCTB--SSHHHHHHHHH----HT-SSEEEEEE-SS-EEEEEEE
T ss_pred hHHHHhhcCHHHhHhhhhh--hcCCCCCEEEEeCCCCEEEEEEEE
Confidence 3556677888887766555 222567899999999999999996
No 58
>KOG0797|consensus
Probab=93.89 E-value=0.28 Score=46.83 Aligned_cols=65 Identities=18% Similarity=0.167 Sum_probs=53.1
Q ss_pred ceeeEccCCCccHHHHH-HHHHHHHHhCCceeEEeechhHHHHHcccccCCCCCceEEEeecCCCceEEEEEe
Q psy471 82 RDAVITVPAYFNDAQRQ-ATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVKLPKMLEPLLVLTLRK 153 (211)
Q Consensus 82 ~~vVItVPa~f~~~qR~-al~~Aa~~aGl~~~~lv~EP~AAAl~y~~~~~~~~~~~vLV~D~GggT~Dvsv~~ 153 (211)
-++|+-||-.|....-+ .+.-..-..||+.+.++.|..||.++.|+. .-.|+|+|+-+|.++.+.
T Consensus 228 y~aVlVVpD~f~r~hveefl~ilL~eL~F~~~~v~QESlaatfGaGls-------s~CVVdiGAQkTsIaCVE 293 (618)
T KOG0797|consen 228 YHAVLVVPDTFDRRHVEEFLTILLGELGFNSAVVHQESLAATFGAGLS-------SACVVDIGAQKTSIACVE 293 (618)
T ss_pred eeEEEEecchhhHHHHHHHHHHHHHHhccceEEEEhhhhHHHhcCCcc-------ceeEEEccCcceeEEEee
Confidence 46899999999875544 555556678999999999999999888775 359999999999988763
No 59
>PLN02666 5-oxoprolinase
Probab=90.05 E-value=0.25 Score=52.04 Aligned_cols=41 Identities=17% Similarity=0.148 Sum_probs=30.9
Q ss_pred eEEeechhHHHHHccccc-CCCCCceEEEeecCCCceEEEEE
Q psy471 112 MRIVNEPTAAALAYGLDK-NLKGERNVKLPKMLEPLLVLTLR 152 (211)
Q Consensus 112 ~~lv~EP~AAAl~y~~~~-~~~~~~~vLV~D~GggT~Dvsv~ 152 (211)
..+.+-|.|.++.+...- .....++++++||||.|||++++
T Consensus 290 ~ti~SGPAagv~Gaa~l~~~~~g~~~~I~~DmGGTTtDv~li 331 (1275)
T PLN02666 290 KAILSGPAGGVVGYAQTTFGLETEKPVIGFDMGGTSTDVSRY 331 (1275)
T ss_pred CeEEECHHHHHHHHHHHhccccCCCCEEEEecCCceeeeEEE
Confidence 348888988887754432 22234689999999999999998
No 60
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=88.52 E-value=1.2 Score=39.80 Aligned_cols=60 Identities=15% Similarity=0.090 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHhCCceeEEeechhHHHHHccccc-CC---CCCceEEEeecCCCceEEEEEe
Q psy471 94 DAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDK-NL---KGERNVKLPKMLEPLLVLTLRK 153 (211)
Q Consensus 94 ~~qR~al~~Aa~~aGl~~~~lv~EP~AAAl~y~~~~-~~---~~~~~vLV~D~GggT~Dvsv~~ 153 (211)
...-..+.++++.+|+++..+=-+|.|.+-.|.... .. .....++++|+|+.++.++++.
T Consensus 135 k~~v~~~~~~~~~aGL~~~~vDv~~~Al~r~~~~~~~~~~~~~~~~~~~lvdiG~~~t~~~i~~ 198 (340)
T PF11104_consen 135 KEIVESYVELFEEAGLKPVAVDVEAFALARLFEFLEPQLPDEEDAETVALVDIGASSTTVIIFQ 198 (340)
T ss_dssp HHHHHHHHHHHHHTT-EEEEEEEHHHHGGGGGHHHHHTST----T-EEEEEEE-SS-EEEEEEE
T ss_pred HHHHHHHHHHHHHcCCceEEEeehHHHHHHHHHHHHHhCCcccccceEEEEEecCCeEEEEEEE
Confidence 455667788899999999866555555544443321 11 2456799999999999999875
No 61
>COG5277 Actin and related proteins [Cytoskeleton]
Probab=87.77 E-value=3.1 Score=39.20 Aligned_cols=85 Identities=8% Similarity=-0.019 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHHhhcc--ccceeeEccCCCccHHHHHHHHHH-HHHhCCceeEEeechhHHHHHcccccCCCCCceEE
Q psy471 62 LFQLLTKMKETAEAYLGH--SVRDAVITVPAYFNDAQRQATKDA-GAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVK 138 (211)
Q Consensus 62 ~a~iL~~L~~~a~~~~g~--~~~~vVItVPa~f~~~qR~al~~A-a~~aGl~~~~lv~EP~AAAl~y~~~~~~~~~~~vL 138 (211)
..++.+++.... ..+.. .-..+++|-|..++..+|..+.+. .....+..+.+...+.+++++.+... .+.+
T Consensus 86 ~e~~w~~~~~~~-~~~~~~~~~~pllltep~~n~~~~re~~~e~~fE~~~vp~~~~~~~~~l~~ya~g~~~-----~~g~ 159 (444)
T COG5277 86 MEQIWDYTFFNK-GDLLPSPEEHPLLLTEPPLNPPSNREKITELLFETLNVPALYLAIQAVLSLYASGSSD-----ETGL 159 (444)
T ss_pred HHHHHHHhhcch-hhccCCCcCCceEEeccCCCcHHHHHHHHHHHHHhcCCcceEeeHHHHHHHHhcCCCC-----CceE
Confidence 445555555443 12221 234699999999999888866655 56667777777777777776655431 4789
Q ss_pred EeecCCCceEEEEE
Q psy471 139 LPKMLEPLLVLTLR 152 (211)
Q Consensus 139 V~D~GggT~Dvsv~ 152 (211)
|+|+|.+.|+++=+
T Consensus 160 ViD~G~~~t~v~PV 173 (444)
T COG5277 160 VIDSGDSVTHVIPV 173 (444)
T ss_pred EEEcCCCceeeEee
Confidence 99999999998754
No 62
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=84.15 E-value=0.79 Score=41.37 Aligned_cols=20 Identities=5% Similarity=-0.230 Sum_probs=17.9
Q ss_pred CceEEEeecCCCceEEEEEe
Q psy471 134 ERNVKLPKMLEPLLVLTLRK 153 (211)
Q Consensus 134 ~~~vLV~D~GggT~Dvsv~~ 153 (211)
..+++++||||.|+|+++++
T Consensus 127 ~~~~I~~DmGGTTtDi~~i~ 146 (318)
T TIGR03123 127 IPECLFVDMGSTTTDIIPII 146 (318)
T ss_pred CCCEEEEEcCccceeeEEec
Confidence 45699999999999999986
No 63
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase). This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.
Probab=82.69 E-value=4 Score=35.72 Aligned_cols=71 Identities=24% Similarity=0.183 Sum_probs=43.6
Q ss_pred ccceeeEccCCCccHHH------------HHHHHHH-HHHhCCceeEEeechhHHHHHcccccCCCCCceEEEeecCCCc
Q psy471 80 SVRDAVITVPAYFNDAQ------------RQATKDA-GAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVKLPKMLEPL 146 (211)
Q Consensus 80 ~~~~vVItVPa~f~~~q------------R~al~~A-a~~aGl~~~~lv~EP~AAAl~y~~~~~~~~~~~vLV~D~GggT 146 (211)
++..+.|++|..++... ...+.+. .+..|++ +.+.|+..|+|++-.+.......++++++.+|.|-
T Consensus 57 ~i~gIgva~pG~vd~~~g~~~~~~~~~w~~~~l~~~l~~~~~~p-v~v~NDa~~~alaE~~~g~~~~~~~~~~v~igtGi 135 (318)
T TIGR00744 57 EIVAIGIGAPGPVNRQRGTVYFAVNLDWKQEPLKEKVEARVGLP-VVVENDANAAALGEYKKGAGKGARDVICITLGTGL 135 (318)
T ss_pred ceEEEEEeccccccCCCCEEEecCCCCCCCCCHHHHHHHHHCCC-EEEechHHHHHHHHHHhcccCCCCcEEEEEeCCcc
Confidence 46678888887664321 1112222 2345776 44999999999876554333345778888888765
Q ss_pred eEEEEE
Q psy471 147 LVLTLR 152 (211)
Q Consensus 147 ~Dvsv~ 152 (211)
-.+++
T Consensus 136 -G~giv 140 (318)
T TIGR00744 136 -GGGII 140 (318)
T ss_pred -EEEEE
Confidence 44443
No 64
>COG2069 CdhD CO dehydrogenase/acetyl-CoA synthase delta subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=82.65 E-value=2.4 Score=38.22 Aligned_cols=79 Identities=22% Similarity=0.219 Sum_probs=47.2
Q ss_pred HHHHHHHHHHhhccccceeeEccCCCccHHHHHHHHHHHHHhCCceeEEeechhHHHHHcccccCCC----------CCc
Q psy471 66 LTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLK----------GER 135 (211)
Q Consensus 66 L~~L~~~a~~~~g~~~~~vVItVPa~f~~~qR~al~~Aa~~aGl~~~~lv~EP~AAAl~y~~~~~~~----------~~~ 135 (211)
++++...|.++ .++|+|--..=-..||..=+... ..|++.-+||-+||.|||.||+.-... ++.
T Consensus 240 y~~ia~AA~ky-----~H~VLswt~~D~N~qk~LNrkll-k~gl~r~~IVMDPTTcALGYGieyai~~m~RiRlaaLkGD 313 (403)
T COG2069 240 YERIAEAALKY-----DHVVLSWTQMDVNMQKTLNRKLL-KRGLPRDRIVMDPTTCALGYGIEYAITNMERIRLAALKGD 313 (403)
T ss_pred HHHHHHHHHhc-----CceEEEeeccChHHHHHHHHHHH-HccCChhheeeccchhhhccceeeehhHHHHHHHHhccCc
Confidence 44455555433 34555322111123443333333 356999999999999999999876532 455
Q ss_pred eEEEeecCCCceEEE
Q psy471 136 NVKLPKMLEPLLVLT 150 (211)
Q Consensus 136 ~vLV~D~GggT~Dvs 150 (211)
.-|-+=|-.|||...
T Consensus 314 ~~l~mPmSSGtTNAw 328 (403)
T COG2069 314 EDLQMPMSSGTTNAW 328 (403)
T ss_pred ccccccccCCCcchh
Confidence 566677777877654
No 65
>cd06007 R3H_DEXH_helicase R3H domain of a group of proteins which also contain a DEXH-box helicase domain, and may function as ATP-dependent DNA or RNA helicases. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=80.61 E-value=5.2 Score=27.18 Aligned_cols=30 Identities=13% Similarity=0.204 Sum_probs=27.4
Q ss_pred eeeEccCCCccHHHHHHHHHHHHHhCCcee
Q psy471 83 DAVITVPAYFNDAQRQATKDAGAIAGLNVM 112 (211)
Q Consensus 83 ~vVItVPa~f~~~qR~al~~Aa~~aGl~~~ 112 (211)
...++.|+.++..+|..+-+.|...|+...
T Consensus 16 ~~~l~Fpp~ls~~eR~~vH~~a~~~gL~s~ 45 (59)
T cd06007 16 NEEYEFPSSLTNHERAVIHRLCRKLGLKSK 45 (59)
T ss_pred ccEEEcCCCCCHHHHHHHHHHHHHcCCCce
Confidence 677999999999999999999999998765
No 66
>PF08735 DUF1786: Putative pyruvate format-lyase activating enzyme (DUF1786); InterPro: IPR014846 This family is annotated as pyruvate formate-lyase activating enzyme (1.97.1.4 from EC) in UniProt. It is not clear where this annotation comes from.
Probab=80.54 E-value=9 Score=33.57 Aligned_cols=72 Identities=19% Similarity=0.246 Sum_probs=48.3
Q ss_pred ccccceeeE--ccCCCccHHHHHHHHHHHHHhCCceeEEeechhHHHHHcc-cccCCCCCceEEEeecCCCceEEEEEe
Q psy471 78 GHSVRDAVI--TVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYG-LDKNLKGERNVKLPKMLEPLLVLTLRK 153 (211)
Q Consensus 78 g~~~~~vVI--tVPa~f~~~qR~al~~Aa~~aGl~~~~lv~EP~AAAl~y~-~~~~~~~~~~vLV~D~GggT~Dvsv~~ 153 (211)
+..+...+- .+|.+|+. -+++++++...|.+. +|-++-+||+.=+ ........+.++++|+|-|.|=..+++
T Consensus 111 g~~~~~~~y~~~~P~~~TR--m~av~~~~~~~~~~~--~vmDTg~AAvlGal~d~~v~~~~~~~~vniGN~HTlaa~v~ 185 (254)
T PF08735_consen 111 GGRPESFVYADDPPPYFTR--MRAVRESLGGAGYDE--VVMDTGPAAVLGALCDPEVSSREGIIVVNIGNGHTLAALVK 185 (254)
T ss_pred CCCHHHeeecCCCcHHHHH--HHHHHHHhccCCCCc--eEecCHHHHHhhhhcChhhhccCCeEEEEeCCccEEEEEEe
Confidence 445566666 78888553 456777777676666 5555555555433 333334678899999999999888874
No 67
>PF00480 ROK: ROK family; InterPro: IPR000600 A family of bacterial proteins has been described which groups transcriptional repressors, sugar kinases and yet uncharacterised open reading frames []. This family, known as ROK (Repressor, ORF, Kinase) includes the xylose operon repressor, xylR, from Bacillus subtilis, Lactobacillus pentosus and Staphylococcus xylosus; N-acetylglucosamine repressor, nagC, from Escherichia coli; glucokinase 2.7.1.2 from EC from Streptomyces coelicolor; fructokinase 2.7.1.4 from EC from Pediococcus pentosaceus, Streptococcus mutans and Zymomonas mobilis; allokinase 2.7.1.55 from EC and mlc from E. coli; and E. coli hypothetical proteins yajF and yhcI and the corresponding Haemophilus influenzae proteins. The repressor proteins (xylR and nagC) from this family possess an N-terminal region not present in the sugar kinases and which contains an helix-turn-helix DNA-binding motif.; PDB: 2GUP_A 3LM2_B 3EO3_A 2YHY_A 2YHW_A 2YI1_A 3MCP_A 1Z05_A 3HTV_A 3OHR_A ....
Probab=79.91 E-value=3.9 Score=32.48 Aligned_cols=45 Identities=24% Similarity=0.030 Sum_probs=31.4
Q ss_pred HhCCceeEEeechhHHHHHcccccCCCCCceEEEeecCCCceEEEEE
Q psy471 106 IAGLNVMRIVNEPTAAALAYGLDKNLKGERNVKLPKMLEPLLVLTLR 152 (211)
Q Consensus 106 ~aGl~~~~lv~EP~AAAl~y~~~~~~~~~~~vLV~D~GggT~Dvsv~ 152 (211)
..++++ .+.|+-.|+|++..+.......++++.+.+|.| .-.+++
T Consensus 90 ~~~~pv-~i~Nd~~~~a~ae~~~~~~~~~~~~~~l~ig~G-iG~~ii 134 (179)
T PF00480_consen 90 RFGVPV-IIENDANAAALAEYWFGAAKDCDNFLYLYIGTG-IGAGII 134 (179)
T ss_dssp HHTSEE-EEEEHHHHHHHHHHHHSTTTTTSSEEEEEESSS-EEEEEE
T ss_pred ccceEE-EEecCCCcceeehhhcCccCCcceEEEEEeecC-CCccee
Confidence 346644 499999999999876555445678888888775 445544
No 68
>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon. The holoenzyme of adenosylcobalamin-dependent ethanolamine ammonia-lyase (EutBC, IPR0092462 from INTERPRO, IPR010628 from INTERPRO), which is part of the ethanolamine utilization pathway [, , ], undergoes suicidal inactivation during catalysis as well as inactivation in the absence of substrate. The inactivation involves the irreversible cleavage of the Co-C bond of the coenzyme. The inactivated holoenzyme undergoes rapid and continuous reactivation in the presence of ATP, Mg2+, and free adenosylcobalamin in permeabilised cells (in situ), homogenate, and cell extracts of Escherichia coli. The EutA protein is essential for reactivation. It was demonstrated with purified recombinant EutA that both the suicidally inactivated and O2-inactivated holoethanolamine ammonia lyase underwent rapid reactivation in vitro by EutA in the presence of adenosylcobalamin, ATP, and Mg2+ []. The inactive enzyme-cyanocobalamin complex was also activated in situ and in vitro by EutA under the same conditions. Thus EutA is believed to be the only component of the reactivating factor for ethanolamine ammonia lyase. Reactivation and activation occur through the exchange of modified coenzyme for free intact adenosylcobalamin []. Bacteria that harbor the ethanolamine utilization pathway can use ethanolamine as a source of carbon and nitrogen. For more information on the ethanolamine utilization pathway, please see IPR009194 from INTERPRO, IPR012408 from INTERPRO.
Probab=79.77 E-value=8.1 Score=36.76 Aligned_cols=94 Identities=14% Similarity=0.032 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHhhccccc-----eeeEccCCCccHHHHHHHHHHHHHhCCceeEEee---chhHHHHHcccccCC-C
Q psy471 62 LFQLLTKMKETAEAYLGHSVR-----DAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVN---EPTAAALAYGLDKNL-K 132 (211)
Q Consensus 62 ~a~iL~~L~~~a~~~~g~~~~-----~vVItVPa~f~~~qR~al~~Aa~~aGl~~~~lv~---EP~AAAl~y~~~~~~-~ 132 (211)
-+.-++.+.....+..|..+. -+.||==..=..+.|..+..-+..||==++...- |..-|+...|....+ .
T Consensus 61 D~~al~~iv~~eY~~Agi~p~~I~TGAVIITGETArKeNA~~v~~~Ls~~aGDFVVATAGPdLEsiiAgkGsGA~~~S~~ 140 (473)
T PF06277_consen 61 DAEALKEIVEEEYRKAGITPEDIDTGAVIITGETARKENAREVLHALSGFAGDFVVATAGPDLESIIAGKGSGAAALSKE 140 (473)
T ss_pred CHHHHHHHHHHHHHHcCCCHHHCccccEEEecchhhhhhHHHHHHHHHHhcCCEEEEccCCCHHHHHhccCccHHHHhhh
Confidence 455666666666666664432 2455555545567777777778888743332221 222233332222221 2
Q ss_pred CCceEEEeecCCCceEEEEEecc
Q psy471 133 GERNVKLPKMLEPLLVLTLRKKK 155 (211)
Q Consensus 133 ~~~~vLV~D~GggT~Dvsv~~~~ 155 (211)
....|+=+|+||||+.++|++-.
T Consensus 141 ~~~~V~NiDIGGGTtN~avf~~G 163 (473)
T PF06277_consen 141 HHTVVANIDIGGGTTNIAVFDNG 163 (473)
T ss_pred hCCeEEEEEeCCCceeEEEEECC
Confidence 56778889999999999998743
No 69
>PRK09557 fructokinase; Reviewed
Probab=76.91 E-value=11 Score=32.91 Aligned_cols=40 Identities=18% Similarity=0.181 Sum_probs=26.7
Q ss_pred HHhCCceeEEeechhHHHHHcccccCCCCCceEEEeecCCC
Q psy471 105 AIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVKLPKMLEP 145 (211)
Q Consensus 105 ~~aGl~~~~lv~EP~AAAl~y~~~~~~~~~~~vLV~D~Ggg 145 (211)
+..|++ +.+.|+..|+|++-.+.......++++.+.+|.|
T Consensus 94 ~~~~~p-v~~~NDa~aaA~aE~~~g~~~~~~~~~~l~igtG 133 (301)
T PRK09557 94 ARLNRE-VRLANDANCLAVSEAVDGAAAGKQTVFAVIIGTG 133 (301)
T ss_pred HHHCCC-EEEccchhHHHHHHHHhcccCCCCcEEEEEEccc
Confidence 345776 4599999999988655433334567777777643
No 70
>cd02640 R3H_NRF R3H domain of the NF-kappaB-repression factor (NRF). NRF is a nuclear inhibitor of NF-kappaB proteins that can silence the IFNbeta promoter via binding to a negative regulatory element (NRE). Beside R3H NRF also contains a G-patch domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=76.81 E-value=12 Score=25.50 Aligned_cols=42 Identities=12% Similarity=0.169 Sum_probs=32.5
Q ss_pred HHHHHHhhccccceeeEccCCCccHHHHHHHHHHHHHhCCcee
Q psy471 70 KETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVM 112 (211)
Q Consensus 70 ~~~a~~~~g~~~~~vVItVPa~f~~~qR~al~~Aa~~aGl~~~ 112 (211)
.+....+..+. ....++.|+.++..+|+.+-..|...|+...
T Consensus 5 ~~~i~~F~~s~-~~~~l~f~p~lt~~eR~~vH~~a~~~gL~s~ 46 (60)
T cd02640 5 RQIIQNYAHSD-DIRDMVFSPEFSKEERALIHQIAQKYGLKSR 46 (60)
T ss_pred HHHHHHHHcCC-ccceEEcCCCCCHHHHHHHHHHHHHcCCcee
Confidence 33444444433 4677899999999999999999999999766
No 71
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=76.27 E-value=24 Score=26.42 Aligned_cols=71 Identities=14% Similarity=0.115 Sum_probs=41.9
Q ss_pred CchHHHHHHHHHHHHHHHhhccccceeeEccCCCccHHHHHHHHHHHHHhCCceeEEeechhHHHHHcccc
Q psy471 58 HSPRLFQLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLD 128 (211)
Q Consensus 58 ~~~~~a~iL~~L~~~a~~~~g~~~~~vVItVPa~f~~~qR~al~~Aa~~aGl~~~~lv~EP~AAAl~y~~~ 128 (211)
.||.+...+..|.+..+++....+.-+.|++|.+-.......++..++..|++...+.+.....+-.|+..
T Consensus 34 ~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~~~v~ 104 (126)
T cd03012 34 CCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDYATWRAYGNQ 104 (126)
T ss_pred CCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCchHHHHHhCCC
Confidence 34556667777777777665444544455555433334566777777788887664444333444556553
No 72
>cd02641 R3H_Smubp-2_like R3H domain of Smubp-2_like proteins. Smubp-2_like proteins also contain a helicase_like and an AN1-like Zinc finger domain and have been shown to bind single-stranded DNA. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA.
Probab=72.69 E-value=16 Score=24.72 Aligned_cols=42 Identities=14% Similarity=0.278 Sum_probs=31.4
Q ss_pred HHHHHHhhccccceeeEccCCCccHHHHHHHHHHHHHhCCcee
Q psy471 70 KETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVM 112 (211)
Q Consensus 70 ~~~a~~~~g~~~~~vVItVPa~f~~~qR~al~~Aa~~aGl~~~ 112 (211)
.+....+..++ ....+..|+.++..||..+-+.|...|+...
T Consensus 5 ~~~i~~F~~~~-~~~~l~F~p~ls~~eR~~vH~lA~~~gL~s~ 46 (60)
T cd02641 5 KAMVKAFMKDP-KATELEFPPTLSSHDRLLVHELAEELGLRHE 46 (60)
T ss_pred HHHHHHHHcCC-CcCcEECCCCCCHHHHHHHHHHHHHcCCceE
Confidence 33344444432 3367899999999999999999999998655
No 73
>PF00815 Histidinol_dh: Histidinol dehydrogenase; InterPro: IPR012131 Histidinol dehydrogenase (HDH) catalyzes the terminal step in the biosynthesis of histidine in bacteria, fungi, and plants, the four-electron oxidation of L-histidinol to histidine. In 4-electron dehydrogenases, a single active site catalyses 2 separate oxidation steps: oxidation of the substrate alcohol to an intermediate aldehyde; and oxidation of the aldehyde to the product acid, in this case His []. The reaction proceeds via a tightly- or covalently-bound inter-mediate, and requires the presence of 2 NAD molecules []. By contrast with most dehydrogenases, the substrate is bound before the NAD coenzyme []. A Cys residue has been implicated in the catalytic mechanism of the second oxidative step []. In bacteria HDH is a single chain polypeptide; in fungi it is the C-terminal domain of a multifunctional enzyme which catalyzes three different steps of histidine biosynthesis; and in plants it is expressed as nuclear encoded protein precursor which is exported to the chloroplast [].; GO: 0004399 histidinol dehydrogenase activity, 0008270 zinc ion binding, 0051287 NAD binding, 0000105 histidine biosynthetic process, 0055114 oxidation-reduction process; PDB: 1KAE_B 1K75_A 1KAH_A 1KAR_B.
Probab=71.67 E-value=18 Score=33.94 Aligned_cols=87 Identities=24% Similarity=0.240 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHhhccccceeeEccCCCccHHHHHHHHHHHHHhCCceeEEeechhH-HHHHcccccCCC-----CCc
Q psy471 62 LFQLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTA-AALAYGLDKNLK-----GER 135 (211)
Q Consensus 62 ~a~iL~~L~~~a~~~~g~~~~~vVItVPa~f~~~qR~al~~Aa~~aGl~~~~lv~EP~A-AAl~y~~~~~~~-----~~~ 135 (211)
++.++.-+-.... .+..+|++-|+.-+..---.+..||.++|++.+..+--..| |||+||...-.+ .+.
T Consensus 123 StvlM~aiPA~vA-----GV~~Iv~~TPp~~~G~i~p~vL~Aa~~~Gv~evy~vGGaqAIAAlAyGTeti~~VDkIvGPG 197 (412)
T PF00815_consen 123 STVLMTAIPAKVA-----GVKEIVVCTPPPKDGKINPAVLAAAHLAGVDEVYKVGGAQAIAALAYGTETIPKVDKIVGPG 197 (412)
T ss_dssp HHHHHHHHHHHHH-----T-SEEEEEE-SS------HHHHHHHHHTT-SEEEE--HHHHHHHHHH--SSS---SEEE---
T ss_pred HHHHHcccchhhc-----CCCeEEEEcCCCccCCCCHHHHHHHHHcCCCEEEecccHHHHHHHHcCCCCCCceeEEECCC
Confidence 4445554444333 47899999998876666778999999999999888888877 668898543211 111
Q ss_pred e------------EEEeecCCCceEEEEEe
Q psy471 136 N------------VKLPKMLEPLLVLTLRK 153 (211)
Q Consensus 136 ~------------vLV~D~GggT~Dvsv~~ 153 (211)
| .+-+||=+|=+.+.|+.
T Consensus 198 N~yV~~AK~~v~g~V~ID~~AGPSEv~ViA 227 (412)
T PF00815_consen 198 NAYVTAAKRLVFGDVGIDMIAGPSEVLVIA 227 (412)
T ss_dssp SHHHHHHHHHHHHS-EES------EEEEEE
T ss_pred cHHHHHHHHHhcCCcccCCCCCCCceEEEE
Confidence 1 34567777777777764
No 74
>cd02646 R3H_G-patch R3H domain of a group of fungal and plant proteins with unknown function, who also contain a G-patch domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the R3H domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=71.13 E-value=11 Score=25.16 Aligned_cols=42 Identities=19% Similarity=0.321 Sum_probs=30.9
Q ss_pred HHHHHHHHhhccccceeeEccCCCccHHHHHHHHHHHHHhCCcee
Q psy471 68 KMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVM 112 (211)
Q Consensus 68 ~L~~~a~~~~g~~~~~vVItVPa~f~~~qR~al~~Aa~~aGl~~~ 112 (211)
.+.+....++... ...++.|+ ++..+|+.+-+.|...|+...
T Consensus 3 ~i~~~i~~F~~~~--~~~~~fpp-m~~~~R~~vH~lA~~~~L~S~ 44 (58)
T cd02646 3 DIKDEIEAFLLDS--RDSLSFPP-MDKHGRKTIHKLANCYNLKSK 44 (58)
T ss_pred HHHHHHHHHHhCC--CceEecCC-CCHHHHHHHHHHHHHcCCccc
Confidence 3444455555433 45679999 899999999999999988654
No 75
>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [].
Probab=68.63 E-value=1.6 Score=44.31 Aligned_cols=7 Identities=14% Similarity=0.477 Sum_probs=3.1
Q ss_pred HHHHHHH
Q psy471 62 LFQLLTK 68 (211)
Q Consensus 62 ~a~iL~~ 68 (211)
...|+.+
T Consensus 186 m~EiIaK 192 (840)
T PF04147_consen 186 MEEIIAK 192 (840)
T ss_pred HHHHHHH
Confidence 4444444
No 76
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=68.52 E-value=5.4 Score=30.30 Aligned_cols=20 Identities=0% Similarity=0.003 Sum_probs=16.5
Q ss_pred EEEeecCCCceEEEEEeccc
Q psy471 137 VKLPKMLEPLLVLTLRKKKK 156 (211)
Q Consensus 137 vLV~D~GggT~Dvsv~~~~~ 156 (211)
|+++|+|++++.+.+++...
T Consensus 1 i~~iDiGs~~~~~~i~~~~~ 20 (120)
T PF14450_consen 1 IVVIDIGSSKTKVAIAEDGS 20 (120)
T ss_dssp EEEEEE-SSSEEEEEEETTE
T ss_pred CEEEEcCCCcEEEEEEEeCC
Confidence 68999999999999998643
No 77
>cd02639 R3H_RRM R3H domain of mainly fungal proteins which are associated with a RNA recognition motif (RRM) domain. Present in this group is the RNA-binding post-transcriptional regulator Cip2 (Csx1-interacting protein 2) involved in counteracting Csx1 function. Csx1 plays a central role in controlling gene expression during oxidative stress. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=66.01 E-value=12 Score=25.50 Aligned_cols=31 Identities=19% Similarity=0.273 Sum_probs=27.5
Q ss_pred ceeeEccCCCccHHHHHHHHHHHHHhCCcee
Q psy471 82 RDAVITVPAYFNDAQRQATKDAGAIAGLNVM 112 (211)
Q Consensus 82 ~~vVItVPa~f~~~qR~al~~Aa~~aGl~~~ 112 (211)
..-.+..|+.+++.+|+.+-..|...|+...
T Consensus 16 ~~~eL~Fp~~ls~~eRriih~la~~lGL~~~ 46 (60)
T cd02639 16 MRDELAFPSSLSPAERRIVHLLASRLGLNHV 46 (60)
T ss_pred CceEEEcCCCCCHHHHHHHHHHHHHcCCceE
Confidence 3667888999999999999999999998765
No 78
>PF13941 MutL: MutL protein
Probab=65.56 E-value=4.7 Score=38.19 Aligned_cols=59 Identities=17% Similarity=0.112 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHH-----HhCCce------eEEeechhHHHHHcccccCCCCCceEEEeecCCCceEEEEEe
Q psy471 94 DAQRQATKDAGA-----IAGLNV------MRIVNEPTAAALAYGLDKNLKGERNVKLPKMLEPLLVLTLRK 153 (211)
Q Consensus 94 ~~qR~al~~Aa~-----~aGl~~------~~lv~EP~AAAl~y~~~~~~~~~~~vLV~D~GggT~Dvsv~~ 153 (211)
...|+++++... .-|++. ..+++=|.|+.....+-.. .....+|++|+||-|||+--+.
T Consensus 197 ~paR~~I~~~F~~~Ii~akGl~~~~~~~~~~i~PTP~AVl~~~~lla~-~~~g~llvVDIGGATTDVhSv~ 266 (457)
T PF13941_consen 197 EPAREAIREVFLRHIIQAKGLSKLREMVDGPIMPTPAAVLRAAELLAE-GGIGDLLVVDIGGATTDVHSVA 266 (457)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHhCCcccCCHHHHHHHHHHHHh-cccCCEEEEEccCcccchhhhc
Confidence 355666665543 235532 3456666665544322221 1678899999999999986554
No 79
>KOG0676|consensus
Probab=65.29 E-value=16 Score=33.69 Aligned_cols=58 Identities=12% Similarity=0.047 Sum_probs=37.7
Q ss_pred ceeeEccCCCccHHHHHHHHHH-HHHhCCceeEEeechhHHHHHcccccCCCCCceEEEeecCCCceE
Q psy471 82 RDAVITVPAYFNDAQRQATKDA-GAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVKLPKMLEPLLV 148 (211)
Q Consensus 82 ~~vVItVPa~f~~~qR~al~~A-a~~aGl~~~~lv~EP~AAAl~y~~~~~~~~~~~vLV~D~GggT~D 148 (211)
..+++|-|+.++...|..+.+. .+..+++.+.+ .-.|.+++++. .+-+|+|+|.|-+.
T Consensus 100 ~pvllte~pl~p~~nREk~tqi~FE~fnvpa~yv--a~qavlya~g~-------ttG~VvD~G~gvt~ 158 (372)
T KOG0676|consen 100 HPVLLTEPPLNPKANREKLTQIMFETFNVPALYV--AIQAVLYASGR-------TTGLVVDSGDGVTH 158 (372)
T ss_pred CceEeecCCCCchHhHHHHHHHhhhhcCccHhHH--HHHHHHHHcCC-------eeEEEEEcCCCcee
Confidence 5799999999999999877765 34445444433 22333433333 34589999998653
No 80
>KOG1385|consensus
Probab=64.78 E-value=6.9 Score=36.71 Aligned_cols=91 Identities=19% Similarity=0.150 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHhhcc---ccceeeEccCCCc-------cHHHHHHHHHHHH-----HhCCceeEEeechhHHHHH--
Q psy471 62 LFQLLTKMKETAEAYLGH---SVRDAVITVPAYF-------NDAQRQATKDAGA-----IAGLNVMRIVNEPTAAALA-- 124 (211)
Q Consensus 62 ~a~iL~~L~~~a~~~~g~---~~~~vVItVPa~f-------~~~qR~al~~Aa~-----~aGl~~~~lv~EP~AAAl~-- 124 (211)
.+.-|+-|.+.|+..... +...+++-.-|.+ ...--+++|+-.+ .+..+.+.|++-..-..++
T Consensus 119 aA~Sl~~LLd~A~~~vP~~~~~kTPi~lkATAGLRlL~~~ka~~IL~aVre~l~~~s~f~v~~d~VsIm~GtdEGv~aWi 198 (453)
T KOG1385|consen 119 AANSLRPLLDVAEAFVPREHWKKTPIVLKATAGLRLLPGSKADNILQAVRELLKNDSPFPVVEDAVSIMDGTDEGVYAWI 198 (453)
T ss_pred HHHhHHHHHHHHHhhCCHhHhccCceEEEeecccccCChhHHHHHHHHHHHHHhccCCccccCCceeeccCcccceeeee
Confidence 456677788888877642 2334555444433 2222333333333 1122345565544333222
Q ss_pred ---cccccCCC-CCceEEEeecCCCceEEEEE
Q psy471 125 ---YGLDKNLK-GERNVKLPKMLEPLLVLTLR 152 (211)
Q Consensus 125 ---y~~~~~~~-~~~~vLV~D~GggT~Dvsv~ 152 (211)
|.++.-.. ..++|.|+|+|||+|.++..
T Consensus 199 TiN~Llg~L~~~~~~tvgv~DLGGGSTQi~f~ 230 (453)
T KOG1385|consen 199 TINYLLGTLGAPGHRTVGVVDLGGGSTQITFL 230 (453)
T ss_pred ehhhhhcccCCCCCCceEEEEcCCceEEEEEe
Confidence 33333222 36889999999999999975
No 81
>KOG1832|consensus
Probab=60.53 E-value=3.2 Score=42.56 Aligned_cols=9 Identities=0% Similarity=-0.278 Sum_probs=3.6
Q ss_pred eecCCCceE
Q psy471 140 PKMLEPLLV 148 (211)
Q Consensus 140 ~D~GggT~D 148 (211)
+||-..++|
T Consensus 1363 ~Dlct~~~D 1371 (1516)
T KOG1832|consen 1363 LDLCTEPTD 1371 (1516)
T ss_pred hhhhcCCcc
Confidence 344443333
No 82
>PF00349 Hexokinase_1: Hexokinase; InterPro: IPR022672 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF03727 from PFAM. Some hexokinases have two copies of each of these domains. This entry represents the N-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3O1W_A 3O6W_A 3O4W_B 3O08_B 3O80_A 3O5B_A 3O8M_A 3O1B_A 1BG3_A 4DHY_A ....
Probab=60.35 E-value=8.7 Score=32.36 Aligned_cols=26 Identities=8% Similarity=-0.055 Sum_probs=23.0
Q ss_pred CCceEEEeecCCCceEEEEEeccchh
Q psy471 133 GERNVKLPKMLEPLLVLTLRKKKKKK 158 (211)
Q Consensus 133 ~~~~vLV~D~GggT~Dvsv~~~~~~~ 158 (211)
..+.+|++||||.++=++++++.+.+
T Consensus 61 E~G~~LalDlGGTnlRv~~V~L~g~~ 86 (206)
T PF00349_consen 61 EKGDFLALDLGGTNLRVALVELSGNG 86 (206)
T ss_dssp TEEEEEEEEESSSSEEEEEEEEESSS
T ss_pred CCceEEEEeecCcEEEEEEEEEcCCC
Confidence 45678999999999999999998865
No 83
>KOG4816|consensus
Probab=60.08 E-value=12 Score=27.58 Aligned_cols=62 Identities=15% Similarity=0.065 Sum_probs=40.3
Q ss_pred hcccCcccchhhHhhhhhcCCCCCcccceec-ceeeccccCCCchHHHHHHHHHHHHHHHhhc
Q psy471 17 QNQPCQATDNNIGYLARSFEGPEWDYGHVRL-RKSFSPRCCHHSPRLFQLLTKMKETAEAYLG 78 (211)
Q Consensus 17 ~~~~~~~p~n~~~~l~r~~~g~~~~~~~~~~-~k~~speel~~~~~~a~iL~~L~~~a~~~~g 78 (211)
.+.+.-++.|+..+-...........+.+.. .+.+.++||+.+--...+|++|.+.|.+.+.
T Consensus 6 kgLPvynksNFSrfh~dsvckaSn~rPsvYlPTreyPseQiIvTEktNILlRylhQqw~kk~~ 68 (98)
T KOG4816|consen 6 KGLPVYNKSNFSRFHPDSVCKASNMRPSVYLPTREYPSEQIIVTEKTNILLRYLHQQWEKKLR 68 (98)
T ss_pred cCCCccCcccccccCCCCccchhccCccccccccCCCchheeeehhhHHHHHHHHHHHHHhcc
Confidence 3445555555555544444444433333333 4568889998888888999999999986653
No 84
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=59.26 E-value=52 Score=28.56 Aligned_cols=40 Identities=20% Similarity=0.104 Sum_probs=27.0
Q ss_pred HHhCCceeEEeechhHHHHHcccccCCCCCceEEEeecCCC
Q psy471 105 AIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVKLPKMLEP 145 (211)
Q Consensus 105 ~~aGl~~~~lv~EP~AAAl~y~~~~~~~~~~~vLV~D~Ggg 145 (211)
+..|++ +.+.|+..|+|++-.+.......++++.+.+|.|
T Consensus 94 ~~~~~p-V~ieNDa~aaalaE~~~g~~~~~~~~~~l~~gtG 133 (303)
T PRK13310 94 ARLGRD-VRLDNDANCFALSEAWDDEFTQYPLVMGLILGTG 133 (303)
T ss_pred HHHCCC-eEEeccHhHHHHHHhhhccccCCCcEEEEEecCc
Confidence 445776 4499999999988544433234567777777754
No 85
>KOG2697|consensus
Probab=57.19 E-value=18 Score=32.84 Aligned_cols=74 Identities=18% Similarity=0.147 Sum_probs=55.2
Q ss_pred ccceeeEccCCCccHHHHHHHHHHHHHhCCceeEEeechhH-HHHHcccccCCC---------------------CCceE
Q psy471 80 SVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTA-AALAYGLDKNLK---------------------GERNV 137 (211)
Q Consensus 80 ~~~~vVItVPa~f~~~qR~al~~Aa~~aGl~~~~lv~EP~A-AAl~y~~~~~~~---------------------~~~~v 137 (211)
.+..+|++-|..=...--.-+.-+|+.+|...+-+.--..| ||++||...-.+ +-..+
T Consensus 156 gCk~vV~atPprKDG~v~pEvvY~A~k~Ga~~I~lAGGAQAiAAMAyGt~~~PKV~KIfGPGNQfVTAAKM~vQNd~~Al 235 (446)
T KOG2697|consen 156 GCKTVVLATPPRKDGSVCPEVVYCAKKAGATHILLAGGAQAIAAMAYGTDSCPKVEKIFGPGNQFVTAAKMIVQNDYEAL 235 (446)
T ss_pred CCceEEEecCCCcCCccCcceeeehhhcChhheeccccHHHHHHHHhccccCcchhhhcCCchhhhhhhhhheeccccce
Confidence 37889999999877666667778889999988877777666 668887553211 22446
Q ss_pred EEeecCCCceEEEEEe
Q psy471 138 KLPKMLEPLLVLTLRK 153 (211)
Q Consensus 138 LV~D~GggT~Dvsv~~ 153 (211)
+-+||-+|-..+-|+.
T Consensus 236 vsIDmPAGPSEVLVIA 251 (446)
T KOG2697|consen 236 VSIDMPAGPSEVLVIA 251 (446)
T ss_pred EEeccCCCCceEEEEe
Confidence 6799999999888875
No 86
>PRK00877 hisD bifunctional histidinal dehydrogenase/ histidinol dehydrogenase; Reviewed
Probab=57.02 E-value=21 Score=33.66 Aligned_cols=73 Identities=27% Similarity=0.308 Sum_probs=53.2
Q ss_pred ccceeeEccCCCccHHHHHHHHHHHHHhCCceeEEeechhH-HHHHcccccCCC-----CCc------------eEEEee
Q psy471 80 SVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTA-AALAYGLDKNLK-----GER------------NVKLPK 141 (211)
Q Consensus 80 ~~~~vVItVPa~f~~~qR~al~~Aa~~aGl~~~~lv~EP~A-AAl~y~~~~~~~-----~~~------------~vLV~D 141 (211)
.+..+|+.-|+. +..---.++-||..+|++.+.-+--..| |||+||-..-.+ .+. ..+-+|
T Consensus 150 GV~~Iv~~TPp~-~g~i~p~vL~AA~~~Gv~eIy~vGGAQAIAAlAyGTetIp~VDkIvGPGN~yV~~AK~~v~g~V~ID 228 (425)
T PRK00877 150 GVKEIVMVTPPP-DGEINPAILAAAALAGVDEVYKVGGAQAIAALAYGTESIPKVDKIVGPGNIYVTAAKRLVFGVVGID 228 (425)
T ss_pred CCCeEEEEeCCC-CCCCCHHHHHHHHHcCCCeeeccCCHHHHHHHHcCCCCCCCCcEEECCCcHHHHHHHHHHcCCcCcC
Confidence 478899999986 4455678889999999999988888888 678898643322 111 134577
Q ss_pred cCCCceEEEEEe
Q psy471 142 MLEPLLVLTLRK 153 (211)
Q Consensus 142 ~GggT~Dvsv~~ 153 (211)
|=+|-+++.|+.
T Consensus 229 ~~AGPSEvlViA 240 (425)
T PRK00877 229 MIAGPSEILVIA 240 (425)
T ss_pred CCCCCceeEEEe
Confidence 777888887775
No 87
>COG1214 Inactive homolog of metal-dependent proteases, putative molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=56.90 E-value=63 Score=27.36 Aligned_cols=76 Identities=13% Similarity=0.100 Sum_probs=42.7
Q ss_pred ccceeeEcc-CCCccHHHHHHHHHHHHHhCCceeEEeechhHHHHHcccccCCCCCceEEEeecCCCceEEEEEeccch
Q psy471 80 SVRDAVITV-PAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVKLPKMLEPLLVLTLRKKKKK 157 (211)
Q Consensus 80 ~~~~vVItV-Pa~f~~~qR~al~~Aa~~aGl~~~~lv~EP~AAAl~y~~~~~~~~~~~vLV~D~GggT~Dvsv~~~~~~ 157 (211)
.+..+++++ |.+|+...--......-..++++. ++.=++-.+++...... ......+++|-+.|-+-.++++..+.
T Consensus 58 dld~iav~~GPGSFTGlRIG~~~AkgLA~~l~ip-lvgvssL~~~A~~~~~~-~~~~v~v~idArr~~vY~~~y~~~~~ 134 (220)
T COG1214 58 DLDAIAVAKGPGSFTGLRIGVAFAKGLALALNIP-LVGVSSLEALAQGGAEK-NAGFVLVAIDARRGEVYWAEYQRSGG 134 (220)
T ss_pred HCCEEEEccCCCcccchhhHHHHHHHHHHHcCCC-EEEeCHHHHHHHhhhcc-CCCceEEEEeccccceEeEeeecCCC
Confidence 466777777 788887655544433333333322 33333344444442221 23344444999999999999986653
No 88
>PTZ00415 transmission-blocking target antigen s230; Provisional
Probab=56.66 E-value=5.2 Score=43.63 Aligned_cols=8 Identities=13% Similarity=-0.076 Sum_probs=3.2
Q ss_pred CceEEEEE
Q psy471 145 PLLVLTLR 152 (211)
Q Consensus 145 gT~Dvsv~ 152 (211)
|++|.-++
T Consensus 125 ~~~d~~i~ 132 (2849)
T PTZ00415 125 GDLDMIII 132 (2849)
T ss_pred CCcceEEe
Confidence 34444443
No 89
>PF02724 CDC45: CDC45-like protein; InterPro: IPR003874 CDC45 is an essential gene required for initiation of DNA replication in Saccharomyces cerevisiae (cell division control protein 45), forming a complex with MCM5/CDC46. Homologs of CDC45 have been identified in human [], mouse and the smut fungus, Melampsora spp., (tsd2 protein) among others.; GO: 0006270 DNA-dependent DNA replication initiation
Probab=55.47 E-value=7 Score=38.40 Aligned_cols=16 Identities=13% Similarity=-0.199 Sum_probs=9.2
Q ss_pred CceEEEeecCCCceEE
Q psy471 134 ERNVKLPKMLEPLLVL 149 (211)
Q Consensus 134 ~~~vLV~D~GggT~Dv 149 (211)
...|.|+|-|.-..++
T Consensus 96 ~~~v~v~ddg~~~~~l 111 (622)
T PF02724_consen 96 NDQVIVFDDGDIEEEL 111 (622)
T ss_pred CCcEEEEECCChhhhc
Confidence 5566666666544443
No 90
>cd06572 Histidinol_dh Histidinol dehydrogenase, HisD, E.C 1.1.1.23. Histidinol dehydrogenase catalyzes the last two steps in the L-histidine biosynthesis pathway, which is conserved in bacteria, archaea, fungi, and plants. These last two steps are (i) the NAD-dependent oxidation of L-histidinol to L-histidinaldehyde, and (ii) the NAD-dependent oxidation of L-histidinaldehyde to L-histidine. In most fungi and in the unicellular choanoflagellate Monosiga bevicollis, the HisD domain is fused with units that catalyze the second and third biosynthesis steps in this same pathway.
Probab=54.61 E-value=44 Score=31.12 Aligned_cols=74 Identities=26% Similarity=0.247 Sum_probs=52.1
Q ss_pred ccceeeEccCCCccHHHHHHHHHHHHHhCCceeEEeechhH-HHHHcccccCCC-----CCce------------EEEee
Q psy471 80 SVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTA-AALAYGLDKNLK-----GERN------------VKLPK 141 (211)
Q Consensus 80 ~~~~vVItVPa~f~~~qR~al~~Aa~~aGl~~~~lv~EP~A-AAl~y~~~~~~~-----~~~~------------vLV~D 141 (211)
.+..+|+..|+.=+..--..++-||..+|++.+..+--..| ||++||...-.+ .+.| .+-+|
T Consensus 122 GV~~Iv~~TPp~~~g~i~p~iL~aa~~~Gv~eiy~vGGaQAIAAlAyGTesi~~VDkIvGPGN~yV~~AK~~v~g~V~ID 201 (390)
T cd06572 122 GVKEIVVVTPPRKDGKINPAILAAAKLAGVDEIYKVGGAQAIAALAYGTETIPKVDKIVGPGNIYVTAAKRLVSGDVGID 201 (390)
T ss_pred CCCeEEEEeCcCCCCCCCHHHHHHHHHcCCcEEeccCCHHHHHHHHcCCcCCCCCCEeeCCchHHHHHHHHHhcCCcCcc
Confidence 37889999998533334567888999999998888888877 678898543211 1111 22478
Q ss_pred cCCCceEEEEEe
Q psy471 142 MLEPLLVLTLRK 153 (211)
Q Consensus 142 ~GggT~Dvsv~~ 153 (211)
|=.|-+++-|+.
T Consensus 202 ~~AGPSEvlIiA 213 (390)
T cd06572 202 MPAGPSEVLVIA 213 (390)
T ss_pred CCCCCceEEEEe
Confidence 888888888875
No 91
>PF01150 GDA1_CD39: GDA1/CD39 (nucleoside phosphatase) family; InterPro: IPR000407 A number of nucleoside diphosphate and triphosphate hydrolases as well as some yet uncharacterised proteins have been found to belong to the same family [, ]. The uncharacterised proteins all seem to be membrane-bound. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0016787 hydrolase activity; PDB: 3AAP_A 3AAR_A 3AAQ_A 3AGR_A 4A5B_B 4A57_D 4A59_A 4A5A_B 3CJA_A 3CJ1_A ....
Probab=54.44 E-value=16 Score=33.77 Aligned_cols=93 Identities=11% Similarity=0.069 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHHhhccc---cceeeEccCCCc---cHHHHHHHHHHHHH-----hCCc----eeEEeechhHHHHHc-
Q psy471 62 LFQLLTKMKETAEAYLGHS---VRDAVITVPAYF---NDAQRQATKDAGAI-----AGLN----VMRIVNEPTAAALAY- 125 (211)
Q Consensus 62 ~a~iL~~L~~~a~~~~g~~---~~~vVItVPa~f---~~~qR~al~~Aa~~-----aGl~----~~~lv~EP~AAAl~y- 125 (211)
++..|+.|...|.+.+... ...+.|-..|.. +..++.++.+++.. .++. -+++|+-..=++++|
T Consensus 65 ~~~~l~~ll~~a~~~ip~~~~~~tpi~l~ATAGmRlL~~~~~~~il~~~~~~l~~~~~f~~~~~~v~visG~eEg~y~Wv 144 (434)
T PF01150_consen 65 AAESLQPLLDFAKSVIPKSQHSSTPIYLGATAGMRLLPEEQQEAILDEVRNYLRSSSPFPFRDSWVRVISGEEEGIYGWV 144 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCHEEEEEEE-HHHHTHHHHHHHHHHHHHHHCHHCHCTSSEEETTCEE--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCCHHHhCCeeEEEecccccEECChhhHHHHHHHHHHhhccCCCCccCccceEecCHHHhhHhHHH
Confidence 5567777878777766532 222333333221 34566666666542 2443 377888777666554
Q ss_pred ----ccccCCC------CCceEEEeecCCCceEEEEEec
Q psy471 126 ----GLDKNLK------GERNVKLPKMLEPLLVLTLRKK 154 (211)
Q Consensus 126 ----~~~~~~~------~~~~vLV~D~GggT~Dvsv~~~ 154 (211)
.+.+-.. ...++-++||||+++.++..--
T Consensus 145 tvNyl~g~l~~~~~~~~~~~t~g~lDlGGaStQIaf~~~ 183 (434)
T PF01150_consen 145 TVNYLLGRLDSSGASKSPSNTVGALDLGGASTQIAFEPS 183 (434)
T ss_dssp HHHHHTTTSSSSTEEEEESS-EEEEEE-SSEEEEEEEET
T ss_pred HHHHHhCccccccccCCCCceEEEEecCCcceeeeeccC
Confidence 3332222 3588999999999999996543
No 92
>PF14628 DUF4454: Domain of unknown function (DUF4454)
Probab=54.40 E-value=16 Score=30.86 Aligned_cols=21 Identities=29% Similarity=0.389 Sum_probs=16.9
Q ss_pred eeeEccCCCccHHHHHHHHHH
Q psy471 83 DAVITVPAYFNDAQRQATKDA 103 (211)
Q Consensus 83 ~vVItVPa~f~~~qR~al~~A 103 (211)
.-.|+||+..++.|-+++.+.
T Consensus 53 ~GtIsvP~~iT~eQ~~~~l~~ 73 (216)
T PF14628_consen 53 EGTISVPASITPEQYEAVLKE 73 (216)
T ss_pred cceEEeeeecCHHHHHHHHhC
Confidence 357999999999999875543
No 93
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=54.22 E-value=47 Score=28.64 Aligned_cols=38 Identities=21% Similarity=0.098 Sum_probs=25.0
Q ss_pred HhCCceeEEeechhHHHHHcccccCCCCCceEEEeecCCC
Q psy471 106 IAGLNVMRIVNEPTAAALAYGLDKNLKGERNVKLPKMLEP 145 (211)
Q Consensus 106 ~aGl~~~~lv~EP~AAAl~y~~~~~~~~~~~vLV~D~Ggg 145 (211)
..|++ +.+.|+..|+|++-.+.. ....++++.+.+|.|
T Consensus 95 ~~~~p-v~v~NDa~a~a~aE~~~g-~~~~~~~~~l~ig~G 132 (291)
T PRK05082 95 LTDLP-TIALNDAQAAAWAEYQAL-PDDIRNMVFITVSTG 132 (291)
T ss_pred HhCCC-EEEECcHHHHHHHHHHhc-CCCCCCEEEEEECCC
Confidence 35776 449999999998754332 234556777777743
No 94
>PRK13770 histidinol dehydrogenase; Provisional
Probab=54.08 E-value=43 Score=31.47 Aligned_cols=73 Identities=23% Similarity=0.158 Sum_probs=51.0
Q ss_pred ccceeeEccCCCccHHHHHHHHHHHHHhCCceeEEeechhH-HHHHcccccCCCC-----Cce------------EEEee
Q psy471 80 SVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTA-AALAYGLDKNLKG-----ERN------------VKLPK 141 (211)
Q Consensus 80 ~~~~vVItVPa~f~~~qR~al~~Aa~~aGl~~~~lv~EP~A-AAl~y~~~~~~~~-----~~~------------vLV~D 141 (211)
.+..+|+.-|+.-+. --..+.-||..+|++.+.-+--..| |||+||-..-.+. +.| .+-+|
T Consensus 140 GV~~Iv~~TPp~~~~-i~p~iL~Aa~~~Gv~eIy~iGGAQAIAAlAyGTetIp~VDkIvGPGN~yV~~AK~~v~g~V~ID 218 (416)
T PRK13770 140 GVENIVVVTPPQPNG-VSQEVLAACYITQVNQVFQVGGAQSIAALTYGTETIPKVDKIVGPGNQFVAYAKKYLFGQVGID 218 (416)
T ss_pred CCCeEEEEeCcCCCC-CCHHHHHHHHHcCCCeeeccCCHHHHHHHHcCCCCCCCCcEEECCCcHHHHHHHHHhcCCcCcC
Confidence 378888888874222 5567888999999999888888888 6789986433221 111 24477
Q ss_pred cCCCceEEEEEe
Q psy471 142 MLEPLLVLTLRK 153 (211)
Q Consensus 142 ~GggT~Dvsv~~ 153 (211)
|=+|=+.+.|+.
T Consensus 219 ~~AGPSEvlViA 230 (416)
T PRK13770 219 QIAGPTEIALII 230 (416)
T ss_pred CCCCCceeEEEe
Confidence 777888887775
No 95
>PF14283 DUF4366: Domain of unknown function (DUF4366)
Probab=53.38 E-value=7.5 Score=33.26 Aligned_cols=19 Identities=21% Similarity=0.004 Sum_probs=8.8
Q ss_pred cCCCceEEEEEeccchhhhhh
Q psy471 142 MLEPLLVLTLRKKKKKKKKKK 162 (211)
Q Consensus 142 ~GggT~Dvsv~~~~~~~eee~ 162 (211)
+|||-+ .-+++.++|++..
T Consensus 172 ~gGGa~--yYfK~~K~K~~~~ 190 (218)
T PF14283_consen 172 IGGGAY--YYFKFYKPKQEEK 190 (218)
T ss_pred hhcceE--EEEEEeccccccc
Confidence 555554 3344545444433
No 96
>COG4012 Uncharacterized protein conserved in archaea [Function unknown]
Probab=53.21 E-value=40 Score=30.13 Aligned_cols=60 Identities=15% Similarity=0.126 Sum_probs=37.2
Q ss_pred cCCCccHHHHHHHHHHHHHhCCceeEEeechhHHHHHcccccCCCCCceEEEeecCCCceEEEEEe
Q psy471 88 VPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVKLPKMLEPLLVLTLRK 153 (211)
Q Consensus 88 VPa~f~~~qR~al~~Aa~~aGl~~~~lv~EP~AAAl~y~~~~~~~~~~~vLV~D~GggT~Dvsv~~ 153 (211)
+|.+|+... .+.. .+..++.. +-+++.-.||++...++.. -..+||+|+|-|.+-.+++.
T Consensus 186 iPe~FtRMr-aaa~-sal~~~t~-av~mDskfaav~gal~dpa---a~palvVd~GngHttaalvd 245 (342)
T COG4012 186 IPESFTRMR-AAAM-SALSAGTD-AVAMDSKFAAVMGALVDPA---ADPALVVDYGNGHTTAALVD 245 (342)
T ss_pred CchhHHHHH-HHHH-HHHhcCce-EEEEcchhHhhhhcccCcc---cCceEEEEccCCceEEEEec
Confidence 566665422 1111 22234433 4467777777766655543 34899999999999988864
No 97
>TIGR00069 hisD histidinol dehydrogenase. This model describes a polypeptide sequence catalyzing the final step in histidine biosynthesis, found sometimes as an independent protein and sometimes as a part of a multifunctional protein.
Probab=53.14 E-value=36 Score=31.71 Aligned_cols=74 Identities=23% Similarity=0.177 Sum_probs=51.0
Q ss_pred ccceeeEccCCCccHHHHHHHHHHHHHhCCceeEEeechhH-HHHHcccccCCCC-----Cc------------eEEEee
Q psy471 80 SVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTA-AALAYGLDKNLKG-----ER------------NVKLPK 141 (211)
Q Consensus 80 ~~~~vVItVPa~f~~~qR~al~~Aa~~aGl~~~~lv~EP~A-AAl~y~~~~~~~~-----~~------------~vLV~D 141 (211)
.+..+|+..|+.-+..---.++-||..+|++.+..+--..| |||+||...-.+. +. ..+-+|
T Consensus 118 GV~~Iv~~TPp~~~g~i~p~iL~AA~~~Gv~eIy~vGGAQAIAAlAyGTesIp~VDkIvGPGN~yV~~AK~~v~g~V~ID 197 (393)
T TIGR00069 118 GVKEIVVCTPPGKDGKINPAVLAAAKLAGVDEVYKVGGAQAIAALAYGTETVPKVDKIVGPGNIYVTAAKKLVFGDVGID 197 (393)
T ss_pred CCCeEEEEeCCCcCCCCCHHHHHHHHHcCCCeehhcCCHHHHHHHHcCCCCCCCCcEEECCCcHHHHHHHHHhcCccCcC
Confidence 37888999997422234567888999999999888888888 6788986543221 11 134567
Q ss_pred cCCCceEEEEEe
Q psy471 142 MLEPLLVLTLRK 153 (211)
Q Consensus 142 ~GggT~Dvsv~~ 153 (211)
|=.|=+.+.|+.
T Consensus 198 ~~AGPSEvlViA 209 (393)
T TIGR00069 198 MPAGPSEVLVIA 209 (393)
T ss_pred CCCCCceEEEEe
Confidence 777777777764
No 98
>COG5026 Hexokinase [Carbohydrate transport and metabolism]
Probab=53.09 E-value=14 Score=34.99 Aligned_cols=25 Identities=12% Similarity=-0.106 Sum_probs=22.6
Q ss_pred CCceEEEeecCCCceEEEEEeccch
Q psy471 133 GERNVKLPKMLEPLLVLTLRKKKKK 157 (211)
Q Consensus 133 ~~~~vLV~D~GggT~Dvsv~~~~~~ 157 (211)
..+.+|++|+||.++-++++++.+.
T Consensus 73 e~g~~LaiD~GGTnlRvc~V~l~g~ 97 (466)
T COG5026 73 ESGSVLAIDLGGTNLRVCLVVLGGD 97 (466)
T ss_pred CCCCEEEEecCCceEEEEEEEeCCC
Confidence 5788999999999999999999863
No 99
>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=50.15 E-value=58 Score=28.36 Aligned_cols=40 Identities=30% Similarity=0.185 Sum_probs=27.1
Q ss_pred HHhCCceeEEeechhHHHHHcccccCCCCCceEEEeecCCC
Q psy471 105 AIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVKLPKMLEP 145 (211)
Q Consensus 105 ~~aGl~~~~lv~EP~AAAl~y~~~~~~~~~~~vLV~D~Ggg 145 (211)
+..|+++ .+-|+..|||++-.+.......++++.+-+|.|
T Consensus 104 ~~~~~Pv-~veNDan~aalaE~~~g~~~~~~~~~~i~~gtG 143 (314)
T COG1940 104 ARLGLPV-FVENDANAAALAEAWFGAGRGIDDVVYITLGTG 143 (314)
T ss_pred HHHCCCE-EEecHHHHHHHHHHHhCCCCCCCCEEEEEEccc
Confidence 3455554 499999999999766654345556666666654
No 100
>PRK12447 histidinol dehydrogenase; Reviewed
Probab=49.29 E-value=40 Score=31.80 Aligned_cols=73 Identities=18% Similarity=0.171 Sum_probs=50.9
Q ss_pred ccceeeEccCCCccHHHHHHHHHHHHHhCCceeEEeechhH-HHHHcccccCCCC-----Cce------------EEEee
Q psy471 80 SVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTA-AALAYGLDKNLKG-----ERN------------VKLPK 141 (211)
Q Consensus 80 ~~~~vVItVPa~f~~~qR~al~~Aa~~aGl~~~~lv~EP~A-AAl~y~~~~~~~~-----~~~------------vLV~D 141 (211)
.+..+|+..|+.-+. ---.++-||..+|++.+.-+--..| |||+||-..-.+. +.| .+-+|
T Consensus 145 GV~~Iv~~TPp~~~~-i~p~iL~Aa~~~Gv~eIy~vGGAQAIAAlAyGTetIp~VDkIvGPGN~yV~~AK~~v~g~V~ID 223 (426)
T PRK12447 145 GVKRVIACTPPFPGE-PPPAIVAAMHLAGADEIYVLGGVQAVAAMAYGTETIKPVDMLVGPGNAYVAEAKRQLFGRVGID 223 (426)
T ss_pred CCCeEEEEeCCCCCC-CCHHHHHHHHHcCCCeehhcCCHHHHHHHHcCCCCCCCCcEEECCCcHHHHHHHHHhcCccCcC
Confidence 378889999874322 5567778999999998888888777 6788986433221 111 24577
Q ss_pred cCCCceEEEEEe
Q psy471 142 MLEPLLVLTLRK 153 (211)
Q Consensus 142 ~GggT~Dvsv~~ 153 (211)
|=+|=+++.|+.
T Consensus 224 ~~AGPSEvlViA 235 (426)
T PRK12447 224 LFAGPTETLVIA 235 (426)
T ss_pred CCCCCceeEEEe
Confidence 778888887775
No 101
>COG0141 HisD Histidinol dehydrogenase [Amino acid transport and metabolism]
Probab=49.14 E-value=15 Score=34.43 Aligned_cols=73 Identities=25% Similarity=0.261 Sum_probs=51.9
Q ss_pred ccceeeEccCCCccHHHHHHHHHHHHHhCCceeEEeechhH-HHHHcccccCCC-----CCc------------eEEEee
Q psy471 80 SVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTA-AALAYGLDKNLK-----GER------------NVKLPK 141 (211)
Q Consensus 80 ~~~~vVItVPa~f~~~qR~al~~Aa~~aGl~~~~lv~EP~A-AAl~y~~~~~~~-----~~~------------~vLV~D 141 (211)
.+.++|++.|+.=+. --..++-||+.+|++.+..+--..| |||+||-..-.+ .+. .++-+|
T Consensus 146 Gv~~Iv~~tPp~~~g-v~p~iL~AA~~~Gv~eIy~vGGAQAIAAlAYGTetV~~VdkIvGPGN~yVtaAKr~v~g~V~ID 224 (425)
T COG0141 146 GVEEIVVVTPPPKDG-VNPEILAAARLAGVDEVYKVGGAQAIAALAYGTETVPKVDKIVGPGNAYVTAAKRLVSGVVGID 224 (425)
T ss_pred CCceEEEECCCCCCC-CCHHHHHHHHHhCcHHHHHccCHHHHHHHHccCCcCCccCeeeCCCcHHHHHHHHHhhCCcccC
Confidence 488899999987544 5678899999999998888887777 678898433211 111 245577
Q ss_pred cCCCceEEEEEe
Q psy471 142 MLEPLLVLTLRK 153 (211)
Q Consensus 142 ~GggT~Dvsv~~ 153 (211)
|=+|=+.+-|+.
T Consensus 225 ~~AGPSEvlViA 236 (425)
T COG0141 225 MIAGPSEVLVIA 236 (425)
T ss_pred CCCCCceEEEEe
Confidence 777777777764
No 102
>PF03066 Nucleoplasmin: Nucleoplasmin; InterPro: IPR004301 The nucleophosmin/nucleoplasmin family of chaperones includes nucleophosmin, nucleoplasmin and nucleoplasmin-like proteins. They function as nuclear chaperones which are needed for the proper assembly of nucleosomes and the attainment of proper higher order chromatin structures [].; GO: 0003676 nucleic acid binding; PDB: 2P1B_E 1XB9_I 1XE0_C 1NLQ_A 2VTX_E 1K5J_D 1EJY_N 1EE5_B 3T30_J.
Probab=49.11 E-value=22 Score=28.57 Aligned_cols=21 Identities=5% Similarity=-0.286 Sum_probs=11.9
Q ss_pred eEEEeecCCCceEEEEEeccc
Q psy471 136 NVKLPKMLEPLLVLTLRKKKK 156 (211)
Q Consensus 136 ~vLV~D~GggT~Dvsv~~~~~ 156 (211)
..+-+-.|.|..-+|=..+..
T Consensus 88 Vtf~L~~GsGPVhisG~~~~~ 108 (149)
T PF03066_consen 88 VTFRLKCGSGPVHISGQHLVA 108 (149)
T ss_dssp EEEEEEESSS-EEEEEEEEEE
T ss_pred EEEEEEecCCCEEeeCccccc
Confidence 333345788887777666433
No 103
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=48.74 E-value=6 Score=30.04 Aligned_cols=59 Identities=19% Similarity=0.233 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHhhccccceeeEccCCCccHHHHHHHHHHHHHhC---CceeE---------Eeech-hHHHHH
Q psy471 62 LFQLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAG---LNVMR---------IVNEP-TAAALA 124 (211)
Q Consensus 62 ~a~iL~~L~~~a~~~~g~~~~~vVItVPa~f~~~qR~al~~Aa~~aG---l~~~~---------lv~EP-~AAAl~ 124 (211)
++..|+.-...|++..+.++.++.++++ ....+-+.++++.++ +.+.. ++..| .|+|++
T Consensus 48 i~~~i~~a~~~AE~~~k~~i~~v~v~~g----~s~l~~i~~~~~~~~~~~v~v~~~~~~~~~~~~~~~p~~Asa~g 119 (120)
T PF14450_consen 48 ISKAIKIAIEEAERLAKCEIGSVYVSIG----GSKLQNIEELIEKCGGMPVRVAGPNIVEGLPEIVLNPEYASAIG 119 (120)
T ss_dssp HHHHHT--HHHHHHH-HHHH--S--TTG----GGGSTTHHHHHHHHHTS-EEE--GGGSET-HHHHT-GGGHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCeeeEEEecCc----hhHHHhHHHHHHHhCCCcEEEccccccCcchhhccCceeeEEEe
Confidence 4566777777788777878888888774 555555666666666 66666 77888 888765
No 104
>PRK13311 N-acetyl-D-glucosamine kinase; Provisional
Probab=48.38 E-value=95 Score=26.34 Aligned_cols=39 Identities=21% Similarity=0.119 Sum_probs=27.2
Q ss_pred HhCCceeEEeechhHHHHHcccccCCCCCceEEEeecCCC
Q psy471 106 IAGLNVMRIVNEPTAAALAYGLDKNLKGERNVKLPKMLEP 145 (211)
Q Consensus 106 ~aGl~~~~lv~EP~AAAl~y~~~~~~~~~~~vLV~D~Ggg 145 (211)
..++++ .+.|+..|+|++..+.......++++.+-+|.|
T Consensus 95 ~~~~pV-~leNDanaaAlaE~~~g~~~~~~~~v~i~lgtG 133 (256)
T PRK13311 95 LIQREV-RIDNDANCFALSEAWDPEFRTYPTVLGLILGTG 133 (256)
T ss_pred HHCCCE-EEEchhhHHHHHHHHhcCCCCCCcEEEEEECcC
Confidence 347664 499999999998766544345667777777644
No 105
>PTZ00415 transmission-blocking target antigen s230; Provisional
Probab=47.95 E-value=7.2 Score=42.65 Aligned_cols=15 Identities=40% Similarity=0.554 Sum_probs=7.5
Q ss_pred CCCcccCCCCcchhh
Q psy471 183 GGGEEEGGGEEEEEE 197 (211)
Q Consensus 183 ~~~~~~~~~~~~~~~ 197 (211)
++++++++|+++-+|
T Consensus 185 de~~~~~~ge~~~~~ 199 (2849)
T PTZ00415 185 DEDEEDEGGEDFTYE 199 (2849)
T ss_pred chhccCCCCcccccc
Confidence 344455555555444
No 106
>COG4819 EutA Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition [Amino acid transport and metabolism]
Probab=47.66 E-value=26 Score=32.43 Aligned_cols=89 Identities=16% Similarity=-0.018 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHhhccccc-----eeeEccCCCccHHHHHHHHHHHHHhCCceeE--------EeechhHHHHHcccc
Q psy471 62 LFQLLTKMKETAEAYLGHSVR-----DAVITVPAYFNDAQRQATKDAGAIAGLNVMR--------IVNEPTAAALAYGLD 128 (211)
Q Consensus 62 ~a~iL~~L~~~a~~~~g~~~~-----~vVItVPa~f~~~qR~al~~Aa~~aGl~~~~--------lv~EP~AAAl~y~~~ 128 (211)
-..-|+++...-.+..|..+. -+.||=-..=....|.++.....++|-=++. +|----|.|.+|.-
T Consensus 63 d~~alk~~v~eeY~~AGi~pesi~sGAvIITGEtArk~NA~~vl~alSg~aGDFVVAtAGPdLESiIAGkGaGA~t~Se- 141 (473)
T COG4819 63 DEAALKKLVLEEYQAAGIAPESIDSGAVIITGETARKRNARPVLMALSGSAGDFVVATAGPDLESIIAGKGAGAQTLSE- 141 (473)
T ss_pred cHHHHHHHHHHHHHHcCCChhccccccEEEeccccccccchHHHHHhhhcccceEEEecCCCHHHHhccCCccccchhh-
Confidence 344455555554444553322 2455555545566666776666666642322 12222222222221
Q ss_pred cCCCCCceEEEeecCCCceEEEEEec
Q psy471 129 KNLKGERNVKLPKMLEPLLVLTLRKK 154 (211)
Q Consensus 129 ~~~~~~~~vLV~D~GggT~Dvsv~~~ 154 (211)
+..-.|+=+|+||||+..|++-.
T Consensus 142 ---qr~t~v~NlDIGGGTtN~slFD~ 164 (473)
T COG4819 142 ---QRLTRVLNLDIGGGTTNYSLFDA 164 (473)
T ss_pred ---hhceEEEEEeccCCccceeeecc
Confidence 23456788999999999999753
No 107
>PRK09698 D-allose kinase; Provisional
Probab=47.65 E-value=1.1e+02 Score=26.47 Aligned_cols=38 Identities=8% Similarity=-0.155 Sum_probs=24.7
Q ss_pred HhCCceeEEeechhHHHHHcccccCCCCCceEEEeecCCC
Q psy471 106 IAGLNVMRIVNEPTAAALAYGLDKNLKGERNVKLPKMLEP 145 (211)
Q Consensus 106 ~aGl~~~~lv~EP~AAAl~y~~~~~~~~~~~vLV~D~Ggg 145 (211)
..|++ +.+.|+..|+|++-.+... ...++++.+.+|.|
T Consensus 103 ~~~~p-v~v~NDa~aaa~~E~~~~~-~~~~~~~~v~lgtG 140 (302)
T PRK09698 103 TLNCP-VFFSRDVNLQLLWDVKENN-LTQQLVLGAYLGTG 140 (302)
T ss_pred HhCCC-EEEcchHhHHHHHHHHhcC-CCCceEEEEEecCc
Confidence 35775 5599999999886443322 23457777777755
No 108
>KOG1832|consensus
Probab=44.32 E-value=7.9 Score=39.84 Aligned_cols=10 Identities=10% Similarity=0.126 Sum_probs=5.0
Q ss_pred CCceEEEeec
Q psy471 133 GERNVKLPKM 142 (211)
Q Consensus 133 ~~~~vLV~D~ 142 (211)
...+..|+-+
T Consensus 1370 ~D~~l~vIe~ 1379 (1516)
T KOG1832|consen 1370 TDSFLGVIEM 1379 (1516)
T ss_pred ccceEEEEec
Confidence 3445555544
No 109
>PRK00292 glk glucokinase; Provisional
Probab=43.90 E-value=78 Score=27.75 Aligned_cols=42 Identities=21% Similarity=0.075 Sum_probs=28.0
Q ss_pred HHhCCceeEEeechhHHHHHcccc---------cCCC-CCceEEEeecCCCc
Q psy471 105 AIAGLNVMRIVNEPTAAALAYGLD---------KNLK-GERNVKLPKMLEPL 146 (211)
Q Consensus 105 ~~aGl~~~~lv~EP~AAAl~y~~~---------~~~~-~~~~vLV~D~GggT 146 (211)
+..|++.+.+.|+-.|+|++-.+. .... ..++++++-+|.|-
T Consensus 88 ~~~~~p~v~l~ND~~aaalgE~~~~~~~~~~~g~~~~~~~~~~~~v~~GTGi 139 (316)
T PRK00292 88 QELGLDHLLLINDFTAQALAIPRLGEEDLVQIGGGEPVPGAPIAVIGPGTGL 139 (316)
T ss_pred HHhCCCeEEEEecHHHHHcccccCCHhheeEeCCCCCCCCCcEEEEEcCCcc
Confidence 445887677999999999985431 1111 13677888887654
No 110
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=42.87 E-value=78 Score=26.86 Aligned_cols=36 Identities=11% Similarity=-0.081 Sum_probs=25.3
Q ss_pred EeechhHHHHHcccccCCCCCceEEEeecCCCceEEEEEe
Q psy471 114 IVNEPTAAALAYGLDKNLKGERNVKLPKMLEPLLVLTLRK 153 (211)
Q Consensus 114 lv~EP~AAAl~y~~~~~~~~~~~vLV~D~GggT~Dvsv~~ 153 (211)
.++|.+|-+.+..+..+ ..+ .|+|+||..+-+.+++
T Consensus 74 ~~~ei~~~~~g~~~~~~--~~~--~vidiGgqd~k~i~~~ 109 (248)
T TIGR00241 74 IVTEISCHGKGANYLAP--EAR--GVIDIGGQDSKVIKID 109 (248)
T ss_pred ceEEhhHHHHHHHHHCC--CCC--EEEEecCCeeEEEEEC
Confidence 67788877665444333 222 5999999999988886
No 111
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=42.45 E-value=17 Score=34.56 Aligned_cols=59 Identities=19% Similarity=0.083 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHH-----HhCCce------eEEeechhHHHHHcccccC-C---CCCceEEEeecCCCceEEEEE
Q psy471 94 DAQRQATKDAGA-----IAGLNV------MRIVNEPTAAALAYGLDKN-L---KGERNVKLPKMLEPLLVLTLR 152 (211)
Q Consensus 94 ~~qR~al~~Aa~-----~aGl~~------~~lv~EP~AAAl~y~~~~~-~---~~~~~vLV~D~GggT~Dvsv~ 152 (211)
...|++|++... .-|++. ..+++=|.|+....-+-.. . ...+.+|++|+||-|||+--+
T Consensus 193 epaR~~I~~vF~~~Iv~akGl~~i~~~~~~~i~PTP~AV~~a~~~la~~~~~~~g~g~ll~VDIGGATTDvhSv 266 (463)
T TIGR01319 193 EAAREAICDIFLKKIVEAKGLDNAEDFIGEELMPTPAAVFEAAKAIAEGTDKDDGIGDFILIDIGGATTDVHSA 266 (463)
T ss_pred hHHHHHHHHHHHHHHhcCCCHHHHHHHhCCcccCCHHHHHHHHHHHHhccccccCcCCEEEEEcCccccchhhc
Confidence 466777666632 224432 2345555554433222111 0 122469999999999998644
No 112
>COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=41.77 E-value=47 Score=29.68 Aligned_cols=21 Identities=14% Similarity=-0.104 Sum_probs=16.9
Q ss_pred CCceEEEeecCCCceEEEEEe
Q psy471 133 GERNVKLPKMLEPLLVLTLRK 153 (211)
Q Consensus 133 ~~~~vLV~D~GggT~Dvsv~~ 153 (211)
..++.+++|||..|+|+-=+.
T Consensus 128 ~~dsci~VD~GSTTtDIIPi~ 148 (330)
T COG1548 128 IKDSCILVDMGSTTTDIIPIK 148 (330)
T ss_pred cCCceEEEecCCcccceEeec
Confidence 456688999999999986554
No 113
>PLN02914 hexokinase
Probab=41.27 E-value=47 Score=31.82 Aligned_cols=95 Identities=11% Similarity=0.008 Sum_probs=0.0
Q ss_pred CCchHHHHHHHHHHHHHHHhhccccceeeEccCCCccHHHHHHHHHHHHHhCC--ceeEEeechhHHHHHcccccCCC-C
Q psy471 57 HHSPRLFQLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGL--NVMRIVNEPTAAALAYGLDKNLK-G 133 (211)
Q Consensus 57 ~~~~~~a~iL~~L~~~a~~~~g~~~~~vVItVPa~f~~~qR~al~~Aa~~aGl--~~~~lv~EP~AAAl~y~~~~~~~-~ 133 (211)
++-|+..+-++.-...+...+..-...+.++.+.-..-.++-.-.--.-.++- ..+.+++ +|....+.. .
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~L~~i~~~f~~em~~GL~~~~~s~l~Mlp-------Tyv~~lPtG~E 93 (490)
T PLN02914 21 RRRPRSRMAVRSNAVSVAPILTKLQKDCATPLPVLRHVADAMAADMRAGLAVDGGGDLKMIL-------SYVDSLPSGNE 93 (490)
T ss_pred ccCccHHHHHHHhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhccCCCCCcceec-------cccCCCCCCCe
Q ss_pred CceEEEeecCCCceEEEEEeccchh
Q psy471 134 ERNVKLPKMLEPLLVLTLRKKKKKK 158 (211)
Q Consensus 134 ~~~vLV~D~GggT~Dvsv~~~~~~~ 158 (211)
...+|.+||||.+|=|.++++.+++
T Consensus 94 ~G~fLAlDlGGTNfRV~~V~L~g~~ 118 (490)
T PLN02914 94 KGLFYALDLGGTNFRVLRVQLGGKD 118 (490)
T ss_pred eeEEEEEecCCceEEEEEEEecCCC
No 114
>COG0100 RpsK Ribosomal protein S11 [Translation, ribosomal structure and biogenesis]
Probab=40.94 E-value=1.1e+02 Score=24.24 Aligned_cols=56 Identities=25% Similarity=0.265 Sum_probs=38.5
Q ss_pred CCchHHHHHHHHHHHHHHHhhccccceeeEccCCCccHHHHHHHHHHHHHhCCceeEEee
Q psy471 57 HHSPRLFQLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVN 116 (211)
Q Consensus 57 ~~~~~~a~iL~~L~~~a~~~~g~~~~~vVItVPa~f~~~qR~al~~Aa~~aGl~~~~lv~ 116 (211)
.-+|+++++..........-.|...-+++|-=| ...|++-.+|...+|+.+.+|.+
T Consensus 57 k~tpyAA~~aa~~aa~~a~e~Gi~~v~v~vkgp----G~GreaAiraL~~ag~~i~~I~D 112 (129)
T COG0100 57 KSTPYAAQLAAEDAAKKAKEHGIKSVEVKVKGP----GPGREAAIRALAAAGLKITRIED 112 (129)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCccEEEEEEECC----CCcHHHHHHHHHHccceEEEEEE
Confidence 446777777766655544445655556666655 66777777888899999987765
No 115
>PLN02926 histidinol dehydrogenase
Probab=40.72 E-value=55 Score=30.92 Aligned_cols=74 Identities=19% Similarity=0.157 Sum_probs=50.5
Q ss_pred ccceeeEccCCCccHHHHHHHHHHHHHhCCceeEEeechhH-HHHHcccccCCC-----CCc------------eE---E
Q psy471 80 SVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTA-AALAYGLDKNLK-----GER------------NV---K 138 (211)
Q Consensus 80 ~~~~vVItVPa~f~~~qR~al~~Aa~~aGl~~~~lv~EP~A-AAl~y~~~~~~~-----~~~------------~v---L 138 (211)
.+..+|+..|+.-+..---.++-||..+|++.+.-+--..| |||+||...-.+ .+. .. +
T Consensus 150 GV~~Iv~~TPp~~~g~i~p~iL~AA~~~Gv~eIy~vGGaQAIAAlAyGTetIp~VDkIvGPGN~yV~~AK~~v~G~~~~V 229 (431)
T PLN02926 150 GCKTVVLATPPRKDGSICPEVLYCAKKAGVTHILKAGGAQAIAAMAWGTDSCPKVDKIFGPGNQYVTAAKMILQNSEAMV 229 (431)
T ss_pred CCCeEEEEECCCcCCCCCHHHHHHHHHcCCCeeeccCCHHHHHHHHcCCCCCCCCCEEECCCcHHHHHHHHHhhCCCCcc
Confidence 37888998887421124567778999999999888888888 678898643221 111 12 4
Q ss_pred EeecCCCceEEEEEe
Q psy471 139 LPKMLEPLLVLTLRK 153 (211)
Q Consensus 139 V~D~GggT~Dvsv~~ 153 (211)
-+||=.|=+.+.|+.
T Consensus 230 gID~~AGPSEvlIiA 244 (431)
T PLN02926 230 SIDMPAGPSEVLVIA 244 (431)
T ss_pred ccCCCCCCceeEEEe
Confidence 467777777777764
No 116
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional
Probab=40.70 E-value=46 Score=32.55 Aligned_cols=22 Identities=32% Similarity=0.439 Sum_probs=18.2
Q ss_pred HHHHhCCceeEEeechhHHHHH
Q psy471 103 AGAIAGLNVMRIVNEPTAAALA 124 (211)
Q Consensus 103 Aa~~aGl~~~~lv~EP~AAAl~ 124 (211)
..+..|++++.++|+-.|+|++
T Consensus 101 l~~~~g~~~v~l~ND~~aaA~g 122 (638)
T PRK14101 101 TRRALGFDTLLVVNDFTALAMA 122 (638)
T ss_pred HHHHcCCCeEEEEchHHHHHcC
Confidence 3345688888999999999998
No 117
>PF02724 CDC45: CDC45-like protein; InterPro: IPR003874 CDC45 is an essential gene required for initiation of DNA replication in Saccharomyces cerevisiae (cell division control protein 45), forming a complex with MCM5/CDC46. Homologs of CDC45 have been identified in human [], mouse and the smut fungus, Melampsora spp., (tsd2 protein) among others.; GO: 0006270 DNA-dependent DNA replication initiation
Probab=40.31 E-value=2.4e+02 Score=27.78 Aligned_cols=33 Identities=9% Similarity=0.106 Sum_probs=15.6
Q ss_pred hCCceeEEeechhHHHHHcccccCCCCCceEEEee
Q psy471 107 AGLNVMRIVNEPTAAALAYGLDKNLKGERNVKLPK 141 (211)
Q Consensus 107 aGl~~~~lv~EP~AAAl~y~~~~~~~~~~~vLV~D 141 (211)
..++.+.+||--...-+.-.+.. .....|.|+|
T Consensus 50 ~~~~~vilIncGa~~dl~~~l~~--~~~~~iyViD 82 (622)
T PF02724_consen 50 EDIKSVILINCGATVDLEEFLEL--DEDVTIYVID 82 (622)
T ss_pred hhhceEEEEecCchhhHHHHhCC--CCceEEEEEe
Confidence 44556778885444333322221 1344555555
No 118
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=38.49 E-value=2e+02 Score=23.64 Aligned_cols=81 Identities=11% Similarity=0.062 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHhhccccceeeEccCCCccHHHHHHHHHHHHHhCCceeEEeechh-HHHHHcccccCCC--CCceEE
Q psy471 62 LFQLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPT-AAALAYGLDKNLK--GERNVK 138 (211)
Q Consensus 62 ~a~iL~~L~~~a~~~~g~~~~~vVItVPa~f~~~qR~al~~Aa~~aGl~~~~lv~EP~-AAAl~y~~~~~~~--~~~~vL 138 (211)
+..-+..|.+...++....+.=+.|| .--...++.+........+++.. ++.+|. +.+-.|+...... ..+..+
T Consensus 47 C~~el~~l~~~~~~f~~~g~~vigIS--~D~~~~~~a~~~~~~~~~~l~fp-llsD~~~~ia~~ygv~~~~~g~~~r~tf 123 (187)
T PRK10382 47 CPTELGDVADHYEELQKLGVDVYSVS--TDTHFTHKAWHSSSETIAKIKYA-MIGDPTGALTRNFDNMREDEGLADRATF 123 (187)
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEe--CCCHHHHHHHHHhhccccCCcee-EEEcCchHHHHHcCCCcccCCceeeEEE
Confidence 34445556666665544444434444 33334455554433233466544 555554 4556687643211 235666
Q ss_pred EeecCCC
Q psy471 139 LPKMLEP 145 (211)
Q Consensus 139 V~D~Ggg 145 (211)
|+|=.|-
T Consensus 124 IID~~G~ 130 (187)
T PRK10382 124 VVDPQGI 130 (187)
T ss_pred EECCCCE
Confidence 6775443
No 119
>KOG1154|consensus
Probab=37.16 E-value=62 Score=28.48 Aligned_cols=54 Identities=24% Similarity=0.369 Sum_probs=41.5
Q ss_pred HHHHHHHhhccccceeeEccCCCccHHHHHHHHHHHH-HhCCceeEEeechhHHH
Q psy471 69 MKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGA-IAGLNVMRIVNEPTAAA 122 (211)
Q Consensus 69 L~~~a~~~~g~~~~~vVItVPa~f~~~qR~al~~Aa~-~aGl~~~~lv~EP~AAA 122 (211)
+..+...+++.++..+.+|-|.+....||+-++.... +..++++.|||+.-|.+
T Consensus 103 lye~lF~Qy~~~iAQvLvT~~Di~d~~~r~Nl~~Ti~eLL~m~viPIvNeNDavs 157 (285)
T KOG1154|consen 103 LYETLFTQYGITIAQVLVTRNDILDEQQRKNLQNTISELLSMNVIPIVNENDAVS 157 (285)
T ss_pred HHHHHHHHhccchheeeecCcchhhHHHHHHHHHHHHHHHhCCceeeecCCCccC
Confidence 3344445667888899999999999999998887654 66889999998655543
No 120
>TIGR00370 conserved hypothetical protein TIGR00370.
Probab=36.65 E-value=11 Score=31.72 Aligned_cols=65 Identities=11% Similarity=0.172 Sum_probs=39.0
Q ss_pred eccccCCCchHHHHHHHHHHHHHHHhhccccceeeEccCCCccHHHHHHHHHHHHHhCCceeEEeechhH
Q psy471 51 FSPRCCHHSPRLFQLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTA 120 (211)
Q Consensus 51 ~speel~~~~~~a~iL~~L~~~a~~~~g~~~~~vVItVPa~f~~~qR~al~~Aa~~aGl~~~~lv~EP~A 120 (211)
|.|..+ ...+++.|++............-++.||.+|+...---|...|+..|+++-.+|.-.++
T Consensus 49 fdp~~~-----~~~l~~~l~~~~~~~~~~~~~~r~~~iPV~Y~~~~g~DL~~vA~~~gLs~eevi~~Hs~ 113 (202)
T TIGR00370 49 YDMYEV-----YKHLPQRLSSPWEEVKDYEVNRRIIEIPVCYGGEFGPDLEEVAKINQLSPEEVIDIHSN 113 (202)
T ss_pred ECchhh-----HHHHHHHHHHHHhhccccCCCCeEEEEeeEeCCCCCCCHHHHHHHhCcCHHHHHHHHhC
Confidence 555444 44455666554433222233445789999999765556777888888866544443333
No 121
>PF14238 DUF4340: Domain of unknown function (DUF4340)
Probab=36.45 E-value=1.2e+02 Score=24.08 Aligned_cols=59 Identities=22% Similarity=0.196 Sum_probs=39.0
Q ss_pred eeEccCCCccHHHHHHHHHHHHHhCCceeEEeechhHHHHHcccccCCCCCceEEEeecCCCc
Q psy471 84 AVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVKLPKMLEPL 146 (211)
Q Consensus 84 vVItVPa~f~~~qR~al~~Aa~~aGl~~~~lv~EP~AAAl~y~~~~~~~~~~~vLV~D~GggT 146 (211)
+.|+-|..|...+.+.-.-...+.++++.+++..-....-.||+..+ ...+.+..++|+
T Consensus 2 W~l~~~~~~pad~~~v~~ll~~l~~l~~~~~v~~~~~~l~~yGL~~p----~~~v~~~~~~~~ 60 (191)
T PF14238_consen 2 WQLTSPYNYPADQDKVNSLLEALSNLKAQRFVSEDPDDLAEYGLDDP----GVTVTLKDGDGE 60 (191)
T ss_pred CEECCCCCCCCCHHHHHHHHHHHhhCccceeccCCcchHHHcCCCCC----ceEEEEEeCCCc
Confidence 45667777776666655556667888999999833334447888754 555556555665
No 122
>smart00842 FtsA Cell division protein FtsA. FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains PUBMED:9352931.
Probab=36.25 E-value=27 Score=28.34 Aligned_cols=31 Identities=39% Similarity=0.321 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHhCCceeEEeechhHHHHH
Q psy471 94 DAQRQATKDAGAIAGLNVMRIVNEPTAAALA 124 (211)
Q Consensus 94 ~~qR~al~~Aa~~aGl~~~~lv~EP~AAAl~ 124 (211)
......+.++.+.+|+++..++.+|.|++.+
T Consensus 156 ~~~v~n~~~~v~~agl~v~~i~~~~~A~~~a 186 (187)
T smart00842 156 KSAIQNLEKCVERAGLEVDGIVLEPLASAEA 186 (187)
T ss_pred hHHHHHHHHHHHHcCCchhhEEehhhhhEec
Confidence 3566678888999999999999999998753
No 123
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=36.16 E-value=61 Score=29.72 Aligned_cols=58 Identities=21% Similarity=0.107 Sum_probs=38.3
Q ss_pred HHHHHHHHHhCCceeEEeechhHHHHHcccc-cCCC---CCceEEEeecCCCceEEEEEecc
Q psy471 98 QATKDAGAIAGLNVMRIVNEPTAAALAYGLD-KNLK---GERNVKLPKMLEPLLVLTLRKKK 155 (211)
Q Consensus 98 ~al~~Aa~~aGl~~~~lv~EP~AAAl~y~~~-~~~~---~~~~vLV~D~GggT~Dvsv~~~~ 155 (211)
....+|++.||+...-+==+..|.--+|.+. .+.. .--.++|+|+|+.++.++|+.-.
T Consensus 152 ~~ri~a~~~AGl~~~vlDV~~fAl~ra~~~~~~~~~~~~a~~~vav~~Igat~s~l~vi~~g 213 (354)
T COG4972 152 ESRIDAFELAGLEPKVLDVESFALLRAYRLLASQFGPEEAAMKVAVFDIGATSSELLVIQDG 213 (354)
T ss_pred HHHHHHHHHcCCCceEEehHHHHHHHHHHHHHHHhCCchhhhhheeeeecccceEEEEEECC
Confidence 4667889999998765544555555555421 2211 22236899999999999998643
No 124
>PRK13318 pantothenate kinase; Reviewed
Probab=35.85 E-value=1.8e+02 Score=24.79 Aligned_cols=14 Identities=0% Similarity=-0.159 Sum_probs=11.2
Q ss_pred ceEEEeecCCCceE
Q psy471 135 RNVKLPKMLEPLLV 148 (211)
Q Consensus 135 ~~vLV~D~GggT~D 148 (211)
+.++|+|+|.+++=
T Consensus 124 ~~~ivid~GTA~t~ 137 (258)
T PRK13318 124 GPLIVVDFGTATTF 137 (258)
T ss_pred CCEEEEEcCCceEE
Confidence 37999999988753
No 125
>PF06635 NolV: Nodulation protein NolV; InterPro: IPR010586 This family consists of several nodulation protein NolV sequences from different Rhizobium species []. The function of this family is unclear.; GO: 0009877 nodulation
Probab=34.97 E-value=39 Score=28.74 Aligned_cols=68 Identities=21% Similarity=0.230 Sum_probs=40.3
Q ss_pred eccccCCCchHHHHHHHHHHHHHHHhhccccceeeEccCCCccHHHHHHHHHHHHHhCCceeEEeechhHHHHHcccc
Q psy471 51 FSPRCCHHSPRLFQLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLD 128 (211)
Q Consensus 51 ~speel~~~~~~a~iL~~L~~~a~~~~g~~~~~vVItVPa~f~~~qR~al~~Aa~~aGl~~~~lv~EP~AAAl~y~~~ 128 (211)
|.+.++ +.+.+++........ ..++|.||+.=-+.-|+.+......-|...++|+.+|.-++-.+-+.
T Consensus 110 fd~~el--------l~r~vr~Al~~~~~~--~~v~l~V~P~~vd~l~~~la~~~~~~g~~~i~I~aDp~La~~~Cvle 177 (207)
T PF06635_consen 110 FDPDEL--------LVRAVRQALSQIRQG--AEVTLRVAPADVDMLRRELAALEGRPGRPKIRIVADPRLAAGQCVLE 177 (207)
T ss_pred CChHHH--------HHHHHHHHHHHHhcC--CeEEEEECHHHHHHHHHHHHhhhccCCCCceeeecCCCCCCCCeeee
Confidence 566555 444444444433332 35889998654445555554444445778899999998766444433
No 126
>PRK13660 hypothetical protein; Provisional
Probab=34.97 E-value=87 Score=26.00 Aligned_cols=85 Identities=14% Similarity=0.127 Sum_probs=47.8
Q ss_pred eccccCCCchHHHHHHHHHHHHHHHhhccccceeeEccC-----CCccHHHHHHHHHHHHHhCCceeEEeechh--HHHH
Q psy471 51 FSPRCCHHSPRLFQLLTKMKETAEAYLGHSVRDAVITVP-----AYFNDAQRQATKDAGAIAGLNVMRIVNEPT--AAAL 123 (211)
Q Consensus 51 ~speel~~~~~~a~iL~~L~~~a~~~~g~~~~~vVItVP-----a~f~~~qR~al~~Aa~~aGl~~~~lv~EP~--AAAl 123 (211)
++.-+++....++.++-.|+.. + +--.+.+.+| ..|+...|..+......|-+ +..+-+.|. ...+
T Consensus 47 i~ggalG~d~wAaEvvl~LK~~---y---p~lkL~~~~PF~~q~~~W~e~~q~~y~~i~~~aD~-v~~vs~~~y~~p~q~ 119 (182)
T PRK13660 47 IISGQLGVELWAAEVVLELKEE---Y---PDLKLAVITPFEEHGENWNEANQEKLANILKQADF-VKSISKRPYESPAQF 119 (182)
T ss_pred EECCcchHHHHHHHHHHHHHhh---C---CCeEEEEEeCccchhhcCCHHHHHHHHHHHHhCCE-EEEecCCCCCChHHH
Confidence 3444444444477777777765 1 3345566666 45899999998877766643 222434444 2222
Q ss_pred H-cccccCCCCCceEEEeec
Q psy471 124 A-YGLDKNLKGERNVKLPKM 142 (211)
Q Consensus 124 ~-y~~~~~~~~~~~vLV~D~ 142 (211)
. +.-..-......++|||-
T Consensus 120 ~~rn~fmv~~sd~~i~~YD~ 139 (182)
T PRK13660 120 RQYNQFMLEHTDGALLVYDE 139 (182)
T ss_pred HHHHHHHHHccCeEEEEEcC
Confidence 1 111111236778999994
No 127
>PRK09604 UGMP family protein; Validated
Probab=34.83 E-value=1.2e+02 Score=27.20 Aligned_cols=62 Identities=13% Similarity=-0.018 Sum_probs=30.3
Q ss_pred ccceeeEcc-CCCccHHHHHHHH--HHHHHhCCceeEEeechhHHHHHcccccCCCCCceEEEeec
Q psy471 80 SVRDAVITV-PAYFNDAQRQATK--DAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVKLPKM 142 (211)
Q Consensus 80 ~~~~vVItV-Pa~f~~~qR~al~--~Aa~~aGl~~~~lv~EP~AAAl~y~~~~~~~~~~~vLV~D~ 142 (211)
.++.+++|+ |..|+....-... .-+...+++++ -|+--.|-|++..+......+-.+|++|=
T Consensus 72 did~iavt~GPG~~tglrvg~~~Ak~La~~~~ipl~-~v~h~~~ha~~a~~~s~~~~~~lvl~vsG 136 (332)
T PRK09604 72 DIDAIAVTAGPGLVGALLVGVSFAKALALALNKPLI-GVNHLEGHLLAPFLEEEPEFPFLALLVSG 136 (332)
T ss_pred HCCEEEEecCCCcHHhHHHHHHHHHHHHHHhCCCEE-eecCHHHHHHhhhhccCCCCCEEEEEecC
Confidence 467788888 7777764333221 22233455433 44554444443222222222345677776
No 128
>PTZ00107 hexokinase; Provisional
Probab=34.65 E-value=40 Score=32.06 Aligned_cols=25 Identities=0% Similarity=-0.299 Sum_probs=22.2
Q ss_pred CCceEEEeecCCCceEEEEEeccch
Q psy471 133 GERNVKLPKMLEPLLVLTLRKKKKK 157 (211)
Q Consensus 133 ~~~~vLV~D~GggT~Dvsv~~~~~~ 157 (211)
....+|.+||||.+|=|.++++.+.
T Consensus 72 E~G~fLAlDlGGTN~RV~~V~L~g~ 96 (464)
T PTZ00107 72 EKGVYYAIDFGGTNFRAVRVSLRGG 96 (464)
T ss_pred ccceEEEEecCCceEEEEEEEeCCC
Confidence 4567999999999999999999875
No 129
>PRK13329 pantothenate kinase; Reviewed
Probab=33.91 E-value=2e+02 Score=24.86 Aligned_cols=14 Identities=7% Similarity=-0.040 Sum_probs=11.1
Q ss_pred CceEEEeecCCCce
Q psy471 134 ERNVKLPKMLEPLL 147 (211)
Q Consensus 134 ~~~vLV~D~GggT~ 147 (211)
++.++|+|+|.-+|
T Consensus 118 ~~~~lViD~GTA~T 131 (249)
T PRK13329 118 ARPCLVVMVGTAVT 131 (249)
T ss_pred CCCEEEEECCCcee
Confidence 56799999997654
No 130
>PRK13320 pantothenate kinase; Reviewed
Probab=33.62 E-value=1.2e+02 Score=25.99 Aligned_cols=14 Identities=14% Similarity=0.010 Sum_probs=11.2
Q ss_pred CceEEEeecCCCce
Q psy471 134 ERNVKLPKMLEPLL 147 (211)
Q Consensus 134 ~~~vLV~D~GggT~ 147 (211)
.+.++|+|+|..+|
T Consensus 113 ~~~~lVID~GTA~T 126 (244)
T PRK13320 113 GKNVLAIDAGTAIT 126 (244)
T ss_pred CCCEEEEEcCCceE
Confidence 35799999998765
No 131
>KOG1939|consensus
Probab=33.33 E-value=17 Score=37.08 Aligned_cols=40 Identities=10% Similarity=0.064 Sum_probs=27.9
Q ss_pred EeechhHHHHHcccccCC-CCCceEEEeecCCCceEEEEEe
Q psy471 114 IVNEPTAAALAYGLDKNL-KGERNVKLPKMLEPLLVLTLRK 153 (211)
Q Consensus 114 lv~EP~AAAl~y~~~~~~-~~~~~vLV~D~GggT~Dvsv~~ 153 (211)
|++-|.+..+.|+..... .+...++-|||||.+||||-+.
T Consensus 283 IlSGPAgGvVG~a~T~~~~~~~~P~IGFDMGGTSTDVsRY~ 323 (1247)
T KOG1939|consen 283 ILSGPAGGVVGYASTSYDAEDKKPLIGFDMGGTSTDVSRYD 323 (1247)
T ss_pred hhcCCCcceeeeeeeccccccCCceeeecCCCCccceeccC
Confidence 455666666667665332 2556677899999999998653
No 132
>PRK13434 F0F1 ATP synthase subunit delta; Provisional
Probab=33.08 E-value=2e+02 Score=23.33 Aligned_cols=73 Identities=10% Similarity=-0.027 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHhhccccceeeEccCCCccHHHHHHHHHHHH-HhCCceeEEee--chhHHHHHcccccCCCCCceEE
Q psy471 62 LFQLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGA-IAGLNVMRIVN--EPTAAALAYGLDKNLKGERNVK 138 (211)
Q Consensus 62 ~a~iL~~L~~~a~~~~g~~~~~vVItVPa~f~~~qR~al~~Aa~-~aGl~~~~lv~--EP~AAAl~y~~~~~~~~~~~vL 138 (211)
+..++..+........| ...+.|+.....++.|+..+..... ..|-+ +.+-. +|.- + .=+
T Consensus 87 l~~I~~~f~~l~~~~~~--~~~~~V~sA~~Ls~~q~~~l~~~L~k~~g~~-v~l~~~vDpsL--I------------GG~ 149 (184)
T PRK13434 87 LPEIQKDFTVELDKKKG--RVRAQIVSYPSLEPAQVDKLGSILSEKFKSE-FILEVSEDKNL--L------------GGF 149 (184)
T ss_pred HHHHHHHHHHHHHHHcC--eEEEEEEEcCCCCHHHHHHHHHHHHHHHCCE-eEEEeeeChHH--c------------Cce
Confidence 55566666666655544 3455566666678999999998874 55643 33322 2221 1 115
Q ss_pred EeecCCCceEEEE
Q psy471 139 LPKMLEPLLVLTL 151 (211)
Q Consensus 139 V~D~GggT~Dvsv 151 (211)
++.+|.-.+|.||
T Consensus 150 ii~igd~viD~Sv 162 (184)
T PRK13434 150 VVQFNDLKIEKSI 162 (184)
T ss_pred EEEECCEEEeHhH
Confidence 6677777777765
No 133
>cd07213 Pat17_PNPLA8_PNPLA9_like1 Patatin-like phospholipase. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta) like phospholipases from human as well as the Pat17 isozyme from Solanum cardiophyllum.
Probab=32.58 E-value=38 Score=29.58 Aligned_cols=38 Identities=13% Similarity=0.072 Sum_probs=28.4
Q ss_pred EeechhHHHHHcccc--cCCCCCceEEEeecCCCceEEEE
Q psy471 114 IVNEPTAAALAYGLD--KNLKGERNVKLPKMLEPLLVLTL 151 (211)
Q Consensus 114 lv~EP~AAAl~y~~~--~~~~~~~~vLV~D~GggT~Dvsv 151 (211)
+.|-|+..|+..++. ......+.++|+-+|.|+....+
T Consensus 174 ~~NnP~~~a~~~a~~~~~~~~~~~~i~vlSiGtG~~~~~~ 213 (288)
T cd07213 174 FANNPSLCAIAQAIGEEGLNIDLKDIVVLSLGTGRPPSYL 213 (288)
T ss_pred ecCChHHHHHHHHHhccccCCCcccEEEEEecCCCCCCCc
Confidence 567999999998765 22235678999999999876543
No 134
>PRK05758 F0F1 ATP synthase subunit delta; Validated
Probab=32.08 E-value=2.4e+02 Score=22.46 Aligned_cols=46 Identities=20% Similarity=0.141 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHhhccccceeeEccCCCccHHHHHHHHHHHH-HhCC
Q psy471 62 LFQLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGA-IAGL 109 (211)
Q Consensus 62 ~a~iL~~L~~~a~~~~g~~~~~vVItVPa~f~~~qR~al~~Aa~-~aGl 109 (211)
+..++..+........+ ...+.|+.+...++.++..+..... ..|-
T Consensus 89 l~~i~~~~~~~~~~~~~--~~~~~v~sa~~l~~~~~~~i~~~l~~~~~~ 135 (177)
T PRK05758 89 LPEILEQFEALRAEHEN--IVDAEVTSAFPLSEEQLDKLKAALEKRLGR 135 (177)
T ss_pred HHHHHHHHHHHHHHHcC--EEEEEEEEccCCCHHHHHHHHHHHHHHHCC
Confidence 55566666666655444 3456677777788888888887664 3343
No 135
>PF01424 R3H: R3H domain; InterPro: IPR001374 The R3H motif: a domain that binds single-stranded nucleic acids. The most prominent feature of the R3H motif is the presence of an invariant arginine residue and a highly conserved histidine residue that are separated by three residues. The motif also displays a conserved pattern of hydrophobic residues, prolines and glycines. The R3H motif is present in proteins from a diverse range of organisms that includes Eubacteria, green plants, fungi and various groups of metazoans. Intriguingly, it has not yet been identified in Archaea and Escherichia coli. The sequences that contain the R3H domain, many of which are hypothetical proteins predicted from genome sequencing projects, can be grouped into eight families on the basis of similarities outside the R3H region. Three of the families contain ATPase domains either upstream (families II and VII) or downstream of the R3H domain (family VIII). The N-terminal part of members of family VII contains an SF1 helicase domain5. The C-terminal part of family VIII contains an SF2 DEAH helicase domain5. The ATPase domain in the members of family II is similar to the stage-III sporulation protein AA (S3AA_BACSU), the proteasome ATPase, bacterial transcription-termination factor r and the mitochondrial F1-ATPase b subunit (the F5 helicase family5). Family VI contains Cys-rich repeats6, as well as a ring-type zinc finger upstream of the R3H domain. JAG bacterial proteins (family I) contain a KH domain N-terminal to the R3H domain. The functions of other domains in R3H proteins support the notion that the R3H domain might be involved in interactions with single-stranded nucleic acids [].; GO: 0003676 nucleic acid binding; PDB: 1WHR_A 1MSZ_A 1UG8_A 3GKU_B 2CPM_A.
Probab=31.69 E-value=1.5e+02 Score=19.39 Aligned_cols=27 Identities=19% Similarity=0.348 Sum_probs=21.0
Q ss_pred eEccCCCccHHHHHHHHHHHHHhCCcee
Q psy471 85 VITVPAYFNDAQRQATKDAGAIAGLNVM 112 (211)
Q Consensus 85 VItVPa~f~~~qR~al~~Aa~~aGl~~~ 112 (211)
.++.|+ .+..+|..+-..|...|+...
T Consensus 22 ~~~f~p-m~~~~R~~iH~~a~~~gL~s~ 48 (63)
T PF01424_consen 22 SLEFPP-MNSFERKLIHELAEYYGLKSK 48 (63)
T ss_dssp EEEEEC---SHHHHHHHHHHHHCTEEEE
T ss_pred EEEECC-CCHHHHHHHHHHHHHCCCEEE
Confidence 677777 899999999999998887654
No 136
>PRK12408 glucokinase; Provisional
Probab=31.52 E-value=1.7e+02 Score=26.15 Aligned_cols=42 Identities=21% Similarity=0.108 Sum_probs=27.5
Q ss_pred HHhCCceeEEeechhHHHHHccccc---------CCCCC-ceEEEeecCCCc
Q psy471 105 AIAGLNVMRIVNEPTAAALAYGLDK---------NLKGE-RNVKLPKMLEPL 146 (211)
Q Consensus 105 ~~aGl~~~~lv~EP~AAAl~y~~~~---------~~~~~-~~vLV~D~GggT 146 (211)
+..|++.+.++|+-.|+|++-.+.. ..+.. .+++++-+|.|-
T Consensus 106 ~~~~~~~V~l~ND~naaa~gE~~~~~~~~~~~~g~~~~~~~~~~~i~~GTGi 157 (336)
T PRK12408 106 AQLGLQAVHLVNDFEAVAYAAPYMEGNQVLQLSGPAQAAAGPALVLGPGTGL 157 (336)
T ss_pred HHcCCCeEEEeecHHHHHcccccCCHhHeeeecCCCCCCCCcEEEEECCCcc
Confidence 3468877889999999998854331 11122 567777776553
No 137
>PTZ00107 hexokinase; Provisional
Probab=30.88 E-value=1.4e+02 Score=28.41 Aligned_cols=61 Identities=10% Similarity=-0.024 Sum_probs=40.3
Q ss_pred ccHHHHHHHHHHHHHhCC--ceeEEeechhHHHHHcccccCCCCCceEEEeecCCCceEEEEE
Q psy471 92 FNDAQRQATKDAGAIAGL--NVMRIVNEPTAAALAYGLDKNLKGERNVKLPKMLEPLLVLTLR 152 (211)
Q Consensus 92 f~~~qR~al~~Aa~~aGl--~~~~lv~EP~AAAl~y~~~~~~~~~~~vLV~D~GggT~Dvsv~ 152 (211)
-...-.+.|.+|...-|+ +++.|||+.+|+.++.++......+...+-+=||.||--+-+.
T Consensus 192 ~G~DV~~lL~~Al~r~~l~v~v~AivNDTVgTL~a~ay~~~~~~~~~~iGlIlGTG~NacY~E 254 (464)
T PTZ00107 192 EGKDVGELLNDAFKRNNVPANVVAVLNDTVGTLISCAYQKPKNTPPCQVGVIIGTGSNACYFE 254 (464)
T ss_pred cCchHHHHHHHHHHHcCCCceEEEEEEcCHHHHHHHHhcCcCCCCCceEEEEEeccccceeee
Confidence 344567788888888776 5788999999999987776532223344334456666544444
No 138
>PRK13599 putative peroxiredoxin; Provisional
Probab=30.61 E-value=2.3e+02 Score=23.74 Aligned_cols=79 Identities=8% Similarity=-0.037 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHhhccccceeeEccCCCccHHHHHHHHHHHHH--hCCceeEEeech-hHHHHHcccccCCC---CCc
Q psy471 62 LFQLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAI--AGLNVMRIVNEP-TAAALAYGLDKNLK---GER 135 (211)
Q Consensus 62 ~a~iL~~L~~~a~~~~g~~~~~vVItVPa~f~~~qR~al~~Aa~~--aGl~~~~lv~EP-~AAAl~y~~~~~~~---~~~ 135 (211)
+..-+..+.+....+....+.=+.||+-.. ..++.+....... .+++.. ++.+| ...|-.|++..... ..+
T Consensus 44 Ct~El~~l~~~~~~f~~~gv~vigIS~D~~--~~~~~w~~~i~~~~~~~i~fP-il~D~~~~va~~yg~~~~~~~~~~~R 120 (215)
T PRK13599 44 CTTEFVEFARKANDFKELNTELIGLSVDQV--FSHIKWVEWIKDNTNIAIPFP-VIADDLGKVSNQLGMIHPGKGTNTVR 120 (215)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEeCCCH--HHHHHHHHhHHHhcCCCCcee-EEECCCchHHHHcCCCccCCCCceee
Confidence 444555666776666554555566665543 2344444433332 344544 55555 45666777643211 235
Q ss_pred eEEEeecC
Q psy471 136 NVKLPKML 143 (211)
Q Consensus 136 ~vLV~D~G 143 (211)
.+.|+|=.
T Consensus 121 ~tfIID~d 128 (215)
T PRK13599 121 AVFIVDDK 128 (215)
T ss_pred EEEEECCC
Confidence 56666643
No 139
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type. This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).
Probab=30.48 E-value=2.7e+02 Score=24.68 Aligned_cols=74 Identities=19% Similarity=0.077 Sum_probs=52.8
Q ss_pred eeeccccCCCchHHHHHHHHHHHH----HHHh-hccccceeeE-ccCCCccHHHHHHHHHHHHHhCCceeEEeechhHHH
Q psy471 49 KSFSPRCCHHSPRLFQLLTKMKET----AEAY-LGHSVRDAVI-TVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAA 122 (211)
Q Consensus 49 k~~speel~~~~~~a~iL~~L~~~----a~~~-~g~~~~~vVI-tVPa~f~~~qR~al~~Aa~~aGl~~~~lv~EP~AAA 122 (211)
..+++++| ++-+|.-+... |.-. ......++++ .-|-.+++.-|+.+..+....+++.+-+-++..+.|
T Consensus 199 ~~~~~eDi-----AaSLl~mV~~nIg~lA~~~a~~~~~~~IvF~Gg~L~~~~~l~~~~~~~~~~~~~~~ifp~h~~y~gA 273 (279)
T TIGR00555 199 QSFSPEDI-----AASLLGLIGNNIGQIAYLCALRYNIDRIVFIGSFLRNNQLLMKVLSYATNFWSKKALFLEHEGYSGA 273 (279)
T ss_pred cCCCHHHH-----HHHHHHHHHHHHHHHHHHHHHHcCCCeEEEECCcccCCHHHHHHHHHHHhhcCceEEEECCcchHHH
Confidence 34677777 66555554443 3311 1223556654 489999999999999999999988888888999888
Q ss_pred HHccc
Q psy471 123 LAYGL 127 (211)
Q Consensus 123 l~y~~ 127 (211)
+...+
T Consensus 274 lGAaL 278 (279)
T TIGR00555 274 IGALL 278 (279)
T ss_pred hhhcc
Confidence 87654
No 140
>KOG0681|consensus
Probab=30.04 E-value=3.4e+02 Score=26.74 Aligned_cols=85 Identities=8% Similarity=-0.019 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHhhccc----cceeeEccCCCccHHHHHHHHHH-HHHhCCceeEEeechhHHHHHcccccCCCCCceEEE
Q psy471 65 LLTKMKETAEAYLGHS----VRDAVITVPAYFNDAQRQATKDA-GAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVKL 139 (211)
Q Consensus 65 iL~~L~~~a~~~~g~~----~~~vVItVPa~f~~~qR~al~~A-a~~aGl~~~~lv~EP~AAAl~y~~~~~~~~~~~vLV 139 (211)
++.++.+.+-.++|.. ...+++|=+.+-...+|.-+.+. ...-|++.+.+= .-+.+++.+.........-||
T Consensus 96 l~E~ilDY~F~~LG~~~~~idhPIilTE~laNP~~~R~~m~elLFE~YgvP~V~yG---IDslfS~~hN~~~~~~~~~li 172 (645)
T KOG0681|consen 96 LMEQILDYIFGKLGVDGQGIDHPIILTEALANPVYSRSEMVELLFETYGVPKVAYG---IDSLFSFYHNYGKSSNKSGLI 172 (645)
T ss_pred HHHHHHHHHHHhcCCCccCCCCCeeeehhccChHHHHHHHHHHHHHHcCCcceeec---hhhHHHHhhccCcccCcceEE
Confidence 4555555555566633 23577777776666677666554 456687665431 112334444333334557899
Q ss_pred eecCCCceEEEEE
Q psy471 140 PKMLEPLLVLTLR 152 (211)
Q Consensus 140 ~D~GggT~Dvsv~ 152 (211)
++||..+|-|-.+
T Consensus 173 is~g~~~T~vipv 185 (645)
T KOG0681|consen 173 ISMGHSATHVIPV 185 (645)
T ss_pred EecCCCcceeEEE
Confidence 9999998887655
No 141
>KOG0127|consensus
Probab=29.75 E-value=59 Score=31.77 Aligned_cols=11 Identities=9% Similarity=0.456 Sum_probs=5.0
Q ss_pred HhCCceeEEee
Q psy471 106 IAGLNVMRIVN 116 (211)
Q Consensus 106 ~aGl~~~~lv~ 116 (211)
++||-.+.+..
T Consensus 157 lcGFaFV~fk~ 167 (678)
T KOG0127|consen 157 LCGFAFVQFKE 167 (678)
T ss_pred ccceEEEEEee
Confidence 34555554443
No 142
>PF11705 RNA_pol_3_Rpc31: DNA-directed RNA polymerase III subunit Rpc31; InterPro: IPR024661 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. RNA polymerase III contains seventeen subunits in yeasts and in human cells. Twelve of these are akin to RNA polymerase I or II and the other five are RNA polymerase III-specific, and form the functionally distinct groups: (i) Rpc31-Rpc34-Rpc82, and (ii) Rpc37-Rpc53. Rpc31, Rpc34 and Rpc82 form a cluster of enzyme-specific subunits that contribute to transcription initiation in Saccharomyces cerevisiae and Homo sapiens. There is evidence that these subunits are anchored at or near the N-terminal Zn-fold of Rpc1, itself prolonged by a highly conserved but RNA polymerase III-specific domain []. This entry represents the Rpc31 subunit.
Probab=29.09 E-value=21 Score=30.39 Aligned_cols=6 Identities=50% Similarity=1.082 Sum_probs=2.5
Q ss_pred ccHHHH
Q psy471 92 FNDAQR 97 (211)
Q Consensus 92 f~~~qR 97 (211)
+....|
T Consensus 90 ~~~ier 95 (233)
T PF11705_consen 90 FDDIER 95 (233)
T ss_pred cccHHH
Confidence 344444
No 143
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=28.51 E-value=2.6e+02 Score=22.94 Aligned_cols=79 Identities=14% Similarity=0.091 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHhhccccceeeEccCCCccHHHHHHHHHHHHH--hCCceeEEeechh-HHHHHcccccCC----CCC
Q psy471 62 LFQLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAI--AGLNVMRIVNEPT-AAALAYGLDKNL----KGE 134 (211)
Q Consensus 62 ~a~iL~~L~~~a~~~~g~~~~~vVItVPa~f~~~qR~al~~Aa~~--aGl~~~~lv~EP~-AAAl~y~~~~~~----~~~ 134 (211)
+..-+..|.+.+..+....+.=+.||+-.. ..++.++...... .+++.. ++.+|. ..+-.|++.... ...
T Consensus 41 C~~el~~l~~~~~~f~~~gv~vigvS~D~~--~~~~~~~~~i~~~~~~~~~fp-il~D~~~~ia~~yg~~~~~~~~~~~~ 117 (203)
T cd03016 41 CTTELGAFAKLAPEFKKRNVKLIGLSVDSV--ESHIKWIEDIEEYTGVEIPFP-IIADPDREVAKLLGMIDPDAGSTLTV 117 (203)
T ss_pred CHHHHHHHHHHHHHHHHcCCEEEEEECCCH--HHHHHHHhhHHHhcCCCCcee-EEECchHHHHHHcCCccccCCCCcee
Confidence 555567777777666554555455555532 3444455444333 355544 666665 455668765431 112
Q ss_pred ceEEEeecC
Q psy471 135 RNVKLPKML 143 (211)
Q Consensus 135 ~~vLV~D~G 143 (211)
+.+.|+|=.
T Consensus 118 r~~fiID~~ 126 (203)
T cd03016 118 RAVFIIDPD 126 (203)
T ss_pred eEEEEECCC
Confidence 345666644
No 144
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=28.48 E-value=2.9e+02 Score=21.57 Aligned_cols=82 Identities=17% Similarity=0.167 Sum_probs=44.4
Q ss_pred CchHHHHHHHHHHHHHHHhhccccceeeEccCCCc--cHHHHHHHHHHHHHhCCceeEEeechhHHHHHcccccCCCCCc
Q psy471 58 HSPRLFQLLTKMKETAEAYLGHSVRDAVITVPAYF--NDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGER 135 (211)
Q Consensus 58 ~~~~~a~iL~~L~~~a~~~~g~~~~~vVItVPa~f--~~~qR~al~~Aa~~aGl~~~~lv~EP~AAAl~y~~~~~~~~~~ 135 (211)
.||.+...+..|.+....+....+.-+.|++.... .......+++.+...+++...+.+.....+-.|++... .
T Consensus 36 ~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~v~~~----P 111 (171)
T cd02969 36 HCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEVAKAYGAACT----P 111 (171)
T ss_pred CCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHHHHHcCCCcC----C
Confidence 45667777788887776665444544555543221 11234555665666777755555544445555665432 2
Q ss_pred eEEEeecC
Q psy471 136 NVKLPKML 143 (211)
Q Consensus 136 ~vLV~D~G 143 (211)
.++|+|=.
T Consensus 112 ~~~lid~~ 119 (171)
T cd02969 112 DFFLFDPD 119 (171)
T ss_pred cEEEECCC
Confidence 34555543
No 145
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=28.48 E-value=52 Score=28.60 Aligned_cols=38 Identities=29% Similarity=0.261 Sum_probs=24.9
Q ss_pred eEccCCCccHHHHHHHHHHHHHhCCceeEEeechhHHH
Q psy471 85 VITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAA 122 (211)
Q Consensus 85 VItVPa~f~~~qR~al~~Aa~~aGl~~~~lv~EP~AAA 122 (211)
.=+.|+..+.-|++.+.-|-..|--+.+-|.+|||+|.
T Consensus 130 a~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSAL 167 (240)
T COG1126 130 ADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSAL 167 (240)
T ss_pred hhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccC
Confidence 44567777765555444443345557788999999875
No 146
>PLN02362 hexokinase
Probab=28.39 E-value=57 Score=31.42 Aligned_cols=25 Identities=0% Similarity=-0.223 Sum_probs=0.0
Q ss_pred CceEEEeecCCCceEEEEEeccchh
Q psy471 134 ERNVKLPKMLEPLLVLTLRKKKKKK 158 (211)
Q Consensus 134 ~~~vLV~D~GggT~Dvsv~~~~~~~ 158 (211)
...+|.+||||.+|=|.++++.+++
T Consensus 94 ~G~fLAlDlGGTNfRV~~V~L~g~~ 118 (509)
T PLN02362 94 IGTYYALDLGGTNFRVLRVQLGGQR 118 (509)
T ss_pred ceeEEEEecCCceEEEEEEEecCCC
No 147
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=28.16 E-value=81 Score=23.42 Aligned_cols=31 Identities=19% Similarity=0.249 Sum_probs=24.4
Q ss_pred CCccHHHHHHHHHHHHHhCCceeEEeechhH
Q psy471 90 AYFNDAQRQATKDAGAIAGLNVMRIVNEPTA 120 (211)
Q Consensus 90 a~f~~~qR~al~~Aa~~aGl~~~~lv~EP~A 120 (211)
..++.-||+.+.=|...+.-..+-|++||+|
T Consensus 107 ~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 107 SSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp GGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred chhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 5677888887777777777777889999986
No 148
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=28.02 E-value=1.7e+02 Score=25.40 Aligned_cols=55 Identities=15% Similarity=0.173 Sum_probs=33.1
Q ss_pred HHHHHHHHHhhccccceeeEccCCCccHHHH---HHHHHHHHHhCCceeEEeechhHHH
Q psy471 67 TKMKETAEAYLGHSVRDAVITVPAYFNDAQR---QATKDAGAIAGLNVMRIVNEPTAAA 122 (211)
Q Consensus 67 ~~L~~~a~~~~g~~~~~vVItVPa~f~~~qR---~al~~Aa~~aGl~~~~lv~EP~AAA 122 (211)
+.....++.......+.+++.-|.||...+. ..++..+..++++++ +.|-|....
T Consensus 80 ~~~i~~a~~a~~~Gad~v~v~pP~y~~~~~~~i~~~~~~i~~~~~~pi~-lYn~P~~tg 137 (285)
T TIGR00674 80 EEAISLTKFAEDVGADGFLVVTPYYNKPTQEGLYQHFKAIAEEVDLPII-LYNVPSRTG 137 (285)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCcCCCCCHHHHHHHHHHHHhcCCCCEE-EEECcHHhc
Confidence 3344444433344567788877888764333 345566666777765 888886543
No 149
>PF03610 EIIA-man: PTS system fructose IIA component; InterPro: IPR004701 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for IIA and IIB components.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane; PDB: 3GDW_B 2JZN_A 1VSQ_A 2JZO_B 1VRC_A 1PDO_A 3GX1_A 3B48_B 3BED_B 3IPR_C ....
Probab=28.01 E-value=2.5e+02 Score=20.70 Aligned_cols=15 Identities=13% Similarity=0.047 Sum_probs=9.2
Q ss_pred CCceEEEeecCCCce
Q psy471 133 GERNVKLPKMLEPLL 147 (211)
Q Consensus 133 ~~~~vLV~D~GggT~ 147 (211)
....++++|++|||.
T Consensus 57 ~~~vlil~Dl~ggsp 71 (116)
T PF03610_consen 57 GDGVLILTDLGGGSP 71 (116)
T ss_dssp TSEEEEEESSTTSHH
T ss_pred CCcEEEEeeCCCCcc
Confidence 345556677777763
No 150
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=27.33 E-value=78 Score=29.44 Aligned_cols=83 Identities=16% Similarity=0.101 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHhhccccceeeEccCCCccHHHHHHHHHHHH-HhCCceeEEeechhHHHHHcccccCCCCCceEEEe
Q psy471 62 LFQLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGA-IAGLNVMRIVNEPTAAALAYGLDKNLKGERNVKLP 140 (211)
Q Consensus 62 ~a~iL~~L~~~a~~~~g~~~~~vVItVPa~f~~~qR~al~~Aa~-~aGl~~~~lv~EP~AAAl~y~~~~~~~~~~~vLV~ 140 (211)
-+.++.....++....+-+...++||=| +....||+.++..|. +-+++++++-++++.-.-+. =+|+
T Consensus 232 G~eLi~~~l~A~~~l~~l~~~~~ivtGP-~MP~~~r~~l~~~A~~~p~i~I~~f~~~~~~ll~gA-----------~~vV 299 (400)
T COG4671 232 GAELIETALAAAQLLAGLNHKWLIVTGP-FMPEAQRQKLLASAPKRPHISIFEFRNDFESLLAGA-----------RLVV 299 (400)
T ss_pred hHHHHHHHHHHhhhCCCCCcceEEEeCC-CCCHHHHHHHHHhcccCCCeEEEEhhhhHHHHHHhh-----------heee
Confidence 4555555555554433433345666665 678899998887764 55778888888887432211 1567
Q ss_pred ecCCCceEEEEEeccc
Q psy471 141 KMLEPLLVLTLRKKKK 156 (211)
Q Consensus 141 D~GggT~Dvsv~~~~~ 156 (211)
-|||.+|-+-|++.++
T Consensus 300 Sm~GYNTvCeILs~~k 315 (400)
T COG4671 300 SMGGYNTVCEILSFGK 315 (400)
T ss_pred ecccchhhhHHHhCCC
Confidence 7888887777766554
No 151
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=27.18 E-value=2.6e+02 Score=20.62 Aligned_cols=62 Identities=11% Similarity=0.038 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHhhccccceeeEccCCCccHHHHHHHHHHHHHhCCceeEEeechhHHHHHccccc
Q psy471 62 LFQLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDK 129 (211)
Q Consensus 62 ~a~iL~~L~~~a~~~~g~~~~~vVItVPa~f~~~qR~al~~Aa~~aGl~~~~lv~EP~AAAl~y~~~~ 129 (211)
+...+..|.+...++....+.=+.|++ - ....+++-++..|++...+.+.....+-.|++..
T Consensus 39 C~~~~~~l~~~~~~~~~~~~~vv~is~--d----~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~ 100 (140)
T cd03017 39 CTKEACDFRDLYEEFKALGAVVIGVSP--D----SVESHAKFAEKYGLPFPLLSDPDGKLAKAYGVWG 100 (140)
T ss_pred hHHHHHHHHHHHHHHHHCCCEEEEEcC--C----CHHHHHHHHHHhCCCceEEECCccHHHHHhCCcc
Confidence 555556666665554443444344443 1 1233445555567776644444455556676554
No 152
>PRK13190 putative peroxiredoxin; Provisional
Probab=26.69 E-value=3.6e+02 Score=22.12 Aligned_cols=65 Identities=12% Similarity=0.082 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHhhccccceeeEccCCCccHHHHHHHHHHHHHhCCc-eeEEeech-hHHHHHcccc
Q psy471 62 LFQLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLN-VMRIVNEP-TAAALAYGLD 128 (211)
Q Consensus 62 ~a~iL~~L~~~a~~~~g~~~~~vVItVPa~f~~~qR~al~~Aa~~aGl~-~~~lv~EP-~AAAl~y~~~ 128 (211)
+..-+..|.+....+....+.=+.||+-. ...++.++.......|+. ...++.+| ...+-.|++.
T Consensus 43 C~~El~~l~~~~~~f~~~~~~vi~vS~D~--~~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia~~ygv~ 109 (202)
T PRK13190 43 CTTEFIAFSRRYEDFKKLGVELVGLSVDS--IYSHIAWLRDIEERFGIKIPFPVIADIDKELAREYNLI 109 (202)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEeCCC--HHHHHHHHHhHHHhcCCCceEEEEECCChHHHHHcCCc
Confidence 34445556666555544444444555443 244556666655555642 23455555 4566678864
No 153
>PLN02596 hexokinase-like
Probab=25.85 E-value=67 Score=30.83 Aligned_cols=26 Identities=8% Similarity=-0.092 Sum_probs=0.0
Q ss_pred CceEEEeecCCCceEEEEEeccchhh
Q psy471 134 ERNVKLPKMLEPLLVLTLRKKKKKKK 159 (211)
Q Consensus 134 ~~~vLV~D~GggT~Dvsv~~~~~~~e 159 (211)
...+|.+||||.+|=|.++++.+..+
T Consensus 95 ~G~yLAlDlGGTNfRV~~V~L~g~~~ 120 (490)
T PLN02596 95 KGLYYGLNLRGSNFLLLRARLGGKNE 120 (490)
T ss_pred ceEEEEEeeCCceEEEEEEEEcCCCC
No 154
>KOG1189|consensus
Probab=25.65 E-value=25 Score=35.55 Aligned_cols=20 Identities=20% Similarity=0.298 Sum_probs=14.9
Q ss_pred eehhhhHHhhhcccCcccch
Q psy471 7 IVSLEDVKLRQNQPCQATDN 26 (211)
Q Consensus 7 ~~s~~~~~~a~~~~~~~p~n 26 (211)
.|-|.|++++.=+||..-.+
T Consensus 644 diLfsNIKhafFqpc~~Emi 663 (960)
T KOG1189|consen 644 DILFSNIKHAFFQPCEGEMI 663 (960)
T ss_pred hhhhhhhhhhhcCcccccee
Confidence 46788888888888875544
No 155
>PF06908 DUF1273: Protein of unknown function (DUF1273); InterPro: IPR024718 This entry represents a functionally uncharacterised domain.; PDB: 2NX2_A.
Probab=25.20 E-value=53 Score=27.02 Aligned_cols=126 Identities=12% Similarity=0.143 Sum_probs=53.8
Q ss_pred CccceehhhhHHhhhcccCcccchhhHhhhhhcCCCCCcccceecceeeccccCCCchHHHHHHHHHHHHHHHhhccccc
Q psy471 3 KLLTIVSLEDVKLRQNQPCQATDNNIGYLARSFEGPEWDYGHVRLRKSFSPRCCHHSPRLFQLLTKMKETAEAYLGHSVR 82 (211)
Q Consensus 3 k~~~~~s~~~~~~a~~~~~~~p~n~~~~l~r~~~g~~~~~~~~~~~k~~speel~~~~~~a~iL~~L~~~a~~~~g~~~~ 82 (211)
|++.+.|+-...+.. .--..| ....++..+.......-..+....++.-+++....++.++-.|+.. + +--
T Consensus 2 ~~~~~TGyR~~eL~~-f~~~~~--~~~~ik~~L~~~i~~lie~G~~~fi~GgalG~D~waae~vl~LK~~---y---p~i 72 (177)
T PF06908_consen 2 KRCCFTGYRPYELGI-FNEKDP--KIQVIKKALKKQIIELIEEGVRWFITGGALGVDLWAAEVVLELKKE---Y---PEI 72 (177)
T ss_dssp -EEEEEE--GGGGT---SS--H--HHHHHHHHHHHHHHHHHTTT--EEEE---TTHHHHHHHHHHTTTTT-------TT-
T ss_pred eEEEEEecChhhcCC-CCCCch--hHHHHHHHHHHHHHHHHHCCCCEEEECCcccHHHHHHHHHHHHHhh---h---hhe
Confidence 788888888888776 333333 2222332222110000000011223444443333366666666544 1 223
Q ss_pred eeeEccC-----CCccHHHHHHHHHHHHHhCCceeEEeec-hh--HHHH-H---cccccCCCCCceEEEeec
Q psy471 83 DAVITVP-----AYFNDAQRQATKDAGAIAGLNVMRIVNE-PT--AAAL-A---YGLDKNLKGERNVKLPKM 142 (211)
Q Consensus 83 ~vVItVP-----a~f~~~qR~al~~Aa~~aGl~~~~lv~E-P~--AAAl-~---y~~~~~~~~~~~vLV~D~ 142 (211)
++++.+| ..|+...|..+......| +.+.+++. |- ..++ . |-+. .....++|||-
T Consensus 73 kL~~v~Pf~~q~~~W~~~~q~~y~~il~~a--D~v~~vs~~~Y~~~~~~~~rn~fMvd---hsd~~iavyD~ 139 (177)
T PF06908_consen 73 KLALVLPFENQGNNWNEANQERYQSILEQA--DFVVVVSERPYYSPGQLQKRNRFMVD---HSDGLIAVYDG 139 (177)
T ss_dssp EEEEEESSB-TTTTS-HHHHHHHHHHHHH---SEEEESSSSB---HHHHHHHHHHHHH---HSSEEEEE--T
T ss_pred EEEEEEcccchhhcCCHHHHHHHHHHHHhC--CEEEEccCCCCCCHHHHHHHhHHHHh---CCCeEEEEEeC
Confidence 4455555 458899998888887666 44445543 22 2333 1 2222 25778899996
No 156
>PRK14878 UGMP family protein; Provisional
Probab=24.79 E-value=3.5e+02 Score=24.09 Aligned_cols=70 Identities=11% Similarity=-0.057 Sum_probs=33.5
Q ss_pred ccceeeEcc-CCCccHHHHH--HHHHHHHHhCCceeEEeechhHHHHHcccccCCCCCceEEEeecCCCceEEEEEe
Q psy471 80 SVRDAVITV-PAYFNDAQRQ--ATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVKLPKMLEPLLVLTLRK 153 (211)
Q Consensus 80 ~~~~vVItV-Pa~f~~~qR~--al~~Aa~~aGl~~~~lv~EP~AAAl~y~~~~~~~~~~~vLV~D~GggT~Dvsv~~ 153 (211)
.++.+++|. |.+|+...-- .-+..|...+.+++ -|+--.|=|++..+......+ .+|++|=| ++.+.+.+
T Consensus 65 did~Iavt~gPG~~~~lrvg~~~Ak~la~~~~~p~~-~v~h~~~Ha~sa~~~s~~~~~-l~l~vsGg--~t~i~~~~ 137 (323)
T PRK14878 65 DIDAVAVSQGPGLGPALRVGATAARALALKYNKPLV-PVNHCIAHIEIGRLTTGAKDP-VVLYVSGG--NTQVLAFR 137 (323)
T ss_pred HCCEEEEecCCCcccchHHHHHHHHHHHHHhCCCcc-ccchHHHHHHhhhhcCCCCCC-EEEEEEcC--CeEEEEEe
Confidence 467788887 6666643221 12223344465544 444443333222222222233 66777765 66665555
No 157
>KOG3064|consensus
Probab=24.60 E-value=27 Score=30.91 Aligned_cols=11 Identities=0% Similarity=0.163 Sum_probs=5.2
Q ss_pred eeEccCCCccH
Q psy471 84 AVITVPAYFND 94 (211)
Q Consensus 84 vVItVPa~f~~ 94 (211)
.+|.++.....
T Consensus 133 ~~vp~~~K~~r 143 (303)
T KOG3064|consen 133 KLVPIKKKVER 143 (303)
T ss_pred EEeecchHHHH
Confidence 44555544433
No 158
>KOG2413|consensus
Probab=24.59 E-value=48 Score=32.51 Aligned_cols=45 Identities=18% Similarity=0.166 Sum_probs=33.5
Q ss_pred hCCceeEEe-e-chhHHHHHcccccCCC---CCceEEEeecCC----CceEEEE
Q psy471 107 AGLNVMRIV-N-EPTAAALAYGLDKNLK---GERNVKLPKMLE----PLLVLTL 151 (211)
Q Consensus 107 aGl~~~~lv-~-EP~AAAl~y~~~~~~~---~~~~vLV~D~Gg----gT~Dvsv 151 (211)
.|+..-.|. . -|-+|.++|.-....+ ++..+.+||-|+ ||||+|-
T Consensus 364 mglSFeTIS~s~G~NgAviHYsP~~e~n~~i~~~kiyL~DSGaQY~DGTTDvTR 417 (606)
T KOG2413|consen 364 MGLSFETISSSVGPNGAVIHYSPPAETNRIVSPDKIYLCDSGAQYLDGTTDVTR 417 (606)
T ss_pred cCcCcceeeccCCCCceeeecCCCccccceecCceEEEEccCcccccCccceeE
Confidence 366666666 3 6888888886554422 688899999998 9999984
No 159
>PRK08187 pyruvate kinase; Validated
Probab=24.56 E-value=1.3e+02 Score=28.98 Aligned_cols=92 Identities=20% Similarity=0.133 Sum_probs=47.0
Q ss_pred ceehhhhHHhhhcccCcccchhhHhhhhhcCCCCCcccceecceeeccccCCCchHHHHHHHHHHHHHHHhhccc----c
Q psy471 6 TIVSLEDVKLRQNQPCQATDNNIGYLARSFEGPEWDYGHVRLRKSFSPRCCHHSPRLFQLLTKMKETAEAYLGHS----V 81 (211)
Q Consensus 6 ~~~s~~~~~~a~~~~~~~p~n~~~~l~r~~~g~~~~~~~~~~~k~~speel~~~~~~a~iL~~L~~~a~~~~g~~----~ 81 (211)
+-.|++++.....+...+.+.....+....+....+. .-++.. ...--+.|...+...+|.+ -
T Consensus 68 ~~~glssl~~~e~~v~~~l~~~~~~l~~~~~~~~~~~-------~~~~~~------~~~g~~~l~~~~~~l~g~~~~~r~ 134 (493)
T PRK08187 68 MPLGLSSLGRLESRVLPTLDAVIAALAALCGEPGPPP-------RPSPEQ------FFAGERLLAAHTEELFGPRPAARR 134 (493)
T ss_pred HHhccchhccchhHHHHHHHHHHHHHHHHhCCCCCCC-------CCchhh------hhhHHHHHHHHHHHHcCCCcCCCC
Confidence 3344555555555555555555555555554332210 011111 2223344556666677743 3
Q ss_pred ceeeEccC--CCccHHHHHHHHHHHHHhCCceeEE
Q psy471 82 RDAVITVP--AYFNDAQRQATKDAGAIAGLNVMRI 114 (211)
Q Consensus 82 ~~vVItVP--a~f~~~qR~al~~Aa~~aGl~~~~l 114 (211)
.++++|+| +..+... ....-.+|++++||
T Consensus 135 tkIv~Tlg~pa~~~~e~----i~~Li~aGmdvaRi 165 (493)
T PRK08187 135 TRIMVTLPSEAADDPDF----VLRLAERGMDCARI 165 (493)
T ss_pred ceEEEECCCCccCCHHH----HHHHHHCCCCEEEE
Confidence 67999994 5555432 23333488898887
No 160
>PRK13189 peroxiredoxin; Provisional
Probab=24.54 E-value=4.1e+02 Score=22.27 Aligned_cols=65 Identities=8% Similarity=0.082 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHhhccccceeeEccCCCccHHHHHHHHHHHHHhCCc-eeEEeechh-HHHHHcccc
Q psy471 62 LFQLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLN-VMRIVNEPT-AAALAYGLD 128 (211)
Q Consensus 62 ~a~iL~~L~~~a~~~~g~~~~~vVItVPa~f~~~qR~al~~Aa~~aGl~-~~~lv~EP~-AAAl~y~~~ 128 (211)
+..-|..|.+.+..+....+.=+.||+-..+ .++.++.......|.. ...++.++. ..+-.|++.
T Consensus 51 C~tEl~~l~~~~~ef~~~~v~VigvS~D~~~--~h~aw~~~~~~~~g~~i~fPllsD~~~~ia~~ygv~ 117 (222)
T PRK13189 51 CTTEFVAFQKRYDEFRELNTELIGLSIDQVF--SHIKWVEWIKEKLGVEIEFPIIADDRGEIAKKLGMI 117 (222)
T ss_pred CHHHHHHHHHHHHHHHHcCCEEEEEECCCHH--HHHHHHHhHHHhcCcCcceeEEEcCccHHHHHhCCC
Confidence 4455566666666665445554556665443 3444554443333432 233566665 556678765
No 161
>PRK13441 F0F1 ATP synthase subunit delta; Provisional
Probab=24.37 E-value=3.4e+02 Score=21.84 Aligned_cols=74 Identities=9% Similarity=-0.038 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHhhccccceeeEccCCCccHHHHHHHHHHHH-HhCCceeEEee--chhHHHHHcccccCCCCCceEE
Q psy471 62 LFQLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGA-IAGLNVMRIVN--EPTAAALAYGLDKNLKGERNVK 138 (211)
Q Consensus 62 ~a~iL~~L~~~a~~~~g~~~~~vVItVPa~f~~~qR~al~~Aa~-~aGl~~~~lv~--EP~AAAl~y~~~~~~~~~~~vL 138 (211)
+..++..+........| ...+.|+.+...++.|...+..... ..|-++. +.. +|...+ =+
T Consensus 90 l~~I~~~f~~l~~~~~~--~~~~~V~sA~~L~~~~~~~i~~~l~k~~~~~v~-l~~~vD~sliG--------------G~ 152 (180)
T PRK13441 90 LPQIRALFEYEKILSEQ--KVPVNLTTAHELSDEELKLLRKFVRKYVLRDPV-FEETIDESLIA--------------GA 152 (180)
T ss_pred HHHHHHHHHHHHHHhcC--eeEEEEEecccCCHHHHHHHHHHHHHHHCCcce-EEeeeChHHhC--------------cE
Confidence 44455555555554434 4456677777788888888887664 3343322 221 332211 14
Q ss_pred EeecCCCceEEEEE
Q psy471 139 LPKMLEPLLVLTLR 152 (211)
Q Consensus 139 V~D~GggT~Dvsv~ 152 (211)
++.+|.-.+|.|+-
T Consensus 153 ~i~ig~~~~D~Sik 166 (180)
T PRK13441 153 VVEFEGKRLDVTVQ 166 (180)
T ss_pred EEEECCEEEeHhHH
Confidence 45667777777753
No 162
>COG4012 Uncharacterized protein conserved in archaea [Function unknown]
Probab=24.15 E-value=65 Score=28.85 Aligned_cols=19 Identities=0% Similarity=-0.249 Sum_probs=16.1
Q ss_pred eEEEeecCCCceEEEEEec
Q psy471 136 NVKLPKMLEPLLVLTLRKK 154 (211)
Q Consensus 136 ~vLV~D~GggT~Dvsv~~~ 154 (211)
.+|++|+|.||.|+-.+--
T Consensus 2 kila~DvG~GTqDi~~~d~ 20 (342)
T COG4012 2 KILAIDVGVGTQDIVAYDG 20 (342)
T ss_pred ceEEEEecCCceeEEEecC
Confidence 4799999999999987654
No 163
>PRK08474 F0F1 ATP synthase subunit delta; Validated
Probab=23.95 E-value=3.9e+02 Score=21.52 Aligned_cols=73 Identities=1% Similarity=-0.027 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHhhccccceeeEccCCCccHHHHHHHHHHHH-HhCCceeEEeechhHHHHHcccccCCCCCceEEEe
Q psy471 62 LFQLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGA-IAGLNVMRIVNEPTAAALAYGLDKNLKGERNVKLP 140 (211)
Q Consensus 62 ~a~iL~~L~~~a~~~~g~~~~~vVItVPa~f~~~qR~al~~Aa~-~aGl~~~~lv~EP~AAAl~y~~~~~~~~~~~vLV~ 140 (211)
+..++..+........| ...+.|+.+...++.|++.+..... ..|- .+.+-..+. +=.=+++
T Consensus 86 L~~I~~~f~~~~~~~~~--~~~~~V~SA~~Ls~~q~~~i~~~l~~~~g~-~v~l~~~vD--------------~IGG~ii 148 (176)
T PRK08474 86 IPAIAKELERQIALKEN--EYVGVVYSNEKLSEETLKKLEEKLSKKFNA-KIKLKQKKS--------------DYDGIKV 148 (176)
T ss_pred HHHHHHHHHHHHHHHcC--eEEEEEEECccCCHHHHHHHHHHHHHHhCC-eEEEEEEEc--------------CCCCEEE
Confidence 44555555555554444 4556777777788999999998875 5564 444433221 1112566
Q ss_pred ecCCCceEEEE
Q psy471 141 KMLEPLLVLTL 151 (211)
Q Consensus 141 D~GggT~Dvsv 151 (211)
.+|.-.+|.|+
T Consensus 149 ~igd~v~D~s~ 159 (176)
T PRK08474 149 EVDDLGVEVSF 159 (176)
T ss_pred EECCEEEEeee
Confidence 77888888754
No 164
>PRK13436 F0F1 ATP synthase subunit delta; Provisional
Probab=23.82 E-value=3.9e+02 Score=21.57 Aligned_cols=73 Identities=14% Similarity=0.125 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHhhccccceeeEccCCCccHHHHHHHHHHHH-HhCCceeEEee--chhHHHHHcccccCCCCCceEE
Q psy471 62 LFQLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGA-IAGLNVMRIVN--EPTAAALAYGLDKNLKGERNVK 138 (211)
Q Consensus 62 ~a~iL~~L~~~a~~~~g~~~~~vVItVPa~f~~~qR~al~~Aa~-~aGl~~~~lv~--EP~AAAl~y~~~~~~~~~~~vL 138 (211)
+..++..+...+..+.| ...+.|+.....++.|+..+..... ..|- .+.+-. +|. .+ .=+
T Consensus 91 l~~I~~~f~~~~~~~~~--~~~~~V~sA~~Ls~~~~~~i~~~l~~~~g~-~v~l~~~vDps--lI------------GGi 153 (179)
T PRK13436 91 IKQILKKFVKLSNEKLN--ITYGEIYTTEPLSEVQISRFESKLSKKLNK-KVHLVNKIDPK--LI------------AGI 153 (179)
T ss_pred HHHHHHHHHHHHHHHcC--eEEEEEEecCCCCHHHHHHHHHHHHHHHCC-eEEEEeecCHH--Hc------------Cce
Confidence 56666666666666655 4456666666678999998888765 4453 333322 222 11 114
Q ss_pred EeecCCCceEEEE
Q psy471 139 LPKMLEPLLVLTL 151 (211)
Q Consensus 139 V~D~GggT~Dvsv 151 (211)
++.+|+--+|.||
T Consensus 154 ~i~~gd~viD~Si 166 (179)
T PRK13436 154 KIKVDNKVFENSI 166 (179)
T ss_pred EEEECCEEeehhH
Confidence 5667777777775
No 165
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=23.67 E-value=1.5e+02 Score=22.49 Aligned_cols=36 Identities=17% Similarity=0.208 Sum_probs=21.7
Q ss_pred cceeeEccCCCccHHHHHHHHHHHHHhCCceeEEee
Q psy471 81 VRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVN 116 (211)
Q Consensus 81 ~~~vVItVPa~f~~~qR~al~~Aa~~aGl~~~~lv~ 116 (211)
..-+++.||+++....--...-+.....+..++|+.
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riir 48 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIR 48 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEee
Confidence 445788999998876543323333344555666655
No 166
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=23.64 E-value=91 Score=25.65 Aligned_cols=34 Identities=26% Similarity=0.225 Sum_probs=27.6
Q ss_pred CCCccHHHHHHHHHHHHHhCCceeEEeechhHHH
Q psy471 89 PAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAA 122 (211)
Q Consensus 89 Pa~f~~~qR~al~~Aa~~aGl~~~~lv~EP~AAA 122 (211)
|..++.-||+.+.-|...+.-+.+-|++||+++.
T Consensus 139 ~~~LSgG~~qrv~la~al~~~p~llllDEPt~~L 172 (227)
T cd03260 139 ALGLSGGQQQRLCLARALANEPEVLLLDEPTSAL 172 (227)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccC
Confidence 5788888888888777777777788999999843
No 167
>TIGR01145 ATP_synt_delta ATP synthase, F1 delta subunit. This model describes the ATP synthase delta subunit in bacteria, mitochondria, and chloroplasts. It is sometimes called OSCP for Oligomycin Sensitivity Conferring Protein. F1/F0-ATP synthase is a multisubunit, membrane associated enzyme found in bacteria and organelles of higher eukaryotes, namely, mitochondria and chloroplast. This enzyme is principally involved in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. Delta subunit belongs to the F1 cluster or sector and functionally implicated in the overall stability of the complex. Expression of truncated forms of this subunit results in low ATPase activity.
Probab=23.54 E-value=3.8e+02 Score=21.29 Aligned_cols=75 Identities=9% Similarity=0.105 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHhhccccceeeEccCCCccHHHHHHHHHHHH-HhCCceeEEee--chhHHHHHcccccCCCCCceEE
Q psy471 62 LFQLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGA-IAGLNVMRIVN--EPTAAALAYGLDKNLKGERNVK 138 (211)
Q Consensus 62 ~a~iL~~L~~~a~~~~g~~~~~vVItVPa~f~~~qR~al~~Aa~-~aGl~~~~lv~--EP~AAAl~y~~~~~~~~~~~vL 138 (211)
+..++..+........| ...+.|+.+...++.++..+..+.. ..|-+.+.+.. +|...+ =+
T Consensus 85 l~~I~~~~~~~~~~~~~--~~~~~v~sa~~L~~~~~~~l~~~l~~~~~~~~v~~~~~vd~~lig--------------Gi 148 (172)
T TIGR01145 85 LPDILDQFLKLSYEAQQ--TADVEVISAKPLTEDQQAKIAEKLEKITGAAKVKLNCKVDKDLIG--------------GV 148 (172)
T ss_pred HHHHHHHHHHHHHHhcC--EEEEEEEEccCCCHHHHHHHHHHHHHHhCCCeEEEEEeECHHHhC--------------ce
Confidence 55566666666655444 3355666666678888888887765 44543554544 554322 13
Q ss_pred EeecCCCceEEEEE
Q psy471 139 LPKMLEPLLVLTLR 152 (211)
Q Consensus 139 V~D~GggT~Dvsv~ 152 (211)
++.+|+-.+|.|+-
T Consensus 149 ~i~~~~~~iD~Si~ 162 (172)
T TIGR01145 149 IIRIGDRVIDGSVR 162 (172)
T ss_pred EEEECCEEEehhHH
Confidence 34556666666653
No 168
>PRK06032 fliH flagellar assembly protein H; Validated
Probab=23.35 E-value=2.7e+02 Score=22.98 Aligned_cols=56 Identities=14% Similarity=0.138 Sum_probs=35.5
Q ss_pred eeeEccCCCccHHHHHHHHHHHHHhCC-ceeEEeechhHHHHHcccccCCCCCceEEEeecCCCceEEEE
Q psy471 83 DAVITVPAYFNDAQRQATKDAGAIAGL-NVMRIVNEPTAAALAYGLDKNLKGERNVKLPKMLEPLLVLTL 151 (211)
Q Consensus 83 ~vVItVPa~f~~~qR~al~~Aa~~aGl-~~~~lv~EP~AAAl~y~~~~~~~~~~~vLV~D~GggT~Dvsv 151 (211)
.++|.|++..-..-+..+...+...|+ ..+.|+.+|..+ ..=+.+..+.|..|.++
T Consensus 129 ~v~I~v~P~d~~~l~~~l~~~~~~~~~~~~~~l~~D~~L~-------------~G~c~vet~~G~vd~d~ 185 (199)
T PRK06032 129 HLVVRVNDALVEAARERLERLARESGFEGRLVVLADPDMA-------------PGDCRLEWADGGVVRDR 185 (199)
T ss_pred cEEEEECHHHHHHHHHHHHHHHHhcCcCccEEEeeCCCCC-------------CCCeEEEeCCCeEecCH
Confidence 677877766556666666666666665 356677777632 22345666777777654
No 169
>PRK14725 pyruvate kinase; Provisional
Probab=23.33 E-value=1e+02 Score=30.45 Aligned_cols=96 Identities=19% Similarity=0.130 Sum_probs=50.6
Q ss_pred cceehhhhHHhhhcccCcccchhhHhhhhhcCCCCCcccceecceeeccccCCCchHHHHHHHHHHHHHHHhhccc----
Q psy471 5 LTIVSLEDVKLRQNQPCQATDNNIGYLARSFEGPEWDYGHVRLRKSFSPRCCHHSPRLFQLLTKMKETAEAYLGHS---- 80 (211)
Q Consensus 5 ~~~~s~~~~~~a~~~~~~~p~n~~~~l~r~~~g~~~~~~~~~~~k~~speel~~~~~~a~iL~~L~~~a~~~~g~~---- 80 (211)
|+-.|+.++.....+...+.+.....+...++....... .-++ .- ...--+.|.+.+...+|.+
T Consensus 72 L~~~GlssLg~~E~~vl~~L~av~~~l~~l~~~~~~~~~------~~~~-~~-----~~~g~~lL~~~~~~l~G~~~~~R 139 (608)
T PRK14725 72 LADLGLSSLGRAEAHVLAALDAVLAVLRALLGEGPAYPP------EDTA-VT-----FEEGDELLDEHAEALLGPPPSGR 139 (608)
T ss_pred HHHhCccccccchhhHHHHHHHHHHHHHHHhCCCCCCCC------CCch-hh-----hhhHHHHHHHHHHHhcCCCCCCC
Confidence 344555666666666666666666666666654321100 0111 11 2223344666777777744
Q ss_pred cceeeEccCCCccHHHHHHHHHHHHHhCCceeEE
Q psy471 81 VRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRI 114 (211)
Q Consensus 81 ~~~vVItVPa~f~~~qR~al~~Aa~~aGl~~~~l 114 (211)
-.++++|+|.-+.... .+....-.+|++++||
T Consensus 140 ~tkImvTlg~~Aa~d~--e~i~~Li~aGmdvaRI 171 (608)
T PRK14725 140 PTRIMVTLPTEAADDP--DLVRRLLAAGMDIARI 171 (608)
T ss_pred CceEEEeCCCcccCCH--HHHHHHHHcCCCEeee
Confidence 3579999994222111 2333334578998887
No 170
>PRK13317 pantothenate kinase; Provisional
Probab=23.25 E-value=2.4e+02 Score=24.81 Aligned_cols=74 Identities=11% Similarity=0.052 Sum_probs=49.0
Q ss_pred eeeccccCCCchHHHHHHHHHHHHHHHh-----hccccceeeEcc-CCCccHHHHHHHHHHHHHhCCceeEEeechhHHH
Q psy471 49 KSFSPRCCHHSPRLFQLLTKMKETAEAY-----LGHSVRDAVITV-PAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAA 122 (211)
Q Consensus 49 k~~speel~~~~~~a~iL~~L~~~a~~~-----~g~~~~~vVItV-Pa~f~~~qR~al~~Aa~~aGl~~~~lv~EP~AAA 122 (211)
+.+++++| ++-++.-+.+..-.. ......+++++= |..+++.-|+++.+....-+.+++..-+...+.|
T Consensus 191 ~g~~~eDI-----aasl~~~v~~~I~~lA~~~ar~~~~~~Ivf~G~gla~n~~l~~~l~~~l~~~~~~~~~p~~~~~~gA 265 (277)
T PRK13317 191 SEFTSSDI-----LAGVIGLVGEVITTLSIQAAREKNIENIVYIGSTLTNNPLLQEIIESYTKLRNCTPIFLENGGYSGA 265 (277)
T ss_pred cCCCHHHH-----HHHHHHHHHHHHHHHHHHHHHhcCCCeEEEECcccccCHHHHHHHHHHHhcCCceEEecCCCchhHH
Confidence 44677788 776665554443322 123457888886 8889998888888877666777665555556666
Q ss_pred HHccc
Q psy471 123 LAYGL 127 (211)
Q Consensus 123 l~y~~ 127 (211)
+..++
T Consensus 266 lGAaL 270 (277)
T PRK13317 266 IGALL 270 (277)
T ss_pred HHHHH
Confidence 66554
No 171
>KOG1185|consensus
Probab=23.09 E-value=2.8e+02 Score=27.00 Aligned_cols=47 Identities=26% Similarity=0.275 Sum_probs=31.9
Q ss_pred hhccccceeeEccCCCccHHHHHHHHHHHHHhCCceeEEeechhH--HHHHccccc
Q psy471 76 YLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTA--AALAYGLDK 129 (211)
Q Consensus 76 ~~g~~~~~vVItVPa~f~~~qR~al~~Aa~~aGl~~~~lv~EP~A--AAl~y~~~~ 129 (211)
.+|...-=.++.+|. --|..||...|++.+..-||-+| ||-+|+.-.
T Consensus 26 ~~gVe~iFgiVGipV-------~el~~aaqalGIk~I~~RnEqaA~yAA~A~gyLt 74 (571)
T KOG1185|consen 26 AQGVEYIFGIVGIPV-------IELAVAAQALGIKFIGTRNEQAAVYAASAYGYLT 74 (571)
T ss_pred HcCceEEEEEeccch-------HHHHHHHHHcCCeEeecccHHHHHHHHHHhhhhc
Confidence 344333334677775 35778999999999999999887 344454433
No 172
>KOG1386|consensus
Probab=22.99 E-value=82 Score=30.30 Aligned_cols=98 Identities=13% Similarity=0.077 Sum_probs=57.0
Q ss_pred ccccCCCchHHHHHHHHHHHHHHHhhccc---cceeeEccCCCc---cH-HHHHHHHHHHHH----hCC----ceeEEee
Q psy471 52 SPRCCHHSPRLFQLLTKMKETAEAYLGHS---VRDAVITVPAYF---ND-AQRQATKDAGAI----AGL----NVMRIVN 116 (211)
Q Consensus 52 speel~~~~~~a~iL~~L~~~a~~~~g~~---~~~vVItVPa~f---~~-~qR~al~~Aa~~----aGl----~~~~lv~ 116 (211)
.|+++ . ..|+.|.+.|+.+.... -..+-|..-|.. .. .|..++..+... .++ .-++||+
T Consensus 59 nP~~a-----~-~~l~pLlefA~~~IPk~~h~~Tpl~l~ATAGMRLL~~~~qeaIl~~l~~~l~~~s~f~f~~~~a~IIs 132 (501)
T KOG1386|consen 59 NPEGA-----S-VYLTPLLEFAKEHIPKEKHKETPLFLGATAGMRLLPLAQQEAILEVLRRVLKSLSDFLFDDEWARIIS 132 (501)
T ss_pred Chhhh-----H-HHHHHHHHHHHhhCCHhhcCCCCeEEEecccceecCcccHHHHHHHHHHhcccccCCcccccccEEee
Confidence 56666 5 78888999888776533 223334333332 22 333333333332 233 2367777
Q ss_pred chhHHH-----HHcccccCCC------CCceEEEeecCCCceEEEEEecc
Q psy471 117 EPTAAA-----LAYGLDKNLK------GERNVKLPKMLEPLLVLTLRKKK 155 (211)
Q Consensus 117 EP~AAA-----l~y~~~~~~~------~~~~vLV~D~GggT~Dvsv~~~~ 155 (211)
--.-.. +.|.+.+-.. +..++-++||||.++.|+...-+
T Consensus 133 G~~EGvYgWi~~NY~LG~f~~~~~~~~~~~T~G~lDlGGAS~QItFe~~~ 182 (501)
T KOG1386|consen 133 GKEEGVYGWIAANYLLGRFGKKNRWDSRKETFGALDLGGASTQITFEPPN 182 (501)
T ss_pred cccceehhhHHHHHHHHhccccCcccCCcceeeeEecCCceeEEEEecCc
Confidence 544333 3344443322 56789999999999999987654
No 173
>TIGR03825 FliH_bacil flagellar assembly protein FliH. This bacillus clade of FliH proteins is not found by the Pfam FliH model pfam02108, but is closely related to the sequences identified by that model. Sequences identified by this model are observed in flagellar operons in an analogous position relative to other flagellar operon genes.
Probab=22.98 E-value=3.1e+02 Score=23.54 Aligned_cols=58 Identities=5% Similarity=-0.016 Sum_probs=32.3
Q ss_pred cceeeEccCCCccHHHHHHHHHHHHHh-CCceeEEeechhHHHHHcccccCCCCCceEEEeecCCCceEEEE
Q psy471 81 VRDAVITVPAYFNDAQRQATKDAGAIA-GLNVMRIVNEPTAAALAYGLDKNLKGERNVKLPKMLEPLLVLTL 151 (211)
Q Consensus 81 ~~~vVItVPa~f~~~qR~al~~Aa~~a-Gl~~~~lv~EP~AAAl~y~~~~~~~~~~~vLV~D~GggT~Dvsv 151 (211)
...++|.|++.....-+...-...... +...+.|+.+|.. ...-+++.-..|..|++|
T Consensus 175 ~~~i~I~v~p~d~~~v~~~~~~l~~~~~~~~~i~i~~D~~l-------------~~GgcvIEt~~G~iDasl 233 (255)
T TIGR03825 175 FDEVSIYVHPHWYERVAAQKDELQSILPACEHLAVYPDEKL-------------PDGGCYVETNFGRIDASV 233 (255)
T ss_pred CCcEEEEECHHHHHHHHHhHHHHHhhcCCCCceEEEeCCCC-------------CCCCeEEEcCCceEEeeH
Confidence 356777777554444443333333333 3355677777763 233455666677788876
No 174
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=22.97 E-value=1.2e+02 Score=23.25 Aligned_cols=60 Identities=25% Similarity=0.170 Sum_probs=37.4
Q ss_pred ceeeEccCCCccHHHHHHHHHHHHHhCCceeEEeechhHHHHHcccccCCCCCceEEEeecCCCc
Q psy471 82 RDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVKLPKMLEPL 146 (211)
Q Consensus 82 ~~vVItVPa~f~~~qR~al~~Aa~~aGl~~~~lv~EP~AAAl~y~~~~~~~~~~~vLV~D~GggT 146 (211)
-+.++++|...... +.++....+++.+...+|..|+.++.+..+... .-.+++.-.|.|.
T Consensus 12 v~~vfg~pg~~~~~----l~~~~~~~~~~~i~~~~E~~A~~~A~g~~~~~~-~~~v~~~~~gpG~ 71 (155)
T cd07035 12 VDHVFGVPGGAILP----LLDALARSGIRYILVRHEQGAVGMADGYARATG-KPGVVLVTSGPGL 71 (155)
T ss_pred CCEEEECCCCchHH----HHHHhccCCCEEEEeCCHHHHHHHHHHHHHHHC-CCEEEEEcCCCcH
Confidence 35678899854333 223333578999999999999888877665521 2334444445544
No 175
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=22.82 E-value=82 Score=30.10 Aligned_cols=39 Identities=28% Similarity=0.271 Sum_probs=29.8
Q ss_pred eeEccCCCccHHHHHHHHHHHHHhCCceeEEeechhHHH
Q psy471 84 AVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAA 122 (211)
Q Consensus 84 vVItVPa~f~~~qR~al~~Aa~~aGl~~~~lv~EP~AAA 122 (211)
..-..|.-|+.-||+.+.-|-.+.--+.+.+++|||.|.
T Consensus 419 ~r~RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSAL 457 (534)
T COG4172 419 TRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSAL 457 (534)
T ss_pred HhhcCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHh
Confidence 445789999988888777665555556777999999875
No 176
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=22.59 E-value=2.3e+02 Score=24.50 Aligned_cols=37 Identities=19% Similarity=0.209 Sum_probs=27.9
Q ss_pred ceeeEccCCCccHHHHHHHHHHHHHhCCceeEEeechh
Q psy471 82 RDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPT 119 (211)
Q Consensus 82 ~~vVItVPa~f~~~qR~al~~Aa~~aGl~~~~lv~EP~ 119 (211)
.++|+.-| .|+..+.+.|.++|+.+|+.++.-.|=+.
T Consensus 93 ~~vVigtt-g~~~e~~~~l~~aA~~~g~~v~~a~NfSl 129 (266)
T TIGR00036 93 VRLVVGTT-GFSEEDKQELADLAEKAGIAAVIAPNFSI 129 (266)
T ss_pred CCEEEECC-CCCHHHHHHHHHHHhcCCccEEEECcccH
Confidence 45777667 58999999999999998887765444333
No 177
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=22.56 E-value=85 Score=25.56 Aligned_cols=36 Identities=25% Similarity=0.290 Sum_probs=27.4
Q ss_pred ccCCCccHHHHHHHHHHHHHhCCceeEEeechhHHH
Q psy471 87 TVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAA 122 (211)
Q Consensus 87 tVPa~f~~~qR~al~~Aa~~aGl~~~~lv~EP~AAA 122 (211)
..|..++.-||+.+.-|...+.-+.+-|++||+++.
T Consensus 126 ~~~~~LSgG~~qrl~la~al~~~p~~lllDEPt~~L 161 (213)
T cd03259 126 RYPHELSGGQQQRVALARALAREPSLLLLDEPLSAL 161 (213)
T ss_pred cChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence 345677888888777777777777788999999743
No 178
>PF00370 FGGY_N: FGGY family of carbohydrate kinases, N-terminal domain; InterPro: IPR018484 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the N-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3G25_D 3GE1_D 2NLX_A 2ITM_A 2ZF5_Y 3L0Q_B 3GG4_B 3I8B_A 3H3O_C 3FLC_X ....
Probab=22.49 E-value=95 Score=25.91 Aligned_cols=21 Identities=5% Similarity=-0.224 Sum_probs=17.7
Q ss_pred eEEEeecCCCceEEEEEeccc
Q psy471 136 NVKLPKMLEPLLVLTLRKKKK 156 (211)
Q Consensus 136 ~vLV~D~GggT~Dvsv~~~~~ 156 (211)
++|.+|+|.+++-+.|+..++
T Consensus 1 y~lgiDiGTts~K~~l~d~~g 21 (245)
T PF00370_consen 1 YYLGIDIGTTSVKAVLFDEDG 21 (245)
T ss_dssp EEEEEEECSSEEEEEEEETTS
T ss_pred CEEEEEEcccceEEEEEeCCC
Confidence 589999999999999987443
No 179
>PLN02405 hexokinase
Probab=22.39 E-value=87 Score=30.11 Aligned_cols=25 Identities=4% Similarity=-0.257 Sum_probs=0.0
Q ss_pred CceEEEeecCCCceEEEEEeccchh
Q psy471 134 ERNVKLPKMLEPLLVLTLRKKKKKK 158 (211)
Q Consensus 134 ~~~vLV~D~GggT~Dvsv~~~~~~~ 158 (211)
...+|.+||||.+|=|.++++.++.
T Consensus 94 ~G~flAlDlGGTNfRV~~V~L~g~~ 118 (497)
T PLN02405 94 KGLFYALDLGGTNFRVLRVLLGGKD 118 (497)
T ss_pred ceeEEEEecCCceEEEEEEEEcCCC
No 180
>PF10982 DUF2789: Protein of unknown function (DUF2789); InterPro: IPR021250 This bacterial family of proteins has no known function. ; PDB: 2KP6_A.
Probab=22.39 E-value=82 Score=22.46 Aligned_cols=24 Identities=13% Similarity=0.210 Sum_probs=17.4
Q ss_pred ceeeEccCCCccHHHHHHHHHHHH
Q psy471 82 RDAVITVPAYFNDAQRQATKDAGA 105 (211)
Q Consensus 82 ~~vVItVPa~f~~~qR~al~~Aa~ 105 (211)
..+-|.=-++|++.||..|+++..
T Consensus 35 ~~~~L~dApFWs~sQ~~FL~E~~~ 58 (74)
T PF10982_consen 35 ADVHLADAPFWSPSQAAFLREALE 58 (74)
T ss_dssp TTS-STT-TTS-HHHHHHHHHHHH
T ss_pred CCCcccCCCCCCHHHHHHHHHHHH
Confidence 456677778999999999998864
No 181
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=22.31 E-value=1.4e+02 Score=27.15 Aligned_cols=41 Identities=27% Similarity=0.219 Sum_probs=35.6
Q ss_pred ceeeEccCCCccHHHHHHHHHHHHHhCCceeEEeechhHHH
Q psy471 82 RDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAA 122 (211)
Q Consensus 82 ~~vVItVPa~f~~~qR~al~~Aa~~aGl~~~~lv~EP~AAA 122 (211)
..+.=..|.-|+.-+|+.+.-|...+.-+.+-|.+|||.|.
T Consensus 144 ~~~~~~YPhelSGGMrQRV~IAmala~~P~LlIADEPTTAL 184 (316)
T COG0444 144 ERRLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTAL 184 (316)
T ss_pred HHHHhhCCcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchh
Confidence 34667789999999999999999889888888999999876
No 182
>KOG4156|consensus
Probab=22.05 E-value=27 Score=34.89 Aligned_cols=11 Identities=27% Similarity=0.169 Sum_probs=6.0
Q ss_pred CceEEEeecCC
Q psy471 134 ERNVKLPKMLE 144 (211)
Q Consensus 134 ~~~vLV~D~Gg 144 (211)
+-+|+|-|+|.
T Consensus 552 nvnvivkd~~t 562 (1329)
T KOG4156|consen 552 NVNVIVKDMGT 562 (1329)
T ss_pred ccceeehhhcc
Confidence 34455666665
No 183
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=22.04 E-value=1.2e+02 Score=23.95 Aligned_cols=35 Identities=14% Similarity=0.068 Sum_probs=26.4
Q ss_pred cCCCccHHHHHHHHHHHHHhCCceeEEeechhHHH
Q psy471 88 VPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAA 122 (211)
Q Consensus 88 VPa~f~~~qR~al~~Aa~~aGl~~~~lv~EP~AAA 122 (211)
.|..++.-||+.+.-|...+.-+.+-|++||+++.
T Consensus 88 ~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~L 122 (166)
T cd03223 88 WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSAL 122 (166)
T ss_pred CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCcccc
Confidence 35677777777777777667767777999999754
No 184
>PF08759 DUF1792: Domain of unknown function (DUF1792); InterPro: IPR014869 This domain is found at the C terminus of proteins such as Q97P75 from SWISSPROT that also contain the glycosyl transferase domain at the N terminus. Sometimes it is found independently.
Probab=21.99 E-value=1.6e+02 Score=25.47 Aligned_cols=79 Identities=19% Similarity=0.108 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHhh-----ccc------------cc-eeeEccCCCccHHHHHHHHHHHHHh-CCceeEEeechhHHH
Q psy471 62 LFQLLTKMKETAEAYL-----GHS------------VR-DAVITVPAYFNDAQRQATKDAGAIA-GLNVMRIVNEPTAAA 122 (211)
Q Consensus 62 ~a~iL~~L~~~a~~~~-----g~~------------~~-~vVItVPa~f~~~qR~al~~Aa~~a-Gl~~~~lv~EP~AAA 122 (211)
++..+.+|++.+...- |.. .. ---|-+|+.=--..-..|++++..- .-..+-|+=-|||..
T Consensus 102 ~~~~f~klK~iW~~rdilIVEG~~sR~GvgnDLFdnaksI~rIicPsknAf~~~d~I~~~i~~~~~~~LiLiaLGPTAtV 181 (225)
T PF08759_consen 102 SARYFEKLKQIWKDRDILIVEGEKSRSGVGNDLFDNAKSIKRIICPSKNAFSKYDEILEAIKKYAKDKLILIALGPTATV 181 (225)
T ss_pred HHHHHHHHHHHhCCCcEEEEecCCeecCCCchhhhCccceEEEECCchhhHHHHHHHHHHHHHhCCCcEEEEecCCcchh
Confidence 7889999999987431 211 00 1245667664444444555555544 334566777999999
Q ss_pred HHcccccCCCCCceEEEeecCCC
Q psy471 123 LAYGLDKNLKGERNVKLPKMLEP 145 (211)
Q Consensus 123 l~y~~~~~~~~~~~vLV~D~Ggg 145 (211)
|+|-+.+. ..=++|+|+-
T Consensus 182 LayDL~~~-----G~qaiDiGHi 199 (225)
T PF08759_consen 182 LAYDLSKL-----GYQAIDIGHI 199 (225)
T ss_pred hHHHHHhc-----CCeeEecccc
Confidence 99988754 3456788864
No 185
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=21.97 E-value=90 Score=25.37 Aligned_cols=36 Identities=22% Similarity=0.308 Sum_probs=28.0
Q ss_pred ccCCCccHHHHHHHHHHHHHhCCceeEEeechhHHH
Q psy471 87 TVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAA 122 (211)
Q Consensus 87 tVPa~f~~~qR~al~~Aa~~aGl~~~~lv~EP~AAA 122 (211)
..|..++.-||+.+.=|...+.-+.+-|++||+++.
T Consensus 133 ~~~~~LS~G~~qrl~la~al~~~p~lllLDEPt~~L 168 (214)
T TIGR02673 133 AFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNL 168 (214)
T ss_pred CChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCcccC
Confidence 456778888888877777777777788999999854
No 186
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=21.91 E-value=1e+02 Score=24.95 Aligned_cols=36 Identities=28% Similarity=0.321 Sum_probs=27.3
Q ss_pred ccCCCccHHHHHHHHHHHHHhCCceeEEeechhHHH
Q psy471 87 TVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAA 122 (211)
Q Consensus 87 tVPa~f~~~qR~al~~Aa~~aGl~~~~lv~EP~AAA 122 (211)
.-|..++.-||+.+.-|...+.-+.+-|++||+++.
T Consensus 130 ~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~L 165 (211)
T cd03225 130 RSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGL 165 (211)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence 456778887888777777667667777999999854
No 187
>smart00842 FtsA Cell division protein FtsA. FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains PUBMED:9352931.
Probab=21.84 E-value=1.4e+02 Score=24.04 Aligned_cols=30 Identities=13% Similarity=0.190 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHhhccccceeeEccCCC
Q psy471 62 LFQLLTKMKETAEAYLGHSVRDAVITVPAY 91 (211)
Q Consensus 62 ~a~iL~~L~~~a~~~~g~~~~~vVItVPa~ 91 (211)
++..++.+.+.+++.+|.++.++++++|..
T Consensus 48 ~~~~I~~ai~~ae~~~~~~i~~V~v~i~g~ 77 (187)
T smart00842 48 AARAIREAVEEAERMAGVKIDSVYVGISGR 77 (187)
T ss_pred HHHHHHHHHHHHHHHhCCcccEEEEEEcCC
Confidence 677888888888888898888888888865
No 188
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=21.75 E-value=1.1e+02 Score=24.95 Aligned_cols=37 Identities=22% Similarity=0.269 Sum_probs=28.9
Q ss_pred EccCCCccHHHHHHHHHHHHHhCCceeEEeechhHHH
Q psy471 86 ITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAA 122 (211)
Q Consensus 86 ItVPa~f~~~qR~al~~Aa~~aGl~~~~lv~EP~AAA 122 (211)
-+.|..++.-||+.+.-|...+.-+.+-|++||++..
T Consensus 123 ~~~~~~LS~G~~qrv~ia~al~~~p~llllDEP~~~L 159 (211)
T cd03298 123 KRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAAL 159 (211)
T ss_pred hCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence 3456778888888888777777777888999999853
No 189
>PRK01395 V-type ATP synthase subunit F; Provisional
Probab=21.62 E-value=1.9e+02 Score=21.58 Aligned_cols=48 Identities=27% Similarity=0.303 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHhhccccceeeEccCCCccHHH--HHHHHHHHHHh-CCc
Q psy471 62 LFQLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQ--RQATKDAGAIA-GLN 110 (211)
Q Consensus 62 ~a~iL~~L~~~a~~~~g~~~~~vVItVPa~f~~~q--R~al~~Aa~~a-Gl~ 110 (211)
...+...+.....++ ......++|.+|....... .+.+++..+.| |++
T Consensus 52 te~~a~~i~~~i~~~-~~~~~P~Il~IP~~~g~~~~g~~~i~~~v~kAIG~~ 102 (104)
T PRK01395 52 TEQIAADIPETIERY-DNQVLPAIILIPSNQGSLGIGLSRIQDNVEKAVGQN 102 (104)
T ss_pred cHHHHHHhHHHHHHh-cCCCCCEEEEeCCCCCCccccHHHHHHHHHHHhCcc
Confidence 556666776666555 4557789999999776432 44555555444 544
No 190
>cd00006 PTS_IIA_man PTS_IIA, PTS system, mannose/sorbose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. IIA subunits receive phosphoryl groups from HPr and transfer them to IIB subunits, which in turn phosphorylate the substrate.
Probab=21.59 E-value=3.5e+02 Score=20.16 Aligned_cols=27 Identities=22% Similarity=0.247 Sum_probs=14.0
Q ss_pred HHHHHHHHHhhccccceeeEccCCCcc
Q psy471 67 TKMKETAEAYLGHSVRDAVITVPAYFN 93 (211)
Q Consensus 67 ~~L~~~a~~~~g~~~~~vVItVPa~f~ 93 (211)
+.++..++..+|....-.++..|..-+
T Consensus 13 ~gi~~~~~~i~G~~~~i~~~~~~~~~~ 39 (122)
T cd00006 13 SGLLNSAEMILGEQENVEAIDFPPGES 39 (122)
T ss_pred HHHHHHHHHhcCCCCCeEEEEeCCCCC
Confidence 344555555566544444566665433
No 191
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=21.57 E-value=1.4e+02 Score=25.17 Aligned_cols=27 Identities=33% Similarity=0.225 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHhCCceeEEeechhHHH
Q psy471 94 DAQRQATKDAGAIAGLNVMRIVNEPTAAA 122 (211)
Q Consensus 94 ~~qR~al~~Aa~~aGl~~~~lv~EP~AAA 122 (211)
+.||-++.+|.- --+.+-+.+||+||.
T Consensus 146 qqqrvaiaralm--mkpqvllfdeptaal 172 (242)
T COG4161 146 QQQRVAIARALM--MEPQVLLFDEPTAAL 172 (242)
T ss_pred hhhhHHHHHHHh--cCCcEEeecCccccc
Confidence 566666665542 224556899999875
No 192
>PTZ00288 glucokinase 1; Provisional
Probab=21.48 E-value=92 Score=29.06 Aligned_cols=47 Identities=19% Similarity=0.169 Sum_probs=29.2
Q ss_pred cccceeeEccCCCccHHHH-----------HHHHHHHHHhCCceeEEeechhHHHHHc
Q psy471 79 HSVRDAVITVPAYFNDAQR-----------QATKDAGAIAGLNVMRIVNEPTAAALAY 125 (211)
Q Consensus 79 ~~~~~vVItVPa~f~~~qR-----------~al~~Aa~~aGl~~~~lv~EP~AAAl~y 125 (211)
+.+..+||+||.-....+. +.+---....|+..+.|||+=.|.|++.
T Consensus 89 ~~~~~a~iAvAGPV~~~~~~~~~~~~~~~~~lTNlpw~i~~~~~~~liNDfeA~aygi 146 (405)
T PTZ00288 89 QRVAAGAISVPGPVTGGQLAGPFNNLKGIARLTDYPVELFPPGRSALLNDLEAGAYGV 146 (405)
T ss_pred cCcCeEEEEEeCceeCCEeeccccccccccccCCCCchhcCCCeEEEEEhHHHHhCcc
Confidence 4566678888754433322 1111112237889999999999988764
No 193
>PRK15067 ethanolamine ammonia lyase large subunit; Provisional
Probab=21.31 E-value=1.4e+02 Score=28.34 Aligned_cols=76 Identities=18% Similarity=0.216 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHhhccccceeeEccCCCccHHHHHHHHHHHH----------------HhCCceeEEeechhHHHHHc
Q psy471 62 LFQLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGA----------------IAGLNVMRIVNEPTAAALAY 125 (211)
Q Consensus 62 ~a~iL~~L~~~a~~~~g~~~~~vVItVPa~f~~~qR~al~~Aa~----------------~aGl~~~~lv~EP~AAAl~y 125 (211)
+..+|+.|..... ....+...||+|.= ..|.+++.+-|. .-|++ +.++.|...|+++|
T Consensus 202 ~~~ll~~l~~v~~-~~~IPtQ~CVL~Hv----ttq~~ai~~gaPvdLvFQSiAGTe~aN~~FGi~-l~~L~Ea~~a~~~~ 275 (461)
T PRK15067 202 VSRLLHMLDEVIQ-RFEIPTQSCVLAHV----TTQIEAIERGAPVDLVFQSIAGTEKANKSFGIS-LALLDEAREAALSL 275 (461)
T ss_pred HHHHHHHHHHHHH-HcCCCCcceEeeeh----hhHHHHHHcCCCeeeEEeccccchhhhhhcCcC-HHHHHHHHHHHHHh
Confidence 4556666666554 44667888999775 556666654221 11222 23556666666666
Q ss_pred ccccCCCCCceEEEeecCCCc
Q psy471 126 GLDKNLKGERNVKLPKMLEPL 146 (211)
Q Consensus 126 ~~~~~~~~~~~vLV~D~GggT 146 (211)
+-.. .+.++|-|--|.|+
T Consensus 276 ~rgt---~G~nvmYFETGQGS 293 (461)
T PRK15067 276 GRGT---VGPNVMYFETGQGS 293 (461)
T ss_pred CcCC---cCCceEEEecCccc
Confidence 5432 36889999999987
No 194
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=21.06 E-value=4.5e+02 Score=23.64 Aligned_cols=57 Identities=14% Similarity=0.183 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHhhccccceeeEccCCCccHHHHHHHHHHHHHhCCceeEEeec
Q psy471 61 RLFQLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNE 117 (211)
Q Consensus 61 ~~a~iL~~L~~~a~~~~g~~~~~vVItVPa~f~~~qR~al~~Aa~~aGl~~~~lv~E 117 (211)
.+..+++.+++.........-.-+.+=++++++..+-..+.+++..+|++-+.++|-
T Consensus 190 ~~~~i~~~V~~~~~~~~~~~~~Pv~vKLsP~~~~~~i~~ia~~~~~~GadGi~l~NT 246 (335)
T TIGR01036 190 ELRDLLTAVKQEQDGLRRVHRVPVLVKIAPDLTESDLEDIADSLVELGIDGVIATNT 246 (335)
T ss_pred HHHHHHHHHHHHHHhhhhccCCceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEECC
Confidence 367777777766542211111347777888888778888889999999988888774
No 195
>PF06940 DUF1287: Domain of unknown function (DUF1287); InterPro: IPR009706 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=21.04 E-value=2.1e+02 Score=23.48 Aligned_cols=76 Identities=16% Similarity=0.138 Sum_probs=51.2
Q ss_pred eeeEccC----CCccHHHHHHHHHHHHHhCCceeEEeechhHHHHHc-----ccccCCC---------------------
Q psy471 83 DAVITVP----AYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAY-----GLDKNLK--------------------- 132 (211)
Q Consensus 83 ~vVItVP----a~f~~~qR~al~~Aa~~aGl~~~~lv~EP~AAAl~y-----~~~~~~~--------------------- 132 (211)
...+.-| +.=...=-..+.+|.+.+|++...+|++-.++-++. ++.+..+
T Consensus 19 Y~~~~YP~GDvp~~~GVCTDVViRA~R~~g~DLq~lVheDm~~nf~~Yp~~wgl~~pD~NIDhRRVpNL~~fF~R~g~~L 98 (164)
T PF06940_consen 19 YYSIGYPNGDVPDNTGVCTDVVIRAYRDAGYDLQKLVHEDMKANFSAYPRIWGLKRPDPNIDHRRVPNLEVFFKRHGQSL 98 (164)
T ss_pred eEecCCCCCCCCCCCCccHHHHHHHHHHcCCCHHHHHHHHHHHCHHhCCcccCCCCCCCCCcccccchHHHHHHhcCeec
Confidence 4556666 222223334666777789999999999888877663 2333211
Q ss_pred ---------CCceEEEeecCCCceEEEEEeccchh
Q psy471 133 ---------GERNVKLPKMLEPLLVLTLRKKKKKK 158 (211)
Q Consensus 133 ---------~~~~vLV~D~GggT~Dvsv~~~~~~~ 158 (211)
.+..|+++++.++..-+.|++-++.+
T Consensus 99 ~~~~~~~~~q~GDIVtw~l~~~~~HIgIVSd~r~~ 133 (164)
T PF06940_consen 99 TTDINPEDWQPGDIVTWRLPGGLPHIGIVSDRRSK 133 (164)
T ss_pred cCCCChhhcCCCCEEEEeCCCCCCeEEEEeCCcCC
Confidence 35669999999999999999866543
No 196
>KOG0338|consensus
Probab=21.03 E-value=28 Score=33.93 Aligned_cols=38 Identities=18% Similarity=0.090 Sum_probs=17.7
Q ss_pred eeeEccCCCccHHHHHHHHHHHHHhCCceeEEeechhHHHH
Q psy471 83 DAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAAL 123 (211)
Q Consensus 83 ~vVItVPa~f~~~qR~al~~Aa~~aGl~~~~lv~EP~AAAl 123 (211)
.....+|-.|+..+-.-+..-.+. ....-+++-.+.++
T Consensus 66 ~f~~~~~~~~~s~~~~d~~s~~k~---~a~t~~Deki~k~~ 103 (691)
T KOG0338|consen 66 DFDADVPKDFSSYTSSDGESYLKR---RATTSLDEKIAKAR 103 (691)
T ss_pred eeecCCCcccccchhhhHHHHhhh---ccccchhHHHHHHH
Confidence 355667766665554433322222 22234455555443
No 197
>PF08541 ACP_syn_III_C: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ; InterPro: IPR013747 This domain is found on 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 2.3.1.41 from EC, the enzyme responsible for initiating the chain of reactions of the fatty acid synthase in plants and bacteria. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0008610 lipid biosynthetic process; PDB: 3IL3_A 1ZOW_C 3GWE_B 3GWA_B 1UB7_B 3LED_B 2EBD_A 1HNJ_A 2EFT_B 1HN9_B ....
Probab=20.89 E-value=3e+02 Score=19.07 Aligned_cols=54 Identities=15% Similarity=0.101 Sum_probs=28.2
Q ss_pred HHHHHHHHHHhCCceeEEee----------chhHHHHHccccc-CCCCCceEEEeecCCCceEEE
Q psy471 97 RQATKDAGAIAGLNVMRIVN----------EPTAAALAYGLDK-NLKGERNVKLPKMLEPLLVLT 150 (211)
Q Consensus 97 R~al~~Aa~~aGl~~~~lv~----------EP~AAAl~y~~~~-~~~~~~~vLV~D~GggT~Dvs 150 (211)
+..+...++..|++.-++.. -..-.+|...+.. ..+.++.+|++=+|.|.+--+
T Consensus 21 ~~~~~~~~~~lgi~~~~~~~~~~~~Gn~~sa~~~~~L~~~~~~g~~~~Gd~vl~~~~G~G~~~~~ 85 (90)
T PF08541_consen 21 KKILDSIAKRLGIPPERFPDNLAEYGNTGSASIPINLADALEEGRIKPGDRVLLVGFGAGFSWGA 85 (90)
T ss_dssp HHHHHHHHHHHTS-GGGBE-THHHH-B-GGGHHHHHHHHHHHTTSSCTTEEEEEEEEETTTEEEE
T ss_pred HHHHHHHHHHcCCcHHHHHHHHhccCcchhhhHHHHHHHHHHcCCCCCCCEEEEEEEEhhheeEE
Confidence 34444555667776544432 1111223333332 335788999999999754433
No 198
>PRK13324 pantothenate kinase; Reviewed
Probab=20.74 E-value=2.6e+02 Score=24.33 Aligned_cols=14 Identities=0% Similarity=0.055 Sum_probs=10.9
Q ss_pred CceEEEeecCCCce
Q psy471 134 ERNVKLPKMLEPLL 147 (211)
Q Consensus 134 ~~~vLV~D~GggT~ 147 (211)
++.++|+|||.-+|
T Consensus 123 ~~~~iViD~GTA~T 136 (258)
T PRK13324 123 NKDLLIIDLGTATT 136 (258)
T ss_pred CCCEEEEEcCCceE
Confidence 35699999998664
No 199
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=20.73 E-value=98 Score=25.11 Aligned_cols=36 Identities=28% Similarity=0.362 Sum_probs=27.0
Q ss_pred ccCCCccHHHHHHHHHHHHHhCCceeEEeechhHHH
Q psy471 87 TVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAA 122 (211)
Q Consensus 87 tVPa~f~~~qR~al~~Aa~~aGl~~~~lv~EP~AAA 122 (211)
..|..++.-||+.+.-|...+.-+.+-|++||+++.
T Consensus 132 ~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~L 167 (214)
T cd03292 132 ALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNL 167 (214)
T ss_pred CChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCCCcC
Confidence 346677777777777777667667788999999754
No 200
>PRK13322 pantothenate kinase; Reviewed
Probab=20.71 E-value=2e+02 Score=24.73 Aligned_cols=13 Identities=0% Similarity=-0.176 Sum_probs=9.9
Q ss_pred ceEEEeecCCCce
Q psy471 135 RNVKLPKMLEPLL 147 (211)
Q Consensus 135 ~~vLV~D~GggT~ 147 (211)
+.++|+|+|.-+|
T Consensus 116 ~~~lViD~GTA~T 128 (246)
T PRK13322 116 NACLVIDCGTAVT 128 (246)
T ss_pred CCEEEEEcCCeeE
Confidence 4589999997654
No 201
>TIGR01924 rsbW_low_gc serine-protein kinase RsbW. This model describes the anti-sigma B factor also known as serine-protein kinase RsbW. Sigma B controls the general stress regulon in B subtilis and is activated by cell stresses such as stationary phase and heat shock. RsbW binds to sigma B and prevents formation of the transcription complex at the promoter. RsbV (anti-anti-sigma factor) binds to RsbW to inhibit association with sigma B, however RsbW can phosphorylate RsbV, causing disassociation of the RsbV/RsbW complex. Low ATP level or environmental stress causes the dephosphorylation of RsbV.
Probab=20.58 E-value=1.9e+02 Score=22.79 Aligned_cols=47 Identities=21% Similarity=0.164 Sum_probs=31.4
Q ss_pred ceeeEccCCCcc--HHHHHHHHHHHHHhCCce------eEEeechhHHHHHcccc
Q psy471 82 RDAVITVPAYFN--DAQRQATKDAGAIAGLNV------MRIVNEPTAAALAYGLD 128 (211)
Q Consensus 82 ~~vVItVPa~f~--~~qR~al~~Aa~~aGl~~------~~lv~EP~AAAl~y~~~ 128 (211)
..+.+++|+... ...|.+++..|...|+.. ...+.|-..=|+.|+..
T Consensus 6 ~~~~l~~~a~~~~~~~vr~~~~~~a~~~g~~~~~~~~l~lav~Ea~~Nai~ha~~ 60 (159)
T TIGR01924 6 DTIEMTVPAKPEYVGLIRLTLSGIASRAGYTYDDIEDLKIAVSEACTNAVKHAYK 60 (159)
T ss_pred ceEEEEccCcHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhccC
Confidence 356788888755 366777888888888863 33456666666667654
No 202
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=20.54 E-value=1.2e+02 Score=24.71 Aligned_cols=36 Identities=19% Similarity=0.136 Sum_probs=27.2
Q ss_pred ccCCCccHHHHHHHHHHHHHhCCceeEEeechhHHH
Q psy471 87 TVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAA 122 (211)
Q Consensus 87 tVPa~f~~~qR~al~~Aa~~aGl~~~~lv~EP~AAA 122 (211)
..|..++.-||+.+.-|...+.-+.+-|++||+++.
T Consensus 128 ~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~L 163 (213)
T cd03235 128 RQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGV 163 (213)
T ss_pred CCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccC
Confidence 346678888888777777767667777999999743
No 203
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=20.48 E-value=1e+02 Score=24.65 Aligned_cols=36 Identities=22% Similarity=0.283 Sum_probs=27.0
Q ss_pred ccCCCccHHHHHHHHHHHHHhCCceeEEeechhHHH
Q psy471 87 TVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAA 122 (211)
Q Consensus 87 tVPa~f~~~qR~al~~Aa~~aGl~~~~lv~EP~AAA 122 (211)
..|..++.-+|+.+.-|...+.-+.+-|++||+++.
T Consensus 123 ~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~L 158 (190)
T TIGR01166 123 RPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGL 158 (190)
T ss_pred CChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence 345677777777777776667777788999999743
No 204
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=20.33 E-value=89 Score=26.75 Aligned_cols=34 Identities=32% Similarity=0.290 Sum_probs=24.0
Q ss_pred ccCCCccH--HHHHHHHHHHHHhCCceeEEeechhHHH
Q psy471 87 TVPAYFND--AQRQATKDAGAIAGLNVMRIVNEPTAAA 122 (211)
Q Consensus 87 tVPa~f~~--~qR~al~~Aa~~aGl~~~~lv~EP~AAA 122 (211)
..|++.+. .||-+|.+|. |--+.+-+.+|||.|.
T Consensus 148 ~YP~~LSGGQQQR~aIARaL--ameP~vmLFDEPTSAL 183 (256)
T COG4598 148 AYPAHLSGGQQQRVAIARAL--AMEPEVMLFDEPTSAL 183 (256)
T ss_pred cCccccCchHHHHHHHHHHH--hcCCceEeecCCcccC
Confidence 67888875 5555555554 4446777999999875
No 205
>COG4883 Uncharacterized protein conserved in archaea [Function unknown]
Probab=20.30 E-value=2e+02 Score=26.43 Aligned_cols=21 Identities=33% Similarity=0.436 Sum_probs=15.2
Q ss_pred ceeEEeechhHHHHHcccccC
Q psy471 110 NVMRIVNEPTAAALAYGLDKN 130 (211)
Q Consensus 110 ~~~~lv~EP~AAAl~y~~~~~ 130 (211)
.++.+....+|+|..|-+...
T Consensus 319 ~plsiatga~a~aveyileld 339 (500)
T COG4883 319 SPLSIATGATAAAVEYILELD 339 (500)
T ss_pred CceeeecCcchhHhhhhheec
Confidence 567777788888888766554
No 206
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=20.22 E-value=1e+02 Score=25.02 Aligned_cols=36 Identities=28% Similarity=0.282 Sum_probs=28.6
Q ss_pred ccCCCccHHHHHHHHHHHHHhCCceeEEeechhHHH
Q psy471 87 TVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAA 122 (211)
Q Consensus 87 tVPa~f~~~qR~al~~Aa~~aGl~~~~lv~EP~AAA 122 (211)
+.|..++.-||+.+.-|...+.-+.+-|++||+++.
T Consensus 126 ~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~L 161 (211)
T cd03264 126 KKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGL 161 (211)
T ss_pred CchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence 456778888888888777777778888999999854
No 207
>KOG1834|consensus
Probab=20.15 E-value=49 Score=33.13 Aligned_cols=36 Identities=42% Similarity=0.548 Sum_probs=0.0
Q ss_pred HhhhhcCCcccccCCCCcccCCCCcchhhhhhhhhh
Q psy471 169 EEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEE 204 (211)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (211)
+++.+++++++.+++++...-+..|.+.++|++..+
T Consensus 894 ee~~e~EeeeE~e~~ee~s~~~~~ds~sedEee~~e 929 (952)
T KOG1834|consen 894 EEESEEEEEEETEDEEESSDSDSADSESEDEEEGTE 929 (952)
T ss_pred cccccccccccccccccccccccccCccchhhhccc
Done!