RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy471
(211 letters)
>gnl|CDD|212675 cd10233, HSPA1-2_6-8-like_NBD, Nucleotide-binding domain of
HSPA1-A, -B, -L, HSPA-2, -6, -7, -8, and similar
proteins. This subfamily includes human HSPA1A (70-kDa
heat shock protein 1A, also known as HSP72; HSPA1;
HSP70I; HSPA1B; HSP70-1; HSP70-1A), HSPA1B (70-kDa heat
shock protein 1B, also known as HSPA1A; HSP70-2;
HSP70-1B), and HSPA1L (70-kDa heat shock protein 1-like,
also known as HSP70T; hum70t; HSP70-1L; HSP70-HOM). The
genes for these three HSPA1 proteins map in close
proximity on the major histocompatibility complex (MHC)
class III region on chromosome 6, 6p21.3. This subfamily
also includes human HSPA8 (heat shock 70kDa protein 8,
also known as LAP1; HSC54; HSC70; HSC71; HSP71; HSP73;
NIP71; HSPA10; the HSPA8 gene maps to 11q24.1), human
HSPA2 (70-kDa heat shock protein 2, also known as
HSP70-2; HSP70-3, the HSPA2 gene maps to 14q24.1), human
HSPA6 (also known as heat shock 70kDa protein 6
(HSP70B') gi 94717614, the HSPA6 gene maps to 1q23.3),
human HSPA7 (heat shock 70kDa protein 7 , also known as
HSP70B; the HSPA7 gene maps to 1q23.3) and Saccharmoyces
cerevisiae Stress-Seventy subfamily B/Ssb1p. This
subfamily belongs to the heat shock protein 70 (HSP70)
family of chaperones that assist in protein folding and
assembly and can direct incompetent "client" proteins
towards degradation. Typically, HSP70s have a
nucleotide-binding domain (NBD) and a substrate-binding
domain (SBD). The nucleotide sits in a deep cleft formed
between the two lobes of the NBD. The two subdomains of
each lobe change conformation between ATP-bound,
ADP-bound, and nucleotide-free states. ATP binding opens
up the substrate-binding site; substrate-binding
increases the rate of ATP hydrolysis. HSP70 chaperone
activity is regulated by various co-chaperones: J-domain
proteins and nucleotide exchange factors (NEFs).
Associations of polymorphisms within the MHC-III HSP70
gene locus with longevity, systemic lupus erythematosus,
Meniere's disease, noise-induced hearing loss,
high-altitude pulmonary edema, and coronary heart
disease, have been found. HSPA2 is involved in cancer
cell survival, is required for maturation of male
gametophytes, and is linked to male infertility. The
induction of HSPA6 is a biomarker of cellular stress.
HSPA8 participates in the folding and trafficking of
client proteins to different subcellular compartments,
and in the signal transduction and apoptosis process; it
has been shown to protect cardiomyocytes against
oxidative stress partly through an interaction with
alpha-enolase. S. cerevisiae Ssb1p, is part of the
ribosome-associated complex (RAC), it acts as a
chaperone for nascent polypeptides, and is important for
translation fidelity; Ssb1p is also a [PSI+]
prion-curing factor.
Length = 376
Score = 158 bits (401), Expect = 6e-47
Identities = 59/72 (81%), Positives = 65/72 (90%)
Query: 66 LTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAY 125
LTKMKE AEAYLG +V +AVITVPAYFND+QRQATKDAG IAGLNV+RI+NEPTAAA+AY
Sbjct: 119 LTKMKEIAEAYLGKTVTNAVITVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAY 178
Query: 126 GLDKNLKGERNV 137
GLDK GERNV
Sbjct: 179 GLDKKGGGERNV 190
>gnl|CDD|234715 PRK00290, dnaK, molecular chaperone DnaK; Provisional.
Length = 627
Score = 152 bits (386), Expect = 4e-43
Identities = 53/74 (71%), Positives = 61/74 (82%), Gaps = 2/74 (2%)
Query: 64 QLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAAL 123
+L K+K+ AE YLG V +AVITVPAYFNDAQRQATKDAG IAGL V+RI+NEPTAAAL
Sbjct: 116 MILQKLKKDAEDYLGEKVTEAVITVPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAAAL 175
Query: 124 AYGLDKNLKGERNV 137
AYGLDK KG+ +
Sbjct: 176 AYGLDK--KGDEKI 187
>gnl|CDD|215656 pfam00012, HSP70, Hsp70 protein. Hsp70 chaperones help to fold
many proteins. Hsp70 assisted folding involves repeated
cycles of substrate binding and release. Hsp70 activity
is ATP dependent. Hsp70 proteins are made up of two
regions: the amino terminus is the ATPase domain and the
carboxyl terminus is the substrate binding region.
Length = 598
Score = 146 bits (371), Expect = 4e-41
Identities = 60/74 (81%), Positives = 64/74 (86%), Gaps = 1/74 (1%)
Query: 64 QLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAAL 123
+L K+KETAEAYLG V DAVITVPAYFNDAQRQATKDAG IAGLNV+RI+NEPTAAAL
Sbjct: 116 MVLQKLKETAEAYLGEPVTDAVITVPAYFNDAQRQATKDAGRIAGLNVLRIINEPTAAAL 175
Query: 124 AYGLDKNLKGERNV 137
AYGLDK ERNV
Sbjct: 176 AYGLDKK-DKERNV 188
>gnl|CDD|212681 cd10241, HSPA5-like_NBD, Nucleotide-binding domain of human HSPA5
and similar proteins. This subfamily includes human
HSPA5 (also known as 70-kDa heat shock protein 5,
glucose-regulated protein 78/GRP78, and immunoglobulin
heavy chain-binding protein/BIP, MIF2; the gene encoding
HSPA5 maps to 9q33.3.), Sacchaormyces cerevisiae Kar2p
(also known as Grp78p), and related proteins. This
subfamily belongs to the heat shock protein 70 (HSP70)
family of chaperones that assist in protein folding and
assembly and can direct incompetent "client" proteins
towards degradation. HSPA5 and Kar2p are chaperones of
the endoplasmic reticulum (ER). Typically, HSP70s have a
nucleotide-binding domain (NBD) and a substrate-binding
domain (SBD). The nucleotide sits in a deep cleft formed
between the two lobes of the NBD. The two subdomains of
each lobe change conformation between ATP-bound,
ADP-bound, and nucleotide-free states. ATP binding opens
up the substrate-binding site; substrate-binding
increases the rate of ATP hydrolysis. HSP70 chaperone
activity is regulated by various co-chaperones: J-domain
proteins and nucleotide exchange factors (NEFs).
Multiple ER DNAJ domain proteins have been identified
and may exist in distinct complexes with HSPA5 in
various locations in the ER, for example DNAJC3-p58IPK
in the lumen. HSPA5-NEFs include SIL1 and an atypical
HSP70 family protein HYOU1/ORP150. The ATPase activity
of Kar2p is stimulated by the NEFs: Sil1p and Lhs1p.
Length = 374
Score = 142 bits (361), Expect = 5e-41
Identities = 57/72 (79%), Positives = 64/72 (88%), Gaps = 1/72 (1%)
Query: 66 LTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAY 125
LTKMKE AEAYLG V+ AV+TVPAYFNDAQRQATKDAG IAGLNV+RI+NEPTAAA+AY
Sbjct: 121 LTKMKEIAEAYLGKKVKHAVVTVPAYFNDAQRQATKDAGTIAGLNVVRIINEPTAAAIAY 180
Query: 126 GLDKNLKGERNV 137
GLDK GE+N+
Sbjct: 181 GLDKK-GGEKNI 191
>gnl|CDD|212683 cd11733, HSPA9-like_NBD, Nucleotide-binding domain of human HSPA9,
Escherichia coli DnaK, and similar proteins. This
subgroup includes human mitochondrial HSPA9 (also known
as 70-kDa heat shock protein 9, CSA; MOT; MOT2; GRP75;
PBP74; GRP-75; HSPA9B; MTHSP75; the gene encoding HSPA9
maps to 5q31.1), Escherichia coli DnaK, and
Saccharomyces cerevisiae Stress-Seventy subfamily
C/Ssc1p (also called mtHSP70, Endonuclease SceI 75 kDa
subunit). It belongs to the heat shock protein 70
(HSP70) family of chaperones that assist in protein
folding and assembly, and can direct incompetent
"client" proteins towards degradation. Typically, HSP70s
have a nucleotide-binding domain (NBD) and a
substrate-binding domain (SBD). The nucleotide sits in a
deep cleft formed between the two lobes of the NBD. The
two subdomains of each lobe change conformation between
ATP-bound, ADP-bound, and nucleotide-free states. ATP
binding opens up the substrate-binding site;
substrate-binding increases the rate of ATP hydrolysis.
Hsp70 chaperone activity is regulated by various
co-chaperones: J-domain proteins and nucleotide exchange
factors (NEFs); for Escherichia coli DnaK, these are the
DnaJ and GrpE, respectively. HSPA9 is involved in
multiple processses including mitochondrial import,
antigen processing, control of cellular proliferation
and differentiation, and regulation of glucose
responses. During glucose deprivation-induced cellular
stress, HSPA9 plays an important role in the suppression
of apoptosis by inhibiting a conformational change in
Bax that allow the release of cytochrome c. DnaK
modulates the heat shock response in Escherichia coli.
It protects E. coli from protein carbonylation, an
irreversible oxidative modification that increases
during organism aging and bacterial growth arrest. Under
severe thermal stress, it functions as part of a
bi-chaperone system: the DnaK system and the
ring-forming AAA+ chaperone ClpB (Hsp104) system, to
promote cell survival. DnaK has also been shown to
cooperate with GroEL and the ribosome-associated
Escherichia coli Trigger Factor in the proper folding of
cytosolic proteins. S. cerevisiae Ssc1p is the major
HSP70 chaperone of the mitochondrial matrix, promoting
translocation of proteins from the cytosol, across the
inner membrane, to the matrix, and their subsequent
folding. Ssc1p interacts with Tim44, a peripheral inner
membrane protein associated with the TIM23 protein
translocase. It is also a subunit of the endoSceI
site-specific endoDNase and is required for full
endoSceI activity. Ssc1p plays roles in the import of
Yfh1p, a nucleus-encoded mitochondrial protein involved
in iron homeostasis (and a homolog of human frataxin,
implicated in the neurodegenerative disease,
Friedreich's ataxia). Ssc1 also participates in
translational regulation of cytochrome c oxidase (COX)
biogenesis by interacting with Mss51 and
Mss51-containing complexes.
Length = 377
Score = 140 bits (354), Expect = 4e-40
Identities = 54/64 (84%), Positives = 60/64 (93%)
Query: 66 LTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAY 125
L KMKETAEAYLG V++AVITVPAYFND+QRQATKDAG IAGLNV+R++NEPTAAALAY
Sbjct: 120 LMKMKETAEAYLGKPVKNAVITVPAYFNDSQRQATKDAGQIAGLNVLRVINEPTAAALAY 179
Query: 126 GLDK 129
GLDK
Sbjct: 180 GLDK 183
>gnl|CDD|212676 cd10234, HSPA9-Ssq1-like_NBD, Nucleotide-binding domain of human
HSPA9 and similar proteins. This subfamily includes
human mitochondrial HSPA9 (also known as 70-kDa heat
shock protein 9, CSA; MOT; MOT2; GRP75; PBP74; GRP-75;
HSPA9B; MTHSP75; the gene encoding HSPA9 maps to
5q31.1), Escherichia coli DnaK, Saccharomyces cerevisiae
Stress-seventy subfamily Q protein 1/Ssq1p (also called
Ssc2p, Ssh1p, mtHSP70 homolog), and S. cerevisiae
Stress-Seventy subfamily C/Ssc1p (also called mtHSP70,
Endonuclease SceI 75 kDa subunit). It belongs to the
heat shock protein 70 (HSP70) family of chaperones that
assist in protein folding and assembly, and can direct
incompetent "client" proteins towards degradation.
Typically, HSP70s have a nucleotide-binding domain (NBD)
and a substrate-binding domain (SBD). The nucleotide
sits in a deep cleft formed between the two lobes of the
NBD. The two subdomains of each lobe change conformation
between ATP-bound, ADP-bound, and nucleotide-free
states. ATP binding opens up the substrate-binding site;
substrate-binding increases the rate of ATP hydrolysis.
Hsp70 chaperone activity is regulated by various
co-chaperones: J-domain proteins and nucleotide exchange
factors (NEFs); for Escherichia coli DnaK, these are the
DnaJ and GrpE, respectively.
Length = 376
Score = 138 bits (350), Expect = 2e-39
Identities = 52/66 (78%), Positives = 58/66 (87%)
Query: 64 QLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAAL 123
+L K+KE AEAYLG V +AVITVPAYFND+QRQATKDAG IAGL V+RI+NEPTAAAL
Sbjct: 117 MILQKLKEDAEAYLGEKVTEAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAAL 176
Query: 124 AYGLDK 129
AYGLDK
Sbjct: 177 AYGLDK 182
>gnl|CDD|240227 PTZ00009, PTZ00009, heat shock 70 kDa protein; Provisional.
Length = 653
Score = 139 bits (351), Expect = 3e-38
Identities = 57/73 (78%), Positives = 65/73 (89%)
Query: 65 LLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALA 124
+L KMKE AEAYLG V+DAV+TVPAYFND+QRQATKDAG IAGLNV+RI+NEPTAAA+A
Sbjct: 124 VLQKMKEIAEAYLGKQVKDAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIA 183
Query: 125 YGLDKNLKGERNV 137
YGLDK GE+NV
Sbjct: 184 YGLDKKGDGEKNV 196
>gnl|CDD|233830 TIGR02350, prok_dnaK, chaperone protein DnaK. Members of this
family are the chaperone DnaK, of the DnaK-DnaJ-GrpE
chaperone system. All members of the seed alignment were
taken from completely sequenced bacterial or archaeal
genomes and (except for Mycoplasma sequence) found
clustered with other genes of this systems. This model
excludes DnaK homologs that are not DnaK itself, such as
the heat shock cognate protein HscA (TIGR01991).
However, it is not designed to distinguish among DnaK
paralogs in eukaryotes. Note that a number of dnaK genes
have shadow ORFs in the same reverse (relative to dnaK)
reading frame, a few of which have been assigned
glutamate dehydrogenase activity. The significance of
this observation is unclear; lengths of such shadow ORFs
are highly variable as if the presumptive protein
product is not conserved [Protein fate, Protein folding
and stabilization].
Length = 595
Score = 135 bits (341), Expect = 5e-37
Identities = 54/72 (75%), Positives = 62/72 (86%)
Query: 64 QLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAAL 123
+L K+K+ AEAYLG V +AVITVPAYFNDAQRQATKDAG IAGL V+RI+NEPTAAAL
Sbjct: 113 MILQKLKKDAEAYLGEKVTEAVITVPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAAAL 172
Query: 124 AYGLDKNLKGER 135
AYGLDK+ K E+
Sbjct: 173 AYGLDKSKKDEK 184
>gnl|CDD|212667 cd10170, HSP70_NBD, Nucleotide-binding domain of the HSP70 family.
HSP70 (70-kDa heat shock protein) family chaperones
assist in protein folding and assembly and can direct
incompetent "client" proteins towards degradation.
Typically, HSP70s have a nucleotide-binding domain (NBD)
and a substrate-binding domain (SBD). The nucleotide
sits in a deep cleft formed between the two lobes of the
NBD. The two subdomains of each lobe change conformation
between ATP-bound, ADP-bound, and nucleotide-free
states. ATP binding opens up the substrate-binding site;
substrate-binding increases the rate of ATP hydrolysis.
HSP70 chaperone activity is regulated by various
co-chaperones: J-domain proteins and nucleotide exchange
factors (NEFs). Some HSP70 family members are not
chaperones but instead, function as NEFs to remove ADP
from their HSP70 chaperone partners during the ATP
hydrolysis cycle, some may function as both chaperones
and NEFs.
Length = 369
Score = 127 bits (322), Expect = 2e-35
Identities = 51/73 (69%), Positives = 61/73 (83%)
Query: 65 LLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALA 124
+L K+KE AEAYLG V +AVITVPAYFNDAQR+ATK+A IAGLNV+R++NEPTAAALA
Sbjct: 115 ILKKLKEDAEAYLGEPVTEAVITVPAYFNDAQREATKEAAEIAGLNVVRLINEPTAAALA 174
Query: 125 YGLDKNLKGERNV 137
YGLDK + R +
Sbjct: 175 YGLDKKDEKGRTI 187
>gnl|CDD|212678 cd10236, HscA_like_NBD, Nucleotide-binding domain of HscA and
similar proteins. Escherichia coli HscA (heat shock
cognate protein A, also called Hsc66), belongs to the
heat shock protein 70 (HSP70) family of chaperones that
assist in protein folding and assembly and can direct
incompetent "client" proteins towards degradation.
Typically, HSP70s have a nucleotide-binding domain (NBD)
and a substrate-binding domain (SBD). The nucleotide
sits in a deep cleft formed between the two lobes of the
NBD. The two subdomains of each lobe change conformation
between ATP-bound, ADP-bound, and nucleotide-free
states. ATP binding opens up the substrate-binding site;
substrate-binding increases the rate of ATP hydrolysis.
HSP70 chaperone activity is regulated by various
co-chaperones: J-domain proteins and nucleotide exchange
factors (NEFs). HscA's partner J-domain protein is HscB;
it does not appear to require a NEF, and has been shown
to be induced by cold-shock. The HscA-HscB
chaperone/co-chaperone pair is involved in [Fe-S]
cluster assembly.
Length = 355
Score = 126 bits (318), Expect = 6e-35
Identities = 47/69 (68%), Positives = 57/69 (82%)
Query: 65 LLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALA 124
+L +KE AE LG ++ AVITVPAYF+DAQRQATKDA +AGLNV+R++NEPTAAALA
Sbjct: 113 ILKALKERAEKSLGGEIKGAVITVPAYFDDAQRQATKDAARLAGLNVLRLLNEPTAAALA 172
Query: 125 YGLDKNLKG 133
YGLDK +G
Sbjct: 173 YGLDKKKEG 181
>gnl|CDD|212677 cd10235, HscC_like_NBD, Nucleotide-binding domain of Escherichia
coli HscC and similar proteins. This subfamily
includes Escherichia coli HscC (also called heat shock
cognate protein C, Hsc62, or YbeW) and the the putative
DnaK-like protein Escherichia coli ECs0689. It belongs
to the heat shock protein 70 (Hsp70) family of
chaperones that assist in protein folding and assembly
and can direct incompetent "client" proteins towards
degradation. Typically, Hsp70s have a nucleotide-binding
domain (NBD) and a substrate-binding domain (SBD). The
nucleotide sits in a deep cleft formed between the two
lobes of the NBD. The two subdomains of each lobe change
conformation between ATP-bound, ADP-bound, and
nucleotide-free states. ATP binding opens up the
substrate-binding site; substrate-binding increases the
rate of ATP hydrolysis. Hsp70 chaperone activity is
regulated by various co-chaperones: J-domain proteins
and nucleotide exchange factors (NEFs). Two genes in the
vicinity of the HscC gene code for potential
cochaperones: J-domain containing proteins, DjlB/YbeS
and DjlC/YbeV. HscC and its co-chaperone partners may
play a role in the SOS DNA damage response. HscC does
not appear to require a NEF.
Length = 339
Score = 124 bits (315), Expect = 2e-34
Identities = 44/66 (66%), Positives = 52/66 (78%)
Query: 65 LLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALA 124
+L +KE AEAYLG V +AVI+VPAYFND QR+ATK AG +AGL V R++NEPTAAALA
Sbjct: 91 VLRSLKEDAEAYLGEPVTEAVISVPAYFNDEQRKATKRAGELAGLKVERLINEPTAAALA 150
Query: 125 YGLDKN 130
YGL
Sbjct: 151 YGLHDK 156
>gnl|CDD|212684 cd11734, Ssq1_like_NBD, Nucleotide-binding domain of Saccharomyces
cerevisiae Ssq1 and similar proteins. Ssq1p (also
called Stress-seventy subfamily Q protein 1, Ssc2p,
Ssh1p, mtHSP70 homolog) belongs to the heat shock
protein 70 (HSP70) family of chaperones that assist in
protein folding and assembly, and can direct incompetent
"client" proteins towards degradation. Typically, HSP70s
have a nucleotide-binding domain (NBD) and a
substrate-binding domain (SBD). The nucleotide sits in a
deep cleft formed between the two lobes of the NBD. The
two subdomains of each lobe change conformation between
ATP-bound, ADP-bound, and nucleotide-free states. ATP
binding opens up the substrate-binding site;
substrate-binding increases the rate of ATP hydrolysis.
Hsp70 chaperone activity is regulated by various
co-chaperones: J-domain proteins and nucleotide exchange
factors (NEFs). S. cerevisiae Ssq1p is a mitochondrial
chaperone that is involved in iron-sulfur (Fe/S) center
biogenesis. Ssq1p plays a role in the maturation of
Yfh1p, a nucleus-encoded mitochondrial protein involved
in iron homeostasis (and a homolog of human frataxin,
implicated in the neurodegenerative disease,
Friedreich's ataxia).
Length = 373
Score = 123 bits (310), Expect = 1e-33
Identities = 50/66 (75%), Positives = 59/66 (89%)
Query: 65 LLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALA 124
+L K+K+TAEAYLG V +AVITVPAYFND+QRQATKDAG +AGL V+RI+NEPTAAALA
Sbjct: 118 VLKKLKKTAEAYLGKRVDEAVITVPAYFNDSQRQATKDAGTLAGLKVLRIINEPTAAALA 177
Query: 125 YGLDKN 130
YG+DK
Sbjct: 178 YGIDKR 183
>gnl|CDD|240403 PTZ00400, PTZ00400, DnaK-type molecular chaperone; Provisional.
Length = 663
Score = 125 bits (316), Expect = 2e-33
Identities = 52/66 (78%), Positives = 61/66 (92%)
Query: 65 LLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALA 124
+L KMKETAE+YLG V+ AVITVPAYFND+QRQATKDAG IAGL+V+RI+NEPTAAALA
Sbjct: 158 VLEKMKETAESYLGRKVKQAVITVPAYFNDSQRQATKDAGKIAGLDVLRIINEPTAAALA 217
Query: 125 YGLDKN 130
+G+DKN
Sbjct: 218 FGMDKN 223
>gnl|CDD|184039 PRK13411, PRK13411, molecular chaperone DnaK; Provisional.
Length = 653
Score = 122 bits (308), Expect = 3e-32
Identities = 51/65 (78%), Positives = 56/65 (86%)
Query: 65 LLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALA 124
+L K+K+ AEAYLG V AVITVPAYF DAQRQATKDAG IAGL V+RI+NEPTAAALA
Sbjct: 117 ILQKLKQDAEAYLGEPVTQAVITVPAYFTDAQRQATKDAGTIAGLEVLRIINEPTAAALA 176
Query: 125 YGLDK 129
YGLDK
Sbjct: 177 YGLDK 181
>gnl|CDD|223520 COG0443, DnaK, Molecular chaperone [Posttranslational modification,
protein turnover, chaperones].
Length = 579
Score = 121 bits (306), Expect = 3e-32
Identities = 56/72 (77%), Positives = 61/72 (84%), Gaps = 2/72 (2%)
Query: 66 LTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAY 125
LTK+KE AEAYLG V DAVITVPAYFNDAQRQATKDA IAGLNV+R++NEPTAAALAY
Sbjct: 105 LTKLKEDAEAYLGEKVTDAVITVPAYFNDAQRQATKDAARIAGLNVLRLINEPTAAALAY 164
Query: 126 GLDKNLKGERNV 137
GLDK E+ V
Sbjct: 165 GLDK--GKEKTV 174
>gnl|CDD|235360 PRK05183, hscA, chaperone protein HscA; Provisional.
Length = 616
Score = 119 bits (300), Expect = 4e-31
Identities = 43/68 (63%), Positives = 54/68 (79%)
Query: 66 LTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAY 125
L +++ AE LG + AVITVPAYF+DAQRQATKDA +AGLNV+R++NEPTAAA+AY
Sbjct: 134 LKALRQRAEETLGGELDGAVITVPAYFDDAQRQATKDAARLAGLNVLRLLNEPTAAAIAY 193
Query: 126 GLDKNLKG 133
GLD +G
Sbjct: 194 GLDSGQEG 201
>gnl|CDD|184038 PRK13410, PRK13410, molecular chaperone DnaK; Provisional.
Length = 668
Score = 118 bits (298), Expect = 7e-31
Identities = 46/65 (70%), Positives = 53/65 (81%)
Query: 65 LLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALA 124
+L K+ + A YLG V AVITVPAYFND+QRQAT+DAG IAGL V RI+NEPTAAALA
Sbjct: 119 ILRKLADDASRYLGEPVTGAVITVPAYFNDSQRQATRDAGRIAGLEVERILNEPTAAALA 178
Query: 125 YGLDK 129
YGLD+
Sbjct: 179 YGLDR 183
>gnl|CDD|233673 TIGR01991, HscA, Fe-S protein assembly chaperone HscA. The Heat
Shock Cognate proteins HscA and HscB act together as
chaperones. HscA resembles DnaK but belongs in a
separate clade. The apparent function is to aid assembly
of iron-sulfur cluster proteins. Homologs from Buchnera
and Wolbachia are clearly in the same clade but are
highly derived and score lower than some examples of
DnaK [Protein fate, Protein folding and stabilization].
Length = 599
Score = 113 bits (286), Expect = 2e-29
Identities = 46/70 (65%), Positives = 58/70 (82%)
Query: 64 QLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAAL 123
++L K+K+ AE LG + AVITVPAYF+DAQRQATKDA +AGLNV+R++NEPTAAA+
Sbjct: 112 EILKKLKQRAEESLGGDLVGAVITVPAYFDDAQRQATKDAARLAGLNVLRLLNEPTAAAV 171
Query: 124 AYGLDKNLKG 133
AYGLDK +G
Sbjct: 172 AYGLDKASEG 181
>gnl|CDD|214360 CHL00094, dnaK, heat shock protein 70.
Length = 621
Score = 114 bits (286), Expect = 2e-29
Identities = 49/66 (74%), Positives = 56/66 (84%)
Query: 64 QLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAAL 123
Q+L K+ E A YLG +V AVITVPAYFND+QRQATKDAG IAGL V+RI+NEPTAA+L
Sbjct: 118 QVLRKLVEDASKYLGETVTQAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAASL 177
Query: 124 AYGLDK 129
AYGLDK
Sbjct: 178 AYGLDK 183
>gnl|CDD|212670 cd10228, HSPA4_like_NDB, Nucleotide-binding domain of 105/110 kDa
heat shock proteins including HSPA4 and similar
proteins. This subgroup includes the human proteins,
HSPA4 (also known as 70-kDa heat shock protein 4, APG-2,
HS24/P52, hsp70 RY, and HSPH2; the human HSPA4 gene maps
to 5q31.1), HSPA4L (also known as 70-kDa heat shock
protein 4-like, APG-1, HSPH3, and OSP94; the human
HSPA4L gene maps to 4q28), and HSPH1 (also known as heat
shock 105kDa/110kDa protein 1, HSP105; HSP105A; HSP105B;
NY-CO-25; the human HSPH1 gene maps to 13q12.3),
Saccharomyces cerevisiae Sse1p and Sse2p, and a sea
urchin sperm receptor. It belongs to the 105/110 kDa
heat shock protein (HSP105/110) subfamily of the
HSP70-like family, and includes proteins believed to
function generally as co-chaperones of HSP70 chaperones,
acting as nucleotide exchange factors (NEFs), to remove
ADP from their HSP70 chaperone partners during the ATP
hydrolysis cycle. HSP70 chaperones assist in protein
folding and assembly, and can direct incompetent
"client" proteins towards degradation. Like HSP70
chaperones, HSP105/110s have an N-terminal
nucleotide-binding domain (NBD) and a C-terminal
substrate-binding domain (SBD). For HSP70 chaperones,
the nucleotide sits in a deep cleft formed between the
two lobes of the NBD. The two subdomains of each lobe
change conformation between ATP-bound, ADP-bound, and
nucleotide-free states. ATP binding opens up the
substrate-binding site; substrate-binding increases the
rate of ATP hydrolysis. Hsp70 chaperone activity is also
regulated by J-domain proteins.
Length = 381
Score = 109 bits (276), Expect = 1e-28
Identities = 44/84 (52%), Positives = 54/84 (64%), Gaps = 7/84 (8%)
Query: 65 LLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALA 124
LLTK+KE AE L V D VI+VP+YF DAQR+A DA IAGLN +R++NE TA ALA
Sbjct: 120 LLTKLKEIAEKALKGKVTDCVISVPSYFTDAQRRALLDAAQIAGLNCLRLMNETTATALA 179
Query: 125 YGLDKNLKGERNVKLPKMLEPLLV 148
YG+ K LP+ +P V
Sbjct: 180 YGIYKT-------DLPEEEKPRNV 196
>gnl|CDD|140213 PTZ00186, PTZ00186, heat shock 70 kDa precursor protein;
Provisional.
Length = 657
Score = 108 bits (271), Expect = 2e-27
Identities = 52/65 (80%), Positives = 59/65 (90%)
Query: 65 LLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALA 124
+L KMKETAE +LGH V +AV+T PAYFNDAQRQATKDAG IAGLNV+R+VNEPTAAALA
Sbjct: 144 VLEKMKETAENFLGHKVSNAVVTCPAYFNDAQRQATKDAGTIAGLNVIRVVNEPTAAALA 203
Query: 125 YGLDK 129
YG+DK
Sbjct: 204 YGMDK 208
>gnl|CDD|215618 PLN03184, PLN03184, chloroplast Hsp70; Provisional.
Length = 673
Score = 102 bits (256), Expect = 3e-25
Identities = 43/66 (65%), Positives = 52/66 (78%)
Query: 64 QLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAAL 123
Q+L K+ + A +L V AVITVPAYFND+QR ATKDAG IAGL V+RI+NEPTAA+L
Sbjct: 155 QVLRKLVDDASKFLNDKVTKAVITVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAASL 214
Query: 124 AYGLDK 129
AYG +K
Sbjct: 215 AYGFEK 220
>gnl|CDD|212672 cd10230, HYOU1-like_NBD, Nucleotide-binding domain of human HYOU1
and similar proteins. This subgroup includes human
HYOU1 (also known as human hypoxia up-regulated 1,
GRP170; HSP12A; ORP150; GRP-170; ORP-150; the human
HYOU1 gene maps to11q23.1-q23.3) and Saccharomyces
cerevisiae Lhs1p (also known as Cer1p, SsI1). Mammalian
HYOU1 functions as a nucleotide exchange factor (NEF)
for HSPA5 (alos known as BiP, Grp78 or HspA5) and may
also function as a HSPA5-independent chaperone. S.
cerevisiae Lhs1p, does not have a detectable endogenous
ATPase activity like canonical HSP70s, but functions as
a NEF for Kar2p; it's interaction with Kar2p is
stimulated by nucleotide-binding. In addition, Lhs1p has
a nucleotide-independent holdase activity that prevents
heat-induced aggregation of proteins in vitro. This
subgroup belongs to the 105/110 kDa heat shock protein
(HSP105/110) subfamily of the HSP70-like family.
HSP105/110s are believed to function generally as
co-chaperones of HSP70 chaperones, acting as NEFs, to
remove ADP from their HSP70 chaperone partners during
the ATP hydrolysis cycle. HSP70 chaperones assist in
protein folding and assembly, and can direct incompetent
"client" proteins towards degradation. Like HSP70
chaperones, HSP105/110s have an N-terminal
nucleotide-binding domain (NBD) and a C-terminal
substrate-binding domain (SBD). For HSP70 chaperones,
the nucleotide sits in a deep cleft formed between the
two lobes of the NBD. The two subdomains of each lobe
change conformation between ATP-bound, ADP-bound, and
nucleotide-free states. ATP binding opens up the
substrate-binding site; substrate-binding increases the
rate of ATP hydrolysis. Hsp70 chaperone activity is also
regulated by J-domain proteins.
Length = 388
Score = 86.5 bits (215), Expect = 5e-20
Identities = 35/74 (47%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 66 LTKMKETAEAYLG-HSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALA 124
L K+ AE + V+D VITVP YF AQRQA DA +AGLNV+ +VN+ TAAAL
Sbjct: 119 LNYAKKLAEEHAKEAPVKDVVITVPPYFTQAQRQALLDAAELAGLNVLALVNDGTAAALN 178
Query: 125 YGLDKNLKGERNVK 138
Y LD+ + +
Sbjct: 179 YALDRRFENNKPQY 192
>gnl|CDD|212679 cd10237, HSPA13-like_NBD, Nucleotide-binding domain of human HSPA13
and similar proteins. Human HSPA13 (also called 70-kDa
heat shock protein 13, STCH, "stress 70 protein
chaperone, microsome-associated, 60kD", "stress 70
protein chaperone, microsome-associated, 60kDa"; the
gene encoding HSPA13 maps to 21q11.1) belongs to the
heat shock protein 70 (HSP70) family of chaperones that
assist in protein folding and assembly and can direct
incompetent "client" proteins towards degradation.
Typically, HSP70s have a nucleotide-binding domain (NBD)
and a substrate-binding domain (SBD). The nucleotide
sits in a deep cleft formed between the two lobes of the
NBD. The two subdomains of each lobe change conformation
between ATP-bound, ADP-bound, and nucleotide-free
states. ATP binding opens up the substrate-binding site;
substrate-binding increases the rate of ATP hydrolysis.
HSP70 chaperone activity is regulated by various
co-chaperones: J-domain proteins and nucleotide exchange
factors (NEFs). STCH contains an NBD but lacks an SBD.
STCH may function to regulate cell proliferation and
survival, and modulate the TRAIL-mediated cell death
pathway. The HSPA13 gene is a candidate stomach cancer
susceptibility gene; a mutation in the NBD coding region
of HSPA13 has been identified in stomach cancer cells.
The NBD of HSPA13 interacts with the ubiquitin-like
proteins Chap1 and Chap2, implicating HSPA13 in
regulating cell cycle and cell death events. HSPA13 is
induced by the Ca2+ ionophore A23187.
Length = 417
Score = 86.4 bits (214), Expect = 6e-20
Identities = 38/66 (57%), Positives = 50/66 (75%)
Query: 64 QLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAAL 123
+L+ K+++ AE YLG V AVI+VPA F++ QR AT A +AGL V+R++NEPTAAAL
Sbjct: 141 RLILKLRKMAEKYLGTPVGKAVISVPAEFDEKQRNATVKAANLAGLEVLRVINEPTAAAL 200
Query: 124 AYGLDK 129
AYGL K
Sbjct: 201 AYGLHK 206
>gnl|CDD|212680 cd10238, HSPA14-like_NBD, Nucleotide-binding domain of human HSPA14
and similar proteins. Human HSPA14 (also known as
70-kDa heat shock protein 14, HSP70L1, HSP70-4; the gene
encoding HSPA14 maps to 10p13), is ribosome-associated
and belongs to the heat shock protein 70 (HSP70) family
of chaperones that assist in protein folding and
assembly, and can direct incompetent "client" proteins
towards degradation. Typically, HSP70s have a
nucleotide-binding domain (NBD) and a substrate-binding
domain (SBD). The nucleotide sits in a deep cleft formed
between the two lobes of the NBD. The two subdomains of
each lobe change conformation between ATP-bound,
ADP-bound, and nucleotide-free states. ATP binding opens
up the substrate-binding site; substrate-binding
increases the rate of ATP hydrolysis. HSP70 chaperone
activity is regulated by various co-chaperones: J-domain
proteins and nucleotide exchange factors (NEFs). HSPA14
interacts with the J-protein MPP11 to form the mammalian
ribosome-associated complex (mRAC). HSPA14 participates
in a pathway along with Nijmegen breakage syndrome 1
(NBS1, also known as p85 or nibrin), heat shock
transcription factor 4b (HSF4b), and HSPA4 (belonging to
a different subfamily), that induces tumor migration,
invasion, and transformation. HSPA14 is a potent T
helper cell (Th1) polarizing adjuvant that contributes
to antitumor immune responses.
Length = 375
Score = 84.4 bits (209), Expect = 3e-19
Identities = 34/75 (45%), Positives = 52/75 (69%)
Query: 65 LLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALA 124
+ KMKE A++ LG +D VITVP YF++ Q+ A ++A AG NV+RI++EP+AAALA
Sbjct: 119 IFKKMKEIAQSALGSDSKDVVITVPVYFSEKQKLALREAAEEAGFNVLRIIHEPSAAALA 178
Query: 125 YGLDKNLKGERNVKL 139
YG+ ++ ++ L
Sbjct: 179 YGIGQDSPTGKSYVL 193
>gnl|CDD|234955 PRK01433, hscA, chaperone protein HscA; Provisional.
Length = 595
Score = 82.6 bits (204), Expect = 2e-18
Identities = 36/70 (51%), Positives = 46/70 (65%)
Query: 64 QLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAAL 123
++ +K AE L ++ AVITVPA+FNDA R A IAG V+R++ EPTAAA
Sbjct: 124 EIFIYLKNQAEEQLKTNITKAVITVPAHFNDAARGEVMLAAKIAGFEVLRLIAEPTAAAY 183
Query: 124 AYGLDKNLKG 133
AYGL+KN KG
Sbjct: 184 AYGLNKNQKG 193
>gnl|CDD|212687 cd11737, HSPA4_NBD, Nucleotide-binding domain of HSPA4. Human
HSPA4 (also known as 70-kDa heat shock protein 4, APG-2,
HS24/P52, hsp70 RY, and HSPH2; the human HSPA4 gene maps
to 5q31.1) responds to acidic pH stress, is involved in
the radioadaptive response, is required for normal
spermatogenesis and is overexpressed in hepatocellular
carcinoma. It participates in a pathway along with NBS1
(Nijmegen breakage syndrome 1, also known as p85 or
nibrin), heat shock transcription factor 4b (HDF4b), and
HSPA14 (belonging to a different HSP70 subfamily) that
induces tumor migration, invasion, and transformation.
HSPA4 expression in sperm was increased in men with
oligozoospermia, especially in those with varicocele.
HSPA4 belongs to the 105/110 kDa heat shock protein
(HSP105/110) subfamily of the HSP70-like family.
HSP105/110s are believed to function generally as
co-chaperones of HSP70 chaperones, acting as nucleotide
exchange factors (NEFs), to remove ADP from their HSP70
chaperone partners during the ATP hydrolysis cycle.
HSP70 chaperones assist in protein folding and assembly,
and can direct incompetent "client" proteins towards
degradation. Like HSP70 chaperones, HSP105/110s have an
N-terminal nucleotide-binding domain (NBD) and a
C-terminal substrate-binding domain (SBD). For HSP70
chaperones, the nucleotide sits in a deep cleft formed
between the two lobes of the NBD. The two subdomains of
each lobe change conformation between ATP-bound,
ADP-bound, and nucleotide-free states. ATP binding opens
up the substrate-binding site; substrate-binding
increases the rate of ATP hydrolysis. Hsp70 chaperone
activity is also regulated by J-domain proteins.
Length = 383
Score = 76.6 bits (188), Expect = 1e-16
Identities = 36/65 (55%), Positives = 49/65 (75%)
Query: 65 LLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALA 124
LLTK+KETAE+ L V D V++VP ++ DA+R++ DA IAGLN +R++NE TA ALA
Sbjct: 120 LLTKLKETAESALKKPVVDCVVSVPCFYTDAERRSVMDATQIAGLNCLRLMNETTAVALA 179
Query: 125 YGLDK 129
YG+ K
Sbjct: 180 YGIYK 184
>gnl|CDD|212689 cd11739, HSPH1_NBD, Nucleotide-binding domain of HSPH1. Human
HSPH1 (also known as heat shock 105kDa/110kDa protein 1,
HSP105; HSP105A; HSP105B; NY-CO-25; the human HSPH1 gene
maps to 13q12.3) suppresses the aggregation of denatured
proteins caused by heat shock in vitro, and may
substitute for HSP70 family proteins to suppress the
aggregation of denatured proteins in cells under severe
stress. It reduces the protein aggregation and
cytotoxicity associated with Polyglutamine (PolyQ)
diseases, including Huntington's disease, which are a
group of inherited neurodegenerative disorders sharing
the characteristic feature of having insoluble protein
aggregates in neurons. The expression of HSPH1 is
elevated in various malignant tumors, including
malignant melanoma, and there is a direct correlation
between HSPH1 expression and B-cell non-Hodgkin
lymphomas (B-NHLs) aggressiveness and proliferation.
HSPH1 belongs to the 105/110 kDa heat shock protein
(HSP105/110) subfamily of the HSP70-like family.
HSP105/110s are believed to function generally as
co-chaperones of HSP70 chaperones, acting as nucleotide
exchange factors (NEFs), to remove ADP from their HSP70
chaperone partners during the ATP hydrolysis cycle.
HSP70 chaperones assist in protein folding and assembly,
and can direct incompetent "client" proteins towards
degradation. Like HSP70 chaperones, HSP105/110s have an
N-terminal nucleotide-binding domain (NBD) and a
C-terminal substrate-binding domain (SBD). For HSP70
chaperones, the nucleotide sits in a deep cleft formed
between the two lobes of the NBD. The two subdomains of
each lobe change conformation between ATP-bound,
ADP-bound, and nucleotide-free states. ATP binding opens
up the substrate-binding site; substrate-binding
increases the rate of ATP hydrolysis. Hsp70 chaperone
activity is also regulated by J-domain proteins.
Length = 383
Score = 75.8 bits (186), Expect = 3e-16
Identities = 35/65 (53%), Positives = 47/65 (72%)
Query: 65 LLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALA 124
LLTK+KETAE L V D VI+VP++F DA+R++ DA I GLN +R++N+ TA AL
Sbjct: 120 LLTKLKETAENNLKKPVTDCVISVPSFFTDAERRSVLDAAQIVGLNCLRLMNDMTAVALN 179
Query: 125 YGLDK 129
YG+ K
Sbjct: 180 YGIYK 184
>gnl|CDD|212674 cd10232, ScSsz1p_like_NBD, Nucleotide-binding domain of
Saccharmomyces cerevisiae Ssz1pp and similar proteins.
Saccharomyces cerevisiae Ssz1p (also known as
/Pdr13p/YHR064C) belongs to the heat shock protein 70
(HSP70) family of chaperones that assist in protein
folding and assembly and can direct incompetent "client"
proteins towards degradation. Typically, HSP70s have a
nucleotide-binding domain (NBD) and a substrate-binding
domain (SBD). The nucleotide sits in a deep cleft formed
between the two lobes of the NBD. The two subdomains of
each lobe change conformation between ATP-bound,
ADP-bound, and nucleotide-free states. ATP binding opens
up the substrate-binding site; substrate-binding
increases the rate of ATP hydrolysis. HSP70 chaperone
activity is regulated by various co-chaperones: J-domain
proteins and nucleotide exchange factors (NEFs). Some
family members are not chaperones but rather, function
as NEFs for their Hsp70 partners, while other family
members function as both chaperones and NEFs. Ssz1 does
not function as a chaperone; it facilitates the
interaction between the HSP70 Ssb protein and its
partner J-domain protein Zuo1 (also known as zuotin) on
the ribosome. Ssz1 is found in a stable heterodimer
(called RAC, ribosome associated complex) with Zuo1.
Zuo1 can only stimulate the ATPase activity of Ssb, when
it is in complex with Ssz1. Ssz1 binds ATP but neither
nucleotide-binding, hydrolysis, or its SBD, is needed
for its in vivo function.
Length = 386
Score = 75.5 bits (186), Expect = 4e-16
Identities = 28/66 (42%), Positives = 41/66 (62%)
Query: 65 LLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALA 124
L ++KE AE +LG V AV++VP +F+D Q +A A AGL V++++ EP AA LA
Sbjct: 121 FLRRLKEAAEDFLGKKVAGAVLSVPTWFSDEQTEALVKAAEAAGLPVLQLIPEPAAALLA 180
Query: 125 YGLDKN 130
Y +
Sbjct: 181 YDAGEP 186
>gnl|CDD|212688 cd11738, HSPA4L_NBD, Nucleotide-binding domain of HSPA4L. Human
HSPA4L (also known as 70-kDa heat shock protein 4-like,
APG-1, HSPH3, and OSP94; the human HSPA4L gene maps to
4q28) is expressed ubiquitously and predominantly in the
testis. It is required for normal spermatogenesis and
plays a role in osmotolerance. HSPA4L belongs to the
105/110 kDa heat shock protein (HSP105/110) subfamily of
the HSP70-like family. HSP105/110s are believed to
function generally as co-chaperones of HSP70 chaperones,
acting as nucleotide exchange factors (NEFs), to remove
ADP from their HSP70 chaperone partners during the ATP
hydrolysis cycle. HSP70 chaperones assist in protein
folding and assembly, and can direct incompetent
"client" proteins towards degradation. Like HSP70
chaperones, HSP105/110s have an N-terminal
nucleotide-binding domain (NBD) and a C-terminal
substrate-binding domain (SBD). For HSP70 chaperones,
the nucleotide sits in a deep cleft formed between the
two lobes of the NBD. The two subdomains of each lobe
change conformation between ATP-bound, ADP-bound, and
nucleotide-free states. ATP binding opens up the
substrate-binding site; substrate-binding increases the
rate of ATP hydrolysis. Hsp70 chaperone activity is also
regulated by J-domain proteins.
Length = 383
Score = 70.4 bits (172), Expect = 2e-14
Identities = 33/65 (50%), Positives = 47/65 (72%)
Query: 65 LLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALA 124
LL K+KET+E L V D VI++P++F DA+R++ A +AGLN +R++NE TA ALA
Sbjct: 120 LLAKLKETSENALKKPVADCVISIPSFFTDAERRSVMAAAQVAGLNCLRLMNETTAVALA 179
Query: 125 YGLDK 129
YG+ K
Sbjct: 180 YGIYK 184
>gnl|CDD|212682 cd11732, HSP105-110_like_NBD, Nucleotide-binding domain of 105/110
kDa heat shock proteins including HSPA4, HYOU1, and
similar proteins. This subfamily include the human
proteins, HSPA4 (also known as 70-kDa heat shock protein
4, APG-2, HS24/P52, hsp70 RY, and HSPH2; the human HSPA4
gene maps to 5q31.1), HSPA4L (also known as 70-kDa heat
shock protein 4-like, APG-1, HSPH3, and OSP94; the human
HSPA4L gene maps to 4q28), and HSPH1 (also known as heat
shock 105kDa/110kDa protein 1, HSP105; HSP105A; HSP105B;
NY-CO-25; the human HSPH1 gene maps to 13q12.3), HYOU1
(also known as human hypoxia up-regulated 1, GRP170;
HSP12A; ORP150; GRP-170; ORP-150; the human HYOU1 gene
maps to11q23.1-q23.3), Saccharomyces cerevisiae Sse1p,
Sse2p, and Lhs1p, and a sea urchin sperm receptor. It
belongs to the 105/110 kDa heat shock protein
(HSP105/110) subfamily of the HSP70-like family, and
includes proteins believed to function generally as
co-chaperones of HSP70 chaperones, acting as nucleotide
exchange factors (NEFs), to remove ADP from their HSP70
chaperone partners during the ATP hydrolysis cycle.
HSP70 chaperones assist in protein folding and assembly,
and can direct incompetent "client" proteins towards
degradation. Like HSP70 chaperones, HSP105/110s have an
N-terminal nucleotide-binding domain (NBD) and a
C-terminal substrate-binding domain (SBD). For HSP70
chaperones, the nucleotide sits in a deep cleft formed
between the two lobes of the NBD. The two subdomains of
each lobe change conformation between ATP-bound,
ADP-bound, and nucleotide-free states. ATP binding opens
up the substrate-binding site; substrate-binding
increases the rate of ATP hydrolysis. HSP70 chaperone
activity is also regulated by J-domain proteins.
Length = 377
Score = 65.4 bits (159), Expect = 1e-12
Identities = 28/74 (37%), Positives = 42/74 (56%)
Query: 65 LLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALA 124
+ K+K+T + ++ D I VP ++ + QR DA IAGLN +RIVN+ TAA ++
Sbjct: 118 FIDKVKDTVKQDTKANITDVCIAVPPWYTEEQRYNIADAARIAGLNPVRIVNDVTAAGVS 177
Query: 125 YGLDKNLKGERNVK 138
YG+ K E K
Sbjct: 178 YGIFKTDLPEGEEK 191
>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger. [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 1096
Score = 60.0 bits (145), Expect = 1e-10
Identities = 27/48 (56%), Positives = 34/48 (70%)
Query: 164 EEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
E + E +++E+G + GG+ E EEEEEEEEEEEEEEEEEEEE
Sbjct: 840 ENQGEAKQDEKGVDGGGGSDGGDSEEEEEEEEEEEEEEEEEEEEEEEE 887
Score = 56.5 bits (136), Expect = 2e-09
Identities = 33/54 (61%), Positives = 38/54 (70%), Gaps = 4/54 (7%)
Query: 162 KKEEEEEEEEEEEGGE--EEEEG--GGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
K E E+E E GE ++E+G GGG +GG EEEEEEEEEEEEEEEEEEE
Sbjct: 829 KDETGEQELNAENQGEAKQDEKGVDGGGGSDGGDSEEEEEEEEEEEEEEEEEEE 882
Score = 52.3 bits (125), Expect = 4e-08
Identities = 30/72 (41%), Positives = 39/72 (54%), Gaps = 17/72 (23%)
Query: 157 KKKKKKKEEEEEEEEEEEGGEEEEE-----------------GGGGEEEGGGEEEEEEEE 199
K + + + E + ++ E + E+E GGGG + G EEEEEEEE
Sbjct: 812 KDEHEGQSETQADDTEVKDETGEQELNAENQGEAKQDEKGVDGGGGSDGGDSEEEEEEEE 871
Query: 200 EEEEEEEEEEEE 211
EEEEEEEEEEEE
Sbjct: 872 EEEEEEEEEEEE 883
Score = 46.1 bits (109), Expect = 5e-06
Identities = 28/43 (65%), Positives = 29/43 (67%), Gaps = 12/43 (27%)
Query: 164 EEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEE 206
+ EEEEEEEEE EEEEE EEEEEEEEEEEE EE
Sbjct: 862 DSEEEEEEEEE--EEEEE----------EEEEEEEEEEEENEE 892
Score = 39.6 bits (92), Expect = 8e-04
Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
Query: 157 KKKKKKKEEEEEEEEEEEGGEEEEEG-----GGGEEEGGGEEEEEEEEEEEEEEEEEEE 210
+ ++ E E+E E E GE E EG GE+EG GE E +E + + E E EE E
Sbjct: 658 ENGEESGGEAEQEGETETKGENESEGEIPAERKGEQEGEGEIEAKEADHKGETEAEEVE 716
Score = 39.6 bits (92), Expect = 8e-04
Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Query: 156 KKKKKKKKEEEEEEEEEEEGGEEEEEG----GGGEEEGGGEEEEEEEEEEEEEEEEEEE 210
++K +++ E E E +E + GE E E G E EG +E E E EE EE E+E E
Sbjct: 688 ERKGEQEGEGEIEAKEADHKGETEAEEVEHEGETEAEGTEDEGEIETGEEGEEVEDEGE 746
Score = 39.2 bits (91), Expect = 0.001
Identities = 27/88 (30%), Positives = 34/88 (38%), Gaps = 29/88 (32%)
Query: 153 KKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEE----------------- 195
K + + K + E E E E++ E + E + E E E
Sbjct: 792 KGDEGAEGKVEHEGETEAGEKDEHEGQSETQADDTEVKDETGEQELNAENQGEAKQDEKG 851
Query: 196 ------------EEEEEEEEEEEEEEEE 211
EEEEEEEEEEEEEEEE
Sbjct: 852 VDGGGGSDGGDSEEEEEEEEEEEEEEEE 879
Score = 38.8 bits (90), Expect = 0.001
Identities = 24/57 (42%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 157 KKKKKKKEEEEEEEEEEEGGEEE--EEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
K+ K E E EE E E E E E+ G E GEE E+E E E E + E E E
Sbjct: 702 KEADHKGETEAEEVEHEGETEAEGTEDEGEIETGEEGEEVEDEGEGEAEGKHEVETE 758
Score = 38.8 bits (90), Expect = 0.001
Identities = 23/48 (47%), Positives = 27/48 (56%)
Query: 164 EEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
E+E E E E GEE E+ G GE EG E E E + +E E E E E E
Sbjct: 726 TEDEGEIETGEEGEEVEDEGEGEAEGKHEVETEGDRKETEHEGETEAE 773
Score = 38.8 bits (90), Expect = 0.002
Identities = 23/46 (50%), Positives = 28/46 (60%), Gaps = 17/46 (36%)
Query: 159 KKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEE 204
+++++EEEEEEEEEEE EEEEEEEEEE EE
Sbjct: 864 EEEEEEEEEEEEEEEE-----------------EEEEEEEEEENEE 892
Score = 38.4 bits (89), Expect = 0.002
Identities = 20/53 (37%), Positives = 26/53 (49%)
Query: 159 KKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
++ EE E E EG EE GG E+EG E + E E E E E + E+
Sbjct: 641 TGERTGEEGERPTEAEGENGEESGGEAEQEGETETKGENESEGEIPAERKGEQ 693
Score = 37.7 bits (87), Expect = 0.003
Identities = 18/54 (33%), Positives = 26/54 (48%)
Query: 158 KKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
+ ++ E E+E E E E E G E GE+E E E E +E + + E E
Sbjct: 658 ENGEESGGEAEQEGETETKGENESEGEIPAERKGEQEGEGEIEAKEADHKGETE 711
Score = 36.9 bits (85), Expect = 0.006
Identities = 21/54 (38%), Positives = 28/54 (51%)
Query: 158 KKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
++K ++E E E E +E + E E E EG E E E+E E E EE EE
Sbjct: 688 ERKGEQEGEGEIEAKEADHKGETEAEEVEHEGETEAEGTEDEGEIETGEEGEEV 741
Score = 36.5 bits (84), Expect = 0.007
Identities = 19/58 (32%), Positives = 29/58 (50%)
Query: 153 KKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEE 210
++ ++ ++ E E E EE G E E+ G E +G E E E E + E+E E E
Sbjct: 641 TGERTGEEGERPTEAEGENGEESGGEAEQEGETETKGENESEGEIPAERKGEQEGEGE 698
Score = 36.5 bits (84), Expect = 0.009
Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Query: 152 RKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGG---GEEEGGGEEEEEEEEEEEEEEEEE 208
++ ++ ++ E E E EE GGE E+EG GE E GE E + E+E E E E
Sbjct: 641 TGERTGEEGERPTEAEGENGEESGGEAEQEGETETKGENESEGEIPAERKGEQEGEGEIE 700
Query: 209 EEE 211
+E
Sbjct: 701 AKE 703
Score = 35.0 bits (80), Expect = 0.022
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 154 KKKKKKKKKKEEEEEEEEEEEGGEEEEEGG-GGEEEGGGEEEEEEEEEEEEEEEEEEE 210
K + + + + E + E+E EG E +E GE E E E E E E E+E E E
Sbjct: 676 KGENESEGEIPAERKGEQEGEGEIEAKEADHKGETEAEEVEHEGETEAEGTEDEGEIE 733
Score = 34.6 bits (79), Expect = 0.031
Identities = 19/59 (32%), Positives = 29/59 (49%)
Query: 153 KKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
++ + +++ E E + E E EG E G E EG E +E + + E E EE E E
Sbjct: 661 EESGGEAEQEGETETKGENESEGEIPAERKGEQEGEGEIEAKEADHKGETEAEEVEHEG 719
Score = 34.2 bits (78), Expect = 0.041
Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Query: 153 KKKKKKKKKKKEEEEEEEEEEEGGEEEEEG----GGGEEEGGGEEEEEEEEEEEEEEEEE 208
K + + + +KE E E E E EG E+E+EG G E G E E + E E E E E
Sbjct: 752 KHEVETEGDRKETEHEGETEAEGKEDEDEGEIQAGEDGEMKGDEGAEGKVEHEGETEAGE 811
Query: 209 EEE 211
++E
Sbjct: 812 KDE 814
Score = 34.2 bits (78), Expect = 0.043
Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 161 KKKEEEEEEEEEEEGGEE-EEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
+ +E E+E E E EG E E EG E E GE E E +E+E+E E + E+
Sbjct: 737 EGEEVEDEGEGEAEGKHEVETEGDRKETEHEGETEAEGKEDEDEGEIQAGED 788
Score = 34.2 bits (78), Expect = 0.045
Identities = 22/48 (45%), Positives = 27/48 (56%)
Query: 164 EEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
E EE EE E+ GE E EG E G +E E E E E E +E+E+E
Sbjct: 733 ETGEEGEEVEDEGEGEAEGKHEVETEGDRKETEHEGETEAEGKEDEDE 780
Score = 33.8 bits (77), Expect = 0.061
Identities = 16/26 (61%), Positives = 24/26 (92%)
Query: 156 KKKKKKKKEEEEEEEEEEEGGEEEEE 181
++++++++EEEEEEEEEEE EEEEE
Sbjct: 864 EEEEEEEEEEEEEEEEEEEEEEEEEE 889
Score = 33.4 bits (76), Expect = 0.082
Identities = 21/59 (35%), Positives = 30/59 (50%)
Query: 153 KKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
K + + ++ + E E E E E+ GE E G E E GE E E + E E E + +E E
Sbjct: 707 KGETEAEEVEHEGETEAEGTEDEGEIETGEEGEEVEDEGEGEAEGKHEVETEGDRKETE 765
Score = 33.0 bits (75), Expect = 0.099
Identities = 15/28 (53%), Positives = 25/28 (89%)
Query: 154 KKKKKKKKKKEEEEEEEEEEEGGEEEEE 181
++++++++++EEEEEEEEEEE EEE E
Sbjct: 864 EEEEEEEEEEEEEEEEEEEEEEEEEENE 891
Score = 33.0 bits (75), Expect = 0.12
Identities = 15/29 (51%), Positives = 26/29 (89%)
Query: 153 KKKKKKKKKKKEEEEEEEEEEEGGEEEEE 181
+++++++++++EEEEEEEEEEE EE EE
Sbjct: 864 EEEEEEEEEEEEEEEEEEEEEEEEEENEE 892
Score = 32.7 bits (74), Expect = 0.13
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 6/66 (9%)
Query: 152 RKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGG------GEEEGGGEEEEEEEEEEEEEE 205
+ +K+ + + E E E +E+E+ GE + G G E E E E E++E E
Sbjct: 757 TEGDRKETEHEGETEAEGKEDEDEGEIQAGEDGEMKGDEGAEGKVEHEGETEAGEKDEHE 816
Query: 206 EEEEEE 211
+ E +
Sbjct: 817 GQSETQ 822
Score = 32.7 bits (74), Expect = 0.16
Identities = 21/53 (39%), Positives = 28/53 (52%)
Query: 159 KKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
+ + E E E E+E E EEG E+EG GE E + E E E + +E E E
Sbjct: 715 VEHEGETEAEGTEDEGEIETGEEGEEVEDEGEGEAEGKHEVETEGDRKETEHE 767
Score = 32.3 bits (73), Expect = 0.21
Identities = 21/49 (42%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 164 EEEEEEEEEEEGGEEEEEGGGGEE-EGGGEEEEEEEEEEEEEEEEEEEE 211
E E EE EE E E E G E E G+ +E E E E E E +E+E+
Sbjct: 731 EIETGEEGEEVEDEGEGEAEGKHEVETEGDRKETEHEGETEAEGKEDED 779
Score = 31.9 bits (72), Expect = 0.27
Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 162 KKEEEEEEEEEEEGGEEE-EEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
K++E+E E + E GE + +EG G+ E GE E E++E E + E + ++
Sbjct: 775 KEDEDEGEIQAGEDGEMKGDEGAEGKVEHEGETEAGEKDEHEGQSETQADD 825
Score = 31.1 bits (70), Expect = 0.40
Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Query: 164 EEEEEEEEEEEG---GEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
EE EE E+E EG G+ E E G +E E E E E +E+E+E E +
Sbjct: 736 EEGEEVEDEGEGEAEGKHEVETEGDRKETEHEGETEAEGKEDEDEGEIQAG 786
>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit;
Provisional.
Length = 482
Score = 54.5 bits (132), Expect = 7e-09
Identities = 48/158 (30%), Positives = 82/158 (51%), Gaps = 19/158 (12%)
Query: 58 HSPRLFQLLTKMKETAEAYLGHSVRDAVIT-VPAYFNDAQRQATKDAGAIAGLNVMRIV- 115
P ++LL+K KE E RD++ + + ++R+ ++ L + I+
Sbjct: 330 QPPSYWRLLSKTKEKRE------TRDSIAKKIAEKLHTSKRKVRREV-----LPFLSIIF 378
Query: 116 --NEPTAAALAYGLDKNLKGERNVKLPKMLEPLLVLTLRKKKKKKKKKKKEEEEEEEEEE 173
N AA LA L+ + + K + + K +KK++++KKE++++ +
Sbjct: 379 KHNPELAARLAAFLELTEEEIEFLTGSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGK 438
Query: 174 EGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
+ EEEEE E+E EE+EEEEEE EEE+EEEEE+
Sbjct: 439 KKEEEEEE----EKEKKEEEKEEEEEEAEEEKEEEEEK 472
Score = 30.7 bits (70), Expect = 0.51
Identities = 16/33 (48%), Positives = 26/33 (78%)
Query: 152 RKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGG 184
++++K+KK++++EEEEEE EEE EEEE+
Sbjct: 443 EEEEEKEKKEEEKEEEEEEAEEEKEEEEEKKKK 475
>gnl|CDD|217927 pfam04147, Nop14, Nop14-like family. Emg1 and Nop14 are novel
proteins whose interaction is required for the
maturation of the 18S rRNA and for 40S ribosome
production.
Length = 809
Score = 45.4 bits (108), Expect = 9e-06
Identities = 19/48 (39%), Positives = 32/48 (66%)
Query: 164 EEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
EE+EEEEE+ E+EE+ EE + + +EEE+EE+E+ ++E+
Sbjct: 320 EEDEEEEEDGVDDEDEEDDDDDLEEEEEDVDLSDEEEDEEDEDSDDED 367
Score = 45.4 bits (108), Expect = 1e-05
Identities = 18/49 (36%), Positives = 35/49 (71%)
Query: 163 KEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
+EE+ ++E+EE +++ E + + EEE+EE+E+ ++E++EEEEE
Sbjct: 325 EEEDGVDDEDEEDDDDDLEEEEEDVDLSDEEEDEEDEDSDDEDDEEEEE 373
Score = 45.4 bits (108), Expect = 1e-05
Identities = 18/48 (37%), Positives = 33/48 (68%)
Query: 164 EEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
E+ ++E+EE+ ++ EE + EE+EE+E+ ++E++EEEEEE
Sbjct: 327 EDGVDDEDEEDDDDDLEEEEEDVDLSDEEEDEEDEDSDDEDDEEEEEE 374
Score = 43.4 bits (103), Expect = 4e-05
Identities = 18/48 (37%), Positives = 33/48 (68%)
Query: 164 EEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
E+EEEEE+ + +EE++ EEE + +EEE+EE+E+ ++E++
Sbjct: 321 EDEEEEEDGVDDEDEEDDDDDLEEEEEDVDLSDEEEDEEDEDSDDEDD 368
Score = 43.1 bits (102), Expect = 6e-05
Identities = 21/48 (43%), Positives = 36/48 (75%)
Query: 164 EEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
++E+EE++++ EEEEE +E EE+E+ ++E++EEEEEEE+E
Sbjct: 330 VDDEDEEDDDDDLEEEEEDVDLSDEEEDEEDEDSDDEDDEEEEEEEKE 377
Score = 43.1 bits (102), Expect = 6e-05
Identities = 19/49 (38%), Positives = 33/49 (67%)
Query: 163 KEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
+ EE+EEEEE+ +E+EE + E E+ + +EEE+EE+E+ ++E
Sbjct: 318 QGEEDEEEEEDGVDDEDEEDDDDDLEEEEEDVDLSDEEEDEEDEDSDDE 366
Score = 41.5 bits (98), Expect = 2e-04
Identities = 18/46 (39%), Positives = 34/46 (73%)
Query: 164 EEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEE 209
E+EE+++++ E EE+ + EE+ E+ ++E++EEEEEEE+E+
Sbjct: 333 EDEEDDDDDLEEEEEDVDLSDEEEDEEDEDSDDEDDEEEEEEEKEK 378
Score = 41.1 bits (97), Expect = 2e-04
Identities = 16/46 (34%), Positives = 33/46 (71%)
Query: 163 KEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEE 208
++EE+++++ EE E+ + E+E + ++E++EEEEEEE+E+
Sbjct: 333 EDEEDDDDDLEEEEEDVDLSDEEEDEEDEDSDDEDDEEEEEEEKEK 378
Score = 40.4 bits (95), Expect = 4e-04
Identities = 19/47 (40%), Positives = 35/47 (74%)
Query: 164 EEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEE 210
+E+EE+++++ EEE+ EEE +E+ ++E++EEEEEEE+E+
Sbjct: 332 DEDEEDDDDDLEEEEEDVDLSDEEEDEEDEDSDDEDDEEEEEEEKEK 378
Score = 38.1 bits (89), Expect = 0.002
Identities = 20/71 (28%), Positives = 44/71 (61%), Gaps = 10/71 (14%)
Query: 151 LRKKKKKKKKKKKEEEEEEEEEEE----------GGEEEEEGGGGEEEGGGEEEEEEEEE 200
L+K + ++ ++ + EEE++EEEE+ E +++ G +G +EEEEE+
Sbjct: 271 LKKLEAERLRRMRGEEEDDEEEEDSKESADDLDDEFEPDDDDNFGLGQGEEDEEEEEDGV 330
Query: 201 EEEEEEEEEEE 211
++E+EE+++++
Sbjct: 331 DDEDEEDDDDD 341
Score = 36.5 bits (85), Expect = 0.009
Identities = 14/49 (28%), Positives = 30/49 (61%)
Query: 163 KEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
++++ + +EEEE G ++E +++++ EEEEE+ + +EEE
Sbjct: 308 PDDDDNFGLGQGEEDEEEEEDGVDDEDEEDDDDDLEEEEEDVDLSDEEE 356
Score = 35.7 bits (83), Expect = 0.012
Identities = 18/43 (41%), Positives = 28/43 (65%)
Query: 169 EEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
+ EE EEEE+G E+E +++ EEEEE+ + +EEE+E
Sbjct: 316 LGQGEEDEEEEEDGVDDEDEEDDDDDLEEEEEDVDLSDEEEDE 358
Score = 34.6 bits (80), Expect = 0.033
Identities = 18/66 (27%), Positives = 35/66 (53%), Gaps = 7/66 (10%)
Query: 153 KKKKKKKKKKKEEEE-----EEEEEEEGGEEEEEGGGGEEEGGGEEEEEEE--EEEEEEE 205
K++ ++ KK E E EEE++ EE+ + + + E ++++ + EE+
Sbjct: 263 LAKEEAERLKKLEAERLRRMRGEEEDDEEEEDSKESADDLDDEFEPDDDDNFGLGQGEED 322
Query: 206 EEEEEE 211
EEEEE+
Sbjct: 323 EEEEED 328
Score = 34.2 bits (79), Expect = 0.045
Identities = 20/48 (41%), Positives = 32/48 (66%), Gaps = 10/48 (20%)
Query: 164 EEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
+ EEEEE+ + EEE+E E+E+ ++E++EEEEEEE+E+
Sbjct: 341 DLEEEEEDVDLSDEEEDE----------EDEDSDDEDDEEEEEEEKEK 378
Score = 33.0 bits (76), Expect = 0.092
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 14/75 (18%)
Query: 151 LRKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEE--------------GGGEEEEE 196
L K++ ++ KK + E EE +EEEE + G G+ EE+
Sbjct: 263 LAKEEAERLKKLEAERLRRMRGEEEDDEEEEDSKESADDLDDEFEPDDDDNFGLGQGEED 322
Query: 197 EEEEEEEEEEEEEEE 211
EEEEE+ ++E+EE+
Sbjct: 323 EEEEEDGVDDEDEED 337
Score = 30.0 bits (68), Expect = 1.1
Identities = 17/47 (36%), Positives = 30/47 (63%), Gaps = 10/47 (21%)
Query: 161 KKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEE 207
++EEE+ + +EE EE+E+ ++E++EEEEEEE+E+
Sbjct: 342 LEEEEEDVDLSDEEEDEEDED----------SDDEDDEEEEEEEKEK 378
Score = 29.6 bits (67), Expect = 1.5
Identities = 10/35 (28%), Positives = 20/35 (57%)
Query: 169 EEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEE 203
++ +++ + GGGE++EE+EEE+ E
Sbjct: 136 DDFDDDDLGDLASDDRAAHFGGGEDDEEDEEEQPE 170
Score = 27.3 bits (61), Expect = 8.2
Identities = 10/45 (22%), Positives = 25/45 (55%)
Query: 164 EEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEE 208
+ ++++ + + GGGE++ EEE+ E ++ ++E +E
Sbjct: 137 DFDDDDLGDLASDDRAAHFGGGEDDEEDEEEQPERKKSKKEVMKE 181
>gnl|CDD|218734 pfam05758, Ycf1, Ycf1. The chloroplast genomes of most higher
plants contain two giant open reading frames designated
ycf1 and ycf2. Although the function of Ycf1 is unknown,
it is known to be an essential gene.
Length = 832
Score = 44.6 bits (106), Expect = 1e-05
Identities = 20/55 (36%), Positives = 29/55 (52%)
Query: 157 KKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
KK K+ E EE EEE + E E G ++E G EE+ EE+E+ ++ E
Sbjct: 224 KKLKETSETEEREEETDVEIETTSETKGTKQEQEGSTEEDPSLFSEEKEDPDKTE 278
Score = 43.5 bits (103), Expect = 4e-05
Identities = 19/56 (33%), Positives = 30/56 (53%)
Query: 156 KKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
KK K+ + EE EEE + E E G +E+ G EE+ EE+E+ ++ E+
Sbjct: 224 KKLKETSETEEREEETDVEIETTSETKGTKQEQEGSTEEDPSLFSEEKEDPDKTED 279
Score = 42.7 bits (101), Expect = 7e-05
Identities = 20/57 (35%), Positives = 31/57 (54%)
Query: 155 KKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
KK K+ + EE EEE + E E +G E+EG EE+ EE+E+ ++ E+
Sbjct: 224 KKLKETSETEEREEETDVEIETTSETKGTKQEQEGSTEEDPSLFSEEKEDPDKTEDL 280
Score = 38.1 bits (89), Expect = 0.002
Identities = 16/72 (22%), Positives = 37/72 (51%)
Query: 139 LPKMLEPLLVLTLRKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEE 198
K L+ R+++ + + E + ++E+EG EE+ EE+ ++ E+ +
Sbjct: 222 FTKKLKETSETEEREEETDVEIETTSETKGTKQEQEGSTEEDPSLFSEEKEDPDKTEDLD 281
Query: 199 EEEEEEEEEEEE 210
+ E +E+++EE
Sbjct: 282 KLEILKEKKDEE 293
Score = 36.1 bits (84), Expect = 0.009
Identities = 18/68 (26%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 145 PLLVLTLRKKKKKKKKKKKEEE--EEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEE 202
P T + K+ + ++++EE E E E G ++E+ G EE+ EE+E+ ++
Sbjct: 218 PSPFFTKKLKETSETEEREEETDVEIETTSETKGTKQEQEGSTEEDPSLFSEEKEDPDKT 277
Query: 203 EEEEEEEE 210
E+ ++ E
Sbjct: 278 EDLDKLEI 285
Score = 35.4 bits (82), Expect = 0.016
Identities = 18/72 (25%), Positives = 35/72 (48%), Gaps = 11/72 (15%)
Query: 151 LRKKKKKKKKKKKEEEEEEEE-----------EEEGGEEEEEGGGGEEEGGGEEEEEEEE 199
KK K+ + ++ EEE + E +E+ G EE+ EE ++ E+ +
Sbjct: 222 FTKKLKETSETEEREEETDVEIETTSETKGTKQEQEGSTEEDPSLFSEEKEDPDKTEDLD 281
Query: 200 EEEEEEEEEEEE 211
+ E +E+++EE
Sbjct: 282 KLEILKEKKDEE 293
>gnl|CDD|212673 cd10231, YegD_like, Escherichia coli YegD, a putative chaperone
protein, and related proteins. This bacterial subfamily
includes the uncharacterized Escherichia coli YegD. It
belongs to the heat shock protein 70 (HSP70) family of
chaperones that assist in protein folding and assembly
and can direct incompetent "client" proteins towards
degradation. Typically, HSP70s have a nucleotide-binding
domain (NBD) and a substrate-binding domain (SBD). The
nucleotide sits in a deep cleft formed between the two
lobes of the NBD. The two subdomains of each lobe change
conformation between ATP-bound, ADP-bound, and
nucleotide-free states. ATP binding opens up the
substrate-binding site; substrate-binding increases the
rate of ATP hydrolysis. YegD lacks the SBD. HSP70
chaperone activity is regulated by various
co-chaperones: J-domain proteins and nucleotide exchange
factors (NEFs). Some family members are not chaperones
but instead, function as NEFs for their Hsp70 partners,
other family members function as both chaperones and
NEFs.
Length = 415
Score = 44.4 bits (106), Expect = 2e-05
Identities = 23/67 (34%), Positives = 29/67 (43%), Gaps = 7/67 (10%)
Query: 66 LTKMKETAEAYLGHSVRDAVITVPAYFNDAQ----RQATKDAGAI---AGLNVMRIVNEP 118
L ++K+ AEA LG + VI P +F QA A AG + EP
Sbjct: 101 LAELKQRAEAALGAEIDRVVIGRPVHFVGDDEAADAQAEARLRAAARAAGFKDVEFQYEP 160
Query: 119 TAAALAY 125
AAAL Y
Sbjct: 161 IAAALDY 167
>gnl|CDD|217829 pfam03985, Paf1, Paf1. Members of this family are components of
the RNA polymerase II associated Paf1 complex. The Paf1
complex functions during the elongation phase of
transcription in conjunction with Spt4-Spt5 and
Spt16-Pob3i.
Length = 431
Score = 44.3 bits (105), Expect = 2e-05
Identities = 17/50 (34%), Positives = 26/50 (52%)
Query: 162 KKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
+ +E+E+EEEE+ E EEE G EE G + E+ E + + E
Sbjct: 369 EVDEDEDEEEEQRSDEHEEEEGEDSEEEGSQSREDGSSESSSDVGSDSES 418
Score = 37.8 bits (88), Expect = 0.002
Identities = 14/53 (26%), Positives = 24/53 (45%)
Query: 159 KKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
+ + E+EEEE+ +E EEE E E E+ E + + E + +
Sbjct: 369 EVDEDEDEEEEQRSDEHEEEEGEDSEEEGSQSREDGSSESSSDVGSDSESKAD 421
Score = 37.8 bits (88), Expect = 0.003
Identities = 16/48 (33%), Positives = 25/48 (52%)
Query: 164 EEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
E+ +E EEEEG + EEEG E+G E + + E + ++E
Sbjct: 379 EQRSDEHEEEEGEDSEEEGSQSREDGSSESSSDVGSDSESKADKESAS 426
Score = 35.5 bits (82), Expect = 0.017
Identities = 12/48 (25%), Positives = 20/48 (41%)
Query: 164 EEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
E EEEE E+ E + G E + E + ++E + + E
Sbjct: 384 EHEEEEGEDSEEEGSQSREDGSSESSSDVGSDSESKADKESASDSDSE 431
Score = 35.1 bits (81), Expect = 0.019
Identities = 14/48 (29%), Positives = 23/48 (47%)
Query: 163 KEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEE 210
+ EEEE E+ EE G + E G E + E + ++E + + E
Sbjct: 384 EHEEEEGEDSEEEGSQSREDGSSESSSDVGSDSESKADKESASDSDSE 431
Score = 35.1 bits (81), Expect = 0.020
Identities = 15/48 (31%), Positives = 25/48 (52%)
Query: 162 KKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEE 209
+ EEEE E+ EEEG + E+G G + E + ++E + + E
Sbjct: 384 EHEEEEGEDSEEEGSQSREDGSSESSSDVGSDSESKADKESASDSDSE 431
Score = 35.1 bits (81), Expect = 0.021
Identities = 11/49 (22%), Positives = 21/49 (42%)
Query: 163 KEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
++ +E EEEE EEE E+ + + E + ++E +
Sbjct: 379 EQRSDEHEEEEGEDSEEEGSQSREDGSSESSSDVGSDSESKADKESASD 427
Score = 33.6 bits (77), Expect = 0.057
Identities = 11/48 (22%), Positives = 21/48 (43%)
Query: 164 EEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
+E EEEE E+ E + G E + + E + ++E + +
Sbjct: 383 DEHEEEEGEDSEEEGSQSREDGSSESSSDVGSDSESKADKESASDSDS 430
Score = 33.6 bits (77), Expect = 0.070
Identities = 11/48 (22%), Positives = 22/48 (45%)
Query: 160 KKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEE 207
+ ++EE E+ EEE E+ + G E + ++E + + E
Sbjct: 384 EHEEEEGEDSEEEGSQSREDGSSESSSDVGSDSESKADKESASDSDSE 431
Score = 33.2 bits (76), Expect = 0.093
Identities = 12/48 (25%), Positives = 23/48 (47%)
Query: 161 KKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEE 208
+ +EEE E+ EEE E+ + G + E + ++E + + E
Sbjct: 384 EHEEEEGEDSEEEGSQSREDGSSESSSDVGSDSESKADKESASDSDSE 431
Score = 32.4 bits (74), Expect = 0.15
Identities = 11/50 (22%), Positives = 21/50 (42%)
Query: 162 KKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
++ +E EEEE E EEE + + + E + ++E +
Sbjct: 379 EQRSDEHEEEEGEDSEEEGSQSREDGSSESSSDVGSDSESKADKESASDS 428
Score = 30.9 bits (70), Expect = 0.45
Identities = 9/48 (18%), Positives = 22/48 (45%)
Query: 159 KKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEE 206
+ +++E E+ EEE + E+ + E + ++E + + E
Sbjct: 384 EHEEEEGEDSEEEGSQSREDGSSESSSDVGSDSESKADKESASDSDSE 431
Score = 30.9 bits (70), Expect = 0.53
Identities = 10/51 (19%), Positives = 23/51 (45%)
Query: 161 KKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
+++ +E EEEE E+ EE + + + E + ++E + +
Sbjct: 379 EQRSDEHEEEEGEDSEEEGSQSREDGSSESSSDVGSDSESKADKESASDSD 429
Score = 28.2 bits (63), Expect = 3.8
Identities = 11/53 (20%), Positives = 24/53 (45%)
Query: 150 TLRKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEE 202
R + ++++ + EEE + E+G E G + E ++E + + E
Sbjct: 379 EQRSDEHEEEEGEDSEEEGSQSREDGSSESSSDVGSDSESKADKESASDSDSE 431
>gnl|CDD|220759 pfam10446, DUF2457, Protein of unknown function (DUF2457). This is
a family of uncharacterized proteins.
Length = 449
Score = 44.6 bits (105), Expect = 2e-05
Identities = 18/65 (27%), Positives = 39/65 (60%)
Query: 145 PLLVLTLRKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEE 204
L L KK+ +K +E EEE EEE +EE++ +E+ ++++++E++E+E+
Sbjct: 24 EKLTLNDTMKKENAIRKLGKEAEEEAMEEEDDDEEDDDDDDDEDEDDDDDDDDEDDEDED 83
Query: 205 EEEEE 209
+++
Sbjct: 84 DDDST 88
Score = 34.6 bits (79), Expect = 0.026
Identities = 13/63 (20%), Positives = 42/63 (66%), Gaps = 10/63 (15%)
Query: 149 LTLRKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEE 208
+RK K+ +++ EEE+++EE+++ ++E+E ++++++++E++E+E+++
Sbjct: 36 NAIRKLGKEAEEEAMEEEDDDEEDDDDDDDEDE----------DDDDDDDDEDDEDEDDD 85
Query: 209 EEE 211
+
Sbjct: 86 DST 88
>gnl|CDD|240329 PTZ00248, PTZ00248, eukaryotic translation initiation factor 2
subunit 1; Provisional.
Length = 319
Score = 42.7 bits (101), Expect = 4e-05
Identities = 21/46 (45%), Positives = 31/46 (67%)
Query: 163 KEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEE 208
+EE+ EE E+ EEEEE E E EE+E+EEEEE+++E ++
Sbjct: 274 GDEEDLEELLEKAEEEEEEDDYSESEDEDEEDEDEEEEEDDDEGDK 319
Score = 33.1 bits (76), Expect = 0.091
Identities = 22/57 (38%), Positives = 35/57 (61%)
Query: 155 KKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
K+ KKK + + + E E GG+EE+ E+ EEE++ E E+E+EE+E+EE
Sbjct: 253 KEVIKKKGGDFKVKGEPEVVGGDEEDLEELLEKAEEEEEEDDYSESEDEDEEDEDEE 309
>gnl|CDD|221175 pfam11705, RNA_pol_3_Rpc31, DNA-directed RNA polymerase III subunit
Rpc31. RNA polymerase III contains seventeen subunits
in yeasts and in human cells. Twelve of these are akin
to RNA polymerase I or II and the other five are RNA pol
III-specific, and form the functionally distinct groups
(i) Rpc31-Rpc34-Rpc82, and (ii) Rpc37-Rpc53. Rpc31,
Rpc34 and Rpc82 form a cluster of enzyme-specific
subunits that contribute to transcription initiation in
S.cerevisiae and H.sapiens. There is evidence that these
subunits are anchored at or near the N-terminal Zn-fold
of Rpc1, itself prolonged by a highly conserved but RNA
polymerase III-specific domain.
Length = 221
Score = 42.4 bits (100), Expect = 4e-05
Identities = 24/64 (37%), Positives = 39/64 (60%), Gaps = 5/64 (7%)
Query: 153 KKKKKKKKKKKEEEEEEEE-----EEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEE 207
K K+K EEEE+ +E E++ E E E E+E EEEEEEEEE+E+ +++
Sbjct: 133 SKFKRKVGLFTEEEEDIDEKLSMLEKKLKELEAEDVDEEDEKDEEEEEEEEEEDEDFDDD 192
Query: 208 EEEE 211
++++
Sbjct: 193 DDDD 196
Score = 42.0 bits (99), Expect = 7e-05
Identities = 22/63 (34%), Positives = 39/63 (61%)
Query: 149 LTLRKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEE 208
L L K K+K +EEE+ +E+ ++ +E + + E++EEEEEEEEEE+E+
Sbjct: 130 LALSKFKRKVGLFTEEEEDIDEKLSMLEKKLKELEAEDVDEEDEKDEEEEEEEEEEDEDF 189
Query: 209 EEE 211
+++
Sbjct: 190 DDD 192
Score = 40.1 bits (94), Expect = 3e-04
Identities = 20/56 (35%), Positives = 35/56 (62%), Gaps = 10/56 (17%)
Query: 154 KKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEE 209
K +KK KE E E+ +EE+ +EEEE EEEEEE+E+ ++++++++
Sbjct: 152 KLSMLEKKLKELEAEDVDEEDEKDEEEE----------EEEEEEDEDFDDDDDDDD 197
Score = 39.7 bits (93), Expect = 4e-04
Identities = 20/56 (35%), Positives = 35/56 (62%), Gaps = 10/56 (17%)
Query: 153 KKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEE 208
K +KK K+ E E+ +EE+E EEEEE EEEEE+E+ ++++++++
Sbjct: 152 KLSMLEKKLKELEAEDVDEEDEKDEEEEE----------EEEEEDEDFDDDDDDDD 197
Score = 34.0 bits (78), Expect = 0.033
Identities = 19/79 (24%), Positives = 40/79 (50%), Gaps = 10/79 (12%)
Query: 126 GLDKNLKGERNVKLPKMLEPLLVLTLRKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGG- 184
GL + + + KL + + L L ++ +K ++EEEEEEEE+E+ +++++
Sbjct: 140 GLFTEEEEDIDEKLSMLEKKLKELEAEDVDEEDEKDEEEEEEEEEEDEDFDDDDDDDDDD 199
Query: 185 ---------GEEEGGGEEE 194
GE++ ++E
Sbjct: 200 YNAENYFDNGEDDDYDDDE 218
>gnl|CDD|217503 pfam03344, Daxx, Daxx Family. The Daxx protein (also known as the
Fas-binding protein) is thought to play a role in
apoptosis, but precise role played by Daxx remains to be
determined. Daxx forms a complex with Axin.
Length = 715
Score = 42.6 bits (100), Expect = 8e-05
Identities = 29/54 (53%), Positives = 33/54 (61%)
Query: 158 KKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
++ EEEE EEEEE EEEEE EE GE+EEEEEE E + EEE E
Sbjct: 434 MASQESEEEESVEEEEEEEEEEEEEEQESEEEEGEDEEEEEEVEADNGSEEEME 487
Score = 41.1 bits (96), Expect = 2e-04
Identities = 29/54 (53%), Positives = 34/54 (62%)
Query: 157 KKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEE 210
++ +EEE EEEEEE EEEEE EEE G +EEEEEE E + EEE E
Sbjct: 434 MASQESEEEESVEEEEEEEEEEEEEEQESEEEEGEDEEEEEEVEADNGSEEEME 487
Score = 39.5 bits (92), Expect = 8e-04
Identities = 21/56 (37%), Positives = 32/56 (57%)
Query: 155 KKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEE 210
++ ++++ ++EEEEEE E + G EEE G E +G GEE EE+ E E
Sbjct: 460 QESEEEEGEDEEEEEEVEADNGSEEEMEGSSEGDGDGEEPEEDAERRNSEMAGISR 515
Score = 39.1 bits (91), Expect = 0.001
Identities = 21/54 (38%), Positives = 32/54 (59%)
Query: 158 KKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
++++++ EEEE E+EEE E E + G EE G E + + EE EE+ E E
Sbjct: 456 EEEEQESEEEEGEDEEEEEEVEADNGSEEEMEGSSEGDGDGEEPEEDAERRNSE 509
Score = 38.0 bits (88), Expect = 0.003
Identities = 24/60 (40%), Positives = 29/60 (48%)
Query: 152 RKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
+ + K E +E EE EEE EEEEEEEE+E EEEE E+EE
Sbjct: 412 QGTSSRSSDPSKASSTSGESPSMASQESEEEESVEEEEEEEEEEEEEEQESEEEEGEDEE 471
Score = 36.0 bits (83), Expect = 0.009
Identities = 25/62 (40%), Positives = 40/62 (64%)
Query: 150 TLRKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEE 209
+++++++++EEEEE+E EEE GE+EEE E + G EEE E E + + EE E
Sbjct: 441 EEESVEEEEEEEEEEEEEEQESEEEEGEDEEEEEEVEADNGSEEEMEGSSEGDGDGEEPE 500
Query: 210 EE 211
E+
Sbjct: 501 ED 502
Score = 27.2 bits (60), Expect = 8.3
Identities = 22/85 (25%), Positives = 42/85 (49%)
Query: 127 LDKNLKGERNVKLPKMLEPLLVLTLRKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGE 186
L + L+ R V + ++ E + +++ ++++++K +E E + + +
Sbjct: 369 LARKLRSNREVAVSRLEEVISKYAMKQDDTEEEERRKRQERERQGTSSRSSDPSKASSTS 428
Query: 187 EEGGGEEEEEEEEEEEEEEEEEEEE 211
E +E EEEE EEEEEEEE
Sbjct: 429 GESPSMASQESEEEESVEEEEEEEE 453
>gnl|CDD|218333 pfam04931, DNA_pol_phi, DNA polymerase phi. This family includes
the fifth essential DNA polymerase in yeast EC:2.7.7.7.
Pol5p is localised exclusively to the nucleolus and
binds near or at the enhancer region of rRNA-encoding
DNA repeating units.
Length = 784
Score = 42.6 bits (100), Expect = 9e-05
Identities = 21/66 (31%), Positives = 38/66 (57%), Gaps = 4/66 (6%)
Query: 146 LLVLTLRKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEE 205
L VL + K + ++ + EEE+E++ EE ++E+E E E E E + E+ EE
Sbjct: 629 LDVLKADENKSRHQQLFEGEEEDEDDLEETDDDEDE----CEAIEDSESESESDGEDGEE 684
Query: 206 EEEEEE 211
+E+E++
Sbjct: 685 DEQEDD 690
>gnl|CDD|219408 pfam07423, DUF1510, Protein of unknown function (DUF1510). This
family consists of several hypothetical bacterial
proteins of around 200 residues in length. The function
of this family is unknown.
Length = 214
Score = 41.3 bits (97), Expect = 1e-04
Identities = 24/58 (41%), Positives = 35/58 (60%)
Query: 154 KKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
KK ++ + EE +EEE+E E++E G E+ E EEE EEE+EE +E E+E
Sbjct: 52 KKSDDQETAEIEEVKEEEKEAANSEDKEDKGDAEKEDEESEEENEEEDEESSDENEKE 109
Score = 41.3 bits (97), Expect = 1e-04
Identities = 24/59 (40%), Positives = 36/59 (61%)
Query: 153 KKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
KK ++ + EE +EEE+E E++E+ G E+E EEE EEE+EE +E E+E
Sbjct: 52 KKSDDQETAEIEEVKEEEKEAANSEDKEDKGDAEKEDEESEEENEEEDEESSDENEKET 110
Score = 35.1 bits (81), Expect = 0.012
Identities = 18/60 (30%), Positives = 30/60 (50%)
Query: 152 RKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
++K+ + KE++ + E+E+E EEE E E E+E EE+ E E+E
Sbjct: 67 EEEKEAANSEDKEDKGDAEKEDEESEEENEEEDEESSDENEKETEEKTESNVEKEITNPS 126
Score = 35.1 bits (81), Expect = 0.012
Identities = 23/60 (38%), Positives = 37/60 (61%)
Query: 152 RKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
+ +++ KK +++E E EE EEE+E E++ + E+E+EE EEE EEE+EE
Sbjct: 42 DQAAADEQEAKKSDDQETAEIEEVKEEEKEAANSEDKEDKGDAEKEDEESEEENEEEDEE 101
Score = 35.1 bits (81), Expect = 0.012
Identities = 19/60 (31%), Positives = 34/60 (56%)
Query: 152 RKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
K+++K+ E++E++ + E+ EE EE E+E +E E+E EE+ E E+E
Sbjct: 64 EVKEEEKEAANSEDKEDKGDAEKEDEESEEENEEEDEESSDENEKETEEKTESNVEKEIT 123
Score = 30.5 bits (69), Expect = 0.50
Identities = 16/56 (28%), Positives = 32/56 (57%)
Query: 156 KKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
+ +E+E ++ +++ E EE E+E E++E++ + E+E+EE EEE
Sbjct: 39 SPSDQAAADEQEAKKSDDQETAEIEEVKEEEKEAANSEDKEDKGDAEKEDEESEEE 94
>gnl|CDD|237904 PRK15080, PRK15080, ethanolamine utilization protein EutJ;
Provisional.
Length = 267
Score = 41.4 bits (98), Expect = 1e-04
Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 16/73 (21%)
Query: 64 QLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQAT--KDAGAI------AGLNVMRIV 115
++ ++K T E LG + A +P T D AI AGL V ++
Sbjct: 71 TIVRRLKATLEEKLGRELTHAATAIPP--------GTSEGDPRAIINVVESAGLEVTHVL 122
Query: 116 NEPTAAALAYGLD 128
+EPTAAA G+D
Sbjct: 123 DEPTAAAAVLGID 135
>gnl|CDD|212671 cd10229, HSPA12_like_NBD, Nucleotide-binding domain of HSPA12A,
HSPA12B and similar proteins. Human HSPA12A (also known
as 70-kDa heat shock protein-12A) and HSPA12B (also
known as 70-kDa heat shock protein-12B, chromosome 20
open reading frame 60/C20orf60, dJ1009E24.2) belong to
the heat shock protein 70 (HSP70) family of chaperones
that assist in protein folding and assembly, and can
direct incompetent "client" proteins towards
degradation. Typically, HSP70s have a nucleotide-binding
domain (NBD) and a substrate-binding domain (SBD). The
nucleotide sits in a deep cleft formed between the two
lobes of the NBD. The two subdomains of each lobe change
conformation between ATP-bound, ADP-bound, and
nucleotide-free states. ATP binding opens up the
substrate-binding site; substrate-binding increases the
rate of ATP hydrolysis. HSP70 chaperone activity is
regulated by various co-chaperones: J-domain proteins
and nucleotide exchange factors (NEFs). No co-chaperones
have yet been identified for HSPA12A or HSPA12B. The
gene encoding HSPA12A maps to 10q26.12, a cytogenetic
region that might represent a common susceptibility
locus for both schizophrenia and bipolar affective
disorder; reduced expression of HSPA12A has been shown
in the prefrontal cortex of subjects with schizophrenia.
HSPA12A is also a candidate gene for forelimb-girdle
muscular anomaly, an autosomal recessive disorder of
Japanese black cattle. HSPA12A is predominantly
expressed in neuronal cells. It may also play a role in
the atherosclerotic process. The gene encoding HSPA12B
maps to 20p13. HSPA12B is predominantly expressed in
endothelial cells, is required for angiogenesis, and may
interact with known angiogenesis mediators. It may be
important for host defense in microglia-mediated immune
response. HSPA12B expression is up-regulated in
lipopolysaccharide (LPS)-induced inflammatory response
in the spinal cord, and mostly located in active
microglia; this induced expression may be regulated by
activation of MAPK-p38, ERK1/2 and SAPK/JNK signaling
pathways. Overexpression of HSPA12B also protects
against LPS-induced cardiac dysfunction and involves the
preserved activation of the PI3K/Akt signaling pathway.
Length = 404
Score = 41.5 bits (98), Expect = 1e-04
Identities = 26/75 (34%), Positives = 35/75 (46%), Gaps = 16/75 (21%)
Query: 66 LTKMKETAEAYLGHSVRDA---------VITVPAYFNDAQRQATKDAGAIAGLNVMR--- 113
L + E A L + + V+TVPA ++DA +QA ++A AGL R
Sbjct: 116 LRYLYEHALEELKKTYGNGEFTALDIEWVLTVPAIWSDAAKQAMREAAIKAGLVSSREGP 175
Query: 114 ----IVNEPTAAALA 124
IV EP AAAL
Sbjct: 176 DRLLIVLEPEAAALY 190
>gnl|CDD|148051 pfam06213, CobT, Cobalamin biosynthesis protein CobT. This family
consists of several bacterial cobalamin biosynthesis
(CobT) proteins. CobT is involved in the transformation
of precorrin-3 into cobyrinic acid.
Length = 282
Score = 41.0 bits (96), Expect = 2e-04
Identities = 14/48 (29%), Positives = 26/48 (54%)
Query: 164 EEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
+ E+ E+E++ +E+++ G EE G + E+ + EE E E E
Sbjct: 220 DSEDNEDEDDPKEDEDDDQGEEEESGSSDSLSEDSDASSEEMESGEME 267
Score = 37.9 bits (88), Expect = 0.002
Identities = 15/52 (28%), Positives = 28/52 (53%)
Query: 160 KKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
+ + + E+ E+E++ E+E++ G EEE G + E+ + EE E E
Sbjct: 215 EPESADSEDNEDEDDPKEDEDDDQGEEEESGSSDSLSEDSDASSEEMESGEM 266
Score = 37.5 bits (87), Expect = 0.003
Identities = 11/47 (23%), Positives = 23/47 (48%)
Query: 165 EEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
+E E + E+ +E++ +++ G EEE + E+ + EE
Sbjct: 214 DEPESADSEDNEDEDDPKEDEDDDQGEEEESGSSDSLSEDSDASSEE 260
Score = 35.2 bits (81), Expect = 0.015
Identities = 15/51 (29%), Positives = 25/51 (49%)
Query: 161 KKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
+ E++ +E+E+++ GEEEE G + EE E E E E +
Sbjct: 224 NEDEDDPKEDEDDDQGEEEESGSSDSLSEDSDASSEEMESGEMEAAEASAD 274
Score = 34.0 bits (78), Expect = 0.034
Identities = 10/48 (20%), Positives = 22/48 (45%)
Query: 164 EEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
+E E + E+ E++ + +++G EE + E+ + EE
Sbjct: 214 DEPESADSEDNEDEDDPKEDEDDDQGEEEESGSSDSLSEDSDASSEEM 261
Score = 29.4 bits (66), Expect = 1.4
Identities = 10/51 (19%), Positives = 22/51 (43%)
Query: 161 KKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
+ EE +E + E+ ++ E++++ EEEE + E+
Sbjct: 203 LSSMDMAEELGDEPESADSEDNEDEDDPKEDEDDDQGEEEESGSSDSLSED 253
Score = 29.0 bits (65), Expect = 1.5
Identities = 11/53 (20%), Positives = 23/53 (43%)
Query: 159 KKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
+ + + +E+E++++ EE E+ EE E E E E ++
Sbjct: 224 NEDEDDPKEDEDDDQGEEEESGSSDSLSEDSDASSEEMESGEMEAAEASADDT 276
Score = 29.0 bits (65), Expect = 1.7
Identities = 10/52 (19%), Positives = 22/52 (42%)
Query: 160 KKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
+ EE +E E + E+ + + ++++ EEEE + E+
Sbjct: 203 LSSMDMAEELGDEPESADSEDNEDEDDPKEDEDDDQGEEEESGSSDSLSEDS 254
Score = 27.9 bits (62), Expect = 4.3
Identities = 11/58 (18%), Positives = 24/58 (41%)
Query: 154 KKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
+ + K+ E++++ EEEE G + E E E E ++ + ++
Sbjct: 224 NEDEDDPKEDEDDDQGEEEESGSSDSLSEDSDASSEEMESGEMEAAEASADDTPDSDD 281
Score = 27.5 bits (61), Expect = 5.9
Identities = 12/58 (20%), Positives = 23/58 (39%)
Query: 152 RKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEE 209
+ K+ + ++ EEEE E+ EE GE E E ++ + ++
Sbjct: 225 EDEDDPKEDEDDDQGEEEESGSSDSLSEDSDASSEEMESGEMEAAEASADDTPDSDDA 282
>gnl|CDD|212657 cd00012, NBD_sugar-kinase_HSP70_actin, Nucleotide-Binding Domain of
the sugar kinase/HSP70/actin superfamily. This
superfamily includes the actin family, the HSP70 family
of molecular chaperones and nucleotide exchange factors,
the ROK (repressor, ORF, kinase) family, the hexokinase
family, the FGGY family (which includes glycerol kinase
and similar carbohydrate kinases such as rhamnulokinase
and xylulokinase), the exopolyphosphatase/guanosine
pentaphosphate phosphohydrolase/nucleoside triphosphate
diphosphohydrolase family, propionate kinase/acetate
kinase family, glycerol dehydratase reactivase,
2-hydroxyglutaryl-CoA dehydratase component A,
N-acetylglucosamine kinase, butyrate kinase 2,
Escherichia coli YeaZ and similar glycoproteases, the
cell shape-determining protein MreB, the plasmid DNA
segregation factor ParM, cell cycle proteins FtsA, Pili
assembly protein PilM, ethanolamine utilization protein
EutJ, and similar proteins. The nucleotide-binding site
residues are conserved; the nucleotide sits in a deep
cleft formed between the two lobes of the
nucleotide-binding domain (NBD). Substrate binding to
superfamily members is associated with closure of this
catalytic site cleft. The functional activities of
several members of the superfamily, including
hexokinases, actin, and HSP70s, are modulated by
allosteric effectors, which may act on the cleft
closure.
Length = 185
Score = 40.3 bits (94), Expect = 2e-04
Identities = 22/91 (24%), Positives = 31/91 (34%), Gaps = 12/91 (13%)
Query: 57 HHSPRLFQLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQAT----------KDAGAI 106
L + L ++ + A L + IT P R+ A
Sbjct: 38 TDLDELEEALRELLKEALRQLKSEIDAVGITEPGGVPKENREVIILPNLLLIPLALALED 97
Query: 107 AGLNVMRIVNEPTAAALAYGLDKNLKGERNV 137
G + +VN+ AAALA GL K E V
Sbjct: 98 LGGVPVAVVNDAVAAALAEGLF--GKEEDTV 126
>gnl|CDD|220102 pfam09073, BUD22, BUD22. BUD22 has been shown in yeast to be a
nuclear protein involved in bud-site selection. It plays
a role in positioning the proximal bud pole signal. More
recently it has been shown to be involved in ribosome
biogenesis.
Length = 424
Score = 41.0 bits (96), Expect = 2e-04
Identities = 22/62 (35%), Positives = 37/62 (59%), Gaps = 4/62 (6%)
Query: 150 TLRKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEE 209
+ K KKK KK K++E +E +++ EE E E+E EE E++ ++EEEE+ +
Sbjct: 146 AKKGKAKKKTKKSKKKEAKESSDKDDEEESE----SEDESKSEESAEDDSDDEEEEDSDS 201
Query: 210 EE 211
E+
Sbjct: 202 ED 203
Score = 32.5 bits (74), Expect = 0.15
Identities = 22/75 (29%), Positives = 29/75 (38%), Gaps = 16/75 (21%)
Query: 153 KKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEE----------------GGGEEEEE 196
KK+ K+ K +EEE E E+E EE E +EE +EEE
Sbjct: 160 KKEAKESSDKDDEEESESEDESKSEESAEDDSDDEEEEDSDSEDYSQYDGMLVDSSDEEE 219
Query: 197 EEEEEEEEEEEEEEE 211
EE E+ E
Sbjct: 220 GEEAPSINYNEDTSE 234
Score = 28.6 bits (64), Expect = 2.5
Identities = 14/69 (20%), Positives = 29/69 (42%), Gaps = 9/69 (13%)
Query: 152 RKKKKKKKKKKKEEEEEEEEEEEGGEEEEE---------GGGGEEEGGGEEEEEEEEEEE 202
+ + + + K +E E++ ++EE + + E +EE G E E+
Sbjct: 173 EESESEDESKSEESAEDDSDDEEEEDSDSEDYSQYDGMLVDSSDEEEGEEAPSINYNEDT 232
Query: 203 EEEEEEEEE 211
E E +E +
Sbjct: 233 SESESDESD 241
Score = 28.6 bits (64), Expect = 2.5
Identities = 21/85 (24%), Positives = 29/85 (34%), Gaps = 25/85 (29%)
Query: 152 RKKKKKKKKKKKEEEEEEEEEEEGGEEEEE-------------------------GGGGE 186
KKK+ K+ K++EEE E E+E EE E
Sbjct: 158 SKKKEAKESSDKDDEEESESEDESKSEESAEDDSDDEEEEDSDSEDYSQYDGMLVDSSDE 217
Query: 187 EEGGGEEEEEEEEEEEEEEEEEEEE 211
EEG E+ E E +E +
Sbjct: 218 EEGEEAPSINYNEDTSESESDESDS 242
>gnl|CDD|185603 PTZ00415, PTZ00415, transmission-blocking target antigen s230;
Provisional.
Length = 2849
Score = 40.8 bits (95), Expect = 3e-04
Identities = 17/47 (36%), Positives = 32/47 (68%)
Query: 165 EEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
++E+E+E+++ E++EE EEE G ++E+EE+E E+ E+ E
Sbjct: 156 DDEDEDEDDDDEEDDEEEEEEEEEIKGFDDEDEEDEGGEDFTYEKSE 202
Score = 40.0 bits (93), Expect = 7e-04
Identities = 15/39 (38%), Positives = 25/39 (64%)
Query: 171 EEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEE 209
EE+ + ++E E++++EE++EEEEEEEEE
Sbjct: 141 AEEDMSPRDNFVIDDDDEDEDEDDDDEEDDEEEEEEEEE 179
Score = 37.7 bits (87), Expect = 0.004
Identities = 12/35 (34%), Positives = 23/35 (65%)
Query: 177 EEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
EE+ ++E+E+E++++EE++EEEEE
Sbjct: 141 AEEDMSPRDNFVIDDDDEDEDEDDDDEEDDEEEEE 175
Score = 37.3 bits (86), Expect = 0.004
Identities = 14/39 (35%), Positives = 24/39 (61%)
Query: 170 EEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEE 208
EE+ + +E+ ++++EE++EEEEEEEEE
Sbjct: 141 AEEDMSPRDNFVIDDDDEDEDEDDDDEEDDEEEEEEEEE 179
Score = 36.6 bits (84), Expect = 0.007
Identities = 16/57 (28%), Positives = 34/57 (59%)
Query: 155 KKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
K+++ + EE+ + +++E+ +++ +EEEEEEEEE + ++E+EE
Sbjct: 133 KRRRARHLAEEDMSPRDNFVIDDDDEDEDEDDDDEEDDEEEEEEEEEIKGFDDEDEE 189
Score = 36.2 bits (83), Expect = 0.012
Identities = 13/41 (31%), Positives = 29/41 (70%), Gaps = 3/41 (7%)
Query: 169 EEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEE 209
++++E+ E++++ E++ EEEEEE + ++E+EE+E
Sbjct: 154 DDDDEDEDEDDDD---EEDDEEEEEEEEEIKGFDDEDEEDE 191
Score = 35.8 bits (82), Expect = 0.015
Identities = 16/49 (32%), Positives = 31/49 (63%), Gaps = 4/49 (8%)
Query: 165 EEEEEEEEEEGGEEEEEGGGGEEE----GGGEEEEEEEEEEEEEEEEEE 209
++++E+E+E+ +EE++ EEE G +E+EE+E E+ E+ E
Sbjct: 154 DDDDEDEDEDDDDEEDDEEEEEEEEEIKGFDDEDEEDEGGEDFTYEKSE 202
Score = 33.1 bits (75), Expect = 0.11
Identities = 15/45 (33%), Positives = 28/45 (62%)
Query: 164 EEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEE 208
++++EE++EEE EEEE G +E+ E E+ E+ E ++ +
Sbjct: 163 DDDDEEDDEEEEEEEEEIKGFDDEDEEDEGGEDFTYEKSEVDKTD 207
>gnl|CDD|218538 pfam05285, SDA1, SDA1. This family consists of several SDA1
protein homologues. SDA1 is a Saccharomyces cerevisiae
protein which is involved in the control of the actin
cytoskeleton. The protein is essential for cell
viability and is localised in the nucleus.
Length = 317
Score = 40.4 bits (95), Expect = 3e-04
Identities = 18/56 (32%), Positives = 35/56 (62%)
Query: 156 KKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
+KKK+ ++ E +++++EE E EE ++EG + E ++E E + E+EEE+
Sbjct: 83 RKKKEAEQGLESDDDDDEEEEWEVEEDEDSDDEGEWIDVESDKEIESSDSEDEEEK 138
Score = 39.3 bits (92), Expect = 7e-04
Identities = 18/63 (28%), Positives = 37/63 (58%)
Query: 149 LTLRKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEE 208
L + K++++KKK+ E+ E +++++ EE E + + GE + E ++E E + E
Sbjct: 74 LLEKWKEEERKKKEAEQGLESDDDDDEEEEWEVEEDEDSDDEGEWIDVESDKEIESSDSE 133
Query: 209 EEE 211
+EE
Sbjct: 134 DEE 136
Score = 34.6 bits (80), Expect = 0.027
Identities = 18/48 (37%), Positives = 26/48 (54%)
Query: 164 EEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
+E E + E+E ++E E+ EE+EEE EEEE E E+E
Sbjct: 125 KEIESSDSEDEEEKDEAAKKAKEDSDEELSEEDEEEAAEEEEAEAEKE 172
Score = 33.9 bits (78), Expect = 0.038
Identities = 19/48 (39%), Positives = 27/48 (56%)
Query: 163 KEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEE 210
KE E + E+EE +E + + + EE+EEE EEEE E E+E
Sbjct: 125 KEIESSDSEDEEEKDEAAKKAKEDSDEELSEEDEEEAAEEEEAEAEKE 172
Score = 33.9 bits (78), Expect = 0.040
Identities = 20/48 (41%), Positives = 27/48 (56%)
Query: 164 EEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
++E E + E EE++E +E EE EE+EEE EEEE E E
Sbjct: 123 SDKEIESSDSEDEEEKDEAAKKAKEDSDEELSEEDEEEAAEEEEAEAE 170
Score = 33.5 bits (77), Expect = 0.056
Identities = 16/48 (33%), Positives = 29/48 (60%)
Query: 164 EEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
E EE+E+ ++EG + E E E+EEE++E ++ +E+ +EE
Sbjct: 105 EVEEDEDSDDEGEWIDVESDKEIESSDSEDEEEKDEAAKKAKEDSDEE 152
Score = 33.5 bits (77), Expect = 0.068
Identities = 20/48 (41%), Positives = 28/48 (58%)
Query: 162 KKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEE 209
K+ E + E+EEE E ++ +E EE+EEE EEEE E E+E
Sbjct: 125 KEIESSDSEDEEEKDEAAKKAKEDSDEELSEEDEEEAAEEEEAEAEKE 172
Score = 32.7 bits (75), Expect = 0.11
Identities = 18/46 (39%), Positives = 26/46 (56%)
Query: 166 EEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
E ++E E E+EEE ++ + +EE EE+EEE EEEE
Sbjct: 122 ESDKEIESSDSEDEEEKDEAAKKAKEDSDEELSEEDEEEAAEEEEA 167
Score = 32.7 bits (75), Expect = 0.12
Identities = 19/48 (39%), Positives = 28/48 (58%)
Query: 161 KKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEE 208
K+ E + E+EEE+ ++ +EE E+EEE EEEE E E+E
Sbjct: 125 KEIESSDSEDEEEKDEAAKKAKEDSDEELSEEDEEEAAEEEEAEAEKE 172
Score = 32.3 bits (74), Expect = 0.12
Identities = 18/48 (37%), Positives = 27/48 (56%)
Query: 164 EEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
E ++E E + EEE++ + + +EE EE+EEE EEEE E
Sbjct: 122 ESDKEIESSDSEDEEEKDEAAKKAKEDSDEELSEEDEEEAAEEEEAEA 169
Score = 30.8 bits (70), Expect = 0.47
Identities = 18/48 (37%), Positives = 26/48 (54%)
Query: 164 EEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
+ E ++E E E+EE + E+ +EE EE+EEE EEEE
Sbjct: 119 IDVESDKEIESSDSEDEEEKDEAAKKAKEDSDEELSEEDEEEAAEEEE 166
Score = 27.7 bits (62), Expect = 4.2
Identities = 17/55 (30%), Positives = 28/55 (50%)
Query: 157 KKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
+ +KK EEE + G E E+ E + E+ E +++++EEEE E E
Sbjct: 53 EAGEKKGYGEEEVVDGIPGLELLEKWKEEERKKKEAEQGLESDDDDDEEEEWEVE 107
Score = 27.3 bits (61), Expect = 6.5
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 6/54 (11%)
Query: 164 EEEEEEEEE------EEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
EE+E+ ++E E E E EEE ++ +E+ +EE EE+EEE
Sbjct: 107 EEDEDSDDEGEWIDVESDKEIESSDSEDEEEKDEAAKKAKEDSDEELSEEDEEE 160
>gnl|CDD|237063 PRK12329, nusA, transcription elongation factor NusA; Provisional.
Length = 449
Score = 40.2 bits (94), Expect = 4e-04
Identities = 18/50 (36%), Positives = 26/50 (52%)
Query: 162 KKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
++EEEE + E E E E+ EE+ E E+E E+E+E EE
Sbjct: 391 QREEEEALQREAEERLEAEQAERAEEDARLRELYPLPEDEFEDEDELEEA 440
Score = 39.8 bits (93), Expect = 6e-04
Identities = 20/48 (41%), Positives = 26/48 (54%)
Query: 164 EEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
E EE E E+ EE+ E E+E E+E+E EE + EEEEE
Sbjct: 400 REAEERLEAEQAERAEEDARLRELYPLPEDEFEDEDELEEAQPEEEEE 447
Score = 38.6 bits (90), Expect = 0.001
Identities = 20/48 (41%), Positives = 25/48 (52%)
Query: 164 EEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
+ E EE E E E EE E E+E E+E+E EE + EEEE
Sbjct: 399 QREAEERLEAEQAERAEEDARLRELYPLPEDEFEDEDELEEAQPEEEE 446
Score = 37.1 bits (86), Expect = 0.004
Identities = 21/69 (30%), Positives = 35/69 (50%)
Query: 143 LEPLLVLTLRKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEE 202
E V L ++++++ ++E EE E E+ EE+ +E E+E+E EE
Sbjct: 380 AEDAKVAELISQREEEEALQREAEERLEAEQAERAEEDARLRELYPLPEDEFEDEDELEE 439
Query: 203 EEEEEEEEE 211
+ EEEEE
Sbjct: 440 AQPEEEEEA 448
Score = 35.5 bits (82), Expect = 0.013
Identities = 18/48 (37%), Positives = 23/48 (47%)
Query: 164 EEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
EE E E+ E EE+ E E+E+E EE + EEEEE
Sbjct: 402 AEERLEAEQAERAEEDARLRELYPLPEDEFEDEDELEEAQPEEEEEAR 449
Score = 34.4 bits (79), Expect = 0.031
Identities = 15/57 (26%), Positives = 24/57 (42%)
Query: 155 KKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
++ + K E + EEEE + E E E+ EE+ E E+E E+
Sbjct: 377 DQEAEDAKVAELISQREEEEALQREAEERLEAEQAERAEEDARLRELYPLPEDEFED 433
Score = 34.0 bits (78), Expect = 0.042
Identities = 17/58 (29%), Positives = 25/58 (43%)
Query: 154 KKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
++ + K E + EEEE E EE E+ EE+ E E+E E+E
Sbjct: 377 DQEAEDAKVAELISQREEEEALQREAEERLEAEQAERAEEDARLRELYPLPEDEFEDE 434
Score = 31.3 bits (71), Expect = 0.37
Identities = 17/63 (26%), Positives = 24/63 (38%)
Query: 149 LTLRKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEE 208
LT K K + +E E+ + E + EEE E E E+ E EE+ E
Sbjct: 363 LTGWKIDIKDSAEYDQEAEDAKVAELISQREEEEALQREAEERLEAEQAERAEEDARLRE 422
Query: 209 EEE 211
Sbjct: 423 LYP 425
Score = 31.3 bits (71), Expect = 0.40
Identities = 16/56 (28%), Positives = 22/56 (39%)
Query: 156 KKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
K + +E E+ + E EEEE E E E E+ E EE+ E
Sbjct: 371 KDSAEYDQEAEDAKVAELISQREEEEALQREAEERLEAEQAERAEEDARLRELYPL 426
Score = 30.1 bits (68), Expect = 0.80
Identities = 14/57 (24%), Positives = 21/57 (36%)
Query: 155 KKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
K + ++ E+ + E EEEE EE E+ E EE+ E
Sbjct: 371 KDSAEYDQEAEDAKVAELISQREEEEALQREAEERLEAEQAERAEEDARLRELYPLP 427
>gnl|CDD|226920 COG4547, CobT, Cobalamin biosynthesis protein CobT
(nicotinate-mononucleotide:5, 6-dimethylbenzimidazole
phosphoribosyltransferase) [Coenzyme metabolism].
Length = 620
Score = 39.8 bits (93), Expect = 6e-04
Identities = 17/48 (35%), Positives = 27/48 (56%)
Query: 164 EEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
+EE+ ++++ E+ E G E EG E EE+E E + E EE E +
Sbjct: 231 ADEEDGDDDQPDNNEDSEAGREESEGSDESEEDEAEATDGEGEEGEMD 278
Score = 38.3 bits (89), Expect = 0.002
Identities = 16/48 (33%), Positives = 28/48 (58%)
Query: 164 EEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
++ EE+ +EE G++++ + E G EE E +E EE+E E + E
Sbjct: 224 DDGIEEDADEEDGDDDQPDNNEDSEAGREESEGSDESEEDEAEATDGE 271
Score = 37.5 bits (87), Expect = 0.003
Identities = 15/48 (31%), Positives = 26/48 (54%)
Query: 164 EEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
+ EE+ +EE+G +++ + E G E E +E EE+E E + E
Sbjct: 225 DGIEEDADEEDGDDDQPDNNEDSEAGREESEGSDESEEDEAEATDGEG 272
Score = 37.5 bits (87), Expect = 0.003
Identities = 17/49 (34%), Positives = 29/49 (59%)
Query: 163 KEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
+E+ +EE+ +++ + E+ G EE G +E EE+E E + E EE E
Sbjct: 228 EEDADEEDGDDDQPDNNEDSEAGREESEGSDESEEDEAEATDGEGEEGE 276
Score = 36.0 bits (83), Expect = 0.011
Identities = 15/46 (32%), Positives = 21/46 (45%)
Query: 164 EEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEE 209
E EE E + EE+E E GE + E E+ E +E +E
Sbjct: 248 EAGREESEGSDESEEDEAEATDGEGEEGEMDAAEASEDSESDESDE 293
Score = 36.0 bits (83), Expect = 0.011
Identities = 17/48 (35%), Positives = 24/48 (50%)
Query: 164 EEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
EE E +E E+E E GE E G + E E+ E +E +E+ E
Sbjct: 249 AGREESEGSDESEEDEAEATDGEGEEGEMDAAEASEDSESDESDEDTE 296
Score = 35.2 bits (81), Expect = 0.022
Identities = 18/48 (37%), Positives = 25/48 (52%)
Query: 164 EEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
E+ E EE EG +E EE +G GEE E + E E+ E +E +
Sbjct: 245 EDSEAGREESEGSDESEEDEAEATDGEGEEGEMDAAEASEDSESDESD 292
Score = 34.0 bits (78), Expect = 0.041
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 164 EEEEEEEEEEEGGEEEEEG--GGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
+++ + E+ E G EE EG E+E + E EE E + E E+ E
Sbjct: 238 DDQPDNNEDSEAGREESEGSDESEEDEAEATDGEGEEGEMDAAEASEDSE 287
Score = 31.4 bits (71), Expect = 0.37
Identities = 14/45 (31%), Positives = 23/45 (51%)
Query: 166 EEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEE 210
EE ++ E +EE+G + + + E EE E +E EE+E
Sbjct: 220 EETGDDGIEEDADEEDGDDDQPDNNEDSEAGREESEGSDESEEDE 264
Score = 31.4 bits (71), Expect = 0.38
Identities = 14/48 (29%), Positives = 20/48 (41%)
Query: 164 EEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
+ E+ E E E +E E E E EE E + E E+ E +
Sbjct: 242 DNNEDSEAGREESEGSDESEEDEAEATDGEGEEGEMDAAEASEDSESD 289
Score = 31.0 bits (70), Expect = 0.45
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Query: 164 EEEEEEE--EEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEE 210
EE E + EE+E + EG GE + E+ E +E +E+ E E
Sbjct: 252 EESEGSDESEEDEAEATDGEGEEGEMDAAEASEDSESDESDEDTETPGE 300
Score = 29.4 bits (66), Expect = 1.4
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 169 EEEEEEGGEEEEEGGGGEEEG--GGEEEEEEEEEEEEEEEEEEEE 211
EE ++G EE+ + G+++ E+ E EE E +E EE+E
Sbjct: 220 EETGDDGIEEDADEEDGDDDQPDNNEDSEAGREESEGSDESEEDE 264
Score = 28.3 bits (63), Expect = 3.4
Identities = 13/44 (29%), Positives = 23/44 (52%)
Query: 168 EEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
EE ++ E+ +E G +++ E+ E EE E +E EE+
Sbjct: 220 EETGDDGIEEDADEEDGDDDQPDNNEDSEAGREESEGSDESEED 263
>gnl|CDD|226894 COG4499, COG4499, Predicted membrane protein [Function unknown].
Length = 434
Score = 39.8 bits (93), Expect = 6e-04
Identities = 23/110 (20%), Positives = 52/110 (47%), Gaps = 17/110 (15%)
Query: 109 LNVMRIVNEPTAAALAYG-------LDKNLKGERNVKLPKMLEPLLVLTLRKKKKKKKKK 161
+N+ R +++ LA + +L G++ +L K L +K + K +
Sbjct: 333 INIARNLDDNDLTLLALTKLYEEVKSNTDLSGDKRQELLKEYNKKLQDYTKKLGEVKDET 392
Query: 162 KKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
EE E + +EE ++EE E++++E+ +E++E+ +++E
Sbjct: 393 DASEEAEAKAKEEKLKQEEN----------EKKQKEQADEDKEKRQKDER 432
>gnl|CDD|130712 TIGR01651, CobT, cobaltochelatase, CobT subunit. This model
describes Pseudomonas denitrificans CobT gene product,
which is a cobalt chelatase subunit that functions in
cobalamin biosynthesis. Cobalamin (vitamin B12) can be
synthesized via several pathways, including an aerobic
pathway (found in Pseudomonas denitrificans) and an
anaerobic pathway (found in P. shermanii and Salmonella
typhimurium). These pathways differ in the point of
cobalt insertion during corrin ring formation. There are
apparently a number of variations on these two pathways,
where the major differences seem to be concerned with
the process of ring contraction. Confusion regarding the
functions of enzymes found in the aerobic vs. anaerobic
pathways has arisen because nonhomologous genes in these
different pathways were given the same gene symbols.
Thus, cobT in the aerobic pathway (P. denitrificans) is
not a homolog of cobT in the anaerobic pathway (S.
typhimurium). It should be noted that E. coli
synthesizes cobalamin only when it is supplied with the
precursor cobinamide, which is a complex intermediate.
Additionally, all E. coli cobalamin synthesis genes
(cobU, cobS and cobT) were named after their Salmonella
typhimurium homologs which function in the anaerobic
cobalamin synthesis pathway. This model describes the
aerobic cobalamin pathway Pseudomonas denitrificans CobT
gene product, which is a cobalt chelatase subunit, with
a MW ~70 kDa. The aerobic pathway cobalt chelatase is a
heterotrimeric, ATP-dependent enzyme that catalyzes
cobalt insertion during cobalamin biosynthesis. The
other two subunits are the P. denitrificans CobS
(TIGR01650) and CobN (pfam02514 CobN/Magnesium
Chelatase) proteins. To avoid potential confusion with
the nonhomologous Salmonella typhimurium/E.coli cobT
gene product, the P. denitrificans gene symbol is not
used in the name of this model [Biosynthesis of
cofactors, prosthetic groups, and carriers, Heme,
porphyrin, and cobalamin].
Length = 600
Score = 39.5 bits (92), Expect = 8e-04
Identities = 18/48 (37%), Positives = 27/48 (56%)
Query: 164 EEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
E+EE+ ++++ E+EE G GE EG +E E + E E EEE
Sbjct: 210 EDEEDGDDDQPTENEQEEQGEGEGEGQEGSAPQESEATDRESESGEEE 257
Score = 35.7 bits (82), Expect = 0.012
Identities = 15/47 (31%), Positives = 26/47 (55%)
Query: 165 EEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
++ E E+EE+G +++ EE+G GE E +E +E E + E
Sbjct: 205 DDTESEDEEDGDDDQPTENEQEEQGEGEGEGQEGSAPQESEATDRES 251
Score = 31.5 bits (71), Expect = 0.32
Identities = 13/53 (24%), Positives = 29/53 (54%)
Query: 158 KKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEE 210
+ +++E+ E E E +EG +E E GEEE + ++++ +E +++
Sbjct: 221 TENEQEEQGEGEGEGQEGSAPQESEATDRESESGEEEMVQSDQDDLPDESDDD 273
Score = 31.1 bits (70), Expect = 0.44
Identities = 14/46 (30%), Positives = 24/46 (52%)
Query: 166 EEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
E E+EE+ GE E + G +E + E E EEE + ++++
Sbjct: 221 TENEQEEQGEGEGEGQEGSAPQESEATDRESESGEEEMVQSDQDDL 266
Score = 29.9 bits (67), Expect = 0.93
Identities = 13/55 (23%), Positives = 30/55 (54%)
Query: 157 KKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
+ +++++ E E E +E +E E E E G EE + ++++ +E +++ E
Sbjct: 221 TENEQEEQGEGEGEGQEGSAPQESEATDRESESGEEEMVQSDQDDLPDESDDDSE 275
Score = 28.4 bits (63), Expect = 3.3
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 9/59 (15%)
Query: 161 KKKEEEEEEEEEEEGGEE---------EEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEE 210
+ E+EE+ E E EG E + E GEEE ++++ +E +++ E E
Sbjct: 221 TENEQEEQGEGEGEGQEGSAPQESEATDRESESGEEEMVQSDQDDLPDESDDDSETPGE 279
>gnl|CDD|223003 PHA03169, PHA03169, hypothetical protein; Provisional.
Length = 413
Score = 39.2 bits (91), Expect = 9e-04
Identities = 15/51 (29%), Positives = 19/51 (37%)
Query: 161 KKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
++ E + E EE GE+EE G GG G E EE
Sbjct: 67 RQTESDTETAEESRHGEKEERGQGGPSGSGSESVGSPTPSPSGSAEELASG 117
Score = 38.4 bits (89), Expect = 0.002
Identities = 7/48 (14%), Positives = 7/48 (14%)
Query: 164 EEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
E G EE G E E
Sbjct: 97 SESVGSPTPSPSGSAEELASGLSPENTSGSSPESPASHSPPPSPPSHP 144
Score = 37.3 bits (86), Expect = 0.004
Identities = 8/48 (16%), Positives = 8/48 (16%)
Query: 164 EEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
EE G E G E E E
Sbjct: 106 SPSGSAEELASGLSPENTSGSSPESPASHSPPPSPPSHPGPHEPAPPE 153
Score = 36.9 bits (85), Expect = 0.006
Identities = 11/58 (18%), Positives = 17/58 (29%)
Query: 154 KKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
+ ++ + E+EE + G E G G EE E E
Sbjct: 72 DTETAEESRHGEKEERGQGGPSGSGSESVGSPTPSPSGSAEELASGLSPENTSGSSPE 129
Score = 36.5 bits (84), Expect = 0.007
Identities = 8/47 (17%), Positives = 13/47 (27%)
Query: 165 EEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
+ +E G + + E E+E E E E
Sbjct: 202 PPPQSPPDEPGEPQSPTPQQAPSPNTQQAVEHEDEPTEPEREGPPFP 248
Score = 36.5 bits (84), Expect = 0.008
Identities = 8/45 (17%), Positives = 14/45 (31%)
Query: 164 EEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEE 208
+ +E E ++ + E E+E E E E
Sbjct: 204 PQSPPDEPGEPQSPTPQQAPSPNTQQAVEHEDEPTEPEREGPPFP 248
Score = 35.7 bits (82), Expect = 0.012
Identities = 9/47 (19%), Positives = 15/47 (31%)
Query: 164 EEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEE 210
+ +E GE + ++ E E+E E E E
Sbjct: 200 SSPPPQSPPDEPGEPQSPTPQQAPSPNTQQAVEHEDEPTEPEREGPP 246
Score = 35.7 bits (82), Expect = 0.013
Identities = 9/48 (18%), Positives = 15/48 (31%)
Query: 164 EEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
E + +E E + ++ E E+E E E E
Sbjct: 196 ETPTSSPPPQSPPDEPGEPQSPTPQQAPSPNTQQAVEHEDEPTEPERE 243
Score = 35.7 bits (82), Expect = 0.014
Identities = 8/48 (16%), Positives = 12/48 (25%)
Query: 164 EEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
E E + + E+ EE E E E +
Sbjct: 144 PGPHEPAPPESHNPSPNQQPSSFLQPSHEDSPEEPEPPTSEPEPDSPG 191
Score = 35.3 bits (81), Expect = 0.017
Identities = 9/59 (15%), Positives = 15/59 (25%)
Query: 152 RKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEE 210
+ +K+++ + E G G EE G E E
Sbjct: 78 ESRHGEKEERGQGGPSGSGSESVGSPTPSPSGSAEELASGLSPENTSGSSPESPASHSP 136
Score = 35.3 bits (81), Expect = 0.018
Identities = 4/47 (8%), Positives = 6/47 (12%)
Query: 165 EEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
E G E E ++
Sbjct: 119 SPENTSGSSPESPASHSPPPSPPSHPGPHEPAPPESHNPSPNQQPSS 165
Score = 34.9 bits (80), Expect = 0.020
Identities = 4/46 (8%), Positives = 5/46 (10%)
Query: 165 EEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEE 210
E E E E +
Sbjct: 116 SGLSPENTSGSSPESPASHSPPPSPPSHPGPHEPAPPESHNPSPNQ 161
Score = 34.9 bits (80), Expect = 0.021
Identities = 6/48 (12%), Positives = 6/48 (12%)
Query: 164 EEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
EE E E E E
Sbjct: 112 EELASGLSPENTSGSSPESPASHSPPPSPPSHPGPHEPAPPESHNPSP 159
Score = 34.6 bits (79), Expect = 0.027
Identities = 8/59 (13%), Positives = 15/59 (25%)
Query: 153 KKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
+ + +K+++ + E G G EE E E
Sbjct: 78 ESRHGEKEERGQGGPSGSGSESVGSPTPSPSGSAEELASGLSPENTSGSSPESPASHSP 136
Score = 34.6 bits (79), Expect = 0.029
Identities = 8/48 (16%), Positives = 12/48 (25%)
Query: 164 EEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
E E ++ + E+ EE E E E
Sbjct: 139 SPPSHPGPHEPAPPESHNPSPNQQPSSFLQPSHEDSPEEPEPPTSEPE 186
Score = 34.6 bits (79), Expect = 0.030
Identities = 5/48 (10%), Positives = 7/48 (14%)
Query: 164 EEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
E E G E E ++
Sbjct: 119 SPENTSGSSPESPASHSPPPSPPSHPGPHEPAPPESHNPSPNQQPSSF 166
Score = 34.2 bits (78), Expect = 0.039
Identities = 7/47 (14%), Positives = 11/47 (23%)
Query: 164 EEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEE 210
E E ++ + E+ EE E E
Sbjct: 138 PSPPSHPGPHEPAPPESHNPSPNQQPSSFLQPSHEDSPEEPEPPTSE 184
Score = 34.2 bits (78), Expect = 0.044
Identities = 4/47 (8%), Positives = 8/47 (17%)
Query: 165 EEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
E ++ + E+ EE
Sbjct: 131 PASHSPPPSPPSHPGPHEPAPPESHNPSPNQQPSSFLQPSHEDSPEE 177
Score = 33.8 bits (77), Expect = 0.047
Identities = 4/47 (8%), Positives = 7/47 (14%)
Query: 164 EEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEE 210
E G E E ++ +
Sbjct: 124 SGSSPESPASHSPPPSPPSHPGPHEPAPPESHNPSPNQQPSSFLQPS 170
Score = 33.8 bits (77), Expect = 0.055
Identities = 4/48 (8%), Positives = 6/48 (12%)
Query: 164 EEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
E E E E ++
Sbjct: 116 SGLSPENTSGSSPESPASHSPPPSPPSHPGPHEPAPPESHNPSPNQQP 163
Score = 33.8 bits (77), Expect = 0.060
Identities = 7/48 (14%), Positives = 7/48 (14%)
Query: 164 EEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
EE E G E E E
Sbjct: 107 PSGSAEELASGLSPENTSGSSPESPASHSPPPSPPSHPGPHEPAPPES 154
Score = 33.4 bits (76), Expect = 0.061
Identities = 8/48 (16%), Positives = 13/48 (27%)
Query: 164 EEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
+ E +E G ++ E E+E E E
Sbjct: 194 QSETPTSSPPPQSPPDEPGEPQSPTPQQAPSPNTQQAVEHEDEPTEPE 241
Score = 33.4 bits (76), Expect = 0.065
Identities = 8/46 (17%), Positives = 12/46 (26%)
Query: 164 EEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEE 209
+ +E E + E E+E E E E
Sbjct: 203 PPQSPPDEPGEPQSPTPQQAPSPNTQQAVEHEDEPTEPEREGPPFP 248
Score = 33.4 bits (76), Expect = 0.068
Identities = 6/48 (12%), Positives = 12/48 (25%)
Query: 164 EEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
E E + G + E +E E + ++
Sbjct: 180 PPTSEPEPDSPGPPQSETPTSSPPPQSPPDEPGEPQSPTPQQAPSPNT 227
Score = 33.4 bits (76), Expect = 0.071
Identities = 8/47 (17%), Positives = 12/47 (25%)
Query: 164 EEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEE 210
E E ++ E EE E E E + +
Sbjct: 148 EPAPPESHNPSPNQQPSSFLQPSHEDSPEEPEPPTSEPEPDSPGPPQ 194
Score = 33.0 bits (75), Expect = 0.087
Identities = 3/48 (6%), Positives = 6/48 (12%)
Query: 164 EEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
E E E ++ +
Sbjct: 121 ENTSGSSPESPASHSPPPSPPSHPGPHEPAPPESHNPSPNQQPSSFLQ 168
Score = 33.0 bits (75), Expect = 0.094
Identities = 9/47 (19%), Positives = 15/47 (31%)
Query: 164 EEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEE 210
E+ EE E E + G + E + +E E +
Sbjct: 172 EDSPEEPEPPTSEPEPDSPGPPQSETPTSSPPPQSPPDEPGEPQSPT 218
Score = 32.6 bits (74), Expect = 0.11
Identities = 9/47 (19%), Positives = 15/47 (31%)
Query: 165 EEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
E+ EE E E E + G + + +E E +
Sbjct: 172 EDSPEEPEPPTSEPEPDSPGPPQSETPTSSPPPQSPPDEPGEPQSPT 218
Score = 32.2 bits (73), Expect = 0.17
Identities = 5/48 (10%), Positives = 7/48 (14%)
Query: 164 EEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
E + E+ EE E
Sbjct: 136 PPPSPPSHPGPHEPAPPESHNPSPNQQPSSFLQPSHEDSPEEPEPPTS 183
Score = 32.2 bits (73), Expect = 0.19
Identities = 4/48 (8%), Positives = 8/48 (16%)
Query: 164 EEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
E E ++ + E+ E
Sbjct: 129 ESPASHSPPPSPPSHPGPHEPAPPESHNPSPNQQPSSFLQPSHEDSPE 176
Score = 31.9 bits (72), Expect = 0.21
Identities = 11/60 (18%), Positives = 14/60 (23%), Gaps = 12/60 (20%)
Query: 164 EEEEEEEEEEEGGEEEE------------EGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
E+ + E + EE G G E G EE E
Sbjct: 63 EQGHRQTESDTETAEESRHGEKEERGQGGPSGSGSESVGSPTPSPSGSAEELASGLSPEN 122
Score = 31.9 bits (72), Expect = 0.25
Identities = 7/52 (13%), Positives = 10/52 (19%), Gaps = 4/52 (7%)
Query: 164 EEEEEEEEEEEGGE----EEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
G E + + E+ EE E E
Sbjct: 133 SHSPPPSPPSHPGPHEPAPPESHNPSPNQQPSSFLQPSHEDSPEEPEPPTSE 184
Score = 31.5 bits (71), Expect = 0.27
Identities = 5/47 (10%), Positives = 10/47 (21%)
Query: 164 EEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEE 210
E + + + E E E + + E
Sbjct: 151 PPESHNPSPNQQPSSFLQPSHEDSPEEPEPPTSEPEPDSPGPPQSET 197
Score = 31.5 bits (71), Expect = 0.30
Identities = 7/48 (14%), Positives = 13/48 (27%)
Query: 164 EEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
EE E E + E + +E E + ++
Sbjct: 174 SPEEPEPPTSEPEPDSPGPPQSETPTSSPPPQSPPDEPGEPQSPTPQQ 221
Score = 31.5 bits (71), Expect = 0.34
Identities = 7/48 (14%), Positives = 12/48 (25%)
Query: 164 EEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
+ E+ EE E E + E + +E
Sbjct: 163 PSSFLQPSHEDSPEEPEPPTSEPEPDSPGPPQSETPTSSPPPQSPPDE 210
Score = 31.5 bits (71), Expect = 0.34
Identities = 7/47 (14%), Positives = 11/47 (23%)
Query: 165 EEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
E E ++ EE E E E + +
Sbjct: 148 EPAPPESHNPSPNQQPSSFLQPSHEDSPEEPEPPTSEPEPDSPGPPQ 194
Score = 31.1 bits (70), Expect = 0.38
Identities = 5/48 (10%), Positives = 9/48 (18%)
Query: 164 EEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
E ++ + E+ EE E
Sbjct: 132 ASHSPPPSPPSHPGPHEPAPPESHNPSPNQQPSSFLQPSHEDSPEEPE 179
Score = 31.1 bits (70), Expect = 0.39
Identities = 5/52 (9%), Positives = 7/52 (13%), Gaps = 4/52 (7%)
Query: 164 EEEEEEEEEEEGGE----EEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
E E G E E ++
Sbjct: 113 ELASGLSPENTSGSSPESPASHSPPPSPPSHPGPHEPAPPESHNPSPNQQPS 164
Score = 30.7 bits (69), Expect = 0.54
Identities = 7/48 (14%), Positives = 11/48 (22%)
Query: 164 EEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
E E ++ + EE E E E +
Sbjct: 146 PHEPAPPESHNPSPNQQPSSFLQPSHEDSPEEPEPPTSEPEPDSPGPP 193
Score = 30.3 bits (68), Expect = 0.80
Identities = 6/47 (12%), Positives = 9/47 (19%)
Query: 165 EEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
E E+ E E E + + E
Sbjct: 151 PPESHNPSPNQQPSSFLQPSHEDSPEEPEPPTSEPEPDSPGPPQSET 197
Score = 29.9 bits (67), Expect = 0.89
Identities = 4/48 (8%), Positives = 11/48 (22%)
Query: 164 EEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
++ + + EE E + + E +
Sbjct: 160 NQQPSSFLQPSHEDSPEEPEPPTSEPEPDSPGPPQSETPTSSPPPQSP 207
Score = 29.6 bits (66), Expect = 1.2
Identities = 10/60 (16%), Positives = 16/60 (26%), Gaps = 12/60 (20%)
Query: 164 EEEEEE----EEEEEGGEEEEEGGGGEEEG--------GGEEEEEEEEEEEEEEEEEEEE 211
E E + + E +E G ++ E E+E E E
Sbjct: 183 SEPEPDSPGPPQSETPTSSPPPQSPPDEPGEPQSPTPQQAPSPNTQQAVEHEDEPTEPER 242
Score = 29.2 bits (65), Expect = 1.8
Identities = 5/48 (10%), Positives = 10/48 (20%)
Query: 164 EEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
++ E+ E E E + + E
Sbjct: 156 NPSPNQQPSSFLQPSHEDSPEEPEPPTSEPEPDSPGPPQSETPTSSPP 203
Score = 27.2 bits (60), Expect = 6.4
Identities = 6/49 (12%), Positives = 11/49 (22%), Gaps = 1/49 (2%)
Query: 164 EEEEEEEEEEEG-GEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
E ++ + EE E E + + E
Sbjct: 152 PESHNPSPNQQPSSFLQPSHEDSPEEPEPPTSEPEPDSPGPPQSETPTS 200
>gnl|CDD|222571 pfam14153, Spore_coat_CotO, Spore coat protein CotO. Bacillus
spores are protected by a protein shell consisting of
over 50 different polypeptides, known as the coat. This
family of proteins has an important morphogenetic role
in coat assembly, it is involved in the assembly of at
least 5 different coat proteins including CotB, CotG,
CotS, CotSA and CotW. It is likely to act at a late
stage of coat assembly.
Length = 185
Score = 38.3 bits (89), Expect = 0.001
Identities = 28/70 (40%), Positives = 43/70 (61%), Gaps = 8/70 (11%)
Query: 150 TLRKKKKKKKKKKKE--------EEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEE 201
T KK +K+++KE +EEE++ E E E+E+E G E E E++E+EE +
Sbjct: 30 TFIIKKADEKEEEKENSDEHVKSKEEEQKIEYEEAEKEKEAGEPEREDIAEQQEKEEIAQ 89
Query: 202 EEEEEEEEEE 211
EEE+EEE E+
Sbjct: 90 EEEKEEEAED 99
>gnl|CDD|220972 pfam11081, DUF2890, Protein of unknown function (DUF2890). This
family is conserved in dsDNA adenoviruses of
vertebrates. The function is not known.
Length = 172
Score = 38.4 bits (89), Expect = 0.001
Identities = 20/56 (35%), Positives = 29/56 (51%)
Query: 152 RKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEE 207
+ KK K + ++EEE+ + EE EE E+ +EE+EE EE EEE
Sbjct: 4 KGNAKKLKVRPPPTKDEEEDWDSQAEEVEEDEEEMEDWEDSLDEEDEEAEEVEEET 59
Score = 37.6 bits (87), Expect = 0.001
Identities = 22/58 (37%), Positives = 29/58 (50%)
Query: 153 KKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEE 210
K KK K ++EEE+ + EE EEE E+ +EE+EE EE EEE
Sbjct: 2 PPKGNAKKLKVRPPPTKDEEEDWDSQAEEVEEDEEEMEDWEDSLDEEDEEAEEVEEET 59
Score = 37.2 bits (86), Expect = 0.002
Identities = 20/58 (34%), Positives = 29/58 (50%)
Query: 154 KKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
K KK K ++EEE + + E +EE + E+ +EE+EE EE EEE
Sbjct: 2 PPKGNAKKLKVRPPPTKDEEEDWDSQAEEVEEDEEEMEDWEDSLDEEDEEAEEVEEET 59
Score = 35.7 bits (82), Expect = 0.008
Identities = 21/59 (35%), Positives = 30/59 (50%)
Query: 151 LRKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEE 209
+ K KK K + ++EEE+ + EE EE E+ +EE+EE EE EEE
Sbjct: 1 MPPKGNAKKLKVRPPPTKDEEEDWDSQAEEVEEDEEEMEDWEDSLDEEDEEAEEVEEET 59
>gnl|CDD|219900 pfam08553, VID27, VID27 cytoplasmic protein. This is a family of
fungal and plant proteins and contains many hypothetical
proteins. VID27 is a cytoplasmic protein that plays a
potential role in vacuolar protein degradation.
Length = 794
Score = 39.0 bits (91), Expect = 0.001
Identities = 19/55 (34%), Positives = 30/55 (54%)
Query: 156 KKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEE 210
K+K K KE E++ + E E+ ++ E+EEEEEEE+E+E +E
Sbjct: 358 KQKWTKAKETEQDYILDAFSALEIEDANTERDDEEEEDEEEEEEEDEDEGPSKEH 412
Score = 37.4 bits (87), Expect = 0.004
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Query: 152 RKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
K+K K K+ E++ + E E+ ++E EEE+EEEEEEE+E+E +E
Sbjct: 355 TLNKQKWTKAKETEQDYILDAFSALEIEDANTERDDE---EEEDEEEEEEEDEDEGPSKE 411
Score = 37.0 bits (86), Expect = 0.006
Identities = 19/43 (44%), Positives = 29/43 (67%)
Query: 164 EEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEE 206
E ++EEEE+EE EEE+E G +E +EE EE++ E + E+
Sbjct: 387 ERDDEEEEDEEEEEEEDEDEGPSKEHSDDEEFEEDDVESKYED 429
Score = 36.7 bits (85), Expect = 0.008
Identities = 20/44 (45%), Positives = 28/44 (63%), Gaps = 3/44 (6%)
Query: 162 KKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEE 205
EEEE+EEEEE EE+E+ G +E EE EE++ E + E+
Sbjct: 389 DDEEEEDEEEEE---EEDEDEGPSKEHSDDEEFEEDDVESKYED 429
Score = 35.9 bits (83), Expect = 0.011
Identities = 20/48 (41%), Positives = 32/48 (66%), Gaps = 4/48 (8%)
Query: 164 EEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
E ++EEEE+E EEEE+ E+EG +E ++EE EE++ E + E+
Sbjct: 386 TERDDEEEEDEEEEEEED----EDEGPSKEHSDDEEFEEDDVESKYED 429
Score = 34.0 bits (78), Expect = 0.059
Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 4/48 (8%)
Query: 164 EEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
E ++EEEE EEEEE E+E G +E ++EE EE++ E +
Sbjct: 384 ANTERDDEEEEDEEEEEE----EDEDEGPSKEHSDDEEFEEDDVESKY 427
Score = 33.6 bits (77), Expect = 0.068
Identities = 20/62 (32%), Positives = 32/62 (51%)
Query: 150 TLRKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEE 209
TL K+K K K+ +++ + E+ EEE EEEEEE+E+E +E +
Sbjct: 355 TLNKQKWTKAKETEQDYILDAFSALEIEDANTERDDEEEEDEEEEEEEDEDEGPSKEHSD 414
Query: 210 EE 211
+E
Sbjct: 415 DE 416
Score = 33.2 bits (76), Expect = 0.10
Identities = 18/60 (30%), Positives = 31/60 (51%)
Query: 152 RKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
++K K K+ +++ + E + E EEE EEEEE+E+E +E ++EE
Sbjct: 358 KQKWTKAKETEQDYILDAFSALEIEDANTERDDEEEEDEEEEEEEDEDEGPSKEHSDDEE 417
Score = 32.0 bits (73), Expect = 0.23
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 165 EEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEE 210
E+ E ++E E+EEE EEE E +E ++EE EE++ E
Sbjct: 382 EDANTERDDEEEEDEEE---EEEEDEDEGPSKEHSDDEEFEEDDVE 424
>gnl|CDD|224188 COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase subunit I [Energy
production and conversion].
Length = 660
Score = 38.9 bits (91), Expect = 0.001
Identities = 26/102 (25%), Positives = 43/102 (42%), Gaps = 2/102 (1%)
Query: 108 GLNVMRIVNEPTAAALAYGLDKNLKGERNVKLPKM--LEPLLVLTLRKKKKKKKKKKKEE 165
G ++ + + A +A +L E L + LE L + + +K + + K E
Sbjct: 39 GEKGLKELEKLKVAEVAQISLSSLLSEVLDYLRSVKGLEGRLFILPEEVEKLEAELKSLE 98
Query: 166 EEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEE 207
E + E+ E EE EE +EE E+ E+ EE E
Sbjct: 99 EVIKPAEKFSSEVEELTRKLEERLSELDEELEDLEDLLEELE 140
>gnl|CDD|216652 pfam01698, FLO_LFY, Floricaula / Leafy protein. This family
consists of various plant development proteins which are
homologues of floricaula (FLO) and Leafy (LFY) proteins
which are floral meristem identity proteins. Mutations
in the sequences of these proteins affect flower and
leaf development.
Length = 382
Score = 38.8 bits (91), Expect = 0.001
Identities = 16/45 (35%), Positives = 33/45 (73%), Gaps = 2/45 (4%)
Query: 152 RKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEE 196
+KK++KK+++K+ +E E+++++ E+++ GGG EGG E + E
Sbjct: 183 KKKQRKKQRRKRSKELREDDDDDEDEDDDGEGGG--EGGEERQRE 225
Score = 36.5 bits (85), Expect = 0.006
Identities = 12/36 (33%), Positives = 24/36 (66%)
Query: 151 LRKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGE 186
RKK+++K+ K+ E+++++E+E+ E GG E
Sbjct: 186 QRKKQRRKRSKELREDDDDDEDEDDDGEGGGEGGEE 221
>gnl|CDD|217049 pfam02459, Adeno_terminal, Adenoviral DNA terminal protein. This
protein is covalently attached to the terminii of
replicating DNA in vivo.
Length = 548
Score = 38.9 bits (91), Expect = 0.001
Identities = 22/44 (50%), Positives = 22/44 (50%), Gaps = 10/44 (22%)
Query: 166 EEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEE 209
E EEE EEEE EEEEEEEEEEE EEE
Sbjct: 300 PSPPEPEEEEEEEEEV----------PEEEEEEEEEEERTFEEE 333
Score = 38.5 bits (90), Expect = 0.001
Identities = 22/44 (50%), Positives = 22/44 (50%), Gaps = 10/44 (22%)
Query: 165 EEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEE 208
E EEEE EEE EEEEEEEEEEE EEE
Sbjct: 300 PSPPEPEEEEEEEEEVP----------EEEEEEEEEEERTFEEE 333
Score = 37.7 bits (88), Expect = 0.003
Identities = 22/44 (50%), Positives = 22/44 (50%), Gaps = 10/44 (22%)
Query: 164 EEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEE 207
E EEEEE EE E EEEEEEEEEE EEE
Sbjct: 300 PSPPEPEEEEEEEEEVPE----------EEEEEEEEEERTFEEE 333
Score = 37.3 bits (87), Expect = 0.004
Identities = 26/56 (46%), Positives = 32/56 (57%), Gaps = 10/56 (17%)
Query: 149 LTLRKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEE 204
L LR++++++ E EEEEEEEE EEEE EEEEEEE EEE
Sbjct: 288 LPLRRRRRRRPPPSPPEPEEEEEEEEEVPEEEE----------EEEEEEERTFEEE 333
Score = 36.9 bits (86), Expect = 0.005
Identities = 20/28 (71%), Positives = 20/28 (71%), Gaps = 2/28 (7%)
Query: 186 EEEGGGEEEEEEEEEEEEEEEEE--EEE 211
EEE EEE EEEEEEEEEEE EEE
Sbjct: 306 EEEEEEEEEVPEEEEEEEEEEERTFEEE 333
Score = 36.5 bits (85), Expect = 0.007
Identities = 17/20 (85%), Positives = 17/20 (85%)
Query: 192 EEEEEEEEEEEEEEEEEEEE 211
EEEEEEEEE EEEEEEEE
Sbjct: 305 PEEEEEEEEEVPEEEEEEEE 324
Score = 36.5 bits (85), Expect = 0.008
Identities = 17/25 (68%), Positives = 17/25 (68%)
Query: 186 EEEGGGEEEEEEEEEEEEEEEEEEE 210
EE EEEE EEEEEEEEEEE
Sbjct: 305 PEEEEEEEEEVPEEEEEEEEEEERT 329
Score = 36.2 bits (84), Expect = 0.008
Identities = 18/26 (69%), Positives = 18/26 (69%)
Query: 186 EEEGGGEEEEEEEEEEEEEEEEEEEE 211
E E EEEEE EEEEEEEEEEE
Sbjct: 304 EPEEEEEEEEEVPEEEEEEEEEEERT 329
Score = 34.6 bits (80), Expect = 0.028
Identities = 16/20 (80%), Positives = 16/20 (80%)
Query: 192 EEEEEEEEEEEEEEEEEEEE 211
E EEEEEEEEE EEEEEE
Sbjct: 303 PEPEEEEEEEEEVPEEEEEE 322
Score = 33.5 bits (77), Expect = 0.076
Identities = 15/20 (75%), Positives = 15/20 (75%)
Query: 192 EEEEEEEEEEEEEEEEEEEE 211
E EEEEEEEEE EEEEE
Sbjct: 302 PPEPEEEEEEEEEVPEEEEE 321
Score = 31.9 bits (73), Expect = 0.20
Identities = 14/20 (70%), Positives = 14/20 (70%)
Query: 192 EEEEEEEEEEEEEEEEEEEE 211
E EEEEEEEEE EEEE
Sbjct: 301 SPPEPEEEEEEEEEVPEEEE 320
Score = 30.4 bits (69), Expect = 0.62
Identities = 13/20 (65%), Positives = 13/20 (65%)
Query: 192 EEEEEEEEEEEEEEEEEEEE 211
E EEEEEEEEE EEE
Sbjct: 300 PSPPEPEEEEEEEEEVPEEE 319
>gnl|CDD|217476 pfam03286, Pox_Ag35, Pox virus Ag35 surface protein.
Length = 198
Score = 37.8 bits (88), Expect = 0.001
Identities = 18/58 (31%), Positives = 29/58 (50%)
Query: 153 KKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEE 210
KK KKK K+K EEE++ E ++ EE E E G+ +E + + E++
Sbjct: 66 KKSKKKDKEKLTEEEKKPESDDDKTEENENDPDNNEESGDSQESASANSLSDIDNEDD 123
Score = 35.9 bits (83), Expect = 0.006
Identities = 21/72 (29%), Positives = 34/72 (47%)
Query: 138 KLPKMLEPLLVLTLRKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEE 197
K + P T +K KKK K+K EEE++ E +++ EE E EE G +E
Sbjct: 52 KKKRPTTPRKPATTKKSKKKDKEKLTEEEKKPESDDDKTEENENDPDNNEESGDSQESAS 111
Query: 198 EEEEEEEEEEEE 209
+ + E++
Sbjct: 112 ANSLSDIDNEDD 123
Score = 32.4 bits (74), Expect = 0.10
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 11/62 (17%)
Query: 150 TLRKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEE 209
T RK KK KKK++E+ EEE++ ++++ EE E + + EE +
Sbjct: 58 TPRKPATTKKSKKKDKEKLTEEEKKPESDDDK-----------TEENENDPDNNEESGDS 106
Query: 210 EE 211
+E
Sbjct: 107 QE 108
>gnl|CDD|179712 PRK04019, rplP0, acidic ribosomal protein P0; Validated.
Length = 330
Score = 37.5 bits (88), Expect = 0.002
Identities = 20/41 (48%), Positives = 26/41 (63%)
Query: 171 EEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
+++ EE +E + + EEEEEEEEEEEEEE EEE
Sbjct: 280 DKDALDEELKEVLSAQAQAAAAEEEEEEEEEEEEEEPSEEE 320
Score = 36.0 bits (84), Expect = 0.008
Identities = 23/66 (34%), Positives = 30/66 (45%), Gaps = 12/66 (18%)
Query: 120 AAALAYGLDKNLKGERNVKLPKMLEPLLVLTLRKKKKKKKKKKKEEEEEEEEEEEGGEEE 179
A ALA L K + +L ++L + + +EEEEEEEEEEE E
Sbjct: 271 ALALAAALAD--KDALDEELKEVLSA----------QAQAAAAEEEEEEEEEEEEEEPSE 318
Query: 180 EEGGGG 185
EE G
Sbjct: 319 EEAAAG 324
>gnl|CDD|215601 PLN03142, PLN03142, Probable chromatin-remodeling complex ATPase
chain; Provisional.
Length = 1033
Score = 37.9 bits (88), Expect = 0.003
Identities = 16/48 (33%), Positives = 26/48 (54%)
Query: 164 EEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
EE+ + EE EEE E +++E E+E+E+EE++EE
Sbjct: 2 EEQVNTQANEEEDEEELEAVARSAGSDSDDDEVPAEDEDEDEEDDEEA 49
Score = 37.1 bits (86), Expect = 0.005
Identities = 16/49 (32%), Positives = 25/49 (51%)
Query: 162 KKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEE 210
+ EEE+EEE E +E +E+E+EE++EE E + E
Sbjct: 8 QANEEEDEEELEAVARSAGSDSDDDEVPAEDEDEDEEDDEEAESPAKAE 56
Score = 36.7 bits (85), Expect = 0.006
Identities = 17/49 (34%), Positives = 27/49 (55%)
Query: 163 KEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
+ EEE+EEE E ++E E+E+E+EE++EE E + E
Sbjct: 8 QANEEEDEEELEAVARSAGSDSDDDEVPAEDEDEDEEDDEEAESPAKAE 56
Score = 36.7 bits (85), Expect = 0.006
Identities = 16/48 (33%), Positives = 27/48 (56%)
Query: 164 EEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
EEE+ + E +EEE G +++E E+E+E+EE++EE
Sbjct: 1 EEEQVNTQANEEEDEEELEAVARSAGSDSDDDEVPAEDEDEDEEDDEE 48
Score = 36.3 bits (84), Expect = 0.008
Identities = 16/48 (33%), Positives = 25/48 (52%)
Query: 164 EEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
E+ + EEE EE E ++E E+E+E+EE++EE E
Sbjct: 3 EQVNTQANEEEDEEELEAVARSAGSDSDDDEVPAEDEDEDEEDDEEAE 50
Score = 29.4 bits (66), Expect = 1.6
Identities = 15/32 (46%), Positives = 21/32 (65%)
Query: 154 KKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGG 185
KK K + + + EEEE+EE +EEE+G GG
Sbjct: 122 KKAKGRGRHASKLTEEEEDEEYLKEEEDGLGG 153
>gnl|CDD|221641 pfam12569, NARP1, NMDA receptor-regulated protein 1. This domain
family is found in eukaryotes, and is approximately 40
amino acids in length. The family is found in
association with pfam07719, pfam00515. There is a single
completely conserved residue L that may be functionally
important. NARP1 is the mammalian homologue of a yeast
N-terminal acetyltransferase that regulates entry into
the G(0) phase of the cell cycle.
Length = 516
Score = 37.6 bits (88), Expect = 0.003
Identities = 12/50 (24%), Positives = 30/50 (60%)
Query: 153 KKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEE 202
++KK +KK++K E++ E+EE E +++ ++ G + E ++ + +
Sbjct: 410 ERKKLRKKQRKAEKKAEKEEAEKAAAKKKAEAAAKKAKGPDGETKKVDPD 459
Score = 34.1 bits (79), Expect = 0.037
Identities = 12/38 (31%), Positives = 22/38 (57%)
Query: 151 LRKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEE 188
LRKK++K +KK ++EE E+ ++ E + G +
Sbjct: 414 LRKKQRKAEKKAEKEEAEKAAAKKKAEAAAKKAKGPDG 451
>gnl|CDD|220377 pfam09747, DUF2052, Coiled-coil domain containing protein
(DUF2052). This entry is of sequences of two conserved
domains separated by a region of low complexity,
spanning some 200 residues. The function is unknown.
Length = 178
Score = 36.6 bits (85), Expect = 0.004
Identities = 24/69 (34%), Positives = 37/69 (53%)
Query: 143 LEPLLVLTLRKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEE 202
L +L +L +++ + + +++EEEE EEEE EEE EE G EEEEE+ +
Sbjct: 56 LSGVLESSLDREEARLELLEQQEEEESAEEEEEDPEEENEEEEEEYQRGPFGEEEEEDGD 115
Query: 203 EEEEEEEEE 211
+E E
Sbjct: 116 SYDELPTPE 124
Score = 28.9 bits (65), Expect = 1.5
Identities = 22/61 (36%), Positives = 33/61 (54%)
Query: 151 LRKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEE 210
L +++++++ EEEEE+ EEE EEEE G E E+ + +E EE EE
Sbjct: 71 LELLEQQEEEESAEEEEEDPEEENEEEEEEYQRGPFGEEEEEDGDSYDELPTPEEREELR 130
Query: 211 E 211
E
Sbjct: 131 E 131
Score = 27.0 bits (60), Expect = 6.0
Identities = 22/47 (46%), Positives = 26/47 (55%)
Query: 164 EEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEE 210
EEE+ EEE EE EE + G GEEE + +E EE EE EE
Sbjct: 86 EEEDPEEENEEEEEEYQRGPFGEEEEEDGDSYDELPTPEEREELREE 132
>gnl|CDD|219124 pfam06658, DUF1168, Protein of unknown function (DUF1168). This
family consists of several hypothetical eukaryotic
proteins of unknown function.
Length = 142
Score = 35.8 bits (83), Expect = 0.004
Identities = 23/53 (43%), Positives = 36/53 (67%)
Query: 152 RKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEE 204
R+KKK+KKKKKK+ ++ ++EE+ G + E EEE G E+++EE E E+
Sbjct: 90 RQKKKQKKKKKKKAKKGNKKEEKEGSKSSEESSDEEEEGEEDKQEEPVEIMEK 142
Score = 34.3 bits (79), Expect = 0.016
Identities = 21/60 (35%), Positives = 39/60 (65%)
Query: 150 TLRKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEE 209
T +K+ K++KKK+K++++++ ++ EE+E EE EEE EE+++EE E E+
Sbjct: 83 TAKKRAKRQKKKQKKKKKKKAKKGNKKEEKEGSKSSEESSDEEEEGEEDKQEEPVEIMEK 142
Score = 33.5 bits (77), Expect = 0.032
Identities = 22/59 (37%), Positives = 41/59 (69%)
Query: 152 RKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEE 210
KK+ K++KKK++++++++ ++ +EE+EG EE EEEE EE+++EE E E+
Sbjct: 84 AKKRAKRQKKKQKKKKKKKAKKGNKKEEKEGSKSSEESSDEEEEGEEDKQEEPVEIMEK 142
Score = 31.9 bits (73), Expect = 0.10
Identities = 21/58 (36%), Positives = 42/58 (72%)
Query: 154 KKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
KK+ K++KKK++++++++ ++G ++EE+ G E +EEEE EE+++EE E E+
Sbjct: 85 KKRAKRQKKKQKKKKKKKAKKGNKKEEKEGSKSSEESSDEEEEGEEDKQEEPVEIMEK 142
>gnl|CDD|185618 PTZ00438, PTZ00438, gamete antigen 27/25-like protein; Provisional.
Length = 374
Score = 37.0 bits (85), Expect = 0.004
Identities = 22/61 (36%), Positives = 38/61 (62%)
Query: 151 LRKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEE 210
L K ++++ ++EEEE+E+ E EE EE EEE +E+ E+++E+E + E +E
Sbjct: 93 LNIIVKNEEERGTQKEEEEDEDVEEIEEVEEVEVVEEEYDDDEDSEKDDEKESDAEGDEN 152
Query: 211 E 211
E
Sbjct: 153 E 153
Score = 26.9 bits (59), Expect = 8.5
Identities = 18/57 (31%), Positives = 31/57 (54%)
Query: 148 VLTLRKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEE 204
V ++ +K++++ E+ EE EE EE EEE E+ +E+E + E +E E
Sbjct: 97 VKNEEERGTQKEEEEDEDVEEIEEVEEVEVVEEEYDDDEDSEKDDEKESDAEGDENE 153
>gnl|CDD|220135 pfam09184, PPP4R2, PPP4R2. PPP4R2 (protein phosphatase 4 core
regulatory subunit R2) is the regulatory subunit of the
histone H2A phosphatase complex. It has been shown to
confer resistance to the anticancer drug cisplatin in
yeast, and may confer resistance in higher eukaryotes.
Length = 285
Score = 37.1 bits (86), Expect = 0.004
Identities = 23/53 (43%), Positives = 36/53 (67%), Gaps = 10/53 (18%)
Query: 159 KKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
K KK ++EE+++++ + EE+E +E+EEEEE EEEEEEE+E+E
Sbjct: 243 KNKKSDDEEDDDQDGDYVEEKE----------LKEDEEEEETEEEEEEEDEDE 285
Score = 28.6 bits (64), Expect = 2.2
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 9/62 (14%)
Query: 159 KKKKKEEEEEEEEEEEGGEEEEEGGGG---------EEEGGGEEEEEEEEEEEEEEEEEE 209
K K EE E+E + +++ G EE+ + + EE+E +E+EEEEE
Sbjct: 214 KNKSLEEYYEKESSDAAASQDDGPKGSDVKNKKSDDEEDDDQDGDYVEEKELKEDEEEEE 273
Query: 210 EE 211
E
Sbjct: 274 TE 275
Score = 28.3 bits (63), Expect = 2.6
Identities = 19/48 (39%), Positives = 29/48 (60%), Gaps = 5/48 (10%)
Query: 153 KKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEE 200
K KK ++ +++ + EE+E E+EEE EE EEEEE+E+E
Sbjct: 243 KNKKSDDEEDDDQDGDYVEEKELKEDEEE-----EETEEEEEEEDEDE 285
Score = 27.5 bits (61), Expect = 4.5
Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 10/65 (15%)
Query: 157 KKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEE----------EEEEEEE 206
K K ++ E+E + ++ +G + + +EE+++++ E+EEEEE
Sbjct: 214 KNKSLEEYYEKESSDAAASQDDGPKGSDVKNKKSDDEEDDDQDGDYVEEKELKEDEEEEE 273
Query: 207 EEEEE 211
EEEE
Sbjct: 274 TEEEE 278
>gnl|CDD|215774 pfam00183, HSP90, Hsp90 protein.
Length = 529
Score = 36.7 bits (85), Expect = 0.006
Identities = 23/45 (51%), Positives = 31/45 (68%), Gaps = 3/45 (6%)
Query: 167 EEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
E+E E+E EEEEE +EE EEE+ ++EEE +EEEE+EE
Sbjct: 28 EKEVEKEVPDEEEEEE---KEEKKEEEEKTTDKEEEVDEEEEKEE 69
Score = 35.5 bits (82), Expect = 0.013
Identities = 21/45 (46%), Positives = 30/45 (66%), Gaps = 4/45 (8%)
Query: 163 KEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEE 207
KE E+E +EEE E+EE+ +EE ++EEE +EEEE+EE
Sbjct: 29 KEVEKEVPDEEEEEEKEEK----KEEEEKTTDKEEEVDEEEEKEE 69
Score = 34.7 bits (80), Expect = 0.030
Identities = 17/41 (41%), Positives = 26/41 (63%)
Query: 162 KKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEE 202
K+ E+E +EEEE +EE++ + EE +EEEE+EE
Sbjct: 29 KEVEKEVPDEEEEEEKEEKKEEEEKTTDKEEEVDEEEEKEE 69
Score = 33.6 bits (77), Expect = 0.063
Identities = 22/51 (43%), Positives = 33/51 (64%), Gaps = 10/51 (19%)
Query: 158 KKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEE 208
K+ +K+ +EEEEEE+E +EEEE + ++EEE +EEEE+EE
Sbjct: 29 KEVEKEVPDEEEEEEKEEKKEEEE----------KTTDKEEEVDEEEEKEE 69
Score = 32.0 bits (73), Expect = 0.19
Identities = 22/51 (43%), Positives = 33/51 (64%), Gaps = 10/51 (19%)
Query: 156 KKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEE 206
K+ +K+ +EEEEEE+EE+ EEE+ ++EEE +EEEE+EE
Sbjct: 29 KEVEKEVPDEEEEEEKEEKKEEEEKT----------TDKEEEVDEEEEKEE 69
Score = 28.6 bits (64), Expect = 2.3
Identities = 14/45 (31%), Positives = 26/45 (57%)
Query: 160 KKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEE 204
++K+E++EEEE+ + EE +E EE+ ++ +E E E
Sbjct: 42 EEKEEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKVKETTTEWEL 86
Score = 27.4 bits (61), Expect = 6.5
Identities = 15/43 (34%), Positives = 28/43 (65%)
Query: 153 KKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEE 195
K++KK++++K ++EEE +EEE EE+++ +E E E
Sbjct: 44 KEEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKVKETTTEWEL 86
Score = 27.4 bits (61), Expect = 6.9
Identities = 11/28 (39%), Positives = 23/28 (82%)
Query: 154 KKKKKKKKKKEEEEEEEEEEEGGEEEEE 181
++K++KK+++E+ ++EEE + EE+EE
Sbjct: 42 EEKEEKKEEEEKTTDKEEEVDEEEEKEE 69
>gnl|CDD|222792 PHA00435, PHA00435, capsid assembly protein.
Length = 306
Score = 36.4 bits (84), Expect = 0.006
Identities = 21/42 (50%), Positives = 24/42 (57%)
Query: 169 EEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEE 210
E++EG E GEEE E EE+EEEE EEE EE E
Sbjct: 63 FGEDDEGRIEVRISEDGEEEEVEEGEEDEEEEGEEESEEFEP 104
Score = 34.4 bits (79), Expect = 0.030
Identities = 19/48 (39%), Positives = 25/48 (52%)
Query: 164 EEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
E ++ + E++EG EEEE EE EE+EEEE EEE
Sbjct: 51 ETSDDPYGNPDPFGEDDEGRIEVRISEDGEEEEVEEGEEDEEEEGEEE 98
Score = 32.1 bits (73), Expect = 0.18
Identities = 19/48 (39%), Positives = 23/48 (47%)
Query: 164 EEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
E++E E E+ EE E E EEE EEE EE E + EE
Sbjct: 64 GEDDEGRIEVRISEDGEEEEVEEGEEDEEEEGEEESEEFEPLGDTPEE 111
Score = 31.7 bits (72), Expect = 0.22
Identities = 18/50 (36%), Positives = 25/50 (50%)
Query: 162 KKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
+ E ++ E++ G E + EEEE EE EE+EEEE EE
Sbjct: 48 AEPETSDDPYGNPDPFGEDDEGRIEVRISEDGEEEEVEEGEEDEEEEGEE 97
Score = 29.8 bits (67), Expect = 1.1
Identities = 23/46 (50%), Positives = 25/46 (54%)
Query: 164 EEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEE 209
EEEE EE EE EEE E E E G+ EE E E+ EE EE
Sbjct: 79 GEEEEVEEGEEDEEEEGEEESEEFEPLGDTPEELTEASEQLEEHEE 124
>gnl|CDD|227466 COG5137, COG5137, Histone chaperone involved in gene silencing
[Transcription / Chromatin structure and dynamics].
Length = 279
Score = 36.1 bits (83), Expect = 0.007
Identities = 22/47 (46%), Positives = 27/47 (57%)
Query: 164 EEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEE 210
EEEE EE + EEE+E G + G G E EEEEEE E ++ E
Sbjct: 177 EEEERLEESDGREEEEDEEVGSDSYGEGNRELNEEEEEEAEGSDDGE 223
Score = 34.2 bits (78), Expect = 0.038
Identities = 25/53 (47%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
Query: 163 KEEEEEEEEEEEGGEEEEEGGGGEEE----GGGEEEEEEEEEEEEEEEEEEEE 211
+E EEEEEE EG ++ E+ E E GEEEE EEE E E EEE
Sbjct: 206 RELNEEEEEEAEGSDDGEDVVDYEGERIDKKQGEEEEMEEEVINLFEIEWEEE 258
Score = 32.3 bits (73), Expect = 0.13
Identities = 17/52 (32%), Positives = 27/52 (51%)
Query: 160 KKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
+++ EE + EEEE+ + G G E EEEEE E ++ E+ + E
Sbjct: 179 EERLEESDGREEEEDEEVGSDSYGEGNRELNEEEEEEAEGSDDGEDVVDYEG 230
Score = 31.1 bits (70), Expect = 0.34
Identities = 17/53 (32%), Positives = 28/53 (52%)
Query: 159 KKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
+++ +E + EEEE+E + G G E EEEE E ++ E+ + E E
Sbjct: 179 EERLEESDGREEEEDEEVGSDSYGEGNRELNEEEEEEAEGSDDGEDVVDYEGE 231
Score = 30.7 bits (69), Expect = 0.42
Identities = 19/49 (38%), Positives = 27/49 (55%)
Query: 162 KKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEE 210
++EEEE E ++ + EG +++ G EEE EEE E E EEE
Sbjct: 210 EEEEEEAEGSDDGEDVVDYEGERIDKKQGEEEEMEEEVINLFEIEWEEE 258
Score = 30.7 bits (69), Expect = 0.51
Identities = 17/52 (32%), Positives = 25/52 (48%)
Query: 160 KKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
+ + E E EEEE G + E + E E ++++ EEEE EEE
Sbjct: 195 EVGSDSYGEGNRELNEEEEEEAEGSDDGEDVVDYEGERIDKKQGEEEEMEEE 246
Score = 28.8 bits (64), Expect = 1.8
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 14/68 (20%)
Query: 156 KKKKKKKKEEEEEEEEE--------------EEGGEEEEEGGGGEEEGGGEEEEEEEEEE 201
+++ ++ EEEE+EE EE EE E GE+ E E ++++
Sbjct: 179 EERLEESDGREEEEDEEVGSDSYGEGNRELNEEEEEEAEGSDDGEDVVDYEGERIDKKQG 238
Query: 202 EEEEEEEE 209
EEEE EEE
Sbjct: 239 EEEEMEEE 246
Score = 28.0 bits (62), Expect = 3.4
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 177 EEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
+E+ + + EEEE EE + EEEE+EE
Sbjct: 161 DEDNDEAPPAQPDVDNEEEERLEESDGREEEEDEE 195
Score = 27.7 bits (61), Expect = 4.3
Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 9/58 (15%)
Query: 163 KEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEE---------EEEEEEEEEEEEE 211
+E+ +E + + EE EE G EEEE+EE E EEEEEE E
Sbjct: 160 NDEDNDEAPPAQPDVDNEEEERLEESDGREEEEDEEVGSDSYGEGNRELNEEEEEEAE 217
Score = 27.7 bits (61), Expect = 4.6
Identities = 12/43 (27%), Positives = 20/43 (46%)
Query: 167 EEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEE 209
+ +E+ + + EEE EE + EEEE+EE +
Sbjct: 158 WDNDEDNDEAPPAQPDVDNEEEERLEESDGREEEEDEEVGSDS 200
>gnl|CDD|217203 pfam02724, CDC45, CDC45-like protein. CDC45 is an essential gene
required for initiation of DNA replication in S.
cerevisiae, forming a complex with MCM5/CDC46.
Homologues of CDC45 have been identified in human, mouse
and smut fungus among others.
Length = 583
Score = 36.5 bits (85), Expect = 0.008
Identities = 11/49 (22%), Positives = 28/49 (57%)
Query: 163 KEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
+ EEE ++E ++ +++ E +EE+EE + E++E++++
Sbjct: 103 DGDIEEELQDEPRYDDAYRDLEEDDDDDEESDEEDEESSKSEDDEDDDD 151
Score = 35.0 bits (81), Expect = 0.021
Identities = 12/48 (25%), Positives = 30/48 (62%)
Query: 164 EEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
EE ++E ++ + EE +EE E+EE + E++E++++++++
Sbjct: 108 EELQDEPRYDDAYRDLEEDDDDDEESDEEDEESSKSEDDEDDDDDDDD 155
Score = 33.4 bits (77), Expect = 0.065
Identities = 10/50 (20%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Query: 162 KKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
+ + EE+++ EE +E +EE E++E++++++++++ E
Sbjct: 116 YDDAYRDLEEDDDDDEESDEE---DEESSKSEDDEDDDDDDDDDDIATRE 162
Score = 33.4 bits (77), Expect = 0.083
Identities = 11/51 (21%), Positives = 29/51 (56%)
Query: 158 KKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEE 208
++ EE+++++EE EE+EE E++ ++++++++ E E
Sbjct: 116 YDDAYRDLEEDDDDDEESDEEDEESSKSEDDEDDDDDDDDDDIATRERSLE 166
Score = 31.5 bits (72), Expect = 0.27
Identities = 10/51 (19%), Positives = 26/51 (50%)
Query: 157 KKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEE 207
+ EE+++++EE E+EE ++E +++++++ E E
Sbjct: 116 YDDAYRDLEEDDDDDEESDEEDEESSKSEDDEDDDDDDDDDDIATRERSLE 166
Score = 31.5 bits (72), Expect = 0.30
Identities = 10/48 (20%), Positives = 28/48 (58%)
Query: 164 EEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
+ EEE ++E + + +++ +EE+EE + E++E+++++
Sbjct: 105 DIEEELQDEPRYDDAYRDLEEDDDDDEESDEEDEESSKSEDDEDDDDD 152
Score = 30.7 bits (70), Expect = 0.55
Identities = 12/48 (25%), Positives = 29/48 (60%)
Query: 164 EEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
EEE ++E + + E ++E EE+EE + E++E+++++++
Sbjct: 107 EEELQDEPRYDDAYRDLEEDDDDDEESDEEDEESSKSEDDEDDDDDDD 154
Score = 28.4 bits (64), Expect = 3.2
Identities = 12/48 (25%), Positives = 23/48 (47%)
Query: 164 EEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
++EE +EE+EE + E++ +++ + E E E EE
Sbjct: 129 DDEESDEEDEESSKSEDDEDDDDDDDDDDIATRERSLERRRRRREWEE 176
Score = 28.4 bits (64), Expect = 3.3
Identities = 13/48 (27%), Positives = 22/48 (45%)
Query: 164 EEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
EE +EE+EE E++E+ +++ E E E EE+
Sbjct: 131 EESDEEDEESSKSEDDEDDDDDDDDDDIATRERSLERRRRRREWEEKR 178
Score = 26.9 bits (60), Expect = 9.3
Identities = 12/47 (25%), Positives = 22/47 (46%)
Query: 164 EEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEE 210
+EE+EE + E E++++ ++ E E E EE+ E
Sbjct: 134 DEEDEESSKSEDDEDDDDDDDDDDIATRERSLERRRRRREWEEKRAE 180
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional.
Length = 2084
Score = 36.7 bits (84), Expect = 0.008
Identities = 23/58 (39%), Positives = 37/58 (63%)
Query: 154 KKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
KKK ++ KKKE EE+++ EE EEE EE EE++++ EE ++ EE+E++
Sbjct: 1632 KKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKK 1689
Score = 36.3 bits (83), Expect = 0.011
Identities = 22/56 (39%), Positives = 34/56 (60%)
Query: 153 KKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEE 208
+ KKK ++ KK EE+E++ E +E EE EE E EE+++ EE ++ EEE
Sbjct: 1672 EDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEE 1727
Score = 35.9 bits (82), Expect = 0.015
Identities = 24/71 (33%), Positives = 39/71 (54%)
Query: 141 KMLEPLLVLTLRKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEE 200
K +E L +KKK ++ KK EEE + + EE + EE+ EE EE+E++ E
Sbjct: 1633 KKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAE 1692
Query: 201 EEEEEEEEEEE 211
++E EE ++
Sbjct: 1693 ALKKEAEEAKK 1703
Score = 35.1 bits (80), Expect = 0.022
Identities = 22/59 (37%), Positives = 40/59 (67%)
Query: 153 KKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
++ KK ++ KK+E EE+++ EE + EEE EE E EE++++ EE +++EEE++
Sbjct: 1699 EEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKK 1757
Score = 34.3 bits (78), Expect = 0.045
Identities = 22/59 (37%), Positives = 38/59 (64%)
Query: 153 KKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
+ KK ++ KKKE EE+++ EE EEE EE EE++++ EE +++EEE+++
Sbjct: 1700 EAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKK 1758
Score = 34.3 bits (78), Expect = 0.048
Identities = 18/57 (31%), Positives = 33/57 (57%)
Query: 153 KKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEE 209
+ K K ++ K+ EE++++ EE + EE+ E E EE ++ EE +++E EE
Sbjct: 1658 ENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEE 1714
Score = 33.6 bits (76), Expect = 0.082
Identities = 23/74 (31%), Positives = 39/74 (52%)
Query: 138 KLPKMLEPLLVLTLRKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEE 197
+L K E + + KK ++ KKK EE ++ EE+E E EE EE +++
Sbjct: 1651 ELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKK 1710
Query: 198 EEEEEEEEEEEEEE 211
E EE+++ EE ++
Sbjct: 1711 EAEEKKKAEELKKA 1724
Score = 33.6 bits (76), Expect = 0.088
Identities = 22/58 (37%), Positives = 34/58 (58%)
Query: 154 KKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
+KK + KKE EE ++ EE +E EE EE EEE + + EE ++E EE+++
Sbjct: 1687 EKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKK 1744
Score = 32.4 bits (73), Expect = 0.20
Identities = 21/69 (30%), Positives = 38/69 (55%)
Query: 141 KMLEPLLVLTLRKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEE 200
+E ++ L +KK K ++ KK EE + + EE EEE+ + + EE+++ EE
Sbjct: 1592 ARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEE 1651
Query: 201 EEEEEEEEE 209
++ EEE +
Sbjct: 1652 LKKAEEENK 1660
Score = 31.3 bits (70), Expect = 0.40
Identities = 20/58 (34%), Positives = 35/58 (60%)
Query: 153 KKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEE 210
++KK K ++ K+ EE + + EE + EEE E+ E EE+++ EE ++ EEE +
Sbjct: 1603 EEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENK 1660
Score = 31.3 bits (70), Expect = 0.48
Identities = 20/59 (33%), Positives = 35/59 (59%)
Query: 153 KKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
+ K K ++ KK EEE+++ E+ +E EE EE EEE + + EE ++ EE+++
Sbjct: 1617 EAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKK 1675
Score = 30.9 bits (69), Expect = 0.52
Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Query: 154 KKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEE----EEEEEEEE 209
KK ++ +KK E ++E EE EE + EE+ EE ++ EEE EE ++E E
Sbjct: 1681 KKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAE 1740
Query: 210 EE 211
E+
Sbjct: 1741 ED 1742
Score = 30.5 bits (68), Expect = 0.81
Identities = 22/59 (37%), Positives = 37/59 (62%)
Query: 153 KKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
++KKK ++ KK EEE + + EE +E EE EE +EEE+++ ++EEE++ E
Sbjct: 1713 EEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAE 1771
Score = 29.7 bits (66), Expect = 1.3
Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 4/87 (4%)
Query: 129 KNLKGERNVKLPKMLEPLLVLTLRKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEE 188
K + R ++ K+ E + + KK ++ K K EE ++ EEE+ E+ + EE+
Sbjct: 1587 KKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEK 1646
Query: 189 GGGEEEEEEEEEE----EEEEEEEEEE 211
EE ++ EEE EE ++ EE+
Sbjct: 1647 KKAEELKKAEEENKIKAAEEAKKAEED 1673
Score = 29.3 bits (65), Expect = 1.7
Identities = 10/61 (16%), Positives = 33/61 (54%)
Query: 151 LRKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEE 210
++K + +K++EE +++ + ++ EE +E EE++++ +E ++ ++
Sbjct: 1359 AEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKK 1418
Query: 211 E 211
+
Sbjct: 1419 K 1419
Score = 29.0 bits (64), Expect = 2.1
Identities = 15/59 (25%), Positives = 33/59 (55%)
Query: 153 KKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
++ KK + KK+ EE +++ +E + E +E EE ++ +E ++ EE ++ +E
Sbjct: 1480 EEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADE 1538
Score = 29.0 bits (64), Expect = 2.3
Identities = 18/62 (29%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
Query: 153 KKKKKKKKKKKEEEEEEEEEEEGGEE---EEEGGGGEEEGGGEEEEEEEEEEEEEEEEEE 209
KKK ++ KKK +E ++ E ++ +E EE +E EE ++ +E ++ EE+++
Sbjct: 1489 KKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKA 1548
Query: 210 EE 211
+E
Sbjct: 1549 DE 1550
Score = 28.2 bits (62), Expect = 3.8
Identities = 11/56 (19%), Positives = 30/56 (53%)
Query: 152 RKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEE 207
+ + ++K E E+++EE + + EE+ +E +++ EE++++ +E
Sbjct: 1354 AAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADE 1409
Score = 28.2 bits (62), Expect = 3.8
Identities = 13/59 (22%), Positives = 31/59 (52%)
Query: 152 RKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEE 210
K + + + E EE+ E E +EE + + EE+++ +E +++ EE++++
Sbjct: 1348 AKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKK 1406
Score = 28.2 bits (62), Expect = 4.3
Identities = 12/59 (20%), Positives = 30/59 (50%)
Query: 153 KKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
K + + + E EE+ E ++EE + EE+++ +E +++ EE++++
Sbjct: 1348 AKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKK 1406
Score = 28.2 bits (62), Expect = 4.5
Identities = 21/57 (36%), Positives = 33/57 (57%)
Query: 154 KKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEE 210
K K ++ KKE EE++++ EE ++EEE EE++ EE +E+E EEE
Sbjct: 1728 NKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEE 1784
Score = 28.2 bits (62), Expect = 4.7
Identities = 16/61 (26%), Positives = 35/61 (57%)
Query: 151 LRKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEE 210
+K + KKK + ++ EE ++ + ++ EE +E EE+++ +E ++ EE ++ E
Sbjct: 1502 AKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAE 1561
Query: 211 E 211
E
Sbjct: 1562 E 1562
Score = 27.4 bits (60), Expect = 7.0
Identities = 16/59 (27%), Positives = 33/59 (55%)
Query: 153 KKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
+ KK + KKK EE ++ +E + EE + E + E +++ +E ++ EE ++ +E
Sbjct: 1468 EAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADE 1526
Score = 27.0 bits (59), Expect = 9.6
Identities = 20/61 (32%), Positives = 37/61 (60%)
Query: 151 LRKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEE 210
+K+ ++ KKK +E +++EEE+++ ++E EE E+E EEE +EE+E+
Sbjct: 1735 AKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRM 1794
Query: 211 E 211
E
Sbjct: 1795 E 1795
>gnl|CDD|145949 pfam03066, Nucleoplasmin, Nucleoplasmin. Nucleoplasmins are also
known as chromatin decondensation proteins. They bind to
core histones and transfer DNA to them in a reaction
that requires ATP. This is thought to play a role in the
assembly of regular nucleosomal arrays.
Length = 146
Score = 35.0 bits (81), Expect = 0.008
Identities = 13/29 (44%), Positives = 21/29 (72%)
Query: 183 GGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
E + E+EEEE++EE+++E+E EEE
Sbjct: 110 EEDESDDDEEDEEEEDDEEDDDEDESEEE 138
Score = 34.2 bits (79), Expect = 0.020
Identities = 12/27 (44%), Positives = 22/27 (81%)
Query: 185 GEEEGGGEEEEEEEEEEEEEEEEEEEE 211
EE +++EE+EEEE++EE+++E+E
Sbjct: 108 ASEEDESDDDEEDEEEEDDEEDDDEDE 134
Score = 32.7 bits (75), Expect = 0.055
Identities = 17/36 (47%), Positives = 25/36 (69%), Gaps = 4/36 (11%)
Query: 176 GEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
EE+E EE+ EEEE++EE+++E+E EEEE
Sbjct: 108 ASEEDESDDDEED----EEEEDDEEDDDEDESEEEE 139
Score = 30.0 bits (68), Expect = 0.49
Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 17/47 (36%)
Query: 163 KEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEE 209
+E+E +++EE+E EEE++EE+++E+E EEEE
Sbjct: 110 EEDESDDDEEDE-----------------EEEDDEEDDDEDESEEEE 139
Score = 29.6 bits (67), Expect = 0.59
Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 10/41 (24%)
Query: 164 EEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEE 204
EE+E +++EE EEE++ EE+++E+E EEEE
Sbjct: 109 SEEDESDDDEEDEEEEDD----------EEDDDEDESEEEE 139
Score = 29.2 bits (66), Expect = 0.79
Identities = 12/27 (44%), Positives = 21/27 (77%)
Query: 185 GEEEGGGEEEEEEEEEEEEEEEEEEEE 211
G+ EE+E +++EE+EEEE++EE+
Sbjct: 103 GQHLVASEEDESDDDEEDEEEEDDEED 129
Score = 29.2 bits (66), Expect = 1.0
Identities = 11/28 (39%), Positives = 20/28 (71%)
Query: 184 GGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
G E+E +++EE+EEEE++EE++
Sbjct: 103 GQHLVASEEDESDDDEEDEEEEDDEEDD 130
>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional.
Length = 509
Score = 36.1 bits (84), Expect = 0.008
Identities = 16/95 (16%), Positives = 46/95 (48%)
Query: 117 EPTAAALAYGLDKNLKGERNVKLPKMLEPLLVLTLRKKKKKKKKKKKEEEEEEEEEEEGG 176
P L LD + K E+ L K + V + + +++++ ++++
Sbjct: 90 APAKKKLKDELDSSKKAEKKNALDKDDDLNYVKDIDVLNQADDDDDDDDDDDLDDDDIDD 149
Query: 177 EEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
++++E +++ ++E+EE++E +E E+ ++
Sbjct: 150 DDDDEDDDEDDDDDDVDDEDEEKKEAKELEKLSDD 184
Score = 29.6 bits (67), Expect = 1.4
Identities = 14/142 (9%), Positives = 45/142 (31%), Gaps = 3/142 (2%)
Query: 70 KETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDK 129
+ ++ I A+ A K + + + D
Sbjct: 58 FLSGMVKDTDDATESDIPKKKTKTAAKAAAAKAPAKKKLKDELDSSKKAEKKNALDKDDD 117
Query: 130 NLKGERNVKLPKMLEPLLVLTLRKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEG 189
+ L + + ++E+++E++++ ++E+ E +
Sbjct: 118 LNYVKDIDVLNQADDDDDDDDDDDLDDDDIDDDDDDEDDDEDDDDDDVDDEDEEKKEAK- 176
Query: 190 GGEEEEEEEEEEEEEEEEEEEE 211
E E+ ++++ +E++ E
Sbjct: 177 --ELEKLSDDDDFVWDEDDSEA 196
>gnl|CDD|237629 PRK14160, PRK14160, heat shock protein GrpE; Provisional.
Length = 211
Score = 35.5 bits (82), Expect = 0.009
Identities = 20/57 (35%), Positives = 31/57 (54%)
Query: 155 KKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
+K+ K K E EE+ +E +EE++G + E E+EE E+ EE E + EE
Sbjct: 2 EKECKDAKHENMEEDCCKENENKEEDKGKEEDLEFEEIEKEEIIEDSEESNEVKIEE 58
Score = 35.1 bits (81), Expect = 0.013
Identities = 18/57 (31%), Positives = 32/57 (56%)
Query: 152 RKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEE 208
+ K + ++ +E E +EE++G EE+ E E+E E+ EE E + EE ++E
Sbjct: 6 KDAKHENMEEDCCKENENKEEDKGKEEDLEFEEIEKEEIIEDSEESNEVKIEELKDE 62
Score = 33.6 bits (77), Expect = 0.040
Identities = 19/58 (32%), Positives = 29/58 (50%)
Query: 154 KKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
+K+ K K + EE+ +E E EE++ E E+EE E+ EE E + EE
Sbjct: 2 EKECKDAKHENMEEDCCKENENKEEDKGKEEDLEFEEIEKEEIIEDSEESNEVKIEEL 59
Score = 33.2 bits (76), Expect = 0.056
Identities = 18/60 (30%), Positives = 30/60 (50%)
Query: 152 RKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
+K+ K K + EE+ +E E E++ + E E +EE E+ EE E + EE +
Sbjct: 1 MEKECKDAKHENMEEDCCKENENKEEDKGKEEDLEFEEIEKEEIIEDSEESNEVKIEELK 60
Score = 28.6 bits (64), Expect = 2.2
Identities = 17/57 (29%), Positives = 32/57 (56%)
Query: 154 KKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEE 210
+ K+ + KEE++ +EE+ E E E+E + E E + EE ++E + +EE +
Sbjct: 15 EDCCKENENKEEDKGKEEDLEFEEIEKEEIIEDSEESNEVKIEELKDENNKLKEENK 71
Score = 27.8 bits (62), Expect = 3.3
Identities = 16/66 (24%), Positives = 33/66 (50%)
Query: 144 EPLLVLTLRKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEE 203
+ + + K+ + K+E++ +EE+ E E+EE EE + EE ++E +
Sbjct: 6 KDAKHENMEEDCCKENENKEEDKGKEEDLEFEEIEKEEIIEDSEESNEVKIEELKDENNK 65
Query: 204 EEEEEE 209
+EE +
Sbjct: 66 LKEENK 71
Score = 26.6 bits (59), Expect = 9.4
Identities = 19/57 (33%), Positives = 32/57 (56%)
Query: 154 KKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEE 210
K++ K K+++ E EE E+EE E+ EE + E +E + +EE ++ E E E
Sbjct: 23 NKEEDKGKEEDLEFEEIEKEEIIEDSEESNEVKIEELKDENNKLKEENKKLENELEA 79
>gnl|CDD|227157 COG4820, EutJ, Ethanolamine utilization protein, possible
chaperonin [Amino acid transport and metabolism].
Length = 277
Score = 36.0 bits (83), Expect = 0.009
Identities = 19/65 (29%), Positives = 33/65 (50%)
Query: 64 QLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAAL 123
+++ ++K+T E LG A +P + + + AGL V+ +++EPTAAA
Sbjct: 76 EIVRRLKDTLEKQLGIRFTHAATAIPPGTEQGDPRISINVIESAGLEVLHVLDEPTAAAD 135
Query: 124 AYGLD 128
LD
Sbjct: 136 VLQLD 140
>gnl|CDD|216269 pfam01056, Myc_N, Myc amino-terminal region. The myc family
belongs to the basic helix-loop-helix leucine zipper
class of transcription factors, see pfam00010. Myc forms
a heterodimer with Max, and this complex regulates cell
growth through direct activation of genes involved in
cell replication. Mutations in the C-terminal 20
residues of this domain cause unique changes in the
induction of apoptosis, transformation, and G2 arrest.
Length = 329
Score = 36.1 bits (83), Expect = 0.010
Identities = 16/21 (76%), Positives = 18/21 (85%)
Query: 191 GEEEEEEEEEEEEEEEEEEEE 211
G + E EE+EEEEEEEEEEEE
Sbjct: 223 GSDSESEEDEEEEEEEEEEEE 243
Score = 34.1 bits (78), Expect = 0.038
Identities = 16/21 (76%), Positives = 18/21 (85%)
Query: 190 GGEEEEEEEEEEEEEEEEEEE 210
G + E EE+EEEEEEEEEEEE
Sbjct: 223 GSDSESEEDEEEEEEEEEEEE 243
Score = 32.6 bits (74), Expect = 0.13
Identities = 16/21 (76%), Positives = 17/21 (80%)
Query: 189 GGGEEEEEEEEEEEEEEEEEE 209
G E EE+EEEEEEEEEEEE
Sbjct: 223 GSDSESEEDEEEEEEEEEEEE 243
Score = 29.9 bits (67), Expect = 0.79
Identities = 14/21 (66%), Positives = 16/21 (76%)
Query: 185 GEEEGGGEEEEEEEEEEEEEE 205
G + E+EEEEEEEEEEEE
Sbjct: 223 GSDSESEEDEEEEEEEEEEEE 243
Score = 29.1 bits (65), Expect = 1.6
Identities = 14/21 (66%), Positives = 16/21 (76%)
Query: 184 GGEEEGGGEEEEEEEEEEEEE 204
G + E +EEEEEEEEEEEE
Sbjct: 223 GSDSESEEDEEEEEEEEEEEE 243
Score = 27.6 bits (61), Expect = 5.8
Identities = 13/17 (76%), Positives = 14/17 (82%)
Query: 164 EEEEEEEEEEEGGEEEE 180
E EE+EEEEEE EEEE
Sbjct: 227 ESEEDEEEEEEEEEEEE 243
Score = 26.8 bits (59), Expect = 8.5
Identities = 13/17 (76%), Positives = 14/17 (82%)
Query: 165 EEEEEEEEEEGGEEEEE 181
E EE+EEEEE EEEEE
Sbjct: 227 ESEEDEEEEEEEEEEEE 243
>gnl|CDD|219069 pfam06512, Na_trans_assoc, Sodium ion transport-associated.
Members of this family contain a region found
exclusively in eukaryotic sodium channels or their
subunits, many of which are voltage-gated. Members very
often also contain between one and four copies of
pfam00520 and, less often, one copy of pfam00612.
Length = 230
Score = 35.4 bits (82), Expect = 0.010
Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 11/58 (18%)
Query: 164 EEEEEEEEEEEGGEEEEEGGGGE-----------EEGGGEEEEEEEEEEEEEEEEEEE 210
+E+ E G +EE + G E EG + E EEEEEE EEEEE
Sbjct: 118 NDEDTSSESSYGFKEESKKGSAETLKLEEKDSSSSEGSTVDLEPPEEEEEEIAEEEEE 175
Score = 32.3 bits (74), Expect = 0.11
Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 163 KEEEEEEEEEEEGGEEE----EEGGGGEEEGGGEEEEEEEEEEEEEEEEEE 209
KEE ++ E EE+ EG + E EEEEE EEEEE +E E+
Sbjct: 131 KEESKKGSAETLKLEEKDSSSSEGSTVDLEPPEEEEEEIAEEEEEVKEPED 181
Score = 27.7 bits (62), Expect = 3.6
Identities = 17/54 (31%), Positives = 22/54 (40%), Gaps = 6/54 (11%)
Query: 164 EEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEE------EEEEEEEEEEE 211
+E+ E G +EE G E EE++ E E EEEEEE
Sbjct: 117 LNDEDTSSESSYGFKEESKKGSAETLKLEEKDSSSSEGSTVDLEPPEEEEEEIA 170
>gnl|CDD|218223 pfam04712, Radial_spoke, Radial spokehead-like protein. This
family includes the radial spoke head proteins RSP4 and
RSP6 from Chlamydomonas reinhardtii, and several
eukaryotic homologues, including mammalian RSHL1, the
protein product of a familial ciliary dyskinesia
candidate gene.
Length = 481
Score = 35.8 bits (83), Expect = 0.011
Identities = 30/83 (36%), Positives = 34/83 (40%), Gaps = 35/83 (42%)
Query: 164 EEEEEEEEEEEGGE----------EEEEGGG-------------------------GEEE 188
EEEEEEEEEEE E E E E++
Sbjct: 288 EEEEEEEEEEEPAERDELEENPDFEGLEVRELADSLDNWVHHVQHILPQGRCTWVNPEQK 347
Query: 189 GGGEEEEEEEEEEEEEEEEEEEE 211
EE+E+EEEEEEEEE EE E
Sbjct: 348 DEEEEQEDEEEEEEEEEPEEPEP 370
Score = 33.1 bits (76), Expect = 0.089
Identities = 22/37 (59%), Positives = 24/37 (64%)
Query: 164 EEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEE 200
E EEEEEEEE GE +EE G EEE EE +EEE
Sbjct: 168 REGEEEEEEEEVGEADEEDEGEEEEEEEPEEVPKEEE 204
Score = 32.7 bits (75), Expect = 0.11
Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 11/44 (25%)
Query: 166 EEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEE 209
E+++EEE E+EEE EEEEEE EE E EE
Sbjct: 343 NPEQKDEEEEQEDEEE-----------EEEEEEPEEPEPEEGPP 375
Score = 32.0 bits (73), Expect = 0.19
Identities = 25/41 (60%), Positives = 27/41 (65%)
Query: 167 EEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEE 207
E E E E EEEEE G +EE GEEEEEEE EE +EEE
Sbjct: 164 EVELREGEEEEEEEEVGEADEEDEGEEEEEEEPEEVPKEEE 204
Score = 31.6 bits (72), Expect = 0.29
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 152 RKKKKKKKKKKKEEEEEEEEEEEGGEEEEE 181
R ++K +EEE+E+EEEEE EE EE
Sbjct: 338 RCTWVNPEQKDEEEEQEDEEEEEEEEEPEE 367
Score = 30.8 bits (70), Expect = 0.52
Identities = 20/37 (54%), Positives = 22/37 (59%)
Query: 165 EEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEE 201
E EEEEEEE E +E GEEE E EE +EEE
Sbjct: 168 REGEEEEEEEEVGEADEEDEGEEEEEEEPEEVPKEEE 204
Score = 30.4 bits (69), Expect = 0.72
Identities = 24/41 (58%), Positives = 26/41 (63%)
Query: 166 EEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEE 206
E E E EE EEEE G EE+ G EEEEEE EE +EEE
Sbjct: 164 EVELREGEEEEEEEEVGEADEEDEGEEEEEEEPEEVPKEEE 204
Score = 30.0 bits (68), Expect = 1.0
Identities = 13/35 (37%), Positives = 16/35 (45%)
Query: 177 EEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
EEEE EEE +E EE + E E E +
Sbjct: 287 LEEEEEEEEEEEPAERDELEENPDFEGLEVRELAD 321
Score = 27.3 bits (61), Expect = 6.9
Identities = 24/39 (61%), Positives = 26/39 (66%), Gaps = 4/39 (10%)
Query: 170 EEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEE 208
E E GEEEEE EEE G +EE+E EEEEEEE EE
Sbjct: 164 EVELREGEEEEE----EEEVGEADEEDEGEEEEEEEPEE 198
>gnl|CDD|212668 cd10225, MreB_like, MreB and similar proteins. MreB is a bacterial
protein which assembles into filaments resembling those
of eukaryotic F-actin. It is involved in determining the
shape of rod-like bacterial cells, by assembling into
large fibrous spirals beneath the cell membrane. MreB
has also been implicated in chromosome segregation;
specifically MreB is thought to bind to and segregate
the replication origin of bacterial chromosomes.
Length = 320
Score = 35.5 bits (83), Expect = 0.013
Identities = 18/44 (40%), Positives = 26/44 (59%)
Query: 85 VITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLD 128
VI VP+ + +R+A DA AG + ++ EP AAA+ GLD
Sbjct: 94 VICVPSGITEVERRAVIDAALHAGAREVYLIEEPLAAAIGAGLD 137
>gnl|CDD|235033 PRK02363, PRK02363, DNA-directed RNA polymerase subunit delta;
Reviewed.
Length = 129
Score = 34.2 bits (79), Expect = 0.013
Identities = 15/57 (26%), Positives = 33/57 (57%), Gaps = 10/57 (17%)
Query: 153 KKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEE 209
++K KKKKK + +++ ++ +++ +EE+ +EE++E+EE+EE
Sbjct: 83 LEEKFDKKKKKFMDGDDDIIDDDILPDDD----------FDEEDLDEEDDEDEEDEE 129
Score = 33.8 bits (78), Expect = 0.017
Identities = 16/60 (26%), Positives = 36/60 (60%), Gaps = 10/60 (16%)
Query: 148 VLTLRKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEE 207
++ L +K KKKKK + +++ +++ +++ + EE+ +EE++E+EE+EE
Sbjct: 80 IIPLEEKFDKKKKKFMDGDDDIIDDDILPDDDFD----------EEDLDEEDDEDEEDEE 129
Score = 28.8 bits (65), Expect = 0.97
Identities = 16/62 (25%), Positives = 33/62 (53%), Gaps = 10/62 (16%)
Query: 144 EPLLVLTLRKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEE 203
E ++ L + KKKKK +++ +++ + +EE + +EE++E+EE+
Sbjct: 78 EEIIPLEEKFDKKKKKFMDGDDDIIDDDILPDDDFDEE----------DLDEEDDEDEED 127
Query: 204 EE 205
EE
Sbjct: 128 EE 129
Score = 28.1 bits (63), Expect = 1.9
Identities = 13/59 (22%), Positives = 31/59 (52%), Gaps = 16/59 (27%)
Query: 153 KKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
++K KKKKK + +++ +++ +++ +EE+ +EE++E+EE
Sbjct: 84 EEKFDKKKKKFMDGDDDIIDDDI----------------LPDDDFDEEDLDEEDDEDEE 126
>gnl|CDD|217861 pfam04050, Upf2, Up-frameshift suppressor 2. Transcripts
harbouring premature signals for translation termination
are recognised and rapidly degraded by eukaryotic cells
through a pathway known as nonsense-mediated mRNA decay.
In Saccharomyces cerevisiae, three trans-acting factors
(Upf1 to Upf3) are required for nonsense-mediated mRNA
decay.
Length = 171
Score = 34.7 bits (80), Expect = 0.014
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 165 EEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
EE+EE EE+ +E + + ++EE + EEE+ +EEE
Sbjct: 11 EEDEELPEEDEDDESSDEEEVDLPDDEQDEESDSEEEQIFVTRQEEE 57
Score = 34.3 bits (79), Expect = 0.021
Identities = 16/48 (33%), Positives = 26/48 (54%)
Query: 164 EEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
E EE+E++E EEE + E++ + EEE+ +EEE + E
Sbjct: 15 ELPEEDEDDESSDEEEVDLPDDEQDEESDSEEEQIFVTRQEEEVDPEA 62
Score = 32.7 bits (75), Expect = 0.068
Identities = 12/48 (25%), Positives = 24/48 (50%)
Query: 164 EEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
E E ++ EE+ EE+ + + ++E++EE + EEE+
Sbjct: 3 SESESDDGEEDEELPEEDEDDESSDEEEVDLPDDEQDEESDSEEEQIF 50
Score = 32.3 bits (74), Expect = 0.085
Identities = 16/47 (34%), Positives = 25/47 (53%)
Query: 164 EEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEE 210
+E +EEE + +E++E EEE +EEE + E E E + E
Sbjct: 23 DESSDEEEVDLPDDEQDEESDSEEEQIFVTRQEEEVDPEAEAEFDRE 69
Score = 32.3 bits (74), Expect = 0.089
Identities = 14/49 (28%), Positives = 26/49 (53%)
Query: 163 KEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
+++E +EEE + ++E++ EE +EEE + E E E + E
Sbjct: 21 EDDESSDEEEVDLPDDEQDEESDSEEEQIFVTRQEEEVDPEAEAEFDRE 69
Score = 29.3 bits (66), Expect = 0.87
Identities = 17/49 (34%), Positives = 25/49 (51%)
Query: 163 KEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
E +EEE + E++EE EE+ +EEE + E E E + E E
Sbjct: 23 DESSDEEEVDLPDDEQDEESDSEEEQIFVTRQEEEVDPEAEAEFDREFE 71
Score = 27.3 bits (61), Expect = 4.0
Identities = 15/45 (33%), Positives = 26/45 (57%)
Query: 167 EEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
E E + GEE+EE +E+ +EEE + ++E++EE + E
Sbjct: 1 SGSESESDDGEEDEELPEEDEDDESSDEEEVDLPDDEQDEESDSE 45
>gnl|CDD|213718 TIGR02529, EutJ, ethanolamine utilization protein EutJ family
protein.
Length = 239
Score = 35.1 bits (81), Expect = 0.015
Identities = 16/61 (26%), Positives = 30/61 (49%)
Query: 68 KMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGL 127
++K+T E LG + A +P + + + AG+ V+ +++EPTAAA +
Sbjct: 48 RLKDTLEQKLGIELTHAATAIPPGTIEGDPKVIVNVIESAGIEVLHVLDEPTAAAAVLQI 107
Query: 128 D 128
Sbjct: 108 K 108
>gnl|CDD|220383 pfam09756, DDRGK, DDRGK domain. This is a family of proteins of
approximately 300 residues, found in plants and
vertebrates. They contain a highly conserved DDRGK
motif.
Length = 189
Score = 34.7 bits (80), Expect = 0.016
Identities = 24/62 (38%), Positives = 40/62 (64%)
Query: 150 TLRKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEE 209
++ K ++K+ ++++ E EEEE E ++ EE GE + E EEE E+++EEEE +E
Sbjct: 5 AKKRAKLEEKQARRQQREAEEEEREERKKLEEKREGERKEEEELEEEREKKKEEEERKER 64
Query: 210 EE 211
EE
Sbjct: 65 EE 66
Score = 34.3 bits (79), Expect = 0.020
Identities = 25/61 (40%), Positives = 39/61 (63%)
Query: 151 LRKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEE 210
K ++K+ ++++ E EEEE EE EE+ G +EE EEE E+++EEEE +E EE+
Sbjct: 8 RAKLEEKQARRQQREAEEEEREERKKLEEKREGERKEEEELEEEREKKKEEEERKEREEQ 67
Query: 211 E 211
Sbjct: 68 A 68
Score = 32.4 bits (74), Expect = 0.10
Identities = 25/60 (41%), Positives = 38/60 (63%)
Query: 152 RKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
RKK ++K++ +++EEEE EEE E +EEEE EE+ E+EE E+ + EEE +
Sbjct: 31 RKKLEEKREGERKEEEELEEEREKKKEEEERKEREEQARKEQEEYEKLKSSFVVEEEGTD 90
Score = 30.8 bits (70), Expect = 0.33
Identities = 26/59 (44%), Positives = 35/59 (59%)
Query: 153 KKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
KK KK+ K EE++ ++ E EEE E EE E +EEEE EEE E+++EEE
Sbjct: 1 KKIGAKKRAKLEEKQARRQQREAEEEEREERKKLEEKREGERKEEEELEEEREKKKEEE 59
Score = 30.1 bits (68), Expect = 0.52
Identities = 26/65 (40%), Positives = 41/65 (63%), Gaps = 6/65 (9%)
Query: 152 RKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGE------EEEEEEEEEEEEE 205
+ ++K+ +++++E EEEE EE + EE+ EG EEE E EEEE +E EE+
Sbjct: 10 KLEEKQARRQQREAEEEEREERKKLEEKREGERKEEEELEEEREKKKEEEERKEREEQAR 69
Query: 206 EEEEE 210
+E+EE
Sbjct: 70 KEQEE 74
Score = 29.3 bits (66), Expect = 1.1
Identities = 22/59 (37%), Positives = 38/59 (64%), Gaps = 4/59 (6%)
Query: 151 LRKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEE 209
R+++KK ++K++ E +EEEE EE E+++E EEE EE+ +E+EE E+ +
Sbjct: 27 EREERKKLEEKREGERKEEEELEEEREKKKE----EEERKEREEQARKEQEEYEKLKSS 81
Score = 28.1 bits (63), Expect = 2.9
Identities = 19/68 (27%), Positives = 38/68 (55%)
Query: 144 EPLLVLTLRKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEE 203
E L +++ ++K++++ EEE E+++EEE +E EE E+E + + EEE
Sbjct: 29 EERKKLEEKREGERKEEEELEEEREKKKEEEERKEREEQARKEQEEYEKLKSSFVVEEEG 88
Query: 204 EEEEEEEE 211
++ +E
Sbjct: 89 TDKLSADE 96
>gnl|CDD|222977 PHA03089, PHA03089, late transcription factor VLTF-4; Provisional.
Length = 191
Score = 34.8 bits (80), Expect = 0.016
Identities = 18/58 (31%), Positives = 28/58 (48%)
Query: 153 KKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEE 210
+KKK KK KK+++E+EE E EE + EE + E + + E E+
Sbjct: 59 RKKKTTKKTKKKKKEKEEVPELAAEELSDSEENEENDKKVDYELPKVQNTAAEVNHED 116
Score = 34.0 bits (78), Expect = 0.026
Identities = 19/60 (31%), Positives = 28/60 (46%)
Query: 150 TLRKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEE 209
T RKKK KK KKK++E+EE E E + E + + E + + E E+
Sbjct: 57 TPRKKKTTKKTKKKKKEKEEVPELAAEELSDSEENEENDKKVDYELPKVQNTAAEVNHED 116
>gnl|CDD|235302 PRK04456, PRK04456, acetyl-CoA decarbonylase/synthase complex
subunit beta; Reviewed.
Length = 463
Score = 35.4 bits (82), Expect = 0.017
Identities = 17/24 (70%), Positives = 17/24 (70%)
Query: 188 EGGGEEEEEEEEEEEEEEEEEEEE 211
E EEEEEEEEEEEEEEE E
Sbjct: 400 ERWAAEEEEEEEEEEEEEEEPVAE 423
Score = 30.4 bits (69), Expect = 0.65
Identities = 15/20 (75%), Positives = 15/20 (75%)
Query: 192 EEEEEEEEEEEEEEEEEEEE 211
EEEEEEEEEEEEEE E
Sbjct: 406 EEEEEEEEEEEEEEPVAEVM 425
Score = 28.5 bits (64), Expect = 2.4
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 151 LRKKKKKKKKKKKEEEEEEEEEEEGGEEEEEG 182
L++K+ ++ EEEEEEEEEE EEE
Sbjct: 391 LKEKEHPVVERWAAEEEEEEEEEEEEEEEPVA 422
Score = 28.1 bits (63), Expect = 4.0
Identities = 13/29 (44%), Positives = 13/29 (44%)
Query: 162 KKEEEEEEEEEEEGGEEEEEGGGGEEEGG 190
EEEEEEEEEEE EE
Sbjct: 403 AAEEEEEEEEEEEEEEEPVAEVMMMPAPE 431
>gnl|CDD|219563 pfam07767, Nop53, Nop53 (60S ribosomal biogenesis). This nucleolar
family of proteins are involved in 60S ribosomal
biogenesis. They are specifically involved in the
processing beyond the 27S stage of 25S rRNA maturation.
This family contains sequences that bear similarity to
the glioma tumour suppressor candidate region gene 2
protein (p60). This protein has been found to interact
with herpes simplex type 1 regulatory proteins.
Length = 387
Score = 35.1 bits (81), Expect = 0.018
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 7/64 (10%)
Query: 155 KKKKKKKKKEEEEEEEEEE-------EGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEE 207
+K+ K +KK +E E EE+ E +E G EE + EEE ++E E E
Sbjct: 204 EKEVKAEKKRQELERVEEKKLEKMAPEASRLDEMSEGLLEESDDDGEEESDDESAWEGFE 263
Query: 208 EEEE 211
E E
Sbjct: 264 SEYE 267
Score = 33.5 bits (77), Expect = 0.061
Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 7/71 (9%)
Query: 147 LVLTLRKKKKKKKKKKKEEEEEEEE-------EEEGGEEEEEGGGGEEEGGGEEEEEEEE 199
L+ +K+ K +KK++E E EE+ E +E EG E + GEEE ++E
Sbjct: 198 LLQEEYEKEVKAEKKRQELERVEEKKLEKMAPEASRLDEMSEGLLEESDDDGEEESDDES 257
Query: 200 EEEEEEEEEEE 210
E E E E
Sbjct: 258 AWEGFESEYEP 268
Score = 28.5 bits (64), Expect = 2.6
Identities = 17/61 (27%), Positives = 25/61 (40%)
Query: 151 LRKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEE 210
L + ++KK +K E +E EG EE + G EE E E E E +
Sbjct: 216 LERVEEKKLEKMAPEASRLDEMSEGLLEESDDDGEEESDDESAWEGFESEYEPINKPVRP 275
Query: 211 E 211
+
Sbjct: 276 K 276
Score = 27.4 bits (61), Expect = 6.1
Identities = 14/60 (23%), Positives = 32/60 (53%)
Query: 152 RKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
RK K ++ K+K+ +E E E +EE +++ + +E ++E+ ++E+ +E
Sbjct: 277 RKTKAQRNKEKRRKELEREAKEEKQLKKKLAQLARLKEIAKEVAQKEKARARKKEQRKER 336
>gnl|CDD|235396 PRK05299, rpsB, 30S ribosomal protein S2; Provisional.
Length = 258
Score = 34.8 bits (81), Expect = 0.018
Identities = 21/31 (67%), Positives = 21/31 (67%)
Query: 181 EGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
EG G EEEEEE EEEEEEEEEEE E
Sbjct: 223 EGRQGRLAEAAEEEEEEAEEEEEEEEEEEAE 253
Score = 32.8 bits (76), Expect = 0.074
Identities = 19/35 (54%), Positives = 20/35 (57%)
Query: 176 GEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEE 210
G + EEE EEEEEEEEEEE EE E E
Sbjct: 224 GRQGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258
Score = 32.8 bits (76), Expect = 0.088
Identities = 20/36 (55%), Positives = 21/36 (58%)
Query: 174 EGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEE 209
EG + EEE EEEEEEEEEEE EE E E
Sbjct: 223 EGRQGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258
Score = 30.1 bits (69), Expect = 0.68
Identities = 20/44 (45%), Positives = 22/44 (50%), Gaps = 10/44 (22%)
Query: 163 KEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEE 206
++ E EEE E EEE EEEEEEEE EE E E
Sbjct: 225 RQGRLAEAAEEEEEEAEEE----------EEEEEEEEAEEAEAE 258
Score = 28.6 bits (65), Expect = 2.3
Identities = 20/44 (45%), Positives = 22/44 (50%), Gaps = 10/44 (22%)
Query: 162 KKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEE 205
++ E EEEE EEEE EEEEEEE EE E E
Sbjct: 225 RQGRLAEAAEEEEEEAEEEE----------EEEEEEEAEEAEAE 258
Score = 27.8 bits (63), Expect = 3.3
Identities = 22/51 (43%), Positives = 24/51 (47%), Gaps = 17/51 (33%)
Query: 161 KKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
++ E EEEEE E EEEEEEEEEEE EE E E
Sbjct: 225 RQGRLAEAAEEEEE-----------------EAEEEEEEEEEEEAEEAEAE 258
>gnl|CDD|224530 COG1614, CdhC, CO dehydrogenase/acetyl-CoA synthase beta subunit
[Energy production and conversion].
Length = 470
Score = 35.2 bits (81), Expect = 0.019
Identities = 30/78 (38%), Positives = 37/78 (47%), Gaps = 4/78 (5%)
Query: 134 ERNVKLPKMLEPLLVLTLRKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEE 193
ER V LPK L+ ++ + K EE+ +E E +E G E EE
Sbjct: 349 ERVVWLPKELKE----RVKDAIPEDLYDKIATEEDATTIDELREFLKEKGHPVVERWAEE 404
Query: 194 EEEEEEEEEEEEEEEEEE 211
EEEEEEEEEEE E E
Sbjct: 405 EEEEEEEEEEEAAEAEAP 422
Score = 27.1 bits (60), Expect = 7.4
Identities = 16/36 (44%), Positives = 19/36 (52%)
Query: 154 KKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEG 189
K+K ++ EEEEEEEEE EE E EE
Sbjct: 391 KEKGHPVVERWAEEEEEEEEEEEEEAAEAEAPMEEP 426
>gnl|CDD|219838 pfam08432, DUF1742, Fungal protein of unknown function (DUF1742).
This is a family of fungal proteins of unknown function.
Length = 182
Score = 34.3 bits (79), Expect = 0.021
Identities = 13/59 (22%), Positives = 42/59 (71%)
Query: 153 KKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
KKKKK+ ++ E+ ++E EE++ + +++ +++ ++++++++++ E+++E+E E
Sbjct: 61 KKKKKELAEEIEKVKKEYEEKQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAE 119
Score = 31.2 bits (71), Expect = 0.23
Identities = 15/59 (25%), Positives = 35/59 (59%), Gaps = 10/59 (16%)
Query: 152 RKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEE 210
K KKKK KKKK+++++++++++ + E++ +E+E E++ E+ + E
Sbjct: 84 WKWKKKKSKKKKDKDKDKKDDKKDDKSEKK----------DEKEAEDKLEDLTKSYSET 132
Score = 31.2 bits (71), Expect = 0.26
Identities = 14/60 (23%), Positives = 36/60 (60%), Gaps = 10/60 (16%)
Query: 152 RKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
+ K KKKK KKK+++++++++++ ++ E+ ++E+E E++ E+ + E
Sbjct: 83 KWKWKKKKSKKKKDKDKDKKDDKKDDKSEK----------KDEKEAEDKLEDLTKSYSET 132
Score = 30.8 bits (70), Expect = 0.28
Identities = 12/58 (20%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Query: 153 KKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEE 210
+K+K K KKKK ++++++++++ +++++ ++E +E E++ E+ + E
Sbjct: 80 EKQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDE---KEAEDKLEDLTKSYSETLS 134
Score = 30.4 bits (69), Expect = 0.41
Identities = 12/59 (20%), Positives = 37/59 (62%), Gaps = 9/59 (15%)
Query: 153 KKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
K+K K KKKK +++++++++++ +++++ E+++E+E E++ E+ +
Sbjct: 81 KQKWKWKKKKSKKKKDKDKDKKDDKKDDK---------SEKKDEKEAEDKLEDLTKSYS 130
Score = 28.5 bits (64), Expect = 1.8
Identities = 10/61 (16%), Positives = 37/61 (60%)
Query: 151 LRKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEE 210
++K+ ++K+K K ++++ ++++++ +++++ + E E+E E++ E+ + E
Sbjct: 74 VKKEYEEKQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAEDKLEDLTKSYSETL 133
Query: 211 E 211
Sbjct: 134 S 134
>gnl|CDD|237622 PRK14140, PRK14140, heat shock protein GrpE; Provisional.
Length = 191
Score = 34.2 bits (79), Expect = 0.021
Identities = 21/52 (40%), Positives = 29/52 (55%)
Query: 159 KKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEE 210
K ++ EEE EE E EE E+E E EEE E +EE+ + E E + +E
Sbjct: 4 KNEQVEEEVEETEVEEAVEDEVEEETVEEESEAELLDEEQAKIAELEAKLDE 55
Score = 32.3 bits (74), Expect = 0.11
Identities = 19/54 (35%), Positives = 28/54 (51%)
Query: 158 KKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
K ++ +EE EE E EE +E EE EE +EE+ + E E + +E E
Sbjct: 4 KNEQVEEEVEETEVEEAVEDEVEEETVEEESEAELLDEEQAKIAELEAKLDELE 57
Score = 28.0 bits (63), Expect = 3.2
Identities = 20/44 (45%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Query: 168 EEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
EE+ E+ EE EE E E E+E EEE EEE E E +E
Sbjct: 1 MEEKNEQVEEEVEET---EVEEAVEDEVEEETVEEESEAELLDE 41
Score = 27.7 bits (62), Expect = 3.6
Identities = 15/55 (27%), Positives = 27/55 (49%)
Query: 153 KKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEE 207
K ++ +++ ++ E EE E+E E EE E + + E E + +E EE
Sbjct: 4 KNEQVEEEVEETEVEEAVEDEVEEETVEEESEAELLDEEQAKIAELEAKLDELEE 58
>gnl|CDD|114172 pfam05432, BSP_II, Bone sialoprotein II (BSP-II). Bone
sialoprotein (BSP) is a major structural protein of the
bone matrix that is specifically expressed by
fully-differentiated osteoblasts. The expression of bone
sialoprotein (BSP) is normally restricted to mineralised
connective tissues of bones and teeth where it has been
associated with mineral crystal formation. However, it
has been found that ectopic expression of BSP occurs in
various lesions, including oral and extraoral
carcinomas, in which it has been associated with the
formation of microcrystalline deposits and the
metastasis of cancer cells to bone.
Length = 291
Score = 34.7 bits (79), Expect = 0.021
Identities = 28/71 (39%), Positives = 33/71 (46%), Gaps = 12/71 (16%)
Query: 150 TLRKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGG------------GGEEEGGGEEEEEE 197
+K K+ + + EEEEEEEEEEE EE E G G GG+ EE
Sbjct: 125 AGKKATKEDESDEDEEEEEEEEEEEAEVEENEQGTNGTSTNSTEVDHGNGSSGGDNGEEG 184
Query: 198 EEEEEEEEEEE 208
EEE E E E
Sbjct: 185 EEESVTEAEAE 195
Score = 30.8 bits (69), Expect = 0.42
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 181 EGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
+ G ++ E+E +E+EEEEEEEEEEE E
Sbjct: 121 KAGNAGKKATKEDESDEDEEEEEEEEEEEAE 151
Score = 30.0 bits (67), Expect = 0.79
Identities = 17/28 (60%), Positives = 20/28 (71%)
Query: 184 GGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
+E+ E+EEEEEEEEEEE E EE E
Sbjct: 129 ATKEDESDEDEEEEEEEEEEEAEVEENE 156
Score = 29.3 bits (65), Expect = 1.3
Identities = 24/65 (36%), Positives = 29/65 (44%), Gaps = 10/65 (15%)
Query: 157 KKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEE----------EEEEEEEE 206
KK K+ E +E+EEEEEE EEE E E+ G E + EE EE
Sbjct: 127 KKATKEDESDEDEEEEEEEEEEEAEVEENEQGTNGTSTNSTEVDHGNGSSGGDNGEEGEE 186
Query: 207 EEEEE 211
E E
Sbjct: 187 ESVTE 191
Score = 29.3 bits (65), Expect = 1.4
Identities = 17/32 (53%), Positives = 21/32 (65%)
Query: 180 EEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
+ E+E +EEEEEEEEEEE E EE E+
Sbjct: 126 GKKATKEDESDEDEEEEEEEEEEEAEVEENEQ 157
Score = 27.4 bits (60), Expect = 5.4
Identities = 14/26 (53%), Positives = 16/26 (61%)
Query: 186 EEEGGGEEEEEEEEEEEEEEEEEEEE 211
EE G G+ EEE EEE EEE E+
Sbjct: 52 EENGDGDSSEEEGEEETSNEEENNED 77
>gnl|CDD|237284 PRK13108, PRK13108, prolipoprotein diacylglyceryl transferase;
Reviewed.
Length = 460
Score = 35.0 bits (80), Expect = 0.021
Identities = 6/49 (12%), Positives = 14/49 (28%)
Query: 163 KEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
+E+ + + + + E +E E E E+
Sbjct: 373 REQPGDLAGQAPAAHQVDAEAASAAPEEPAALASEAHDETEPEVPEKAA 421
Score = 33.0 bits (75), Expect = 0.10
Identities = 7/49 (14%), Positives = 16/49 (32%)
Query: 162 KKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEE 210
+++ + + + + E E E +E E E E+
Sbjct: 373 REQPGDLAGQAPAAHQVDAEAASAAPEEPAALASEAHDETEPEVPEKAA 421
Score = 31.1 bits (70), Expect = 0.38
Identities = 8/50 (16%), Positives = 15/50 (30%)
Query: 162 KKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
+ + + E EE E E E E+ + + +E
Sbjct: 382 QAPAAHQVDAEAASAAPEEPAALASEAHDETEPEVPEKAAPIPDPAKPDE 431
Score = 29.9 bits (67), Expect = 0.99
Identities = 9/46 (19%), Positives = 15/46 (32%)
Query: 166 EEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
E + E E+ G + + + EE E +E E
Sbjct: 368 EADIEREQPGDLAGQAPAAHQVDAEAASAAPEEPAALASEAHDETE 413
Score = 27.6 bits (61), Expect = 5.0
Identities = 4/51 (7%), Positives = 12/51 (23%)
Query: 157 KKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEE 207
+++ + + + +E E E E+
Sbjct: 373 REQPGDLAGQAPAAHQVDAEAASAAPEEPAALASEAHDETEPEVPEKAAPI 423
>gnl|CDD|220284 pfam09538, FYDLN_acid, Protein of unknown function (FYDLN_acid).
Members of this family are bacterial proteins with a
conserved motif [KR]FYDLN, sometimes flanked by a pair
of CXXC motifs, followed by a long region of low
complexity sequence in which roughly half the residues
are Asp and Glu, including multiple runs of five or more
acidic residues. The function of members of this family
is unknown.
Length = 104
Score = 33.1 bits (76), Expect = 0.024
Identities = 8/69 (11%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 143 LEPLLVLTLRKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEE 202
E + KK ++EE+E++ + +++++ + +++ + +++++
Sbjct: 38 PEVAKSRAPAADAEDAAKKDEDEEDEDDVVLD--DDDDDDDDDDLPDLDDDDVDLDDDDD 95
Query: 203 EEEEEEEEE 211
+ E++++E
Sbjct: 96 DFLEDDDDE 104
>gnl|CDD|215079 PLN00151, PLN00151, potassium transporter; Provisional.
Length = 852
Score = 34.7 bits (80), Expect = 0.026
Identities = 10/52 (19%), Positives = 21/52 (40%), Gaps = 6/52 (11%)
Query: 166 EEEEEEEEEGGEEEEEGGGGEEEGG------GEEEEEEEEEEEEEEEEEEEE 211
EEE G GG + G G E++ E+ ++++++ +
Sbjct: 1 MEEESSGGIGSSSNGSGGLVGTDSGESRWVDGSEDDSEDPASLDDDDDDRDS 52
Score = 28.2 bits (63), Expect = 3.8
Identities = 9/39 (23%), Positives = 17/39 (43%), Gaps = 5/39 (12%)
Query: 164 EEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEE 202
E++ E+ +++ + GGG EEEE+
Sbjct: 33 SEDDSEDPASLDDDDD-----DRDSGGGMLEEEEDGNMR 66
>gnl|CDD|227693 COG5406, COG5406, Nucleosome binding factor SPN, SPT16 subunit
[Transcription / DNA replication, recombination, and
repair / Chromatin structure and dynamics].
Length = 1001
Score = 35.0 bits (80), Expect = 0.028
Identities = 16/48 (33%), Positives = 25/48 (52%)
Query: 164 EEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
+E EEE E E ++E E+E E E+ E+E E + +EE+
Sbjct: 932 DESEEEVSEYEASSDDESDETDEDEESDESSEDLSEDESENDSSDEED 979
Score = 32.7 bits (74), Expect = 0.13
Identities = 14/48 (29%), Positives = 25/48 (52%)
Query: 164 EEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
+E +E +E+EE E E+ E E +EE+ E+ +E E + +
Sbjct: 947 DESDETDEDEESDESSEDLSEDESENDSSDEEDGEDWDELESKAAYDS 994
Score = 31.9 bits (72), Expect = 0.22
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 164 EEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEE 205
E+EE +E E+ E+E E +EE G + +E E + +
Sbjct: 954 EDEESDESSEDLSEDESENDSSDEEDGEDWDELESKAAYDSR 995
Score = 31.5 bits (71), Expect = 0.36
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 13/61 (21%)
Query: 164 EEEEEEEEEEEGGE-------------EEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEE 210
++E +E EEE E E+EE E+ +E E + +EE+ E+ +E
Sbjct: 927 SDDESDESEEEVSEYEASSDDESDETDEDEESDESSEDLSEDESENDSSDEEDGEDWDEL 986
Query: 211 E 211
E
Sbjct: 987 E 987
Score = 30.8 bits (69), Expect = 0.55
Identities = 11/46 (23%), Positives = 22/46 (47%)
Query: 165 EEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEE 210
+E +E+EE + E+ E + EE+ E+ +E E + +
Sbjct: 950 DETDEDEESDESSEDLSEDESENDSSDEEDGEDWDELESKAAYDSR 995
Score = 29.6 bits (66), Expect = 1.5
Identities = 12/48 (25%), Positives = 25/48 (52%)
Query: 164 EEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
++E +E +E+E +E E +E +EE+ E+ +E E + +
Sbjct: 946 DDESDETDEDEESDESSEDLSEDESENDSSDEEDGEDWDELESKAAYD 993
>gnl|CDD|217348 pfam03064, U79_P34, HSV U79 / HCMV P34. This family represents
herpes virus protein U79 and cytomegalovirus early
phosphoprotein P34 (UL112).
Length = 238
Score = 34.1 bits (78), Expect = 0.029
Identities = 14/59 (23%), Positives = 34/59 (57%)
Query: 153 KKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
K++ + +K KE+ +++EE+ +E++ GGG GG+ ++E +E+ ++ +
Sbjct: 169 KRRVEDSQKHKEDRRKKQEEKRRNDEDKRPGGGGGSSGGQSGLSTKDEPPKEKRQKHHD 227
Score = 32.1 bits (73), Expect = 0.16
Identities = 11/54 (20%), Positives = 30/54 (55%)
Query: 152 RKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEE 205
++K++ + +K +E+ +++EE+ +E++ GG G + ++E +E
Sbjct: 167 KEKRRVEDSQKHKEDRRKKQEEKRRNDEDKRPGGGGGSSGGQSGLSTKDEPPKE 220
Score = 31.8 bits (72), Expect = 0.18
Identities = 13/59 (22%), Positives = 33/59 (55%)
Query: 152 RKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEE 210
+++ + +K K++ +++EE+ E++ GGGG GG ++E +E+ ++ +
Sbjct: 169 KRRVEDSQKHKEDRRKKQEEKRRNDEDKRPGGGGGSSGGQSGLSTKDEPPKEKRQKHHD 227
Score = 31.4 bits (71), Expect = 0.28
Identities = 14/63 (22%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Query: 153 KKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGE----EEGGGEEEEEEEEEEEEEEEEE 208
+K K+ ++KK+EE+ +E++ G GG ++ +E+ ++ + E E +
Sbjct: 176 QKHKEDRRKKQEEKRRNDEDKRPGGGGGSSGGQSGLSTKDEPPKEKRQKHHDPERRLEPQ 235
Query: 209 EEE 211
E
Sbjct: 236 SHE 238
Score = 31.0 bits (70), Expect = 0.33
Identities = 12/57 (21%), Positives = 30/57 (52%)
Query: 152 RKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEE 208
RK+ K+K+K++ E+ ++ +E+ ++EE+ E++ G + ++E
Sbjct: 160 RKRSGKQKEKRRVEDSQKHKEDRRKKQEEKRRNDEDKRPGGGGGSSGGQSGLSTKDE 216
Score = 30.6 bits (69), Expect = 0.44
Identities = 11/56 (19%), Positives = 28/56 (50%)
Query: 156 KKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
K+K+K++ E+ ++ +E+ +EE+ ++ GG + ++E +E
Sbjct: 165 KQKEKRRVEDSQKHKEDRRKKQEEKRRNDEDKRPGGGGGSSGGQSGLSTKDEPPKE 220
Score = 30.6 bits (69), Expect = 0.45
Identities = 13/60 (21%), Positives = 30/60 (50%)
Query: 152 RKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
R+ + +K K+ +++EE+ ++ GGGG G ++E +E+ ++ + E
Sbjct: 170 RRVEDSQKHKEDRRKKQEEKRRNDEDKRPGGGGGSSGGQSGLSTKDEPPKEKRQKHHDPE 229
>gnl|CDD|227701 COG5414, COG5414, TATA-binding protein-associated factor
[Transcription].
Length = 392
Score = 34.7 bits (79), Expect = 0.029
Identities = 14/46 (30%), Positives = 24/46 (52%)
Query: 165 EEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEE 210
E E +E E E+++E E E + + +E EE+EE++E
Sbjct: 283 EIENKEVSEGDKEQQQEEVENAEAHKEEVQSDRPDEIGEEKEEDDE 328
Score = 34.3 bits (78), Expect = 0.038
Identities = 14/48 (29%), Positives = 25/48 (52%)
Query: 164 EEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
E E +E E + +++EE E + + +E EE+EE++E E
Sbjct: 283 EIENKEVSEGDKEQQQEEVENAEAHKEEVQSDRPDEIGEEKEEDDENE 330
Score = 29.3 bits (65), Expect = 1.6
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
Query: 151 LRKKKKKKKKKKKEEEEEEEEEEE------GGEEEEEGGGGEEEGGGEEEEEEEEEEEEE 204
L + KK+K+ EEE EE EE E +E G++E EE E E +EE
Sbjct: 252 LSRPALKKEKQGAEEEGEEGMSEEDLDVGAAEIENKEVSEGDKEQQQEEVENAEAHKEEV 311
Query: 205 EEEEEEE 211
+ + +E
Sbjct: 312 QSDRPDE 318
Score = 28.1 bits (62), Expect = 3.5
Identities = 16/49 (32%), Positives = 26/49 (53%)
Query: 163 KEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
KE E ++E+++ E E E + +E EE+EE++E EE E
Sbjct: 287 KEVSEGDKEQQQEEVENAEAHKEEVQSDRPDEIGEEKEEDDENEENERH 335
Score = 27.4 bits (60), Expect = 5.7
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Query: 161 KKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEE 208
K++++EE E E E + + + GEE+EE++E EE E E
Sbjct: 294 KEQQQEEVENAEAHKEEVQSD----RPDEIGEEKEEDDENEENERHTE 337
>gnl|CDD|227496 COG5167, VID27, Protein involved in vacuole import and degradation
[Intracellular trafficking and secretion].
Length = 776
Score = 34.6 bits (79), Expect = 0.030
Identities = 17/81 (20%), Positives = 30/81 (37%)
Query: 131 LKGERNVKLPKMLEPLLVLTLRKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGG 190
L+ N+ + L + R +K ++ E ++ + E++
Sbjct: 313 LRFLDNLDFLQFLSKYIGCLWRNLNNEKWGNEEAERKDYILDSSSVPLEKQFDDILYFEK 372
Query: 191 GEEEEEEEEEEEEEEEEEEEE 211
E E EE E EEE E+ E
Sbjct: 373 MEIENRNPEESEHEEEVEDYE 393
Score = 32.7 bits (74), Expect = 0.12
Identities = 16/58 (27%), Positives = 24/58 (41%), Gaps = 4/58 (6%)
Query: 158 KKKKKKEEEEEEEEEEEGGEEEEEGGGGE----EEGGGEEEEEEEEEEEEEEEEEEEE 211
+K EE E ++ + E + E+ E EE E EEE E+ E+E
Sbjct: 338 NEKWGNEEAERKDYILDSSSVPLEKQFDDILYFEKMEIENRNPEESEHEEEVEDYEDE 395
>gnl|CDD|215214 PLN02381, PLN02381, valyl-tRNA synthetase.
Length = 1066
Score = 34.9 bits (80), Expect = 0.031
Identities = 17/77 (22%), Positives = 39/77 (50%), Gaps = 7/77 (9%)
Query: 134 ERNVKLPKMLEPLLVLTLRKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEE 193
E+ + + LE RKKKK++K K+KE ++ + ++E + + + ++
Sbjct: 9 EKKILTEEELE-------RKKKKEEKAKEKELKKLKAAQKEAKAKLQAQQASDGTNVPKK 61
Query: 194 EEEEEEEEEEEEEEEEE 210
E++ + + E+E E+
Sbjct: 62 SEKKSRKRDVEDENPED 78
Score = 29.5 bits (66), Expect = 1.6
Identities = 15/70 (21%), Positives = 36/70 (51%), Gaps = 6/70 (8%)
Query: 148 VLTLRKKKKKKKKKKKEEEEEE------EEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEE 201
+LT + ++KKKK++K +E+E ++E + + ++ G E++ + +
Sbjct: 12 ILTEEELERKKKKEEKAKEKELKKLKAAQKEAKAKLQAQQASDGTNVPKKSEKKSRKRDV 71
Query: 202 EEEEEEEEEE 211
E+E E+ +
Sbjct: 72 EDENPEDFID 81
>gnl|CDD|218652 pfam05602, CLPTM1, Cleft lip and palate transmembrane protein 1
(CLPTM1). This family consists of several eukaryotic
cleft lip and palate transmembrane protein 1 sequences.
Cleft lip with or without cleft palate is a common birth
defect that is genetically complex. The nonsyndromic
forms have been studied genetically using linkage and
candidate-gene association studies with only partial
success in defining the loci responsible for orofacial
clefting. CLPTM1 encodes a transmembrane protein and has
strong homology to two Caenorhabditis elegans genes,
suggesting that CLPTM1 may belong to a new gene family.
This family also contains the human cisplatin resistance
related protein CRR9p which is associated with
CDDP-induced apoptosis.
Length = 437
Score = 34.2 bits (79), Expect = 0.035
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 4/33 (12%)
Query: 150 TLRKKKKKKKKK----KKEEEEEEEEEEEGGEE 178
T KKK KKK K E+EE EEE+ ++
Sbjct: 146 TYLPKKKVKKKNLLGGKSEKEEPEEEKTPAPDK 178
>gnl|CDD|218752 pfam05793, TFIIF_alpha, Transcription initiation factor IIF, alpha
subunit (TFIIF-alpha). Transcription initiation factor
IIF, alpha subunit (TFIIF-alpha) or RNA polymerase
II-associating protein 74 (RAP74) is the large subunit
of transcription factor IIF (TFIIF), which is essential
for accurate initiation and stimulates elongation by RNA
polymerase II.
Length = 528
Score = 34.2 bits (78), Expect = 0.037
Identities = 14/48 (29%), Positives = 19/48 (39%)
Query: 164 EEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
+ EE E E E E + EE EEE+ EEE ++
Sbjct: 291 SASGNDPEEREDKLSPEIPAKPEIEQDEDSEESEEEKNEEEGGLSKKG 338
Score = 31.9 bits (72), Expect = 0.24
Identities = 13/47 (27%), Positives = 23/47 (48%)
Query: 165 EEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
+ EE E++ E E++ EE EEE+ EEE ++ ++
Sbjct: 294 GNDPEEREDKLSPEIPAKPEIEQDEDSEESEEEKNEEEGGLSKKGKK 340
Score = 30.3 bits (68), Expect = 0.83
Identities = 12/47 (25%), Positives = 23/47 (48%)
Query: 164 EEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEE 210
+ EE E++ E + ++E E EEE+ EEE ++ ++
Sbjct: 294 GNDPEEREDKLSPEIPAKPEIEQDEDSEESEEEKNEEEGGLSKKGKK 340
Score = 30.3 bits (68), Expect = 0.85
Identities = 13/60 (21%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 154 KKKKKKKKKKEEEEEEEEEEEGGEEEE--EGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
K + ++ + EE EEE+ EEEGG ++ + + + G ++++ + ++ ++ + + E
Sbjct: 311 KPEIEQDEDSEESEEEKNEEEGGLSKKGKKLKKLKGKKNGLDKDDSDSGDDSDDSDIDGE 370
Score = 29.9 bits (67), Expect = 1.1
Identities = 10/41 (24%), Positives = 19/41 (46%)
Query: 158 KKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEE 198
++ K E + E E+ + EE EE GG ++ ++
Sbjct: 300 REDKLSPEIPAKPEIEQDEDSEESEEEKNEEEGGLSKKGKK 340
Score = 29.5 bits (66), Expect = 1.2
Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 19/79 (24%)
Query: 152 RKKKKKKKKKKKEEEEEEEEEEEGGEEEE-------------------EGGGGEEEGGGE 192
+K KK K+ +++ +E + + G++E E E
Sbjct: 253 KKLDDDKKGKRGGDDDADEYDSDDGDDEGREEDYISDSSASGNDPEEREDKLSPEIPAKP 312
Query: 193 EEEEEEEEEEEEEEEEEEE 211
E E++E+ EE EEE+ EEE
Sbjct: 313 EIEQDEDSEESEEEKNEEE 331
Score = 28.8 bits (64), Expect = 2.4
Identities = 17/61 (27%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 152 RKKKKKKKKKKKEEEEEEEEEEEGGEE--EEEGGGGEEEGGGEEEEEEEEEEEEEEEEEE 209
+KKKKK K KK+ +++++ + G ++ E + G++EG E+ + + EE E
Sbjct: 242 KKKKKKLAKNKKKLDDDKKGKRGGDDDADEYDSDDGDDEGREEDYISDSSASGNDPEERE 301
Query: 210 E 210
+
Sbjct: 302 D 302
Score = 28.4 bits (63), Expect = 2.8
Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Query: 149 LTLRKKKKKKKKKKK---EEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEE 205
L KKK KK K +++ +E + ++G +E E + + EE E++ E
Sbjct: 248 LAKNKKKLDDDKKGKRGGDDDADEYDSDDGDDEGREEDYISDSSASGNDPEEREDKLSPE 307
Query: 206 EEEEEE 211
+ E
Sbjct: 308 IPAKPE 313
Score = 28.4 bits (63), Expect = 3.6
Identities = 12/41 (29%), Positives = 21/41 (51%)
Query: 157 KKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEE 197
++ K E + E E++ EE E EEEGG ++ ++
Sbjct: 300 REDKLSPEIPAKPEIEQDEDSEESEEEKNEEEGGLSKKGKK 340
Score = 28.0 bits (62), Expect = 4.5
Identities = 17/60 (28%), Positives = 31/60 (51%)
Query: 149 LTLRKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEE 208
L + K K +E+EE E E+ GG ++ + EG E++ +E ++ E+ +EE
Sbjct: 180 LMMMKAAKNGPAAFGDEDEETEGEKGGGGRGKDLKIKDLEGDDEDDGDESDKGGEDGDEE 239
>gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A
(vWA) domain [General function prediction only].
Length = 4600
Score = 34.6 bits (79), Expect = 0.037
Identities = 12/49 (24%), Positives = 24/49 (48%)
Query: 161 KKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEE 209
++ + + +E E E E + G ++ E E + EEE ++ +EE
Sbjct: 3843 EEDTANQSDLDESEARELESDMNGVTKDSVVSENENSDSEEENQDLDEE 3891
Score = 31.9 bits (72), Expect = 0.26
Identities = 13/51 (25%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 164 EEEEEEEEEEEGGEE---EEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
+EE + E++E +E EE E+ + + E++E+ E+ EE
Sbjct: 4020 KEEADAEKDEPMQDEDPLEENNTLDEDIQQDDFSDLAEDDEKMNEDGFEEN 4070
Score = 31.5 bits (71), Expect = 0.33
Identities = 11/49 (22%), Positives = 22/49 (44%)
Query: 162 KKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEE 210
+++ + + +E E E G + E E + EEE ++ +EE
Sbjct: 3843 EEDTANQSDLDESEARELESDMNGVTKDSVVSENENSDSEEENQDLDEE 3891
Score = 31.5 bits (71), Expect = 0.35
Identities = 13/52 (25%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 163 KEEEEEEEEEEEGGEEE---EEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
+ +EE + E++E ++E EE +E+ ++ + E++E+ E+ EE
Sbjct: 4018 ENKEEADAEKDEPMQDEDPLEENNTLDEDIQQDDFSDLAEDDEKMNEDGFEE 4069
Score = 31.5 bits (71), Expect = 0.35
Identities = 18/78 (23%), Positives = 37/78 (47%)
Query: 133 GERNVKLPKMLEPLLVLTLRKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGE 192
E N + P E L + K +K+ K+ + E+ + E E +EE ++E +
Sbjct: 3974 QENNSQPPPENEDLDLPEDLKLDEKEGDVSKDSDLEDMDMEAADENKEEADAEKDEPMQD 4033
Query: 193 EEEEEEEEEEEEEEEEEE 210
E+ EE +E+ ++++
Sbjct: 4034 EDPLEENNTLDEDIQQDD 4051
Score = 31.1 bits (70), Expect = 0.49
Identities = 13/48 (27%), Positives = 26/48 (54%)
Query: 164 EEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
E+ ++++ + ++E+ G EE E EE E+ + +EE E+ E
Sbjct: 4045 EDIQQDDFSDLAEDDEKMNEDGFEENVQENEESTEDGVKSDEELEQGE 4092
Score = 31.1 bits (70), Expect = 0.49
Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 3/50 (6%)
Query: 165 EEEEEEEEEEGGEEE---EEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
EE +E+ ++ E E G EE +E EE E+ + +EE
Sbjct: 4038 EENNTLDEDIQQDDFSDLAEDDEKMNEDGFEENVQENEESTEDGVKSDEE 4087
Score = 30.7 bits (69), Expect = 0.60
Identities = 11/52 (21%), Positives = 25/52 (48%)
Query: 158 KKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEE 209
+ ++K E+ E +E+ E+ +E+E+EEE ++ ++E
Sbjct: 3917 LETEQKSNEQSAANNESDLVSKEDDNKALEDKDRQEKEDEEEMSDDVGIDDE 3968
Score = 30.7 bits (69), Expect = 0.63
Identities = 11/49 (22%), Positives = 23/49 (46%)
Query: 160 KKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEE 208
++ + + +E E E + G ++ E E + EEE ++ +EE
Sbjct: 3843 EEDTANQSDLDESEARELESDMNGVTKDSVVSENENSDSEEENQDLDEE 3891
Score = 30.4 bits (68), Expect = 0.80
Identities = 13/61 (21%), Positives = 31/61 (50%)
Query: 150 TLRKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEE 209
+L +K + ++ E E++ E+ E +E+ E+++ +E+E+EEE +
Sbjct: 3902 SLNEKLWDEPNEEDLLETEQKSNEQSAANNESDLVSKEDDNKALEDKDRQEKEDEEEMSD 3961
Query: 210 E 210
+
Sbjct: 3962 D 3962
Score = 30.4 bits (68), Expect = 0.91
Identities = 12/48 (25%), Positives = 20/48 (41%)
Query: 164 EEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
E EE+ + +E E E + G ++ E E + EEE +
Sbjct: 3839 ELANEEDTANQSDLDESEARELESDMNGVTKDSVVSENENSDSEEENQ 3886
Score = 30.4 bits (68), Expect = 0.96
Identities = 13/41 (31%), Positives = 23/41 (56%)
Query: 166 EEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEE 206
E++E+ E+G EE + E G + +EE E+ E E++
Sbjct: 4057 EDDEKMNEDGFEENVQENEESTEDGVKSDEELEQGEVPEDQ 4097
Score = 30.0 bits (67), Expect = 1.3
Identities = 11/58 (18%), Positives = 29/58 (50%), Gaps = 8/58 (13%)
Query: 162 KKEEEEEEEEEE--------EGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
K +E+E + ++ E +E +E E++ ++E+ EE +E+ ++++
Sbjct: 3994 KLDEKEGDVSKDSDLEDMDMEAADENKEEADAEKDEPMQDEDPLEENNTLDEDIQQDD 4051
Score = 29.2 bits (65), Expect = 1.9
Identities = 11/54 (20%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 157 KKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEE 210
+ ++K E+ E + +E++ E+ +E+E+EEE ++ ++E
Sbjct: 3917 LETEQKSNEQSAANNESDLVSKEDDNKALED--KDRQEKEDEEEMSDDVGIDDE 3968
Score = 29.2 bits (65), Expect = 2.3
Identities = 13/59 (22%), Positives = 25/59 (42%)
Query: 153 KKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
K + ++ +E EE E+ +EE E G E+ + + + + E +EE
Sbjct: 4061 KMNEDGFEENVQENEESTEDGVKSDEELEQGEVPEDQAIDNHPKMDAKSTFASAEADEE 4119
Score = 28.8 bits (64), Expect = 3.0
Identities = 11/49 (22%), Positives = 24/49 (48%)
Query: 163 KEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
++ ++++ + +E+ G EE EE E+ + +EE E+ E
Sbjct: 4045 EDIQQDDFSDLAEDDEKMNEDGFEENVQENEESTEDGVKSDEELEQGEV 4093
Score = 28.4 bits (63), Expect = 3.6
Identities = 12/49 (24%), Positives = 25/49 (51%)
Query: 158 KKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEE 206
K+ K E+++ +E+E EE + G ++E + +E + E E+
Sbjct: 3938 KEDDNKALEDKDRQEKEDEEEMSDDVGIDDEIQPDIQENNSQPPPENED 3986
Score = 28.0 bits (62), Expect = 4.4
Identities = 11/50 (22%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Query: 166 EEEEEEEEEGGEEEEEGG----GGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
E +E +EE E++E EE +E+ ++++ + E++E+
Sbjct: 4014 EAADENKEEADAEKDEPMQDEDPLEENNTLDEDIQQDDFSDLAEDDEKMN 4063
Score = 27.7 bits (61), Expect = 6.2
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 167 EEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEE 207
E++E+ E G EE E G + +EE E+ E E++
Sbjct: 4057 EDDEKMNEDGFEENVQENEESTEDGVKSDEELEQGEVPEDQ 4097
Score = 27.7 bits (61), Expect = 6.4
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 171 EEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEE 207
E EE GEE+ G G +G E+ +E+ +E E
Sbjct: 4128 ENEELGEEDGVRGNGTADGEFEQVQEDTSTPKEAMSE 4164
Score = 27.7 bits (61), Expect = 6.7
Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
Query: 164 EEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
E+ E+ EE E EE E+G +EE E+ E E++ +
Sbjct: 4060 EKMNEDGFEENVQENEES----TEDGVKSDEELEQGEVPEDQAIDNHP 4103
Score = 27.7 bits (61), Expect = 7.0
Identities = 11/52 (21%), Positives = 26/52 (50%)
Query: 160 KKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
+++ E E++ E E +E + E+++ +E+E+EEE ++
Sbjct: 3911 PNEEDLLETEQKSNEQSAANNESDLVSKEDDNKALEDKDRQEKEDEEEMSDD 3962
Score = 27.3 bits (60), Expect = 9.4
Identities = 10/61 (16%), Positives = 27/61 (44%)
Query: 151 LRKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEE 210
L + ++K ++ E + +E + E +E+ EE ++ ++E + + +E
Sbjct: 3916 LLETEQKSNEQSAANNESDLVSKEDDNKALEDKDRQEKEDEEEMSDDVGIDDEIQPDIQE 3975
Query: 211 E 211
Sbjct: 3976 N 3976
>gnl|CDD|225880 COG3343, RpoE, DNA-directed RNA polymerase, delta subunit
[Transcription].
Length = 175
Score = 33.6 bits (77), Expect = 0.037
Identities = 16/53 (30%), Positives = 37/53 (69%)
Query: 159 KKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
+ K++EE++E + ++ ++E+E E E++E +E+E+++E+EE+EE+
Sbjct: 122 EDKEEEEDDEVDSLDDENDDEDEDDDEIVEILIEDDEVDEDEDDDEDEEDEED 174
>gnl|CDD|219901 pfam08555, DUF1754, Eukaryotic family of unknown function
(DUF1754). This is a eukaryotic protein family of
unknown function.
Length = 90
Score = 32.4 bits (74), Expect = 0.037
Identities = 22/52 (42%), Positives = 30/52 (57%)
Query: 152 RKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEE 203
+KKKKKKKKK K +EE E+EE + E E E + E+ E+EE+
Sbjct: 20 KKKKKKKKKKNKSKEEVVTEKEEEEKSSAESDLKEGEEDEDNEKIEQEEDGM 71
Score = 30.1 bits (68), Expect = 0.22
Identities = 21/57 (36%), Positives = 30/57 (52%)
Query: 148 VLTLRKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEE 204
KKKKKKKKKK + +EE E+E E+ +E E+ E+ E+EE+
Sbjct: 15 KKIDVKKKKKKKKKKNKSKEEVVTEKEEEEKSSAESDLKEGEEDEDNEKIEQEEDGM 71
Score = 25.5 bits (56), Expect = 8.6
Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Query: 153 KKKKKK--KKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEE 209
K KK KKKKK++++ + +EE E+EEE E E EE+E+ E+ E+EE+
Sbjct: 13 KGKKIDVKKKKKKKKKKNKSKEEVVTEKEEEEKSSAESDLKEGEEDEDNEKIEQEEDGM 71
>gnl|CDD|148630 pfam07133, Merozoite_SPAM, Merozoite surface protein (SPAM). This
family consists of several Plasmodium falciparum SPAM
(secreted polymorphic antigen associated with
merozoites) proteins. Variation among SPAM alleles is
the result of deletions and amino acid substitutions in
non-repetitive sequences within and flanking the alanine
heptad-repeat domain. Heptad repeats in which the a and
d position contain hydrophobic residues generate
amphipathic alpha-helices which give rise to helical
bundles or coiled-coil structures in proteins. SPAM is
an example of a P. falciparum antigen in which a
repetitive sequence has features characteristic of a
well-defined structural element.
Length = 164
Score = 33.3 bits (76), Expect = 0.038
Identities = 26/59 (44%), Positives = 40/59 (67%)
Query: 153 KKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
K+ + K +K+E++EEEEEE+E EE E EEE +EEEEEE+EE+ + ++ E+
Sbjct: 38 KENEDVKDEKQEDDEEEEEEDEEEIEEPEDIEDEEEIVEDEEEEEEDEEDNVDLKDIEK 96
Score = 32.5 bits (74), Expect = 0.089
Identities = 24/54 (44%), Positives = 38/54 (70%)
Query: 158 KKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
K +K++++EEEEEE+EE EE E+ EE EEEEEE+EE+ + ++ E++
Sbjct: 44 KDEKQEDDEEEEEEDEEEIEEPEDIEDEEEIVEDEEEEEEDEEDNVDLKDIEKK 97
Score = 32.1 bits (73), Expect = 0.099
Identities = 28/80 (35%), Positives = 47/80 (58%)
Query: 132 KGERNVKLPKMLEPLLVLTLRKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGG 191
K E K +LE + + + K+ K+ + ++E++E++EEE E+EEE E+
Sbjct: 12 KPEEEKKDENLLEHVKITSWDKEDIIKENEDVKDEKQEDDEEEEEEDEEEIEEPEDIEDE 71
Query: 192 EEEEEEEEEEEEEEEEEEEE 211
EE E+EEEEEE+EE+ +
Sbjct: 72 EEIVEDEEEEEEDEEDNVDL 91
>gnl|CDD|217783 pfam03896, TRAP_alpha, Translocon-associated protein (TRAP), alpha
subunit. The alpha-subunit of the TRAP complex (TRAP
alpha) is a single-spanning membrane protein of the
endoplasmic reticulum (ER) which is found in proximity
of nascent polypeptide chains translocating across the
membrane.
Length = 281
Score = 34.0 bits (78), Expect = 0.043
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 165 EEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEE 201
E+EE E++ +EE+E E+E EEEE+EE E
Sbjct: 36 EDEEAEDDVVDEDEEDEAVVEEDENELTEEEEDEEGE 72
Score = 31.3 bits (71), Expect = 0.28
Identities = 27/75 (36%), Positives = 36/75 (48%), Gaps = 7/75 (9%)
Query: 138 KLPK-MLEPLLVL--TLRKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEE 194
KLPK +L LL L K ++ E+EE E +E+ EE+ EE
Sbjct: 2 KLPKLLLLTLLAFPAVLLTFGNGKGPFASAQDLTEDEEAEDDVVDED----EEDEAVVEE 57
Query: 195 EEEEEEEEEEEEEEE 209
+E E EEEE+EE E
Sbjct: 58 DENELTEEEEDEEGE 72
Score = 30.1 bits (68), Expect = 0.63
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 173 EEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
+ E+EE + E+E EE+E E EEEE+E
Sbjct: 31 AQDLTEDEEAEDDVVDEDEEDEAVVEEDENELTEEEEDE 69
>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3. This
protein, which interacts with both microtubules and
TRAF3 (tumour necrosis factor receptor-associated factor
3), is conserved from worms to humans. The N-terminal
region is the microtubule binding domain and is
well-conserved; the C-terminal 100 residues, also
well-conserved, constitute the coiled-coil region which
binds to TRAF3. The central region of the protein is
rich in lysine and glutamic acid and carries KKE motifs
which may also be necessary for tubulin-binding, but
this region is the least well-conserved.
Length = 506
Score = 34.1 bits (78), Expect = 0.045
Identities = 20/60 (33%), Positives = 38/60 (63%)
Query: 152 RKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
K++ K++KKKK+E+ +EE ++ +EE + +E E+E++ EE + EEE++ E
Sbjct: 109 EKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDREEEKKRER 168
Score = 34.1 bits (78), Expect = 0.050
Identities = 20/60 (33%), Positives = 39/60 (65%)
Query: 152 RKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
+++ K++KKKKKE+ +EE ++ + EE +E +E+ +E++ EE + EEE++ E
Sbjct: 110 KEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDREEEKKRERV 169
Score = 30.6 bits (69), Expect = 0.60
Identities = 18/60 (30%), Positives = 39/60 (65%)
Query: 152 RKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
++K++ K++KKK++E+ +EE ++ +EE + +E+E++ EE + EEE++ E
Sbjct: 108 KEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDREEEKKRE 167
Score = 30.6 bits (69), Expect = 0.64
Identities = 18/63 (28%), Positives = 40/63 (63%)
Query: 149 LTLRKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEE 208
T K+ K + K+EE+E+E+ +EE +++E+ ++ +EE +E+ +E+E+E+
Sbjct: 91 KTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEK 150
Query: 209 EEE 211
E++
Sbjct: 151 EKK 153
Score = 30.2 bits (68), Expect = 0.78
Identities = 20/56 (35%), Positives = 30/56 (53%)
Query: 152 RKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEE 207
R KK KKK +++E EEE++ E G EE EE E+EE++ ++ E
Sbjct: 174 RPKKPPKKKPPNKKKEPPEEEKQRQAAREAVKGKPEEPDVNEEREKEEDDGKDRET 229
Score = 30.2 bits (68), Expect = 0.87
Identities = 19/60 (31%), Positives = 36/60 (60%)
Query: 152 RKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
+ K++KKKKK++ +EE ++ + E +E+ E+E E++ EE + EEE++ E
Sbjct: 111 EQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDREEEKKRERVR 170
Score = 29.9 bits (67), Expect = 0.95
Identities = 15/57 (26%), Positives = 30/57 (52%)
Query: 154 KKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEE 210
K K K +E + E + E+E+E E++ E+ +EE ++ + +EE +E+
Sbjct: 84 GSKGPAAKTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEK 140
Score = 29.9 bits (67), Expect = 1.2
Identities = 16/60 (26%), Positives = 43/60 (71%)
Query: 152 RKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
++++K+K++ K+E+++++E+ +E ++ + +E+ +E+E+E+E++ EE + EEE
Sbjct: 104 KEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDREEE 163
Score = 29.5 bits (66), Expect = 1.5
Identities = 19/84 (22%), Positives = 41/84 (48%)
Query: 128 DKNLKGERNVKLPKMLEPLLVLTLRKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEE 187
++ + ++ K EP + K+K+ K+KE+E+E++ EE EEE+
Sbjct: 111 EQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDREEEKKRERVR 170
Query: 188 EGGGEEEEEEEEEEEEEEEEEEEE 211
++ +++ +++E EEE
Sbjct: 171 AKSRPKKPPKKKPPNKKKEPPEEE 194
Score = 29.1 bits (65), Expect = 1.7
Identities = 17/59 (28%), Positives = 35/59 (59%)
Query: 153 KKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
K K K+ K E +EEE+E+E +EE++ + + ++ + +EE +E+ +E+E+
Sbjct: 90 AKTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEK 148
Score = 28.7 bits (64), Expect = 2.2
Identities = 16/59 (27%), Positives = 31/59 (52%)
Query: 153 KKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
K K K + +E + E EE+E+ EE+ +E+ +EE ++ + +EE +E+
Sbjct: 82 KGGSKGPAAKTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEK 140
Score = 28.7 bits (64), Expect = 2.5
Identities = 18/59 (30%), Positives = 33/59 (55%)
Query: 153 KKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
+K K K + +E + E G EEE+E +EE ++E+ +EE ++ + +EE +E
Sbjct: 81 EKGGSKGPAAKTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKE 139
Score = 28.7 bits (64), Expect = 2.7
Identities = 15/59 (25%), Positives = 38/59 (64%)
Query: 153 KKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
K+++K+K++ +EE+++++E+ E ++ E + +E+E+E+E++ EE + E
Sbjct: 103 GKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDRE 161
Score = 28.3 bits (63), Expect = 3.0
Identities = 16/58 (27%), Positives = 31/58 (53%)
Query: 152 RKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEE 209
R + K + KK +++ +++E EE++ E G EE + EE E+EE++ +
Sbjct: 168 RVRAKSRPKKPPKKKPPNKKKEPPEEEKQRQAAREAVKGKPEEPDVNEEREKEEDDGK 225
Score = 27.9 bits (62), Expect = 4.2
Identities = 17/60 (28%), Positives = 32/60 (53%)
Query: 152 RKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
K K K+ K E +EEE+E+ +EE+ E+ ++ + +EE +E+ +E+E
Sbjct: 88 PAAKTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKE 147
Score = 27.9 bits (62), Expect = 4.7
Identities = 16/60 (26%), Positives = 38/60 (63%)
Query: 152 RKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
K+++K+K++ +EE+++++E+ EE ++ EE +E+E+E+E++ EE +
Sbjct: 101 ESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDR 160
Score = 27.5 bits (61), Expect = 6.5
Identities = 14/58 (24%), Positives = 37/58 (63%)
Query: 154 KKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
K + K++++E+E+ +EE++ +E+ + + + E +E+ +E+E+E+E++ E
Sbjct: 98 PKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVE 155
Score = 26.8 bits (59), Expect = 9.4
Identities = 16/60 (26%), Positives = 32/60 (53%)
Query: 152 RKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
R K+K+K+K+K+ EE + EEE E ++ ++ +++E EEE++ +
Sbjct: 141 RPPKEKEKEKEKKVEEPRDREEEKKRERVRAKSRPKKPPKKKPPNKKKEPPEEEKQRQAA 200
>gnl|CDD|235549 PRK05658, PRK05658, RNA polymerase sigma factor RpoD; Validated.
Length = 619
Score = 34.0 bits (79), Expect = 0.047
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 176 GEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEE 210
G + G E EE +++E+EEEEE+E +
Sbjct: 172 GFVDPNAEEDPAHVGSELEELDDDEDEEEEEDEND 206
Score = 32.5 bits (75), Expect = 0.17
Identities = 12/42 (28%), Positives = 20/42 (47%)
Query: 170 EEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
+ E+ G EE +E+EEEEE+E ++ +E
Sbjct: 173 FVDPNAEEDPAHVGSELEELDDDEDEEEEEDENDDSLAADES 214
Score = 32.1 bits (74), Expect = 0.22
Identities = 12/43 (27%), Positives = 19/43 (44%)
Query: 169 EEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
+ + G EE E+EEEEE+E ++ +E E
Sbjct: 173 FVDPNAEEDPAHVGSELEELDDDEDEEEEEDENDDSLAADESE 215
Score = 31.3 bits (72), Expect = 0.34
Identities = 10/43 (23%), Positives = 17/43 (39%)
Query: 168 EEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEE 210
+ E E + +EEEEE+E ++ +E E
Sbjct: 173 FVDPNAEEDPAHVGSELEELDDDEDEEEEEDENDDSLAADESE 215
Score = 27.5 bits (62), Expect = 5.4
Identities = 12/48 (25%), Positives = 21/48 (43%), Gaps = 10/48 (20%)
Query: 164 EEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
EE+ EE + ++E+EEEEE+E ++ +E
Sbjct: 176 PNAEEDPAHVGSELEELD----------DDEDEEEEEDENDDSLAADE 213
>gnl|CDD|212055 cd11486, SLC5sbd_SGLT1, Na(+)/glucose cotransporter SGLT1;solute
binding domain. Human SGLT1 (hSGLT1) is a
high-affinity/low-capacity glucose transporter, which
can also transport galactose. In the transport
mechanism, two Na+ ions first bind to the extracellular
side of the transporter and induce a conformational
change in the glucose binding site. This results in an
increased affinity for glucose. A second conformational
change in the transporter follows, bringing the Na+ and
glucose binding sites to the inner surface of the
membrane. Glucose is then released, followed by the Na+
ions. In the process, hSGLT1 is also able to transport
water and urea and may be a major pathway for transport
of these across the intestinal brush-border membrane.
hSGLT1 is encoded by the SLC5A1 gene and expressed
mostly in the intestine, but also in the trachea,
kidney, heart, brain, testis, and prostate. The
WHO/UNICEF oral rehydration solution (ORS) for the
treatment of secretory diarrhea contains salt and
glucose. The glucose, along with sodium ions, is
transported by hSGLT1 and water is either co-transported
along with these or follows by osmosis. Mutations in
SGLT1 are associated with intestinal glucose galactose
malabsorption (GGM). Up-regulation of intestinal SGLT1
may protect against enteric infections. SGLT1 is
expressed in colorectal, head and neck, and prostate
tumors. Epidermal growth factor receptor (EGFR)
functions in cell survival by stabilizing SGLT1, and
thereby maintaining intracellular glucose levels. SGLT1
is predicted to have 14 membrane-spanning regions. This
subgroup belongs to the solute carrier 5
(SLC5)transporter family.
Length = 635
Score = 34.1 bits (78), Expect = 0.047
Identities = 17/76 (22%), Positives = 33/76 (43%), Gaps = 11/76 (14%)
Query: 147 LVLTLRKKKKKKKKKKKEEEEEEEEEEEGG-EEEEEGGG----------GEEEGGGEEEE 195
L +LR +++ ++ E+E+E E +EE + G G ++G +
Sbjct: 533 LCWSLRNSTEERIDLDADDWTEDEDENEMETDEERKKPGCCRKAYNWFCGFDQGKAPKLT 592
Query: 196 EEEEEEEEEEEEEEEE 211
EEEE + + + E
Sbjct: 593 EEEEAALKMKMTDTSE 608
>gnl|CDD|220413 pfam09805, Nop25, Nucleolar protein 12 (25kDa). Members of this
family of proteins are part of the yeast nuclear pore
complex-associated pre-60S ribosomal subunit. The family
functions as a highly conserved exonuclease that is
required for the 5'-end maturation of 5.8S and 25S
rRNAs, demonstrating that 5'-end processing also has a
redundant pathway. Nop25 binds late pre-60S ribosomes,
accompanying them from the nucleolus to the nuclear
periphery; and there is evidence for both physical and
functional links between late 60S subunit processing and
export.
Length = 134
Score = 32.7 bits (75), Expect = 0.047
Identities = 19/60 (31%), Positives = 31/60 (51%)
Query: 152 RKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
RK++ +K+ K+++E + EEE EE+ E E+ E E E + EEE +E
Sbjct: 61 RKQELEKQLKERKEALKLLEEENDDEEDAETEDTEDVEDDEWEGFPEPTVTDYEEEYIDE 120
Score = 32.3 bits (74), Expect = 0.059
Identities = 17/56 (30%), Positives = 31/56 (55%)
Query: 153 KKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEE 208
+K+ K++K+ + EEE ++EE E E+ ++E G E + EEE +E+
Sbjct: 66 EKQLKERKEALKLLEEENDDEEDAETEDTEDVEDDEWEGFPEPTVTDYEEEYIDED 121
Score = 30.8 bits (70), Expect = 0.26
Identities = 15/60 (25%), Positives = 31/60 (51%)
Query: 152 RKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
RK+ ++++K++ E++ +E +E EEE + E E+ E++E E E +
Sbjct: 54 RKRIREERKQELEKQLKERKEALKLLEEENDDEEDAETEDTEDVEDDEWEGFPEPTVTDY 113
Score = 28.8 bits (65), Expect = 1.1
Identities = 17/59 (28%), Positives = 38/59 (64%)
Query: 152 RKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEE 210
++++++ +++K+ EE ++E E+ +E +E EE +EE+ E E+ E+ E++E E
Sbjct: 45 KEREERIEERKRIREERKQELEKQLKERKEALKLLEEENDDEEDAETEDTEDVEDDEWE 103
>gnl|CDD|221203 pfam11748, DUF3306, Protein of unknown function (DUF3306). This
family of proteobacterial species proteins has no known
function.
Length = 115
Score = 32.3 bits (74), Expect = 0.049
Identities = 18/51 (35%), Positives = 22/51 (43%)
Query: 161 KKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
++K EE E EEE EEEEE E E+EE EE +
Sbjct: 8 RRKLAVRAEEPAEPAETAEEEAAAAAPAPAPEEEEEAELEDEELLEELDLP 58
Score = 29.6 bits (67), Expect = 0.44
Identities = 15/57 (26%), Positives = 23/57 (40%)
Query: 155 KKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
++K + +E E E EE EEE E E+EE EE + + +
Sbjct: 8 RRKLAVRAEEPAEPAETAEEEAAAAAPAPAPEEEEEAELEDEELLEELDLPDPDTLT 64
Score = 27.3 bits (61), Expect = 3.4
Identities = 14/59 (23%), Positives = 23/59 (38%)
Query: 153 KKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
++K + ++ E E EEE EEE E+EE EE + + +
Sbjct: 8 RRKLAVRAEEPAEPAETAEEEAAAAAPAPAPEEEEEAELEDEELLEELDLPDPDTLTPG 66
>gnl|CDD|235401 PRK05306, infB, translation initiation factor IF-2; Validated.
Length = 746
Score = 33.7 bits (78), Expect = 0.055
Identities = 17/64 (26%), Positives = 25/64 (39%)
Query: 148 VLTLRKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEE 207
+ + +K++ K++ EEE + E EE E EE E EE E E
Sbjct: 37 TVEEEEARKEEAKREAEEEAKAEAEEAAAAEAEEEAKAEAAAAAPAEEAAEAAAAAEAAA 96
Query: 208 EEEE 211
E
Sbjct: 97 RPAE 100
Score = 27.9 bits (63), Expect = 4.5
Identities = 26/83 (31%), Positives = 33/83 (39%), Gaps = 3/83 (3%)
Query: 129 KNLKGERNVKLPKMLEPLLVLTLRKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEE 188
L E V ++LE L L + + K EEEE +EE + EEE EE
Sbjct: 7 YELAKELGVSSKELLEKLKELGI---EVKSHSSTVEEEEARKEEAKREAEEEAKAEAEEA 63
Query: 189 GGGEEEEEEEEEEEEEEEEEEEE 211
E EEE + E EE
Sbjct: 64 AAAEAEEEAKAEAAAAAPAEEAA 86
>gnl|CDD|218561 pfam05340, DUF740, Protein of unknown function (DUF740). This
family consists of several uncharacterized plant
proteins of unknown function.
Length = 565
Score = 33.8 bits (77), Expect = 0.057
Identities = 18/41 (43%), Positives = 25/41 (60%)
Query: 169 EEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEE 209
EEEEE EE+E +E G +E+ EEEEEEE + ++
Sbjct: 140 LEEEEEVEMEEDEEYYEKEPGKVVDEKSEEEEEEELKTMKD 180
Score = 33.8 bits (77), Expect = 0.061
Identities = 18/40 (45%), Positives = 24/40 (60%)
Query: 164 EEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEE 203
EEEEE E EE+ E+E G +E EEEEEE + ++
Sbjct: 141 EEEEEVEMEEDEEYYEKEPGKVVDEKSEEEEEEELKTMKD 180
Score = 33.1 bits (75), Expect = 0.10
Identities = 18/41 (43%), Positives = 24/41 (58%)
Query: 168 EEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEE 208
EEEEE EE+EE E +E+ EEEEEEE + ++
Sbjct: 140 LEEEEEVEMEEDEEYYEKEPGKVVDEKSEEEEEEELKTMKD 180
Score = 31.9 bits (72), Expect = 0.21
Identities = 18/41 (43%), Positives = 25/41 (60%)
Query: 170 EEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEE 210
EEEE E EE+ E+E G +E+ EEEEEEE + ++
Sbjct: 140 LEEEEEVEMEEDEEYYEKEPGKVVDEKSEEEEEEELKTMKD 180
Score = 30.4 bits (68), Expect = 0.70
Identities = 17/45 (37%), Positives = 24/45 (53%)
Query: 163 KEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEE 207
+ EEEEE E E+EE + E+ EEEEEEE + ++
Sbjct: 136 PDLVLEEEEEVEMEEDEEYYEKEPGKVVDEKSEEEEEEELKTMKD 180
>gnl|CDD|218258 pfam04774, HABP4_PAI-RBP1, Hyaluronan / mRNA binding family. This
family includes the HABP4 family of hyaluronan-binding
proteins, and the PAI-1 mRNA-binding protein, PAI-RBP1.
HABP4 has been observed to bind hyaluronan (a
glucosaminoglycan), but it is not known whether this is
its primary role in vivo. It has also been observed to
bind RNA, but with a lower affinity than that for
hyaluronan. PAI-1 mRNA-binding protein specifically
binds the mRNA of type-1 plasminogen activator inhibitor
(PAI-1), and is thought to be involved in regulation of
mRNA stability. However, in both cases, the sequence
motifs predicted to be important for ligand binding are
not conserved throughout the family, so it is not known
whether members of this family share a common function.
Length = 106
Score = 32.0 bits (73), Expect = 0.061
Identities = 21/47 (44%), Positives = 26/47 (55%)
Query: 165 EEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
++E E E EEEE EE+ EEE +E EEEE EEEE+
Sbjct: 30 VKDEIAELTEEQGEEEEKNEVEEKQAVEEEANKEGVVEEEEVEEEED 76
Score = 32.0 bits (73), Expect = 0.061
Identities = 21/49 (42%), Positives = 29/49 (59%)
Query: 163 KEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
++E E EE GEEEE+ E++ EE +E EEEE EEEE++
Sbjct: 29 SVKDEIAELTEEQGEEEEKNEVEEKQAVEEEANKEGVVEEEEVEEEEDK 77
Score = 30.1 bits (68), Expect = 0.29
Identities = 21/43 (48%), Positives = 25/43 (58%)
Query: 164 EEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEE 206
E EE+ EEEE E EE+ EE EEEE EEEE++E
Sbjct: 36 ELTEEQGEEEEKNEVEEKQAVEEEANKEGVVEEEEVEEEEDKE 78
>gnl|CDD|221275 pfam11861, DUF3381, Domain of unknown function (DUF3381). This
domain is functionally uncharacterized. This domain is
found in eukaryotes. This presumed domain is typically
between 156 to 174 amino acids in length. This domain is
found associated with pfam07780, pfam01728.
Length = 154
Score = 32.6 bits (75), Expect = 0.062
Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 10/61 (16%)
Query: 151 LRKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEE 210
+RK KK+K+EEEEEE E EE EEE+ +E E+E + + E+ E
Sbjct: 90 VRKLLGLDKKEKEEEEEEEVEVEELDEEEQI----------DELLEKELAKLKREKRREN 139
Query: 211 E 211
E
Sbjct: 140 E 140
Score = 27.6 bits (62), Expect = 3.5
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Query: 151 LRKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEE 210
+K K +KK +K +++E+EE EEE E EE EE+ +E E+E + + E+
Sbjct: 80 FKKLLKWRKKVRKLLGLDKKEKEEEEEEEVE----VEELDEEEQIDELLEKELAKLKREK 135
Query: 211 E 211
Sbjct: 136 R 136
Score = 26.9 bits (60), Expect = 5.3
Identities = 18/63 (28%), Positives = 35/63 (55%), Gaps = 10/63 (15%)
Query: 149 LTLRKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEE 208
L L KK+K+++++++ E EE +EEE+ E E+ E + + E+ E E ++
Sbjct: 94 LGLDKKEKEEEEEEEVEVEELDEEEQIDELLEK----------ELAKLKREKRRENERKQ 143
Query: 209 EEE 211
+E
Sbjct: 144 KEI 146
>gnl|CDD|235795 PRK06402, rpl12p, 50S ribosomal protein L12P; Reviewed.
Length = 106
Score = 31.8 bits (73), Expect = 0.069
Identities = 15/26 (57%), Positives = 18/26 (69%)
Query: 185 GEEEGGGEEEEEEEEEEEEEEEEEEE 210
EE++EEEEEEEE+EE EEE
Sbjct: 71 AAAAAAAEEKKEEEEEEEEKEESEEE 96
Score = 31.5 bits (72), Expect = 0.085
Identities = 15/26 (57%), Positives = 18/26 (69%)
Query: 186 EEEGGGEEEEEEEEEEEEEEEEEEEE 211
EE++EEEEEEEE+EE EEE
Sbjct: 71 AAAAAAAEEKKEEEEEEEEKEESEEE 96
Score = 30.7 bits (70), Expect = 0.16
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 184 GGEEEGGGEEEEEEEEEEEEEEEEEE 209
E++EEEEEEEE+EE EEE
Sbjct: 71 AAAAAAAEEKKEEEEEEEEKEESEEE 96
Score = 30.7 bits (70), Expect = 0.18
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 160 KKKKEEEEEEEEEEEGGEEEEEGGGG 185
+E++EEEEEEEE E EEE G
Sbjct: 75 AAAEEKKEEEEEEEEKEESEEEAAAG 100
Score = 28.8 bits (65), Expect = 0.95
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 183 GGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
++EEEEEEEE+EE EEE
Sbjct: 71 AAAAAAAEEKKEEEEEEEEKEESEEEAAA 99
Score = 28.4 bits (64), Expect = 1.0
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 153 KKKKKKKKKKKEEEEEEEEEEEGGE 177
++KK++++EEEE+EE EEE
Sbjct: 75 AAAEEKKEEEEEEEEKEESEEEAAA 99
Score = 28.4 bits (64), Expect = 1.3
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 159 KKKKKEEEEEEEEEEEGGEEEEEGGG 184
++++EEEEEEEE+ EEE G
Sbjct: 75 AAAEEKKEEEEEEEEKEESEEEAAAG 100
Score = 26.5 bits (59), Expect = 5.7
Identities = 13/29 (44%), Positives = 15/29 (51%)
Query: 179 EEEGGGGEEEGGGEEEEEEEEEEEEEEEE 207
EE+ EEEEEE+EE EEE
Sbjct: 71 AAAAAAAEEKKEEEEEEEEKEESEEEAAA 99
Score = 25.7 bits (57), Expect = 8.4
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 154 KKKKKKKKKKEEEEEEEEEEEGGEE 178
++KK+++EEEEE+EE EE
Sbjct: 75 AAAEEKKEEEEEEEEKEESEEEAAA 99
>gnl|CDD|184724 PRK14520, rpsP, 30S ribosomal protein S16; Provisional.
Length = 155
Score = 32.4 bits (74), Expect = 0.071
Identities = 6/33 (18%), Positives = 7/33 (21%)
Query: 153 KKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGG 185
KKKK + E E
Sbjct: 123 TPKKKKAAAEAAAAEAAAPAAEAAAAAAAEEEA 155
Score = 31.2 bits (71), Expect = 0.18
Identities = 9/33 (27%), Positives = 11/33 (33%)
Query: 150 TLRKKKKKKKKKKKEEEEEEEEEEEGGEEEEEG 182
T +KKK + E E EEE
Sbjct: 123 TPKKKKAAAEAAAAEAAAPAAEAAAAAAAEEEA 155
Score = 30.8 bits (70), Expect = 0.27
Identities = 7/35 (20%), Positives = 8/35 (22%)
Query: 150 TLRKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGG 184
KKKK + E E E
Sbjct: 121 ATTPKKKKAAAEAAAAEAAAPAAEAAAAAAAEEEA 155
Score = 30.4 bits (69), Expect = 0.37
Identities = 9/37 (24%), Positives = 10/37 (27%)
Query: 152 RKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEE 188
+ KKKK E E E EE
Sbjct: 119 AEATTPKKKKAAAEAAAAEAAAPAAEAAAAAAAEEEA 155
Score = 28.1 bits (63), Expect = 2.1
Identities = 10/62 (16%), Positives = 15/62 (24%)
Query: 150 TLRKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEE 209
TL+ + K K + E + E + E E
Sbjct: 92 TLKVAEPKPSKLELFNAALAEADGGPTAEATTPKKKKAAAEAAAAEAAAPAAEAAAAAAA 151
Query: 210 EE 211
EE
Sbjct: 152 EE 153
Score = 27.7 bits (62), Expect = 2.7
Identities = 10/37 (27%), Positives = 11/37 (29%)
Query: 153 KKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEG 189
+ KKKK E E E EEE
Sbjct: 119 AEATTPKKKKAAAEAAAAEAAAPAAEAAAAAAAEEEA 155
Score = 27.0 bits (60), Expect = 5.1
Identities = 9/56 (16%), Positives = 11/56 (19%)
Query: 156 KKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
K K + E + E E E EEE
Sbjct: 99 KPSKLELFNAALAEADGGPTAEATTPKKKKAAAEAAAAEAAAPAAEAAAAAAAEEE 154
>gnl|CDD|220271 pfam09507, CDC27, DNA polymerase subunit Cdc27. This protein forms
the C subunit of DNA polymerase delta. It carries the
essential residues for binding to the Pol1 subunit of
polymerase alpha, from residues 293-332, which are
characterized by the motif D--G--VT, referred to as the
DPIM motif. The first 160 residues of the protein form
the minimal domain for binding to the B subunit, Cdc1,
of polymerase delta, the final 10 C-terminal residues,
362-372, being the DNA sliding clamp, PCNA, binding
motif.
Length = 427
Score = 33.3 bits (76), Expect = 0.074
Identities = 20/68 (29%), Positives = 35/68 (51%)
Query: 144 EPLLVLTLRKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEE 203
EP +++ ++K+KE+ + ++ E +E+EE E EEE EE E
Sbjct: 273 EPKPSGERSDSEEETEEKEKEKRKRLKKMMEDEDEDEEMEIVPESPVEEEESEEPEPPPL 332
Query: 204 EEEEEEEE 211
++EEE+E
Sbjct: 333 PKKEEEKE 340
Score = 33.3 bits (76), Expect = 0.087
Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 10/69 (14%)
Query: 153 KKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEE----------EEE 202
K+KK+KK+ + +EE EEE G + E G +E+E+E+E EEE
Sbjct: 227 KEKKEKKEASESTVKEESEEESGKRDVILEDESAEPTGLDEDEDEDEPKPSGERSDSEEE 286
Query: 203 EEEEEEEEE 211
EE+E+E+
Sbjct: 287 TEEKEKEKR 295
Score = 32.5 bits (74), Expect = 0.15
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Query: 134 ERNVKLPKMLEPLLVLTLRKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEE 193
E + E ++K+K+K+K+ ++ E+E+E+E E E EEE E
Sbjct: 269 EDEDEPKPSGERSDSEEETEEKEKEKRKRLKKMMEDEDEDEEMEIVPESPVEEEE---SE 325
Query: 194 EEEEEEEEEEEEEEEE 209
E E ++EEE+EE
Sbjct: 326 EPEPPPLPKKEEEKEE 341
Score = 31.3 bits (71), Expect = 0.29
Identities = 19/59 (32%), Positives = 30/59 (50%)
Query: 153 KKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
+K+K+K+ KK E+E+E+EE E E EE ++EEE+EE +
Sbjct: 291 EKEKRKRLKKMMEDEDEDEEMEIVPESPVEEEESEEPEPPPLPKKEEEKEEVTVSPDGG 349
Score = 29.4 bits (66), Expect = 1.3
Identities = 20/60 (33%), Positives = 30/60 (50%)
Query: 152 RKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
K+K+K+ KK E+E+E+EE E E E EE ++EEE+EE +
Sbjct: 291 EKEKRKRLKKMMEDEDEDEEMEIVPESPVEEEESEEPEPPPLPKKEEEKEEVTVSPDGGR 350
>gnl|CDD|222648 pfam14283, DUF4366, Domain of unknown function (DUF4366). This
family of proteins is found in bacteria and eukaryotes.
Proteins in this family are typically between 227 and
387 amino acids in length.
Length = 213
Score = 32.7 bits (75), Expect = 0.081
Identities = 10/35 (28%), Positives = 19/35 (54%)
Query: 153 KKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEE 187
K K K+++K +++ +E + G E+EEE
Sbjct: 179 KFYKPKQQEKGAPDDDLDEYDYGDEDEEEDDEPPW 213
Score = 32.3 bits (74), Expect = 0.11
Identities = 9/35 (25%), Positives = 19/35 (54%)
Query: 154 KKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEE 188
K K K+++K +++ +E + G+E+EE
Sbjct: 179 KFYKPKQQEKGAPDDDLDEYDYGDEDEEEDDEPPW 213
Score = 28.5 bits (64), Expect = 2.4
Identities = 13/40 (32%), Positives = 15/40 (37%)
Query: 167 EEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEE 206
EEE+ E G E E E E EEE E+
Sbjct: 115 EEEDAAAPTCSCCPVCSVNMTECTGPEPEPEPEPEEEPEK 154
Score = 28.1 bits (63), Expect = 3.1
Identities = 16/82 (19%), Positives = 30/82 (36%), Gaps = 26/82 (31%)
Query: 156 KKKKKKKKEEEEEEEEEEEGGEEEEEGGGG--------------------------EEEG 189
+ E E E E E E++ G G +E+G
Sbjct: 130 CSVNMTECTGPEPEPEPEPEEEPEKKSGMGPLLLVLAVALIGGGAYYYFKFYKPKQQEKG 189
Query: 190 GGEEEEEEEEEEEEEEEEEEEE 211
+++ +E + +E+EEE++E
Sbjct: 190 APDDDLDEYDYGDEDEEEDDEP 211
Score = 26.5 bits (59), Expect = 8.9
Identities = 10/29 (34%), Positives = 12/29 (41%)
Query: 183 GGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
GGE E + E + E E EEE
Sbjct: 23 YGGEPEPEVPQTEATDPSEVVVETVTEEE 51
>gnl|CDD|235668 PRK06007, fliF, flagellar MS-ring protein; Reviewed.
Length = 542
Score = 33.3 bits (77), Expect = 0.084
Identities = 25/125 (20%), Positives = 42/125 (33%), Gaps = 19/125 (15%)
Query: 85 VITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVKLPKMLE 144
V+ VP F++ + + M ++ A L L
Sbjct: 413 VVNVP--FDEEAEEEAAELPFWQQPWFMDLIKLAAGALLILIL----------------- 453
Query: 145 PLLVLTLRKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEE 204
VL R + +++ EEE EE +EE + EEE+ EEE + E
Sbjct: 454 IFFVLRPRLRPLLPEEELAEEEAAAEEAALEEDEEAALEVELSDDEELEEEKAEEELKYE 513
Query: 205 EEEEE 209
+ +
Sbjct: 514 DLLKR 518
>gnl|CDD|185628 PTZ00449, PTZ00449, 104 kDa microneme/rhoptry antigen; Provisional.
Length = 943
Score = 33.5 bits (76), Expect = 0.086
Identities = 21/61 (34%), Positives = 34/61 (55%)
Query: 151 LRKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEE 210
++K KK KKK EEE+ ++ + E E G + G++E EE E E+ +E +E +
Sbjct: 485 IKKLIKKSKKKLAPIEEEDSDKHDEPPEGPEASGLPPKAPGDKEGEEGEHEDSKESDEPK 544
Query: 211 E 211
E
Sbjct: 545 E 545
>gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional.
Length = 1388
Score = 33.5 bits (77), Expect = 0.089
Identities = 14/66 (21%), Positives = 28/66 (42%)
Query: 116 NEPTAAALAYGLDKNLKGERNVKLPKMLEPLLVLTLRKKKKKKKKKKKEEEEEEEEEEEG 175
E + AAL K R K ++ + ++ +KKK + E++++ E
Sbjct: 1314 LEGSLAALKKKKKSEKKTARKKKSKTRVKQASASQSSRLLRRPRKKKSDSSSEDDDDSEV 1373
Query: 176 GEEEEE 181
+ E+E
Sbjct: 1374 DDSEDE 1379
Score = 30.0 bits (68), Expect = 0.94
Identities = 13/72 (18%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
Query: 145 PLLVLTLRKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGG-----EEEGGGEEEEEEEE 199
L KKKKK +KK +++ + + + ++ E++++ E
Sbjct: 1313 RLEGSLAALKKKKKSEKKTARKKKSKTRVKQASASQSSRLLRRPRKKKSDSSSEDDDDSE 1372
Query: 200 EEEEEEEEEEEE 211
++ E+E++E++
Sbjct: 1373 VDDSEDEDDEDD 1384
>gnl|CDD|223079 PHA03419, PHA03419, E4 protein; Provisional.
Length = 200
Score = 32.6 bits (74), Expect = 0.099
Identities = 15/42 (35%), Positives = 28/42 (66%)
Query: 160 KKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEE 201
KKK+++++E E+ +GGE+ ++G + EG G E E+ E+
Sbjct: 93 KKKEKKKKETEKPAQGGEKPDQGPEAKGEGEGHEPEDPPPED 134
Score = 29.9 bits (67), Expect = 0.73
Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 17/69 (24%)
Query: 152 RKKKKKKKKKKKEEE--------EEEEEEEEGGEEEE---------EGGGGEEEGGGEEE 194
+KK+KKKK+ +K + E + E EG E E+ GG GE EGG
Sbjct: 93 KKKEKKKKETEKPAQGGEKPDQGPEAKGEGEGHEPEDPPPEDTPPPPGGEGEVEGGPSPG 152
Query: 195 EEEEEEEEE 203
++E
Sbjct: 153 PGPGPLDQE 161
>gnl|CDD|153040 pfam12606, RELT, Tumour necrosis factor receptor superfamily member
19. This family of proteins is found in bacteria and
eukaryotes. Proteins in this family are typically
between 49 and 288 amino acids in length. There are two
completely conserved residues (K and Y) that may be
functionally important. The members of tumor necrosis
factor receptor (TNFR) superfamily have been designated
as the "guardians of the immune system" due to their
roles in immune cell proliferation, differentiation,
activation, and death (apoptosis). The messenger RNA of
RELT is especially abundant in hematologic tissues such
as spleen, lymph node, and peripheral blood leukocytes
as well as in leukemias and lymphomas. RELT is able to
activate the NF-kappaB pathway and selectively binds
tumor necrosis factor receptor-associated factor 1.
Length = 50
Score = 29.9 bits (68), Expect = 0.10
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 146 LLVLTLRKKKKKKKKKKKEEEEEEEEEEEGGEE 178
LL+ TL KKK + E+E EE++EE EE
Sbjct: 18 LLICTLLKKKGYRCTVDPLEDEPEEKKEEEKEE 50
>gnl|CDD|221490 pfam12253, CAF1A, Chromatin assembly factor 1 subunit A. The CAF-1
or chromatin assembly factor-1 consists of three
subunits, and this is the first, or A. The A domain is
uniquely required for the progression of S phase in
mouse cells, independent of its ability to promote
histone deposition but dependent on its ability to
interact with HP1 - heterochromatin protein 1-rich
heterochromatin domains next to centromeres that are
crucial for chromosome segregation during mitosis. This
HP1-CAF-1 interaction module functions as a built-in
replication control for heterochromatin, which, like a
control barrier, has an impact on S-phase progression in
addition to DNA-based checkpoints.
Length = 76
Score = 30.7 bits (70), Expect = 0.11
Identities = 12/26 (46%), Positives = 21/26 (80%)
Query: 186 EEEGGGEEEEEEEEEEEEEEEEEEEE 211
EEE GE+ E E+EE+EEE+++++ +
Sbjct: 49 EEEEEGEDLESEDEEDEEEDDDDDMD 74
Score = 28.3 bits (64), Expect = 0.70
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 10/40 (25%)
Query: 166 EEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEE 205
+ E EEEEEG + E E +EE+EEE+++++ +
Sbjct: 45 DAEWEEEEEGEDLESE----------DEEDEEEDDDDDMD 74
>gnl|CDD|235548 PRK05657, PRK05657, RNA polymerase sigma factor RpoS; Validated.
Length = 325
Score = 32.6 bits (75), Expect = 0.11
Identities = 12/46 (26%), Positives = 20/46 (43%)
Query: 161 KKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEE 206
K + E+ + +E G E +E EEE + EEE + +
Sbjct: 4 KVHDLNEDADFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQ 49
Score = 28.4 bits (64), Expect = 2.9
Identities = 10/46 (21%), Positives = 18/46 (39%)
Query: 166 EEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
+ + E + +E G +E EEE + + EEE +
Sbjct: 2 TLKVHDLNEDADFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGA 47
Score = 27.6 bits (62), Expect = 4.3
Identities = 9/46 (19%), Positives = 18/46 (39%)
Query: 165 EEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEE 210
+ + E+ +E +E+ EEE + + EEE +
Sbjct: 2 TLKVHDLNEDADFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGA 47
>gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional.
Length = 1560
Score = 32.8 bits (75), Expect = 0.11
Identities = 10/45 (22%), Positives = 19/45 (42%)
Query: 165 EEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEE 209
E +E ++ +EG + E GG + E ++E E +
Sbjct: 880 ELKENKDSKEGDADAEVAEVDAAPGGAVDHEPPVAKQEGNAEGGD 924
Score = 29.4 bits (66), Expect = 1.9
Identities = 11/43 (25%), Positives = 19/43 (44%)
Query: 153 KKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEE 195
K+ K K+ + E E + GG + E ++EG E +
Sbjct: 882 KENKDSKEGDADAEVAEVDAAPGGAVDHEPPVAKQEGNAEGGD 924
Score = 28.2 bits (63), Expect = 3.6
Identities = 9/43 (20%), Positives = 19/43 (44%)
Query: 160 KKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEE 202
K+ K+ +E + + E + GG + E ++E E +
Sbjct: 882 KENKDSKEGDADAEVAEVDAAPGGAVDHEPPVAKQEGNAEGGD 924
Score = 27.8 bits (62), Expect = 5.3
Identities = 8/45 (17%), Positives = 17/45 (37%), Gaps = 2/45 (4%)
Query: 159 KKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEE 203
K+ K +E + + E + GG + ++E E +
Sbjct: 882 KENKDSKEGDADAEVAEVDAAP--GGAVDHEPPVAKQEGNAEGGD 924
>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein
TolA; Provisional.
Length = 387
Score = 32.5 bits (74), Expect = 0.12
Identities = 14/57 (24%), Positives = 36/57 (63%)
Query: 154 KKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEE 210
K+ ++++KKKE+++ EE +++ E+E E+E +E++++ EE ++ ++
Sbjct: 75 KRAEEQRKKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAALKQ 131
Score = 30.2 bits (68), Expect = 0.74
Identities = 12/59 (20%), Positives = 38/59 (64%)
Query: 153 KKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
K+ ++++KKK++++ EE ++++ E+E +E +E++++ EE ++ ++++
Sbjct: 75 KRAEEQRKKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAALKQKQ 133
Score = 27.1 bits (60), Expect = 7.1
Identities = 13/58 (22%), Positives = 33/58 (56%)
Query: 151 LRKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEE 208
RKKK++++ ++ ++++ E+E E+E E++ EE ++ ++++ EE
Sbjct: 80 QRKKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAALKQKQAEEA 137
Score = 26.7 bits (59), Expect = 10.0
Identities = 15/62 (24%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 152 RKKKKKKKKKKKEEEE----EEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEE 207
R ++++KKK++++ EE + E+E + E+E +E+ EE ++ ++++ E
Sbjct: 76 RAEEQRKKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAALKQKQAE 135
Query: 208 EE 209
E
Sbjct: 136 EA 137
>gnl|CDD|220785 pfam10498, IFT57, Intra-flagellar transport protein 57. Eukaryotic
cilia and flagella are specialised organelles found at
the periphery of cells of diverse organisms.
Intra-flagellar transport (IFT) is required for the
assembly and maintenance of eukaryotic cilia and
flagella, and consists of the bidirectional movement of
large protein particles between the base and the distal
tip of the organelle. IFT particles contain multiple
copies of two distinct protein complexes, A and B, which
contain at least 6 and 11 protein subunits. IFT57 is
part of complex B but is not, however, required for the
core subunits to stay associated. This protein is known
as Huntington-interacting protein-1 in humans.
Length = 355
Score = 32.8 bits (75), Expect = 0.12
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 6/66 (9%)
Query: 146 LLVLTLRKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEE 205
L L KKK K+ + EE+EEE +E+ + E EE EEE E EE ++
Sbjct: 106 LDDLADAALKKKGFSFKRPKYPNEEDEEENVDED------DAEIILEEVEEEVEIEEVDD 159
Query: 206 EEEEEE 211
+E +E
Sbjct: 160 DEGTQE 165
>gnl|CDD|215914 pfam00428, Ribosomal_60s, 60s Acidic ribosomal protein. This
family includes archaebacterial L12, eukaryotic P0, P1
and P2.
Length = 88
Score = 30.7 bits (70), Expect = 0.13
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 188 EGGGEEEEEEEEEEEEEEEEEEE 210
EEE++EEEEEEEE++
Sbjct: 59 AAAAAAAAEEEKKEEEEEEEEDD 81
Score = 30.7 bits (70), Expect = 0.14
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 189 GGGEEEEEEEEEEEEEEEEEEEE 211
EEE++EEEEEEEE++
Sbjct: 59 AAAAAAAAEEEKKEEEEEEEEDD 81
Score = 30.3 bits (69), Expect = 0.18
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 184 GGEEEGGGEEEEEEEEEEEEEEEEEE 209
EEE++EEEEEEEE++
Sbjct: 56 AAAAAAAAAAAEEEKKEEEEEEEEDD 81
Score = 29.9 bits (68), Expect = 0.29
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 183 GGGEEEGGGEEEEEEEEEEEEEEEEE 208
EEE++EEEEEEEE++
Sbjct: 56 AAAAAAAAAAAEEEKKEEEEEEEEDD 81
Score = 29.5 bits (67), Expect = 0.33
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 189 GGGEEEEEEEEEEEEEEEEEEEE 211
EEE++EEEEEEEE+
Sbjct: 58 AAAAAAAAAEEEKKEEEEEEEED 80
Score = 28.4 bits (64), Expect = 0.87
Identities = 10/22 (45%), Positives = 17/22 (77%)
Query: 155 KKKKKKKKKEEEEEEEEEEEGG 176
+++KK+EEEEEEE+++ G
Sbjct: 64 AAAEEEKKEEEEEEEEDDDMGF 85
Score = 28.4 bits (64), Expect = 0.92
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 182 GGGGEEEGGGEEEEEEEEEEEEEEEE 207
EEE++EEEEEEEE++
Sbjct: 56 AAAAAAAAAAAEEEKKEEEEEEEEDD 81
Score = 28.0 bits (63), Expect = 1.0
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 189 GGGEEEEEEEEEEEEEEEEEEEE 211
EEE++EEEEEEEE
Sbjct: 57 AAAAAAAAAAEEEKKEEEEEEEE 79
Score = 27.2 bits (61), Expect = 1.9
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 189 GGGEEEEEEEEEEEEEEEEEEEE 211
EEE++EEEEEEE
Sbjct: 56 AAAAAAAAAAAEEEKKEEEEEEE 78
Score = 26.8 bits (60), Expect = 2.9
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 153 KKKKKKKKKKKEEEEEEEEEEE 174
+++K+EEEEEEEE++
Sbjct: 60 AAAAAAAEEEKKEEEEEEEEDD 81
Score = 26.0 bits (58), Expect = 6.4
Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Query: 157 KKKKKKKEEEEEEEEEEEGGEEEEEGGGG 185
EEE++EEEEEE EE+++ G G
Sbjct: 60 AAAAAAAEEEKKEEEEEE--EEDDDMGFG 86
>gnl|CDD|218747 pfam05786, Cnd2, Condensin complex subunit 2. This family consists
of several Barren protein homologues from several
eukaryotic organisms. In Drosophila Barren (barr) is
required for sister-chromatid segregation in mitosis.
barr encodes a novel protein that is present in
proliferating cells and has homologues in yeast and
human. Mitotic defects in barr embryos become apparent
during cycle 16, resulting in a loss of PNS and CNS
neurons. Centromeres move apart at the
metaphase-anaphase transition and Cyclin B is degraded,
but sister chromatids remain connected, resulting in
chromatin bridging. Barren protein localises to
chromatin throughout mitosis. Colocalisation and
biochemical experiments indicate that Barren associates
with Topoisomerase II throughout mitosis and alters the
activity of Topoisomerase II. It has been suggested that
this association is required for proper chromosomal
segregation by facilitating the decatenation of
chromatids at anaphase. This family forms one of the
three non-structural maintenance of chromosomes (SMC)
subunits of the mitotic condensation complex along with
Cnd1 and Cnd3.
Length = 719
Score = 32.8 bits (75), Expect = 0.14
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 159 KKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGE 192
KE E E ++G +++EEG GEE+G +
Sbjct: 151 DSDNKEAPETGREGDDGEDDDEEGSDGEEDGAKK 184
>gnl|CDD|240331 PTZ00254, PTZ00254, 40S ribosomal protein SA; Provisional.
Length = 249
Score = 32.3 bits (74), Expect = 0.14
Identities = 12/42 (28%), Positives = 15/42 (35%)
Query: 163 KEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEE 204
++ EE EE+EE E EE EE E
Sbjct: 205 RDPEEAEEKEEAAAETAGVEDAAAAAAEAEEGEEWVAAANNE 246
Score = 32.0 bits (73), Expect = 0.18
Identities = 12/41 (29%), Positives = 14/41 (34%)
Query: 165 EEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEE 205
+ EE EE+EE E EE EE E
Sbjct: 206 DPEEAEEKEEAAAETAGVEDAAAAAAEAEEGEEWVAAANNE 246
>gnl|CDD|203043 pfam04546, Sigma70_ner, Sigma-70, non-essential region. The domain
is found in the primary vegetative sigma factor. The
function of this domain is unclear and can be removed
without loss of function.
Length = 211
Score = 32.2 bits (74), Expect = 0.14
Identities = 8/41 (19%), Positives = 20/41 (48%)
Query: 171 EEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
+ E + E++++++E+E+E++EEE
Sbjct: 31 DPNAAAAAATAAAIESELDEEDLEDDDDDDEDEDEDDEEEA 71
Score = 31.8 bits (73), Expect = 0.18
Identities = 10/47 (21%), Positives = 20/47 (42%)
Query: 164 EEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEE 210
E +E +++ E+E+E++EEE + + EE
Sbjct: 33 NAAAAAATAAAIESELDEEDLEDDDDDDEDEDEDDEEEADLGPDPEE 79
Score = 31.0 bits (71), Expect = 0.29
Identities = 11/47 (23%), Positives = 21/47 (44%)
Query: 165 EEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
E E + E++ +E+E+E++EEE + + EE
Sbjct: 33 NAAAAAATAAAIESELDEEDLEDDDDDDEDEDEDDEEEADLGPDPEE 79
Score = 31.0 bits (71), Expect = 0.30
Identities = 10/48 (20%), Positives = 20/48 (41%)
Query: 164 EEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
+ E E E+ ++E+E+E++EEE + + E
Sbjct: 31 DPNAAAAAATAAAIESELDEEDLEDDDDDDEDEDEDDEEEADLGPDPE 78
Score = 26.4 bits (59), Expect = 9.2
Identities = 11/35 (31%), Positives = 21/35 (60%)
Query: 162 KKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEE 196
+ E +EE+ E+++ +E+E+ EE G + EE
Sbjct: 45 ESELDEEDLEDDDDDDEDEDEDDEEEADLGPDPEE 79
Score = 26.4 bits (59), Expect = 9.8
Identities = 7/25 (28%), Positives = 19/25 (76%)
Query: 159 KKKKKEEEEEEEEEEEGGEEEEEGG 183
++ +++++++E+E+E EEE + G
Sbjct: 50 EEDLEDDDDDDEDEDEDDEEEADLG 74
>gnl|CDD|217940 pfam04177, TAP42, TAP42-like family. The TOR signalling pathway
activates a cell-growth program in response to
nutrients. TIP41 (pfam04176) interacts with TAP42 and
negatively regulates the TOR signaling pathway.
Length = 335
Score = 32.3 bits (74), Expect = 0.14
Identities = 15/40 (37%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 173 EEGGEEE-EEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
+E E+E + GG + G EEEE++E++EE+++EE
Sbjct: 281 DEYLEQEMKRGGVPQGGGEAAASAEEEEDDEDDEEDDDEE 320
>gnl|CDD|219461 pfam07543, PGA2, Protein trafficking PGA2. A Saccharomyces
cerevisiae member of this family (PGA2) is an ER protein
which has been implicated in protein trafficking.
Length = 139
Score = 31.3 bits (71), Expect = 0.15
Identities = 18/56 (32%), Positives = 30/56 (53%)
Query: 151 LRKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEE 206
L K ++K+ +K+ E EE E++ GG G GEE+ ++EE+EE+
Sbjct: 37 LGAKAQEKEHEKERAEREEAREKKAKISPNALRGGATAGHGEEDTDDEEDEEDFAT 92
Score = 29.8 bits (67), Expect = 0.56
Identities = 18/58 (31%), Positives = 29/58 (50%)
Query: 154 KKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
K K ++KE E+E E EE E++ + GG EE+ ++EE+EE+
Sbjct: 35 IKLGAKAQEKEHEKERAEREEAREKKAKISPNALRGGATAGHGEEDTDDEEDEEDFAT 92
Score = 29.4 bits (66), Expect = 0.79
Identities = 16/64 (25%), Positives = 32/64 (50%)
Query: 142 MLEPLLVLTLRKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEE 201
++ P + K ++K+ +K++ E EE E++ GG G E+ ++EE+EE
Sbjct: 29 LIRPYFIKLGAKAQEKEHEKERAEREEAREKKAKISPNALRGGATAGHGEEDTDDEEDEE 88
Query: 202 EEEE 205
+
Sbjct: 89 DFAT 92
>gnl|CDD|202833 pfam03962, Mnd1, Mnd1 family. This family of proteins includes
MND1 from S. cerevisiae. The mnd1 protein forms a
complex with hop2 to promote homologous chromosome
pairing and meiotic double-strand break repair.
Length = 188
Score = 31.8 bits (73), Expect = 0.17
Identities = 17/57 (29%), Positives = 29/57 (50%)
Query: 154 KKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEE 210
+ K K + E+ ++E EE + E + + + G EE EE E EE ++ E+E
Sbjct: 62 QALNKLKTRLEKLKKELEELKQRIAELQAQIEKLKKGREETEERTELLEELKQLEKE 118
Score = 30.3 bits (69), Expect = 0.46
Identities = 18/59 (30%), Positives = 27/59 (45%)
Query: 153 KKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
+ K K + E+ ++E EE E E+ G EE EE E EE ++ E+E
Sbjct: 60 PSQALNKLKTRLEKLKKELEELKQRIAELQAQIEKLKKGREETEERTELLEELKQLEKE 118
Score = 28.4 bits (64), Expect = 2.3
Identities = 17/59 (28%), Positives = 31/59 (52%)
Query: 152 RKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEE 210
K + +K KK+ EE ++ E + E+ + G E E E EE ++ E+E ++ + E
Sbjct: 67 LKTRLEKLKKELEELKQRIAELQAQIEKLKKGREETEERTELLEELKQLEKELKKLKAE 125
>gnl|CDD|148682 pfam07222, PBP_sp32, Proacrosin binding protein sp32. This family
consists of several mammalian specific proacrosin
binding protein sp32 sequences. sp32 is a sperm specific
protein which is known to bind with with 55- and 53-kDa
proacrosins and the 49-kDa acrosin intermediate. The
exact function of sp32 is unclear, it is thought however
that the binding of sp32 to proacrosin may be involved
in packaging the acrosin zymogen into the acrosomal
matrix.
Length = 243
Score = 31.9 bits (72), Expect = 0.18
Identities = 14/27 (51%), Positives = 21/27 (77%)
Query: 156 KKKKKKKKEEEEEEEEEEEGGEEEEEG 182
K ++K+ +EE+EEEE EEE +EE +G
Sbjct: 214 KTEEKQPQEEQEEEEVEEEAKQEEGQG 240
Score = 31.6 bits (71), Expect = 0.20
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 10/59 (16%)
Query: 152 RKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEE 210
K K+++ K +E +E + EE +EE+ EEEE EEE ++EE + ++
Sbjct: 195 PKPKQEQLLSKLQEYLQEHKTEEKQPQEEQ----------EEEEVEEEAKQEEGQGTDD 243
Score = 30.0 bits (67), Expect = 0.70
Identities = 18/60 (30%), Positives = 31/60 (51%)
Query: 149 LTLRKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEE 208
L+L + K K K+E+ + +E E + E +EE EE EEE ++EE + ++
Sbjct: 184 LSLGGSVQVKAPKPKQEQLLSKLQEYLQEHKTEEKQPQEEQEEEEVEEEAKQEEGQGTDD 243
Score = 28.9 bits (64), Expect = 1.8
Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
Query: 138 KLPKMLEPLLVLTLRKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEE 197
+L +E LL +L + K K ++E+ + + +E + E +EE+E
Sbjct: 171 RLHNNVEELLQSSLSLGGSVQVKAPKPKQEQLLSKLQEYLQEHK-----TEEKQPQEEQE 225
Query: 198 EEEEEEEEEEEEEE 211
EEE EEE ++EE +
Sbjct: 226 EEEVEEEAKQEEGQ 239
>gnl|CDD|219924 pfam08597, eIF3_subunit, Translation initiation factor eIF3
subunit. This is a family of proteins which are
subunits of the eukaryotic translation initiation factor
3 (eIF3). In yeast it is called Hcr1. The Saccharomyces
cerevisiae protein eIF3j (HCR1) has been shown to be
required for processing of 20S pre-rRNA and binds to 18S
rRNA and eIF3 subunits Rpg1p and Prt1p.
Length = 242
Score = 31.9 bits (73), Expect = 0.18
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 10/59 (16%)
Query: 153 KKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
K KK K K +E+E+ + E+EE G E E E+ E+E E+ + +EE
Sbjct: 57 KAKKALKAKIEEKEKAKREKEEKGLRELE----------EDTPEDELAEKLRLRKLQEE 105
Score = 30.0 bits (68), Expect = 0.69
Identities = 19/55 (34%), Positives = 29/55 (52%)
Query: 153 KKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEE 207
K K K KK + + EE+E+ E+EE+G EE E+E E+ + +EE
Sbjct: 51 KVAAKAKAKKALKAKIEEKEKAKREKEEKGLRELEEDTPEDELAEKLRLRKLQEE 105
Score = 29.2 bits (66), Expect = 1.4
Identities = 19/57 (33%), Positives = 29/57 (50%)
Query: 152 RKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEE 208
+ K K K KK + + EE+E+ E+EE G E E E+E E+ + +EE
Sbjct: 49 KAKVAAKAKAKKALKAKIEEKEKAKREKEEKGLRELEEDTPEDELAEKLRLRKLQEE 105
Score = 28.5 bits (64), Expect = 2.1
Identities = 17/57 (29%), Positives = 27/57 (47%)
Query: 153 KKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEE 209
K K K K K+ + + EE+E + E+E G E E+E E+ + +EE
Sbjct: 49 KAKVAAKAKAKKALKAKIEEKEKAKREKEEKGLRELEEDTPEDELAEKLRLRKLQEE 105
Score = 28.5 bits (64), Expect = 2.1
Identities = 17/48 (35%), Positives = 27/48 (56%)
Query: 164 EEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
EEE+EE+EEE+ + + EE+E+ + E+EE+ E EE
Sbjct: 39 EEEDEEKEEEKAKVAAKAKAKKALKAKIEEKEKAKREKEEKGLRELEE 86
Score = 26.5 bits (59), Expect = 9.9
Identities = 14/59 (23%), Positives = 27/59 (45%)
Query: 152 RKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEE 210
+K K K K ++ + + EE+ + E+ G E + E+E E+ + +EE
Sbjct: 47 EEKAKVAAKAKAKKALKAKIEEKEKAKREKEEKGLRELEEDTPEDELAEKLRLRKLQEE 105
>gnl|CDD|214395 CHL00204, ycf1, Ycf1; Provisional.
Length = 1832
Score = 32.4 bits (74), Expect = 0.18
Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 12/64 (18%)
Query: 157 KKKKKKKEEEEEEEEEEEGGEEEE-----EGGGGEEEGGGEEE-------EEEEEEEEEE 204
KK K+ E EE E EEE E E +G E+EG EE+ EE E+ ++ +
Sbjct: 240 KKLKETSETEERVESEEETDVEIETASETKGTKQEQEGSTEEDPSPSLFSEEREDPDKID 299
Query: 205 EEEE 208
E EE
Sbjct: 300 ETEE 303
Score = 32.0 bits (73), Expect = 0.25
Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 10/64 (15%)
Query: 156 KKKKKKKKEEEEEEEEEEEGGEEE---EEGGGGEEEGGGEEEE-------EEEEEEEEEE 205
KK K+ + EE E EEE E E E G +E+ G EE+ EE E+ ++ +
Sbjct: 240 KKLKETSETEERVESEEETDVEIETASETKGTKQEQEGSTEEDPSPSLFSEEREDPDKID 299
Query: 206 EEEE 209
E EE
Sbjct: 300 ETEE 303
Score = 30.5 bits (69), Expect = 0.68
Identities = 14/22 (63%), Positives = 18/22 (81%)
Query: 153 KKKKKKKKKKKEEEEEEEEEEE 174
K KKKKKK+KK+EEE + EE+
Sbjct: 744 KTKKKKKKEKKKEEEYKREEKA 765
Score = 30.5 bits (69), Expect = 0.85
Identities = 14/22 (63%), Positives = 18/22 (81%)
Query: 152 RKKKKKKKKKKKEEEEEEEEEE 173
+ KKKKKK+KKKEEE + EE+
Sbjct: 744 KTKKKKKKEKKKEEEYKREEKA 765
Score = 30.1 bits (68), Expect = 0.91
Identities = 15/34 (44%), Positives = 24/34 (70%)
Query: 141 KMLEPLLVLTLRKKKKKKKKKKKEEEEEEEEEEE 174
K E + ++ +K KKKKKK+K++EEE + EE+
Sbjct: 731 KDAEFKISDSVEEKTKKKKKKEKKKEEEYKREEK 764
>gnl|CDD|183610 PRK12585, PRK12585, putative monovalent cation/H+ antiporter
subunit G; Reviewed.
Length = 197
Score = 31.6 bits (71), Expect = 0.19
Identities = 22/57 (38%), Positives = 33/57 (57%)
Query: 154 KKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEE 210
KKKK ++E+ E+ +E E EE E EE+ E++EE+E E EE+ EE+
Sbjct: 116 KKKKSLIIRQEQIEKARQEREELEERMEWERREEKIDEREDQEEQEREREEQTIEEQ 172
Score = 30.0 bits (67), Expect = 0.70
Identities = 20/63 (31%), Positives = 37/63 (58%)
Query: 149 LTLRKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEE 208
L +R+++ +K ++++EE EE E E E+ +E EE+ EE+ EE+ ++ E E
Sbjct: 121 LIIRQEQIEKARQEREELEERMEWERREEKIDEREDQEEQEREREEQTIEEQSDDSEHEI 180
Query: 209 EEE 211
E+
Sbjct: 181 IEQ 183
Score = 28.9 bits (64), Expect = 1.6
Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Query: 151 LRKKK----KKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEE 206
++KKK ++++ +K +E EE EE E EE E+ +E E EE+ EE+ +
Sbjct: 115 IKKKKSLIIRQEQIEKARQEREELEERMEWERREEKIDEREDQEEQEREREEQTIEEQSD 174
Query: 207 EEEEE 211
+ E E
Sbjct: 175 DSEHE 179
Score = 28.1 bits (62), Expect = 2.4
Identities = 15/53 (28%), Positives = 33/53 (62%)
Query: 154 KKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEE 206
+++++K ++E++EE+E E E EE+ E E ++E E E ++++ E+
Sbjct: 145 ERREEKIDEREDQEEQEREREEQTIEEQSDDSEHEIIEQDESETESDDDKTEK 197
Score = 27.7 bits (61), Expect = 3.3
Identities = 16/52 (30%), Positives = 31/52 (59%)
Query: 160 KKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
++++E+ +E E++EE E EE E+ E E E++E E E ++++ E
Sbjct: 145 ERREEKIDEREDQEEQEREREEQTIEEQSDDSEHEIIEQDESETESDDDKTE 196
>gnl|CDD|223649 COG0576, GrpE, Molecular chaperone GrpE (heat shock protein)
[Posttranslational modification, protein turnover,
chaperones].
Length = 193
Score = 31.5 bits (72), Expect = 0.19
Identities = 22/57 (38%), Positives = 33/57 (57%)
Query: 154 KKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEE 210
K++K ++ + EE EE E+ EEE E EEE EEE++E E E + EE ++
Sbjct: 1 MSDKEQKTEEPDAEETEEAEKSEEEEAEEEEPEEENELEEEQQEIAELEAQLEELKD 57
Score = 30.8 bits (70), Expect = 0.31
Identities = 22/57 (38%), Positives = 31/57 (54%)
Query: 155 KKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
K++K +E + EE EE E EEEE EE EEE++E E E + EE ++
Sbjct: 1 MSDKEQKTEEPDAEETEEAEKSEEEEAEEEEPEEENELEEEQQEIAELEAQLEELKD 57
Score = 29.6 bits (67), Expect = 0.85
Identities = 20/57 (35%), Positives = 31/57 (54%)
Query: 153 KKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEE 209
K++K ++ + EE EE E+ EE EE EE EE++E E E + EE ++
Sbjct: 1 MSDKEQKTEEPDAEETEEAEKSEEEEAEEEEPEEENELEEEQQEIAELEAQLEELKD 57
>gnl|CDD|233870 TIGR02442, Cob-chelat-sub, cobaltochelatase subunit.
Cobaltochelatase is responsible for the insertion of
cobalt into the corrin ring of coenzyme B12 during its
biosynthesis. Two versions have been well described.
CbiK/CbiX is a monomeric, anaerobic version which acts
early in the biosynthesis (pfam06180). CobNST is a
trimeric, ATP-dependent, aerobic version which acts late
in the biosynthesis (TIGR02257/TIGR01650/TIGR01651). A
number of genomes (actinobacteria, cyanobacteria,
betaproteobacteria and pseudomonads) which apparently
biosynthesize B12, encode a cobN gene but are
demonstrably lacking cobS and cobT. These genomes do,
however contain a homolog (modelled here) of the
magnesium chelatase subunits BchI/BchD family. Aside
from the cyanobacteria (which have a separate magnesium
chelatase trimer), these species do not make chlorins,
so do not have any use for a magnesium chelatase.
Furthermore, in nearly all cases the members of this
family are proximal to either CobN itself or other genes
involved in cobalt transport or B12 biosynthesis.
Length = 633
Score = 32.0 bits (73), Expect = 0.19
Identities = 18/75 (24%), Positives = 35/75 (46%), Gaps = 10/75 (13%)
Query: 146 LLVLTLRKKKK----------KKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEE 195
LVL R+++K K ++K EE + E+ + GE++ E G ++
Sbjct: 302 ELVLPHRRRRKPFEQPQGKDEKDLEEKPEEPGPDPEKPDEGEDDAEQSGPRGHPTPGNDD 361
Query: 196 EEEEEEEEEEEEEEE 210
E+E + +EE + +
Sbjct: 362 EKEPDPQEEADGQGS 376
>gnl|CDD|184885 PRK14891, PRK14891, 50S ribosomal protein L24e/unknown domain
fusion protein; Provisional.
Length = 131
Score = 31.1 bits (70), Expect = 0.21
Identities = 17/48 (35%), Positives = 25/48 (52%)
Query: 164 EEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
E+ +E E + E +EE E +E + E EE +EEE+EE E
Sbjct: 83 EDADEAAEADAADEADEEEETDEAVDETADEADAEAEEADEEEDEEAE 130
Score = 29.9 bits (67), Expect = 0.42
Identities = 15/48 (31%), Positives = 24/48 (50%)
Query: 164 EEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
E + +E+ +E E + EEE E +E +E + E EE +EE
Sbjct: 77 EAADADEDADEAAEADAADEADEEEETDEAVDETADEADAEAEEADEE 124
Score = 29.5 bits (66), Expect = 0.58
Identities = 17/47 (36%), Positives = 25/47 (53%)
Query: 164 EEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEE 210
+E E + + +EEEE +E E + E EE +EEE+EE E
Sbjct: 85 ADEAAEADAADEADEEEETDEAVDETADEADAEAEEADEEEDEEAEA 131
Score = 29.1 bits (65), Expect = 0.76
Identities = 15/47 (31%), Positives = 26/47 (55%)
Query: 164 EEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEE 210
+E+ +E E + +E +E +E +E + E EE +EEE+EE
Sbjct: 82 DEDADEAAEADAADEADEEEETDEAVDETADEADAEAEEADEEEDEE 128
Score = 27.6 bits (61), Expect = 2.4
Identities = 15/60 (25%), Positives = 25/60 (41%)
Query: 152 RKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
+K E EE E + E+ +E + +EEEE +E +E +E + E
Sbjct: 58 AEKGPAAAATAAAEAAEEAEAADADEDADEAAEADAADEADEEEETDEAVDETADEADAE 117
>gnl|CDD|202096 pfam02029, Caldesmon, Caldesmon.
Length = 431
Score = 31.9 bits (72), Expect = 0.21
Identities = 22/51 (43%), Positives = 29/51 (56%)
Query: 161 KKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
+EEE+EE EE EE EG E+ + EE ++EE+E E EEEE
Sbjct: 110 TVEEEEKEESREEREEVEETEGVTKSEQKNDWRDAEECQKEEKEPEPEEEE 160
Score = 30.0 bits (67), Expect = 0.89
Identities = 21/52 (40%), Positives = 31/52 (59%)
Query: 160 KKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
++EE+EE EE E EE E E++ + EE ++EE+E E EEEE+
Sbjct: 110 TVEEEEKEESREEREEVEETEGVTKSEQKNDWRDAEECQKEEKEPEPEEEEK 161
Score = 27.7 bits (61), Expect = 4.4
Identities = 17/59 (28%), Positives = 31/59 (52%)
Query: 152 RKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEE 210
+ ++++K++ EE EE EE G + E + ++EE+E E EEEE+ +
Sbjct: 107 ENETVEEEEKEESREEREEVEETEGVTKSEQKNDWRDAEECQKEEKEPEPEEEEKPKRG 165
>gnl|CDD|114603 pfam05887, Trypan_PARP, Procyclic acidic repetitive protein (PARP).
This family consists of several Trypanosoma brucei
procyclic acidic repetitive protein (PARP) like
sequences. The procyclic acidic repetitive protein
(parp) genes of Trypanosoma brucei encode a small family
of abundant surface proteins whose expression is
restricted to the procyclic form of the parasite. They
are found at two unlinked loci, parpA and parpB;
transcription of both loci is developmentally regulated.
Length = 145
Score = 31.1 bits (69), Expect = 0.24
Identities = 28/47 (59%), Positives = 28/47 (59%)
Query: 164 EEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEE 210
EEEEE E EEEG EE E GEEE EE EEE E E E E E E
Sbjct: 65 EEEEEPEPEEEGEEEPEPEEEGEEEPEPEETGEEEPEPEPEPEPEPE 111
Score = 29.5 bits (65), Expect = 0.78
Identities = 26/64 (40%), Positives = 32/64 (50%)
Query: 148 VLTLRKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEE 207
+T K K +K K ++ + + EEEE EEEG E E EEE EEE E EE
Sbjct: 35 GITKGGKGKGEKGTKVGADDTNGTDPDDEPEEEEEPEPEEEGEEEPEPEEEGEEEPEPEE 94
Query: 208 EEEE 211
EE
Sbjct: 95 TGEE 98
Score = 29.2 bits (64), Expect = 1.0
Identities = 25/47 (53%), Positives = 27/47 (57%)
Query: 165 EEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
++E EEEEE EEE E EE G EE E EE EEE E E E E
Sbjct: 61 DDEPEEEEEPEPEEEGEEEPEPEEEGEEEPEPEETGEEEPEPEPEPE 107
Score = 28.4 bits (62), Expect = 1.9
Identities = 26/48 (54%), Positives = 28/48 (58%)
Query: 163 KEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEE 210
++E EEEEE E EE EE EEEG E E EE EEE E E E E
Sbjct: 60 PDDEPEEEEEPEPEEEGEEEPEPEEEGEEEPEPEETGEEEPEPEPEPE 107
Score = 27.6 bits (60), Expect = 3.0
Identities = 25/47 (53%), Positives = 25/47 (53%)
Query: 165 EEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
E EEE EEE EEE E EE G EE E E E E E E E E E
Sbjct: 71 EPEEEGEEEPEPEEEGEEEPEPEETGEEEPEPEPEPEPEPEPEPEPE 117
Score = 27.2 bits (59), Expect = 3.9
Identities = 26/47 (55%), Positives = 29/47 (61%), Gaps = 4/47 (8%)
Query: 164 EEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEE 210
+ ++E EEEEE EEE GEEE EEE EEE E EE EEE E
Sbjct: 59 DPDDEPEEEEEPEPEEE----GEEEPEPEEEGEEEPEPEETGEEEPE 101
Score = 26.8 bits (58), Expect = 5.6
Identities = 26/49 (53%), Positives = 28/49 (57%)
Query: 162 KKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEE 210
++E EEE E EEEG EE E GEEE E E E E E E E E E E
Sbjct: 73 EEEGEEEPEPEEEGEEEPEPEETGEEEPEPEPEPEPEPEPEPEPEPEPE 121
>gnl|CDD|234311 TIGR03685, L12P_arch, 50S ribosomal protein L12P. This model
represents the L12P protein of the large (50S) subunit
of the archaeal ribosome.
Length = 105
Score = 30.4 bits (69), Expect = 0.24
Identities = 19/30 (63%), Positives = 19/30 (63%)
Query: 182 GGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
EEEEEEEEEEEEEEEE EEE
Sbjct: 66 AAAAAAAAAAEEEEEEEEEEEEEEEESEEE 95
Score = 30.4 bits (69), Expect = 0.25
Identities = 16/27 (59%), Positives = 18/27 (66%)
Query: 159 KKKKKEEEEEEEEEEEGGEEEEEGGGG 185
++EEEEEEEEEEE E EEE G
Sbjct: 73 AAAEEEEEEEEEEEEEEEESEEEAMAG 99
Score = 28.5 bits (64), Expect = 0.92
Identities = 15/27 (55%), Positives = 18/27 (66%)
Query: 158 KKKKKKEEEEEEEEEEEGGEEEEEGGG 184
+++EEEEEEEEEEE EEE G
Sbjct: 73 AAAEEEEEEEEEEEEEEEESEEEAMAG 99
Score = 28.1 bits (63), Expect = 1.4
Identities = 10/23 (43%), Positives = 19/23 (82%)
Query: 155 KKKKKKKKKEEEEEEEEEEEGGE 177
+++++++++EEEEEEE EEE
Sbjct: 76 EEEEEEEEEEEEEEEESEEEAMA 98
Score = 26.2 bits (58), Expect = 6.4
Identities = 15/28 (53%), Positives = 15/28 (53%)
Query: 164 EEEEEEEEEEEGGEEEEEGGGGEEEGGG 191
EEEEEEE EEEEE EE G
Sbjct: 72 AAAAEEEEEEEEEEEEEEEESEEEAMAG 99
Score = 25.8 bits (57), Expect = 9.4
Identities = 9/23 (39%), Positives = 19/23 (82%)
Query: 154 KKKKKKKKKKEEEEEEEEEEEGG 176
++++++++++EEEEEE EEE
Sbjct: 76 EEEEEEEEEEEEEEEESEEEAMA 98
>gnl|CDD|217840 pfam04006, Mpp10, Mpp10 protein. This family includes proteins
related to Mpp10 (M phase phosphoprotein 10). The U3
small nucleolar ribonucleoprotein (snoRNP) is required
for three cleavage events that generate the mature 18S
rRNA from the pre-rRNA. In Saccharomyces cerevisiae,
depletion of Mpp10, a U3 snoRNP-specific protein, halts
18S rRNA production and impairs cleavage at the three U3
snoRNP-dependent sites.
Length = 613
Score = 31.9 bits (72), Expect = 0.26
Identities = 19/51 (37%), Positives = 33/51 (64%)
Query: 161 KKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
+++EEE+E E+E +E+E E E E+ ++E E++EE++ EEEE
Sbjct: 118 EEEEEEDESLEDEMIDDEDEADLFNESESSLEDLSDDETEDDEEKKMEEEE 168
Score = 31.5 bits (71), Expect = 0.28
Identities = 16/48 (33%), Positives = 26/48 (54%)
Query: 164 EEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
+ ++EEEEEE E+E E+E E E E+ ++E E++E
Sbjct: 113 DSADDEEEEEEDESLEDEMIDDEDEADLFNESESSLEDLSDDETEDDE 160
Score = 30.3 bits (68), Expect = 0.71
Identities = 14/48 (29%), Positives = 25/48 (52%)
Query: 164 EEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
E+ ++EEEEE E E+ +E+ E E E+ ++E E++
Sbjct: 112 EDSADDEEEEEEDESLEDEMIDDEDEADLFNESESSLEDLSDDETEDD 159
Score = 30.3 bits (68), Expect = 0.86
Identities = 16/48 (33%), Positives = 26/48 (54%)
Query: 164 EEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
++EEEEEE+ E+E +E E E E+ ++E E++EE
Sbjct: 114 SADDEEEEEEDESLEDEMIDDEDEADLFNESESSLEDLSDDETEDDEE 161
Score = 29.6 bits (66), Expect = 1.5
Identities = 17/47 (36%), Positives = 28/47 (59%)
Query: 165 EEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
++EEEEEE+E E+E E + E E E+ ++E E++EE+
Sbjct: 116 DDEEEEEEDESLEDEMIDDEDEADLFNESESSLEDLSDDETEDDEEK 162
Score = 29.2 bits (65), Expect = 1.6
Identities = 16/60 (26%), Positives = 29/60 (48%)
Query: 151 LRKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEE 210
L + K+ KKE + + EEE+E +E+E+ EE ++ + +E E + E
Sbjct: 275 LEDDEPDKEAVKKEADSKPEEEDEEDDEQEDDQDEEEPPEAAMDKVKLDEPVLEGVDLES 334
Score = 28.4 bits (63), Expect = 3.2
Identities = 14/59 (23%), Positives = 29/59 (49%)
Query: 153 KKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
+ K+ KK+ + + EEE+EE E+E++ E ++ + +E E + E +
Sbjct: 278 DEPDKEAVKKEADSKPEEEDEEDDEQEDDQDEEEPPEAAMDKVKLDEPVLEGVDLESPK 336
Score = 28.0 bits (62), Expect = 4.3
Identities = 14/59 (23%), Positives = 29/59 (49%)
Query: 153 KKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
+ + K+ K+E + + EEE+ ++E+E EEE ++ + +E E + E
Sbjct: 276 EDDEPDKEAVKKEADSKPEEEDEEDDEQEDDQDEEEPPEAAMDKVKLDEPVLEGVDLES 334
Score = 27.6 bits (61), Expect = 5.4
Identities = 14/59 (23%), Positives = 31/59 (52%)
Query: 153 KKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
+ K+ KK+ + + EEE+EE+ +E+++ E ++ + +E E + E +E
Sbjct: 279 EPDKEAVKKEADSKPEEEDEEDDEQEDDQDEEEPPEAAMDKVKLDEPVLEGVDLESPKE 337
Score = 27.6 bits (61), Expect = 5.9
Identities = 15/55 (27%), Positives = 27/55 (49%)
Query: 155 KKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEE 209
+K + +E + + E E+G G + + ++EEEEEE+E E+E
Sbjct: 76 QKYVEFLINKEHIRVLAKLQDSESHEDGSDGSDMDSEDSADDEEEEEEDESLEDE 130
Score = 27.3 bits (60), Expect = 8.2
Identities = 13/46 (28%), Positives = 24/46 (52%)
Query: 166 EEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
+ ++ E E G + + + EEEEE+E E+E ++E+E
Sbjct: 93 KLQDSESHEDGSDGSDMDSEDSADDEEEEEEDESLEDEMIDDEDEA 138
Score = 26.9 bits (59), Expect = 9.1
Identities = 17/57 (29%), Positives = 30/57 (52%)
Query: 152 RKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEE 208
++ KK+ K EEE+EE++E+E ++EEE + +E E + E +E
Sbjct: 282 KEAVKKEADSKPEEEDEEDDEQEDDQDEEEPPEAAMDKVKLDEPVLEGVDLESPKEL 338
Score = 26.9 bits (59), Expect = 9.2
Identities = 17/56 (30%), Positives = 35/56 (62%)
Query: 156 KKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
K+K KKK+ ++ E E++ ++E + + E+EE++E+E++++EEE E
Sbjct: 260 PKEKDKKKDAGDDAELEDDEPDKEAVKKEADSKPEEEDEEDDEQEDDQDEEEPPEA 315
>gnl|CDD|227880 COG5593, COG5593, Nucleic-acid-binding protein possibly involved in
ribosomal biogenesis [Translation, ribosomal structure
and biogenesis].
Length = 821
Score = 31.9 bits (72), Expect = 0.26
Identities = 20/49 (40%), Positives = 28/49 (57%)
Query: 163 KEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
K E +E ++EEG +E GE++ E EE+E EEE+EEEE
Sbjct: 737 KSEGSQESDQEEGLDEIFYSFDGEQDNSDSFAESSEEDESSEEEKEEEE 785
>gnl|CDD|237276 PRK13024, PRK13024, bifunctional preprotein translocase subunit
SecD/SecF; Reviewed.
Length = 755
Score = 31.7 bits (73), Expect = 0.26
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 145 PLLVLTLRKKKKKKKKKKKEEEEEEEEEE 173
PL + +++ KKKKK+KK ++ E E+ E
Sbjct: 727 PLWLDLEKRRLKKKKKRKKVKKWEVEKIE 755
>gnl|CDD|237799 PRK14715, PRK14715, DNA polymerase II large subunit; Provisional.
Length = 1627
Score = 31.7 bits (72), Expect = 0.27
Identities = 16/33 (48%), Positives = 23/33 (69%)
Query: 157 KKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEG 189
K+ K+KKEE++EE+ EE EE +E EE+G
Sbjct: 277 KELKEKKEEKDEEKSEEVKTEEVDEEFEEEEKG 309
Score = 31.7 bits (72), Expect = 0.31
Identities = 15/30 (50%), Positives = 23/30 (76%)
Query: 153 KKKKKKKKKKKEEEEEEEEEEEGGEEEEEG 182
K+KK++K ++K EE + EE +E EEEE+G
Sbjct: 280 KEKKEEKDEEKSEEVKTEEVDEEFEEEEKG 309
Score = 30.6 bits (69), Expect = 0.66
Identities = 14/31 (45%), Positives = 23/31 (74%)
Query: 151 LRKKKKKKKKKKKEEEEEEEEEEEGGEEEEE 181
L++KK++K ++K EE + EE +EE EEE+
Sbjct: 279 LKEKKEEKDEEKSEEVKTEEVDEEFEEEEKG 309
Score = 29.4 bits (66), Expect = 1.5
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 10/53 (18%)
Query: 158 KKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEE 210
K+ K+K+EE++EE+ EE EE + EE EEEE+ E E+
Sbjct: 277 KELKEKKEEKDEEKSEEVKTEEVD----------EEFEEEEKGFYYELYEKVN 319
Score = 29.0 bits (65), Expect = 2.3
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 12/52 (23%)
Query: 160 KKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
K+ KE++EE++EE+ EE EE +EE EEEE+ E E
Sbjct: 277 KELKEKKEEKDEEKS------------EEVKTEEVDEEFEEEEKGFYYELYE 316
Score = 27.5 bits (61), Expect = 6.1
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 153 KKKKKKKKKKKEEEEEEEEEEEGGEEEEE 181
KK++K ++K +E + EE +EE EE+
Sbjct: 282 KKEEKDEEKSEEVKTEEVDEEFEEEEKGF 310
Score = 27.5 bits (61), Expect = 7.6
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 17/58 (29%)
Query: 154 KKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
K+ K+KK++K+EE+ EE + E E +EE EEEE+ E E+
Sbjct: 277 KELKEKKEEKDEEKSEEVKTE-----------------EVDEEFEEEEKGFYYELYEK 317
>gnl|CDD|218576 pfam05395, DARPP-32, Protein phosphatase inhibitor 1/DARPP-32.
This family consists of several mammalian protein
phosphatase inhibitor 1 (IPP-1) and dopamine- and
cAMP-regulated neuronal phosphoprotein (DARPP-32)
proteins. Protein phosphatase inhibitor-1 is involved in
signal transduction and is an endogenous inhibitor of
protein phosphatase-1. It has been demonstrated that
DARPP-32, if phosphorylated, can inhibit
protein-phosphatase-1. DARPP-32 has a key role in many
neurotransmitter pathways throughout the brain and has
been shown to be involved in controlling receptors, ion
channels and other physiological factors including the
brain's response to drugs of abuse, such as cocaine,
opiates and nicotine. DARPP-32 is reciprocally regulated
by the two neurotransmitters that are most often
implicated in schizophrenia - dopamine and glutamate.
Dopamine activates DARPP-32 through the D1 receptor
pathway and disables DARPP-32 through the D2 receptor.
Glutamate, acting through the N-methyl-d-aspartate
receptor, renders DARPP-32 inactive. A mutant form of
DARPP-32 has been linked with gastric cancers.
Length = 170
Score = 31.0 bits (70), Expect = 0.27
Identities = 11/42 (26%), Positives = 14/42 (33%)
Query: 170 EEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
EE EEE + G E E E ++ EE
Sbjct: 95 GSLEENQASEEEDELDSPDELGYPTGETESTEAQDSEEPGSC 136
Score = 30.3 bits (68), Expect = 0.45
Identities = 13/44 (29%), Positives = 18/44 (40%)
Query: 168 EEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
EE + EEE+E +E G E E E ++ EE
Sbjct: 95 GSLEENQASEEEDELDSPDELGYPTGETESTEAQDSEEPGSCPT 138
Score = 29.9 bits (67), Expect = 0.65
Identities = 12/52 (23%), Positives = 22/52 (42%)
Query: 160 KKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
+ EE + EEE+ + +E G E E ++ EE ++ + E
Sbjct: 93 SQGSLEENQASEEEDELDSPDELGYPTGETESTEAQDSEEPGSCPTQDAQSE 144
>gnl|CDD|188606 TIGR04091, LTA_dltB, D-alanyl-lipoteichoic acid biosynthesis
protein DltB. Members of this protein family are DltB,
part of a four-gene operon for D-alanyl-lipoteichoic
acid biosynthesis that is present in the vast majority
of low-GC Gram-positive organisms. This protein may be
involved in transport of D-alanine across the plasma
membrane [Cell envelope, Biosynthesis and degradation of
murein sacculus and peptidoglycan].
Length = 380
Score = 31.4 bits (72), Expect = 0.29
Identities = 12/21 (57%), Positives = 12/21 (57%), Gaps = 3/21 (14%)
Query: 146 LLVLT---LRKKKKKKKKKKK 163
LL LT RK KK KK KK
Sbjct: 334 LLALTDAWQRKSKKYKKNKKN 354
>gnl|CDD|217830 pfam03986, Autophagy_N, Autophagocytosis associated protein (Atg3),
N-terminal domain. Autophagocytosis is a
starvation-induced process responsible for transport of
cytoplasmic proteins to the lysosome/vacuole. Atg3 is a
ubiquitin like modifier that is topologically similar to
the canonical E2 enzyme. It catalyzes the conjugation of
Atg8 and phosphatidylethanolamine.
Length = 146
Score = 30.4 bits (69), Expect = 0.31
Identities = 9/56 (16%), Positives = 28/56 (50%), Gaps = 8/56 (14%)
Query: 164 EEEEEEEEEEEGGEEEEEGGGGEEEGGGEEE--------EEEEEEEEEEEEEEEEE 211
EE E+E+E++G +++ +EE +++ + + +E+++++
Sbjct: 89 EEIVEDEDEDDGWVTTHGNRDKQKDDIADEEDIPEIGDDDDDVVDSSDADEDDDDD 144
>gnl|CDD|218177 pfam04615, Utp14, Utp14 protein. This protein is found to be part
of a large ribonucleoprotein complex containing the U3
snoRNA. Depletion of the Utp proteins impedes production
of the 18S rRNA, indicating that they are part of the
active pre-rRNA processing complex. This large RNP
complex has been termed the small subunit (SSU)
processome.
Length = 728
Score = 31.6 bits (72), Expect = 0.31
Identities = 23/59 (38%), Positives = 36/59 (61%)
Query: 153 KKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
+ KK KK+ K E +E++E +EE E+EE E+ + E+ ++EEEEEE +EE
Sbjct: 435 ESKKLKKENKNEFKEKKESDEEEELEDEEEAKVEKVANKLLKRSEKAQKEEEEEELDEE 493
Score = 30.8 bits (70), Expect = 0.47
Identities = 21/52 (40%), Positives = 31/52 (59%)
Query: 153 KKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEE 204
K + K+KK+ +EEEE E+EEE E+ + ++EEEEEE +EE
Sbjct: 443 NKNEFKEKKESDEEEELEDEEEAKVEKVANKLLKRSEKAQKEEEEEELDEEN 494
Score = 30.8 bits (70), Expect = 0.51
Identities = 26/78 (33%), Positives = 41/78 (52%)
Query: 134 ERNVKLPKMLEPLLVLTLRKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEE 193
++NV K KK KK+ K + +E++E +EEE E+EEE + +
Sbjct: 417 KKNVGRRKFGPENGEKEAESKKLKKENKNEFKEKKESDEEEELEDEEEAKVEKVANKLLK 476
Query: 194 EEEEEEEEEEEEEEEEEE 211
E+ ++EEEEEE +EE
Sbjct: 477 RSEKAQKEEEEEELDEEN 494
Score = 27.7 bits (62), Expect = 5.1
Identities = 16/61 (26%), Positives = 35/61 (57%)
Query: 151 LRKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEE 210
LR+ ++ ++K + + EE+E+E+ EEE+ E++ GE ++ + +E E++
Sbjct: 308 LRQGEELRRKIEGKSVSEEDEDEDSDSEEEDEDDDEDDDDGENPWMLRKKLGKLKEGEDD 367
Query: 211 E 211
E
Sbjct: 368 E 368
>gnl|CDD|143416 cd07098, ALDH_F15-22, Aldehyde dehydrogenase family 15A1 and
22A1-like. Aldehyde dehydrogenase family members
ALDH15A1 (Saccharomyces cerevisiae YHR039C) and ALDH22A1
(Arabidopsis thaliana, EC=1.2.1.3), and similar
sequences, are in this CD. Significant improvement of
stress tolerance in tobacco plants was observed by
overexpressing the ALDH22A1 gene from maize (Zea mays)
and was accompanied by a reduction of malondialdehyde
derived from cellular lipid peroxidation.
Length = 465
Score = 31.5 bits (72), Expect = 0.31
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 56 CHHSPRLFQLLTKMKETAEAYLGHSVRDAVI 86
C H P L QL+T + ETAEA H V D +
Sbjct: 177 CGHDPDLVQLVTCLPETAEALTSHPVIDHIT 207
>gnl|CDD|217787 pfam03910, Adeno_PV, Adenovirus minor core protein PV.
Length = 336
Score = 31.3 bits (71), Expect = 0.32
Identities = 12/38 (31%), Positives = 23/38 (60%)
Query: 140 PKMLEPLLVLTLRKKKKKKKKKKKEEEEEEEEEEEGGE 177
P++ P V K +K K+ KK+++ EE++E ++ E
Sbjct: 16 PEIYGPRPVKDEAKPRKIKRVKKRKKREEKDELDDEVE 53
Score = 27.9 bits (62), Expect = 4.1
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 152 RKKKKKKKKKKKEEEEEEEEEEEGGEE 178
K +K K+ KK ++ EE++E + E
Sbjct: 27 EAKPRKIKRVKKRKKREEKDELDDEVE 53
>gnl|CDD|215153 PLN02271, PLN02271, serine hydroxymethyltransferase.
Length = 586
Score = 31.3 bits (71), Expect = 0.34
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 177 EEEEEGGGGEEEGGGEEEEEEEEEEE 202
E++EE E G E+EEE+ E+E
Sbjct: 53 EQKEEKEEDAGEEGDEDEEEQGEDEH 78
Score = 28.6 bits (64), Expect = 2.9
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 178 EEEEGGGGEEEGGGEEEEEEEEEEEE 203
E++E + G+E+EEE+ E+E
Sbjct: 53 EQKEEKEEDAGEEGDEDEEEQGEDEH 78
Score = 27.8 bits (62), Expect = 5.4
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 176 GEEEEEGGGGEEEGGGEEEEEEEEE 200
+EE+E GEE EEE+ E+E
Sbjct: 54 QKEEKEEDAGEEGDEDEEEQGEDEH 78
Score = 27.5 bits (61), Expect = 5.5
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 185 GEEEGGGEEEEEEEEEEEEEEEEEE 209
+EE + EE +E+EEE+ E+E
Sbjct: 54 QKEEKEEDAGEEGDEDEEEQGEDEH 78
Score = 27.5 bits (61), Expect = 5.8
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 169 EEEEEEGGEEEEEGGGGEEEGGGEEE 194
E++EE+ + EEG EEE G +E
Sbjct: 53 EQKEEKEEDAGEEGDEDEEEQGEDEH 78
Score = 27.5 bits (61), Expect = 7.0
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 174 EGGEEEEEGGGGEEEGGGEEEEEEEE 199
E EE+EE G E + EE+ E+E
Sbjct: 53 EQKEEKEEDAGEEGDEDEEEQGEDEH 78
>gnl|CDD|205219 pfam13038, DUF3899, Domain of unknown function (DUF3899). Putative
Tryptophanyl-tRNA synthetase.
Length = 92
Score = 29.6 bits (67), Expect = 0.36
Identities = 7/29 (24%), Positives = 17/29 (58%)
Query: 152 RKKKKKKKKKKKEEEEEEEEEEEGGEEEE 180
R ++ +KK+K+ EE+E + +++
Sbjct: 36 RLFRQLVEKKEKDSIEEDEFANDKKVKKK 64
>gnl|CDD|218328 pfam04921, XAP5, XAP5, circadian clock regulator. This protein is
found in a wide range of eukaryotes. It is a nuclear
protein and is suggested to be DNA binding. In plants,
this family is essential for correct circadian clock
functioning by acting as a light-quality regulator
coordinating the activities of blue and red light
signalling pathways during plant growth - inhibiting
growth in red light but promoting growth in blue light.
Length = 233
Score = 30.8 bits (70), Expect = 0.36
Identities = 25/86 (29%), Positives = 37/86 (43%), Gaps = 28/86 (32%)
Query: 154 KKKKKKKKKK----EEEEEEEEEEEGGEEEEEGGGGEEEGGG------------------ 191
KKKKKKKK K +++EEE+E+E E++ E +
Sbjct: 1 KKKKKKKKSKLSFGDDDEEEDEDEGEDEKKVPKESSEPDEANVNPNKKKIGKNPSVDTSF 60
Query: 192 ------EEEEEEEEEEEEEEEEEEEE 211
EE+E E EE EE +++E
Sbjct: 61 LPDKAREEKEAELREELREEFLKKQE 86
Score = 30.4 bits (69), Expect = 0.48
Identities = 24/80 (30%), Positives = 34/80 (42%), Gaps = 20/80 (25%)
Query: 152 RKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEE---------------- 195
+KKKKKKK K +++EEE+E+ GE+E++ E
Sbjct: 1 KKKKKKKKSKLSFGDDDEEEDEDEGEDEKKVPKESSEPDEANVNPNKKKIGKNPSVDTSF 60
Query: 196 ----EEEEEEEEEEEEEEEE 211
EE+E E EE EE
Sbjct: 61 LPDKAREEKEAELREELREE 80
>gnl|CDD|237564 PRK13930, PRK13930, rod shape-determining protein MreB;
Provisional.
Length = 335
Score = 30.9 bits (71), Expect = 0.37
Identities = 16/45 (35%), Positives = 26/45 (57%)
Query: 84 AVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLD 128
VI VP+ + +R+A ++A AG + ++ EP AAA+ GL
Sbjct: 103 IVICVPSGITEVERRAVREAAEHAGAREVYLIEEPMAAAIGAGLP 147
>gnl|CDD|236954 PRK11678, PRK11678, putative chaperone; Provisional.
Length = 450
Score = 31.0 bits (71), Expect = 0.38
Identities = 26/77 (33%), Positives = 35/77 (45%), Gaps = 13/77 (16%)
Query: 62 LFQ-LLTKM----KETAEAYLGHSVRDAVITVPAYFN-----DAQRQAT---KDAGAIAG 108
LF+ L+ M K+ AEA L ++ AVI P F +A RQA + A AG
Sbjct: 125 LFEDLVCAMMLHIKQQAEAQLQAAITQAVIGRPVNFQGLGGEEANRQAEGILERAAKRAG 184
Query: 109 LNVMRIVNEPTAAALAY 125
+ EP AA L +
Sbjct: 185 FKDVEFQFEPVAAGLDF 201
>gnl|CDD|115385 pfam06723, MreB_Mbl, MreB/Mbl protein. This family consists of
bacterial MreB and Mbl proteins as well as two related
archaeal sequences. MreB is known to be a rod
shape-determining protein in bacteria and goes to make
up the bacterial cytoskeleton. Genes coding for MreB/Mbl
are only found in elongated bacteria, not in coccoid
forms. It has been speculated that constituents of the
eukaryotic cytoskeleton (tubulin, actin) may have
evolved from prokaryotic precursor proteins closely
related to today's bacterial proteins FtsZ and MreB/Mbl.
Length = 327
Score = 31.0 bits (71), Expect = 0.38
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 11/69 (15%)
Query: 71 ETAEAYLGHSVRDA-----------VITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPT 119
E EA L + ++ VI VP+ + +R+A K+A AG + ++ EP
Sbjct: 72 EVTEAMLKYFIKKVHGRRSLSKPRVVICVPSGITEVERRAVKEAAKNAGAREVFLIEEPM 131
Query: 120 AAALAYGLD 128
AAA+ GL
Sbjct: 132 AAAIGAGLP 140
>gnl|CDD|216546 pfam01516, Orbi_VP6, Orbivirus helicase VP6. The VP6 protein a
minor protein in the core of the virion is probably the
viral helicase.
Length = 322
Score = 31.2 bits (70), Expect = 0.38
Identities = 14/42 (33%), Positives = 27/42 (64%)
Query: 161 KKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEE 202
+ E +E+E ++E+G E+ G GE++ G +EE ++E E+
Sbjct: 29 ESGESKEKEPKDEDGQEQRISDGEGEQKQKGGKEESDKETED 70
Score = 27.7 bits (61), Expect = 4.2
Identities = 13/42 (30%), Positives = 26/42 (61%)
Query: 154 KKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEE 195
+ + K+K+ ++E+ +E+ GE E++ GG+EE E E+
Sbjct: 29 ESGESKEKEPKDEDGQEQRISDGEGEQKQKGGKEESDKETED 70
Score = 27.0 bits (59), Expect = 8.3
Identities = 11/45 (24%), Positives = 26/45 (57%)
Query: 164 EEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEE 208
+ E E +E+ ++E+ +G GE++++ +EE ++E E+
Sbjct: 26 DWFESGESKEKEPKDEDGQEQRISDGEGEQKQKGGKEESDKETED 70
>gnl|CDD|237744 PRK14521, rpsP, 30S ribosomal protein S16; Provisional.
Length = 186
Score = 30.5 bits (69), Expect = 0.39
Identities = 21/58 (36%), Positives = 23/58 (39%)
Query: 154 KKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
KK + +KK E E E E EE EEEE EE EE EE E
Sbjct: 129 KKAALEAEKKVNEARAEAVAEKKAAEAAAVAAEEAAAAEEEEAEEAPAEEAPAEESAE 186
Score = 26.3 bits (58), Expect = 9.7
Identities = 18/57 (31%), Positives = 24/57 (42%)
Query: 153 KKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEE 209
KK K K KK ++ E E++ E E ++ EE EEEE EE
Sbjct: 117 KKDKLSKAKKAAKKAALEAEKKVNEARAEAVAEKKAAEAAAVAAEEAAAAEEEEAEE 173
>gnl|CDD|117592 pfam09026, Cenp-B_dimeris, Centromere protein B dimerisation
domain. The centromere protein B (CENP-B) dimerisation
domain is composed of two alpha-helices, which are
folded into an antiparallel configuration. Dimerisation
of CENP-B is mediated by this domain, in which monomers
dimerise to form a symmetrical, antiparallel, four-helix
bundle structure with a large hydrophobic patch in which
23 residues of one monomer form van der Waals contacts
with the other monomer. This CENP-B dimer configuration
may be suitable for capturing two distant CENP-B boxes
during centromeric heterochromatin formation.
Length = 101
Score = 29.7 bits (66), Expect = 0.40
Identities = 10/31 (32%), Positives = 23/31 (74%)
Query: 181 EGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
EG + EEE++++E+EE+++E+++E+
Sbjct: 7 EGEEDSDSDSDEEEDDDDEDEEDDDEDDDED 37
Score = 27.8 bits (61), Expect = 2.1
Identities = 12/36 (33%), Positives = 28/36 (77%), Gaps = 3/36 (8%)
Query: 176 GEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
GEE+ + EEE ++++E+EE+++E+++E+++E
Sbjct: 8 GEEDSDSDSDEEE---DDDDEDEEDDDEDDDEDDDE 40
Score = 27.0 bits (59), Expect = 3.0
Identities = 11/37 (29%), Positives = 27/37 (72%), Gaps = 3/37 (8%)
Query: 174 EGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEE 210
EG E+ + EE+ +++E+EE+++E+++E+++E
Sbjct: 7 EGEEDSDSDSDEEED---DDDEDEEDDDEDDDEDDDE 40
>gnl|CDD|100109 cd05831, Ribosomal_P1, Ribosomal protein P1. This subfamily
represents the eukaryotic large ribosomal protein P1.
Eukaryotic P1 and P2 are functionally equivalent to the
bacterial protein L7/L12, but are not homologous to
L7/L12. P1 is located in the L12 stalk, with proteins
P2, P0, L11, and 28S rRNA. P1 and P2 are the only
proteins in the ribosome to occur as multimers, always
appearing as sets of heterodimers. Recent data indicate
that eukaryotes have four copies (two heterodimers),
while most archaeal species contain six copies of L12p
(three homodimers) and bacteria may have four or six
copies (two or three homodimers), depending on the
species. Experiments using S. cerevisiae P1 and P2
indicate that P1 proteins are positioned more internally
with limited reactivity in the C-terminal domains, while
P2 proteins seem to be more externally located and are
more likely to interact with other cellular components.
In lower eukaryotes, P1 and P2 are further subdivided
into P1A, P1B, P2A, and P2B, which form P1A/P2B and
P1B/P2A heterodimers. Some plant species have a third
P-protein, called P3, which is not homologous to P1 and
P2. In humans, P1 and P2 are strongly autoimmunogenic.
They play a significant role in the etiology and
pathogenesis of systemic lupus erythema (SLE). In
addition, the ribosome-inactivating protein
trichosanthin (TCS) interacts with human P0, P1, and P2,
with its primary binding site located in the C-terminal
region of P2. TCS inactivates the ribosome by
depurinating a specific adenine in the sarcin-ricin loop
of 28S rRNA.
Length = 103
Score = 29.6 bits (67), Expect = 0.41
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 182 GGGGEEEGGGEEEEEEEEEEEEEEEEEE 209
E ++EE++EEEEEE +++
Sbjct: 70 AAAAAAAAAAEAKKEEKKEEEEEESDDD 97
Score = 28.8 bits (65), Expect = 0.76
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 183 GGGEEEGGGEEEEEEEEEEEEEEEEEEE 210
E ++EE++EEEEEE +++
Sbjct: 70 AAAAAAAAAAEAKKEEKKEEEEEESDDD 97
Score = 28.4 bits (64), Expect = 1.1
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 189 GGGEEEEEEEEEEEEEEEEEEEE 211
E ++EE++EEEEEE +++
Sbjct: 75 AAAAAEAKKEEKKEEEEEESDDD 97
Score = 28.1 bits (63), Expect = 1.4
Identities = 11/23 (47%), Positives = 17/23 (73%)
Query: 153 KKKKKKKKKKKEEEEEEEEEEEG 175
+ KK++KKEEEEEE +++ G
Sbjct: 77 AAAEAKKEEKKEEEEEESDDDMG 99
Score = 27.7 bits (62), Expect = 1.7
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 189 GGGEEEEEEEEEEEEEEEEEEEE 211
E ++EE++EEEEEE ++
Sbjct: 74 AAAAAAEAKKEEKKEEEEEESDD 96
Score = 27.3 bits (61), Expect = 2.7
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 189 GGGEEEEEEEEEEEEEEEEEEEE 211
E ++EE++EEEEEE +
Sbjct: 73 AAAAAAAEAKKEEKKEEEEEESD 95
Score = 27.3 bits (61), Expect = 3.0
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 154 KKKKKKKKKKEEEEEEEEEEEGG 176
+ KK++K+EEEEEE +++ G
Sbjct: 77 AAAEAKKEEKKEEEEEESDDDMG 99
Score = 26.9 bits (60), Expect = 4.0
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 189 GGGEEEEEEEEEEEEEEEEEEEE 211
E ++EE++EEEEEE
Sbjct: 72 AAAAAAAAEAKKEEKKEEEEEES 94
>gnl|CDD|238995 cd02038, FleN-like, FleN is a member of the Fer4_NifH superfamily.
It shares the common function as an ATPase, with the
ATP-binding domain at the N-terminus. In Pseudomonas
aeruginosa, FleN gene is involved in regulating the
number of flagella and chemotactic motility by
influencing FleQ activity.
Length = 139
Score = 30.2 bits (69), Expect = 0.41
Identities = 14/53 (26%), Positives = 20/53 (37%), Gaps = 11/53 (20%)
Query: 102 DAGAIAGLNVMRIVN-----------EPTAAALAYGLDKNLKGERNVKLPKML 143
D GA NV+ EPT+ AY L K L + V +++
Sbjct: 51 DTGAGISDNVLDFFLAADEVIVVTTPEPTSITDAYALIKKLAKQLRVLNFRVV 103
>gnl|CDD|239286 cd02988, Phd_like_VIAF, Phosducin (Phd)-like family, Viral
inhibitor of apoptosis (IAP)-associated factor (VIAF)
subfamily; VIAF is a Phd-like protein that functions in
caspase activation during apoptosis. It was identified
as an IAP binding protein through a screen of a human
B-cell library using a prototype IAP. VIAF lacks a
consensus IAP binding motif and while it does not
function as an IAP antagonist, it still plays a
regulatory role in the complete activation of caspases.
VIAF itself is a substrate for IAP-mediated
ubiquitination, suggesting that it may be a target of
IAPs in the prevention of cell death. The similarity of
VIAF to Phd points to a potential role distinct from
apoptosis regulation. Phd functions as a cytosolic
regulator of G protein by specifically binding to G
protein betagamma (Gbg)-subunits. The C-terminal domain
of Phd adopts a thioredoxin fold, but it does not
contain a CXXC motif. Phd interacts with G protein beta
mostly through the N-terminal helical domain.
Length = 192
Score = 30.3 bits (69), Expect = 0.43
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Query: 159 KKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEE 210
K +EEEEE E E E E +E +EE +EEE++ EE
Sbjct: 16 KPPSPKEEEEEALELAIQEAHEN----ALEKKLLDELDEELDEEEDDRFLEE 63
Score = 29.5 bits (67), Expect = 0.82
Identities = 13/48 (27%), Positives = 21/48 (43%)
Query: 164 EEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
+ +EEEE E E + +E +EE +EEE++ E
Sbjct: 15 PKPPSPKEEEEEALELAIQEAHENALEKKLLDELDEELDEEEDDRFLE 62
>gnl|CDD|240285 PTZ00135, PTZ00135, 60S acidic ribosomal protein P0; Provisional.
Length = 310
Score = 30.8 bits (70), Expect = 0.44
Identities = 8/24 (33%), Positives = 10/24 (41%)
Query: 153 KKKKKKKKKKKEEEEEEEEEEEGG 176
EEEEEEE++ G
Sbjct: 282 AAAAAAAAAAAPAEEEEEEEDDMG 305
Score = 30.8 bits (70), Expect = 0.50
Identities = 8/22 (36%), Positives = 10/22 (45%)
Query: 155 KKKKKKKKKEEEEEEEEEEEGG 176
EEEEEEE++ G
Sbjct: 285 AAAAAAAAPAEEEEEEEDDMGF 306
Score = 30.4 bits (69), Expect = 0.67
Identities = 7/20 (35%), Positives = 9/20 (45%)
Query: 192 EEEEEEEEEEEEEEEEEEEE 211
EEEEEEE++
Sbjct: 284 AAAAAAAAAPAEEEEEEEDD 303
Score = 30.0 bits (68), Expect = 0.72
Identities = 7/20 (35%), Positives = 8/20 (40%)
Query: 192 EEEEEEEEEEEEEEEEEEEE 211
EEEEEEE+
Sbjct: 283 AAAAAAAAAAPAEEEEEEED 302
Score = 29.6 bits (67), Expect = 1.1
Identities = 7/22 (31%), Positives = 8/22 (36%)
Query: 153 KKKKKKKKKKKEEEEEEEEEEE 174
EEEEEEE+
Sbjct: 281 AAAAAAAAAAAAPAEEEEEEED 302
>gnl|CDD|240520 cd13156, KOW_RPL6, KOW motif of Ribosomal Protein L6. RPL6
contains KOW motif that has an extra ribosomal role as
an oncogenic. KOW domain is known as an RNA-binding
motif that is shared so far among some families of
ribosomal proteins, the essential bacterial
transcriptional elongation factor NusG, the eukaryotic
chromatin elongation factor Spt5, the higher eukaryotic
KIN17 proteins and Mtr4. .
Length = 152
Score = 30.2 bits (69), Expect = 0.44
Identities = 14/22 (63%), Positives = 19/22 (86%)
Query: 153 KKKKKKKKKKKEEEEEEEEEEE 174
K+KKKKKKKKKE E EE++++
Sbjct: 82 KRKKKKKKKKKEGEFFEEKKKK 103
Score = 30.2 bits (69), Expect = 0.48
Identities = 15/28 (53%), Positives = 20/28 (71%)
Query: 154 KKKKKKKKKKEEEEEEEEEEEGGEEEEE 181
K+KKKKKKKK+E E EE+++ EE
Sbjct: 82 KRKKKKKKKKKEGEFFEEKKKKYVVSEE 109
Score = 28.7 bits (65), Expect = 1.3
Identities = 16/30 (53%), Positives = 22/30 (73%)
Query: 152 RKKKKKKKKKKKEEEEEEEEEEEGGEEEEE 181
RKKKKKKKKK+ E EE++++ EE +E
Sbjct: 83 RKKKKKKKKKEGEFFEEKKKKYVVSEERKE 112
Score = 27.9 bits (63), Expect = 2.6
Identities = 12/23 (52%), Positives = 19/23 (82%)
Query: 152 RKKKKKKKKKKKEEEEEEEEEEE 174
++KKKKKKKKK+ E EE++++
Sbjct: 82 KRKKKKKKKKKEGEFFEEKKKKY 104
>gnl|CDD|165442 PHA03171, PHA03171, UL37 tegument protein; Provisional.
Length = 499
Score = 30.8 bits (69), Expect = 0.46
Identities = 25/82 (30%), Positives = 35/82 (42%), Gaps = 12/82 (14%)
Query: 139 LPKML--EPLLVLTLRKKKKKKKKKKKEEEEEEEEEE----------EGGEEEEEGGGGE 186
LP L E L +++ + +++ + E E E E GEE EE
Sbjct: 34 LPPWLRKEKACALRQQRRHRLQRQHGVIDGENSETERPRDLTAALFAEAGEEAEEEDNDR 93
Query: 187 EEGGGEEEEEEEEEEEEEEEEE 208
E E EEE+EEEE E + E
Sbjct: 94 ECPDTEAEEEDEEEEIEAPDPE 115
Score = 27.7 bits (61), Expect = 4.6
Identities = 24/83 (28%), Positives = 34/83 (40%), Gaps = 13/83 (15%)
Query: 141 KMLEPLLVLTLRKKKKKKKKKKKEEEEEEEEEEEGGEEEE-------------EGGGGEE 187
K E L LRK+K ++++ + + GE E E G E
Sbjct: 28 KRAEDPLPPWLRKEKACALRQQRRHRLQRQHGVIDGENSETERPRDLTAALFAEAGEEAE 87
Query: 188 EGGGEEEEEEEEEEEEEEEEEEE 210
E + E + E EEE+EEEE E
Sbjct: 88 EEDNDRECPDTEAEEEDEEEEIE 110
>gnl|CDD|220684 pfam10310, DUF2413, Protein of unknown function (DUF2413). This is
a family of proteins conserved in fungi. The function is
not known.
Length = 436
Score = 30.9 bits (70), Expect = 0.50
Identities = 18/80 (22%), Positives = 25/80 (31%)
Query: 130 NLKGERNVKLPKMLEPLLVLTLRKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEG 189
L+ K PK + + KK K + EE+ + E
Sbjct: 40 ELEQSEKAKPPKKPKEASRPGTPRNPKKSSKPTESSAASSEEKPAKPRKSAESTRSSHPK 99
Query: 190 GGEEEEEEEEEEEEEEEEEE 209
E EEEEE EE +
Sbjct: 100 SKAPSTESEEEEEPEETPDP 119
>gnl|CDD|224969 COG2058, RPP1A, Ribosomal protein L12E/L44/L45/RPP1/RPP2
[Translation, ribosomal structure and biogenesis].
Length = 109
Score = 29.3 bits (66), Expect = 0.51
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 185 GEEEGGGEEEEEEEEEEEEEEEEEEEE 211
G E +E EEEE+EEE EEE +++
Sbjct: 76 GAEAAAEADEAEEEEKEEEAEEESDDD 102
Score = 29.3 bits (66), Expect = 0.53
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 175 GGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEE 210
G G E +E EEEE+EEE EEE +++
Sbjct: 67 AGAAAAAAAGAEAAAEADEAEEEEKEEEAEEESDDD 102
Score = 28.1 bits (63), Expect = 1.6
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 182 GGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
G G E E +E EEEE+EEE EE
Sbjct: 68 GAAAAAAAGAEAAAEADEAEEEEKEEEAEE 97
Score = 27.8 bits (62), Expect = 1.8
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 187 EEGGGEEEEEEEEEEEEEEEEEEEE 211
G E +E EEEE+EEE EEE
Sbjct: 74 AAGAEAAAEADEAEEEEKEEEAEEE 98
Score = 27.4 bits (61), Expect = 2.5
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 186 EEEGGGEEEEEEEEEEEEEEEEEEEE 211
E +E EEEE+EEE EEE
Sbjct: 74 AAGAEAAAEADEAEEEEKEEEAEEES 99
Score = 26.6 bits (59), Expect = 4.8
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 159 KKKKKEEEEEEEEEEEGGEEEEEGGGG 185
+ +E EEEE+EEE EE ++
Sbjct: 79 AAAEADEAEEEEKEEEAEEESDDDMLF 105
Score = 26.6 bits (59), Expect = 5.4
Identities = 13/30 (43%), Positives = 15/30 (50%)
Query: 182 GGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
G G E E +E EEEE+EEE E
Sbjct: 67 AGAAAAAAAGAEAAAEADEAEEEEKEEEAE 96
>gnl|CDD|184416 PRK13955, mscL, large-conductance mechanosensitive channel;
Provisional.
Length = 130
Score = 29.8 bits (67), Expect = 0.54
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 146 LLVLTLRKKKKKKKKKKKEEEEEEEEEEE 174
+ V K KK+++K+EE E +EEE
Sbjct: 85 MFVKVFNKLTSKKEEEKEEEIPEPTKEEE 113
Score = 29.8 bits (67), Expect = 0.58
Identities = 13/22 (59%), Positives = 14/22 (63%)
Query: 158 KKKKKKEEEEEEEEEEEGGEEE 179
K KKEEE+EEE E EEE
Sbjct: 92 KLTSKKEEEKEEEIPEPTKEEE 113
Score = 28.2 bits (63), Expect = 1.8
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 159 KKKKKEEEEEEEEEEEGGEEEE 180
K K+EEE+EEE E +EEE
Sbjct: 92 KLTSKKEEEKEEEIPEPTKEEE 113
Score = 26.7 bits (59), Expect = 5.2
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 157 KKKKKKKEEEEEEEEEEEGGEE 178
K KK+EE+EEE E EE
Sbjct: 92 KLTSKKEEEKEEEIPEPTKEEE 113
>gnl|CDD|215521 PLN02967, PLN02967, kinase.
Length = 581
Score = 30.8 bits (69), Expect = 0.56
Identities = 16/54 (29%), Positives = 29/54 (53%)
Query: 153 KKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEE 206
KK +K++K KK +E+ E++ E + E E EEE + E+++ E+
Sbjct: 135 KKVRKRRKVKKMDEDVEDQGSESEVSDVEESEFVTSLENESEEELDLEKDDGED 188
Score = 30.4 bits (68), Expect = 0.72
Identities = 18/58 (31%), Positives = 34/58 (58%)
Query: 153 KKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEE 210
+K +KK +K+++ ++ +E+ E+ G E E E E E E EEE + E+++ E+
Sbjct: 131 EKTEKKVRKRRKVKKMDEDVEDQGSESEVSDVEESEFVTSLENESEEELDLEKDDGED 188
Score = 29.2 bits (65), Expect = 1.7
Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query: 150 TLRKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEE 208
T +K +K++K KK +E+ E++ E + EE E E E EEE + E+++ E+
Sbjct: 133 TEKKVRKRRKVKKMDEDVEDQGSESEVSDVEE---SEFVTSLENESEEELDLEKDDGED 188
Score = 28.9 bits (64), Expect = 2.1
Identities = 20/70 (28%), Positives = 27/70 (38%), Gaps = 13/70 (18%)
Query: 154 KKKKKKKKKKEEEEEEEEEEEGGE-------------EEEEGGGGEEEGGGEEEEEEEEE 200
KK ++ ++K + EEE E E+ E G E E EE E
Sbjct: 111 KKTPRRTRRKAAAASSDVEEEKTEKKVRKRRKVKKMDEDVEDQGSESEVSDVEESEFVTS 170
Query: 201 EEEEEEEEEE 210
E E EEE +
Sbjct: 171 LENESEEELD 180
>gnl|CDD|115057 pfam06375, BLVR, Bovine leukaemia virus receptor (BLVR). This
family consists of several bovine specific leukaemia
virus receptors which are thought to function as
transmembrane proteins, although their exact function is
unknown.
Length = 561
Score = 30.8 bits (69), Expect = 0.59
Identities = 18/50 (36%), Positives = 30/50 (60%)
Query: 131 LKGERNVKLPKMLEPLLVLTLRKKKKKKKKKKKEEEEEEEEEEEGGEEEE 180
++ RN + K E V + KK KK KKK+K+E+E+E ++++ E E
Sbjct: 175 VQKHRNAETSKSPEKGDVPAVEKKSKKPKKKEKKEKEKERDKDKKKEVEG 224
>gnl|CDD|225962 COG3428, COG3428, Predicted membrane protein [Function unknown].
Length = 494
Score = 30.5 bits (69), Expect = 0.60
Identities = 8/35 (22%), Positives = 12/35 (34%)
Query: 148 VLTLRKKKKKKKKKKKEEEEEEEEEEEGGEEEEEG 182
L ++ + KK E E + EE E
Sbjct: 137 ELAALVREARVKKLDALELAEADTPEEEVAEVLAR 171
Score = 27.4 bits (61), Expect = 6.3
Identities = 6/31 (19%), Positives = 10/31 (32%)
Query: 153 KKKKKKKKKKKEEEEEEEEEEEGGEEEEEGG 183
++ + KK E E + E E
Sbjct: 141 LVREARVKKLDALELAEADTPEEEVAEVLAR 171
>gnl|CDD|218737 pfam05764, YL1, YL1 nuclear protein. The proteins in this family
are designated YL1. These proteins have been shown to be
DNA-binding and may be a transcription factor.
Length = 238
Score = 30.0 bits (68), Expect = 0.61
Identities = 18/45 (40%), Positives = 28/45 (62%)
Query: 167 EEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
EEEE++EE EEEE + + E++E E ++EEE E+E +
Sbjct: 35 EEEEDDEEFEIEEEEEEEEVDSDFDDSEDDEPESDDEEEGEKELQ 79
Score = 29.3 bits (66), Expect = 1.2
Identities = 19/46 (41%), Positives = 29/46 (63%)
Query: 166 EEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
EEEE++EE EEEEE + + E++E E ++EEE E+E +
Sbjct: 35 EEEEDDEEFEIEEEEEEEEVDSDFDDSEDDEPESDDEEEGEKELQR 80
Score = 27.0 bits (60), Expect = 7.8
Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 4/51 (7%)
Query: 165 EEEEEEEEEEGGEEEEEGGG----GEEEGGGEEEEEEEEEEEEEEEEEEEE 211
EEEE++EE E EEEEE + E E ++EEE E+E + EE +
Sbjct: 35 EEEEDDEEFEIEEEEEEEEVDSDFDDSEDDEPESDDEEEGEKELQREERLK 85
>gnl|CDD|219655 pfam07946, DUF1682, Protein of unknown function (DUF1682). The
members of this family are all hypothetical eukaryotic
proteins of unknown function. One member is described as
being an adipocyte-specific protein, but no evidence of
this was found.
Length = 322
Score = 30.3 bits (69), Expect = 0.63
Identities = 21/63 (33%), Positives = 32/63 (50%)
Query: 149 LTLRKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEE 208
L L + +K K +EEEEE+ + E +EE +EE EE E + + EE+ +
Sbjct: 251 LKLSPEVLRKVDKTREEEEEKILKAAEEERQEEAQEKKEEKKKEEREAKLAKLSPEEQRK 310
Query: 209 EEE 211
EE
Sbjct: 311 LEE 313
Score = 27.2 bits (61), Expect = 6.4
Identities = 15/55 (27%), Positives = 32/55 (58%), Gaps = 4/55 (7%)
Query: 153 KKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEE 207
+K K +++++EE +E++EE+ EE E + EE+ + EE+E +++
Sbjct: 270 EKILKAAEEERQEEAQEKKEEKKKEEREA----KLAKLSPEEQRKLEEKERKKQA 320
Score = 26.8 bits (60), Expect = 8.7
Identities = 11/37 (29%), Positives = 21/37 (56%)
Query: 138 KLPKMLEPLLVLTLRKKKKKKKKKKKEEEEEEEEEEE 174
K+ K E ++KK++KKK+++E + + EE
Sbjct: 271 KILKAAEEERQEEAQEKKEEKKKEEREAKLAKLSPEE 307
>gnl|CDD|129416 TIGR00316, cdhC, CO dehydrogenase/CO-methylating acetyl-CoA
synthase complex, beta subunit. Nomenclature follows
the description for Methanosarcina thermophila. The
CO-methylating acetyl-CoA synthase is considered the
defining enzyme of the Wood-Ljungdahl pathway, used for
acetate catabolism by sulfate reducing bacteria but for
acetate biosynthesis by acetogenic bacteria such as
oorella thermoacetica (f. Clostridium thermoaceticum)
[Energy metabolism, Chemoautotrophy].
Length = 458
Score = 30.2 bits (68), Expect = 0.70
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 188 EGGGEEEEEEEEEEEEEEEEEEEE 211
+ E +EEE EEEEE + EE
Sbjct: 397 KRVVREVDEEEIEEEEEAMQPEEM 420
Score = 29.1 bits (65), Expect = 2.1
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 187 EEGGGEEEEEEEEEEEEEEEEEEEE 211
+ E +EEE EEEEE + EE E
Sbjct: 397 KRVVREVDEEEIEEEEEAMQPEEME 421
Score = 26.7 bits (59), Expect = 9.0
Identities = 11/26 (42%), Positives = 12/26 (46%)
Query: 183 GGGEEEGGGEEEEEEEEEEEEEEEEE 208
E E EEEEE + EE E E
Sbjct: 398 RVVREVDEEEIEEEEEAMQPEEMEME 423
>gnl|CDD|217502 pfam03343, SART-1, SART-1 family. SART-1 is a protein involved in
cell cycle arrest and pre-mRNA splicing. It has been
shown to be a component of U4/U6 x U5 tri-snRNP complex
in human, Schizosaccharomyces pombe and Saccharomyces
cerevisiae. SART-1 is a known tumour antigen in a range
of cancers recognised by T cells.
Length = 603
Score = 30.5 bits (69), Expect = 0.70
Identities = 18/62 (29%), Positives = 33/62 (53%)
Query: 150 TLRKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEE 209
L +K + K + +E + EE++E+ +E+ +G +EE+EEE++E E
Sbjct: 407 PLEEKPENKDESVEEISDAEEDDEDEEDEDGDGDVEMSAVDNDEEKEEEDKEAIPSTILE 466
Query: 210 EE 211
EE
Sbjct: 467 EE 468
Score = 29.0 bits (65), Expect = 2.0
Identities = 22/59 (37%), Positives = 32/59 (54%)
Query: 153 KKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
KK KKKKKKKK+ ++ +E+E E E G EEE E+ ++ +EE+E
Sbjct: 276 KKPKKKKKKKKKRRKDLDEDELEPEAEGLGSSDSGSRKDVEEENARLEDSPKKRKEEQE 334
Score = 28.6 bits (64), Expect = 2.7
Identities = 21/61 (34%), Positives = 32/61 (52%)
Query: 151 LRKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEE 210
+K KKKKKKKKK ++ +E+E E E EEE E+ ++ +EE+E
Sbjct: 275 FKKPKKKKKKKKKRRKDLDEDELEPEAEGLGSSDSGSRKDVEEENARLEDSPKKRKEEQE 334
Query: 211 E 211
+
Sbjct: 335 D 335
Score = 28.2 bits (63), Expect = 3.5
Identities = 16/60 (26%), Positives = 29/60 (48%)
Query: 152 RKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
K + K + ++ + EE++E+E E+ + EE+EEE++E EEE
Sbjct: 410 EKPENKDESVEEISDAEEDDEDEEDEDGDGDVEMSAVDNDEEKEEEDKEAIPSTILEEEP 469
>gnl|CDD|218556 pfam05327, RRN3, RNA polymerase I specific transcription initiation
factor RRN3. This family consists of several eukaryotic
proteins which are homologous to the yeast RRN3 protein.
RRN3 is one of the RRN genes specifically required for
the transcription of rDNA by RNA polymerase I (Pol I) in
Saccharomyces cerevisiae.
Length = 554
Score = 30.3 bits (69), Expect = 0.72
Identities = 11/44 (25%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
Query: 165 EEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEE 208
++ ++EEEE +E++ ++E + ++++EEE + E E
Sbjct: 223 DDIDDEEEERVLADEDD----DDEDDMFDMDDDDEEESDPEVER 262
Score = 30.0 bits (68), Expect = 0.91
Identities = 10/42 (23%), Positives = 23/42 (54%)
Query: 162 KKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEE 203
+ ++ ++EEEE +E+++ + ++EEE + E E
Sbjct: 221 ELDDIDDEEEERVLADEDDDDEDDMFDMDDDDEEESDPEVER 262
>gnl|CDD|129982 TIGR00904, mreB, cell shape determining protein, MreB/Mrl family.
MreB (mecillinam resistance) in E. coli (also called
envB) and the paralogous pair MreB and Mrl of Bacillus
subtilis have all been shown to help determine cell
shape. This protein is present in a wide variety of
bacteria, including spirochetes, but is missing from the
Mycoplasmas and from Gram-positive cocci. Most completed
bacterial genomes have a single member of this family.
In some species it is an essential gene. A close homolog
is found in the Archaeon Methanobacterium
thermoautotrophicum, and a more distant homolog in
Archaeoglobus fulgidus. The family is related to cell
division protein FtsA and heat shock protein DnaK [Cell
envelope, Biosynthesis and degradation of murein
sacculus and peptidoglycan].
Length = 333
Score = 30.1 bits (68), Expect = 0.72
Identities = 16/43 (37%), Positives = 25/43 (58%)
Query: 85 VITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGL 127
VI VP+ +R+A K++ AG + ++ EP AAA+ GL
Sbjct: 102 VICVPSGITPVERRAVKESALSAGAREVYLIEEPMAAAIGAGL 144
>gnl|CDD|224680 COG1766, fliF, Flagellar basal body M-ring protein [Cell motility
and secretion].
Length = 545
Score = 30.4 bits (69), Expect = 0.78
Identities = 16/66 (24%), Positives = 31/66 (46%)
Query: 146 LLVLTLRKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEE 205
+L + +R + ++++ E E EEE +G EEE+ + E+ +EE+ +
Sbjct: 457 VLFIIVRPVIRPRRRRGAEALEAAEEERQGPEEEDVLPEEIRDSNDEQLGLGDEEQRRGK 516
Query: 206 EEEEEE 211
E E
Sbjct: 517 EVLLER 522
Score = 30.0 bits (68), Expect = 0.88
Identities = 17/64 (26%), Positives = 29/64 (45%)
Query: 146 LLVLTLRKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEE 205
LVL + + + ++++ E E EEE EEE EE +E+ +EE+
Sbjct: 455 FLVLFIIVRPVIRPRRRRGAEALEAAEEERQGPEEEDVLPEEIRDSNDEQLGLGDEEQRR 514
Query: 206 EEEE 209
+E
Sbjct: 515 GKEV 518
>gnl|CDD|220371 pfam09736, Bud13, Pre-mRNA-splicing factor of RES complex. This
entry is characterized by proteins with alternating
conserved and low-complexity regions. Bud13 together
with Snu17p and a newly identified factor,
Pml1p/Ylr016c, form a novel trimeric complex. called The
RES complex, pre-mRNA retention and splicing complex.
Subunits of this complex are not essential for viability
of yeasts but they are required for efficient splicing
in vitro and in vivo. Furthermore, inactivation of this
complex causes pre-mRNA leakage from the nucleus. Bud13
contains a unique, phylogenetically conserved C-terminal
region of unknown function.
Length = 141
Score = 29.2 bits (66), Expect = 0.79
Identities = 18/60 (30%), Positives = 36/60 (60%), Gaps = 12/60 (20%)
Query: 152 RKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
++K+++K+++KEE+E +EE+E +E G G ++EE E+ EE E+ + +
Sbjct: 14 IEEKREEKEREKEEKERKEEKE------------KEWGKGLVQKEEREKRLEELEKAKNK 61
Score = 28.4 bits (64), Expect = 1.6
Identities = 18/54 (33%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 152 RKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEE 205
R ++K+++KE E+EE+E +E E+E+E G G + E+ EE E+ + +
Sbjct: 10 RIIDIEEKREEKEREKEEKERKE--EKEKEWGKGLVQKEEREKRLEELEKAKNK 61
>gnl|CDD|237563 PRK13928, PRK13928, rod shape-determining protein Mbl; Provisional.
Length = 336
Score = 29.9 bits (68), Expect = 0.81
Identities = 14/44 (31%), Positives = 25/44 (56%)
Query: 85 VITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLD 128
+I +P +++A ++A AG + ++ EP AAA+ GLD
Sbjct: 99 MICIPTGITSVEKRAVREAAEQAGAKKVYLIEEPLAAAIGAGLD 142
>gnl|CDD|218312 pfam04889, Cwf_Cwc_15, Cwf15/Cwc15 cell cycle control protein.
This family represents Cwf15/Cwc15 (from
Schizosaccharomyces pombe and Saccharomyces cerevisiae
respectively) and their homologues. The function of
these proteins is unknown, but they form part of the
spliceosome and are thus thought to be involved in mRNA
splicing.
Length = 241
Score = 29.7 bits (67), Expect = 0.85
Identities = 16/99 (16%), Positives = 36/99 (36%), Gaps = 11/99 (11%)
Query: 124 AYGLDKNLKGERNVKLPKMLEPLLVLTLRKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGG 183
+N + L+ ++ + K+K+ EE+ + + + +
Sbjct: 70 HKSKKENKLAIEDADKSTNLDASNEGDEDDDEEDEIKRKRIEEDARNSDADDSDSSSDSD 129
Query: 184 GGEEEGGGEEEEEEEE-----------EEEEEEEEEEEE 211
+++ ++ E+E E EE+E EEEE
Sbjct: 130 SSDDDSDDDDSEDETAALLRELEKIKKERAEEKEREEEE 168
Score = 28.5 bits (64), Expect = 2.3
Identities = 13/71 (18%), Positives = 30/71 (42%), Gaps = 12/71 (16%)
Query: 153 KKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEE------------EEEEEEE 200
K+K+ ++ + + ++ + + +++ + E EE+E E
Sbjct: 106 KRKRIEEDARNSDADDSDSSSDSDSSDDDSDDDDSEDETAALLRELEKIKKERAEEKERE 165
Query: 201 EEEEEEEEEEE 211
EEE+ EEE+
Sbjct: 166 EEEKAAEEEKA 176
>gnl|CDD|220605 pfam10156, Med17, Subunit 17 of Mediator complex. This Mediator
complex subunit was formerly known as Srb4 in yeasts or
Trap80 in Drosophila and human. The Med17 subunit is
located within the head domain and is essential for cell
viability to the extent that a mutant strain of
cerevisiae lacking it shows all RNA polymerase
II-dependent transcription ceasing at non-permissive
temperatures.
Length = 454
Score = 30.0 bits (68), Expect = 0.88
Identities = 13/44 (29%), Positives = 22/44 (50%)
Query: 164 EEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEE 207
EE EE +E + + EEE E++ ++ EE ++ EE
Sbjct: 51 EESLREEIAKEAAKIDFSEESDEEEDDEEDDNDDSEENKDTVEE 94
Score = 27.7 bits (62), Expect = 5.0
Identities = 11/40 (27%), Positives = 22/40 (55%)
Query: 172 EEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
EE EE + + +EEE++EE++ ++ EE ++
Sbjct: 51 EESLREEIAKEAAKIDFSEESDEEEDDEEDDNDDSEENKD 90
Score = 27.7 bits (62), Expect = 5.7
Identities = 9/34 (26%), Positives = 18/34 (52%)
Query: 178 EEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
+E E EEE++EE++ ++ EE ++
Sbjct: 59 AKEAAKIDFSEESDEEEDDEEDDNDDSEENKDTV 92
>gnl|CDD|221733 pfam12720, DUF3807, Protein of unknown function (DUF3807). This is
a family of conserved fungal proteins of unknown
function.
Length = 169
Score = 29.3 bits (66), Expect = 0.92
Identities = 12/52 (23%), Positives = 25/52 (48%)
Query: 160 KKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
+++ +EE E EEE E + G E +E E++ ++ + ++E
Sbjct: 68 ERELKEEAEAEEEGEVDASPDAGAVAGESSADRKEAEQQGAAQKRKSCRDKE 119
Score = 26.6 bits (59), Expect = 8.4
Identities = 13/53 (24%), Positives = 25/53 (47%)
Query: 159 KKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
+++ KEE E EEE E + GE +E E++ ++ + ++E
Sbjct: 68 ERELKEEAEAEEEGEVDASPDAGAVAGESSADRKEAEQQGAAQKRKSCRDKER 120
>gnl|CDD|221775 pfam12794, MscS_TM, Mechanosensitive ion channel inner membrane
domain 1. The small mechanosensitive channel, MscS, is
a part of the turgor-driven solute efflux system that
protects bacteria from lysis in the event of osmotic
shock. The MscS protein alone is sufficient to form a
functional mechanosensitive channel gated directly by
tension in the lipid bilayer. The MscS proteins are
heptamers of three transmembrane subunits with seven
converging M3 domains, and this domain is one of the
inner membrane domains.
Length = 339
Score = 29.9 bits (68), Expect = 0.94
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 149 LTLRKKKKKKKKKKKEEEEEEEEEEEGGEEEEE 181
L + K K+ + + EEEEE EG E E
Sbjct: 258 LAYERAKAKRAEILAQRAEEEEESSEGAAETIE 290
Score = 29.5 bits (67), Expect = 1.1
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 152 RKKKKKKKKKKKEEEEEEEEEEEGGEEEEE 181
R K K+ + + EEEEE E E EE
Sbjct: 262 RAKAKRAEILAQRAEEEEESSEGAAETIEE 291
>gnl|CDD|217611 pfam03552, Cellulose_synt, Cellulose synthase. Cellulose, an
aggregate of unbranched polymers of beta-1,4-linked
glucose residues, is the major component of wood and
thus paper, and is synthesised by plants, most algae,
some bacteria and fungi, and even some animals. The
genes that synthesise cellulose in higher plants differ
greatly from the well-characterized genes found in
Acetobacter and Agrobacterium sp. More correctly
designated as 'cellulose synthase catalytic subunits',
plant cellulose synthase (CesA) proteins are integral
membrane proteins, approximately 1,000 amino acids in
length. There are a number of highly conserved residues,
including several motifs shown to be necessary for
processive glycosyltransferase activity.
Length = 716
Score = 30.1 bits (68), Expect = 0.97
Identities = 17/64 (26%), Positives = 24/64 (37%), Gaps = 3/64 (4%)
Query: 125 YGLDKNLKGERNVKLPKMLEPLLVLTLRKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGG 184
YG D K + RKK K K KK++ + +E E E+ G
Sbjct: 289 YGYDPPRKEKH---PGMTSICCCCFGRRKKPKSASKAKKKDSKRKESEAPIFNLEDIDEG 345
Query: 185 GEEE 188
E+E
Sbjct: 346 DEDE 349
>gnl|CDD|177755 PLN00152, PLN00152, DNA-directed RNA polymerase; Provisional.
Length = 130
Score = 29.1 bits (65), Expect = 0.99
Identities = 17/44 (38%), Positives = 24/44 (54%)
Query: 164 EEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEE 207
E+E E E EEG EE+ E +E G E E++EE+E +
Sbjct: 10 EDEPSEPEIEEGAEEDSESNNNDEVKGSIGENEDKEEQEPVQRP 53
>gnl|CDD|227458 COG5129, MAK16, Nuclear protein with HMG-like acidic region
[General function prediction only].
Length = 303
Score = 29.6 bits (66), Expect = 1.0
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 12/75 (16%)
Query: 148 VLTLRKKKKKKKKKKKEEEEEEEEEEEGGEEEEEG------------GGGEEEGGGEEEE 195
T R+K++ +K++ EEEEE + E E ++ E G + E EE
Sbjct: 189 AATEREKRQDEKERYVEEEEESDTELEAVTDDSEKEKTKKKDLEKWLGSDQSMETSESEE 248
Query: 196 EEEEEEEEEEEEEEE 210
EE E E +E+E+E+
Sbjct: 249 EESSESESDEDEDED 263
>gnl|CDD|221581 pfam12446, DUF3682, Protein of unknown function (DUF3682). This
domain family is found in eukaryotes, and is typically
between 125 and 136 amino acids in length.
Length = 133
Score = 29.0 bits (65), Expect = 1.0
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 181 EGGGGEEEGGGEEEEEEEEEEEEEEEEEE 209
EG G G G +EEEEEEEE E++++
Sbjct: 82 EGPAGTTSGTGHTRQEEEEEEEENEKQQQ 110
Score = 27.1 bits (60), Expect = 4.6
Identities = 11/23 (47%), Positives = 17/23 (73%)
Query: 189 GGGEEEEEEEEEEEEEEEEEEEE 211
G +EEEEEEEE E++++ +E
Sbjct: 92 GHTRQEEEEEEEENEKQQQSDEA 114
Score = 26.7 bits (59), Expect = 5.7
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 188 EGGGEEEEEEEEEEEEEEEEEEEE 211
+EEEEEEEE E++++ +E +
Sbjct: 92 GHTRQEEEEEEEENEKQQQSDEAQ 115
>gnl|CDD|215742 pfam00136, DNA_pol_B, DNA polymerase family B. This region of DNA
polymerase B appears to consist of more than one
structural domain, possibly including elongation,
DNA-binding and dNTP binding activities.
Length = 458
Score = 30.0 bits (68), Expect = 1.0
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 5/39 (12%)
Query: 132 KGERNVKLPKMLEPLLVLTLRKKKKKKKKKKKEEEEEEE 170
KG R LP +L L K+K+KKK KE ++ EE
Sbjct: 114 KGVRKGILPVLLR-----DLLAKRKEKKKLMKESKDPEE 147
>gnl|CDD|107307 cd06312, PBP1_ABC_sugar_binding_like_4, Periplasmic sugar-binding
domain of uncharacterized ABC-type transport systems.
Periplasmic sugar-binding domain of uncharacterized
ABC-type transport systems that share homology with a
family of pentose/hexose sugar-binding proteins of the
type I periplasmic binding protein superfamily, which
consists of two domains connected by a three-stranded
hinge. The substrate specificity of this group is not
known, but it is predicted to be involved in the
transport of sugar-containing molecules and chemotaxis.
Length = 271
Score = 29.5 bits (67), Expect = 1.1
Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 66 LTKMKETAEAYL-GHSVRDAVITVPAYFNDAQRQATKDAGA 105
T++ AYL + DAV+T+ A +A K AG
Sbjct: 167 PTEVASRIAAYLRANPDVDAVLTLGAPSAAPAAKALKQAGL 207
>gnl|CDD|114011 pfam05262, Borrelia_P83, Borrelia P83/100 protein. This family
consists of several Borrelia P83/P100 antigen proteins.
Length = 489
Score = 30.0 bits (67), Expect = 1.1
Identities = 14/68 (20%), Positives = 36/68 (52%)
Query: 144 EPLLVLTLRKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEE 203
+P + ++ K+ + +K+E E+ + E ++ EE + + +E + E+E E+
Sbjct: 262 KPADTSSPKEDKQVAENQKREIEKAQIEIKKNDEEALKAKDHKAFDLKQESKASEKEAED 321
Query: 204 EEEEEEEE 211
+E E +++
Sbjct: 322 KELEAQKK 329
>gnl|CDD|234887 PRK01001, PRK01001, putative inner membrane protein translocase
component YidC; Provisional.
Length = 795
Score = 29.8 bits (67), Expect = 1.1
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 98 QATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGE-RNVKLPKMLEPLLVLT 150
++D +G+ + I++ A A+ Y + K K E VKLPK +PL V +
Sbjct: 384 GDSEDLWITSGVPEVEIMSNAFAPAIKYRVIKKNKSELDKVKLPKAKDPLAVRS 437
>gnl|CDD|220654 pfam10254, Pacs-1, PACS-1 cytosolic sorting protein. PACS-1 is a
cytosolic sorting protein that directs the localisation
of membrane proteins in the trans-Golgi network
(TGN)/endosomal system. PACS-1 connects the clathrin
adaptor AP-1 to acidic cluster sorting motifs contained
in the cytoplasmic domain of cargo proteins such as
furin, the cation-independent mannose-6-phosphate
receptor and in viral proteins such as human
immunodeficiency virus type 1 Nef.
Length = 413
Score = 29.8 bits (67), Expect = 1.1
Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 7/35 (20%)
Query: 145 PLLVLTLRKKKKKKK-------KKKKEEEEEEEEE 172
+ +T+ K+K KK KK KE+E E + +
Sbjct: 323 NTMSMTVVTKEKNKKVPVMFLGKKPKEKEVESKSQ 357
>gnl|CDD|240246 PTZ00053, PTZ00053, methionine aminopeptidase 2; Provisional.
Length = 470
Score = 29.7 bits (67), Expect = 1.1
Identities = 9/58 (15%), Positives = 31/58 (53%)
Query: 152 RKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEE 209
+K KKK KK K++ ++++ E + ++ +++++++++++ E +
Sbjct: 19 QKGTKKKNKKSKKDVDDDDAFLAELISENQEAENKQNNKKKKKKKKKKKKKNLGEAYD 76
Score = 29.3 bits (66), Expect = 1.4
Identities = 11/59 (18%), Positives = 34/59 (57%)
Query: 153 KKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
K+K KKK KK +++ ++++ E E E + +++++++++++++ E +
Sbjct: 18 KQKGTKKKNKKSKKDVDDDDAFLAELISENQEAENKQNNKKKKKKKKKKKKKNLGEAYD 76
Score = 28.1 bits (63), Expect = 4.1
Identities = 9/59 (15%), Positives = 31/59 (52%)
Query: 153 KKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
K+K KKK K+ +++ ++++ E E +++++++++++++ E
Sbjct: 17 NKQKGTKKKNKKSKKDVDDDDAFLAELISENQEAENKQNNKKKKKKKKKKKKKNLGEAY 75
>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family. Atrophin-1 is the
protein product of the dentatorubral-pallidoluysian
atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive
neurodegenerative disorder. It is caused by the
expansion of a CAG repeat in the DRPLA gene on
chromosome 12p. This results in an extended
polyglutamine region in atrophin-1, that is thought to
confer toxicity to the protein, possibly through
altering its interactions with other proteins. The
expansion of a CAG repeat is also the underlying defect
in six other neurodegenerative disorders, including
Huntington's disease. One interaction of expanded
polyglutamine repeats that is thought to be pathogenic
is that with the short glutamine repeat in the
transcriptional coactivator CREB binding protein, CBP.
This interaction draws CBP away from its usual nuclear
location to the expanded polyglutamine repeat protein
aggregates that are characteristic of the polyglutamine
neurodegenerative disorders. This interferes with
CBP-mediated transcription and causes cytotoxicity.
Length = 979
Score = 30.0 bits (67), Expect = 1.1
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 12/54 (22%)
Query: 158 KKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
K KK+EE E+ + E E+ EE E E+E+E+E E E E E
Sbjct: 576 KLAKKREEAVEKAKREA------------EQKAREEREREKEKEKERERERERE 617
Score = 29.7 bits (66), Expect = 1.4
Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 17/66 (25%)
Query: 145 PLLVLTLRKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEE 204
PL L KK+++ +K K E E++ EE E E+E+E+E E E
Sbjct: 571 PLASSKLAKKREEAVEKAKREAEQKAREER-----------------EREKEKEKERERE 613
Query: 205 EEEEEE 210
E E E
Sbjct: 614 REREAE 619
>gnl|CDD|177447 PHA02664, PHA02664, hypothetical protein; Provisional.
Length = 534
Score = 29.6 bits (66), Expect = 1.2
Identities = 13/37 (35%), Positives = 22/37 (59%)
Query: 166 EEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEE 202
E+E + ++ +E + G ++GG + EEEEEEE
Sbjct: 485 EDESDSADDSWGDESDSGIEHDDGGVGQAIEEEEEEE 521
Score = 29.2 bits (65), Expect = 1.8
Identities = 14/37 (37%), Positives = 23/37 (62%)
Query: 165 EEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEE 201
E+E + ++ G+E + G ++ G G+ EEEEEEE
Sbjct: 485 EDESDSADDSWGDESDSGIEHDDGGVGQAIEEEEEEE 521
Score = 28.0 bits (62), Expect = 3.5
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 167 EEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEE 203
E+E + + +E G E + GG + EEEEEEE
Sbjct: 485 EDESDSADDSWGDESDSGIEHDDGGVGQAIEEEEEEE 521
>gnl|CDD|223130 COG0052, RpsB, Ribosomal protein S2 [Translation, ribosomal
structure and biogenesis].
Length = 252
Score = 29.2 bits (66), Expect = 1.3
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 181 EGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
EG GG + EE+EE EE E +EE E
Sbjct: 222 EGRGGALDEEEAAIEEDEEVEEFEAKEEAAE 252
Score = 28.0 bits (63), Expect = 3.7
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 180 EEGGGGEEEGGGEEEEEEEEEEEEEEEEEEE 210
E GG +E EE+EE EE E +EE E
Sbjct: 222 EGRGGALDEEEAAIEEDEEVEEFEAKEEAAE 252
Score = 27.2 bits (61), Expect = 5.7
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 179 EEEGGGGEEEGGGEEEEEEEEEEEEEEEEEE 209
E GG +EE EE+EE EE E +EE E
Sbjct: 222 EGRGGALDEEEAAIEEDEEVEEFEAKEEAAE 252
>gnl|CDD|215212 PLN02372, PLN02372, violaxanthin de-epoxidase.
Length = 455
Score = 29.4 bits (66), Expect = 1.3
Identities = 28/75 (37%), Positives = 40/75 (53%), Gaps = 7/75 (9%)
Query: 144 EPLLVLTLRKK-----KKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGE--EEGGGEEEEE 196
EP L+ L K K K+ ++ EEE E+E E+ G+EEE EEG E E++
Sbjct: 359 EPPLLERLEKDVEEGEKTIVKEARQIEEELEKEVEKLGKEEESLFKRVALEEGLKELEQD 418
Query: 197 EEEEEEEEEEEEEEE 211
EE +E +EE+E
Sbjct: 419 EENFLKELSKEEKEL 433
>gnl|CDD|221179 pfam11711, Tim54, Inner membrane protein import complex subunit
Tim54. Mitochondrial function depends on the import of
hundreds of different proteins synthesised in the
cytosol. Protein import is a multi-step pathway which
includes the binding of precursor proteins to surface
receptors, translocation of the precursor across one or
both mitochondrial membranes, and folding and assembly
of the imported protein inside the mitochondrion. Most
precursor proteins carry amino-terminal targeting
signals, called pre-sequences, and are imported into
mitochondria via import complexes located in both the
outer and the inner membrane (IM). The IM complex, TIM,
is made up of at least two proteins which mediate
translocation of proteins into the matrix by removing
their signal peptide and another pair of proteins, Tim54
and Tim22, that insert the polytopic proteins, that
carry internal targetting information, into the inner
membrane.
Length = 377
Score = 29.3 bits (66), Expect = 1.3
Identities = 16/49 (32%), Positives = 18/49 (36%)
Query: 163 KEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
E E +E E E E E EE E EE E+ EEE
Sbjct: 197 PPEPPEPTVDEAAPETEVEATPAAESPAEPAEETAETTPEETEDAPEEE 245
Score = 27.8 bits (62), Expect = 4.0
Identities = 15/50 (30%), Positives = 17/50 (34%)
Query: 162 KKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
E E +E E E E EE E EE E+ EEE
Sbjct: 197 PPEPPEPTVDEAAPETEVEATPAAESPAEPAEETAETTPEETEDAPEEEN 246
>gnl|CDD|191249 pfam05279, Asp-B-Hydro_N, Aspartyl beta-hydroxylase N-terminal
region. This family includes the N-terminal regions of
the junctin, junctate and aspartyl beta-hydroxylase
proteins. Junctate is an integral ER/SR membrane calcium
binding protein, which comes from an alternatively
spliced form of the same gene that generates aspartyl
beta-hydroxylase and junctin. Aspartyl beta-hydroxylase
catalyzes the post-translational hydroxylation of
aspartic acid or asparagine residues contained within
epidermal growth factor (EGF) domains of proteins.
Length = 240
Score = 29.1 bits (65), Expect = 1.3
Identities = 16/60 (26%), Positives = 34/60 (56%)
Query: 149 LTLRKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEE 208
L +RK K+K +++ KE+ + E+ ++EE+G G E + ++ E+ ++ +E E
Sbjct: 92 LAVRKTKQKVEEEVKEQLQSLLEKIVVSKQEEDGPGKEPQLDEDKFLLAEDSDDRQETLE 151
Score = 26.4 bits (58), Expect = 9.7
Identities = 17/62 (27%), Positives = 26/62 (41%)
Query: 148 VLTLRKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEE 207
VL K+K + EE E EEEG + EE E+ + E+ ++E
Sbjct: 63 VLLGLKEKSTSEPTVPPEEAEPHAEEEGQLAVRKTKQKVEEEVKEQLQSLLEKIVVSKQE 122
Query: 208 EE 209
E+
Sbjct: 123 ED 124
>gnl|CDD|219141 pfam06697, DUF1191, Protein of unknown function (DUF1191). This
family contains hypothetical plant proteins of unknown
function.
Length = 278
Score = 29.3 bits (66), Expect = 1.3
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 146 LLVLTLRKKKKKKKKKKKEEEEEEEEEEE 174
L VL R + K+KK+++E E EE E
Sbjct: 229 LAVLVARLVRYKRKKRREEMERRAEEGEA 257
>gnl|CDD|227563 COG5238, RNA1, Ran GTPase-activating protein (RanGAP) involved in
mRNA processing and transport [Signal transduction
mechanisms / RNA processing and modification].
Length = 388
Score = 29.5 bits (66), Expect = 1.3
Identities = 22/66 (33%), Positives = 30/66 (45%)
Query: 145 PLLVLTLRKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEE 204
PLLV R + K+ + E+ E E++EG EE EE E+E E +E
Sbjct: 303 PLLVDLERNGNRIKELADFGDYYEDIFEVVEVVEKQEGDVVTEESTDEESEDEVEIDESV 362
Query: 205 EEEEEE 210
EE E
Sbjct: 363 IEEVAE 368
Score = 29.1 bits (65), Expect = 1.6
Identities = 16/46 (34%), Positives = 20/46 (43%)
Query: 165 EEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEE 210
E E E++EG EE E E E +E EE E E E +
Sbjct: 330 EVVEVVEKQEGDVVTEESTDEESEDEVEIDESVIEEVAEMELLEVQ 375
Score = 28.7 bits (64), Expect = 2.0
Identities = 14/46 (30%), Positives = 19/46 (41%)
Query: 166 EEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
E E E++ G+ E EE E +E EE E E E +
Sbjct: 330 EVVEVVEKQEGDVVTEESTDEESEDEVEIDESVIEEVAEMELLEVQ 375
>gnl|CDD|227615 COG5296, COG5296, Transcription factor involved in TATA site
selection and in elongation by RNA polymerase II
[Transcription].
Length = 521
Score = 29.6 bits (66), Expect = 1.3
Identities = 19/83 (22%), Positives = 35/83 (42%), Gaps = 6/83 (7%)
Query: 127 LDKNLKGERNVKLPKMLEPLLVLTLRKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGE 186
+ L K K+LE L+K ++++++ E E + ++ E EE G +
Sbjct: 133 RYEPLTSAAEEKKKKLLE------LKKTREREERLYSERHIELQRFKDYKELEESEQGLQ 186
Query: 187 EEGGGEEEEEEEEEEEEEEEEEE 209
EE EE E+ ++ E
Sbjct: 187 EEYTPSYAEEAVEDISRTDDFAE 209
>gnl|CDD|217930 pfam04152, Mre11_DNA_bind, Mre11 DNA-binding presumed domain. The
Mre11 complex is a multi-subunit nuclease that is
composed of Mre11, Rad50 and Nbs1/Xrs2, and is involved
in checkpoint signalling and DNA replication. Mre11 has
an intrinsic DNA-binding activity that is stimulated by
Rad50 on its own or in combination with Nbs1.
Length = 166
Score = 28.7 bits (65), Expect = 1.4
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 147 LVLTLRKKKKKKKKKKKEEEEEEEEEEEGGEEEEE 181
++ +KKK+K K KK EE++ +EEE EE +
Sbjct: 101 ILQFYKKKKRKTKTKKTEEDDPDEEELLPPEELDT 135
>gnl|CDD|237378 PRK13406, bchD, magnesium chelatase subunit D; Provisional.
Length = 584
Score = 29.6 bits (67), Expect = 1.4
Identities = 11/45 (24%), Positives = 19/45 (42%), Gaps = 5/45 (11%)
Query: 164 EEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEE 208
+ EEE E++ E+EEE+++ E+ EE
Sbjct: 260 APPQPPEEEPPPPPPPP-----EDDDDPPEDEEEQDDAEDRALEE 299
Score = 28.5 bits (64), Expect = 3.4
Identities = 10/44 (22%), Positives = 17/44 (38%), Gaps = 4/44 (9%)
Query: 167 EEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEE 210
+ EE E + E+EEE+++ E+ EE
Sbjct: 260 APPQPPEEEPPPPPP----PPEDDDDPPEDEEEQDDAEDRALEE 299
>gnl|CDD|215628 PLN03196, PLN03196, MOC1-like protein; Provisional.
Length = 487
Score = 29.3 bits (66), Expect = 1.5
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 178 EEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
E EE GG E E +EE++++++E
Sbjct: 445 EGEEMEPLFSMGGKLEMPGSESVSDEEDDDDDDE 478
Score = 27.0 bits (60), Expect = 9.7
Identities = 9/34 (26%), Positives = 16/34 (47%)
Query: 177 EEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEE 210
E EE G E E +EE++++++E
Sbjct: 445 EGEEMEPLFSMGGKLEMPGSESVSDEEDDDDDDE 478
>gnl|CDD|232948 TIGR00381, cdhD, CO dehydrogenase/acetyl-CoA synthase, delta
subunit. This is the small subunit of a heterodimer
which catalyzes the reaction CO + H2O + Acceptor = CO2 +
Reduced acceptor and is involved in the synthesis of
acetyl-CoA from CO2 and H2 [Energy metabolism,
Chemoautotrophy].
Length = 389
Score = 29.1 bits (65), Expect = 1.5
Identities = 27/98 (27%), Positives = 36/98 (36%), Gaps = 17/98 (17%)
Query: 54 RCCHHSPRLFQLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR 113
RC S L K+ A+ Y GH V I R K GL
Sbjct: 217 RCLLASANLDLDYEKIANAAKKY-GHVVLSWTIMDINMQKTLNRYLLK-----RGLMPRD 270
Query: 114 IVNEPTAAALAYGLD-----------KNLKGERNVKLP 140
IV +PT AL YG++ LKG+ ++ +P
Sbjct: 271 IVMDPTTCALGYGIEFSITNMERIRLSGLKGDTDLNMP 308
>gnl|CDD|235246 PRK04184, PRK04184, DNA topoisomerase VI subunit B; Validated.
Length = 535
Score = 29.1 bits (66), Expect = 1.7
Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 17/77 (22%)
Query: 151 LRKKKKKKKKKKKEE-----------------EEEEEEEEEGGEEEEEGGGGEEEGGGEE 193
L +K+K+++ KKK + E+EE + EE + EEE EE
Sbjct: 459 LSRKRKEEEAKKKAKTFEKYIPEIARKLAEILEKEEPDIEEVLAKLIGKKLEEEEVEEEE 518
Query: 194 EEEEEEEEEEEEEEEEE 210
EEE E + E++
Sbjct: 519 EEEAVVVESAKNYTEKD 535
>gnl|CDD|218003 pfam04281, Tom22, Mitochondrial import receptor subunit Tom22. The
mitochondrial protein translocase family, which is
responsible for movement of nuclear encoded pre-proteins
into mitochondria, is very complex with at least 19
components. These proteins include several chaperone
proteins, four proteins of the outer membrane
translocase (Tom) import receptor, five proteins of the
Tom channel complex, five proteins of the inner membrane
translocase (Tim) and three "motor" proteins. This
family represents the Tom22 proteins. The N terminal
region of Tom22 has been shown to have chaperone-like
activity, and the C terminal region faces the
intermembrane face.
Length = 136
Score = 28.4 bits (64), Expect = 1.7
Identities = 8/46 (17%), Positives = 20/46 (43%)
Query: 166 EEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
E E+E + + EE +E++ + + + ++ + E E
Sbjct: 5 TEVEDETFQEKPAAPKNLAQEESDDDDEDDTDTDSDISDDSDFENE 50
>gnl|CDD|217756 pfam03839, Sec62, Translocation protein Sec62.
Length = 217
Score = 29.0 bits (65), Expect = 1.7
Identities = 10/73 (13%), Positives = 31/73 (42%), Gaps = 5/73 (6%)
Query: 135 RNVKLPKMLEPLLVLTLRKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEE 194
R ++ + LE + + K K K + + +++ + + E +
Sbjct: 8 RAKRVVRALE-----SEKYKANKDKGNPEIYNKINSQDKAIEKFKLLIKAQMAERVKKLH 62
Query: 195 EEEEEEEEEEEEE 207
+E++EE+++ ++
Sbjct: 63 SQEKKEEKKKPKK 75
>gnl|CDD|218598 pfam05470, eIF-3c_N, Eukaryotic translation initiation factor 3
subunit 8 N-terminus. The largest of the mammalian
translation initiation factors, eIF3, consists of at
least eight subunits ranging in mass from 35 to 170 kDa.
eIF3 binds to the 40 S ribosome in an early step of
translation initiation and promotes the binding of
methionyl-tRNAi and mRNA.
Length = 593
Score = 29.4 bits (66), Expect = 1.7
Identities = 17/51 (33%), Positives = 32/51 (62%), Gaps = 2/51 (3%)
Query: 163 KEEEEEEEEEEEG--GEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
+EEEE+E+++++G E+E+E G G E E + +E++EE+E+
Sbjct: 140 EEEEEDEDDDDDGSDDEDEDEDGVGATEEVAASSESGVDRVKEDDEEDEDA 190
>gnl|CDD|100110 cd05832, Ribosomal_L12p, Ribosomal protein L12p. This subfamily
includes archaeal L12p, the protein that is functionally
equivalent to L7/L12 in bacteria and the P1 and P2
proteins in eukaryotes. L12p is homologous to P1 and P2
but is not homologous to bacterial L7/L12. It is located
in the L12 stalk, with proteins L10, L11, and 23S rRNA.
L12p is the only protein in the ribosome to occur as
multimers, always appearing as sets of dimers. Recent
data indicate that most archaeal species contain six
copies of L12p (three homodimers), while eukaryotes have
four copies (two heterodimers), and bacteria may have
four or six copies (two or three homodimers), depending
on the species. The organization of proteins within the
stalk has been characterized primarily in bacteria,
where L7/L12 forms either two or three homodimers and
each homodimer binds to the extended C-terminal helix of
L10. L7/L12 is attached to the ribosome through L10 and
is the only ribosomal protein that does not directly
interact with rRNA. Archaeal L12p is believed to
function in a similar fashion. However, hybrid ribosomes
containing the large subunit from E. coli with an
archaeal stalk are able to bind archaeal and eukaryotic
elongation factors but not bacterial elongation factors.
In several mesophilic and thermophilic archaeal species,
the binding of 23S rRNA to protein L11 and to the
L10/L12p pentameric complex was found to be
temperature-dependent and cooperative.
Length = 106
Score = 27.8 bits (62), Expect = 1.7
Identities = 15/24 (62%), Positives = 20/24 (83%)
Query: 186 EEEGGGEEEEEEEEEEEEEEEEEE 209
EE E+EEE+++EEE+EEEEEE
Sbjct: 74 AEEKAEEKEEEKKKEEEKEEEEEE 97
Score = 27.8 bits (62), Expect = 1.8
Identities = 15/25 (60%), Positives = 20/25 (80%)
Query: 186 EEEGGGEEEEEEEEEEEEEEEEEEE 210
E EE+EEE+++EEE+EEEEEE
Sbjct: 73 AAEEKAEEKEEEKKKEEEKEEEEEE 97
Score = 27.1 bits (60), Expect = 3.5
Identities = 13/29 (44%), Positives = 21/29 (72%)
Query: 155 KKKKKKKKKEEEEEEEEEEEGGEEEEEGG 183
++K ++KEEE+++EEE+E EEE G
Sbjct: 73 AAEEKAEEKEEEKKKEEEKEEEEEEALAG 101
Score = 27.1 bits (60), Expect = 3.8
Identities = 14/20 (70%), Positives = 19/20 (95%)
Query: 192 EEEEEEEEEEEEEEEEEEEE 211
EE+EEE+++EEE+EEEEEE
Sbjct: 78 AEEKEEEKKKEEEKEEEEEE 97
Score = 26.7 bits (59), Expect = 4.1
Identities = 14/29 (48%), Positives = 21/29 (72%)
Query: 157 KKKKKKKEEEEEEEEEEEGGEEEEEGGGG 185
++K +E+EEE+++EEE EEEEE G
Sbjct: 73 AAEEKAEEKEEEKKKEEEKEEEEEEALAG 101
Score = 26.7 bits (59), Expect = 4.3
Identities = 14/24 (58%), Positives = 20/24 (83%)
Query: 185 GEEEGGGEEEEEEEEEEEEEEEEE 208
EE+ +EEE+++EEE+EEEEEE
Sbjct: 74 AEEKAEEKEEEKKKEEEKEEEEEE 97
Score = 26.7 bits (59), Expect = 5.0
Identities = 12/29 (41%), Positives = 21/29 (72%)
Query: 156 KKKKKKKKEEEEEEEEEEEGGEEEEEGGG 184
++K +++EEE+++EEE+ EEEE G
Sbjct: 73 AAEEKAEEKEEEKKKEEEKEEEEEEALAG 101
Score = 26.7 bits (59), Expect = 5.2
Identities = 13/25 (52%), Positives = 21/25 (84%)
Query: 153 KKKKKKKKKKKEEEEEEEEEEEGGE 177
+K ++K+++KK+EEE+EEEEEE
Sbjct: 76 EKAEEKEEEKKKEEEKEEEEEEALA 100
Score = 26.3 bits (58), Expect = 7.1
Identities = 13/26 (50%), Positives = 19/26 (73%)
Query: 186 EEEGGGEEEEEEEEEEEEEEEEEEEE 211
+ EE+EEE+++EEE+EEEEE
Sbjct: 71 AAAAEEKAEEKEEEKKKEEEKEEEEE 96
>gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2. This model
describes a tightly conserved subfamily of the larger
family of sugar (and other) transporters described by
PFAM model pfam00083. Members of this subfamily include
closely related forms SV2A and SV2B of synaptic vesicle
protein from vertebrates and a more distantly related
homolog (below trusted cutoff) from Drosophila
melanogaster. Members are predicted to have two sets of
six transmembrane helices.
Length = 742
Score = 29.2 bits (65), Expect = 1.7
Identities = 12/48 (25%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Query: 164 EEEEEEEEEEEGGE--EEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEE 209
E+E+++++ + E EEEG + E +E++E E E
Sbjct: 50 EDEDDDDDFPAPADGYSRGEAADDEEEGEASSDATEGHDEDDEIYEGE 97
>gnl|CDD|236277 PRK08493, PRK08493, NADH dehydrogenase subunit G; Validated.
Length = 819
Score = 29.3 bits (66), Expect = 1.8
Identities = 23/104 (22%), Positives = 41/104 (39%), Gaps = 5/104 (4%)
Query: 110 NVMRIVNEPTA--AALAYGLDKNLKGERNVKLPKMLEPLLVLTLRKKKKKKKKKKKEEEE 167
N I +E A L + L K L+ E + K LE +++ ++ +E+
Sbjct: 420 NFFCITHEVGAEEIILYFLLKKFLEEE---AILKSLEEFKQSIVKEAALSILEEIREKVL 476
Query: 168 EEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
E+ E+ +EE + ++ E + EE EE E
Sbjct: 477 EQAEQGCENQEEVKKEVPKKVKKIPEVDTYLLLEELGINEETYE 520
>gnl|CDD|235594 PRK05761, PRK05761, DNA polymerase I; Reviewed.
Length = 787
Score = 29.3 bits (66), Expect = 1.8
Identities = 12/37 (32%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Query: 139 LPKMLEPLLVLTLRKKKKKKKKKKKEEEEEEEEEEEG 175
L +L LL R K KKK K +EE +
Sbjct: 473 LTSVLVGLL-RDFRVKIYKKKAKDPNLDEERRAWYDV 508
>gnl|CDD|233141 TIGR00820, zip, ZIP zinc/iron transport family. The Zinc
(Zn2+)-Iron (Fe2+) Permease (ZIP) Family (TC
2.A.5)Members of the ZIP family consist of proteins with
eight putative transmembrane spanners. They are derived
from animals, plants and yeast. Theycomprise a diverse
family, with several paralogues in any one organism
(e.g., at least five in Caenorabditis elegans, at least
five in Arabidopsis thaliana and two inSaccharomyces
cervisiae. The two S. cerevisiae proteins, Zrt1 and
Zrt2, both probably transport Zn2+ with high
specificity, but Zrt1 transports Zn2+ with ten-fold
higher affinitythan Zrt2. Some members of the ZIP family
have been shown to transport Zn2+ while others transport
Fe2+, and at least one transports a range of metal ions.
The energy source fortransport has not been
characterized, but these systems probably function as
secondary carriers [Transport and binding proteins,
Cations and iron carrying compounds].
Length = 324
Score = 28.9 bits (65), Expect = 2.0
Identities = 10/46 (21%), Positives = 17/46 (36%)
Query: 158 KKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEE 203
++K K + +E + GEE GG E+ E +
Sbjct: 119 ERKHGKGDHGSKEIKVGDGEEGTAGGTKHGHEYYEDHVHTNSEVVQ 164
>gnl|CDD|235672 PRK06012, flhA, flagellar biosynthesis protein FlhA; Validated.
Length = 697
Score = 28.9 bits (66), Expect = 2.1
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 156 KKKKKKKKEEEEEEEEEEEGGEEEEE 181
+K++KK E EE EEEE E EEE
Sbjct: 327 RKREKKAAELAAEEAEEEEAAEPEEE 352
Score = 27.8 bits (63), Expect = 5.3
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 155 KKKKKKKKKEEEEEEEEEEEGGEEEEE 181
+K++KK + EE EEEE EEE
Sbjct: 327 RKREKKAAELAAEEAEEEEAAEPEEES 353
>gnl|CDD|216337 pfam01159, Ribosomal_L6e, Ribosomal protein L6e.
Length = 108
Score = 27.6 bits (62), Expect = 2.1
Identities = 12/22 (54%), Positives = 17/22 (77%)
Query: 153 KKKKKKKKKKKEEEEEEEEEEE 174
K++KKKKKKK E E E++E+
Sbjct: 38 KREKKKKKKKSEGEFFAEKKEK 59
>gnl|CDD|221250 pfam11831, Myb_Cef, pre-mRNA splicing factor component. This
family is a region of the Myb-Related Cdc5p/Cef1
proteins, in fungi, and is part of the pre-mRNA splicing
factor complex.
Length = 363
Score = 28.9 bits (65), Expect = 2.2
Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Query: 141 KMLEPLLVLTLRKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEE 200
K+ E L+L+ K K E E E EEEE EE EE EE + + +
Sbjct: 121 KLREDEAKLSLKSGLASLPKPKNEFELELPEEEE--EEPEEMEEELEEDAADRDARKRAA 178
Query: 201 EEEEEEEE 208
EE +E+EE
Sbjct: 179 EEAKEQEE 186
Score = 28.1 bits (63), Expect = 3.6
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 10/48 (20%)
Query: 164 EEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
E EEEEEE E EEE E E+ + + + EE +E+E
Sbjct: 148 ELPEEEEEEPEEMEEELE----------EDAADRDARKRAAEEAKEQE 185
>gnl|CDD|222927 PHA02774, PHA02774, E1; Provisional.
Length = 613
Score = 28.7 bits (65), Expect = 2.2
Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 3/50 (6%)
Query: 155 KKKKKKKKKEEEE---EEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEE 201
+KK K++ EE++ EEE + EE G GG E +
Sbjct: 104 RKKAKRRLFEEQDSGLGNSLEEESTDVVEEEGVESSGGGEGGSETGQGGG 153
Score = 28.7 bits (65), Expect = 2.5
Identities = 13/51 (25%), Positives = 22/51 (43%)
Query: 152 RKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEE 202
+KK K++ ++++ EE + E G E GGGE E +
Sbjct: 103 PRKKAKRRLFEEQDSGLGNSLEEESTDVVEEEGVESSGGGEGGSETGQGGG 153
>gnl|CDD|222800 PHA00458, PHA00458, single-stranded DNA-binding protein.
Length = 233
Score = 28.6 bits (64), Expect = 2.2
Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 5/44 (11%)
Query: 172 EEEGGEEEEEGG-----GGEEEGGGEEEEEEEEEEEEEEEEEEE 210
E++ +E+EE G + EEE +E++EEE EE+E+ +
Sbjct: 189 EDDWADEDEEDGYVASEAKARKPQDEEEWDEDDEEESEEDEDGD 232
Score = 28.2 bits (63), Expect = 2.7
Identities = 16/41 (39%), Positives = 27/41 (65%)
Query: 171 EEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
E++ E+EE+G E + ++EEE +E++EEE EE+E
Sbjct: 189 EDDWADEDEEDGYVASEAKARKPQDEEEWDEDDEEESEEDE 229
Score = 27.8 bits (62), Expect = 3.3
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 166 EEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEE 204
+E+EE+ E + EEE ++EEE EE+E+ +
Sbjct: 194 DEDEEDGYVASEAKARKPQDEEEWDEDDEEESEEDEDGD 232
Score = 27.5 bits (61), Expect = 5.5
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 170 EEEEEGGEEEEEGG---GGEEEGGGEEEEEEEEEEEEEE 205
+E+EE G E +EE E++EEE EE+E+ +
Sbjct: 194 DEDEEDGYVASEAKARKPQDEEEWDEDDEEESEEDEDGD 232
>gnl|CDD|240321 PTZ00230, PTZ00230, variable surface protein Vir7; Provisional.
Length = 364
Score = 28.7 bits (64), Expect = 2.3
Identities = 13/48 (27%), Positives = 19/48 (39%)
Query: 159 KKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEE 206
K K +E + + ++ EEG E E G E EE +E
Sbjct: 206 KCKLEETDPQSKQLEEGDEGERVQQPTLTAIPGLEGEESLSVPPSDEX 253
>gnl|CDD|184403 PRK13929, PRK13929, rod-share determining protein MreBH;
Provisional.
Length = 335
Score = 28.7 bits (64), Expect = 2.4
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 65 LLTKMKETAEAYLGHSVR--DAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAA 122
LL ++ + A +G + R + V+ P+ +R+A DA G + ++ EP AAA
Sbjct: 80 LLKQIMKKAGKNIGMTFRKPNVVVCTPSGSTAVERRAISDAVKNCGAKNVHLIEEPVAAA 139
Query: 123 LAYGL 127
+ L
Sbjct: 140 IGADL 144
>gnl|CDD|217451 pfam03249, TSA, Type specific antigen. There are several antigenic
variants in Rickettsia tsutsugamushi, and a
type-specific antigen (TSA) of 56-kilodaltons located on
the rickettsial surface is responsible for the
variation. TSA proteins are probably integral membrane
proteins.
Length = 502
Score = 28.7 bits (64), Expect = 2.4
Identities = 34/146 (23%), Positives = 64/146 (43%), Gaps = 23/146 (15%)
Query: 62 LFQLLTKMKETAEAYLGHSVRDAV---ITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEP 118
L +L +++E+ + Y+G++ + + +P + + A A A E
Sbjct: 277 LNDVLEELRESFDGYIGNAFANQIQLNFVIPQQAQQQGQGQQQQAQATA--------QEA 328
Query: 119 TAAALAYGLDKNLKGERNVKLPKMLEPLLVLTLRKKKKKKKKKKKEEEEEEEEEEEGGEE 178
AAA L+ N E+ ++L K L L R KK +K ++EE+ +GG
Sbjct: 329 AAAAAVRLLNGN---EQIIQLYKDLVKLQ----RHAGIKKAMEKLAAQQEEDAGNQGG-- 379
Query: 179 EEEGGGGEEEGGGEEEEEEEEEEEEE 204
G +++G E+ +E + +E E
Sbjct: 380 ---GDCKKKQGASEKSKEGGKGKETE 402
>gnl|CDD|100111 cd05833, Ribosomal_P2, Ribosomal protein P2. This subfamily
represents the eukaryotic large ribosomal protein P2.
Eukaryotic P1 and P2 are functionally equivalent to the
bacterial protein L7/L12, but are not homologous to
L7/L12. P2 is located in the L12 stalk, with proteins
P1, P0, L11, and 28S rRNA. P1 and P2 are the only
proteins in the ribosome to occur as multimers, always
appearing as sets of heterodimers. Recent data indicate
that eukaryotes have four copies (two heterodimers),
while most archaeal species contain six copies of L12p
(three homodimers). Bacteria may have four or six copies
of L7/L12 (two or three homodimers) depending on the
species. Experiments using S. cerevisiae P1 and P2
indicate that P1 proteins are positioned more internally
with limited reactivity in the C-terminal domains, while
P2 proteins seem to be more externally located and are
more likely to interact with other cellular components.
In lower eukaryotes, P1 and P2 are further subdivided
into P1A, P1B, P2A, and P2B, which form P1A/P2B and
P1B/P2A heterodimers. Some plants have a third
P-protein, called P3, which is not homologous to P1 and
P2. In humans, P1 and P2 are strongly autoimmunogenic.
They play a significant role in the etiology and
pathogenesis of systemic lupus erythema (SLE). In
addition, the ribosome-inactivating protein
trichosanthin (TCS) interacts with human P0, P1, and P2,
with its primary binding site in the C-terminal region
of P2. TCS inactivates the ribosome by depurinating a
specific adenine in the sarcin-ricin loop of 28S rRNA.
Length = 109
Score = 27.6 bits (62), Expect = 2.4
Identities = 7/26 (26%), Positives = 13/26 (50%)
Query: 182 GGGGEEEGGGEEEEEEEEEEEEEEEE 207
++EE++EE EEE ++
Sbjct: 76 AAAAAAAAAAAKKEEKKEESEEESDD 101
Score = 26.5 bits (59), Expect = 5.2
Identities = 7/27 (25%), Positives = 13/27 (48%)
Query: 182 GGGGEEEGGGEEEEEEEEEEEEEEEEE 208
++EE++EE EEE ++
Sbjct: 75 AAAAAAAAAAAAKKEEKKEESEEESDD 101
Score = 26.5 bits (59), Expect = 5.8
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 154 KKKKKKKKKKEEEEEEEEEEEG 175
KK++KKEE EEE +++ G
Sbjct: 83 AAAAKKEEKKEESEEESDDDMG 104
Score = 25.7 bits (57), Expect = 8.7
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 189 GGGEEEEEEEEEEEEEEEEEEEE 211
++EE++EE EEE +
Sbjct: 78 AAAAAAAAAKKEEKKEESEEESD 100
Score = 25.7 bits (57), Expect = 8.9
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 189 GGGEEEEEEEEEEEEEEEEEEEE 211
++EE++EE EEE ++
Sbjct: 79 AAAAAAAAKKEEKKEESEEESDD 101
>gnl|CDD|234352 TIGR03779, Bac_Flav_CT_M, Bacteroides conjugative transposon TraM
protein. Members of this protein family are designated
TraM and are found in a proposed transfer region of a
class of conjugative transposon found in the Bacteroides
lineage [Cellular processes, DNA transformation].
Length = 410
Score = 28.5 bits (64), Expect = 2.5
Identities = 17/79 (21%), Positives = 25/79 (31%), Gaps = 17/79 (21%)
Query: 150 TLRKKKKKKKKKKKEEEEEEEEEEEGGEE-----------------EEEGGGGEEEGGGE 192
+ K K+ + + +EE +E E E G E +
Sbjct: 84 SFEKSDKESQDYSSSDSGFDEEPDEPAETAGSLRPIRSSAAAYRDINRELGSFYEYPKTD 143
Query: 193 EEEEEEEEEEEEEEEEEEE 211
EE+E E EE E E
Sbjct: 144 EEKELLREVEELESRLATE 162
>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain. This domain is
found at the N terminus of SMC proteins. The SMC
(structural maintenance of chromosomes) superfamily
proteins have ATP-binding domains at the N- and
C-termini, and two extended coiled-coil domains
separated by a hinge in the middle. The eukaryotic SMC
proteins form two kind of heterodimers: the SMC1/SMC3
and the SMC2/SMC4 types. These heterodimers constitute
an essential part of higher order complexes, which are
involved in chromatin and DNA dynamics. This family also
includes the RecF and RecN proteins that are involved in
DNA metabolism and recombination.
Length = 1162
Score = 28.8 bits (64), Expect = 2.5
Identities = 27/85 (31%), Positives = 45/85 (52%)
Query: 127 LDKNLKGERNVKLPKMLEPLLVLTLRKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGE 186
++ K E ++K ++ E K +++K++K K +EEE EE +EE E E
Sbjct: 762 EEEEEKSELSLKEKELAEEEEKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEE 821
Query: 187 EEGGGEEEEEEEEEEEEEEEEEEEE 211
+ +EE+ +EEE EE E +EE
Sbjct: 822 QLLIEQEEKIKEEELEELALELKEE 846
Score = 28.8 bits (64), Expect = 2.7
Identities = 23/66 (34%), Positives = 37/66 (56%)
Query: 146 LLVLTLRKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEE 205
L + K++K K ++++ EEE +EE EEE E+E +EEE EE E +E
Sbjct: 786 KLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKE 845
Query: 206 EEEEEE 211
E++ E+
Sbjct: 846 EQKLEK 851
Score = 27.2 bits (60), Expect = 7.4
Identities = 22/74 (29%), Positives = 37/74 (50%)
Query: 138 KLPKMLEPLLVLTLRKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEE 197
+L + E L + ++K++K K ++EE EEE + E E E + +EEE
Sbjct: 776 ELAEEEEKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEE 835
Query: 198 EEEEEEEEEEEEEE 211
EE E +EE++
Sbjct: 836 LEELALELKEEQKL 849
>gnl|CDD|218454 pfam05132, RNA_pol_Rpc4, RNA polymerase III RPC4. Specific subunit
for Pol III, the tRNA specific polymerase.
Length = 131
Score = 27.6 bits (62), Expect = 2.6
Identities = 16/66 (24%), Positives = 27/66 (40%), Gaps = 8/66 (12%)
Query: 138 KLPKMLEPLLVLTLRKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEE 197
+LP +L L K + K +EE + E+ E GE++E E E++
Sbjct: 9 QLPPVLPGL--------KPPAEVKPTKEETVKTEQAEDGEKKESKKESSAEETAEDKPCT 60
Query: 198 EEEEEE 203
+ E
Sbjct: 61 LRDLPE 66
>gnl|CDD|218140 pfam04547, Anoctamin, Calcium-activated chloride channel. The
family carries eight putative transmembrane domains,
and, although it has no similarity to other known
channel proteins, it is clearly a calcium-activated
ionic channel. It is expressed in various secretory
epithelia, the retina and sensory neurons, and mediates
receptor-activated chloride currents in diverse
physiological processes.
Length = 449
Score = 28.7 bits (65), Expect = 2.6
Identities = 16/35 (45%), Positives = 21/35 (60%)
Query: 147 LVLTLRKKKKKKKKKKKEEEEEEEEEEEGGEEEEE 181
+ +KKK KKKK+KE++ EE E E E E E
Sbjct: 268 YLKKKIRKKKIKKKKEKEKKPEENEILERIENESE 302
Score = 27.9 bits (63), Expect = 3.6
Identities = 15/29 (51%), Positives = 20/29 (68%)
Query: 145 PLLVLTLRKKKKKKKKKKKEEEEEEEEEE 173
P L +RKKK KKKK+K+++ EE E E
Sbjct: 267 PYLKKKIRKKKIKKKKEKEKKPEENEILE 295
>gnl|CDD|173965 cd08045, TAF4, TATA Binding Protein (TBP) Associated Factor 4
(TAF4) is one of several TAFs that bind TBP and is
involved in forming Transcription Factor IID (TFIID)
complex. The TATA Binding Protein (TBP) Associated
Factor 4 (TAF4) is one of several TAFs that bind TBP and
are involved in forming the Transcription Factor IID
(TFIID) complex. TFIID is one of seven General
Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE,
TFIIF, and TFIID) that are involved in accurate
initiation of transcription by RNA polymerase II in
eukaryote. TFIID plays an important role in the
recognition of promoter DNA and assembly of the
pre-initiation complex. TFIID complex is composed of the
TBP and at least 13 TAFs. TAFs from various species were
originally named by their predicted molecular weight or
their electrophoretic mobility in polyacrylamide gels. A
new, unified nomenclature for the pol II TAFs has been
suggested to show the relationship between TAF orthologs
and paralogs. Several hypotheses are proposed for TAFs
functions such as serving as activator-binding sites,
core-promoter recognition or a role in essential
catalytic activity. Each TAF, with the help of a
specific activator, is required only for the expression
of subset of genes and is not universally involved for
transcription as are GTFs. In yeast and human cells,
TAFs have been found as components of other complexes
besides TFIID. Several TAFs interact via histone-fold
(HFD) motifs; HFD is the interaction motif involved in
heterodimerization of the core histones and their
assembly into nucleosome octamers. The minimal HFD
contains three alpha-helices linked by two loops and is
found in core histones, TAFS and many other
transcription factors. TFIID has a histone octamer-like
substructure. TAF4 domain interacts with TAF12 and makes
a novel histone-like heterodimer that binds DNA and has
a core promoter function of a subset of genes.
Length = 212
Score = 28.1 bits (63), Expect = 2.7
Identities = 15/54 (27%), Positives = 31/54 (57%)
Query: 151 LRKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEE 204
+RK+ + ++ ++EEEE+ +EEE E+ ++ +E ++EE+EE
Sbjct: 112 VRKQLRFLEQLEREEEEKRDEEERERLLRAAKSRSEQSRLKQKAKEMQKEEDEE 165
Score = 27.3 bits (61), Expect = 6.0
Identities = 15/53 (28%), Positives = 29/53 (54%)
Query: 154 KKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEE 206
+K+ + ++ E EEEE+ +EE E E +++ +E ++EE+EE
Sbjct: 113 RKQLRFLEQLEREEEEKRDEEERERLLRAAKSRSEQSRLKQKAKEMQKEEDEE 165
>gnl|CDD|234504 TIGR04216, halo_surf_glyco, major cell surface glycoprotein.
Members of this family are the S-layer-forming
halobacterial major cell surface glycoprotein. The
highest scores below model cutoffs are fragmentary
paralogs to actual members of the family. Modifications
include at N-linked and O-linked glycosylation, a
C-terminal diphytanylglyceryl modification, and probable
cleavage of the PGF-CTERM tail.
Length = 782
Score = 28.7 bits (64), Expect = 2.7
Identities = 12/46 (26%), Positives = 14/46 (30%)
Query: 166 EEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
EE E + E+ G E E E EE EE
Sbjct: 709 EETERPDTTTSEDPTTTTTPTTTGPEETTETAEPTTTTEEPTEETT 754
>gnl|CDD|184538 PRK14149, PRK14149, heat shock protein GrpE; Provisional.
Length = 191
Score = 27.9 bits (62), Expect = 2.8
Identities = 15/57 (26%), Positives = 29/57 (50%)
Query: 155 KKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
K + ++ ++E E EE +E G E++ E+E E +E+ E + +E E+
Sbjct: 2 KDEHNQEHDHLSQKEPESEEKACACKEQQGEEKQEASEKEGEIKEDFELKYKEMHEK 58
>gnl|CDD|219240 pfam06957, COPI_C, Coatomer (COPI) alpha subunit C-terminus. This
family represents the C-terminus (approximately 500
residues) of the eukaryotic coatomer alpha subunit.
Coatomer (COPI) is a large cytosolic protein complex
which forms a coat around vesicles budding from the
Golgi apparatus. Such coatomer-coated vesicles have been
proposed to play a role in many distinct steps of
intracellular transport. Note that many family members
also contain the pfam04053 domain.
Length = 421
Score = 28.3 bits (63), Expect = 2.8
Identities = 10/43 (23%), Positives = 20/43 (46%)
Query: 166 EEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEE 208
+ ++ GE+ + G + GE+ ++EE E +EE
Sbjct: 32 DFAVMGGDDWGEDADLGLDEDGYLEGEDGLLDDEEGPEGGDEE 74
Score = 27.9 bits (62), Expect = 4.3
Identities = 13/41 (31%), Positives = 23/41 (56%)
Query: 165 EEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEE 205
+E+ E E+G ++EEG G +E GG + E++ E +
Sbjct: 50 DEDGYLEGEDGLLDDEEGPEGGDEEGGWDVEDDLVLPPELD 90
>gnl|CDD|227504 COG5177, COG5177, Uncharacterized conserved protein [Function
unknown].
Length = 769
Score = 28.5 bits (63), Expect = 2.9
Identities = 14/49 (28%), Positives = 24/49 (48%)
Query: 163 KEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
+E ++++ E + E G+EE ++ E EE EEEE + E
Sbjct: 406 EESTMSAIDDDDPKENDNEEVAGDEESAIDDNEGFEELSPEEEERQLRE 454
Score = 27.7 bits (61), Expect = 4.8
Identities = 14/48 (29%), Positives = 25/48 (52%)
Query: 163 KEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEE 210
K E+EEEE+ + +EE +++ E + EE +EE ++ E
Sbjct: 391 KWAEDEEEEDGQCNDEESTMSAIDDDDPKENDNEEVAGDEESAIDDNE 438
Score = 27.4 bits (60), Expect = 8.2
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 164 EEEEEEEEEEEGGEEEE--EGGGGEEEGGGEEEEEEEEEEEEEEEEEEE 210
++ +E + EE G+EE + G EE EEEE + E + E+E+ E
Sbjct: 416 DDPKENDNEEVAGDEESAIDDNEGFEELSPEEEERQLREFRDMEKEDRE 464
Score = 27.0 bits (59), Expect = 8.8
Identities = 23/86 (26%), Positives = 31/86 (36%), Gaps = 14/86 (16%)
Query: 139 LPKMLEPLLVLTLRKKKKKKKKKKKEEEEEEEEEEEGGEE--------------EEEGGG 184
LP + + K + K E+EEEE+ + E EE G
Sbjct: 369 LPGREQTSKKAAVPKGTSFYQAKWAEDEEEEDGQCNDEESTMSAIDDDDPKENDNEEVAG 428
Query: 185 GEEEGGGEEEEEEEEEEEEEEEEEEE 210
EE + E EE EEEE + E
Sbjct: 429 DEESAIDDNEGFEELSPEEEERQLRE 454
>gnl|CDD|223052 PHA03346, PHA03346, US22 family homolog; Provisional.
Length = 520
Score = 28.6 bits (64), Expect = 2.9
Identities = 10/57 (17%), Positives = 28/57 (49%)
Query: 151 LRKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEE 207
LR + ++++ + E E+E + GG ++++E ++E++++ E
Sbjct: 385 LRGEFAERRRPRGPPENEDEADGGGGLAPPPEPPRPPPPPFPDDDDEGDDEDDDDWE 441
Score = 27.4 bits (61), Expect = 6.8
Identities = 8/50 (16%), Positives = 24/50 (48%)
Query: 159 KKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEE 208
+++ + E E+E + GG ++++E ++E++++ E
Sbjct: 392 RRRPRGPPENEDEADGGGGLAPPPEPPRPPPPPFPDDDDEGDDEDDDDWE 441
>gnl|CDD|217286 pfam02919, Topoisom_I_N, Eukaryotic DNA topoisomerase I, DNA
binding fragment. Topoisomerase I promotes the
relaxation of DNA superhelical tension by introducing a
transient single-stranded break in duplex DNA and are
vital for the processes of replication, transcription,
and recombination. This family may be more than one
structural domain.
Length = 215
Score = 27.9 bits (63), Expect = 2.9
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 151 LRKKKKKKKKKKKEEEEEEEEEEEGGEEE 179
+K+KKK KEE++ +EE++ EE
Sbjct: 95 FEAEKEKKKAMSKEEKKAIKEEKDKLEEP 123
>gnl|CDD|182840 PRK10921, PRK10921, twin-arginine protein translocation system
subunit TatC; Provisional.
Length = 258
Score = 28.2 bits (63), Expect = 3.0
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 159 KKKKKEEEEEEEEEEEGGEE 178
K +++EEE + E E E EE
Sbjct: 239 KGRRREEENDAEAESEKTEE 258
Score = 28.2 bits (63), Expect = 3.3
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 189 GGGEEEEEEEEEEEEEEEEEE 209
G G EEE + E E E+ EE
Sbjct: 238 GKGRRREEENDAEAESEKTEE 258
>gnl|CDD|218303 pfam04874, Mak16, Mak16 protein C-terminal region. The precise
function of this eukaryotic protein family is unknown.
The yeast orthologues have been implicated in cell cycle
progression and biogenesis of 60S ribosomal subunits.
The Schistosoma mansoni Mak16 has been shown to target
protein transport to the nucleolus.
Length = 97
Score = 27.1 bits (60), Expect = 3.1
Identities = 24/45 (53%), Positives = 28/45 (62%)
Query: 160 KKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEE 204
KK E EE EE +EE EEEEE GE E ++EE EEE E+ E
Sbjct: 52 KKALEAEESEENDEEEEEEEEEEDEGEIEYVSDDEELEEEIEDLE 96
Score = 26.8 bits (59), Expect = 4.0
Identities = 27/81 (33%), Positives = 40/81 (49%)
Query: 121 AALAYGLDKNLKGERNVKLPKMLEPLLVLTLRKKKKKKKKKKKEEEEEEEEEEEGGEEEE 180
A +A L+K ++ E +L + + + KK + +E EE +EEEEE EEE+
Sbjct: 16 ALVAAKLEKTIEKELLERLKQGTYGDEPYNISQSAFKKALEAEESEENDEEEEEEEEEED 75
Query: 181 EGGGGEEEGGGEEEEEEEEEE 201
EG E EEE E+ E
Sbjct: 76 EGEIEYVSDDEELEEEIEDLE 96
Score = 26.4 bits (58), Expect = 4.8
Identities = 21/45 (46%), Positives = 25/45 (55%)
Query: 162 KKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEE 206
KK E EE EE + EEEEE E E ++EE EEE E+ E
Sbjct: 52 KKALEAEESEENDEEEEEEEEEEDEGEIEYVSDDEELEEEIEDLE 96
>gnl|CDD|204414 pfam10211, Ax_dynein_light, Axonemal dynein light chain. Axonemal
dynein light chain proteins play a dynamic role in
flagellar and cilia motility. Eukaryotic cilia and
flagella are complex organelles consisting of a core
structure, the axoneme, which is composed of nine
microtubule doublets forming a cylinder that surrounds a
pair of central singlet microtubules. This
ultra-structural arrangement seems to be one of the most
stable micro-tubular assemblies known and is responsible
for the flagellar and ciliary movement of a large number
of organisms ranging from protozoan to mammals. This
light chain interacts directly with the N-terminal half
of the heavy chains.
Length = 189
Score = 27.9 bits (63), Expect = 3.1
Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 21/86 (24%)
Query: 122 ALAYGLDKNLKGERNVKLPKMLEPLLVLTLRKKKKKKKKKKKEEEEEEEEEEEGGEEEEE 181
++A+G+ K L+ E+ E L ++ KK +++K+E E+ E E E E+
Sbjct: 107 SVAFGMRKALQAEQG-----KSE------LEQEIKKLEEEKEELEKRVAELEAKLEAIEK 155
Query: 182 GGGGEEEGGGEEEEEEEEEEEEEEEE 207
EEEE + EE+ +E
Sbjct: 156 ----------REEEERQIEEKRHADE 171
>gnl|CDD|227446 COG5116, RPN2, 26S proteasome regulatory complex component
[Posttranslational modification, protein turnover,
chaperones].
Length = 926
Score = 28.4 bits (63), Expect = 3.1
Identities = 11/56 (19%), Positives = 21/56 (37%)
Query: 144 EPLLVLTLRKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEE 199
++ T K + K+K KE+ ++E + E G EE+ +
Sbjct: 783 NTAVLSTTIKAAARAKQKPKEKGPNDKEIKIESPSVETEGERCTIKQREEKGIDAP 838
Score = 27.2 bits (60), Expect = 7.7
Identities = 11/55 (20%), Positives = 21/55 (38%)
Query: 146 LLVLTLRKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEE 200
VL+ K + K+K +E+ ++E + E G EE+ +
Sbjct: 784 TAVLSTTIKAAARAKQKPKEKGPNDKEIKIESPSVETEGERCTIKQREEKGIDAP 838
Score = 26.8 bits (59), Expect = 10.0
Identities = 10/47 (21%), Positives = 19/47 (40%)
Query: 155 KKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEE 201
K + K+K +E+ ++E E GE + EE+ +
Sbjct: 792 KAAARAKQKPKEKGPNDKEIKIESPSVETEGERCTIKQREEKGIDAP 838
>gnl|CDD|223068 PHA03384, PHA03384, early DNA-binding protein E2A; Provisional.
Length = 445
Score = 28.1 bits (63), Expect = 3.2
Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 5/68 (7%)
Query: 149 LTLRKKKKKKKKKKKEEEEEEEEEEEGGEEEEEG-----GGGEEEGGGEEEEEEEEEEEE 203
L + KKK +++ EEEEEEE E G G+ +EE++
Sbjct: 20 LEPPELPPKKKGRRRVSPVEEEEEEEEAEVVAVGFSYPPVRISRGKDGKRPVRPLKEEKD 79
Query: 204 EEEEEEEE 211
E++ E
Sbjct: 80 SEKKASTE 87
>gnl|CDD|227447 COG5117, NOC3, Protein involved in the nuclear export of
pre-ribosomes [Translation, ribosomal structure and
biogenesis / Intracellular trafficking and secretion].
Length = 657
Score = 28.4 bits (63), Expect = 3.2
Identities = 10/53 (18%), Positives = 20/53 (37%)
Query: 154 KKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEE 206
++ E E E E + ++E EE E +++ + E+E
Sbjct: 86 ADVNNGEEFLSESESEASLEIDSDIKDEKQKSLEEQKIAPEIPVKQQIDSEKE 138
>gnl|CDD|240272 PTZ00109, PTZ00109, DNA gyrase subunit b; Provisional.
Length = 903
Score = 28.3 bits (63), Expect = 3.2
Identities = 12/52 (23%), Positives = 18/52 (34%)
Query: 157 KKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEE 208
K K +E EE G + E+E + E +E E + E
Sbjct: 759 KLLNKDYSSKETTRSVEEKGNAPDLDNEYEDEKLDNKNMRENNVDEVELKTE 810
>gnl|CDD|240402 PTZ00399, PTZ00399, cysteinyl-tRNA-synthetase; Provisional.
Length = 651
Score = 28.5 bits (64), Expect = 3.3
Identities = 9/38 (23%), Positives = 24/38 (63%)
Query: 144 EPLLVLTLRKKKKKKKKKKKEEEEEEEEEEEGGEEEEE 181
E L K+ K++K+ ++ +++EE++++ E+ E+
Sbjct: 551 EELQREKEEKEALKEQKRLRKLKKQEEKKKKELEKLEK 588
Score = 28.1 bits (63), Expect = 4.1
Identities = 8/40 (20%), Positives = 25/40 (62%)
Query: 141 KMLEPLLVLTLRKKKKKKKKKKKEEEEEEEEEEEGGEEEE 180
K+ + + +++K+ K++K+ + +++EE++ E E+
Sbjct: 546 KLDDKEELQREKEEKEALKEQKRLRKLKKQEEKKKKELEK 585
>gnl|CDD|240413 PTZ00423, PTZ00423, glideosome-associated protein 45; Provisional.
Length = 193
Score = 27.8 bits (61), Expect = 3.3
Identities = 21/59 (35%), Positives = 34/59 (57%)
Query: 153 KKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
+K K K+ K+++ +E E E+ E EE E+ E E++ EE E+EEE EE++
Sbjct: 6 RKNKAKEPKRRDIDELAEREKLKKEVEEIPEQKPEDIVEELEDQPEEPPEQEEENEEQK 64
>gnl|CDD|236410 PRK09202, nusA, transcription elongation factor NusA; Validated.
Length = 470
Score = 28.3 bits (64), Expect = 3.3
Identities = 11/62 (17%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 151 LRKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEE-EEEEEEEEEEE 209
++ + + ++E+ ++ EG + E E+ E+ E+ +E + E +E
Sbjct: 409 AKEALETEALAQEEKLADDLLSLEGLDRELAFKLAEKGIKTLEDLAEQAVDELIDIEGDE 468
Query: 210 EE 211
E+
Sbjct: 469 EK 470
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional.
Length = 880
Score = 28.5 bits (64), Expect = 3.4
Identities = 27/77 (35%), Positives = 44/77 (57%)
Query: 134 ERNVKLPKMLEPLLVLTLRKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEE 193
E + +LP++ E L L K+ ++ K++ EE E+E E EG + + E E E EE
Sbjct: 211 EISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEE 270
Query: 194 EEEEEEEEEEEEEEEEE 210
++E EE EE+ +E +E
Sbjct: 271 LKKEIEELEEKVKELKE 287
>gnl|CDD|185582 PTZ00373, PTZ00373, 60S Acidic ribosomal protein P2; Provisional.
Length = 112
Score = 27.2 bits (60), Expect = 3.4
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 184 GGEEEGGGEEEEEEEEEEEEEEEEEE 209
G G E ++EE++EEEEEEE++
Sbjct: 80 GAATAGAKAEAKKEEKKEEEEEEEDD 105
Score = 26.8 bits (59), Expect = 4.9
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 182 GGGGEEEGGGEEEEEEEEEEEEEEEEEEE 210
G G + E ++EE++EEEEEEE++
Sbjct: 77 PAAGAATAGAKAEAKKEEKKEEEEEEEDD 105
Score = 26.4 bits (58), Expect = 7.0
Identities = 12/17 (70%), Positives = 15/17 (88%)
Query: 158 KKKKKKEEEEEEEEEEE 174
K + KKEE++EEEEEEE
Sbjct: 87 KAEAKKEEKKEEEEEEE 103
>gnl|CDD|138835 PRK12279, PRK12279, 50S ribosomal protein L22/unknown domain fusion
protein; Provisional.
Length = 311
Score = 28.1 bits (62), Expect = 3.5
Identities = 17/66 (25%), Positives = 31/66 (46%)
Query: 134 ERNVKLPKMLEPLLVLTLRKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEE 193
+ K P +EP + +K K K + K E++E + E + E++ E+ ++
Sbjct: 124 AKKSKKPLPVEPKAKVETKKVAKPSKVEVKPVEKDENVDPELLKREQQVLKVVEKTASQK 183
Query: 194 EEEEEE 199
EEE E
Sbjct: 184 EEETTE 189
>gnl|CDD|219256 pfam06991, Prp19_bind, Splicing factor, Prp19-binding domain. This
family represents the C-terminus (approximately 300
residues) of proteins that are involved as binding
partners for Prp19 as part of the nuclear pore complex.
The family in Drosophila is necessary for pre-mRNA
splicing, and the human protein has been found in
purifications of the spliceosome. In the past this
family was thought, erroneously, to be associated with
microfibrillin.
Length = 277
Score = 28.0 bits (62), Expect = 3.5
Identities = 15/25 (60%), Positives = 18/25 (72%)
Query: 186 EEEGGGEEEEEEEEEEEEEEEEEEE 210
EEE EEEEEE EEEEE + E++
Sbjct: 8 EEEDESGEEEEEESEEEEETDSEDD 32
Score = 26.8 bits (59), Expect = 8.4
Identities = 16/26 (61%), Positives = 20/26 (76%)
Query: 186 EEEGGGEEEEEEEEEEEEEEEEEEEE 211
EE+ GEEEEEE EEEEE + E++ E
Sbjct: 9 EEDESGEEEEEESEEEEETDSEDDME 34
>gnl|CDD|217667 pfam03666, NPR3, Nitrogen Permease regulator of amino acid
transport activity 3. This family, also known in yeasts
as Rmd11, complexes with NPR2, pfam06218. This complex
heterodimer is responsible for inactivating TORC1. an
evolutionarily conserved protein complex that controls
cell size via nutritional input signals, specifically,
in response to amino acid starvation.
Length = 424
Score = 28.1 bits (63), Expect = 3.5
Identities = 11/57 (19%), Positives = 23/57 (40%)
Query: 154 KKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEE 210
+KKKKKK+KK + + ++ E + E+ + + E+ +
Sbjct: 45 RKKKKKKQKKSDRADPNDDREPSVDSEDSSSKSSSKSESGSLANSDPASDPSSEDSK 101
Score = 27.3 bits (61), Expect = 6.8
Identities = 10/57 (17%), Positives = 23/57 (40%)
Query: 155 KKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
+KKKKKK+K+ + + ++ + E + E + + E+ +
Sbjct: 45 RKKKKKKQKKSDRADPNDDREPSVDSEDSSSKSSSKSESGSLANSDPASDPSSEDSK 101
Score = 27.3 bits (61), Expect = 7.2
Identities = 14/59 (23%), Positives = 24/59 (40%)
Query: 150 TLRKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEE 208
T RKKKKKK+KK + ++ E E+ + G + + E+ +
Sbjct: 43 TWRKKKKKKQKKSDRADPNDDREPSVDSEDSSSKSSSKSESGSLANSDPASDPSSEDSK 101
>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein. TolA couples the inner
membrane complex of itself with TolQ and TolR to the
outer membrane complex of TolB and OprL (also called
Pal). Most of the length of the protein consists of
low-complexity sequence that may differ in both length
and composition from one species to another,
complicating efforts to discriminate TolA (the most
divergent gene in the tol-pal system) from paralogs such
as TonB. Selection of members of the seed alignment and
criteria for setting scoring cutoffs are based largely
conserved operon struction. //The Tol-Pal complex is
required for maintaining outer membrane integrity. Also
involved in transport (uptake) of colicins and
filamentous DNA, and implicated in pathogenesis.
Transport is energized by the proton motive force. TolA
is an inner membrane protein that interacts with
periplasmic TolB and with outer membrane porins ompC,
phoE and lamB [Transport and binding proteins, Other,
Cellular processes, Pathogenesis].
Length = 346
Score = 28.3 bits (63), Expect = 3.6
Identities = 16/61 (26%), Positives = 32/61 (52%)
Query: 151 LRKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEE 210
L ++ +K K+ E+ ++ EE+ + EE E + E E E++ +EE +++ E
Sbjct: 94 LEQRAAAEKAAKQAEQAAKQAEEKQKQAEEAKAKQAAEAKAKAEAEAEKKAKEEAKKQAE 153
Query: 211 E 211
E
Sbjct: 154 E 154
Score = 26.7 bits (59), Expect = 8.8
Identities = 12/59 (20%), Positives = 32/59 (54%)
Query: 151 LRKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEE 209
L ++ ++ +K++ E+ ++E E+ E+ E+ EE++++ EE + ++ E
Sbjct: 73 LEQQAEEAEKQRAAEQARQKELEQRAAAEKAAKQAEQAAKQAEEKQKQAEEAKAKQAAE 131
>gnl|CDD|218336 pfam04935, SURF6, Surfeit locus protein 6. The surfeit locus
protein SURF-6 is shown to be a component of the
nucleolar matrix and has a strong binding capacity for
nucleic acids.
Length = 206
Score = 27.7 bits (62), Expect = 3.6
Identities = 13/52 (25%), Positives = 29/52 (55%)
Query: 152 RKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEE 203
R+K++++K +KK++ +E +++E+ + E E EE ++ E E
Sbjct: 12 RRKREQRKARKKQKRKEAKKKEDAQKSEAEEVKNEENKSKKKAAPIENAEGN 63
>gnl|CDD|221429 pfam12118, SprA-related, SprA-related family. This protein is
found in bacteria. Proteins in this family are typically
between 234 to 465 amino acids in length. There is a
conserved GEV sequence motif.Most members are annotated
as being SprA-related.
Length = 261
Score = 27.8 bits (62), Expect = 3.6
Identities = 10/46 (21%), Positives = 27/46 (58%)
Query: 166 EEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
+E +++ E +E GEEE ++ E ++ ++++E++++E
Sbjct: 64 SASQELQKQASESNDEEVVGEEEPEKDQAEAGKQLSQKQQEQQQQE 109
>gnl|CDD|237047 PRK12298, obgE, GTPase CgtA; Reviewed.
Length = 390
Score = 27.9 bits (63), Expect = 3.7
Identities = 11/53 (20%), Positives = 29/53 (54%)
Query: 158 KKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEE 210
++ ++E EE E E+ ++ EE E++++ +++ +E+++E E
Sbjct: 333 EENPREEAEEAEAPEKVEFMWDDYHREQLEEVEEEDDDDWDDDWDEDDDEGVE 385
Score = 27.9 bits (63), Expect = 4.4
Identities = 10/53 (18%), Positives = 29/53 (54%)
Query: 157 KKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEE 209
++ +++ EE E E+ E ++ EE ++++ +++ +E+++E E
Sbjct: 333 EENPREEAEEAEAPEKVEFMWDDYHREQLEEVEEEDDDDWDDDWDEDDDEGVE 385
>gnl|CDD|218115 pfam04502, DUF572, Family of unknown function (DUF572). Family of
eukaryotic proteins with undetermined function.
Length = 321
Score = 27.8 bits (62), Expect = 3.8
Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 12/61 (19%)
Query: 151 LRKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEE 210
L +++KK+++EEEEE+E + G E EE+ ++E+ E++E
Sbjct: 173 LEALFRREKKEEEEEEEEDEALI------------KSLSFGPETEEDRRRADDEDSEDDE 220
Query: 211 E 211
E
Sbjct: 221 E 221
Score = 27.4 bits (61), Expect = 5.6
Identities = 15/51 (29%), Positives = 27/51 (52%)
Query: 159 KKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEE 209
++E++EEEEEEEE + G E ++E+ E++EE+ +
Sbjct: 175 ALFRREKKEEEEEEEEDEALIKSLSFGPETEEDRRRADDEDSEDDEEDNDN 225
>gnl|CDD|236394 PRK09169, PRK09169, hypothetical protein; Validated.
Length = 2316
Score = 28.1 bits (63), Expect = 3.8
Identities = 24/66 (36%), Positives = 29/66 (43%), Gaps = 8/66 (12%)
Query: 70 KETAEAYLGHSVRDA---VITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAY- 125
E A A VRDA + +PA A + + A GL VMRI N A Y
Sbjct: 2164 PEQAAA----RVRDALRWEVVLPAEGFGAAVEQARQALGAKGLRVMRINNGFAAPDTTYA 2219
Query: 126 GLDKNL 131
GL+ NL
Sbjct: 2220 GLNVNL 2225
>gnl|CDD|217461 pfam03261, CDK5_activator, Cyclin-dependent kinase 5 activator
protein.
Length = 314
Score = 27.9 bits (62), Expect = 4.0
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 129 KNLKGERNVKLPKMLEPLLVLTLRKKKKKKKKKKKE 164
KN K E+N+K ++ P L+ ++ KKKK
Sbjct: 37 KNAKSEKNLKRHSIIIP--ALSWKRLVASGSKKKKT 70
>gnl|CDD|238356 cd00660, Topoisomer_IB_N, Topoisomer_IB_N: N-terminal DNA binding
fragment found in eukaryotic DNA topoisomerase (topo) IB
proteins similar to the monomeric yeast and human topo I
and heterodimeric topo I from Leishmania donvanni. Topo
I enzymes are divided into: topo type IA (bacterial)
and type IB (eukaryotic). Topo I relaxes superhelical
tension in duplex DNA by creating a single-strand nick,
the broken strand can then rotate around the unbroken
strand to remove DNA supercoils and, the nick is
religated, liberating topo I. These enzymes regulate the
topological changes that accompany DNA replication,
transcription and other nuclear processes. Human topo I
is the target of a diverse set of anticancer drugs
including camptothecins (CPTs). CPTs bind to the topo
I-DNA complex and inhibit re-ligation of the
single-strand nick, resulting in the accumulation of
topo I-DNA adducts. In addition to differences in
structure and some biochemical properties,
Trypanosomatid parasite topo I differ from human topo I
in their sensitivity to CPTs and other classical topo I
inhibitors. Trypanosomatid topos I play putative roles
in organizing the kinetoplast DNA network unique to
these parasites. This family may represent more than
one structural domain.
Length = 215
Score = 27.6 bits (62), Expect = 4.0
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 151 LRKKKKKKKKKKKEEEEEEEEEEEGGEEE 179
++K+KKK KEE++ +EE+E EE
Sbjct: 94 FEEEKEKKKAMSKEEKKAIKEEKEKLEEP 122
>gnl|CDD|222581 pfam14181, YqfQ, YqfQ-like protein. The YqfQ-like protein family
includes the B. subtilis YqfQ protein, also known as
VrrA, which is functionally uncharacterized. This family
of proteins is found in bacteria. Proteins in this
family are typically between 146 and 237 amino acids in
length. There are two conserved sequence motifs: QYGP
and PKLY.
Length = 155
Score = 27.4 bits (61), Expect = 4.0
Identities = 14/51 (27%), Positives = 26/51 (50%)
Query: 160 KKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEE 210
+EEEE EEE E+E+ + E +++ E + + E+E+ + E
Sbjct: 92 SSSDDEEEETEEESTDETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTE 142
Score = 26.3 bits (58), Expect = 9.9
Identities = 10/36 (27%), Positives = 19/36 (52%)
Query: 176 GEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
++EE EE E+E+ E + E +E+++ E
Sbjct: 93 SSDDEEEETEEESTDETEQEDPPETKTESKEKKKRE 128
>gnl|CDD|224003 COG1077, MreB, Actin-like ATPase involved in cell morphogenesis
[Cell division and chromosome partitioning].
Length = 342
Score = 28.0 bits (63), Expect = 4.1
Identities = 18/44 (40%), Positives = 26/44 (59%)
Query: 85 VITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLD 128
VI VP+ D +R+A K+A AG + ++ EP AAA+ GL
Sbjct: 105 VICVPSGITDVERRAIKEAAESAGAREVYLIEEPMAAAIGAGLP 148
>gnl|CDD|180755 PRK06926, PRK06926, flagellar motor protein MotP; Reviewed.
Length = 271
Score = 27.8 bits (62), Expect = 4.2
Identities = 9/33 (27%), Positives = 20/33 (60%)
Query: 140 PKMLEPLLVLTLRKKKKKKKKKKKEEEEEEEEE 172
P++LE L + K+ K+++ ++++EE E
Sbjct: 239 PRILEEKLSVFSSKEDWTKEEEDRKKKEEVHEA 271
>gnl|CDD|214691 smart00486, POLBc, DNA polymerase type-B family. DNA polymerase
alpha, delta, epsilon and zeta chain (eukaryota), DNA
polymerases in archaea, DNA polymerase II in e. coli,
mitochondrial DNA polymerases and and virus DNA
polymerases.
Length = 474
Score = 27.9 bits (62), Expect = 4.3
Identities = 16/33 (48%), Positives = 23/33 (69%), Gaps = 2/33 (6%)
Query: 139 LPKMLEPLLVLTLRKKKKKKKKKKKEEEEEEEE 171
LPK+L+ LL RK+ KK KK+K+E EE ++
Sbjct: 367 LPKLLKKLL--DKRKEIKKLMKKEKDESEELKK 397
>gnl|CDD|220838 pfam10659, Trypan_glycop_C, Trypanosome variant surface
glycoprotein C-terminal domain. The trypanosome
parasite expresses these proteins to evade the immune
response.
Length = 98
Score = 26.6 bits (59), Expect = 4.4
Identities = 8/55 (14%), Positives = 23/55 (41%)
Query: 153 KKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEE 207
KK+ K K +E + ++ + E+ G +++++ ++ + E
Sbjct: 19 DKKEDDGKCKPKEGKAKKNGAPVTQTAGTETTTEKCKGKKDKKDCKKGCKWEGNT 73
>gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit.
Transcription initiation factor IIA (TFIIA) is a
heterotrimer, the three subunits being known as alpha,
beta, and gamma, in order of molecular weight. The N and
C-terminal domains of the gamma subunit are represented
in pfam02268 and pfam02751, respectively. This family
represents the precursor that yields both the alpha and
beta subunits. The TFIIA heterotrimer is an essential
general transcription initiation factor for the
expression of genes transcribed by RNA polymerase II.
Together with TFIID, TFIIA binds to the promoter region;
this is the first step in the formation of a
pre-initiation complex (PIC). Binding of the rest of the
transcription machinery follows this step. After
initiation, the PIC does not completely dissociate from
the promoter. Some components, including TFIIA, remain
attached and re-initiate a subsequent round of
transcription.
Length = 332
Score = 27.8 bits (62), Expect = 4.4
Identities = 11/56 (19%), Positives = 31/56 (55%)
Query: 156 KKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
K+ KK+ K + + +G + ++EG G +++ + E + ++ +++ +E+ E
Sbjct: 227 KQPKKQAKSSKRRTIAQIDGIDSDDEGDGSDDDDDEDAIESDLDDSDDDVSDEDGE 282
>gnl|CDD|216110 pfam00771, FHIPEP, FHIPEP family.
Length = 658
Score = 27.8 bits (63), Expect = 4.5
Identities = 12/36 (33%), Positives = 17/36 (47%)
Query: 146 LLVLTLRKKKKKKKKKKKEEEEEEEEEEEGGEEEEE 181
L L R K+K+++ + E E E E EEE
Sbjct: 288 LGGLAYRLSKRKRQEAAEAEAEAAEAEAAAEPEEES 323
>gnl|CDD|224881 COG1970, MscL, Large-conductance mechanosensitive channel [Cell
envelope biogenesis, outer membrane].
Length = 130
Score = 26.9 bits (60), Expect = 4.6
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 155 KKKKKKKKKEEEEEEEEEEEGGEEEEE 181
K K ++K E+EE E EE
Sbjct: 92 KAINKLRRKLEKEEPEAPAPAPPAEEV 118
Score = 26.5 bits (59), Expect = 5.7
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 154 KKKKKKKKKKEEEEEEEEEEEGGEEEE 180
K K ++K E+EE E EE
Sbjct: 92 KAINKLRRKLEKEEPEAPAPAPPAEEV 118
>gnl|CDD|221342 pfam11960, DUF3474, Domain of unknown function (DUF3474). This
presumed domain is functionally uncharacterized. This
domain is found in bacteria and eukaryotes. This domain
is typically between 126 to 140 amino acids in length.
This domain is found associated with pfam00487.
Length = 135
Score = 26.9 bits (60), Expect = 4.8
Identities = 12/16 (75%), Positives = 13/16 (81%)
Query: 192 EEEEEEEEEEEEEEEE 207
EEEEEE +EEEEEE
Sbjct: 74 EEEEEENGNDEEEEEE 89
Score = 26.9 bits (60), Expect = 4.8
Identities = 12/16 (75%), Positives = 13/16 (81%)
Query: 193 EEEEEEEEEEEEEEEE 208
EEEEEE +EEEEEE
Sbjct: 74 EEEEEENGNDEEEEEE 89
Score = 26.9 bits (60), Expect = 4.8
Identities = 12/16 (75%), Positives = 13/16 (81%)
Query: 194 EEEEEEEEEEEEEEEE 209
EEEEEE +EEEEEE
Sbjct: 74 EEEEEENGNDEEEEEE 89
Score = 26.9 bits (60), Expect = 4.8
Identities = 12/16 (75%), Positives = 13/16 (81%)
Query: 195 EEEEEEEEEEEEEEEE 210
EEEEEE +EEEEEE
Sbjct: 74 EEEEEENGNDEEEEEE 89
Score = 26.9 bits (60), Expect = 4.8
Identities = 12/16 (75%), Positives = 13/16 (81%)
Query: 196 EEEEEEEEEEEEEEEE 211
EEEEEE +EEEEEE
Sbjct: 74 EEEEEENGNDEEEEEE 89
>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau;
Validated.
Length = 824
Score = 28.0 bits (63), Expect = 4.9
Identities = 6/48 (12%), Positives = 12/48 (25%)
Query: 164 EEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
E ++ + + EEEE E++
Sbjct: 744 EPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEEEEMAEDDAP 791
Score = 27.3 bits (61), Expect = 8.1
Identities = 5/47 (10%), Positives = 10/47 (21%)
Query: 165 EEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
++ + EEEE E++
Sbjct: 746 DDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEEEEMAEDDAPS 792
>gnl|CDD|132396 TIGR03353, VI_chp_4, type VI secretion protein, VC_A0114 family.
Work by Mougous, et al. (2006), describes IAHP-related
loci as a type VI secretion system (PMID:16763151). This
protein family is associated with type VI secretion
loci, although not treated explicitly by Mougous, et al
[Protein fate, Protein and peptide secretion and
trafficking, Cellular processes, Pathogenesis].
Length = 439
Score = 27.6 bits (62), Expect = 5.0
Identities = 11/29 (37%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 43 GHVRLRKSFSPRC--CHHSPRLFQLLTKM 69
G + L SF P C SP L Q L ++
Sbjct: 173 GGIILDPSFIPPCLSIGASPPLGQRLREL 201
>gnl|CDD|217302 pfam02957, TT_ORF2, TT viral ORF2. TT virus (TTV), isolated
initially from a Japanese patient with hepatitis of
unknown aetiology, has since been found to infect both
healthy and diseased individuals, and numerous
prevalence studies have raised questions about its role
in unexplained hepatitis. ORF2 is a 150 residue protein.
This family also includes the VP2 protein from the
chicken anaemia virus which is a gyrovirus. Gyroviruses
are small circular single stranded viruses. The proteins
contain a set of conserved cysteine and histidine
residues suggesting a zinc binding domain.
Length = 103
Score = 26.3 bits (58), Expect = 5.0
Identities = 8/53 (15%), Positives = 16/53 (30%)
Query: 154 KKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEE 206
++ K E+ + G EG E + + E+ E+
Sbjct: 51 PEEPGDLAKWLTTTGEDGGTGPRGGDGTAGDAAGEGLDEGDLDLLFAEDFAED 103
>gnl|CDD|224212 COG1293, COG1293, Predicted RNA-binding protein homologous to
eukaryotic snRNP [Transcription].
Length = 564
Score = 27.7 bits (62), Expect = 5.1
Identities = 18/85 (21%), Positives = 31/85 (36%), Gaps = 3/85 (3%)
Query: 130 NLKGERNVKLPKMLEPLLVLTLRKKKKKKKKKKKEEEEEEEEEEEGGEEE---EEGGGGE 186
+ G +K+ ++ KK KK K + + + E E E
Sbjct: 344 DFYGNEEIKIELDKSKTPSENAQRYFKKYKKLKGAKVNLDRQLSELKEAIAYYESAKTAL 403
Query: 187 EEGGGEEEEEEEEEEEEEEEEEEEE 211
E+ G++ EE EE EE + +
Sbjct: 404 EKAEGKKAIEEIREELIEEGLLKSK 428
>gnl|CDD|173534 PTZ00341, PTZ00341, Ring-infected erythrocyte surface antigen;
Provisional.
Length = 1136
Score = 27.8 bits (61), Expect = 5.1
Identities = 22/48 (45%), Positives = 24/48 (50%)
Query: 164 EEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
EE EE EE E +EE EE E +EE EE EE EE EE
Sbjct: 1008 EENVEENIEENVEEYDEENVEEVEENVEEYDEENVEEIEENAEENVEE 1055
Score = 27.4 bits (60), Expect = 6.7
Identities = 22/47 (46%), Positives = 24/47 (51%)
Query: 165 EEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
EE EE +EE EE EE +E EE EE EE EE EE E
Sbjct: 1016 EENVEEYDEENVEEVEENVEEYDEENVEEIEENAEENVEENIEENIE 1062
Score = 27.1 bits (59), Expect = 8.4
Identities = 22/48 (45%), Positives = 24/48 (50%)
Query: 164 EEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
EE EE +EE E EE +EE E EE EE EE EE EE
Sbjct: 1016 EENVEEYDEENVEEVEENVEEYDEENVEEIEENAEENVEENIEENIEE 1063
Score = 27.1 bits (59), Expect = 9.9
Identities = 20/45 (44%), Positives = 22/45 (48%)
Query: 165 EEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEE 209
EE EE EE EE EE E EE EE EE EE ++E
Sbjct: 1081 EENVEENVEENVEEIEENVEENVEENAEENAEENAEENAEEYDDE 1125
>gnl|CDD|212686 cd11736, HSPA12B_like_NBD, Nucleotide-binding domain of HSPA12B and
similar proteins. Human HSPA12B (also known as 70-kDa
heat shock protein-12B, chromosome 20 open reading frame
60/C20orf60, dJ1009E24.2; the gene encoding HSPA12B maps
to 20p13) belongs to the heat shock protein 70 (HSP70)
family of chaperones that assist in protein folding and
assembly, and can direct incompetent "client" proteins
towards degradation. Typically, HSP70s have a
nucleotide-binding domain (NBD) and a substrate-binding
domain (SBD). The nucleotide sits in a deep cleft formed
between the two lobes of the NBD. The two subdomains of
each lobe change conformation between ATP-bound,
ADP-bound, and nucleotide-free states. ATP binding opens
up the substrate-binding site; substrate-binding
increases the rate of ATP hydrolysis. HSP70 chaperone
activity is regulated by various co-chaperones: J-domain
proteins and nucleotide exchange factors (NEFs). No
co-chaperones have yet been identified for HSPA12B.
HSPA12B is predominantly expressed in endothelial cells,
is required for angiogenesis, and may interact with
known angiogenesis mediators. HSPA12B may be important
for host defense in microglia-mediated immune response.
HSPA12B expression is up-regulated in lipopolysaccharide
(LPS)-induced inflammatory response in the spinal cord,
and mostly located in active microglia; this induced
expression may be regulated by activation of MAPK-p38,
ERK1/2 and SAPK/JNK signaling pathways. Overexpression
of HSPA12B also protects against LPS-induced cardiac
dysfunction and involves the preserved activation of the
PI3K/Akt signaling pathway.
Length = 468
Score = 27.6 bits (61), Expect = 5.2
Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 8/74 (10%)
Query: 58 HSPRLFQ--LLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGL------ 109
H+ R F+ L ++K+ + + L + V+TVPA + +Q ++A +AGL
Sbjct: 115 HALRFFREHALQELKDQSPSLLEKNEVRWVLTVPAIWKQPAKQFMREAAYLAGLVSPENP 174
Query: 110 NVMRIVNEPTAAAL 123
+ I EP AA++
Sbjct: 175 EQLLIALEPEAASI 188
>gnl|CDD|219009 pfam06404, PSK, Phytosulfokine precursor protein (PSK). This
family consists of several plant specific phytosulfokine
precursor proteins. Phytosulfokines, are active as
either a pentapeptide or a C-terminally truncated
tetrapeptide. These compounds were first isolated
because of their ability to stimulate cell division in
somatic embryo cultures of Asparagus officinalis.
Length = 74
Score = 25.8 bits (57), Expect = 5.4
Identities = 10/30 (33%), Positives = 12/30 (40%)
Query: 172 EEEGGEEEEEGGGGEEEGGGEEEEEEEEEE 201
E E E +E+ E E E EEE
Sbjct: 24 HESSKIEAAESSKVDEDEVVSECEGEGEEE 53
Score = 25.0 bits (55), Expect = 10.0
Identities = 11/37 (29%), Positives = 15/37 (40%)
Query: 143 LEPLLVLTLRKKKKKKKKKKKEEEEEEEEEEEGGEEE 179
P K + + K +E+E E E GEEE
Sbjct: 17 PLPTDTGHESSKIEAAESSKVDEDEVVSECEGEGEEE 53
>gnl|CDD|218673 pfam05642, Sporozoite_P67, Sporozoite P67 surface antigen. This
family consists of several Theileria P67 surface
antigens. A stage specific surface antigen of Theileria
parva, p67, is the basis for the development of an
anti-sporozoite vaccine for the control of East Coast
fever (ECF) in cattle. The antigen has been shown to
contain five distinct linear peptide sequences
recognised by sporozoite-neutralising murine monoclonal
antibodies.
Length = 727
Score = 27.7 bits (61), Expect = 5.6
Identities = 9/48 (18%), Positives = 24/48 (50%)
Query: 164 EEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
+E +E E + E+ + G + E++++ EEE+ + ++ +
Sbjct: 90 QEPVSQESEVQDNTEQNQDTKGSKTDSEEDDDDSEEEDNKSTSSKDGK 137
>gnl|CDD|217902 pfam04111, APG6, Autophagy protein Apg6. In yeast, 15 Apg proteins
coordinate the formation of autophagosomes. Autophagy is
a bulk degradation process induced by starvation in
eukaryotic cells. Apg6/Vps30p has two distinct functions
in the autophagic process, either associated with the
membrane or in a retrieval step of the carboxypeptidase
Y sorting pathway.
Length = 356
Score = 27.5 bits (61), Expect = 5.8
Identities = 17/47 (36%), Positives = 28/47 (59%)
Query: 163 KEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEE 209
E +E ++EEE +E EE +++ GE E +EE+E+ E EE +
Sbjct: 70 SELDELKKEEERLLDELEELEKEDDDLDGELVELQEEKEQLENEELQ 116
>gnl|CDD|219405 pfam07418, PCEMA1, Acidic phosphoprotein precursor PCEMA1. This
family consists of several acidic phosphoprotein
precursor PCEMA1 sequences which appear to be found
exclusively in Plasmodium chabaudi. PCEMA1 is an antigen
that is associated with the membrane of the infected
erythrocyte throughout the entire intraerythrocytic
cycle. The exact function of this family is unclear.
Length = 286
Score = 27.2 bits (60), Expect = 5.9
Identities = 18/49 (36%), Positives = 26/49 (53%)
Query: 163 KEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
K+ E + E +E+ E E G + E E+E E+E EEE EE+E
Sbjct: 231 KDGENDNEVKEKIRREYREWKGDKANTNETEIEDESEDEYEEEAGEEQE 279
>gnl|CDD|233692 TIGR02031, BchD-ChlD, magnesium chelatase ATPase subunit D. This
model represents one of two ATPase subunits of the
trimeric magnesium chelatase responsible for insertion
of magnesium ion into protoporphyrin IX. This is an
essential step in the biosynthesis of both chlorophyll
and bacteriochlorophyll. This subunit is found in green
plants, photosynthetic algae, cyanobacteria and other
photosynthetic bacteria. Unlike subunit I (TIGR02030),
this subunit is not found in archaea [Biosynthesis of
cofactors, prosthetic groups, and carriers, Chlorophyll
and bacteriochlorphyll].
Length = 589
Score = 27.5 bits (61), Expect = 5.9
Identities = 10/48 (20%), Positives = 19/48 (39%), Gaps = 9/48 (18%)
Query: 164 EEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
E E + E E EEE +E ++ + ++ EE ++
Sbjct: 267 PEPEPQPPPPPPPPEPPEP---------EEEPDEPDQTDPDDGEETDQ 305
>gnl|CDD|221668 pfam12619, MCM2_N, Mini-chromosome maintenance protein 2. This
domain family is found in eukaryotes, and is typically
between 138 and 153 amino acids in length. The family is
found in association with pfam00493. Mini-chromosome
maintenance (MCM) proteins are essential for DNA
replication. These proteins use ATPase activity to
perform this function.
Length = 145
Score = 26.9 bits (60), Expect = 6.1
Identities = 12/26 (46%), Positives = 19/26 (73%)
Query: 186 EEEGGGEEEEEEEEEEEEEEEEEEEE 211
E+E EEE E++ ++ +EE EEEE+
Sbjct: 1 EDEPDEEEELEDDIDDLDEEAEEEED 26
>gnl|CDD|150531 pfam09871, DUF2098, Uncharacterized protein conserved in archaea
(DUF2098). This domain, found in various hypothetical
prokaryotic proteins, has no known function.
Length = 91
Score = 26.1 bits (58), Expect = 6.2
Identities = 15/41 (36%), Positives = 26/41 (63%), Gaps = 3/41 (7%)
Query: 153 KKKKKKKKKKKEEEEEEE---EEEEGGEEEEEGGGGEEEGG 190
K K+KK+++++++EE E +EEE E+ + G G GG
Sbjct: 51 KVKEKKEEREEDKEELIERIKKEEETFEDVDLGSAGCGGGG 91
>gnl|CDD|218188 pfam04641, Rtf2, Replication termination factor 2. It is vital for
effective cell-replication that replication is not
stalled at any point by, for instance, damaged bases.
Rtf2 stabilizes the replication fork stalled at the
site-specific replication barrier RTS1 by preventing
replication restart until completion of DNA synthesis by
a converging replication fork initiated at a flanking
origin. The RTS1 element terminates replication forks
that are moving in the cen2-distal direction while
allowing forks moving in the cen2-proximal direction to
pass through the region. Rtf2 contains a C2HC2 motif
related to the C3HC4 RING-finger motif, and would appear
to fold up, creating a RING finger-like structure but
forming only one functional Zn2+ ion-binding site.
Length = 254
Score = 27.3 bits (61), Expect = 6.3
Identities = 15/58 (25%), Positives = 24/58 (41%)
Query: 152 RKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEE 209
+KKKKKKK KK E E G + G ++ +++ + E+ E
Sbjct: 184 KKKKKKKKTKKNNATGSSAEATVSSAVPTELSSGAGQVGEAKKLKKKRSIAPDNEKSE 241
>gnl|CDD|215124 PLN02195, PLN02195, cellulose synthase A.
Length = 977
Score = 27.6 bits (61), Expect = 6.3
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 152 RKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGE 186
+K KKKK KKKE + + E+ EE+ E
Sbjct: 124 KKNKKKKSAKKKEAHKAQIPPEQQMEEKPSADAYE 158
>gnl|CDD|115196 pfam06524, NOA36, NOA36 protein. This family consists of several
NOA36 proteins which contain 29 highly conserved
cysteine residues. The function of this protein is
unknown.
Length = 314
Score = 27.2 bits (60), Expect = 6.5
Identities = 5/36 (13%), Positives = 16/36 (44%)
Query: 176 GEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
+ + G ++E + +EEE+ ++++
Sbjct: 259 NKYGDFKGVNYGYESDDDEGSSSNDYDEEEDGDDDD 294
Score = 26.8 bits (59), Expect = 9.0
Identities = 6/30 (20%), Positives = 18/30 (60%)
Query: 182 GGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
G +++ G + +EEE+ ++++ E+ +
Sbjct: 270 GYESDDDEGSSSNDYDEEEDGDDDDNEDND 299
>gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional.
Length = 568
Score = 27.2 bits (60), Expect = 6.6
Identities = 14/57 (24%), Positives = 21/57 (36%)
Query: 153 KKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEE 209
K+K+ +K + E G +E+ G E EE + E E E E
Sbjct: 462 KEKELLTEKGGAQFSSANSLERGADEDYLIVNGTNEPYEEEVIKTNENENFPLENES 518
>gnl|CDD|221333 pfam11942, Spt5_N, Spt5 transcription elongation factor, acidic
N-terminal. This is the very acidic N-terminal region
of the early transcription elongation factor Spt5. The
Spt5-Spt4 complex regulates early transcription
elongation by RNA polymerase II and has an imputed role
in pre-mRNA processing via its physical association with
mRNA capping enzymes. The actual function of this
N-terminal domain is not known although it is
dispensable for binding to Spt4.
Length = 92
Score = 25.9 bits (57), Expect = 6.6
Identities = 17/48 (35%), Positives = 27/48 (56%)
Query: 164 EEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
+EEEEEEEEE+ E+ + +E E++ + E+EEEE+
Sbjct: 10 DEEEEEEEEEDDLEDLSDEDEFIDEAEAEDDRRHRRLDRRREKEEEED 57
>gnl|CDD|149438 pfam08374, Protocadherin, Protocadherin. The structure of
protocadherins is similar to that of classic cadherins
(pfam00028), but particularly on the cytoplasmic domains
they also have some unique features. They are expressed
in a variety of organisms and are found in high
concentrations in the brain where they seem to be
localised mainly at cell-cell contact sites. Their
expression seems to be developmentally regulated.
Length = 223
Score = 27.1 bits (60), Expect = 6.8
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 9/39 (23%)
Query: 152 RKKKKKKKKKKKEEE---------EEEEEEEEGGEEEEE 181
++KKKKK KKKK + EE + ++E E++ E
Sbjct: 90 KQKKKKKDKKKKSPKSLLLNFVTVEESKPDDEVHEQKSE 128
>gnl|CDD|237549 PRK13897, PRK13897, type IV secretion system component VirD4;
Provisional.
Length = 606
Score = 27.5 bits (61), Expect = 6.8
Identities = 12/48 (25%), Positives = 20/48 (41%)
Query: 141 KMLEPLLVLTLRKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEE 188
++L P V T + + EE E E EE+EE +++
Sbjct: 559 RLLPPTFVPTQEPYDPRANNNEASEETETITVPENNEEDEEDDDEDDD 606
Score = 27.1 bits (60), Expect = 9.5
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 181 EGGGGEEEGGGEEEEEEEEEEEEEEEEEE 209
EE E EE+EE+++E+++
Sbjct: 578 NNEASEETETITVPENNEEDEEDDDEDDD 606
>gnl|CDD|217450 pfam03247, Prothymosin, Prothymosin/parathymosin family.
Prothymosin alpha and parathymosin are two ubiquitous
small acidic nuclear proteins that are thought to be
involved in cell cycle progression, proliferation, and
cell differentiation.
Length = 106
Score = 26.1 bits (57), Expect = 7.0
Identities = 27/63 (42%), Positives = 36/63 (57%)
Query: 149 LTLRKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEE 208
L +K+ ++K+ K E EE G +E + EEE E++EEEE E EEEE EE
Sbjct: 16 LKEKKEVVEEKENGKNAPANGNENEENGAQEGDDEMEEEEEVDEDDEEEEGEGEEEEGEE 75
Query: 209 EEE 211
EEE
Sbjct: 76 EEE 78
>gnl|CDD|236356 PRK08944, motB, flagellar motor protein MotB; Reviewed.
Length = 302
Score = 27.3 bits (61), Expect = 7.0
Identities = 13/50 (26%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Query: 165 EEEEEEEEEEGGEEEEEGGGGEEEG---GGEEEEEEEEEEEEEEEEEEEE 211
+ ++ E + GE + GG ++ G GGE E + E+ +E+ E+
Sbjct: 98 DMTQQTLEFQAGESDSAGGTQQQRGKQRGGEASAEVKAEKAAAQEQIEDL 147
>gnl|CDD|219038 pfam06459, RR_TM4-6, Ryanodine Receptor TM 4-6. This region covers
TM regions 4-6 of the ryanodine receptor 1 family.
Length = 217
Score = 27.0 bits (60), Expect = 7.1
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 173 EEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEE 205
EEEEE G G + G E+EEE +E
Sbjct: 149 TSPAEEEEEEGSGSGDDGEEDEEEGIVYFVLQE 181
>gnl|CDD|224980 COG2069, CdhD, CO dehydrogenase/acetyl-CoA synthase delta subunit
(corrinoid Fe-S protein) [Energy production and
conversion].
Length = 403
Score = 27.1 bits (60), Expect = 7.1
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 11/45 (24%)
Query: 107 AGLNVMRIVNEPTAAALAYGLD-----------KNLKGERNVKLP 140
GL RIV +PT AL YG++ LKG+ ++++P
Sbjct: 275 RGLPRDRIVMDPTTCALGYGIEYAITNMERIRLAALKGDEDLQMP 319
>gnl|CDD|191365 pfam05756, S-antigen, S-antigen protein. S-antigens are heat
stable proteins that are found in the blood of
individuals infected with malaria.
Length = 94
Score = 26.0 bits (57), Expect = 7.1
Identities = 17/52 (32%), Positives = 24/52 (46%)
Query: 151 LRKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEE 202
LR K K ++ E+ +EE EG ++EE EE EE E + E
Sbjct: 42 LRSGFFNSKNGKGQKYEDLQEEGEGENDDEEDSNSEESNNDEENGLIEGQGE 93
>gnl|CDD|233044 TIGR00600, rad2, DNA excision repair protein (rad2). All proteins
in this family for which functions are known are flap
endonucleases that generate the 3' incision next to DNA
damage as part of nucleotide excision repair. This
family is related to many other flap endonuclease
families including the fen1 family. This family is based
on the phylogenomic analysis of JA Eisen (1999, Ph.D.
Thesis, Stanford University) [DNA metabolism, DNA
replication, recombination, and repair].
Length = 1034
Score = 27.6 bits (61), Expect = 7.2
Identities = 14/51 (27%), Positives = 21/51 (41%)
Query: 161 KKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
K + +E EE E E E E +E EE+ EEE++ +
Sbjct: 677 KSQPTDESEENAENKVASIEGEHRKEIEDLLFDESEEDNIVGMIEEEKDAD 727
>gnl|CDD|111875 pfam03032, Brevenin, Brevenin/esculentin/gaegurin/rugosin family.
This family contains a number of defence peptides
secreted from the skin of amphibians, including the
opiate-like dermorphins and deltorphins, and the
antimicrobial dermoseptins and temporins. The alignment
for this family includes the signal peptide.
Length = 46
Score = 24.6 bits (54), Expect = 7.3
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 186 EEEGGGEEEEEEEEEEEEEEEEEE 209
EEE +EEE E+EEE EE+ E +
Sbjct: 22 EEEKREDEEENEDEEEGEEQSEVK 45
>gnl|CDD|233467 TIGR01554, major_cap_HK97, phage major capsid protein, HK97 family.
This model family represents the major capsid protein
component of the heads (capsids) of bacteriophage HK97,
phi-105, P27, and related phage. This model represents
one of several analogous families lacking detectable
sequence similarity. The gene encoding this component is
typically located in an operon encoding the small and
large terminase subunits, the portal protein and the
prohead or maturation protease [Mobile and
extrachromosomal element functions, Prophage functions].
Length = 384
Score = 27.3 bits (61), Expect = 7.4
Identities = 23/78 (29%), Positives = 30/78 (38%), Gaps = 19/78 (24%)
Query: 150 TLRKKKKKKKKKKKEEEEEE-------------------EEEEEGGEEEEEGGGGEEEGG 190
L K+ +K + +K E EE + EE +E E EGG
Sbjct: 10 ELAKELRKLTEDEKLAEAEEEKAEYDALKEEIDKLDAEIDRLEELLDELEAKPAASGEGG 69
Query: 191 GEEEEEEEEEEEEEEEEE 208
G EEEEEE + E E
Sbjct: 70 GGEEEEEEAKAEAAEFRA 87
>gnl|CDD|240576 cd12932, RRP7_like, RRP7 domain ribosomal RNA-processing protein 7
(Rrp7p), ribosomal RNA-processing protein 7 homolog A
(Rrp7A), and similar proteins. This CD corresponds to
the RRP7 domain of Rrp7p and Rrp7A. Rrp7p is encoded by
YCL031C gene from Saccharomyces cerevisiae. It is an
essential yeast protein involved in pre-rRNA processing
and ribosome assembly, and is speculated to be required
for correct assembly of rpS27 into the pre-ribosomal
particle. Rrp7A, also termed gastric cancer antigen
Zg14, is the Rrp7p homolog mainly found in Metazoans.
The cellular function of Rrp7A remains unclear
currently. Both Rrp7p and Rrp7A harbor an N-terminal RNA
recognition motif (RRM), also termed RBD (RNA binding
domain) or RNP (ribonucleoprotein domain), and a
C-terminal RRP7 domain.
Length = 118
Score = 26.1 bits (58), Expect = 7.4
Identities = 19/56 (33%), Positives = 36/56 (64%), Gaps = 6/56 (10%)
Query: 162 KKEEEEEEEEEEEGGEEEEEG------GGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
K+EEEE+EE +E E +E+G GG + + EE E + +E+E+++++++E
Sbjct: 32 KREEEEKEEAKEARNEPDEDGFVTVTRGGRKGKTAREEAVEAKAKEKEKKKKKKKE 87
>gnl|CDD|221177 pfam11708, Slu7, Pre-mRNA splicing Prp18-interacting factor. The
spliceosome, an assembly of snRNAs (U1, U2, U4/U6, and
U5) and proteins, catalyzes the excision of introns from
pre-mRNAs in two successive trans-esterification
reactions. Step 2 depends upon integral spliceosome
constituents such as U5 snRNA and Prp8 and
non-spliceosomal proteins Prp16, Slu7, Prp18, and Prp22.
ATP hydrolysis by the DEAH-box enzyme Prp16 promotes a
conformational change in the spliceosome that leads to
protection of the 3'ss from targeted RNase H cleavage.
This change, which probably reflects binding of the 3'ss
PyAG in the catalytic centre of the spliceosome,
requires the ordered recruitment of Slu7, Prp18, and
Prp22 to the spliceosome. There is a close functional
relationship between Prp8, Prp18, and Slu7, and Prp18
interacts with Slu7, so that together they recruit Prp22
to the spliceosome. Most members of the family carry a
zinc-finger of the CCHC-type upstream of this domain.
Length = 236
Score = 27.0 bits (60), Expect = 7.5
Identities = 17/50 (34%), Positives = 29/50 (58%)
Query: 151 LRKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEE 200
LRKK+K+KK++ K ++++ E+ GGEE + E G E+ E +
Sbjct: 161 LRKKEKEKKEQLKIQKKQSLLEKYGGEEHLDKPPKELLLGQSEDYVEYDR 210
>gnl|CDD|222440 pfam13897, GOLD_2, Golgi-dynamics membrane-trafficking. Sec14-like
Golgi-trafficking domain The GOLD domain is always found
combined with lipid- or membrane-association domains.
Length = 136
Score = 26.6 bits (59), Expect = 7.5
Identities = 12/20 (60%), Positives = 13/20 (65%)
Query: 164 EEEEEEEEEEEGGEEEEEGG 183
EEEEEE EEEE + E G
Sbjct: 57 EEEEEEAEEEEAETGDVEAG 76
Score = 26.2 bits (58), Expect = 8.6
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 191 GEEEEEEEEEEEEEEEEEEE 210
+EEEEEE EEEE E + E
Sbjct: 55 SDEEEEEEAEEEEAETGDVE 74
>gnl|CDD|218421 pfam05086, Dicty_REP, Dictyostelium (Slime Mold) REP protein. This
family consists of REP proteins from Dictyostelium
(Slime molds). REP protein is likely involved in
transcription regulation and control of DNA replication,
specifically amplification of plasmid at low copy
numbers. The formation of homomultimers may be required
for their regulatory activity.
Length = 910
Score = 27.1 bits (60), Expect = 7.5
Identities = 9/29 (31%), Positives = 21/29 (72%)
Query: 180 EEGGGGEEEGGGEEEEEEEEEEEEEEEEE 208
+ E++ E+E+++E+E+E+E+E+E
Sbjct: 882 SQFQENEDDDADEDEDQDEDEDEDEDEDE 910
>gnl|CDD|221586 pfam12457, TIP_N, Tuftelin interacting protein N terminal. This
domain family is found in eukaryotes, and is typically
between 99 and 114 amino acids in length. The family is
found in association with pfam08697, pfam01585. There
are two completely conserved residues (G and F) that may
be functionally important. TIP is involved in enamel
assembly by interacting with one of the major proteins
responsible for biomineralisation of enamel - tuftelin.
Length = 106
Score = 26.2 bits (58), Expect = 7.7
Identities = 14/79 (17%), Positives = 38/79 (48%), Gaps = 22/79 (27%)
Query: 155 KKKKKKKKKEE-------EEEEEEEEEGGEEEEEGG---------------GGEEEGGGE 192
++++++ KE+ ++++++E E GG ++ E
Sbjct: 23 NRRRRRQTKEQAIYGIFADDDDDDEGERRRGRGRRRSKKKKDYSKPVAFVSGGIKQAAKE 82
Query: 193 EEEEEEEEEEEEEEEEEEE 211
EE+++E+E E+++E +E+
Sbjct: 83 PEEDDKEDESEDDDESDED 101
>gnl|CDD|227891 COG5604, COG5604, Uncharacterized conserved protein [Function
unknown].
Length = 523
Score = 27.2 bits (60), Expect = 7.8
Identities = 11/75 (14%), Positives = 27/75 (36%)
Query: 137 VKLPKMLEPLLVLTLRKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEE 196
K K + L+ ++K+ + ++ + E + G + +E+
Sbjct: 2 GKASKATKKFTKNHLKNTIDRRKQLARSKKVYGTKNRNSHTENKMESGTNDNNKNKEKLS 61
Query: 197 EEEEEEEEEEEEEEE 211
+ + + EEEE
Sbjct: 62 KLYSDVDSSSSEEEE 76
>gnl|CDD|234456 TIGR04074, bacter_Hen1, 3' terminal RNA ribose
2'-O-methyltransferase Hen1. Members of this protein
family are bacterial Hen1, a 3' terminal RNA ribose
2'-O-methyltransferase that acts in bacterial RNA
repair. All members of the seed alignment belong to a
cassette with the RNA repair enzyme polynucleotide
kinase-phosphatase (Pnkp). Chemically similar Hen1 in
eukaryotes acts instead on small regulatory RNAs
[Transcription, RNA processing, Protein synthesis, tRNA
and rRNA base modification].
Length = 462
Score = 26.9 bits (60), Expect = 8.0
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 187 EEGGGEEEEEEEEEEEEEEEEE 208
E E EE E EE +EE E+
Sbjct: 241 EADEAEPEEAETEEAQEEAAEK 262
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and
chromosome partitioning].
Length = 1163
Score = 27.4 bits (61), Expect = 8.0
Identities = 19/58 (32%), Positives = 29/58 (50%)
Query: 154 KKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
+++ ++ + + EE EE EE + E EE EE E+ E EE +EE EE
Sbjct: 308 RERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEE 365
>gnl|CDD|218517 pfam05236, TAF4, Transcription initiation factor TFIID component
TAF4 family. This region of similarity is found in
Transcription initiation factor TFIID component TAF4.
Length = 255
Score = 27.0 bits (60), Expect = 8.0
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 160 KKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEE 199
K+K+EEE E E G E+ E +++ E++ E EE
Sbjct: 121 KQKEEEERRVERRRELGLEDPEQLRLKQKAKEEQKAESEE 160
>gnl|CDD|227352 COG5019, CDC3, Septin family protein [Cell division and chromosome
partitioning / Cytoskeleton].
Length = 373
Score = 26.9 bits (60), Expect = 8.0
Identities = 19/59 (32%), Positives = 25/59 (42%)
Query: 152 RKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEE 210
R +K K E +E E EEE E E E+E+ EE E+ EE +E
Sbjct: 288 RTEKLSGLKNSGEPSLKEIHEARLNEEERELKKKFTEKIREKEKRLEELEQNLIEERKE 346
>gnl|CDD|236498 PRK09401, PRK09401, reverse gyrase; Reviewed.
Length = 1176
Score = 27.2 bits (61), Expect = 8.4
Identities = 18/52 (34%), Positives = 25/52 (48%)
Query: 158 KKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEE 209
K+ KK + + E GG E EG E+E + E E+ EE+EEE
Sbjct: 827 KEYKKSKGYVLVIKLENGGGLELEGEFSEKEEAEKFYNNLIEVEKVEEKEEE 878
>gnl|CDD|237875 PRK14974, PRK14974, cell division protein FtsY; Provisional.
Length = 336
Score = 26.9 bits (60), Expect = 8.7
Identities = 23/51 (45%), Positives = 31/51 (60%), Gaps = 10/51 (19%)
Query: 151 LRKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEE 201
L++K K +K +E+ EEEEEEE EEEE EEE+EEE++E
Sbjct: 5 LKEKLSKFVEKVEEKIEEEEEEEAPEAEEEE----------EEEDEEEKKE 45
>gnl|CDD|218391 pfam05029, TIMELESS_C, Timeless protein C terminal region. The
timeless (tim) gene is essential for circadian function
in Drosophila. Putative homologues of Drosophila tim
have been identified in both mice and humans (mTim and
hTIM, respectively). Mammalian TIM is not the true
orthologue of Drosophila TIM, but is the likely
orthologue of a fly gene, timeout (also called tim-2).
mTim has been shown to be essential for embryonic
development, but does not have substantiated circadian
function. Some family members contain a SANT domain in
this region.
Length = 507
Score = 27.0 bits (59), Expect = 8.9
Identities = 16/59 (27%), Positives = 25/59 (42%)
Query: 153 KKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
KK++KK K K+ EE E++ + EEE E + E+ + E E
Sbjct: 227 KKRRKKLKPKQPNGEESGEDDFQEDPEEEEQLPESKPEETEKRVSAFQVEGSTLISAEN 285
>gnl|CDD|221323 pfam11931, DUF3449, Domain of unknown function (DUF3449). This
presumed domain is functionally uncharacterized. This
domain is found in eukaryotes. This domain is typically
between 181 to 207 amino acids in length. This domain
has two conserved sequence motifs: PIP and CEICG. The
domain carries a zinc-finger domain of the C2H2-type.
Length = 187
Score = 26.5 bits (59), Expect = 9.1
Identities = 9/36 (25%), Positives = 18/36 (50%)
Query: 160 KKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEE 195
+K+ EEE + + E+ G +++ +EEE
Sbjct: 27 RKQALTEEERQASADESSEDASEDGSDDDSDDDEEE 62
>gnl|CDD|240388 PTZ00372, PTZ00372, endonuclease 4-like protein; Provisional.
Length = 413
Score = 27.0 bits (60), Expect = 9.1
Identities = 12/48 (25%), Positives = 28/48 (58%)
Query: 150 TLRKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEE 197
T KK KK+ K + +++ E+++++ E++E GE + G + ++
Sbjct: 52 TSTKKDKKEDKNNESKKKSEKKKKKKKEKKEPKSEGETKLGFKTPKKS 99
>gnl|CDD|146016 pfam03179, V-ATPase_G, Vacuolar (H+)-ATPase G subunit. This family
represents the eukaryotic vacuolar (H+)-ATPase
(V-ATPase) G subunit. V-ATPases generate an acidic
environment in several intracellular compartments.
Correspondingly, they are found as membrane-attached
proteins in several organelles. They are also found in
the plasma membranes of some specialised cells.
V-ATPases consist of peripheral (V1) and membrane
integral (V0) heteromultimeric complexes. The G subunit
is part of the V1 subunit, but is also thought to be
strongly attached to the V0 complex. It may be involved
in the coupling of ATP degradation to H+ translocation.
Length = 105
Score = 25.6 bits (57), Expect = 9.3
Identities = 21/58 (36%), Positives = 34/58 (58%)
Query: 153 KKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEE 210
+K++ K+ K+ +EE E+E EE + E E E E G E E++ E+E EE+ +E
Sbjct: 24 RKRRAKRLKQAKEEAEKEIEEYRAQREAEFKEFEAEHSGSRGELEKKIEKETEEKIDE 81
>gnl|CDD|219564 pfam07771, TSGP1, Tick salivary peptide group 1. This contains a
group of peptides derived from a salivary gland cDNA
library of the tick Ixodes scapularis. Also present are
peptides from a related tick species, Ixodes ricinus.
They are characterized by a putative signal peptide
indicative of secretion and conserved cysteine residues.
Length = 120
Score = 26.0 bits (57), Expect = 9.3
Identities = 9/20 (45%), Positives = 15/20 (75%)
Query: 152 RKKKKKKKKKKKEEEEEEEE 171
+KKKKK KK KK ++ +++
Sbjct: 101 KKKKKKSKKTKKPKKSSKKD 120
>gnl|CDD|218555 pfam05320, Pox_RNA_Pol_19, Poxvirus DNA-directed RNA polymerase 19
kDa subunit. This family contains several DNA-directed
RNA polymerase 19 kDa polypeptides. The Poxvirus
DNA-directed RNA polymerase (EC: 2.7.7.6) catalyzes
DNA-template-directed extension of the 3'-end of an RNA
strand by one nucleotide at a time.
Length = 167
Score = 26.2 bits (58), Expect = 9.5
Identities = 10/20 (50%), Positives = 16/20 (80%)
Query: 192 EEEEEEEEEEEEEEEEEEEE 211
++++ EE EEEEE+EE+ E
Sbjct: 12 SDDDDSEEYEEEEEDEEDAE 31
>gnl|CDD|236800 PRK10935, PRK10935, nitrate/nitrite sensor protein NarQ;
Provisional.
Length = 565
Score = 26.7 bits (60), Expect = 9.5
Identities = 17/83 (20%), Positives = 22/83 (26%), Gaps = 34/83 (40%)
Query: 17 QNQPCQATDNNIGYLARSFEGPEWDYGHVRLRKSFSPRCCHHSPRLFQLLTKMKETAEAY 76
Q P D +GYL W L + +M
Sbjct: 307 QILPLTMEDTVLGYL-------HWQASLP-----------CPDEPLMNNVAQM------- 341
Query: 77 LGHSVRDAVITVPAYFNDAQRQA 99
LG + YFN AQ+Q
Sbjct: 342 LGRGL---------YFNQAQKQQ 355
>gnl|CDD|223494 COG0417, PolB, DNA polymerase elongation subunit (family B) [DNA
replication, recombination, and repair].
Length = 792
Score = 27.0 bits (60), Expect = 9.6
Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Query: 139 LPKMLEPLLVLTLRKKKKKKKKKKKEEEE 167
LP++LE L L R + KKK KK+K+ E
Sbjct: 471 LPEILEEL--LDRRDEIKKKMKKEKDPSE 497
>gnl|CDD|222948 PHA02941, PHA02941, hypothetical protein; Provisional.
Length = 356
Score = 26.9 bits (59), Expect = 9.8
Identities = 18/42 (42%), Positives = 24/42 (57%)
Query: 170 EEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
EE+E +E +E E EE +E++EEEE EEEEE
Sbjct: 308 GEEKEPKQESQEQLFNPFAIDEEMLEETQEQQEEEENEEEEE 349
>gnl|CDD|162338 TIGR01398, FlhA, flagellar biosynthesis protein FlhA. This model
describes flagellar biosynthesis protein FlhA, one of a
large number of genes associated with the biosynthesis
of functional bacterial flagella. Homologs of many such
proteins, including FlhA, function in type III protein
secretion systems. A separate model describes InvA
(Salmonella enterica), LcrD (Yersinia enterocolitica),
HrcV (Xanthomonas), etc., all of which score below the
noise cutoff for this model [Cellular processes,
Chemotaxis and motility].
Length = 678
Score = 26.8 bits (60), Expect = 10.0
Identities = 10/35 (28%), Positives = 18/35 (51%)
Query: 147 LVLTLRKKKKKKKKKKKEEEEEEEEEEEGGEEEEE 181
L LR++ K++++ E + +EE E EE
Sbjct: 305 LAWYLRRRSKQEEEAAAEAAKAQEEAAEEEEESIN 339
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.305 0.128 0.350
Gapped
Lambda K H
0.267 0.0812 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 11,375,975
Number of extensions: 1173822
Number of successful extensions: 22413
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12507
Number of HSP's successfully gapped: 2822
Length of query: 211
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 118
Effective length of database: 6,812,680
Effective search space: 803896240
Effective search space used: 803896240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 57 (25.6 bits)