RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy471
(211 letters)
>d1dkgd1 c.55.1.1 (D:3-185) Heat shock protein 70kDa, ATPase
fragment {Escherichia coli, gene dnaK [TaxId: 562]}
Length = 183
Score = 119 bits (300), Expect = 8e-35
Identities = 53/66 (80%), Positives = 57/66 (86%)
Query: 65 LLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALA 124
+L KMK+TAE YLG V +AVITVPAYFNDAQRQATKDAG IAGL V RI+NEPTAAALA
Sbjct: 117 VLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALA 176
Query: 125 YGLDKN 130
YGLDK
Sbjct: 177 YGLDKG 182
>d1bupa1 c.55.1.1 (A:4-188) Heat shock protein 70kDa, ATPase
fragment {Cow (Bos taurus) [TaxId: 9913]}
Length = 185
Score = 109 bits (273), Expect = 1e-30
Identities = 53/66 (80%), Positives = 61/66 (92%)
Query: 64 QLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAAL 123
+LTKMKE AEAYLG +V +AV+TVPAYFND+QRQATKDAG IAGLNV+RI+NEPTAAA+
Sbjct: 119 MVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAI 178
Query: 124 AYGLDK 129
AYGLDK
Sbjct: 179 AYGLDK 184
>d1jcea1 c.55.1.1 (A:4-140) Prokaryotic actin homolog MreB
{Thermotoga maritima [TaxId: 2336]}
Length = 137
Score = 81.0 bits (199), Expect = 2e-20
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Query: 64 QLLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAAL 123
+L A+ + VI VP D +R+A DAG AG + + ++ EP AAA+
Sbjct: 75 VMLRYFINKAKGGMNLFKPRVVIGVPIGITDVERRAILDAGLEAGASKVFLIEEPMAAAI 134
Query: 124 AYGLD 128
G +
Sbjct: 135 --GSN 137
>d2oara1 f.16.1.1 (A:10-118) Gated mechanosensitive channel
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 109
Score = 29.4 bits (66), Expect = 0.12
Identities = 6/29 (20%), Positives = 10/29 (34%)
Query: 146 LLVLTLRKKKKKKKKKKKEEEEEEEEEEE 174
V L +KK E E+ + +
Sbjct: 75 FAVYFLVVLPYNTLRKKGEVEQPGDTQVV 103
>d1gsma2 b.1.1.4 (A:91-206) Mucosal addressin cell adhesion
molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId:
9606]}
Length = 116
Score = 28.4 bits (63), Expect = 0.27
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 184 GGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
GG+E G + E +EEEEE + +E+
Sbjct: 42 GGQELEGAQALGPEVQEEEEEPQGDEDV 69
>d1jfib_ a.22.1.3 (B:) Negative cofactor 2, NC2, beta chain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 135
Score = 28.7 bits (64), Expect = 0.30
Identities = 10/53 (18%), Positives = 24/53 (45%)
Query: 159 KKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
K+ +E + + + E G EEE +++E + +++ E ++E
Sbjct: 80 KEVLQECKTVALKRRKASSRLENLGIPEEELLRQQQELFAKARQQQAELAQQE 132
Score = 26.4 bits (58), Expect = 1.5
Identities = 9/54 (16%), Positives = 24/54 (44%)
Query: 151 LRKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEE 204
+++ ++ K + + E G EEE ++E + +++ E ++E
Sbjct: 79 VKEVLQECKTVALKRRKASSRLENLGIPEEELLRQQQELFAKARQQQAELAQQE 132
>d1siga_ a.177.1.1 (A:) Sigma70 {Escherichia coli [TaxId: 562]}
Length = 334
Score = 27.9 bits (61), Expect = 0.79
Identities = 6/44 (13%), Positives = 17/44 (38%)
Query: 164 EEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEE 207
EE+ E ++ E+EE+ +++ +++
Sbjct: 56 PNAEEDLAPTATHVGSELSQEDLDDDEDEDEEDGDDDSADDDNS 99
Score = 27.9 bits (61), Expect = 0.93
Identities = 6/45 (13%), Positives = 19/45 (42%)
Query: 164 EEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEE 208
+ EE+ E + + +E+EE+ +++ +++
Sbjct: 55 DPNAEEDLAPTATHVGSELSQEDLDDDEDEDEEDGDDDSADDDNS 99
Score = 27.2 bits (59), Expect = 1.4
Identities = 8/46 (17%), Positives = 22/46 (47%)
Query: 166 EEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
+ EE+ G +E ++E+E+EE+ +++ +++
Sbjct: 54 VDPNAEEDLAPTATHVGSELSQEDLDDDEDEDEEDGDDDSADDDNS 99
Score = 26.8 bits (58), Expect = 2.0
Identities = 7/46 (15%), Positives = 19/46 (41%)
Query: 164 EEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEE 209
+ EE+ E+ E+E+EE+ +++ +++
Sbjct: 54 VDPNAEEDLAPTATHVGSELSQEDLDDDEDEDEEDGDDDSADDDNS 99
Score = 26.0 bits (56), Expect = 3.9
Identities = 7/46 (15%), Positives = 21/46 (45%)
Query: 165 EEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEE 210
+ EE+ +E+ +E+E+EE+ +++ +++
Sbjct: 54 VDPNAEEDLAPTATHVGSELSQEDLDDDEDEDEEDGDDDSADDDNS 99
>d2ayua1 d.305.1.1 (A:70-370) Nucleosome assembly protein, NAP
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 301
Score = 27.3 bits (60), Expect = 1.3
Identities = 12/40 (30%), Positives = 20/40 (50%)
Query: 172 EEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
+E+ E+ G E E E +EEE+ + + EEE+
Sbjct: 73 QEQPKPEQIAKGQEIVESLNETELLVDEEEKAQNDSEEEQ 112
Score = 26.1 bits (57), Expect = 3.7
Identities = 11/42 (26%), Positives = 21/42 (50%)
Query: 164 EEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEE 205
+E+ + E+ +G E E E EE+ + + EEE+ +
Sbjct: 73 QEQPKPEQIAKGQEIVESLNETELLVDEEEKAQNDSEEEQVK 114
Score = 25.7 bits (56), Expect = 4.0
Identities = 7/27 (25%), Positives = 12/27 (44%)
Query: 185 GEEEGGGEEEEEEEEEEEEEEEEEEEE 211
G+E+ E+ + +E E E E
Sbjct: 72 GQEQPKPEQIAKGQEIVESLNETELLV 98
>d1wp5a_ b.68.10.1 (A:) Topoisomerase IV subunit A, ParC, C-terminal
domain {Bacillus stearothermophilus [TaxId: 1422]}
Length = 323
Score = 27.2 bits (59), Expect = 1.5
Identities = 4/16 (25%), Positives = 7/16 (43%)
Query: 192 EEEEEEEEEEEEEEEE 207
E E++ E+ E
Sbjct: 306 EAEDKTEKLAAALEHH 321
Score = 27.2 bits (59), Expect = 1.5
Identities = 4/16 (25%), Positives = 7/16 (43%)
Query: 193 EEEEEEEEEEEEEEEE 208
E E++ E+ E
Sbjct: 306 EAEDKTEKLAAALEHH 321
Score = 27.2 bits (59), Expect = 1.5
Identities = 4/16 (25%), Positives = 7/16 (43%)
Query: 194 EEEEEEEEEEEEEEEE 209
E E++ E+ E
Sbjct: 306 EAEDKTEKLAAALEHH 321
Score = 27.2 bits (59), Expect = 1.5
Identities = 4/16 (25%), Positives = 7/16 (43%)
Query: 195 EEEEEEEEEEEEEEEE 210
E E++ E+ E
Sbjct: 306 EAEDKTEKLAAALEHH 321
Score = 27.2 bits (59), Expect = 1.5
Identities = 4/16 (25%), Positives = 7/16 (43%)
Query: 196 EEEEEEEEEEEEEEEE 211
E E++ E+ E
Sbjct: 306 EAEDKTEKLAAALEHH 321
Score = 26.1 bits (56), Expect = 3.6
Identities = 5/18 (27%), Positives = 8/18 (44%)
Query: 162 KKEEEEEEEEEEEGGEEE 179
K E E++ E+ E
Sbjct: 304 KVEAEDKTEKLAAALEHH 321
Score = 25.3 bits (54), Expect = 6.6
Identities = 5/18 (27%), Positives = 8/18 (44%)
Query: 163 KEEEEEEEEEEEGGEEEE 180
K E E++ E+ E
Sbjct: 304 KVEAEDKTEKLAAALEHH 321
>d1k4ta3 e.15.1.1 (A:201-430) Eukaryotic DNA topoisomerase I,
N-terminal DNA-binding fragment {Human (Homo sapiens)
[TaxId: 9606]}
Length = 230
Score = 26.6 bits (59), Expect = 2.1
Identities = 8/29 (27%), Positives = 17/29 (58%)
Query: 151 LRKKKKKKKKKKKEEEEEEEEEEEGGEEE 179
+ + + +K+ KEE+ + +EE E +E
Sbjct: 109 FKAQTEARKQMSKEEKLKIKEENEKLLKE 137
Score = 25.4 bits (56), Expect = 4.6
Identities = 7/28 (25%), Positives = 17/28 (60%)
Query: 154 KKKKKKKKKKEEEEEEEEEEEGGEEEEE 181
K + + +K+ +EE+ + +EE + +E
Sbjct: 110 KAQTEARKQMSKEEKLKIKEENEKLLKE 137
Score = 25.1 bits (55), Expect = 6.0
Identities = 8/30 (26%), Positives = 17/30 (56%)
Query: 153 KKKKKKKKKKKEEEEEEEEEEEGGEEEEEG 182
K + + +K+ +EE+ + +EE +E G
Sbjct: 110 KAQTEARKQMSKEEKLKIKEENEKLLKEYG 139
>d1qkla_ a.143.1.2 (A:) RPB6 {Human (Homo sapiens) [TaxId: 9606]}
Length = 127
Score = 25.9 bits (57), Expect = 2.3
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 178 EEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEE 210
+ E+ G++ EE+E ++ E EEE +E
Sbjct: 3 DNEDNFDGDDFDDVEEDEGLDDLENAEEEGQEN 35
Score = 25.5 bits (56), Expect = 3.4
Identities = 8/26 (30%), Positives = 16/26 (61%)
Query: 186 EEEGGGEEEEEEEEEEEEEEEEEEEE 211
E+ G++ ++ EE+E ++ E EE
Sbjct: 5 EDNFDGDDFDDVEEDEGLDDLENAEE 30
Score = 24.8 bits (54), Expect = 5.8
Identities = 10/35 (28%), Positives = 18/35 (51%)
Query: 177 EEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
+ E+ G + + E+E ++ E EEE +E E
Sbjct: 3 DNEDNFDGDDFDDVEEDEGLDDLENAEEEGQENVE 37
Score = 24.4 bits (53), Expect = 7.1
Identities = 10/48 (20%), Positives = 20/48 (41%)
Query: 164 EEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEEEE 211
+ E+ + ++ EE+EG E E +E E E + ++
Sbjct: 3 DNEDNFDGDDFDDVEEDEGLDDLENAEEEGQENVEILPSGERPQANQK 50
>d1oisa_ e.15.1.1 (A:) Eukaryotic DNA topoisomerase I, N-terminal
DNA-binding fragment {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 223
Score = 26.2 bits (58), Expect = 2.6
Identities = 8/29 (27%), Positives = 18/29 (62%)
Query: 151 LRKKKKKKKKKKKEEEEEEEEEEEGGEEE 179
+ +K++KK+ +E+++ E E EE+
Sbjct: 101 FQLQKEQKKQLTSQEKKQIRLEREKFEED 129
Score = 26.2 bits (58), Expect = 2.9
Identities = 7/28 (25%), Positives = 18/28 (64%)
Query: 154 KKKKKKKKKKEEEEEEEEEEEGGEEEEE 181
+ +K++KK+ +E+++ E + EE+
Sbjct: 102 QLQKEQKKQLTSQEKKQIRLEREKFEED 129
Score = 25.4 bits (56), Expect = 5.1
Identities = 10/34 (29%), Positives = 19/34 (55%)
Query: 141 KMLEPLLVLTLRKKKKKKKKKKKEEEEEEEEEEE 174
KM + + +KK+ ++KK+ E E+ EE+
Sbjct: 96 KMFDYFQLQKEQKKQLTSQEKKQIRLEREKFEED 129
>d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato
(Solanum tuberosum) [TaxId: 4113]}
Length = 364
Score = 26.1 bits (56), Expect = 3.4
Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 18/64 (28%)
Query: 111 VMRIVNEPTAAALAYGLDKNLKGERNVKLPKMLEPLLVLTLRKKKKKKKKKKKEEEEEEE 170
V IVN+P+ KN+ + +L K++ K++ +K ++EE EE
Sbjct: 319 VRSIVNDPS---------KNVSSKEVARLKKLVSYW---------KEQAGRKGDDEELEE 360
Query: 171 EEEE 174
++E
Sbjct: 361 IQDE 364
>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 319
Score = 26.0 bits (56), Expect = 3.9
Identities = 10/58 (17%), Positives = 20/58 (34%)
Query: 152 RKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEEEEE 209
+ K+ K +K K E E G E + + E+ + +++ E
Sbjct: 152 KFAKRIKLQKIKLESAIAEHLSGIGVNENDVWEAMHKLNLPEDPTKWSQDDLLAFASE 209
>d1xu6a_ g.16.3.1 (A:) Variant surface glycoprotein MITAT 1.2, VSG
221, C-terminal domain {Trypanosoma brucei brucei
[TaxId: 5702]}
Length = 80
Score = 24.5 bits (53), Expect = 4.2
Identities = 9/65 (13%), Positives = 29/65 (44%)
Query: 147 LVLTLRKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGEEEGGGEEEEEEEEEEEEEEE 206
++ L +K K + +++ E E ++ E + + ++ ++EE ++ +
Sbjct: 4 MLEVLTQKHKPAESQQQAAETEGSCNKKDQNECKSPCKWHNDAENKKCTLDKEEAKKVAD 63
Query: 207 EEEEE 211
E ++
Sbjct: 64 ETAKD 68
>d1h3za_ b.34.9.2 (A:) Hypothetical protein SPBC215.07c {Fission
yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Length = 108
Score = 25.0 bits (54), Expect = 4.3
Identities = 6/41 (14%), Positives = 14/41 (34%)
Query: 140 PKMLEPLLVLTLRKKKKKKKKKKKEEEEEEEEEEEGGEEEE 180
L PL + + +K K K + + + + +
Sbjct: 63 SDSLTPLTSEAISQFLEKPKPKTASLIKAYKMAQSTPDLDS 103
>d1l4sa_ d.204.1.1 (A:) Ribosome binding protein Y (YfiA homologue)
{Escherichia coli [TaxId: 562]}
Length = 112
Score = 24.5 bits (53), Expect = 6.2
Identities = 7/29 (24%), Positives = 13/29 (44%)
Query: 151 LRKKKKKKKKKKKEEEEEEEEEEEGGEEE 179
L K + K + ++ ++ E EEE
Sbjct: 84 LNKLQHKGEARRAATSVKDANFVEEVEEE 112
>d1j5pa4 c.2.1.3 (A:-1-108,A:220-241) Hypothetical protein TM1643
{Thermotoga maritima [TaxId: 2336]}
Length = 132
Score = 24.6 bits (53), Expect = 7.0
Identities = 9/69 (13%), Positives = 25/69 (36%), Gaps = 12/69 (17%)
Query: 70 KETAEAYLGHSVRDAVITVPAYFNDAQRQATKD------------AGAIAGLNVMRIVNE 117
KE + L + V +I+ A+ ++ R+ +G++ + +
Sbjct: 64 KEYSLQILKNPVNYIIISTSAFADEVFRERFFSELKNSPARVFFPSGSMLTVYSILRTLR 123
Query: 118 PTAAALAYG 126
+ + +G
Sbjct: 124 NLESKIIFG 132
>d1taza_ a.211.1.2 (A:) Catalytic domain of cyclic nucleotide
phosphodiesterase 1b, PDE1B {Human (Homo sapiens)
[TaxId: 9606]}
Length = 357
Score = 25.0 bits (54), Expect = 7.7
Identities = 5/36 (13%), Positives = 14/36 (38%)
Query: 139 LPKMLEPLLVLTLRKKKKKKKKKKKEEEEEEEEEEE 174
K ++PL + K + + ++ + E +
Sbjct: 295 AEKSVQPLADEDSKSKNQPSFQWRQPSLDVEVGDPN 330
>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}
Length = 524
Score = 25.3 bits (54), Expect = 7.7
Identities = 17/79 (21%), Positives = 24/79 (30%), Gaps = 1/79 (1%)
Query: 127 LDKNLKGERNVKLPKMLEPLLVLTLRKKKKKKKKKKKEEEEEEEEEEEGGEEEEEGGGGE 186
K N + + V LR K+ +E + E E+ G
Sbjct: 354 FTKGTVANPNQD-KNCTDDVWVYDLRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPR 412
Query: 187 EEGGGEEEEEEEEEEEEEE 205
EG EE E + EE
Sbjct: 413 TEGEWSFNAEETEVADSEE 431
>d1or7a2 a.177.1.1 (A:-1-111) SigmaE factor (RpoE) {Escherichia coli
[TaxId: 562]}
Length = 113
Score = 24.3 bits (52), Expect = 8.0
Identities = 5/30 (16%), Positives = 9/30 (30%)
Query: 147 LVLTLRKKKKKKKKKKKEEEEEEEEEEEGG 176
+ ++ + E E E GG
Sbjct: 83 TAKNYLVAQGRRPPSSDVDAIEAENFESGG 112
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.305 0.128 0.350
Gapped
Lambda K H
0.267 0.0634 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 808,922
Number of extensions: 41353
Number of successful extensions: 701
Number of sequences better than 10.0: 1
Number of HSP's gapped: 371
Number of HSP's successfully gapped: 131
Length of query: 211
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 130
Effective length of database: 1,295,466
Effective search space: 168410580
Effective search space used: 168410580
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 51 (23.6 bits)