BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4710
(192 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex
pdb|3TVD|B Chain B, Crystal Structure Of Mouse Rhoa-Gtp Complex
Length = 193
Score = 350 bits (899), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 170/193 (88%), Positives = 179/193 (92%), Gaps = 1/193 (0%)
Query: 1 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDT 60
MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVD KQVELALWDT
Sbjct: 1 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDT 60
Query: 61 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 120
AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD
Sbjct: 61 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 120
Query: 121 LRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
LRND +T +EL KMKQEPVKPEEGR MA +I AF Y+ECSAK+K+GVREVFE ATRAALQ
Sbjct: 121 LRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 180
Query: 181 VKK-KKKGRCRLL 192
++ KKK C +L
Sbjct: 181 ARRGKKKSGCLIL 193
>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex
With Rhogdi In Its Active Gppnhp-Bound Form
Length = 195
Score = 350 bits (899), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 170/193 (88%), Positives = 179/193 (92%), Gaps = 1/193 (0%)
Query: 1 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDT 60
MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVD KQVELALWDT
Sbjct: 3 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDT 62
Query: 61 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 120
AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD
Sbjct: 63 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 122
Query: 121 LRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
LRND +T +EL KMKQEPVKPEEGR MA +I AF Y+ECSAK+K+GVREVFE ATRAALQ
Sbjct: 123 LRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 182
Query: 181 VKK-KKKGRCRLL 192
++ KKK C +L
Sbjct: 183 ARRGKKKSGCLVL 195
>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|D Chain D, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|F Chain F, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|H Chain H, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|2RGN|C Chain C, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|F Chain F, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 196
Score = 350 bits (898), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 170/193 (88%), Positives = 179/193 (92%), Gaps = 1/193 (0%)
Query: 1 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDT 60
MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVD KQVELALWDT
Sbjct: 4 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDT 63
Query: 61 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 120
AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD
Sbjct: 64 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 123
Query: 121 LRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
LRND +T +EL KMKQEPVKPEEGR MA +I AF Y+ECSAK+K+GVREVFE ATRAALQ
Sbjct: 124 LRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 183
Query: 181 VKK-KKKGRCRLL 192
++ KKK C +L
Sbjct: 184 ARRGKKKSGCLVL 196
>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|D Chain D, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|F Chain F, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|H Chain H, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
Length = 192
Score = 350 bits (898), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 167/186 (89%), Positives = 175/186 (94%)
Query: 1 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDT 60
MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVD KQVELALWDT
Sbjct: 3 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDT 62
Query: 61 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 120
AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD
Sbjct: 63 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 122
Query: 121 LRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
LRND +T +EL KMKQEPVKPEEGR MA +I AF Y+ECSAK+K+GVREVFE ATRAALQ
Sbjct: 123 LRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 182
Query: 181 VKKKKK 186
++ KK
Sbjct: 183 ARRGKK 188
>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap
pdb|1FTN|A Chain A, Crystal Structure Of The Human RhoaGDP COMPLEX
Length = 193
Score = 347 bits (889), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 169/193 (87%), Positives = 178/193 (92%), Gaps = 1/193 (0%)
Query: 1 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDT 60
MAAIRKKLVIVGDGACGKTCLLIV SKDQFPEVYVPTVFENYVADIEVD KQVELALWDT
Sbjct: 1 MAAIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDT 60
Query: 61 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 120
AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD
Sbjct: 61 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 120
Query: 121 LRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
LRND +T +EL KMKQEPVKPEEGR MA +I AF Y+ECSAK+K+GVREVFE ATRAALQ
Sbjct: 121 LRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 180
Query: 181 VKK-KKKGRCRLL 192
++ KKK C +L
Sbjct: 181 ARRGKKKSGCLVL 193
>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
pdb|1CC0|C Chain C, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
Length = 190
Score = 345 bits (886), Expect = 7e-96, Method: Compositional matrix adjust.
Identities = 166/186 (89%), Positives = 174/186 (93%)
Query: 1 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDT 60
MAAIRKKLVIVGDGACGKTCLLIV SKDQFPEVYVPTVFENYVADIEVD KQVELALWDT
Sbjct: 1 MAAIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDT 60
Query: 61 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 120
AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD
Sbjct: 61 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 120
Query: 121 LRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
LRND +T +EL KMKQEPVKPEEGR MA +I AF Y+ECSAK+K+GVREVFE ATRAALQ
Sbjct: 121 LRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 180
Query: 181 VKKKKK 186
++ KK
Sbjct: 181 ARRGKK 186
>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
pdb|1S1C|B Chain B, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
Length = 183
Score = 345 bits (885), Expect = 9e-96, Method: Compositional matrix adjust.
Identities = 165/180 (91%), Positives = 171/180 (95%)
Query: 1 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDT 60
MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVD KQVELALWDT
Sbjct: 3 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDT 62
Query: 61 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 120
AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD
Sbjct: 63 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 122
Query: 121 LRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
LRND +T +EL KMKQEPVKPEEGR MA +I AF Y+ECSAK+K+GVREVFE ATRAALQ
Sbjct: 123 LRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 182
>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
pdb|3KZ1|F Chain F, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
Length = 182
Score = 344 bits (883), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 165/180 (91%), Positives = 171/180 (95%)
Query: 1 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDT 60
MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVD KQVELALWDT
Sbjct: 2 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDT 61
Query: 61 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 120
AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD
Sbjct: 62 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 121
Query: 121 LRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
LRND +T +EL KMKQEPVKPEEGR MA +I AF Y+ECSAK+K+GVREVFE ATRAALQ
Sbjct: 122 LRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 181
>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
pdb|1Z2C|C Chain C, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
Length = 193
Score = 343 bits (881), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 165/188 (87%), Positives = 174/188 (92%)
Query: 1 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDT 60
MAAIRKKLVIVGDGACGKTCLLIV SKDQFPEVYVPTVFENY+ADIEVD KQVELALWDT
Sbjct: 1 MAAIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDT 60
Query: 61 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 120
AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD
Sbjct: 61 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 120
Query: 121 LRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
LR D +T +EL KMKQEPV+ EEGR MA +I+AF YLECSAK+KEGVREVFE ATRA LQ
Sbjct: 121 LRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGLQ 180
Query: 181 VKKKKKGR 188
V+K K+ R
Sbjct: 181 VRKNKRRR 188
>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|C Chain C, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|D Chain D, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LWN|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LWN|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LXR|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa And Gdp (Complex
C)
Length = 185
Score = 342 bits (878), Expect = 6e-95, Method: Compositional matrix adjust.
Identities = 164/179 (91%), Positives = 170/179 (94%)
Query: 2 AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTA 61
AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVD KQVELALWDTA
Sbjct: 6 AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTA 65
Query: 62 GQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDL 121
GQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDL
Sbjct: 66 GQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDL 125
Query: 122 RNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
RND +T +EL KMKQEPVKPEEGR MA +I AF Y+ECSAK+K+GVREVFE ATRAALQ
Sbjct: 126 RNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 184
>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex
pdb|2GCO|B Chain B, Crystal Structure Of The Human Rhoc-gppnhp Complex
pdb|2GCP|A Chain A, Crystal Structure Of The Human Rhoc-Gsp Complex
Length = 201
Score = 342 bits (876), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 163/181 (90%), Positives = 170/181 (93%)
Query: 1 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDT 60
MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY+ADIEVD KQVELALWDT
Sbjct: 21 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDT 80
Query: 61 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 120
AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD
Sbjct: 81 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 140
Query: 121 LRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
LR D +T +EL KMKQEPV+ EEGR MA +I+AF YLECSAK+KEGVREVFE ATRA LQ
Sbjct: 141 LRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGLQ 200
Query: 181 V 181
V
Sbjct: 201 V 201
>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The
Effector Domain Of The Protein Kinase PknPRK1
pdb|1A2B|A Chain A, Human Rhoa Complexed With Gtp Analogue
Length = 182
Score = 341 bits (875), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 164/180 (91%), Positives = 170/180 (94%)
Query: 1 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDT 60
MAAIRKKLVIVGD ACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVD KQVELALWDT
Sbjct: 2 MAAIRKKLVIVGDVACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDT 61
Query: 61 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 120
AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD
Sbjct: 62 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 121
Query: 121 LRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
LRND +T +EL KMKQEPVKPEEGR MA +I AF Y+ECSAK+K+GVREVFE ATRAALQ
Sbjct: 122 LRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 181
>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap
Domain Of Arhgap20
Length = 180
Score = 341 bits (874), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 164/180 (91%), Positives = 170/180 (94%)
Query: 1 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDT 60
MAAIRKKLVIVGDGACGKTCLLIV SKDQFPEVYVPTVFENYVADIEVD KQVELALWDT
Sbjct: 1 MAAIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDT 60
Query: 61 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 120
AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD
Sbjct: 61 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 120
Query: 121 LRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
LRND +T +EL KMKQEPVKPEEGR MA +I AF Y+ECSAK+K+GVREVFE ATRAALQ
Sbjct: 121 LRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 180
>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex
Length = 201
Score = 338 bits (867), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 162/181 (89%), Positives = 169/181 (93%)
Query: 1 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDT 60
MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY+ADIEVD KQVELALWDT
Sbjct: 21 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDT 80
Query: 61 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 120
AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF PNVPIILVGNKKD
Sbjct: 81 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFXPNVPIILVGNKKD 140
Query: 121 LRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
LR D +T +EL KMKQEPV+ EEGR MA +I+AF YLECSAK+KEGVREVFE ATRA LQ
Sbjct: 141 LRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGLQ 200
Query: 181 V 181
V
Sbjct: 201 V 201
>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|1XCG|F Chain F, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|3T06|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
pdb|3T06|F Chain F, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
Length = 178
Score = 337 bits (863), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 162/178 (91%), Positives = 168/178 (94%)
Query: 3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAG 62
AIRKKLVIVGDGACGKTCLLIV SKDQFPEVYVPTVFENYVADIEVD KQVELALWDTAG
Sbjct: 1 AIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAG 60
Query: 63 QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLR 122
QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLR
Sbjct: 61 QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLR 120
Query: 123 NDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
ND +T +EL KMKQEPVKPEEGR MA +I AF Y+ECSAK+K+GVREVFE ATRAALQ
Sbjct: 121 NDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 178
>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With
Gdp
Length = 180
Score = 335 bits (860), Expect = 6e-93, Method: Compositional matrix adjust.
Identities = 161/180 (89%), Positives = 167/180 (92%)
Query: 1 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDT 60
MAAIRKKLVIVGD ACGKTCLLIVFSKDQFP VYVPTVFENYVADIEVD KQVELALWDT
Sbjct: 1 MAAIRKKLVIVGDVACGKTCLLIVFSKDQFPAVYVPTVFENYVADIEVDGKQVELALWDT 60
Query: 61 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 120
AGQEDYDR RPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD
Sbjct: 61 AGQEDYDRARPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 120
Query: 121 LRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
LRND +T +EL KMKQEPVKP EGR MA +I AF Y+ECSAK+K+GVREVFE ATRAALQ
Sbjct: 121 LRNDEHTARELAKMKQEPVKPAEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 180
>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX
Length = 177
Score = 334 bits (857), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 161/177 (90%), Positives = 167/177 (94%)
Query: 3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAG 62
AIRKKLVIVGDGACGKTCLLIV SKDQFPEVYVPTVFENYVADIEVD KQVELALWDTAG
Sbjct: 1 AIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAG 60
Query: 63 QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLR 122
QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLR
Sbjct: 61 QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLR 120
Query: 123 NDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAAL 179
ND +T +EL KMKQEPVKPEEGR MA +I AF Y+ECSAK+K+GVREVFE ATRAAL
Sbjct: 121 NDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAAL 177
>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa
Mutant (Q63l)
Length = 184
Score = 332 bits (852), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 160/179 (89%), Positives = 167/179 (93%)
Query: 2 AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTA 61
+ IRKKLVIVGDGACGKTCLLIV SKDQFPEVYVPTVFENYVADIEVD KQVELALWDTA
Sbjct: 5 SPIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTA 64
Query: 62 GQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDL 121
G EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDL
Sbjct: 65 GLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDL 124
Query: 122 RNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
RND +T +EL KMKQEPVKPEEGR MA +I AF Y+ECSAK+K+GVREVFE ATRAALQ
Sbjct: 125 RNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 183
>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State
Length = 207
Score = 325 bits (834), Expect = 8e-90, Method: Compositional matrix adjust.
Identities = 153/179 (85%), Positives = 166/179 (92%)
Query: 2 AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTA 61
+ IRKKLV+VGDGACGKTCLLIVFSKD+FPEVYVPTVFENYVADIEVD KQVELALWDTA
Sbjct: 22 SMIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTA 81
Query: 62 GQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDL 121
GQEDYDRLRPLSYPDTDVILMCFS+DSPDSLENIPEKW PEVKHFCPNVPIILV NKKDL
Sbjct: 82 GQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDL 141
Query: 122 RNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
R+D + EL +MKQEPV+ ++GRAMA +I A+ YLECSAK+KEGVREVFETATRAALQ
Sbjct: 142 RSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRAALQ 200
>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|D Chain D, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|F Chain F, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
Length = 188
Score = 280 bits (715), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 131/181 (72%), Positives = 152/181 (83%)
Query: 3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAG 62
+IR+KLVIVGDGACGKTCLLIV SK QFPEVYVPTVFENYVAD+EVD ++VELALWDTAG
Sbjct: 8 SIRRKLVIVGDGACGKTCLLIVNSKGQFPEVYVPTVFENYVADVEVDGRRVELALWDTAG 67
Query: 63 QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLR 122
QEDYDRLRPLSYPD++V+L+CFSID PDSLEN+ EKW EV HFC VPIILVG K DLR
Sbjct: 68 QEDYDRLRPLSYPDSNVVLICFSIDLPDSLENVQEKWIAEVLHFCQGVPIILVGCKVDLR 127
Query: 123 NDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVK 182
NDP TI++L + Q+PV +EG+++A +I A Y ECSAK+ GVREVFE ATRA+L K
Sbjct: 128 NDPQTIEQLRQEGQQPVTSQEGQSVADQIGATGYYECSAKTGYGVREVFEAATRASLMGK 187
Query: 183 K 183
Sbjct: 188 S 188
>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With
Arfaptin (P21)
pdb|1I4L|D Chain D, Crystal Structure Analysis Of Rac1-Gdp In Complex With
Arfaptin (P41)
Length = 192
Score = 227 bits (579), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 114/195 (58%), Positives = 143/195 (73%), Gaps = 6/195 (3%)
Query: 1 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDT 60
M AI K V+VGDGA GKTCLLI ++ + FP Y+PTVF+NY A++ VD K V L LWDT
Sbjct: 1 MQAI--KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDT 58
Query: 61 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 120
AGQEDYDRLRPLSYP TDV L+CFS+ SP S EN+ KW PEV+H CPN PIILVG K D
Sbjct: 59 AGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLD 118
Query: 121 LRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAAL- 179
LR+D +TI++L + K P+ +G AMA++I A YLECSA ++ G++ VF+ A RA L
Sbjct: 119 LRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLC 178
Query: 180 --QVKKKKKGRCRLL 192
VKK+K+ +C LL
Sbjct: 179 PPPVKKRKR-KCLLL 192
>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
pdb|1HH4|B Chain B, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
Length = 192
Score = 226 bits (576), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 111/189 (58%), Positives = 140/189 (74%), Gaps = 4/189 (2%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
K V+VGDGA GKTCLLI ++ + FP Y+PTVF+NY A++ VD K V L LWDTAGQEDY
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDY 64
Query: 67 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPN 126
DRLRPLSYP TDV L+CFS+ SP S EN+ KW PEV+H CPN PIILVG K DLR+D +
Sbjct: 65 DRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKD 124
Query: 127 TIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAAL---QVKK 183
TI++L + K P+ +G AMA++I A YLECSA ++ G++ VF+ A RA L VKK
Sbjct: 125 TIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPPPVKK 184
Query: 184 KKKGRCRLL 192
+K+ +C LL
Sbjct: 185 RKR-KCLLL 192
>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex
Length = 192
Score = 225 bits (573), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 110/194 (56%), Positives = 143/194 (73%), Gaps = 4/194 (2%)
Query: 1 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDT 60
M AI K V+VGDGA GKTCLLI ++ + FP Y+PTVF+NY A++ VDSK V L LWDT
Sbjct: 1 MQAI--KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDT 58
Query: 61 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 120
AGQEDYDRLRPLSYP TDV L+CFS+ SP S EN+ KW PEV+H CP+ PIILVG K D
Sbjct: 59 AGQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLD 118
Query: 121 LRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAAL- 179
LR+D +TI++L + K P+ +G A+A++I++ YLECSA ++ G++ VF+ A RA L
Sbjct: 119 LRDDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVLC 178
Query: 180 -QVKKKKKGRCRLL 192
Q +++K C LL
Sbjct: 179 PQPTRQQKRACSLL 192
>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1.
pdb|2YIN|D Chain D, Structure Of The Complex Between Dock2 And Rac1
Length = 196
Score = 225 bits (573), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 107/179 (59%), Positives = 133/179 (74%), Gaps = 2/179 (1%)
Query: 1 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDT 60
M AI K V+VGDGA GKTCLLI ++ + FP Y+PTVF+NY A++ VD K V L LWDT
Sbjct: 20 MQAI--KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDT 77
Query: 61 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 120
AGQEDYDRLRPLSYP TDV L+CFS+ SP S EN+ KW PEV+H CPN PIILVG K D
Sbjct: 78 AGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLD 137
Query: 121 LRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAAL 179
LR+D +TI++L + K P+ +G AMA++I A YLECSA ++ G++ VF+ A RA L
Sbjct: 138 LRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 196
>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With
Arfaptin
pdb|2RMK|A Chain A, Rac1PRK1 COMPLEX
Length = 192
Score = 225 bits (573), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 113/195 (57%), Positives = 142/195 (72%), Gaps = 6/195 (3%)
Query: 1 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDT 60
M AI K V+VGDGA GKTCLLI ++ + FP Y+PTVF+NY A++ VD K V L LWDT
Sbjct: 1 MQAI--KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDT 58
Query: 61 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 120
AG EDYDRLRPLSYP TDV L+CFS+ SP S EN+ KW PEV+H CPN PIILVG K D
Sbjct: 59 AGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLD 118
Query: 121 LRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAAL- 179
LR+D +TI++L + K P+ +G AMA++I A YLECSA ++ G++ VF+ A RA L
Sbjct: 119 LRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLC 178
Query: 180 --QVKKKKKGRCRLL 192
VKK+K+ +C LL
Sbjct: 179 PPPVKKRKR-KCLLL 192
>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|B Chain B, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|C Chain C, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SU8|A Chain A, Crystal Structure Of A Truncated Intracellular Domain Of
Plexin-B1 In Complex With Rac1
Length = 184
Score = 224 bits (572), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 107/180 (59%), Positives = 134/180 (74%), Gaps = 2/180 (1%)
Query: 1 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDT 60
M AI K V+VGDGA GKTCLLI ++ + FP Y+PTVF+NY A++ VD K V L LWDT
Sbjct: 1 MQAI--KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDT 58
Query: 61 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 120
AGQEDYDRLRPLSYP TDV L+CFS+ SP S EN+ KW PEV+H CPN PIILVG K D
Sbjct: 59 AGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLD 118
Query: 121 LRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
LR+D +TI++L + K P+ +G AMA++I A YLECSA ++ G++ VF+ A RA L+
Sbjct: 119 LRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLK 178
>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta
2
Length = 178
Score = 224 bits (572), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 107/180 (59%), Positives = 133/180 (73%), Gaps = 2/180 (1%)
Query: 1 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDT 60
M AI K V+VGDGA GKTCLLI ++ + FP Y+PTVF+NY A++ VD K V L LWDT
Sbjct: 1 MQAI--KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDT 58
Query: 61 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 120
AGQEDYDRLRPLSYP TDV L+CFS+ SP S EN+ KW PEV+H CPN PIILVG K D
Sbjct: 59 AGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLD 118
Query: 121 LRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
LR+D +TI++L + K P+ +G AMA++I A YLECSA ++ G++ VF+ A RA L
Sbjct: 119 LRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLS 178
>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|D Chain D, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|F Chain F, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|H Chain H, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|2NZ8|A Chain A, N-Terminal Dhph Cassette Of Trio In Complex With
Nucleotide- Free Rac1
pdb|3BJI|C Chain C, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
pdb|3BJI|D Chain D, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
Length = 177
Score = 224 bits (571), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 107/179 (59%), Positives = 133/179 (74%), Gaps = 2/179 (1%)
Query: 1 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDT 60
M AI K V+VGDGA GKTCLLI ++ + FP Y+PTVF+NY A++ VD K V L LWDT
Sbjct: 1 MQAI--KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDT 58
Query: 61 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 120
AGQEDYDRLRPLSYP TDV L+CFS+ SP S EN+ KW PEV+H CPN PIILVG K D
Sbjct: 59 AGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLD 118
Query: 121 LRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAAL 179
LR+D +TI++L + K P+ +G AMA++I A YLECSA ++ G++ VF+ A RA L
Sbjct: 119 LRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 177
>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1
pdb|3TH5|B Chain B, Crystal Structure Of Wild-Type Rac1
Length = 204
Score = 224 bits (571), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 104/173 (60%), Positives = 130/173 (75%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
K V+VGDGA GKTCLLI ++ + FP Y+PTVF+NY A++ VD K V L LWDTAGQEDY
Sbjct: 32 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDY 91
Query: 67 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPN 126
DRLRPLSYP TDV L+CFS+ SP S EN+ KW PEV+H CPN PIILVG K DLR+D +
Sbjct: 92 DRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKD 151
Query: 127 TIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAAL 179
TI++L + K P+ +G AMA++I A YLECSA ++ G++ VF+ A RA L
Sbjct: 152 TIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 204
>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX
Length = 192
Score = 224 bits (571), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 110/189 (58%), Positives = 139/189 (73%), Gaps = 4/189 (2%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
K V+VGDGA GKTCLLI ++ + FP Y+PTVF+NY A++ VD K V L LWDTAG EDY
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDY 64
Query: 67 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPN 126
DRLRPLSYP TDV L+CFS+ SP S EN+ KW PEV+H CPN PIILVG K DLR+D +
Sbjct: 65 DRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKD 124
Query: 127 TIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAAL---QVKK 183
TI++L + K P+ +G AMA++I A YLECSA ++ G++ VF+ A RA L VKK
Sbjct: 125 TIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPPPVKK 184
Query: 184 KKKGRCRLL 192
+K+ +C LL
Sbjct: 185 RKR-KCLLL 192
>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The
Vav1 Exchange Factor
Length = 184
Score = 223 bits (569), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 107/179 (59%), Positives = 133/179 (74%), Gaps = 2/179 (1%)
Query: 1 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDT 60
M AI K V+VGDGA GKTCLLI ++ + FP Y+PTVF+NY A++ VD K V L LWDT
Sbjct: 1 MQAI--KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDT 58
Query: 61 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 120
AGQEDYDRLRPLSYP TDV L+CFS+ SP S EN+ KW PEV+H CPN PIILVG K D
Sbjct: 59 AGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLD 118
Query: 121 LRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAAL 179
LR+D +TI++L + K P+ +G AMA++I A YLECSA ++ G++ VF+ A RA L
Sbjct: 119 LRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 177
>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1
pdb|2H7V|B Chain B, Co-crystal Structure Of Ypka-rac1
pdb|2P2L|A Chain A, Rac1-gdp-zinc Complex
pdb|2P2L|B Chain B, Rac1-gdp-zinc Complex
pdb|2P2L|C Chain C, Rac1-gdp-zinc Complex
Length = 188
Score = 223 bits (568), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 107/179 (59%), Positives = 133/179 (74%), Gaps = 2/179 (1%)
Query: 1 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDT 60
M AI K V+VGDGA GKTCLLI ++ + FP Y+PTVF+NY A++ VD K V L LWDT
Sbjct: 5 MQAI--KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDT 62
Query: 61 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 120
AGQEDYDRLRPLSYP TDV L+CFS+ SP S EN+ KW PEV+H CPN PIILVG K D
Sbjct: 63 AGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLD 122
Query: 121 LRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAAL 179
LR+D +TI++L + K P+ +G AMA++I A YLECSA ++ G++ VF+ A RA L
Sbjct: 123 LRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 181
>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase
And Gtpase Activating Protein Sptp Bound To Rac1
Length = 184
Score = 223 bits (567), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 107/179 (59%), Positives = 133/179 (74%), Gaps = 2/179 (1%)
Query: 1 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDT 60
M AI K V+VGDGA GKTCLLI ++ + FP Y+PTVF+NY A++ VD K V L LWDT
Sbjct: 1 MQAI--KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDT 58
Query: 61 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 120
AGQEDYDRLRPLSYP TDV L+CFS+ SP S EN+ KW PEV+H CPN PIILVG K D
Sbjct: 59 AGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLD 118
Query: 121 LRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAAL 179
LR+D +TI++L + K P+ +G AMA++I A YLECSA ++ G++ VF+ A RA L
Sbjct: 119 LRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 177
>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
pdb|3B13|D Chain D, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
Length = 184
Score = 223 bits (567), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 106/179 (59%), Positives = 132/179 (73%), Gaps = 2/179 (1%)
Query: 1 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDT 60
M AI K V+VGDGA GK CLLI ++ + FP Y+PTVF+NY A++ VD K V L LWDT
Sbjct: 8 MQAI--KCVVVGDGAVGKNCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDT 65
Query: 61 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 120
AGQEDYDRLRPLSYP TDV L+CFS+ SP S EN+ KW PEV+H CPN PIILVG K D
Sbjct: 66 AGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLD 125
Query: 121 LRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAAL 179
LR+D +TI++L + K P+ +G AMA++I A YLECSA ++ G++ VF+ A RA L
Sbjct: 126 LRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 184
>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant
pdb|4GZM|B Chain B, Crystal Structure Of Rac1 F28l Mutant
Length = 204
Score = 222 bits (566), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 103/173 (59%), Positives = 129/173 (74%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
K V+VGDGA GKTCLLI ++ + P Y+PTVF+NY A++ VD K V L LWDTAGQEDY
Sbjct: 32 KCVVVGDGAVGKTCLLISYTTNALPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDY 91
Query: 67 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPN 126
DRLRPLSYP TDV L+CFS+ SP S EN+ KW PEV+H CPN PIILVG K DLR+D +
Sbjct: 92 DRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKD 151
Query: 127 TIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAAL 179
TI++L + K P+ +G AMA++I A YLECSA ++ G++ VF+ A RA L
Sbjct: 152 TIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 204
>pdb|1MH1|A Chain A, Small G-Protein
Length = 186
Score = 222 bits (566), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 104/173 (60%), Positives = 130/173 (75%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
K V+VGDGA GKTCLLI ++ + FP Y+PTVF+NY A++ VD K V L LWDTAGQEDY
Sbjct: 7 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDY 66
Query: 67 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPN 126
DRLRPLSYP TDV L+CFS+ SP S EN+ KW PEV+H CPN PIILVG K DLR+D +
Sbjct: 67 DRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKD 126
Query: 127 TIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAAL 179
TI++L + K P+ +G AMA++I A YLECSA ++ G++ VF+ A RA L
Sbjct: 127 TIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 179
>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
pdb|1HE1|D Chain D, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
Length = 176
Score = 222 bits (565), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 103/171 (60%), Positives = 129/171 (75%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
K V+VGDGA GKTCLLI ++ + FP Y+PTVF+NY A++ VD K V L LWDTAGQEDY
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDY 64
Query: 67 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPN 126
DRLRPLSYP TDV L+CFS+ SP S EN+ KW PEV+H CPN PIILVG K DLR+D +
Sbjct: 65 DRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKD 124
Query: 127 TIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRA 177
TI++L + K P+ +G AMA++I A YLECSA ++ G++ VF+ A RA
Sbjct: 125 TIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRA 175
>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBD|B Chain B, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBE|A Chain A, Crystal Structure Of Rac1 P29s Mutant
Length = 187
Score = 221 bits (564), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 103/173 (59%), Positives = 129/173 (74%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
K V+VGDGA GKTCLLI ++ + F Y+PTVF+NY A++ VD K V L LWDTAGQEDY
Sbjct: 15 KCVVVGDGAVGKTCLLISYTTNAFSGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDY 74
Query: 67 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPN 126
DRLRPLSYP TDV L+CFS+ SP S EN+ KW PEV+H CPN PIILVG K DLR+D +
Sbjct: 75 DRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKD 134
Query: 127 TIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAAL 179
TI++L + K P+ +G AMA++I A YLECSA ++ G++ VF+ A RA L
Sbjct: 135 TIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 187
>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant
pdb|4GZL|B Chain B, Crystal Structure Of Rac1 Q61l Mutant
Length = 204
Score = 221 bits (564), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 103/173 (59%), Positives = 129/173 (74%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
K V+VGDGA GKTCLLI ++ + FP Y+PTVF+NY A++ VD K V L LWDTAG EDY
Sbjct: 32 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDY 91
Query: 67 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPN 126
DRLRPLSYP TDV L+CFS+ SP S EN+ KW PEV+H CPN PIILVG K DLR+D +
Sbjct: 92 DRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKD 151
Query: 127 TIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAAL 179
TI++L + K P+ +G AMA++I A YLECSA ++ G++ VF+ A RA L
Sbjct: 152 TIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 204
>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1
Length = 180
Score = 221 bits (563), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 106/179 (59%), Positives = 132/179 (73%), Gaps = 2/179 (1%)
Query: 1 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDT 60
M AI K V+VGDGA GKTCLLI ++ + FP Y+PTVF+NY A++ VD K V L LWDT
Sbjct: 4 MQAI--KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDT 61
Query: 61 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 120
AG EDYDRLRPLSYP TDV L+CFS+ SP S EN+ KW PEV+H CPN PIILVG K D
Sbjct: 62 AGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLD 121
Query: 121 LRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAAL 179
LR+D +TI++L + K P+ +G AMA++I A YLECSA ++ G++ VF+ A RA L
Sbjct: 122 LRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 180
>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p.
pdb|2IC5|B Chain B, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p
Length = 180
Score = 220 bits (560), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 104/179 (58%), Positives = 131/179 (73%), Gaps = 2/179 (1%)
Query: 1 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDT 60
M AI K V+VGDGA GKTCLLI ++ + FP Y+PTVF+NY A++ VD K V L LWDT
Sbjct: 2 MQAI--KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDT 59
Query: 61 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 120
AGQEDYDRLRPLSYP TDV L+CFS+ SP S EN+ KW PEV+H CP+ PI+LVG K D
Sbjct: 60 AGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTKLD 119
Query: 121 LRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAAL 179
LR+D +TI+ L K P+ +G AMA++I + YLECSA ++ G++ VF+ A RA L
Sbjct: 120 LRDDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAVL 178
>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp
pdb|2C2H|B Chain B, Crystal Structure Of The Human Rac3 In Complex With Gdp
Length = 192
Score = 220 bits (560), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 104/179 (58%), Positives = 131/179 (73%), Gaps = 2/179 (1%)
Query: 1 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDT 60
M AI K V+VGDGA GKTCLLI ++ + FP Y+PTVF+NY A++ VD K V L LWDT
Sbjct: 1 MQAI--KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDT 58
Query: 61 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 120
AGQEDYDRLRPLSYP TDV L+CFS+ SP S EN+ KW PEV+H CP+ PI+LVG K D
Sbjct: 59 AGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTKLD 118
Query: 121 LRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAAL 179
LR+D +TI+ L K P+ +G AMA++I + YLECSA ++ G++ VF+ A RA L
Sbjct: 119 LRDDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAVL 177
>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2G0N|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2OV2|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|F Chain F, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|C Chain C, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|G Chain G, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|D Chain D, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|E Chain E, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|H Chain H, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2QME|A Chain A, Crystal Structure Of Human Rac3 In Complex With Crib
Domain Of Human P21-Activated Kinase 1 (Pak1)
Length = 179
Score = 220 bits (560), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 104/179 (58%), Positives = 131/179 (73%), Gaps = 2/179 (1%)
Query: 1 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDT 60
M AI K V+VGDGA GKTCLLI ++ + FP Y+PTVF+NY A++ VD K V L LWDT
Sbjct: 2 MQAI--KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDT 59
Query: 61 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 120
AGQEDYDRLRPLSYP TDV L+CFS+ SP S EN+ KW PEV+H CP+ PI+LVG K D
Sbjct: 60 AGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTKLD 119
Query: 121 LRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAAL 179
LR+D +TI+ L K P+ +G AMA++I + YLECSA ++ G++ VF+ A RA L
Sbjct: 120 LRDDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAVL 178
>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450m Mutant
Length = 332
Score = 218 bits (556), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 101/173 (58%), Positives = 128/173 (73%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
K V+VGDGA GKTCLLI ++ + FP Y+PTVF+NY A++ VD K V L LWDTAG EDY
Sbjct: 157 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDY 216
Query: 67 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPN 126
DRLRPLSYP TDV L+CFS+ SP S ++ KW PEV+H CPN PIILVG K DLR+D +
Sbjct: 217 DRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKD 276
Query: 127 TIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAAL 179
TI++L + K P+ +G AMA++I A YLECSA ++ G++ VF+ A RA L
Sbjct: 277 TIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 329
>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The
Crib Domain Of Human P21-Activated Kinase 6 (Pak6)
Length = 192
Score = 218 bits (556), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 101/187 (54%), Positives = 135/187 (72%), Gaps = 1/187 (0%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
K V+VGDGA GKTCLLI ++ ++FP YVPTVF+NY + + + L L+DTAGQEDY
Sbjct: 6 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 65
Query: 67 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPN 126
DRLRPLSYP TDV L+CFS+ SP S EN+ EKW PE+ H CP P +LVG + DLR+DP+
Sbjct: 66 DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPS 125
Query: 127 TIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVKKKKK 186
TI++L K KQ+P+ PE +A+ + A Y+ECSA +++G++ VF+ A AAL+ + KK
Sbjct: 126 TIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEPKK 185
Query: 187 G-RCRLL 192
RC LL
Sbjct: 186 SRRCVLL 192
>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450a Mutant
Length = 332
Score = 218 bits (556), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 101/173 (58%), Positives = 128/173 (73%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
K V+VGDGA GKTCLLI ++ + FP Y+PTVF+NY A++ VD K V L LWDTAG EDY
Sbjct: 157 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDY 216
Query: 67 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPN 126
DRLRPLSYP TDV L+CFS+ SP S ++ KW PEV+H CPN PIILVG K DLR+D +
Sbjct: 217 DRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKD 276
Query: 127 TIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAAL 179
TI++L + K P+ +G AMA++I A YLECSA ++ G++ VF+ A RA L
Sbjct: 277 TIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 329
>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex
pdb|2DFK|D Chain D, Crystal Structure Of The Cdc42-Collybistin Ii Complex
Length = 194
Score = 218 bits (556), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 101/187 (54%), Positives = 135/187 (72%), Gaps = 1/187 (0%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
K V+VGDGA GKTCLLI ++ ++FP YVPTVF+NY + + + L L+DTAGQEDY
Sbjct: 8 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 67
Query: 67 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPN 126
DRLRPLSYP TDV L+CFS+ SP S EN+ EKW PE+ H CP P +LVG + DLR+DP+
Sbjct: 68 DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPS 127
Query: 127 TIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVKKKKK 186
TI++L K KQ+P+ PE +A+ + A Y+ECSA +++G++ VF+ A AAL+ + KK
Sbjct: 128 TIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEPKK 187
Query: 187 G-RCRLL 192
RC LL
Sbjct: 188 SRRCVLL 194
>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.
pdb|2NGR|A Chain A, Transition State Complex For Gtp Hydrolysis By Cdc42:
Comparisons Of The High Resolution Structures For Cdc42
Bound To The Active And Catalytically Compromised Forms
Of The Cdc42-gap.
pdb|4ITR|C Chain C, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
pdb|4ITR|D Chain D, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
Length = 191
Score = 218 bits (556), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 101/187 (54%), Positives = 135/187 (72%), Gaps = 1/187 (0%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
K V+VGDGA GKTCLLI ++ ++FP YVPTVF+NY + + + L L+DTAGQEDY
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 64
Query: 67 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPN 126
DRLRPLSYP TDV L+CFS+ SP S EN+ EKW PE+ H CP P +LVG + DLR+DP+
Sbjct: 65 DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPS 124
Query: 127 TIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVKKKKK 186
TI++L K KQ+P+ PE +A+ + A Y+ECSA +++G++ VF+ A AAL+ + KK
Sbjct: 125 TIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEPKK 184
Query: 187 G-RCRLL 192
RC LL
Sbjct: 185 SRRCVLL 191
>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2
Wildtype
Length = 332
Score = 218 bits (555), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 101/173 (58%), Positives = 128/173 (73%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
K V+VGDGA GKTCLLI ++ + FP Y+PTVF+NY A++ VD K V L LWDTAG EDY
Sbjct: 157 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDY 216
Query: 67 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPN 126
DRLRPLSYP TDV L+CFS+ SP S ++ KW PEV+H CPN PIILVG K DLR+D +
Sbjct: 217 DRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKD 276
Query: 127 TIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAAL 179
TI++L + K P+ +G AMA++I A YLECSA ++ G++ VF+ A RA L
Sbjct: 277 TIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 329
>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures
Length = 194
Score = 217 bits (553), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 98/182 (53%), Positives = 132/182 (72%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
K V+VGDGA GKTCLLI ++ ++FP YVPTVF+NY + + + L L+DTAGQEDY
Sbjct: 12 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 71
Query: 67 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPN 126
DRLRPLSYP TDV L+CFS+ SP S EN+ EKW PE+ H CP P +LVG + DLR+DP+
Sbjct: 72 DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPS 131
Query: 127 TIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVKKKKK 186
TI++L K KQ+P+ PE +A+ + A Y+ECSA +++G++ VF+ A AAL+ + KK
Sbjct: 132 TIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEPKK 191
Query: 187 GR 188
R
Sbjct: 192 SR 193
>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|B Chain B, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|C Chain C, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|D Chain D, Rac2 (G12v) In Complex With Gtpgs
Length = 184
Score = 217 bits (553), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 104/179 (58%), Positives = 134/179 (74%), Gaps = 2/179 (1%)
Query: 1 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDT 60
M AI K V+VGD A GKTCLLI ++ + FP Y+PTVF+NY A++ VDSK V L LWDT
Sbjct: 8 MQAI--KCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDT 65
Query: 61 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 120
AGQEDYDRLRPLSYP TDV L+CFS+ SP S EN+ KW PEV+H CP+ PIILVG K D
Sbjct: 66 AGQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLD 125
Query: 121 LRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAAL 179
LR+D +TI++L + K P+ +G A+A++I++ YLECSA ++ G++ VF+ A RA L
Sbjct: 126 LRDDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVL 184
>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex
pdb|1AN0|B Chain B, Cdc42hs-Gdp Complex
Length = 190
Score = 217 bits (553), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 98/182 (53%), Positives = 132/182 (72%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
K V+VGDGA GKTCLLI ++ ++FP YVPTVF+NY + + + L L+DTAGQEDY
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVXIGGEPYTLGLFDTAGQEDY 64
Query: 67 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPN 126
DRLRPLSYP TDV L+CFS+ SP S EN+ EKW PE+ H CP P +LVG + DLR+DP+
Sbjct: 65 DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPS 124
Query: 127 TIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVKKKKK 186
TI++L K KQ+P+ PE +A+ + A Y+ECSA +++G++ VF+ A AAL+ + KK
Sbjct: 125 TIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEPKK 184
Query: 187 GR 188
R
Sbjct: 185 SR 186
>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZ7|D Chain D, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZG|B Chain B, Dbscdc42(Y889f)
pdb|1KZG|D Chain D, Dbscdc42(Y889f)
pdb|1KI1|A Chain A, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
pdb|1KI1|C Chain C, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
Length = 188
Score = 217 bits (553), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 98/182 (53%), Positives = 132/182 (72%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
K V+VGDGA GKTCLLI ++ ++FP YVPTVF+NY + + + L L+DTAGQEDY
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 64
Query: 67 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPN 126
DRLRPLSYP TDV L+CFS+ SP S EN+ EKW PE+ H CP P +LVG + DLR+DP+
Sbjct: 65 DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPS 124
Query: 127 TIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVKKKKK 186
TI++L K KQ+P+ PE +A+ + A Y+ECSA +++G++ VF+ A AAL+ + KK
Sbjct: 125 TIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEPKK 184
Query: 187 GR 188
R
Sbjct: 185 SR 186
>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In
Complex With The Multifunctional Regulator Rhogdi
Length = 191
Score = 217 bits (553), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 98/182 (53%), Positives = 132/182 (72%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
K V+VGDGA GKTCLLI ++ ++FP YVPTVF+NY + + + L L+DTAGQEDY
Sbjct: 8 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 67
Query: 67 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPN 126
DRLRPLSYP TDV L+CFS+ SP S EN+ EKW PE+ H CP P +LVG + DLR+DP+
Sbjct: 68 DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPS 127
Query: 127 TIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVKKKKK 186
TI++L K KQ+P+ PE +A+ + A Y+ECSA +++G++ VF+ A AAL+ + KK
Sbjct: 128 TIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEPKK 187
Query: 187 GR 188
R
Sbjct: 188 SR 189
>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42.
pdb|2WMN|B Chain B, Structure Of The Complex Between Dock9 And Cdc42-Gdp.
pdb|2WMO|B Chain B, Structure Of The Complex Between Dock9 And Cdc42
Length = 190
Score = 217 bits (553), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 98/182 (53%), Positives = 132/182 (72%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
K V+VGDGA GKTCLLI ++ ++FP YVPTVF+NY + + + L L+DTAGQEDY
Sbjct: 7 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 66
Query: 67 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPN 126
DRLRPLSYP TDV L+CFS+ SP S EN+ EKW PE+ H CP P +LVG + DLR+DP+
Sbjct: 67 DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPS 126
Query: 127 TIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVKKKKK 186
TI++L K KQ+P+ PE +A+ + A Y+ECSA +++G++ VF+ A AAL+ + KK
Sbjct: 127 TIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEPKK 186
Query: 187 GR 188
R
Sbjct: 187 SR 188
>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
pdb|2QRZ|B Chain B, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
Length = 189
Score = 217 bits (552), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 98/182 (53%), Positives = 132/182 (72%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
K V+VGDGA GKTCLLI ++ ++FP YVPTVF+NY + + + L L+DTAGQEDY
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 64
Query: 67 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPN 126
DRLRPLSYP TDV L+CFS+ SP S EN+ EKW PE+ H CP P +LVG + DLR+DP+
Sbjct: 65 DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPS 124
Query: 127 TIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVKKKKK 186
TI++L K KQ+P+ PE +A+ + A Y+ECSA +++G++ VF+ A AAL+ + KK
Sbjct: 125 TIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEPKK 184
Query: 187 GR 188
R
Sbjct: 185 SR 186
>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp
pdb|2W2X|A Chain A, Complex Of Rac2 And Plcg2 Spph Domain
pdb|2W2X|B Chain B, Complex Of Rac2 And Plcg2 Spph Domain
Length = 185
Score = 216 bits (551), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 101/173 (58%), Positives = 131/173 (75%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
K V+VGD A GKTCLLI ++ + FP Y+PTVF+NY A++ VDSK V L LWDTAGQEDY
Sbjct: 11 KCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQEDY 70
Query: 67 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPN 126
DRLRPLSYP TDV L+CFS+ SP S EN+ KW PEV+H CP+ PIILVG K DLR+D +
Sbjct: 71 DRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLRDDKD 130
Query: 127 TIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAAL 179
TI++L + K P+ +G A+A++I++ YLECSA ++ G++ VF+ A RA L
Sbjct: 131 TIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVL 183
>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
pdb|1NF3|B Chain B, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
Length = 195
Score = 215 bits (548), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 100/187 (53%), Positives = 134/187 (71%), Gaps = 1/187 (0%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
K V+VGDGA GKTCLLI ++ ++FP YVPTVF+NY + + + L L+DTAG EDY
Sbjct: 9 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGLEDY 68
Query: 67 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPN 126
DRLRPLSYP TDV L+CFS+ SP S EN+ EKW PE+ H CP P +LVG + DLR+DP+
Sbjct: 69 DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPS 128
Query: 127 TIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVKKKKK 186
TI++L K KQ+P+ PE +A+ + A Y+ECSA +++G++ VF+ A AAL+ + KK
Sbjct: 129 TIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEPKK 188
Query: 187 G-RCRLL 192
RC LL
Sbjct: 189 SRRCVLL 195
>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex
With Cdc42 (T17n Mutant)
Length = 195
Score = 215 bits (548), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 97/182 (53%), Positives = 131/182 (71%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
K V+VGDGA GK CLLI ++ ++FP YVPTVF+NY + + + L L+DTAGQEDY
Sbjct: 12 KCVVVGDGAVGKNCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 71
Query: 67 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPN 126
DRLRPLSYP TDV L+CFS+ SP S EN+ EKW PE+ H CP P +LVG + DLR+DP+
Sbjct: 72 DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPS 131
Query: 127 TIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVKKKKK 186
TI++L K KQ+P+ PE +A+ + A Y+ECSA +++G++ VF+ A AAL+ + KK
Sbjct: 132 TIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEPKK 191
Query: 187 GR 188
R
Sbjct: 192 SR 193
>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
pdb|1A4R|A Chain A, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
Length = 191
Score = 214 bits (546), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 100/187 (53%), Positives = 134/187 (71%), Gaps = 1/187 (0%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
K V+VGD A GKTCLLI ++ ++FP YVPTVF+NY + + + L L+DTAGQEDY
Sbjct: 5 KCVVVGDVAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 64
Query: 67 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPN 126
DRLRPLSYP TDV L+CFS+ SP S EN+ EKW PE+ H CP P +LVG + DLR+DP+
Sbjct: 65 DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPS 124
Query: 127 TIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVKKKKK 186
TI++L K KQ+P+ PE +A+ + A Y+ECSA +++G++ VF+ A AAL+ + KK
Sbjct: 125 TIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEPKK 184
Query: 187 G-RCRLL 192
RC LL
Sbjct: 185 SRRCVLL 191
>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
pdb|1GZS|C Chain C, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
Length = 180
Score = 214 bits (544), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 95/174 (54%), Positives = 128/174 (73%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
K V+VGDGA GKTCLLI ++ ++FP YVPTVF+NY + + + L L+DTAGQEDY
Sbjct: 7 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 66
Query: 67 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPN 126
DRLRPLSYP TDV L+CFS+ SP S EN+ EKW PE+ H CP P +LVG + DLR+DP+
Sbjct: 67 DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPS 126
Query: 127 TIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
TI++L K KQ+P+ PE +A+ + A Y+ECSA +++G++ VF+ A AAL+
Sbjct: 127 TIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALE 180
>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide
Derived From P-21 Activated Kinase, Nmr, 20 Structures
Length = 178
Score = 214 bits (544), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 95/174 (54%), Positives = 128/174 (73%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
K V+VGDGA GKTCLLI ++ ++FP YVPTVF+NY + + + L L+DTAGQEDY
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 64
Query: 67 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPN 126
DRLRPLSYP TDV L+CFS+ SP S EN+ EKW PE+ H CP P +LVG + DLR+DP+
Sbjct: 65 DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPS 124
Query: 127 TIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
TI++L K KQ+P+ PE +A+ + A Y+ECSA +++G++ VF+ A AAL+
Sbjct: 125 TIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALE 178
>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex
Length = 182
Score = 214 bits (544), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 95/174 (54%), Positives = 128/174 (73%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
K V+VGDGA GKTCLLI ++ ++FP YVPTVF+NY + + + L L+DTAGQEDY
Sbjct: 9 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 68
Query: 67 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPN 126
DRLRPLSYP TDV L+CFS+ SP S EN+ EKW PE+ H CP P +LVG + DLR+DP+
Sbjct: 69 DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPS 128
Query: 127 TIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
TI++L K KQ+P+ PE +A+ + A Y+ECSA +++G++ VF+ A AAL+
Sbjct: 129 TIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALE 182
>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase
Binding Domain Of Wasp
Length = 179
Score = 214 bits (544), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 95/174 (54%), Positives = 128/174 (73%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
K V+VGDGA GKTCLLI ++ ++FP YVPTVF+NY + + + L L+DTAGQEDY
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 64
Query: 67 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPN 126
DRLRPLSYP TDV L+CFS+ SP S EN+ EKW PE+ H CP P +LVG + DLR+DP+
Sbjct: 65 DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPS 124
Query: 127 TIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
TI++L K KQ+P+ PE +A+ + A Y+ECSA +++G++ VF+ A AAL+
Sbjct: 125 TIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALE 178
>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
pdb|3EG5|C Chain C, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
Length = 178
Score = 213 bits (543), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 95/174 (54%), Positives = 127/174 (72%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
K V+VGDGA GKTCLLI ++ ++FP YVPTVF+NY + + + L L+DTAGQEDY
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 64
Query: 67 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPN 126
DRLRPLSYP TDV L+CFS+ SP S EN+ EKW PE+ H CP P +LVG + DLR+DP+
Sbjct: 65 DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPS 124
Query: 127 TIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
TI++L K KQ+P+ PE +A+ + A Y+ECSA ++ G++ VF+ A AAL+
Sbjct: 125 TIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVFDEAILAALE 178
>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain
Sopb In Complex With Cdc42
Length = 193
Score = 213 bits (543), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 95/174 (54%), Positives = 128/174 (73%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
K V+VGDGA GKTCLLI ++ ++FP YVPTVF+NY + + + L L+DTAGQEDY
Sbjct: 15 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 74
Query: 67 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPN 126
DRLRPLSYP TDV L+CFS+ SP S EN+ EKW PE+ H CP P +LVG + DLR+DP+
Sbjct: 75 DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPS 134
Query: 127 TIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
TI++L K KQ+P+ PE +A+ + A Y+ECSA +++G++ VF+ A AAL+
Sbjct: 135 TIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALE 188
>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|E Chain E, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|F Chain F, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
Length = 177
Score = 213 bits (542), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 95/173 (54%), Positives = 126/173 (72%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
K V+VGDGA GKTCLLI ++ ++FP YVPTVF+NY + + + L L+DTAGQEDY
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 64
Query: 67 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPN 126
DRLRPLSYP TDV L+CFS+ SP S EN+ EKW PE+ H CP P +LVG + DLR+DP+
Sbjct: 65 DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPS 124
Query: 127 TIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAAL 179
TI++L K KQ+P+ PE +A+ + A Y+ECSA ++ G++ VF+ A AAL
Sbjct: 125 TIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVFDEAILAAL 177
>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex
pdb|2ATX|B Chain B, Crystal Structure Of The Tc10 Gppnhp Complex
Length = 194
Score = 212 bits (540), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 95/178 (53%), Positives = 132/178 (74%)
Query: 2 AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTA 61
A+ K V+VGDGA GKTCLL+ ++ D FPE YVPTVF++Y + V KQ L L+DTA
Sbjct: 15 GALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTA 74
Query: 62 GQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDL 121
GQEDYDRLRPLSYP TDV L+CFS+ +P S +N+ E+W PE+K + PNVP +L+G + DL
Sbjct: 75 GQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDL 134
Query: 122 RNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAAL 179
R+DP T+ LN MK++P+ E+G+ +A++I A Y+ECSA +++G++ VF+ A A L
Sbjct: 135 RDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAIL 192
>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYF|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
Length = 203
Score = 212 bits (540), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 107/198 (54%), Positives = 133/198 (67%), Gaps = 21/198 (10%)
Query: 1 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDT 60
M AI K V+VGDGA GKTCLLI ++ + FP Y+PTVF+NY A++ VD K V L LWDT
Sbjct: 3 MQAI--KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDT 60
Query: 61 AGQEDYDRLRPLSYPDT-------------------DVILMCFSIDSPDSLENIPEKWTP 101
AGQEDYDRLRPLSYP T DV L+CFS+ SP S EN+ KW P
Sbjct: 61 AGQEDYDRLRPLSYPQTVGETYGKDITSRGKDKPIADVFLICFSLVSPASFENVRAKWYP 120
Query: 102 EVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSA 161
EV+H CPN PIILVG K DLR+D +TI++L + K P+ +G AMA++I A YLECSA
Sbjct: 121 EVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 180
Query: 162 KSKEGVREVFETATRAAL 179
++ G++ VF+ A RA L
Sbjct: 181 LTQRGLKTVFDEAIRAVL 198
>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
pdb|3QBV|C Chain C, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
Length = 178
Score = 212 bits (540), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 95/174 (54%), Positives = 127/174 (72%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
K V+VGDGA GKTCLLI ++ ++FP YVPTVF+NY + + + L L DTAGQEDY
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLRDTAGQEDY 64
Query: 67 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPN 126
DRLRPLSYP TDV L+CFS+ SP S EN+ EKW PE+ H CP P +LVG + DLR+DP+
Sbjct: 65 DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPS 124
Query: 127 TIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
TI++L K KQ+P+ PE +A+ + A Y+ECSA +++G++ VF+ A AAL+
Sbjct: 125 TIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALE 178
>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex
pdb|1E0A|A Chain A, Cdc42 Complexed With The Gtpase Binding Domain Of P21
Activated Kinase
Length = 184
Score = 212 bits (539), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 96/180 (53%), Positives = 130/180 (72%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
K V+VGDGA GKTCLLI ++ ++FP YVPTVF+NY + + + L L+DTAG EDY
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGLEDY 64
Query: 67 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPN 126
DRLRPLSYP TDV L+CFS+ SP S EN+ EKW PE+ H CP P +LVG + DLR+DP+
Sbjct: 65 DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPS 124
Query: 127 TIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVKKKKK 186
TI++L K KQ+P+ PE +A+ + A Y+ECSA +++G++ VF+ A AAL+ + KK
Sbjct: 125 TIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEPKK 184
>pdb|2KB0|A Chain A, Cdc42(T35a)
Length = 178
Score = 212 bits (539), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 94/174 (54%), Positives = 127/174 (72%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
K V+VGDGA GKTCLLI ++ ++FP YVP VF+NY + + + L L+DTAGQEDY
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPAVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 64
Query: 67 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPN 126
DRLRPLSYP TDV L+CFS+ SP S EN+ EKW PE+ H CP P +LVG + DLR+DP+
Sbjct: 65 DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPS 124
Query: 127 TIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
TI++L K KQ+P+ PE +A+ + A Y+ECSA +++G++ VF+ A AAL+
Sbjct: 125 TIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALE 178
>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs
Length = 178
Score = 211 bits (538), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 94/174 (54%), Positives = 127/174 (72%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
K V+VGDGA GKTCLLI ++ ++ P YVPTVF+NY + + + L L+DTAGQEDY
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKLPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 64
Query: 67 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPN 126
DRLRPLSYP TDV L+CFS+ SP S EN+ EKW PE+ H CP P +LVG + DLR+DP+
Sbjct: 65 DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPS 124
Query: 127 TIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
TI++L K KQ+P+ PE +A+ + A Y+ECSA +++G++ VF+ A AAL+
Sbjct: 125 TIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALE 178
>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein
Rhod
Length = 214
Score = 208 bits (529), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 93/179 (51%), Positives = 122/179 (68%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
K+V+VGDG CGKT LL+VF+ FPE Y PTVFE Y+ +++V K V L +WDTAGQ+DY
Sbjct: 36 KVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDY 95
Query: 67 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPN 126
DRLRPL YPD V+L+CF + SP+S +NI +W PEV HFC VPII+VG K DLR D +
Sbjct: 96 DRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKS 155
Query: 127 TIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVKKKK 185
+ +L + EPV G+ MA+ + A AYLECSA+ + V VF+ A AL + +
Sbjct: 156 LVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAAEVALSSRGRN 214
>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
pdb|2V55|D Chain D, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
Length = 200
Score = 204 bits (520), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 91/177 (51%), Positives = 131/177 (74%), Gaps = 1/177 (0%)
Query: 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQ 63
++ K+V+VGD CGKT LL VF+KD FPE YVPTVFENY A E+D++++EL+LWDT+G
Sbjct: 22 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGS 81
Query: 64 EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN 123
YD +RPLSYPD+D +L+CF I P++L+++ +KW E++ FCPN ++LVG K DLR
Sbjct: 82 PYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRT 141
Query: 124 DPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSA-KSKEGVREVFETATRAAL 179
D +T+ EL+ +Q PV ++G MA++I A Y+ECSA +S+ VR++F AT A +
Sbjct: 142 DVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACV 198
>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS
Length = 184
Score = 204 bits (520), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 91/178 (51%), Positives = 131/178 (73%), Gaps = 1/178 (0%)
Query: 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQ 63
++ K+V+VGD CGKT LL VF+KD FPE YVPTVFENY A E+D++++EL+LWDT+G
Sbjct: 6 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGS 65
Query: 64 EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN 123
YD +RPLSYPD+D +L+CF I P++L+++ +KW E++ FCPN ++LVG K DLR
Sbjct: 66 PYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRT 125
Query: 124 DPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSA-KSKEGVREVFETATRAALQ 180
D +T+ EL+ +Q PV ++G MA++I A Y+ECSA +S+ VR++F AT A +
Sbjct: 126 DVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVN 183
>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
pdb|1GWN|C Chain C, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
Length = 205
Score = 204 bits (518), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 91/178 (51%), Positives = 131/178 (73%), Gaps = 1/178 (0%)
Query: 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQ 63
++ K+V+VGD CGKT LL VF+KD FPE YVPTVFENY A E+D++++EL+LWDT+G
Sbjct: 27 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGS 86
Query: 64 EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN 123
YD +RPLSYPD+D +L+CF I P++L+++ +KW E++ FCPN ++LVG K DLR
Sbjct: 87 PYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRT 146
Query: 124 DPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSA-KSKEGVREVFETATRAALQ 180
D +T+ EL+ +Q PV ++G MA++I A Y+ECSA +S+ VR++F AT A +
Sbjct: 147 DVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVN 204
>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex
pdb|2WBL|D Chain D, Three-Dimensional Structure Of A Binary Rop-Prone Complex
Length = 180
Score = 190 bits (483), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 89/174 (51%), Positives = 119/174 (68%), Gaps = 2/174 (1%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
K V VGDGA GKTC+LI ++ + FP YVPTVF+N+ A++ VD V L LWDTAGQEDY
Sbjct: 8 KCVTVGDGAVGKTCMLISYTGNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
Query: 67 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPN 126
+RLRPLSY DV L+ FS+ S S ENI +KW PE+KH+ P +PI+LVG K DLR+D
Sbjct: 68 NRLRPLSYRGADVFLLAFSLISKASYENIHKKWLPELKHYAPGIPIVLVGTKLDLRDDKQ 127
Query: 127 TIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
+K+ + +G + + I A YLECS+K+++ V+ VF+TA R AL+
Sbjct: 128 FLKD--HPGAASITTAQGEELRKMIGAVRYLECSSKTQQNVKAVFDTAIRVALR 179
>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|B Chain B, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|C Chain C, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|D Chain D, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
Length = 212
Score = 188 bits (477), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 85/180 (47%), Positives = 125/180 (69%), Gaps = 4/180 (2%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
K V VGDGA GKTC+LI ++ ++FP Y+PTVF+N+ A++ VD + V L LWDTAGQEDY
Sbjct: 11 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDY 70
Query: 67 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPN 126
RLRPLSY D+ ++ FS+ S S EN+ +KW PE++ F PNVPI+LVG K DLR+D
Sbjct: 71 SRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKG 130
Query: 127 TIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVKKKKK 186
+ + + + +G + ++I A AY+ECS+K+++ V+ VF+TA + LQ ++K+
Sbjct: 131 YLADHTNV----ITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRRKE 186
>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5
Length = 182
Score = 187 bits (475), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 92/181 (50%), Positives = 122/181 (67%), Gaps = 3/181 (1%)
Query: 1 MAAIR-KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWD 59
M+A R K V VGDGA GKTCLLI ++ + FP YVPTVF+N+ A++ V+ V L LWD
Sbjct: 3 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWD 62
Query: 60 TAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKK 119
TAGQEDY+RLRPLSY DV ++ FS+ S S EN+ +KW PE+KH+ P VPI+LVG K
Sbjct: 63 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKL 122
Query: 120 DLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAAL 179
DLR+D ++ P+ +G + + I A AY+ECS+KS+E V+ VF+ A R L
Sbjct: 123 DLRDDKQFF--IDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIRVVL 180
Query: 180 Q 180
Q
Sbjct: 181 Q 181
>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State
Length = 201
Score = 187 bits (474), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 82/180 (45%), Positives = 126/180 (70%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
K V+VGDGA GKT L++ ++ + +P Y+PT F+N+ A + VD + V L L DTAGQ+++
Sbjct: 22 KCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEF 81
Query: 67 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPN 126
D+LRPL Y +TD+ L+CFS+ SP S +N+ EKW PE++ CP PIILVG + DLR D
Sbjct: 82 DKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVK 141
Query: 127 TIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVKKKKK 186
+ EL+K K++PV E + +A++I A +Y+ECSA +++ ++EVF+ A A +Q ++
Sbjct: 142 VLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVFDAAIVAGIQYSDTQQ 201
>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8
pdb|2NTY|D Chain D, Rop4-Gdp-Prone8
Length = 180
Score = 182 bits (462), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 87/181 (48%), Positives = 121/181 (66%), Gaps = 3/181 (1%)
Query: 1 MAAIR-KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWD 59
M+A R K V VGDGA GKTC+LI ++ + FP YVPTVF+N+ A++ VD V L LWD
Sbjct: 1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWD 60
Query: 60 TAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKK 119
TAGQEDY+RLRPLSY DV ++ FS+ S S EN+ +KW PE++H+ P VPIILVG K
Sbjct: 61 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
Query: 120 DLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAAL 179
DLR+D ++ P+ +G + + I + Y+ECS+K+++ V+ VF+ A + L
Sbjct: 121 DLRDDKQFF--IDHPGAVPITTNQGEELKKLIGSPIYIECSSKTQQNVKAVFDAAIKVVL 178
Query: 180 Q 180
Q
Sbjct: 179 Q 179
>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
pdb|2CLS|B Chain B, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
Length = 198
Score = 177 bits (449), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 82/176 (46%), Positives = 122/176 (69%), Gaps = 1/176 (0%)
Query: 5 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQE 64
R KLV+VGD CGKT +L V +KD +PE YVPTVFENY A +E + ++VEL+LWDT+G
Sbjct: 11 RCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSP 70
Query: 65 DYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRND 124
YD +RPL Y D+D +L+CF I P+++++ +KW E+ +CP+ ++L+G K DLR D
Sbjct: 71 YYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTD 130
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSA-KSKEGVREVFETATRAAL 179
+T+ EL+ KQ P+ E+G A+A+++ A YLE SA S++ + +F TA+ L
Sbjct: 131 LSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCL 186
>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1
Length = 214
Score = 177 bits (449), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 82/176 (46%), Positives = 122/176 (69%), Gaps = 1/176 (0%)
Query: 5 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQE 64
R KLV+VGD CGKT +L V +KD +PE YVPTVFENY A +E + ++VEL+LWDT+G
Sbjct: 27 RCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSP 86
Query: 65 DYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRND 124
YD +RPL Y D+D +L+CF I P+++++ +KW E+ +CP+ ++L+G K DLR D
Sbjct: 87 YYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTD 146
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSA-KSKEGVREVFETATRAAL 179
+T+ EL+ KQ P+ E+G A+A+++ A YLE SA S++ + +F TA+ L
Sbjct: 147 LSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCL 202
>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
pdb|2REX|D Chain D, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
Length = 197
Score = 177 bits (449), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 82/176 (46%), Positives = 122/176 (69%), Gaps = 1/176 (0%)
Query: 5 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQE 64
R KLV+VGD CGKT +L V +KD +PE YVPTVFENY A +E + ++VEL+LWDT+G
Sbjct: 10 RCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSP 69
Query: 65 DYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRND 124
YD +RPL Y D+D +L+CF I P+++++ +KW E+ +CP+ ++L+G K DLR D
Sbjct: 70 YYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTD 129
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSA-KSKEGVREVFETATRAAL 179
+T+ EL+ KQ P+ E+G A+A+++ A YLE SA S++ + +F TA+ L
Sbjct: 130 LSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCL 185
>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To
Ehrho1-Gtpgammas
Length = 188
Score = 172 bits (436), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 81/166 (48%), Positives = 112/166 (67%), Gaps = 10/166 (6%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
K+V+VGDGA GKTCLL+ FSK + P YVPTVFEN+ ++ +++ L LWDTAGQE+Y
Sbjct: 24 KIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEY 83
Query: 67 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPN 126
DRLRPLSY D+DV+L+CF++++ S +NI KW PE+KH+ +LVG K DLR D +
Sbjct: 84 DRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGS 143
Query: 127 TIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFE 172
+ V +EG + QK+ AY+E S+ +K G+ EVFE
Sbjct: 144 ----------DDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFE 179
>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REF|A Chain A, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REG|A Chain A, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
pdb|3REG|B Chain B, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
Length = 194
Score = 171 bits (434), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 81/166 (48%), Positives = 112/166 (67%), Gaps = 10/166 (6%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
K+V+VGDGA GKTCLL+ FSK + P YVPTVFEN+ ++ +++ L LWDTAGQE+Y
Sbjct: 25 KIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEY 84
Query: 67 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPN 126
DRLRPLSY D+DV+L+CF++++ S +NI KW PE+KH+ +LVG K DLR D +
Sbjct: 85 DRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGS 144
Query: 127 TIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFE 172
+ V +EG + QK+ AY+E S+ +K G+ EVFE
Sbjct: 145 ----------DDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFE 180
>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase
Rab1a
Length = 175
Score = 96.3 bits (238), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 97/180 (53%), Gaps = 19/180 (10%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQED 65
KL+++GD GK+CLL+ F+ D + + Y+ T+ ++ + I +++K V+L +WDTAGQE
Sbjct: 11 KLLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKLQIWDTAGQER 70
Query: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRND 124
+ + Y I++ + + DS +N+ + W E+ + NV +LVGNK DL
Sbjct: 71 FRTITSSYYRGAHGIIIVYDVTDRDSFDNVKQ-WIQEIDRYAMENVNKLLVGNKCDL--- 126
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVKKK 184
+ + V +EGR +A + ++E SAK+ V + F T A ++KK+
Sbjct: 127 ---------VSKRVVTSDEGRELADS-HGIKFIETSAKNAYNVEQAFHT---MAGEIKKR 173
>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
pdb|3TW8|D Chain D, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
Length = 181
Score = 94.7 bits (234), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 95/178 (53%), Gaps = 15/178 (8%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQED 65
KL+I+GD GK+ LL+ F+ + F Y+ T+ ++ + +E++ ++V+L +WDTAGQE
Sbjct: 11 KLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQER 70
Query: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDP 125
+ + Y T +++ + + S +S N+ ++W E+ C +V ILVGNK D DP
Sbjct: 71 FRTITSTYYRGTHGVIVVYDVTSAESFVNV-KRWLHEINQNCDDVCRILVGNKND---DP 126
Query: 126 NTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVKK 183
+++ V+ E+ A ++ E SAK V E+F T L+ KK
Sbjct: 127 ---------ERKVVETEDAYKFAGQM-GIQLFETSAKENVNVEEMFNCITELVLRAKK 174
>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A
pdb|2EFC|D Chain D, Ara7-GdpATVPS9A
pdb|2EFD|B Chain B, Ara7ATVPS9A
pdb|2EFD|D Chain D, Ara7ATVPS9A
pdb|2EFE|B Chain B, Ara7-Gdpnh2ATVPS9A
pdb|2EFE|D Chain D, Ara7-Gdpnh2ATVPS9A
pdb|2EFH|B Chain B, Ara7-GdpATVPS9A(D185N)
pdb|2EFH|D Chain D, Ara7-GdpATVPS9A(D185N)
pdb|4G01|B Chain B, Ara7-gdp-ca2+/vps9a
Length = 181
Score = 93.6 bits (231), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 87/171 (50%), Gaps = 16/171 (9%)
Query: 3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVAD-IEVDSKQVELALWDTA 61
+I KLV++GD GK+ L++ F KDQF E T+ + + + V+ V+ +WDTA
Sbjct: 10 SINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTA 69
Query: 62 GQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKD 120
GQE Y L P+ Y ++ F + + S E +KW E++ PN+ + L GNK D
Sbjct: 70 GQERYHSLAPMYYRGAAAAIIVFDVTNQASFER-AKKWVQELQAQGNPNMVMALAGNKSD 128
Query: 121 LRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVF 171
L + V E+ + AQ+ N ++E SAK+ V+E+F
Sbjct: 129 L------------LDARKVTAEDAQTYAQE-NGLFFMETSAKTATNVKEIF 166
>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|B Chain B, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|C Chain C, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|D Chain D, Gdp-Bound Rab2a Gtpase
Length = 174
Score = 93.6 bits (231), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 85/166 (51%), Gaps = 14/166 (8%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVAD-IEVDSKQVELALWDTAGQED 65
K +I+GD GK+CLL+ F+ +F V+ T+ + A I +D KQ++L +WDTAGQE
Sbjct: 12 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQES 71
Query: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDP 125
+ + Y L+ + I D+ ++ +H N+ I+L+GNK DL +
Sbjct: 72 FRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLES-- 129
Query: 126 NTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVF 171
+ VK EEG A A++ + ++E SAK+ V E F
Sbjct: 130 ----------RREVKKEEGEAFARE-HGLIFMETSAKTASNVEEAF 164
>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex
pdb|3CF6|R Chain R, Structure Of Epac2 In Complex With Cyclic-Amp And Rap
Length = 167
Score = 92.4 bits (228), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 58/172 (33%), Positives = 92/172 (53%), Gaps = 15/172 (8%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
KLV++G G GK+ L + F + F E Y PT+ ++Y +EVD++Q L + DTAG E +
Sbjct: 5 KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDAQQCMLEILDTAGTEQF 64
Query: 67 DRLRPLSYPDTDVILMCFSIDSPDSLENIPE--KWTPEVKHFCPNVPIILVGNKKDLRND 124
+R L + + +SI + + ++ + + VK +VP+ILVGNK DL +
Sbjct: 65 TAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKD-TDDVPMILVGNKCDLED- 122
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATR 176
+ V E+G+ +A++ N A+LE SAKSK V E+F R
Sbjct: 123 -----------ERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVR 163
>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef
Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA
pdb|3NKV|A Chain A, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|3NKV|B Chain B, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|4HLQ|B Chain B, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|D Chain D, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|F Chain F, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|H Chain H, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|J Chain J, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
Length = 175
Score = 91.7 bits (226), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 91/184 (49%), Gaps = 27/184 (14%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQED 65
KL+++GD GK+CLL+ F+ D + E Y+ T+ ++ + IE+D K ++L +WDTAGQE
Sbjct: 11 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 70
Query: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRN- 123
+ + Y I++ + + +S N+ + W E+ + NV +LVGNK DL
Sbjct: 71 FRTITSSYYRGAHGIIVVYDVTDQESYANVKQ-WLQEIDRYASENVNKLLVGNKSDLTTK 129
Query: 124 ---DPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
D T KE P +LE SAK+ V + F T A +
Sbjct: 130 KVVDNTTAKEFADSLGIP-----------------FLETSAKNATNVEQAFMT---MAAE 169
Query: 181 VKKK 184
+KK+
Sbjct: 170 IKKR 173
>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|C Chain C, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|E Chain E, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|G Chain G, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
Length = 181
Score = 91.3 bits (225), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 91/184 (49%), Gaps = 27/184 (14%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQED 65
KL+++GD GK+CLL+ F+ D + E Y+ T+ ++ + IE+D K ++L +WDTAGQE
Sbjct: 11 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 70
Query: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRN- 123
+ + Y I++ + + +S N+ + W E+ + NV +LVGNK DL
Sbjct: 71 FRTITSSYYRGAHGIIVVYDVTDQESYANVKQ-WLQEIDRYASENVNKLLVGNKSDLTTK 129
Query: 124 ---DPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
D T KE P +LE SAK+ V + F T A +
Sbjct: 130 KVVDNTTAKEFADSLGIP-----------------FLETSAKNATNVEQAFMT---MAAE 169
Query: 181 VKKK 184
+KK+
Sbjct: 170 IKKR 173
>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase
Length = 179
Score = 90.9 bits (224), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 86/179 (48%), Gaps = 20/179 (11%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYV-ADIEVDSKQVELALWDTAGQED 65
K++++GDG GK+ L+ + ++F T+ ++ D+EVD V + +WDTAGQE
Sbjct: 13 KIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQER 72
Query: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-----PNVPIILVGNKKD 120
+ LR Y +D L+ FS+D S +N+ W E ++ + P +++GNK D
Sbjct: 73 FRSLRTPFYRGSDCCLLTFSVDDSQSFQNLS-NWKKEFIYYADVKEPESFPFVILGNKTD 131
Query: 121 LRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAAL 179
+ K+ V EE +A + + Y E SAK V FE A R L
Sbjct: 132 I-------------KERQVSTEEAQAWCKDNGDYPYFETSAKDSTNVAAAFEEAVRRIL 177
>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi
Length = 213
Score = 90.5 bits (223), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 92/171 (53%), Gaps = 15/171 (8%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQED 65
K++++GD GK+CLL+ F +D+F ++ T+ ++ + ++++ K+V+L LWDTAGQE
Sbjct: 22 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQER 81
Query: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDP 125
+ + Y I++ + + + NI + + +H ++LVGNK D
Sbjct: 82 FRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD----- 136
Query: 126 NTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATR 176
M+ V ++G A+A+++ ++E SAK+ + V E+F T +
Sbjct: 137 --------METRVVTADQGEALAKEL-GIPFIESSAKNDDNVNEIFFTLAK 178
>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|B Chain B, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|C Chain C, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|D Chain D, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
Length = 170
Score = 90.5 bits (223), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 93/167 (55%), Gaps = 16/167 (9%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVAD-IEVDSKQVELALWDTAGQED 65
K+V++G+G GKT L++ + +++F + ++ T+ +++ + + K+V LA+WDTAGQE
Sbjct: 8 KVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQER 67
Query: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN-VPIILVGNKKDLRND 124
+ L P+ Y D++ ++ + I DS + + + W E++ N + + +VGNK DL
Sbjct: 68 FHALGPIYYRDSNGAILVYDITDEDSFQKV-KNWVKELRKMLGNEICLCIVGNKIDLE-- 124
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVF 171
K+ V +E + A+ + A Y SAK +G+ E+F
Sbjct: 125 ----------KERHVSIQEAESYAESVGAKHY-HTSAKQNKGIEELF 160
>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase
pdb|2F9M|A Chain A, 3d Structure Of Active Human Rab11b Gtpase
Length = 199
Score = 90.1 bits (222), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 87/168 (51%), Gaps = 16/168 (9%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDSKQVELALWDTAGQED 65
K+V++GD GK+ LL F++++F T+ E I+VD K ++ +WDTAGQE
Sbjct: 7 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQER 66
Query: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 124
Y R+ Y L+ + I + EN+ E+W E++ H N+ I+LVGNK DLR+
Sbjct: 67 YRRITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNKSDLRH- 124
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFE 172
V +E RA A+K N +++E SA V E F+
Sbjct: 125 -----------LRAVPTDEARAFAEK-NNLSFIETSALDSTNVEEAFK 160
>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A
Length = 164
Score = 90.1 bits (222), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 91/184 (49%), Gaps = 27/184 (14%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQED 65
KL+++GD GK+CLL+ F+ D + E Y+ T+ ++ + IE+D K ++L +WDTAGQE
Sbjct: 1 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 60
Query: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRN- 123
+ + Y I++ + + +S N+ + W E+ + NV +LVGNK DL
Sbjct: 61 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLQEIDRYASENVNKLLVGNKCDLTTK 119
Query: 124 ---DPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
D T KE P +LE SAK+ V + F T A +
Sbjct: 120 KVVDYTTAKEFADSLGIP-----------------FLETSAKNATNVEQSFMT---MAAE 159
Query: 181 VKKK 184
+KK+
Sbjct: 160 IKKR 163
>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1YZU|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1Z0I|A Chain A, Gdp-Bound Rab21 Gtpase
pdb|2OT3|B Chain B, Crystal Structure Of Rabex-5 Vps9 Domain In Complex With
Nucleotide Free Rab21
Length = 170
Score = 89.7 bits (221), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 93/167 (55%), Gaps = 16/167 (9%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVAD-IEVDSKQVELALWDTAGQED 65
K+V++G+G GKT L++ + +++F + ++ T+ +++ + + K+V LA+WDTAGQE
Sbjct: 8 KVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQER 67
Query: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN-VPIILVGNKKDLRND 124
+ L P+ Y D++ ++ + I DS + + + W E++ N + + +VGNK DL
Sbjct: 68 FHALGPIYYRDSNGAILVYDITDEDSFQKV-KNWVKELRKMLGNEICLCIVGNKIDLE-- 124
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVF 171
K+ V +E + A+ + A Y SAK +G+ E+F
Sbjct: 125 ----------KERHVSIQEAESYAESVGAKHY-HTSAKQNKGIEELF 160
>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
pdb|1YZT|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
Length = 184
Score = 89.7 bits (221), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 93/167 (55%), Gaps = 16/167 (9%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVAD-IEVDSKQVELALWDTAGQED 65
K+V++G+G GKT L++ + +++F + ++ T+ +++ + + K+V LA+WDTAGQE
Sbjct: 22 KVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQER 81
Query: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN-VPIILVGNKKDLRND 124
+ L P+ Y D++ ++ + I DS + + + W E++ N + + +VGNK DL
Sbjct: 82 FHALGPIYYRDSNGAILVYDITDEDSFQKV-KNWVKELRKMLGNEICLCIVGNKIDLE-- 138
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVF 171
K+ V +E + A+ + A Y SAK +G+ E+F
Sbjct: 139 ----------KERHVSIQEAESYAESVGAKHY-HTSAKQNKGIEELF 174
>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef
Domain, And Phosphate Complex
Length = 174
Score = 89.7 bits (221), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 92/171 (53%), Gaps = 15/171 (8%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQED 65
K++++GD GK+CLL+ F +D+F ++ T+ ++ + ++++ K+V+L LWDTAGQE
Sbjct: 9 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQER 68
Query: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDP 125
+ + Y I++ + + + NI + + +H ++LVGNK D
Sbjct: 69 FRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD----- 123
Query: 126 NTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATR 176
M+ V ++G A+A+++ ++E SAK+ + V E+F T +
Sbjct: 124 --------METRVVTADQGEALAKEL-GIPFIESSAKNDDNVNEIFFTLAK 165
>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b
Length = 191
Score = 89.7 bits (221), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 85/166 (51%), Gaps = 14/166 (8%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVAD-IEVDSKQVELALWDTAGQED 65
K +I+GD GK+CLL+ F+ +F V+ T+ + A + +D KQ++L +WDTAGQE
Sbjct: 23 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQES 82
Query: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDP 125
+ + Y L+ + I ++ ++ +H N+ I+L+GNK DL +
Sbjct: 83 FRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLES-- 140
Query: 126 NTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVF 171
+ VK EEG A A++ + ++E SAK+ V E F
Sbjct: 141 ----------RRDVKREEGEAFARE-HGLIFMETSAKTACNVEEAF 175
>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1
pdb|3L0I|D Chain D, Complex Structure Of Sidm/drra With The Wild Type Rab1
Length = 199
Score = 89.7 bits (221), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 92/184 (50%), Gaps = 27/184 (14%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQED 65
KL+++GD GK+CLL+ F+ D + E Y+ T+ ++ + IE+D K ++L +WDTAGQE
Sbjct: 35 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 94
Query: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRN- 123
+ + Y I++ + + +S N+ ++W E+ + NV +LVGNK DL
Sbjct: 95 FRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLTTK 153
Query: 124 ---DPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
D T KE P +LE SAK+ V + F T A +
Sbjct: 154 KVVDYTTAKEFADSLGIP-----------------FLETSAKNATNVEQSFXT---XAAE 193
Query: 181 VKKK 184
+KK+
Sbjct: 194 IKKR 197
>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With
The Coiled- Coil Domain Of Lida From Legionella
Pneumophila
Length = 196
Score = 89.7 bits (221), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 92/184 (50%), Gaps = 27/184 (14%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQED 65
KL+++GD GK+CLL+ F+ D + E Y+ T+ ++ + IE+D K ++L +WDTAGQE
Sbjct: 18 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 77
Query: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRN- 123
+ + Y I++ + + +S N+ ++W E+ + NV +LVGNK DL
Sbjct: 78 FRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLTTK 136
Query: 124 ---DPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
D T KE P +LE SAK+ V + F T A +
Sbjct: 137 KVVDYTTAKEFADSLGIP-----------------FLETSAKNATNVEQSFMT---MAAE 176
Query: 181 VKKK 184
+KK+
Sbjct: 177 IKKR 180
>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure
pdb|4FMB|D Chain D, Vira-Rab1 Complex Structure
pdb|4FMB|F Chain F, Vira-Rab1 Complex Structure
Length = 171
Score = 89.4 bits (220), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 91/184 (49%), Gaps = 27/184 (14%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQED 65
KL+++GD GK+CLL+ F+ D + E Y+ T+ ++ + IE+D K ++L +WDTAGQE
Sbjct: 8 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 67
Query: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRN- 123
+ + Y I++ + + +S N+ + W E+ + NV +LVGNK DL
Sbjct: 68 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLQEIDRYASENVNKLLVGNKCDLTTK 126
Query: 124 ---DPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
D T KE P +LE SAK+ V + F T A +
Sbjct: 127 KVVDYTTAKEFADSLGIP-----------------FLETSAKNATNVEQSFMT---MAAE 166
Query: 181 VKKK 184
+KK+
Sbjct: 167 IKKR 170
>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
pdb|1G17|B Chain B, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
Length = 170
Score = 89.4 bits (220), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 92/171 (53%), Gaps = 15/171 (8%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQED 65
K++++GD GK+CLL+ F +D+F ++ T+ ++ + ++++ K+V+L +WDTAGQE
Sbjct: 5 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQER 64
Query: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDP 125
+ + Y I++ + I + NI + + +H ++LVGNK D
Sbjct: 65 FRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD----- 119
Query: 126 NTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATR 176
M+ V ++G A+A+++ ++E SAK+ + V E+F T +
Sbjct: 120 --------METRVVTADQGEALAKEL-GIPFIESSAKNDDNVNEIFFTLAK 161
>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp
Length = 191
Score = 89.4 bits (220), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 92/184 (50%), Gaps = 27/184 (14%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQED 65
KL+++GD GK+CLL+ F+ D + E Y+ T+ ++ + IE+D K ++L +WDTAGQE
Sbjct: 27 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 86
Query: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRN- 123
+ + Y I++ + + +S N+ ++W E+ + NV +LVGNK DL
Sbjct: 87 FRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLTTK 145
Query: 124 ---DPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
D T KE P +LE SAK+ V + F T A +
Sbjct: 146 KVVDYTTAKEFADSLGIP-----------------FLETSAKNATNVEQSFMT---MAAE 185
Query: 181 VKKK 184
+KK+
Sbjct: 186 IKKR 189
>pdb|4FMC|B Chain B, Espg-Rab1 Complex
pdb|4FMC|D Chain D, Espg-Rab1 Complex
pdb|4FMD|B Chain B, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FMD|D Chain D, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FME|B Chain B, Espg-Rab1-Arf6 Complex
pdb|4FME|E Chain E, Espg-Rab1-Arf6 Complex
Length = 171
Score = 89.4 bits (220), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 91/184 (49%), Gaps = 27/184 (14%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQED 65
KL+++GD GK+CLL+ F+ D + E Y+ T+ ++ + IE+D K ++L +WDTAGQE
Sbjct: 8 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 67
Query: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRN- 123
+ + Y I++ + + +S N+ + W E+ + NV +LVGNK DL
Sbjct: 68 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLQEIDRYASENVNKLLVGNKCDLTTK 126
Query: 124 ---DPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
D T KE P +LE SAK+ V + F T A +
Sbjct: 127 KVVDYTTAKEFADSLGIP-----------------FLETSAKNATNVEQSFMT---MAAE 166
Query: 181 VKKK 184
+KK+
Sbjct: 167 IKKR 170
>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase
Length = 184
Score = 89.0 bits (219), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 56/169 (33%), Positives = 86/169 (50%), Gaps = 16/169 (9%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDSKQVELALWDTAGQED 65
K+V++GD GK+ LL F++++F T+ E I+VD K ++ +WDTAGQE
Sbjct: 22 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQER 81
Query: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 124
Y + Y L+ + I + EN+ E+W E++ H N+ I+LVGNK DLR+
Sbjct: 82 YRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNKSDLRH- 139
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFET 173
V +E RA A+K N +++E SA V F+T
Sbjct: 140 -----------LRAVPTDEARAFAEK-NGLSFIETSALDSTNVEAAFQT 176
>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp
Analogue
Length = 180
Score = 89.0 bits (219), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 88/184 (47%), Gaps = 20/184 (10%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDSKQVELALWDTAGQED 65
K++++GDG GK+ L+ + ++F T+ ++ D+EVD + V L +WDTAGQE
Sbjct: 9 KVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAGQER 68
Query: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-----PNVPIILVGNKKD 120
+ LR Y D L+ FS+D S EN+ W E ++ + P +++GNK D
Sbjct: 69 FKSLRTPFYRGADCCLLTFSVDDRQSFENLG-NWQKEFIYYADVKDPEHFPFVVLGNKVD 127
Query: 121 LRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
+ V EE + + + YLE SAK V FE A R L
Sbjct: 128 -------------KEDRQVTTEEAQTWCMENGDYPYLETSAKDDTNVTVAFEEAVRQVLA 174
Query: 181 VKKK 184
V+++
Sbjct: 175 VEEQ 178
>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
pdb|1OIV|B Chain B, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
Length = 191
Score = 89.0 bits (219), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/169 (33%), Positives = 86/169 (50%), Gaps = 16/169 (9%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDSKQVELALWDTAGQED 65
K+V++GD GK+ LL F++++F T+ E I+VD K ++ +WDTAGQE
Sbjct: 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQER 90
Query: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 124
Y + Y L+ + I + EN+ E+W E++ H N+ I+LVGNK DLR+
Sbjct: 91 YRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNKSDLRH- 148
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFET 173
V +E RA A+K N +++E SA V F+T
Sbjct: 149 -----------LRAVPTDEARAFAEK-NGLSFIETSALDSTNVEAAFQT 185
>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In
Complex With The Coiled-Coil Domain Of Lida From
Legionella Pneumophila
Length = 181
Score = 88.6 bits (218), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 91/184 (49%), Gaps = 27/184 (14%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQED 65
KL+++GD GK CLL+ F+ D + E Y+ T+ ++ + IE+D K ++L +WDTAGQE
Sbjct: 18 KLLLIGDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 77
Query: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRN- 123
+ + Y I++ + + +S N+ ++W E+ + NV +LVGNK DL
Sbjct: 78 FRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLTTK 136
Query: 124 ---DPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
D T KE P +LE SAK+ V + F T A +
Sbjct: 137 KVVDYTTAKEFADSLGIP-----------------FLETSAKNATNVEQSFMT---MAAE 176
Query: 181 VKKK 184
+KK+
Sbjct: 177 IKKR 180
>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1
Length = 169
Score = 88.6 bits (218), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/172 (33%), Positives = 91/172 (52%), Gaps = 15/172 (8%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
KLV++G GK+ L + F + F E Y PT+ ++Y +EVD++Q L + DTAG E +
Sbjct: 7 KLVVLGSVGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDAQQCMLEILDTAGTEQF 66
Query: 67 DRLRPLSYPDTDVILMCFSIDSPDSLENIPE--KWTPEVKHFCPNVPIILVGNKKDLRND 124
+R L + + +SI + + ++ + + VK +VP+ILVGNK DL +
Sbjct: 67 TAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKD-TDDVPMILVGNKCDLED- 124
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATR 176
+ V E+G+ +A++ N A+LE SAKSK V E+F R
Sbjct: 125 -----------ERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVR 165
>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
pdb|1S8F|B Chain B, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
Length = 177
Score = 88.2 bits (217), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 85/179 (47%), Gaps = 20/179 (11%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYV-ADIEVDSKQVELALWDTAGQED 65
K++++GDG GK+ L+ + ++F T+ ++ D+EVD V + +WDTAGQE
Sbjct: 11 KVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQER 70
Query: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-----PNVPIILVGNKKD 120
+ LR Y +D L+ FS+D S +N+ W E ++ + P +++GNK D
Sbjct: 71 FRSLRTPFYRGSDCCLLTFSVDDSQSFQNLS-NWKKEFIYYADVKEPESFPFVILGNKID 129
Query: 121 LRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAAL 179
+ + V EE +A + + Y E SAK V FE A R L
Sbjct: 130 I-------------SERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVL 175
>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4
pdb|2FU5|D Chain D, Structure Of Rab8 In Complex With Mss4
Length = 183
Score = 88.2 bits (217), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 92/172 (53%), Gaps = 16/172 (9%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQED 65
KL+++GD GKTC+L FS+D F ++ T+ ++ + IE+D K+++L +WDTAGQE
Sbjct: 10 KLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQER 69
Query: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRND 124
+ + Y I++ + I + S +NI W + +H +V +++GNK D+ ND
Sbjct: 70 FRTITTAYYRGAMGIMLVYDITNEKSFDNI-RNWIRNIEEHASADVEKMILGNKCDV-ND 127
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATR 176
++++K + E + + G ++E SAK+ V F T R
Sbjct: 128 K---RQVSKERGEKLALDYG---------IKFMETSAKANINVENAFFTLAR 167
>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
pdb|1WMS|B Chain B, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
Length = 177
Score = 88.2 bits (217), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 85/179 (47%), Gaps = 20/179 (11%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYV-ADIEVDSKQVELALWDTAGQED 65
K++++GDG GK+ L+ + ++F T+ ++ D+EVD V + +WDTAGQE
Sbjct: 9 KVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQER 68
Query: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-----PNVPIILVGNKKD 120
+ LR Y +D L+ FS+D S +N+ W E ++ + P +++GNK D
Sbjct: 69 FRSLRTPFYRGSDCCLLTFSVDDSQSFQNLS-NWKKEFIYYADVKEPESFPFVILGNKID 127
Query: 121 LRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAAL 179
+ + V EE +A + + Y E SAK V FE A R L
Sbjct: 128 I-------------SERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVL 173
>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|C Chain C, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|E Chain E, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|G Chain G, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3TNF|A Chain A, Lida From Legionella In Complex With Active Rab8a
Length = 174
Score = 88.2 bits (217), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 92/172 (53%), Gaps = 16/172 (9%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQED 65
KL+++GD GKTC+L FS+D F ++ T+ ++ + IE+D K+++L +WDTAGQE
Sbjct: 8 KLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQER 67
Query: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRND 124
+ + Y I++ + I + S +NI W + +H +V +++GNK D+ ND
Sbjct: 68 FRTITTAYYRGAMGIMLVYDITNEKSFDNI-RNWIRNIEEHASADVEKMILGNKCDV-ND 125
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATR 176
++++K + E + + G ++E SAK+ V F T R
Sbjct: 126 K---RQVSKERGEKLALDYG---------IKFMETSAKANINVENAFFTLAR 165
>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab
Gtpase Sec4p
Length = 170
Score = 87.8 bits (216), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 91/171 (53%), Gaps = 15/171 (8%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQED 65
K++++GD GK+CLL+ F +D+F ++ T+ ++ + ++++ K+V+L LWDTAGQE
Sbjct: 5 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQER 64
Query: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDP 125
+ + Y I++ + + + NI + + +H ++LVGNK D
Sbjct: 65 FRTITTAYYRGAXGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD----- 119
Query: 126 NTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATR 176
+ V ++G A+A+++ ++E SAK+ + V E+F T +
Sbjct: 120 --------XETRVVTADQGEALAKEL-GIPFIESSAKNDDNVNEIFFTLAK 161
>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp
pdb|1G16|B Chain B, Crystal Structure Of Sec4-Gdp
pdb|1G16|C Chain C, Crystal Structure Of Sec4-Gdp
pdb|1G16|D Chain D, Crystal Structure Of Sec4-Gdp
Length = 170
Score = 87.4 bits (215), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 91/171 (53%), Gaps = 15/171 (8%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQED 65
K++++GD GK+CLL+ F +D+F ++ T+ ++ + ++++ K+V+L +WDTAGQE
Sbjct: 5 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQER 64
Query: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDP 125
+ + Y I++ + I + NI + + +H ++LVGNK D
Sbjct: 65 FRTITTAYYRGAXGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD----- 119
Query: 126 NTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATR 176
+ V ++G A+A+++ ++E SAK+ + V E+F T +
Sbjct: 120 --------XETRVVTADQGEALAKEL-GIPFIESSAKNDDNVNEIFFTLAK 161
>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras-
Binding-Domain Of C-Raf1 Kinase (Rafrbd)
Length = 167
Score = 87.4 bits (215), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 57/172 (33%), Positives = 90/172 (52%), Gaps = 15/172 (8%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
KLV++G G GK+ L + F + F E Y PT+ ++Y +EVD +Q L + DTAG E +
Sbjct: 5 KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQF 64
Query: 67 DRLRPLSYPDTDVILMCFSIDSPDSLENIPE--KWTPEVKHFCPNVPIILVGNKKDLRND 124
+R L + + +SI + + ++ + + VK +VP+ILVGNK DL +
Sbjct: 65 TAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKD-TEDVPMILVGNKCDLED- 122
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATR 176
+ V E+G+ +A++ A+LE SAKSK V E+F R
Sbjct: 123 -----------ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVR 163
>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c
(Mouse)
Length = 164
Score = 87.4 bits (215), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 85/167 (50%), Gaps = 16/167 (9%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVAD-IEVDSKQVELALWDTAGQED 65
KLV++G+ A GK+ L++ F K QF E T+ ++ + +D V+ +WDTAGQE
Sbjct: 5 KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQER 64
Query: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRND 124
Y L P+ Y ++ + I + D+ + W E+ + PN+ I L GNK DL +
Sbjct: 65 YHSLAPMYYRGAQAAIVVYDITNTDTFAR-AKNWVKELQRQASPNIVIALAGNKADLAS- 122
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVF 171
+ V+ +E +A A N+ ++E SAK+ V E+F
Sbjct: 123 -----------KRAVEFQEAQAYADD-NSLLFMETSAKTAMNVNEIF 157
>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase
Length = 166
Score = 87.0 bits (214), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 85/167 (50%), Gaps = 16/167 (9%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVAD-IEVDSKQVELALWDTAGQED 65
KLV++G+ A GK+ L++ F K QF E T+ ++ + +D V+ +WDTAGQE
Sbjct: 7 KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIQAAFLTQTVCLDDTTVKFEIWDTAGQER 66
Query: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRND 124
Y L P+ Y ++ + I + D+ + W E+ + PN+ I L GNK DL +
Sbjct: 67 YHSLAPMYYRGAQAAIVVYDITNTDTFAR-AKNWVKELQRQASPNIVIALAGNKADLAS- 124
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVF 171
+ V+ +E +A A N+ ++E SAK+ V E+F
Sbjct: 125 -----------KRAVEFQEAQAYADD-NSLLFMETSAKTAMNVNEIF 159
>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp
Length = 191
Score = 86.7 bits (213), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 89/169 (52%), Gaps = 18/169 (10%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQED 65
KL+I+G+ + GKT L ++ D F +V TV ++ V + K+V+L +WDTAGQE
Sbjct: 25 KLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQER 84
Query: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRND 124
Y + Y ++ + I + +S N + W ++K + N +ILVGNK D
Sbjct: 85 YRTITTAYYRGAMGFILMYDITNEESF-NAVQDWATQIKTYSWDNAQVILVGNKCD---- 139
Query: 125 PNTIKELNKMKQEPVKP-EEGRAMAQKINAFAYLECSAKSKEGVREVFE 172
M++E V P E+G+ +A+++ F + E SAK VR+ FE
Sbjct: 140 ---------MEEERVVPTEKGQLLAEQL-GFDFFEASAKENISVRQAFE 178
>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|B Chain B, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|C Chain C, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|D Chain D, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|E Chain E, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
Length = 171
Score = 86.3 bits (212), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 84/167 (50%), Gaps = 16/167 (9%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVAD-IEVDSKQVELALWDTAGQED 65
KLV++G+ A GK+ L++ F K QF E T+ ++ + +D V+ +WDTAGQE
Sbjct: 9 KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQER 68
Query: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRND 124
Y L P+ Y ++ + I + +S + W E+ + PN+ I L GNK DL N
Sbjct: 69 YHSLAPMYYRGAQAAIVVYDITNEESFAR-AKNWVKELQRQASPNIVIALSGNKADLAN- 126
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVF 171
+ V +E ++ A N+ ++E SAK+ V E+F
Sbjct: 127 -----------KRAVDFQEAQSYADD-NSLLFMETSAKTSMNVNEIF 161
>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e)
Complexed With Gppnhp And The Ras-Binding-Domain Of
Human C-Raf1, Residues 51-131
pdb|3KUC|A Chain A, Complex Of Rap1a(E30dK31E)GDP WITH RAFRBD(A85KN71R)
Length = 167
Score = 86.3 bits (212), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 56/172 (32%), Positives = 90/172 (52%), Gaps = 15/172 (8%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
KLV++G G GK+ L + F + F + Y PT+ ++Y +EVD +Q L + DTAG E +
Sbjct: 5 KLVVLGSGGVGKSALTVQFVQGIFVDEYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQF 64
Query: 67 DRLRPLSYPDTDVILMCFSIDSPDSLENIPE--KWTPEVKHFCPNVPIILVGNKKDLRND 124
+R L + + +SI + + ++ + + VK +VP+ILVGNK DL +
Sbjct: 65 TAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKD-TEDVPMILVGNKCDLED- 122
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATR 176
+ V E+G+ +A++ A+LE SAKSK V E+F R
Sbjct: 123 -----------ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVR 163
>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a
pdb|1R2Q|A Chain A, Crystal Structure Of Human Rab5a Gtpase Domain At 1.05 A
Resolution
Length = 170
Score = 85.9 bits (211), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 84/167 (50%), Gaps = 16/167 (9%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVAD-IEVDSKQVELALWDTAGQED 65
KLV++G+ A GK+ L++ F K QF E T+ ++ + +D V+ +WDTAGQE
Sbjct: 8 KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQER 67
Query: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRND 124
Y L P+ Y ++ + I + +S + W E+ + PN+ I L GNK DL N
Sbjct: 68 YHSLAPMYYRGAQAAIVVYDITNEESFAR-AKNWVKELQRQASPNIVIALSGNKADLAN- 125
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVF 171
+ V +E ++ A N+ ++E SAK+ V E+F
Sbjct: 126 -----------KRAVDFQEAQSYADD-NSLLFMETSAKTSMNVNEIF 160
>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution
Length = 169
Score = 85.9 bits (211), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 86/168 (51%), Gaps = 16/168 (9%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQED 65
K++I+G+ + GKT L ++ D F +V TV ++ V I + K+++L +WDTAGQE
Sbjct: 7 KILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQER 66
Query: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRND 124
Y + Y ++ + I + +S N + W+ ++K + N ++LVGNK D+ +
Sbjct: 67 YRTITTAYYRGAMGFILMYDITNEESF-NAVQDWSTQIKTYSWDNAQVLLVGNKCDMED- 124
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFE 172
+ V E GR +A + F + E SAK V++ FE
Sbjct: 125 -----------ERVVSSERGRQLADHL-GFEFFEASAKDNINVKQTFE 160
>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|B Chain B, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|C Chain C, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
Length = 172
Score = 85.9 bits (211), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 85/169 (50%), Gaps = 16/169 (9%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDSKQVELALWDTAGQED 65
K+V++GD GK+ LL F++++F T+ E I+VD K ++ +WDTAG E
Sbjct: 10 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLER 69
Query: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 124
Y + Y L+ + I + EN+ E+W E++ H N+ I+LVGNK DLR+
Sbjct: 70 YRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNKSDLRH- 127
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFET 173
V +E RA A+K N +++E SA V F+T
Sbjct: 128 -----------LRAVPTDEARAFAEK-NGLSFIETSALDSTNVEAAFQT 164
>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex
With Gtpgammas
pdb|1OIX|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp And Pi
Length = 191
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 85/169 (50%), Gaps = 16/169 (9%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDSKQVELALWDTAGQED 65
K+V++GD GK+ LL F++++F T+ E I+VD K ++ +WDTAG E
Sbjct: 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLER 90
Query: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 124
Y + Y L+ + I + EN+ E+W E++ H N+ I+LVGNK DLR+
Sbjct: 91 YRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNKSDLRH- 148
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFET 173
V +E RA A+K N +++E SA V F+T
Sbjct: 149 -----------LRAVPTDEARAFAEK-NGLSFIETSALDSTNVEAAFQT 185
>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1
(Gtpase Domain) Complex
Length = 175
Score = 85.1 bits (209), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 91/184 (49%), Gaps = 27/184 (14%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQED 65
KL+++GD GK+CLL+ F+ D + E Y+ T+ ++ + IE+D K ++L +WDTAGQE
Sbjct: 10 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 69
Query: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRN- 123
+ + Y I++ + + +S N+ ++W E+ + NV +LVG K DL
Sbjct: 70 FRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGIKCDLTTK 128
Query: 124 ---DPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
D T KE P +LE SAK+ V + F T A +
Sbjct: 129 KVVDYTTAKEFADSLGIP-----------------FLETSAKNATNVEQSFMT---MAAE 168
Query: 181 VKKK 184
+KK+
Sbjct: 169 IKKR 172
>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
pdb|2D7C|B Chain B, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
Length = 167
Score = 84.7 bits (208), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 84/169 (49%), Gaps = 16/169 (9%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDSKQVELALWDTAGQED 65
K+V++GD GK+ LL F++++F T+ E I+VD K ++ +WDTAG E
Sbjct: 7 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLER 66
Query: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 124
Y + Y L+ + I + EN+ E+W E++ H N+ I LVGNK DLR+
Sbjct: 67 YRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIXLVGNKSDLRH- 124
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFET 173
V +E RA A+K N +++E SA V F+T
Sbjct: 125 -----------LRAVPTDEARAFAEK-NGLSFIETSALDSTNVEAAFQT 161
>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZD|B Chain B, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZH|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Family
Interacting Protein 2
Length = 173
Score = 84.7 bits (208), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 84/169 (49%), Gaps = 16/169 (9%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDSKQVELALWDTAGQED 65
K+V++GD GK+ LL F++++F T+ E I+VD K ++ +WDTAG E
Sbjct: 13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLER 72
Query: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 124
Y + Y L+ + I + EN+ E+W E++ H N+ I LVGNK DLR+
Sbjct: 73 YRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIXLVGNKSDLRH- 130
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFET 173
V +E RA A+K N +++E SA V F+T
Sbjct: 131 -----------LRAVPTDEARAFAEK-NGLSFIETSALDSTNVEAAFQT 167
>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp
Length = 189
Score = 84.7 bits (208), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 86/168 (51%), Gaps = 16/168 (9%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQED 65
KL+++G+ + GKT L ++ D F +V TV ++ V + K+++L +WDTAGQE
Sbjct: 24 KLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQER 83
Query: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRND 124
Y + Y L+ + I + +S + + W ++K + N +ILVGNK DL +
Sbjct: 84 YRTITTAYYRGAMGFLLMYDIANQESFAAVQD-WATQIKTYSWDNAQVILVGNKCDLED- 141
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFE 172
+ V E+GR +A + F + E SAK V++VFE
Sbjct: 142 -----------ERVVPAEDGRRLADDL-GFEFFEASAKENINVKQVFE 177
>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
pdb|2A9K|A Chain A, Crystal Structure Of The C3bot-Nad-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
Length = 187
Score = 84.7 bits (208), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 87/167 (52%), Gaps = 16/167 (9%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
K+++VG G GK+ L + F D+F E Y PT ++Y + +D ++V++ + DTAGQEDY
Sbjct: 20 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 79
Query: 67 DRLRPLSYPDTDVILMCFSIDSPDSLENIPE--KWTPEVKHFCPNVPIILVGNKKDLRND 124
+R + + L FSI +S + + VK NVP +LVGNK DL +
Sbjct: 80 AAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLVGNKSDLED- 137
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVF 171
+ V EE + A++ N Y+E SAK++ V +VF
Sbjct: 138 -----------KRQVSVEEAKNRAEQWNV-NYVETSAKTRANVDKVF 172
>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
pdb|1UAD|B Chain B, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
Length = 175
Score = 84.7 bits (208), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 87/167 (52%), Gaps = 16/167 (9%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
K+++VG G GK+ L + F D+F E Y PT ++Y + +D ++V++ + DTAGQEDY
Sbjct: 8 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 67
Query: 67 DRLRPLSYPDTDVILMCFSIDSPDSLENIPE--KWTPEVKHFCPNVPIILVGNKKDLRND 124
+R + + L FSI +S + + VK NVP +LVGNK DL +
Sbjct: 68 AAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLVGNKSDLED- 125
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVF 171
+ V EE + A++ N Y+E SAK++ V +VF
Sbjct: 126 -----------KRQVSVEEAKNRAEQWNV-NYVETSAKTRANVDKVF 160
>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex
Length = 178
Score = 84.7 bits (208), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 89/167 (53%), Gaps = 15/167 (8%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
K+++VG G GK+ L + F D+F E Y PT ++Y + +D ++V++ + DTAG EDY
Sbjct: 9 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGLEDY 68
Query: 67 DRLRPLSYPDTDVILMCFSIDSPDSLENIPE--KWTPEVKHFCPNVPIILVGNKKDLRND 124
+R + + L+ FSI +S E + VK +P+++VGNK D
Sbjct: 69 AAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSD---- 124
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVF 171
L + +Q PV EE R+ A++ Y+E SAK++ V +VF
Sbjct: 125 ------LEERRQVPV--EEARSKAEEWGV-QYVETSAKTRANVDKVF 162
>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium
Botulinum C3 Exoenzyme By Rala Gtpase
Length = 206
Score = 84.7 bits (208), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 87/167 (52%), Gaps = 16/167 (9%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
K+++VG G GK+ L + F D+F E Y PT ++Y + +D ++V++ + DTAGQEDY
Sbjct: 16 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 75
Query: 67 DRLRPLSYPDTDVILMCFSIDSPDSLENIPE--KWTPEVKHFCPNVPIILVGNKKDLRND 124
+R + + L FSI +S + + VK NVP +LVGNK DL +
Sbjct: 76 AAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLVGNKSDLED- 133
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVF 171
+ V EE + A++ N Y+E SAK++ V +VF
Sbjct: 134 -----------KRQVSVEEAKNRAEQWNV-NYVETSAKTRANVDKVF 168
>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb
In Its Active Conformation: Significance For Effector
Protein Binding
Length = 174
Score = 84.3 bits (207), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 89/167 (53%), Gaps = 15/167 (8%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
K+++VG G GK+ L + F D+F E Y PT ++Y + +D ++V++ + DTAG EDY
Sbjct: 5 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGLEDY 64
Query: 67 DRLRPLSYPDTDVILMCFSIDSPDSLENIPE--KWTPEVKHFCPNVPIILVGNKKDLRND 124
+R + + L+ FSI +S E + VK +P+++VGNK D
Sbjct: 65 AAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSD---- 120
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVF 171
L + +Q PV EE R+ A++ Y+E SAK++ V +VF
Sbjct: 121 ------LEERRQVPV--EEARSKAEEWGV-QYVETSAKTRANVDKVF 158
>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
pdb|2Y8E|B Chain B, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
Length = 179
Score = 84.3 bits (207), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 88/167 (52%), Gaps = 16/167 (9%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDSKQVELALWDTAGQED 65
KLV +G+ + GKT L+ F D F Y T+ ++++ + ++ + V L LWDTAGQE
Sbjct: 16 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 75
Query: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 124
+ L P D+ V ++ + I + +S KW +V+ +V I+LVGNK DL +
Sbjct: 76 FRSLIPSYIRDSTVAVVVYDITNTNSFHQ-TSKWIDDVRTERGSDVIIMLVGNKTDLSD- 133
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVF 171
+ V EEG A+++N ++E SAK+ V+++F
Sbjct: 134 -----------KRQVSTEEGERKAKELNVM-FIETSAKAGYNVKQLF 168
>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase
pdb|1Z0D|C Chain C, Gdp-bound Rab5c Gtpase
Length = 167
Score = 84.0 bits (206), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 84/167 (50%), Gaps = 16/167 (9%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVAD-IEVDSKQVELALWDTAGQED 65
KLV++G+ A GK+ L++ F K QF E T+ ++ + +D V+ +WDTAG E
Sbjct: 7 KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLER 66
Query: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRND 124
Y L P+ Y ++ + I + D+ + W E+ + PN+ I L GNK DL +
Sbjct: 67 YHSLAPMYYRGAQAAIVVYDITNTDTFAR-AKNWVKELQRQASPNIVIALAGNKADLAS- 124
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVF 171
+ V+ +E +A A N+ ++E SAK+ V E+F
Sbjct: 125 -----------KRAVEFQEAQAYADD-NSLLFMETSAKTAMNVNEIF 159
>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Y|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
Length = 168
Score = 84.0 bits (206), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 87/167 (52%), Gaps = 16/167 (9%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
K+++VG G GK+ L + F D+F E Y PT ++Y + +D ++V++ + DTAGQEDY
Sbjct: 6 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 65
Query: 67 DRLRPLSYPDTDVILMCFSIDSPDSLENIPE--KWTPEVKHFCPNVPIILVGNKKDLRND 124
+R + + L FSI +S + + VK NVP +LVGNK DL +
Sbjct: 66 AAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLVGNKSDLED- 123
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVF 171
+Q V+ + RA +N Y+E SAK++ V +VF
Sbjct: 124 ---------KRQVSVEEAKNRADQWNVN---YVETSAKTRANVDKVF 158
>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With
Gppnhp
Length = 170
Score = 83.6 bits (205), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 83/167 (49%), Gaps = 16/167 (9%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVAD-IEVDSKQVELALWDTAGQED 65
KLV++G+ GK+ L++ F K QF E T+ ++ + +D V+ +WDTAGQE
Sbjct: 8 KLVLLGESKVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQER 67
Query: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRND 124
Y L P+ Y ++ + I + +S + W E+ + PN+ I L GNK DL N
Sbjct: 68 YHSLAPMYYRGAQAAIVVYDITNEESFAR-AKNWVKELQRQASPNIVIALSGNKADLAN- 125
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVF 171
+ V +E ++ A N+ ++E SAK+ V E+F
Sbjct: 126 -----------KRAVDFQEAQSYADD-NSLLFMETSAKTSMNVNEIF 160
>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With
Gppnhp
Length = 170
Score = 83.6 bits (205), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 83/167 (49%), Gaps = 16/167 (9%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVAD-IEVDSKQVELALWDTAGQED 65
KLV++G+ GK+ L++ F K QF E T+ ++ + +D V+ +WDTAGQE
Sbjct: 8 KLVLLGESRVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQER 67
Query: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRND 124
Y L P+ Y ++ + I + +S + W E+ + PN+ I L GNK DL N
Sbjct: 68 YHSLAPMYYRGAQAAIVVYDITNEESFAR-AKNWVKELQRQASPNIVIALSGNKADLAN- 125
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVF 171
+ V +E ++ A N+ ++E SAK+ V E+F
Sbjct: 126 -----------KRAVDFQEAQSYADD-NSLLFMETSAKTSMNVNEIF 160
>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With
Gppnhp
Length = 170
Score = 83.6 bits (205), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 83/167 (49%), Gaps = 16/167 (9%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVAD-IEVDSKQVELALWDTAGQED 65
KLV++G+ GK+ L++ F K QF E T+ ++ + +D V+ +WDTAGQE
Sbjct: 8 KLVLLGESEVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQER 67
Query: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRND 124
Y L P+ Y ++ + I + +S + W E+ + PN+ I L GNK DL N
Sbjct: 68 YHSLAPMYYRGAQAAIVVYDITNEESFAR-AKNWVKELQRQASPNIVIALSGNKADLAN- 125
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVF 171
+ V +E ++ A N+ ++E SAK+ V E+F
Sbjct: 126 -----------KRAVDFQEAQSYADD-NSLLFMETSAKTSMNVNEIF 160
>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With
Gppnhp
Length = 170
Score = 83.6 bits (205), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 83/167 (49%), Gaps = 16/167 (9%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVAD-IEVDSKQVELALWDTAGQED 65
KLV++G+ GK+ L++ F K QF E T+ ++ + +D V+ +WDTAGQE
Sbjct: 8 KLVLLGESLVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQER 67
Query: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRND 124
Y L P+ Y ++ + I + +S + W E+ + PN+ I L GNK DL N
Sbjct: 68 YHSLAPMYYRGAQAAIVVYDITNEESFAR-AKNWVKELQRQASPNIVIALSGNKADLAN- 125
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVF 171
+ V +E ++ A N+ ++E SAK+ V E+F
Sbjct: 126 -----------KRAVDFQEAQSYADD-NSLLFMETSAKTSMNVNEIF 160
>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|B Chain B, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|C Chain C, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|D Chain D, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
Length = 162
Score = 83.6 bits (205), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 89/167 (53%), Gaps = 16/167 (9%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDSKQVELALWDTAGQED 65
KLV +G+ + GKT L+ F D F Y T+ ++++ + ++ + V L LWDTAGQE
Sbjct: 3 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 62
Query: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 124
+ L P D+ V ++ + I + +S + KW +V+ +V I+LVGNK DL +
Sbjct: 63 FRSLIPSYIRDSTVAVVVYDITNVNSFQQ-TTKWIDDVRTERGSDVIIMLVGNKTDLAD- 120
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVF 171
+ V EEG A+++N ++E SAK+ V+++F
Sbjct: 121 -----------KRQVSIEEGERKAKELNVM-FIETSAKAGYNVKQLF 155
>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp
Analogue
Length = 180
Score = 83.6 bits (205), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 54/170 (31%), Positives = 86/170 (50%), Gaps = 21/170 (12%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQF-PEVYVPTV---FENYVADIEVDSKQVELALWDTAG 62
K+++VGD GKTCLL+ F F ++ TV F N V D VD +V+L +WDTAG
Sbjct: 12 KVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLD--VDGVKVKLQMWDTAG 69
Query: 63 QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN-VPIILVGNKKDL 121
QE + + Y D +L+ + + + S +NI + W E+ + + V ++L+GNK D
Sbjct: 70 QERFRSVTHAYYRDAHALLLLYDVTNKASFDNI-QAWLTEIHEYAQHDVALMLLGNKVD- 127
Query: 122 RNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVF 171
+ VK E+G +A++ ++E SAK+ V F
Sbjct: 128 -----------SAHERVVKREDGEKLAKEY-GLPFMETSAKTGLNVDLAF 165
>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Inactive Gdp-Bound Form
pdb|2FFQ|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Active Gtpgs-Bound Form
pdb|2E9S|A Chain A, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|B Chain B, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|C Chain C, Human Neuronal Rab6b In Three Intermediate Forms
Length = 171
Score = 83.6 bits (205), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 92/176 (52%), Gaps = 16/176 (9%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDSKQVELALWDTAGQED 65
KLV +G+ + GKT L+ F D F Y T+ ++++ + ++ + V L LWDTAGQE
Sbjct: 4 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 63
Query: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 124
+ L P D+ V ++ + I + +S + KW +V+ +V I+LVGNK DL +
Sbjct: 64 FRSLIPSYIRDSTVAVVVYDITNLNSFQQ-TSKWIDDVRTERGSDVIIMLVGNKTDLAD- 121
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
+ + EEG A++++ ++E SAK+ V+++F A L+
Sbjct: 122 -----------KRQITIEEGEQRAKELSVM-FIETSAKTGYNVKQLFRRVASALLE 165
>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|B Chain B, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|C Chain C, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|D Chain D, Crystal Structure Of Rab5-Gdp Complex
Length = 171
Score = 83.2 bits (204), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 82/167 (49%), Gaps = 16/167 (9%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVAD-IEVDSKQVELALWDTAGQED 65
KLV++G+ A GK+ L++ F K QF E T+ ++ + +D V+ +WDTAGQE
Sbjct: 9 KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQER 68
Query: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRND 124
Y L P Y ++ + I + +S + W E+ + PN+ I L GNK DL N
Sbjct: 69 YHSLAPXYYRGAQAAIVVYDITNEESFAR-AKNWVKELQRQASPNIVIALSGNKADLAN- 126
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVF 171
+ V +E ++ A N+ + E SAK+ V E+F
Sbjct: 127 -----------KRAVDFQEAQSYADD-NSLLFXETSAKTSXNVNEIF 161
>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp
pdb|2HEI|B Chain B, Crystal Structure Of Human Rab5b In Complex With Gdp
Length = 179
Score = 83.2 bits (204), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 85/167 (50%), Gaps = 16/167 (9%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDSKQVELALWDTAGQED 65
KLV++G+ A GK+ L++ F K QF E T+ ++ + +D V+ +WDTAGQE
Sbjct: 10 KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQER 69
Query: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRND 124
Y L P+ Y ++ + I + ++ + W E+ + P++ I L GNK DL N
Sbjct: 70 YHSLAPMYYRGAQAAIVVYDITNQETFAR-AKTWVKELQRQASPSIVIALAGNKADLAN- 127
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVF 171
+ V+ EE +A A N+ ++E SAK+ V ++F
Sbjct: 128 -----------KRMVEYEEAQAYADD-NSLLFMETSAKTAMNVNDLF 162
>pdb|4FMC|F Chain F, Espg-Rab1 Complex
Length = 117
Score = 83.2 bits (204), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 68/116 (58%), Gaps = 3/116 (2%)
Query: 8 LVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDY 66
L+++GD GK+CLL+ F+ D + E Y+ T+ ++ + IE+D K ++L +WDTAGQE +
Sbjct: 1 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 60
Query: 67 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDL 121
+ Y I++ + + +S N+ + W E+ + NV +LVGNK DL
Sbjct: 61 RTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLQEIDRYASENVNKLLVGNKCDL 115
>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp
pdb|1N6K|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp And Aluminum Fluoride
pdb|1N6L|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gtp
Length = 170
Score = 82.8 bits (203), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 83/167 (49%), Gaps = 16/167 (9%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVAD-IEVDSKQVELALWDTAGQED 65
KLV++G+ GK+ L++ F K QF E T+ ++ + +D V+ +WDTAGQE
Sbjct: 8 KLVLLGESPVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQER 67
Query: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRND 124
Y L P+ Y ++ + I + +S + W E+ + PN+ I L GNK DL N
Sbjct: 68 YHSLAPMYYRGAQAAIVVYDITNEESFAR-AKNWVKELQRQASPNIVIALSGNKADLAN- 125
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVF 171
+ V +E ++ A N+ ++E SAK+ V E+F
Sbjct: 126 -----------KRAVDFQEAQSYADD-NSLLFMETSAKTSMNVNEIF 160
>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
pdb|3MJH|C Chain C, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
Length = 168
Score = 82.8 bits (203), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 83/167 (49%), Gaps = 16/167 (9%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVAD-IEVDSKQVELALWDTAGQED 65
KLV++G+ A GK+ L++ F K QF E T+ ++ + +D V+ +WDTAG E
Sbjct: 7 KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLER 66
Query: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRND 124
Y L P+ Y ++ + I + +S + W E+ + PN+ I L GNK DL N
Sbjct: 67 YHSLAPMYYRGAQAAIVVYDITNEESFAR-AKNWVKELQRQASPNIVIALSGNKADLAN- 124
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVF 171
+ V +E ++ A N+ ++E SAK+ V E+F
Sbjct: 125 -----------KRAVDFQEAQSYADD-NSLLFMETSAKTSMNVNEIF 159
>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp
Length = 195
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 88/178 (49%), Gaps = 18/178 (10%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQF-PEVYVPTVFENYVADIEVDSKQVELALWDTAGQED 65
K++I+G+ GK+ LL+ F+ D F PE+ + V I VD + +LA+WDTAGQE
Sbjct: 17 KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQER 76
Query: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII--LVGNKKDLRN 123
+ L P Y +++ + + D+ + + W E++ +C I+ LVGNK D N
Sbjct: 77 FRTLTPSYYRGAQGVILVYDVTRRDTFVKL-DNWLNELETYCTRNDIVNXLVGNKIDKEN 135
Query: 124 DPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQV 181
V EG A+K ++ ++E SAK+ +GV+ FE +Q
Sbjct: 136 -------------REVDRNEGLKFARK-HSXLFIEASAKTCDGVQCAFEELVEKIIQT 179
>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue
Length = 201
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 90/167 (53%), Gaps = 16/167 (9%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQED 65
K+V++G+ GKTCL+ F++ FP T+ ++ + +E++ ++V+L +WDTAGQE
Sbjct: 28 KIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQER 87
Query: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN-VPIILVGNKKDLRND 124
+ + Y + +++ + I +S +PE W E++ + N V +LVGNK DL
Sbjct: 88 FRSITQSYYRSANALILTYDITCEESFRCLPE-WLREIEQYASNKVITVLVGNKIDLAER 146
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVF 171
+E+++ + E AQ + YLE SAK + V ++F
Sbjct: 147 ----REVSQQRAEEFSE------AQDM---YYLETSAKESDNVEKLF 180
>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp
Length = 169
Score = 81.6 bits (200), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/168 (33%), Positives = 88/168 (52%), Gaps = 16/168 (9%)
Query: 6 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQED 65
+K+ I+G + GK+ L I F + QF + Y PT+ + I V+ ++ L L DTAGQ++
Sbjct: 2 RKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDE 61
Query: 66 YDRLRPLSYP-DTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRN 123
Y + P +Y D + ++ +S+ S S E I + +PI+LVGNKKDL
Sbjct: 62 YS-IFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLH- 119
Query: 124 DPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVF 171
+ + EEG+A+A+ NA A+LE SAK + +VF
Sbjct: 120 -----------MERVISYEEGKALAESWNA-AFLESSAKENQTAVDVF 155
>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase
Length = 185
Score = 81.6 bits (200), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 87/172 (50%), Gaps = 16/172 (9%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQED 65
KL+++G+ GK+CLL+ FS D + Y+ T+ ++ + +E+D K V+L +WDTAGQE
Sbjct: 23 KLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQER 82
Query: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPI-ILVGNKKDLRND 124
+ + Y + I++ + + +S + + W E+ + + + +LVGNK DL++
Sbjct: 83 FRTITSSYYRGSHGIIIVYDVTDQESFNGV-KMWLQEIDRYATSTVLKLLVGNKCDLKD- 140
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATR 176
++ + V E A N +LE SA V + F T R
Sbjct: 141 -------KRVVEYDVAKEFADA-----NKMPFLETSALDSTNVEDAFLTMAR 180
>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With
Prenylated Ypt1 Gtpase
pdb|3CUE|F Chain F, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|L Chain L, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|R Chain R, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|X Chain X, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 206
Score = 81.6 bits (200), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 87/172 (50%), Gaps = 16/172 (9%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQED 65
KL+++G+ GK+CLL+ FS D + Y+ T+ ++ + +E+D K V+L +WDTAGQE
Sbjct: 10 KLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQER 69
Query: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPI-ILVGNKKDLRND 124
+ + Y + I++ + + +S + + W E+ + + + +LVGNK DL++
Sbjct: 70 FRTITSSYYRGSHGIIIVYDVTDQESFNGV-KMWLQEIDRYATSTVLKLLVGNKCDLKD- 127
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATR 176
++ + V E A N +LE SA V + F T R
Sbjct: 128 -------KRVVEYDVAKEFADA-----NKMPFLETSALDSTNVEDAFLTMAR 167
>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex
With Pde6d
Length = 181
Score = 81.6 bits (200), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 60/186 (32%), Positives = 94/186 (50%), Gaps = 20/186 (10%)
Query: 6 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQED 65
+K+ I+G + GK+ L I F + QF + Y PT+ + I V+ ++ L L DTAGQ++
Sbjct: 7 RKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDE 66
Query: 66 YDRLRPLSYP-DTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRN 123
Y + P +Y D + ++ +S+ S S E I + +PI+LVGNKKDL
Sbjct: 67 YS-IFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLH- 124
Query: 124 DPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVKK 183
+ + EEG+A+A+ NA A+LE SAK + +VF R + +
Sbjct: 125 -----------MERVISYEEGKALAESWNA-AFLESSAKENQTAVDVF----RRIILEAE 168
Query: 184 KKKGRC 189
K G C
Sbjct: 169 KMDGAC 174
>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex
With Gdp
Length = 192
Score = 81.6 bits (200), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 85/172 (49%), Gaps = 15/172 (8%)
Query: 2 AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDT 60
A + +++I+G GKT L+ F+ D F E TV ++ + +E+ K++ L +WDT
Sbjct: 23 ADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDT 82
Query: 61 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKK 119
AGQE ++ + Y I++ + I ++ +++P KW + K+ + ++LVGNK
Sbjct: 83 AGQERFNSITSAYYRSAKGIILVYDITKKETFDDLP-KWMKMIDKYASEDAELLLVGNKL 141
Query: 120 DLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVF 171
D D + ++G AQ+I + E SAK V E+F
Sbjct: 142 DCETD------------REITRQQGEKFAQQITGMRFCEASAKDNFNVDEIF 181
>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC3|C Chain C, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|A Chain A, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|C Chain C, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
Length = 175
Score = 81.3 bits (199), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 86/167 (51%), Gaps = 16/167 (9%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
K+++VG G GK+ L + F D+F E Y PT ++Y + +D ++V++ + DTAG EDY
Sbjct: 8 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGLEDY 67
Query: 67 DRLRPLSYPDTDVILMCFSIDSPDSLENIPE--KWTPEVKHFCPNVPIILVGNKKDLRND 124
+R + + L FSI +S + + VK NVP +LVGNK DL +
Sbjct: 68 AAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLVGNKSDLED- 125
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVF 171
+ V EE + A++ N Y+E SAK++ V +VF
Sbjct: 126 -----------KRQVSVEEAKNRAEQWNV-NYVETSAKTRANVDKVF 160
>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex
Length = 206
Score = 81.3 bits (199), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 87/172 (50%), Gaps = 16/172 (9%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQED 65
KL+++G+ GK+CLL+ FS D + Y+ T+ ++ + +E+D K V+L +WDTAGQE
Sbjct: 10 KLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQER 69
Query: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPI-ILVGNKKDLRND 124
+ + Y + I++ + + +S + + W E+ + + + +LVGNK DL++
Sbjct: 70 FRTITSSYYRGSHGIIIVYDVTDQESFNGV-KMWLQEIDRYATSTVLKLLVGNKCDLKD- 127
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATR 176
++ + V E A N +LE SA V + F T R
Sbjct: 128 -------KRVVEYDVAKEFADA-----NKMPFLETSALDSTNVEDAFLTMAR 167
>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Gly-12 Mutant Of
P21-H-Ras
Length = 166
Score = 81.3 bits (199), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 89/176 (50%), Gaps = 17/176 (9%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
KLV+VG GK+ L I ++ F + Y PT+ ++Y + +D + L + DTAGQE+Y
Sbjct: 5 KLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 64
Query: 67 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRND 124
+R + L F+I++ S E+I ++ ++K +VP++LVGNK DL
Sbjct: 65 SAMRDQYMRTGEGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL--- 120
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
V+ + + +A+ Y+E SAK+++GV + F T R Q
Sbjct: 121 ----------AARTVESRQAQDLARSY-GIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp
pdb|1XTR|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With
Gppnhp
pdb|1XTS|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gtp
Length = 177
Score = 81.3 bits (199), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 56/168 (33%), Positives = 88/168 (52%), Gaps = 16/168 (9%)
Query: 6 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQED 65
+K+ I+G + GK+ L I F + QF + Y PT+ + I V+ ++ L L DTAGQ++
Sbjct: 7 RKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDE 66
Query: 66 YDRLRPLSYP-DTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRN 123
Y + P +Y D + ++ +S+ S S E I + +PI+LVGNKKDL
Sbjct: 67 YS-IFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLH- 124
Query: 124 DPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVF 171
+ + EEG+A+A+ NA A+LE SAK + +VF
Sbjct: 125 -----------MERVISYEEGKALAESWNA-AFLESSAKENQTAVDVF 160
>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 81.3 bits (199), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 89/176 (50%), Gaps = 17/176 (9%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
KLV+VG GK+ L I ++ F + Y PT+ ++Y + +D + L + DTAGQE+Y
Sbjct: 5 KLVVVGARGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 64
Query: 67 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRND 124
+R + L F+I++ S E+I ++ ++K +VP++LVGNK DL
Sbjct: 65 SAMRDQYMRTGEGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL--- 120
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
V+ + + +A+ Y+E SAK+++GV + F T R Q
Sbjct: 121 ----------AARTVESRQAQDLARSY-GIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp
pdb|2HUP|B Chain B, Crystal Structure Of Human Rab43 In Complex With Gdp
Length = 201
Score = 80.9 bits (198), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 84/167 (50%), Gaps = 15/167 (8%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQED 65
KLV+VGD + GKTC++ F F E T+ ++ + +E+ K+V+L +WDTAGQE
Sbjct: 31 KLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQER 90
Query: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRND 124
+ + Y + ++ + I S ++P W +V+ + N+ +L+GNK DL
Sbjct: 91 FRTITQSYYRSANGAILAYDITKRSSFLSVPH-WIEDVRKYAGSNIVQLLIGNKSDL--- 146
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVF 171
EL + V E +++A+ + +E SAK V E F
Sbjct: 147 ----SELRE-----VSLAEAQSLAEHYDILCAIETSAKDSSNVEEAF 184
>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex
Length = 188
Score = 80.9 bits (198), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 57/186 (30%), Positives = 95/186 (51%), Gaps = 17/186 (9%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDSKQVELALWDTAGQED 65
KLV +G+ + GKT L+ F D F Y T+ ++++ + ++ + V L LWDTAG E
Sbjct: 8 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLER 67
Query: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 124
+ L P D+ V ++ + I + +S + KW +V+ +V I+LVGNK DL +
Sbjct: 68 FRSLIPSYIRDSTVAVVVYDITNVNSFQQTT-KWIDDVRTERGSDVIIMLVGNKTDLAD- 125
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVKKK 184
+ V EEG A+++N ++E SAK+ V+++F AAL +
Sbjct: 126 -----------KRQVSIEEGERKAKELNVM-FIETSAKAGYNVKQLFRRVA-AALPGMES 172
Query: 185 KKGRCR 190
+ R R
Sbjct: 173 TQDRSR 178
>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 80.5 bits (197), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 93/180 (51%), Gaps = 17/180 (9%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
KLV+VG GK+ L I ++ F + Y PT+ ++Y + +D + L + DTAGQE+Y
Sbjct: 6 KLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 65
Query: 67 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRND 124
+R + L F+I++ S E+I + ++K +VP++LVGNK DL
Sbjct: 66 SAMRDQYMRTGEGFLCVFAINNTKSFEDI-HHYREQIKRVKDSEDVPMVLVGNKSDL--- 121
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVKKK 184
P+ V ++ + +A+ ++E SAK+++GV + F T R + K+K
Sbjct: 122 PS----------RTVDTKQAQDLARSY-GIPFIETSAKTRQGVDDAFYTLVREIRKHKEK 170
>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Magnesium
pdb|1PLK|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
Length = 166
Score = 80.5 bits (197), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 89/176 (50%), Gaps = 17/176 (9%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
KLV+VG GK+ L I ++ F + Y PT+ ++Y + +D + L + DTAGQE+Y
Sbjct: 5 KLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 64
Query: 67 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRND 124
+R + L F+I++ S E+I ++ ++K +VP++LVGNK DL
Sbjct: 65 SAMRDQYMRTGEGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDLAG- 122
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
V+ + + +A+ Y+E SAK+++GV + F T R Q
Sbjct: 123 ------------RTVESRQAQDLARSY-GIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase
Length = 179
Score = 80.5 bits (197), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 85/179 (47%), Gaps = 22/179 (12%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQF----PEVYVPTVFENYVADIEVDSKQVELALWDTAG 62
K +I+GD GK+CLL F++ +F P + F + IEV ++++L +WDTAG
Sbjct: 17 KYIIIGDMGVGKSCLLHQFTEKKFMADCPHT-IGVEFGTRI--IEVSGQKIKLQIWDTAG 73
Query: 63 QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDL 121
QE + + Y LM + I + S N W + ++ PN IIL+GNK DL
Sbjct: 74 QERFRAVTRSYYRGAAGALMVYDI-TRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADL 132
Query: 122 RNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
Q V EE + A++ N +LE SAK+ E V + F A + Q
Sbjct: 133 E------------AQRDVTYEEAKQFAEE-NGLLFLEASAKTGENVEDAFLEAAKKIYQ 178
>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase
Length = 170
Score = 80.5 bits (197), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 88/167 (52%), Gaps = 16/167 (9%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDSKQVELALWDTAGQED 65
KLV +G+ + GKT L+ F D F Y T+ ++++ + ++ + + L LWDTAGQE
Sbjct: 8 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQER 67
Query: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 124
+ L P D+ ++ + I + +S + KW +V+ +V I+LVGNK DL +
Sbjct: 68 FRSLIPSYIRDSAAAVVVYDITNVNSFQQ-TTKWIDDVRTERGSDVIIMLVGNKTDLAD- 125
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVF 171
+ V EEG A+++N ++E SAK+ V+++F
Sbjct: 126 -----------KRQVSIEEGERKAKELNVM-FIETSAKAGYNVKQLF 160
>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group
pdb|1Z2A|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In P2(1)2(1)2(1) Space
Group
Length = 168
Score = 80.5 bits (197), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 85/175 (48%), Gaps = 15/175 (8%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDSKQVELALWDTAGQED 65
K+V+VG+GA GK+ ++ + K F + Y T+ +++ I+V+ + V L LWDTAGQE+
Sbjct: 7 KMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEE 66
Query: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDP 125
+D + Y ++ FS +S E I W +V ++P LV NK DL +D
Sbjct: 67 FDAITKAYYRGAQACVLVFSTTDRESFEAIS-SWREKVVAEVGDIPTALVQNKIDLLDDS 125
Query: 126 NTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
+K EE +A+++ + S K V EVF+ LQ
Sbjct: 126 ------------CIKNEEAEGLAKRLK-LRFYRTSVKEDLNVSEVFKYLAEKHLQ 167
>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal
Structure Of The Small G Protein Rab3a Complexed With
The Effector Domain Of Rabphilin-3a
Length = 203
Score = 80.5 bits (197), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 84/168 (50%), Gaps = 16/168 (9%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQED 65
K++I+G+ + GKT L ++ D F +V TV ++ V I + K+++L +WDTAG E
Sbjct: 10 KILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLER 69
Query: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRND 124
Y + Y ++ + I + +S N + W+ ++K + N ++LVGNK D +
Sbjct: 70 YRTITTAYYRGAXGFILXYDITNEESF-NAVQDWSTQIKTYSWDNAQVLLVGNKCDXED- 127
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFE 172
+ V E GR +A + F + E SAK V++ FE
Sbjct: 128 -----------ERVVSSERGRQLADHL-GFEFFEASAKDNINVKQTFE 163
>pdb|1VG1|A Chain A, Gdp-bound Rab7
pdb|1VG9|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|D Chain D, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|F Chain F, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|H Chain H, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
Length = 185
Score = 80.5 bits (197), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 85/180 (47%), Gaps = 20/180 (11%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDSKQVELALWDTAGQED 65
K++I+GD GKT L+ + +F Y T+ +++ ++ VD + V + +WDTAGQE
Sbjct: 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQER 69
Query: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPE-VKHFCP----NVPIILVGNKKD 120
+ L Y D ++ F + +P++ + + + W E + P N P +++GNK D
Sbjct: 70 FQSLGVAFYRGADCCVLVFDVTAPNTFKTL-DSWRDEFLIQASPRDPENFPFVVLGNKID 128
Query: 121 LRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
L N V + +A N Y E SAK V + F+T R AL+
Sbjct: 129 LEN-------------RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALK 175
>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1JAI|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Manganese
pdb|1PLJ|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|1PLL|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|821P|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Glycine-12 Mutant Of
P21h-Ras
Length = 166
Score = 80.1 bits (196), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 89/176 (50%), Gaps = 17/176 (9%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
KLV+VG GK+ L I ++ F + Y PT+ ++Y + +D + L + DTAGQE+Y
Sbjct: 5 KLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 64
Query: 67 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRND 124
+R + L F+I++ S E+I ++ ++K +VP++LVGNK DL
Sbjct: 65 SAMRDQYMRTGEGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL--- 120
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
V+ + + +A+ Y+E SAK+++GV + F T R Q
Sbjct: 121 ----------AARTVESRQAQDLARSY-GIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With Monoprenylated Rab7 Protein
pdb|1VG8|A Chain A, Gppnhp-Bound Rab7
pdb|1VG8|B Chain B, Gppnhp-Bound Rab7
pdb|1VG8|C Chain C, Gppnhp-Bound Rab7
pdb|1VG8|D Chain D, Gppnhp-Bound Rab7
Length = 207
Score = 80.1 bits (196), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 85/180 (47%), Gaps = 20/180 (11%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDSKQVELALWDTAGQED 65
K++I+GD GKT L+ + +F Y T+ +++ ++ VD + V + +WDTAGQE
Sbjct: 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQER 69
Query: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPE-VKHFCP----NVPIILVGNKKD 120
+ L Y D ++ F + +P++ + + + W E + P N P +++GNK D
Sbjct: 70 FQSLGVAFYRGADCCVLVFDVTAPNTFKTL-DSWRDEFLIQASPRDPENFPFVVLGNKID 128
Query: 121 LRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
L N V + +A N Y E SAK V + F+T R AL+
Sbjct: 129 LEN-------------RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALK 175
>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|B Chain B, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|C Chain C, Rab6-Gtp:gcc185 Rab Binding Domain Complex
Length = 211
Score = 79.3 bits (194), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 57/186 (30%), Positives = 95/186 (51%), Gaps = 17/186 (9%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDSKQVELALWDTAGQED 65
KLV +G+ + GKT L+ F D F Y T+ ++++ + ++ + V L LWDTAG E
Sbjct: 18 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLER 77
Query: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 124
+ L P D+ V ++ + I + +S + KW +V+ +V I+LVGNK DL +
Sbjct: 78 FRSLIPSYIRDSTVAVVVYDITNVNSFQQTT-KWIDDVRTERGSDVIIMLVGNKTDLAD- 135
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVKKK 184
+ V EEG A+++N ++E SAK+ V+++F AAL +
Sbjct: 136 -----------KRQVSIEEGERKAKELNVM-FIETSAKAGYNVKQLFRRVA-AALPGMES 182
Query: 185 KKGRCR 190
+ R R
Sbjct: 183 TQDRSR 188
>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution
Length = 170
Score = 79.3 bits (194), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 82/167 (49%), Gaps = 13/167 (7%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVAD-IEVDSKQVELALWDTAGQED 65
KLV++G+ A GK+ +++ F + F E PT+ ++ + ++ V+ +WDTAGQE
Sbjct: 5 KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQER 64
Query: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRND 124
+ L P Y + L+ + + P S W E+ + ++ I LVGNK D
Sbjct: 65 FASLAPXYYRNAQAALVVYDVTKPQSFIK-ARHWVKELHEQASKDIIIALVGNKID---- 119
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVF 171
L + + V EEG +A++ + E SAK+ E V +VF
Sbjct: 120 -----XLQEGGERKVAREEGEKLAEE-KGLLFFETSAKTGENVNDVF 160
>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|B Chain B, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|C Chain C, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|D Chain D, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|E Chain E, Structure Of Gtp-Bound L129f Mutant Rab7
Length = 207
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 84/180 (46%), Gaps = 20/180 (11%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDSKQVELALWDTAGQED 65
K++I+GD GKT L+ + +F Y T+ +++ ++ VD + V + +WDTAGQE
Sbjct: 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQER 69
Query: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPE-VKHFCP----NVPIILVGNKKD 120
+ L Y D ++ F + +P++ + + + W E + P N P +++GNK D
Sbjct: 70 FQSLGVAFYRGADCCVLVFDVTAPNTFKTL-DSWRDEFLIQASPRDPENFPFVVLGNKID 128
Query: 121 LRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
N V + +A N Y E SAK V + F+T R AL+
Sbjct: 129 FEN-------------RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALK 175
>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14
Length = 196
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 84/179 (46%), Gaps = 22/179 (12%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQF----PEVYVPTVFENYVADIEVDSKQVELALWDTAG 62
K +I+GD GK+CLL F++ +F P + F + IEV ++++L +WDTAG
Sbjct: 32 KYIIIGDMGVGKSCLLHQFTEKKFMADCPHT-IGVEFGTRI--IEVSGQKIKLQIWDTAG 88
Query: 63 QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDL 121
Q + + Y LM + I + S N W + ++ PN IIL+GNK DL
Sbjct: 89 QGRFRAVTRSYYRGAAGALMVYDI-TRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADL 147
Query: 122 RNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
Q V EE + A++ N +LE SAK+ E V + F A + Q
Sbjct: 148 E------------AQRDVTYEEAKQFAEE-NGLLFLEASAKTGENVEDAFLEAAKKIYQ 193
>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DST|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSU|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSN|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
Length = 189
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 92/182 (50%), Gaps = 20/182 (10%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
KLV+VG GK+ L I ++ F + Y PT+ ++Y + +D + L + DTAGQE+Y
Sbjct: 6 KLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 65
Query: 67 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRND 124
+R + L F+I++ S E+I + ++K +VP++LVGNK DL +
Sbjct: 66 SAMRDQYMRTGEGFLCVFAINNTKSFEDI-HHYREQIKRVKDSEDVPMVLVGNKCDLPSR 124
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVKKK 184
K+ + + P ++E SAK+++GV + F T R +++K
Sbjct: 125 TVDTKQAQDLARSYGIP--------------FIETSAKTRQGVDDAFYTLVR---EIRKH 167
Query: 185 KK 186
K+
Sbjct: 168 KE 169
>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
pdb|3SEA|B Chain B, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
Length = 167
Score = 77.8 bits (190), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 55/168 (32%), Positives = 87/168 (51%), Gaps = 16/168 (9%)
Query: 6 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQED 65
+K+ I+G + GK+ L I F + QF + PT+ + I V+ ++ L L DTAGQ++
Sbjct: 5 RKIAILGYRSVGKSSLTIQFVEGQFVDSADPTIENTFTKLITVNGQEYHLQLVDTAGQDE 64
Query: 66 YDRLRPLSYP-DTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRN 123
Y + P +Y D + ++ +S+ S S E I + +PI+LVGNKKDL
Sbjct: 65 YS-IFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLH- 122
Query: 124 DPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVF 171
+ + EEG+A+A+ NA A+LE SAK + +VF
Sbjct: 123 -----------MERVISYEEGKALAESWNA-AFLESSAKENQTAVDVF 158
>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed
With Gdp
Length = 162
Score = 77.4 bits (189), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 58/173 (33%), Positives = 88/173 (50%), Gaps = 17/173 (9%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDSKQVELALWDTAGQED 65
KLV +G+ A GKT ++ F D F Y T+ ++++ + +D V L LWDTAGQE
Sbjct: 3 KLVFLGEQAVGKTSIITRFXYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQER 62
Query: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRND 124
+ L P D+ ++ + I + S EN KW ++ +V I LVGNK DL
Sbjct: 63 FRSLIPSYIRDSAAAIVVYDITNRQSFENTT-KWIQDILNERGKDVIIALVGNKTDL--- 118
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVF-ETATR 176
+L K V EEG AQ+ N + E SAK+ ++ +F +TA++
Sbjct: 119 ----GDLRK-----VTYEEGXQKAQEYNT-XFHETSAKAGHNIKVLFKKTASK 161
>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|B Chain B, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|C Chain C, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|D Chain D, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1YHN|A Chain A, Structure Basis Of Rilp Recruitment By Rab7
Length = 207
Score = 77.0 bits (188), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 84/180 (46%), Gaps = 20/180 (11%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDSKQVELALWDTAGQED 65
K++I+GD GKT L+ + +F Y T+ +++ ++ VD + V + +WDTAG E
Sbjct: 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGLER 69
Query: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPE-VKHFCP----NVPIILVGNKKD 120
+ L Y D ++ F + +P++ + + + W E + P N P +++GNK D
Sbjct: 70 FQSLGVAFYRGADCCVLVFDVTAPNTFKTL-DSWRDEFLIQASPRDPENFPFVVLGNKID 128
Query: 121 LRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
L N V + +A N Y E SAK V + F+T R AL+
Sbjct: 129 LEN-------------RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALK 175
>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l)
pdb|4DKX|B Chain B, Crystal Structure Of The Rab 6a'(Q72l)
Length = 216
Score = 77.0 bits (188), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 55/186 (29%), Positives = 94/186 (50%), Gaps = 17/186 (9%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDSKQVELALWDTAGQED 65
KLV +G+ + GKT L+ F D F Y T+ ++++ + ++ + + L LWDTAG E
Sbjct: 15 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLER 74
Query: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 124
+ L P D+ ++ + I + +S + KW +V+ +V I+LVGNK DL +
Sbjct: 75 FRSLIPSYIRDSAAAVVVYDITNVNSFQQTT-KWIDDVRTERGSDVIIMLVGNKTDLAD- 132
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVKKK 184
+ V EEG A+++N ++E SAK+ V+++F AAL +
Sbjct: 133 -----------KRQVSIEEGERKAKELNVM-FIETSAKAGYNVKQLFRRVA-AALPGMES 179
Query: 185 KKGRCR 190
+ R R
Sbjct: 180 TQDRSR 185
>pdb|2BKU|A Chain A, Kap95p:rangtp Complex
pdb|2BKU|C Chain C, Kap95p:rangtp Complex
Length = 177
Score = 76.6 bits (187), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 66/121 (54%), Gaps = 2/121 (1%)
Query: 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDSKQVELALWDTAG 62
++ KLV+VGDG GKT + +F + YVPT+ E + + ++ +WDTAG
Sbjct: 9 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAG 68
Query: 63 QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLR 122
QE + LR Y ++ F + S + +N+P W ++ C N+PI+L GNK D++
Sbjct: 69 QEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHRDLVRVCENIPIVLCGNKVDIK 127
Query: 123 N 123
+
Sbjct: 128 D 128
>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
pdb|2ERX|B Chain B, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
Length = 172
Score = 76.3 bits (186), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 81/168 (48%), Gaps = 15/168 (8%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
++ + G G GK+ L++ F K F E Y+PTV + Y I D L + DT G +
Sbjct: 5 RVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQF 64
Query: 67 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTP--EVKHFCPNVPIILVGNKKDLRND 124
++ LS ++ +SI S SLE + + E+K ++PI+LVGNK D
Sbjct: 65 PAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCD--ES 122
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFE 172
P+ V+ E A+A+ A++E SAK V+E+F+
Sbjct: 123 PS----------REVQSSEAEALARTWKC-AFMETSAKLNHNVKELFQ 159
>pdb|1BYU|A Chain A, Canine Gdp-Ran
pdb|1BYU|B Chain B, Canine Gdp-Ran
Length = 216
Score = 75.9 bits (185), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 66/121 (54%), Gaps = 2/121 (1%)
Query: 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDSKQVELALWDTAG 62
++ KLV+VGDG GKT + +F + YVPT+ E + + ++ +WDTAG
Sbjct: 9 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAG 68
Query: 63 QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLR 122
QE + LR Y ++ F + S + +N+P W ++ C N+PI+L GNK D++
Sbjct: 69 QEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHRDLVRVCENIPIVLCGNKVDIK 127
Query: 123 N 123
+
Sbjct: 128 D 128
>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp
pdb|2P5S|B Chain B, Rab Domain Of Human Rasef In Complex With Gdp
Length = 199
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 87/180 (48%), Gaps = 13/180 (7%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQED 65
K+V+ GD A GK+ L+ K++F E T+ ++ + + VD ++ L LWDTAGQE
Sbjct: 30 KIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQER 89
Query: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRND 124
+ + + D +L+ + + S NI E W ++ VPI+LVGNK D+R+
Sbjct: 90 FRSIAKSYFRKADGVLLLYDVTCEKSFLNIRE-WVDMIEDAAHETVPIMLVGNKADIRDT 148
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVKKK 184
T Q+ V G +A A L C +K+G + E A +VKK+
Sbjct: 149 AAT------EGQKCVPGHFGEKLAMTYGA---LFCETSAKDG-SNIVEAVLHLAREVKKR 198
>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp
pdb|2O52|B Chain B, Crystal Structure Of Human Rab4b In Complex With Gdp
Length = 200
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 81/178 (45%), Gaps = 20/178 (11%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADI-EVDSKQVELALWDTAGQED 65
K +++G GK+CLL F +++F + T+ + + + V K V+L +WDTAGQE
Sbjct: 27 KFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQER 86
Query: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDP 125
+ + Y L+ + I S ++ ++ T PN+ +IL GNKKDL DP
Sbjct: 87 FRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDL--DP 144
Query: 126 N---TIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
T E ++ QE N +LE SA + E V E F R L
Sbjct: 145 EREVTFLEASRFAQE--------------NELMFLETSALTGENVEEAFLKCARTILN 188
>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi
Length = 223
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 79/168 (47%), Gaps = 16/168 (9%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDSKQVELALWDTAGQED 65
K+V++GD GK+ LL F+K++F T+ + +E++ K+++ +WDTAGQE
Sbjct: 15 KIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQER 74
Query: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRND 124
Y + Y L+ + I S EN W E++ NV + L+GNK DL
Sbjct: 75 YRAITSAYYRGAVGALIVYDISKSSSYENC-NHWLSELRENADDNVAVGLIGNKSDL--- 130
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFE 172
V EE + AQ+ N + E SA + E V + FE
Sbjct: 131 ---------AHLRAVPTEESKTFAQE-NQLLFTETSALNSENVDKAFE 168
>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant
pdb|1QG4|B Chain B, Canine Gdp-Ran F72y Mutant
Length = 216
Score = 74.3 bits (181), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 65/121 (53%), Gaps = 2/121 (1%)
Query: 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDSKQVELALWDTAG 62
++ KLV+VGDG GKT + +F + YV T+ E + + ++ +WDTAG
Sbjct: 9 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAG 68
Query: 63 QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLR 122
QE Y LR Y ++ F + S + +N+P W ++ C N+PI+L GNK D++
Sbjct: 69 QEKYGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHRDLVRVCENIPIVLCGNKVDIK 127
Query: 123 N 123
+
Sbjct: 128 D 128
>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a
pdb|2BME|A Chain A, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|B Chain B, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|C Chain C, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|D Chain D, High Resolution Structure Of Gppnhp-Bound Human Rab4a
Length = 186
Score = 74.3 bits (181), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 80/177 (45%), Gaps = 18/177 (10%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADI-EVDSKQVELALWDTAGQED 65
K +++G+ GK+CLL F + +F + T+ + + I V K V+L +WDTAGQE
Sbjct: 12 KFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQER 71
Query: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRND 124
+ + Y L+ + I S ++ N W + + N+ IIL GNKKDL D
Sbjct: 72 FRSVTRSYYRGAAGALLVYDITSRETY-NALTNWLTDARMLASQNIVIILCGNKKDLDAD 130
Query: 125 PN-TIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
T E ++ QE N +LE SA + E V E F R L
Sbjct: 131 REVTFLEASRFAQE--------------NELMFLETSALTGENVEEAFVQCARKILN 173
>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|B Chain B, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|C Chain C, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|D Chain D, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|E Chain E, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
Length = 181
Score = 73.9 bits (180), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 87/184 (47%), Gaps = 17/184 (9%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEV-DSKQVELALWDTAGQE 64
K+V++GD GK+ LL F++D+F T+ E I++ ++K ++ +WDTAGQE
Sbjct: 9 KIVLIGDSGVGKSNLLSRFTRDEFNLESKSTIGVEFATKSIQLKNNKIIKAQIWDTAGQE 68
Query: 65 DYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRN 123
Y + Y L+ + I +S ENI EKW E++ N+ I+LVGNK DL++
Sbjct: 69 RYRAITSAYYRGAVGALLVYDITKKNSFENI-EKWLKELRDNADSNIVILLVGNKSDLKH 127
Query: 124 DPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVKK 183
+ + A+K A++E SA V F V++
Sbjct: 128 ------------LRVINDNDATQYAKK-EKLAFIETSALEATNVELAFHQLLNEIYNVRQ 174
Query: 184 KKKG 187
KK+
Sbjct: 175 KKQA 178
>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 176
Score = 73.9 bits (180), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 65/121 (53%), Gaps = 2/121 (1%)
Query: 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDSKQVELALWDTAG 62
++ KLV+VGDG GKT + +F + YV T+ E + + ++ +WDTAG
Sbjct: 9 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAG 68
Query: 63 QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLR 122
QE + LR Y ++ F + S + +N+P W ++ C N+PI+L GNK D++
Sbjct: 69 QEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHRDLVRVCENIPIVLCGNKVDIK 127
Query: 123 N 123
+
Sbjct: 128 D 128
>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a
Length = 175
Score = 73.2 bits (178), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 80/177 (45%), Gaps = 18/177 (10%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADI-EVDSKQVELALWDTAGQED 65
K +++G+ GK+CLL F + +F + T+ + + I V K V+L +WDTAGQE
Sbjct: 13 KFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQER 72
Query: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRND 124
+ + Y L+ + I S ++ N W + + N+ IIL GNKKDL D
Sbjct: 73 FRSVTRSYYRGAAGALLVYDITSRETY-NALTNWLTDARMLASQNIVIILCGNKKDLDAD 131
Query: 125 PN-TIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
T E ++ QE N +LE SA + E V E F R L
Sbjct: 132 REVTFLEASRFAQE--------------NELMFLETSALTGEDVEEAFVQCARKILN 174
>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex
pdb|1RRP|C Chain C, Structure Of The Ran-Gppnhp-Ranbd1 Complex
Length = 204
Score = 73.2 bits (178), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 65/121 (53%), Gaps = 2/121 (1%)
Query: 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDSKQVELALWDTAG 62
++ KLV+VGDG GKT + +F + YV T+ E + + ++ +WDTAG
Sbjct: 2 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAG 61
Query: 63 QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLR 122
QE + LR Y ++ F + S + +N+P W ++ C N+PI+L GNK D++
Sbjct: 62 QEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHRDLVRVCENIPIVLCGNKVDIK 120
Query: 123 N 123
+
Sbjct: 121 D 121
>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp
Analogue
Length = 192
Score = 73.2 bits (178), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 93/178 (52%), Gaps = 17/178 (9%)
Query: 2 AAIRK-KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDSKQVELALWD 59
+AIR+ K+ ++GD GK+ ++ F +D F PT+ +++ + ++ + +WD
Sbjct: 19 SAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWD 78
Query: 60 TAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNK 118
TAGQE + L P+ Y + ++ + I DS + +KW E+K P N+ + + GNK
Sbjct: 79 TAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTL-KKWVKELKEHGPENIVMAIAGNK 137
Query: 119 KDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATR 176
DL + +++ P+K + + A+ I A +E SAK+ + E+F+ +R
Sbjct: 138 CDLSD----------IREVPLK--DAKEYAESIGAIV-VETSAKNAINIEELFQGISR 182
>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex
pdb|1A2K|D Chain D, Gdpran-Ntf2 Complex
pdb|1A2K|E Chain E, Gdpran-Ntf2 Complex
pdb|1IBR|A Chain A, Complex Of Ran With Importin Beta
pdb|1IBR|C Chain C, Complex Of Ran With Importin Beta
pdb|1I2M|A Chain A, Ran-Rcc1-So4 Complex
pdb|1I2M|C Chain C, Ran-Rcc1-So4 Complex
pdb|1K5D|A Chain A, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|D Chain D, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|G Chain G, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|J Chain J, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|A Chain A, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|D Chain D, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|G Chain G, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|J Chain J, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|3CH5|A Chain A, The Crystal Structure Of The Rangdp-Nup153znf2 Complex
pdb|3A6P|C Chain C, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|3A6P|H Chain H, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|4GPT|A Chain A, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
pdb|4GMX|A Chain A, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
pdb|4HAT|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1- Ran-ranbp1
pdb|4HAV|A Chain A, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
pdb|4HAW|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
pdb|4HAX|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1(k579a)-ran-ranbp1
pdb|4HAY|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
pdb|4HAZ|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
pdb|4HB0|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
pdb|4HB2|A Chain A, Crystal Structure Of Crm1-ran-ranbp1
pdb|4HB3|A Chain A, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
pdb|4HB4|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 216
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 65/121 (53%), Gaps = 2/121 (1%)
Query: 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDSKQVELALWDTAG 62
++ KLV+VGDG GKT + +F + YV T+ E + + ++ +WDTAG
Sbjct: 9 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAG 68
Query: 63 QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLR 122
QE + LR Y ++ F + S + +N+P W ++ C N+PI+L GNK D++
Sbjct: 69 QEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHRDLVRVCENIPIVLCGNKVDIK 127
Query: 123 N 123
+
Sbjct: 128 D 128
>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
pdb|3EA5|C Chain C, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
Length = 216
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 65/121 (53%), Gaps = 2/121 (1%)
Query: 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDSKQVELALWDTAG 62
++ KLV+VGDG GKT + +F + YV T+ E + + ++ +WDTAG
Sbjct: 9 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAG 68
Query: 63 QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLR 122
QE + LR Y ++ F + S + +N+P W ++ C N+PI+L GNK D++
Sbjct: 69 QEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHRDLVRVCENIPIVLCGNKVDIK 127
Query: 123 N 123
+
Sbjct: 128 D 128
>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp
pdb|3GJ0|B Chain B, Crystal Structure Of Human Rangdp
pdb|3GJ3|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf2 Complex
Length = 221
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 65/121 (53%), Gaps = 2/121 (1%)
Query: 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDSKQVELALWDTAG 62
++ KLV+VGDG GKT + +F + YV T+ E + + ++ +WDTAG
Sbjct: 14 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAG 73
Query: 63 QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLR 122
QE + LR Y ++ F + S + +N+P W ++ C N+PI+L GNK D++
Sbjct: 74 QEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP-NWHRDLVRVCENIPIVLCGNKVDIK 132
Query: 123 N 123
+
Sbjct: 133 D 133
>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 216
Score = 72.4 bits (176), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 65/121 (53%), Gaps = 2/121 (1%)
Query: 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDSKQVELALWDTAG 62
++ KLV+VGDG GKT + +F + YV T+ E + + ++ +WDTAG
Sbjct: 9 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAG 68
Query: 63 QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLR 122
QE + LR Y ++ F + S + +N+P W ++ C N+PI+L GNK D++
Sbjct: 69 QEKFGGLRDGYYIQAQCAIIXFDVTSRVTYKNVPN-WHRDLVRVCENIPIVLCGNKVDIK 127
Query: 123 N 123
+
Sbjct: 128 D 128
>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution
pdb|1KY3|A Chain A, Gdp-Bound Ypt7p At 1.35 A Resolution
Length = 182
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 86/181 (47%), Gaps = 19/181 (10%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDSKQV-ELALWDTAGQE 64
K++I+GD GKT L+ + D++ + Y T+ +++ ++ VD +V + +WDTAGQE
Sbjct: 10 KVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQE 69
Query: 65 DYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPE-VKHFCPN----VPIILVGNKK 119
+ L Y D ++ + + + S ENI + W E + H N P +++GNK
Sbjct: 70 RFQSLGVAFYRGADCCVLVYDVTNASSFENI-KSWRDEFLVHANVNSPETFPFVILGNKI 128
Query: 120 DLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAAL 179
D + E K QE +A+ + SAK+ V FE R+AL
Sbjct: 129 DAEESKKIVSE--KSAQE---------LAKSLGDIPLFLTSAKNAINVDTAFEEIARSAL 177
Query: 180 Q 180
Q
Sbjct: 178 Q 178
>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex
Length = 172
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 63/117 (53%), Gaps = 2/117 (1%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDSKQVELALWDTAGQED 65
KLV+VGDG GKT + +F + Y+ T+ E + + +++ +WDTAG E
Sbjct: 7 KLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLEK 66
Query: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLR 122
+ LR Y + ++ F + S + +N+P W ++ C N+PI+L GNK D++
Sbjct: 67 FGGLRDGYYINAQCAIIMFDVTSRITYKNVPN-WHRDLVRVCENIPIVLCGNKVDVK 122
>pdb|3ICQ|B Chain B, Karyopherin Nuclear State
pdb|3ICQ|C Chain C, Karyopherin Nuclear State
Length = 171
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 63/117 (53%), Gaps = 2/117 (1%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDSKQVELALWDTAGQED 65
KLV+VGDG GKT + +F + Y+ T+ E + + +++ +WDTAG E
Sbjct: 6 KLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLEK 65
Query: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLR 122
+ LR Y + ++ F + S + +N+P W ++ C N+PI+L GNK D++
Sbjct: 66 FGGLRDGYYINAQCAIIMFDVTSRITYKNVPN-WHRDLVRVCENIPIVLCGNKVDVK 121
>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp
pdb|2F7S|B Chain B, The Crystal Structure Of Human Rab27b Bound To Gdp
Length = 217
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 80/180 (44%), Gaps = 27/180 (15%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQ-----------VEL 55
KL+ +GD GKT L ++ ++F ++ TV ++ V + Q V L
Sbjct: 27 KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHL 86
Query: 56 ALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK--HFCPNVPII 113
LWDTAGQE + L + D L+ F + S S N+ W +++ +C N I+
Sbjct: 87 QLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNV-RNWMSQLQANAYCENPDIV 145
Query: 114 LVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFET 173
L+GNK DL + Q V + R +A K Y E SA + + V + ET
Sbjct: 146 LIGNKADLPD------------QREVNERQARELADKY-GIPYFETSAATGQNVEKAVET 192
>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|B Chain B, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|C Chain C, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|D Chain D, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|1IOZ|A Chain A, Crystal Structure Of The C-Ha-Ras Protein Prepared By The
Cell-Free Synthesis
pdb|1AA9|A Chain A, Human C-Ha-Ras(1-171)(Dot)gdp, Nmr, Minimized Average
Structure
pdb|1Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 85/170 (50%), Gaps = 17/170 (10%)
Query: 18 KTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDT 77
K+ L I ++ F + Y PT+ ++Y + +D + L + DTAGQE+Y +R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 78 DVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDPNTIKELNKMK 135
+ L F+I++ S E+I ++ ++K +VP++LVGNK DL
Sbjct: 76 EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL-------------A 121
Query: 136 QEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVKKKK 185
V+ + + +A+ Y+E SAK+++GV + F T R Q K +K
Sbjct: 122 ARTVESRQAQDLARSY-GIPYIETSAKTRQGVEDAFYTLVREIRQHKLRK 170
>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 85/170 (50%), Gaps = 17/170 (10%)
Query: 18 KTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDT 77
K+ L I ++ F + Y PT+ ++Y + +D + L + DTAGQE+Y +R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 78 DVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDPNTIKELNKMK 135
+ L F+I++ S E+I ++ ++K +VP++LVGNK DL
Sbjct: 76 EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL-------------A 121
Query: 136 QEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVKKKK 185
V+ + + +A+ Y+E SAK+++GV + F T R Q K +K
Sbjct: 122 ARTVESRQAQDLARSY-GIPYIETSAKTRQGVEDAFYTLVREIRQHKLRK 170
>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|B Chain B, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|C Chain C, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|D Chain D, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
Length = 199
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 83/179 (46%), Gaps = 22/179 (12%)
Query: 18 KTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDT 77
K+ L++ F K F + Y+PT+ + Y I D L + DT G + ++ LS
Sbjct: 21 KSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKG 80
Query: 78 DVILMCFSIDSPDSLENIP--EKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMK 135
++ FS+ S SLE + K ++K ++P++LVGNK D
Sbjct: 81 HAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCD-------------ET 127
Query: 136 QEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVF------ETATRAALQVKKKKKGR 188
Q V E +A+AQ+ A++E SAK V+E+F ET +L + K+ G+
Sbjct: 128 QREVDTREAQAVAQEWKC-AFMETSAKMNYNVKELFQELLTLETRRNMSLNIDGKRSGK 185
>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
Length = 189
Score = 71.6 bits (174), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 85/170 (50%), Gaps = 17/170 (10%)
Query: 18 KTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDT 77
K+ L I ++ F + Y PT+ ++Y + +D + L + DTAGQE+Y +R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 78 DVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDPNTIKELNKMK 135
+ L F+I++ S E+I ++ ++K +VP++LVGNK DL
Sbjct: 76 EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL-------------A 121
Query: 136 QEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVKKKK 185
V+ + + +A+ Y+E SAK+++GV + F T R Q K +K
Sbjct: 122 ARTVESRQAQDLARSY-GIPYIETSAKTRQGVEDAFYTLVREIRQHKLRK 170
>pdb|2CLD|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp (2)
Length = 166
Score = 71.2 bits (173), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 82/165 (49%), Gaps = 17/165 (10%)
Query: 18 KTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDT 77
K+ L I ++ F + Y PT+ ++Y + +D + L + DTAGQE+Y +R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 78 DVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDPNTIKELNKMK 135
+ L F+I++ S E+I ++ ++K +VP++LVGNK DL
Sbjct: 76 EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKSDL-------------A 121
Query: 136 QEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
V+ + + +A+ Y+E SAK+++GV + F T R Q
Sbjct: 122 ARTVESRQAQDLARSY-GIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex
Length = 182
Score = 70.9 bits (172), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 2/121 (1%)
Query: 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDSKQVELALWDTAG 62
++ KLV+VGDG GKT + +F + YV T+ E + + ++ +WDTAG
Sbjct: 11 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAG 70
Query: 63 QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLR 122
E + LR Y ++ F + S + +N+P W ++ C N+PI+L GNK D++
Sbjct: 71 LEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHRDLVRVCENIPIVLCGNKVDIK 129
Query: 123 N 123
+
Sbjct: 130 D 130
>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras
Length = 166
Score = 70.9 bits (172), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 82/165 (49%), Gaps = 17/165 (10%)
Query: 18 KTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDT 77
K+ L I ++ F E Y PT+ ++Y + +D + L + DTAGQE+Y +R
Sbjct: 16 KSALTIQLIQNHFVEKYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 78 DVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDPNTIKELNKMK 135
+ L F+I++ S E+I ++ ++K +VP++LVGNK DL
Sbjct: 76 EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL-------------A 121
Query: 136 QEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
V+ + + +A+ Y+E SAK+++GV + F T R Q
Sbjct: 122 ARTVESRQAQDLARSY-GIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With
Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp)
Length = 219
Score = 70.9 bits (172), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 63/117 (53%), Gaps = 2/117 (1%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDSKQVELALWDTAGQED 65
KLV+VGDG GKT + +F + Y+ T+ E + + +++ +WDTAG E
Sbjct: 14 KLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLEK 73
Query: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLR 122
+ LR Y + ++ F + S + +N+P W ++ C N+PI+L GNK D++
Sbjct: 74 FGGLRDGYYINAQCAIIMFDVTSRITYKNVPN-WHRDLVRVCENIPIVLCGNKVDVK 129
>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 70.9 bits (172), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 82/165 (49%), Gaps = 17/165 (10%)
Query: 18 KTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDT 77
K+ L I ++ F + Y PT+ E+Y + +D + L + DTAGQE+Y +R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEESYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 78 DVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDPNTIKELNKMK 135
+ L F+I++ S E+I ++ ++K +VP++LVGNK DL
Sbjct: 76 EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL-------------A 121
Query: 136 QEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
V+ + + +A+ Y+E SAK+++GV + F T R Q
Sbjct: 122 ARTVESRQAQDLARSY-GIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBY|F Chain F, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBZ|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NBZ|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NC0|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
pdb|3NC0|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
Length = 176
Score = 70.5 bits (171), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 2/121 (1%)
Query: 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDSKQVELALWDTAG 62
++ KLV+VGDG GKT + +F + YV T+ E + + ++ +WDTAG
Sbjct: 5 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAG 64
Query: 63 QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLR 122
E + LR Y ++ F + S + +N+P W ++ C N+PI+L GNK D++
Sbjct: 65 LEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHRDLVRVCENIPIVLCGNKVDIK 123
Query: 123 N 123
+
Sbjct: 124 D 124
>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase
Length = 189
Score = 70.5 bits (171), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 69/121 (57%), Gaps = 5/121 (4%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVAD-IEVDSKQVELALWDTAGQED 65
K++++GD GKTCL F +FP+ T+ ++ +++D +++++ LWDTAGQE
Sbjct: 22 KIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQER 81
Query: 66 YDR-LRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPN-VPIILVGNKKDLR 122
+ + + Y + ++ + + + S ++P W E K H N +P ILVGNK DLR
Sbjct: 82 FRKSMVQHYYRNVHAVVFVYDMTNMASFHSLP-AWIEECKQHLLANDIPRILVGNKCDLR 140
Query: 123 N 123
+
Sbjct: 141 S 141
>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
pdb|1LFD|D Chain D, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
Length = 167
Score = 70.5 bits (171), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 83/167 (49%), Gaps = 17/167 (10%)
Query: 18 KTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDT 77
K+ L I ++ F + Y PT+ ++Y + +D + L + DTAGQE+Y +R
Sbjct: 16 KSALTIQLIQNHFVDKYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 78 DVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDPNTIKELNKMK 135
+ L F+I++ S E+I ++ ++K +VP++LVGNK DL
Sbjct: 76 EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL-------------A 121
Query: 136 QEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVK 182
V+ + + +A+ Y+E SAK+++GV + F T R Q K
Sbjct: 122 ARTVESRQAQDLARSY-GIPYIETSAKTRQGVEDAFYTLVREIRQHK 167
>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant
Length = 216
Score = 70.5 bits (171), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 2/121 (1%)
Query: 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDSKQVELALWDTAG 62
++ KLV+VGDG GKT + +F + YV T+ E + + ++ +WDTAG
Sbjct: 9 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAG 68
Query: 63 QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLR 122
QE + L Y ++ F + S + +N+P W ++ C N+PI+L GNK D++
Sbjct: 69 QEKFGGLEDGYYIQAQCAIIMFDVTSRVTYKNVP-NWHRDLVRVCENIPIVLCGNKVDIK 127
Query: 123 N 123
+
Sbjct: 128 D 128
>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
pdb|2IEY|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
Length = 195
Score = 70.5 bits (171), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 82/180 (45%), Gaps = 27/180 (15%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV----------FENYVAD-IEVDSKQVEL 55
KL+ +GD GKT L ++ ++F ++ TV ++ AD + +V L
Sbjct: 13 KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHL 72
Query: 56 ALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK--HFCPNVPII 113
LWDTAG E + L + D L+ F + S S N+ W +++ +C N I+
Sbjct: 73 QLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNV-RNWXSQLQANAYCENPDIV 131
Query: 114 LVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFET 173
L+GNK DL P+ Q V + R +A+K Y E SA + + V + ET
Sbjct: 132 LIGNKADL---PD---------QREVNERQARELAEKY-GIPYFETSAATGQNVEKSVET 178
>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
pdb|1Z0K|C Chain C, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
Length = 172
Score = 70.5 bits (171), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 79/177 (44%), Gaps = 18/177 (10%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADI-EVDSKQVELALWDTAGQED 65
K +++G+ GK+CLL F + +F + T+ + + I V K V+L +WDTAG E
Sbjct: 10 KFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGLER 69
Query: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRND 124
+ + Y L+ + I S ++ N W + + N+ IIL GNKKDL D
Sbjct: 70 FRSVTRSYYRGAAGALLVYDITSRETY-NALTNWLTDARMLASQNIVIILCGNKKDLDAD 128
Query: 125 PN-TIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
T E ++ QE N +LE SA + E V E F R L
Sbjct: 129 REVTFLEASRFAQE--------------NELMFLETSALTGEDVEEAFVQCARKILN 171
>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras
pdb|2C5L|B Chain B, Structure Of Plc Epsilon Ras Association Domain With Hras
Length = 173
Score = 70.1 bits (170), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 82/165 (49%), Gaps = 17/165 (10%)
Query: 18 KTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDT 77
K+ L I ++ F + Y PT+ ++Y + +D + L + DTAGQE+Y +R
Sbjct: 23 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 82
Query: 78 DVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDPNTIKELNKMK 135
+ L F+I++ S E+I ++ ++K +VP++LVGNK DL
Sbjct: 83 EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL-------------A 128
Query: 136 QEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
V+ + + +A+ Y+E SAK+++GV + F T R Q
Sbjct: 129 ARTVESRQAQDLARSY-GIPYIETSAKTRQGVEDAFYTLVREIRQ 172
>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
pdb|2ZET|B Chain B, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
Length = 203
Score = 70.1 bits (170), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 82/180 (45%), Gaps = 27/180 (15%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV----------FENYVAD-IEVDSKQVEL 55
KL+ +GD GKT L ++ ++F ++ TV ++ AD + +V L
Sbjct: 13 KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHL 72
Query: 56 ALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK--HFCPNVPII 113
LWDTAG E + L + D L+ F + S S N+ W +++ +C N I+
Sbjct: 73 QLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNV-RNWXSQLQANAYCENPDIV 131
Query: 114 LVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFET 173
L+GNK DL P+ Q V + R +A+K Y E SA + + V + ET
Sbjct: 132 LIGNKADL---PD---------QREVNERQARELAEKY-GIPYFETSAATGQNVEKSVET 178
>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|C Chain C, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|D Chain D, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|B Chain B, Canine Gdp-Ran Q69l Mutant
pdb|3GJX|C Chain C, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3GJX|F Chain F, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
Length = 216
Score = 70.1 bits (170), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 2/121 (1%)
Query: 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDSKQVELALWDTAG 62
++ KLV+VGDG GKT + +F + YV T+ E + + ++ +WDTAG
Sbjct: 9 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAG 68
Query: 63 QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLR 122
E + LR Y ++ F + S + +N+P W ++ C N+PI+L GNK D++
Sbjct: 69 LEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHRDLVRVCENIPIVLCGNKVDIK 127
Query: 123 N 123
+
Sbjct: 128 D 128
>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1
Length = 201
Score = 69.7 bits (169), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 91/191 (47%), Gaps = 18/191 (9%)
Query: 6 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQED 65
+K+VI+G GKT L F + +F E Y PTV Y + + + L L DTAGQ++
Sbjct: 25 RKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDE 84
Query: 66 YDRLRPLSY-PDTDVILMCFSIDSPDSLENIPEKWTP-EVKHFCPNVPIILVGNKKDLRN 123
Y L P S+ ++ +S+ S S + I + H VP++LVGNK DL
Sbjct: 85 YSIL-PYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADL-- 141
Query: 124 DPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVKK 183
P + V+ EG+ +A+ A ++E SA+ + + +F + +V+
Sbjct: 142 SP----------EREVQAVEGKKLAESWGA-TFMESSARENQLTQGIFTKVIQEIARVEN 190
Query: 184 K--KKGRCRLL 192
++ RC L+
Sbjct: 191 SYGQERRCHLM 201
>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp
(State 1)
Length = 171
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 82/165 (49%), Gaps = 17/165 (10%)
Query: 18 KTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDT 77
K+ L I ++ F + Y PT+ ++Y + +D + L + DTAGQE+Y +R
Sbjct: 21 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 80
Query: 78 DVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDPNTIKELNKMK 135
+ L F+I++ S E+I ++ ++K +VP++LVGNK DL
Sbjct: 81 EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL-------------A 126
Query: 136 QEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
V+ + + +A+ Y+E SAK+++GV + F T R Q
Sbjct: 127 ARTVESRQAQDLARSY-GIPYIETSAKTRQGVEDAFYTLVREIRQ 170
>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp
(State 1)
Length = 171
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 82/165 (49%), Gaps = 17/165 (10%)
Query: 18 KTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDT 77
K+ L I ++ F + Y PT+ ++Y + +D + L + DTAGQE+Y +R
Sbjct: 21 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 80
Query: 78 DVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDPNTIKELNKMK 135
+ L F+I++ S E+I ++ ++K +VP++LVGNK DL
Sbjct: 81 EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL-------------A 126
Query: 136 QEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
V+ + + +A+ Y+E SAK+++GV + F T R Q
Sbjct: 127 ARTVESRQAQDLARSY-GIPYIETSAKTRQGVEDAFYTLVREIRQ 170
>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IF0|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 200
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 82/180 (45%), Gaps = 27/180 (15%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV----------FENYVAD-IEVDSKQVEL 55
KL+ +GD GKT L ++ ++F ++ TV ++ AD + +V L
Sbjct: 13 KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHL 72
Query: 56 ALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK--HFCPNVPII 113
LWDTAG E + L + D L+ F + S S N+ W +++ +C N I+
Sbjct: 73 QLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNV-RNWMSQLQANAYCENPDIV 131
Query: 114 LVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFET 173
L+GNK DL P+ Q V + R +A+K Y E SA + + V + ET
Sbjct: 132 LIGNKADL---PD---------QREVNERQARELAEKY-GIPYFETSAATGQNVEKSVET 178
>pdb|1WQ1|R Chain R, Ras-Rasgap Complex
pdb|1BKD|R Chain R, Complex Of Human H-Ras With Human Sos-1
pdb|1CTQ|A Chain A, Structure Of P21ras In Complex With Gppnhp At 100 K
pdb|1QRA|A Chain A, Structure Of P21ras In Complex With Gtp At 100 K
pdb|1K8R|A Chain A, Crystal Structure Of Ras-Bry2rbd Complex
pdb|1NVV|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1P2S|A Chain A, H-Ras 166 In 50% 2,2,2 Triflouroethanol
pdb|1P2T|A Chain A, H-Ras 166 In Aqueous Mother Liqour, Rt
pdb|1P2U|A Chain A, H-Ras In 50% Isopropanol
pdb|1P2V|A Chain A, H-Ras 166 In 60 % 1,6 Hexanediol
pdb|1XD2|B Chain B, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
pdb|121P|A Chain A, Struktur Und Guanosintriphosphat-Hydrolysemechanismus Des
C- Terminal Verkuerzten Menschlichen Krebsproteins
P21-H-Ras
pdb|1CRP|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRQ|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRR|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1GNP|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNQ|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNR|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|5P21|A Chain A, Refined Crystal Structure Of The Triphosphate Conformation
Of H-Ras P21 At 1.35 Angstroms Resolution: Implications
For The Mechanism Of Gtp Hydrolysis
pdb|2RGE|A Chain A, Crystal Structure Of H-Ras-Gppnhp
pdb|3K8Y|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3LBH|A Chain A, Ras Soaked In Calcium Acetate
pdb|3LBI|A Chain A, Ras Soaked In Magnesium Acetate And Back Soaked In Calcium
A
pdb|3LBN|A Chain A, Ras Soaked In Magnesium Acetate
pdb|3KUD|A Chain A, Complex Of Ras-Gdp With Rafrbd(A85k)
pdb|3L8Y|A Chain A, Complex Of Ras With Cyclen
pdb|3L8Z|A Chain A, H-Ras Wildtype New Crystal Form
pdb|3RRY|A Chain A, H-Ras Crosslinked Control, Soaked In Aqueous Solution: One
Of 10 In Mscs Set
pdb|3RRZ|A Chain A, H-Ras In 70% Glycerol: One Of 10 In Mscs Set
pdb|3RS0|A Chain A, H-Ras Soaked In Neat Cyclopentanol: One Of 10 In Mscs Set
pdb|3RS2|A Chain A, H-Ras Soaked In 50% 2,2,2-Trifluoroethanol: One Of 10 In
Mscs Set
pdb|3RS3|A Chain A, H-Ras Soaked In Neat Hexane: 1 Of 10 In Mscs Set
pdb|3RS4|A Chain A, H-Ras Soaked In 60% 1,6-Hexanediol: 1 Of 10 In Mscs Set
pdb|3RS5|A Chain A, H-Ras Soaked In 55% Dimethylformamide: 1 Of 10 In Mscs Set
pdb|3RS7|A Chain A, H-Ras Soaked In 50% Isopropanol: 1 Of 10 In Mscs Set
pdb|3RSL|A Chain A, H-Ras Soaked In 90% R,S,R-Bisfuranol: One Of 10 In Mscs
Set
pdb|3RSO|A Chain A, H-Ras Soaked In 20% S,R,S-Bisfuranol: 1 Of 10 In Mscs Set
pdb|3TGP|A Chain A, Room Temperature H-Ras
pdb|4DLS|A Chain A, H-Ras Set 1 Cacl2 'mixed'
pdb|4DLT|A Chain A, H-Ras Set 2 Ca(Oac)2, On
pdb|4DLU|A Chain A, H-Ras Set 1 Ca(Oac)2, On
pdb|4DLW|A Chain A, H-Ras Set 2 Ca(Oac)2DTT, ON
Length = 166
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 82/165 (49%), Gaps = 17/165 (10%)
Query: 18 KTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDT 77
K+ L I ++ F + Y PT+ ++Y + +D + L + DTAGQE+Y +R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 78 DVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDPNTIKELNKMK 135
+ L F+I++ S E+I ++ ++K +VP++LVGNK DL
Sbjct: 76 EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL-------------A 121
Query: 136 QEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
V+ + + +A+ Y+E SAK+++GV + F T R Q
Sbjct: 122 ARTVESRQAQDLARSY-GIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1HE8|B Chain B, Ras G12v-Pi 3-Kinase Gamma Complex
pdb|2UZI|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv Complex
pdb|2VH5|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv (Disulfide
Free Mutant) Complex
pdb|3OIV|A Chain A, H-Rasg12v With Allosteric Switch In The "off" State
pdb|3OIW|A Chain A, H-Rasg12v With Allosteric Switch In The "on" State
Length = 166
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 82/165 (49%), Gaps = 17/165 (10%)
Query: 18 KTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDT 77
K+ L I ++ F + Y PT+ ++Y + +D + L + DTAGQE+Y +R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 78 DVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDPNTIKELNKMK 135
+ L F+I++ S E+I ++ ++K +VP++LVGNK DL
Sbjct: 76 EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL-------------A 121
Query: 136 QEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
V+ + + +A+ Y+E SAK+++GV + F T R Q
Sbjct: 122 ARTVESRQAQDLARSY-GIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33
Gtpase Bound To Gdp And Alf3
Length = 198
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 68/121 (56%), Gaps = 5/121 (4%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVAD-IEVDSKQVELALWDTAGQED 65
K++++GD GKTCL F +FP+ T+ ++ +++D +++++ LWDTAGQE
Sbjct: 31 KIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQER 90
Query: 66 YDR-LRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPN-VPIILVGNKKDLR 122
+ + + Y + ++ + + S ++P W E K H N +P ILVGNK DLR
Sbjct: 91 FRKSMVQHYYRNVHAVVFVYDXTNXASFHSLP-AWIEECKQHLLANDIPRILVGNKCDLR 149
Query: 123 N 123
+
Sbjct: 150 S 150
>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ4|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ5|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ5|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ6|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf1 Complex
pdb|3GJ7|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ7|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ8|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
pdb|3GJ8|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
Length = 221
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 2/121 (1%)
Query: 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDSKQVELALWDTAG 62
++ KLV+VGDG GKT + + + YV T+ E + + ++ +WDTAG
Sbjct: 14 VQFKLVLVGDGGTGKTTFVKRHLTGESEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAG 73
Query: 63 QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLR 122
QE + LR Y ++ F + S + +N+P W ++ C N+PI+L GNK D++
Sbjct: 74 QEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP-NWHRDLVRVCENIPIVLCGNKVDIK 132
Query: 123 N 123
+
Sbjct: 133 D 133
>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|H Chain H, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|I Chain I, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 220
Score = 68.9 bits (167), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 82/180 (45%), Gaps = 27/180 (15%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV----------FENYVAD-IEVDSKQVEL 55
KL+ +GD GKT L ++ ++F ++ TV ++ AD + +V L
Sbjct: 13 KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHL 72
Query: 56 ALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK--HFCPNVPII 113
LWDTAG E + L + D L+ F + S S N+ W +++ +C N I+
Sbjct: 73 QLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNV-RNWMSQLQANAYCENPDIV 131
Query: 114 LVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFET 173
L+GNK DL P+ Q V + R +A+K Y E SA + + V + ET
Sbjct: 132 LIGNKADL---PD---------QREVNERQARELAEKY-GIPYFETSAATGQNVEKSVET 178
>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|C Chain C, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|E Chain E, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
Length = 166
Score = 68.9 bits (167), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 81/165 (49%), Gaps = 17/165 (10%)
Query: 18 KTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDT 77
K L I ++ F + Y PT+ ++Y + +D + L + DTAGQE+Y +R
Sbjct: 16 KNALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 78 DVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDPNTIKELNKMK 135
+ L F+I++ S E+I ++ ++K +VP++LVGNK DL
Sbjct: 76 EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL-------------A 121
Query: 136 QEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
V+ + + +A+ Y+E SAK+++GV + F T R Q
Sbjct: 122 ARTVESRQAQDLARSY-GIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant
Length = 167
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 82/167 (49%), Gaps = 17/167 (10%)
Query: 18 KTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDT 77
K+ L I ++ F + Y PT+ ++Y + +D + L + DTA QE+Y +R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAAQEEYSAMRDQYMRTG 75
Query: 78 DVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDPNTIKELNKMK 135
+ L F+I++ S E+I ++ ++K +VP++LVGNK DL
Sbjct: 76 EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKXDL-------------A 121
Query: 136 QEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVK 182
V+ + + +A+ Y+E SAK+++GV + F T R Q K
Sbjct: 122 ARTVESRQAQDLARSY-GIPYIETSAKTRQGVEDAFYTLVREIRQHK 167
>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF
pdb|4DLR|A Chain A, H-Ras Peg 400CA(OAC)2, ORDERED OFF
pdb|4DLV|A Chain A, H-Ras Set 2 Cacl2DTT, ORDERED OFF
pdb|4DLX|A Chain A, H-Ras Set 1 Cacl2DTE, ORDERED OFF
pdb|4DLY|A Chain A, Set 1 Cacl2DTT, ORDERED OFF
pdb|4DLZ|A Chain A, H-Ras Set 2 Ca(Oac)2DTE, ORDERED OFF
Length = 166
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 82/165 (49%), Gaps = 17/165 (10%)
Query: 18 KTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDT 77
K+ L I ++ F + Y PT+ ++Y + +D + L + DTAGQE+Y +R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDEYMRTG 75
Query: 78 DVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDPNTIKELNKMK 135
+ L F+I++ S E+I ++ ++K +VP++LVGNK DL
Sbjct: 76 EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL-------------A 121
Query: 136 QEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
V+ + + +A+ Y+E SAK+++GV + F T R Q
Sbjct: 122 ARTVESRQAQDLARSY-GIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 81/161 (50%), Gaps = 17/161 (10%)
Query: 18 KTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDT 77
K+ L I ++ F + Y PT+ ++Y + +D + L + DTAGQE+Y +R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 78 DVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDPNTIKELNKMK 135
+ L F+I++ S E+I ++ ++K +VP++LVGNK DL
Sbjct: 76 EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL-------------A 121
Query: 136 QEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATR 176
V+ + + +A+ Y+E SAK+++GV + F T R
Sbjct: 122 ARTVESRQAQDLARSY-GIPYIETSAKTRQGVEDAFYTLVR 161
>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPY|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 86/169 (50%), Gaps = 17/169 (10%)
Query: 18 KTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDT 77
K+ L I ++ F + Y PT+ ++Y + +D + L + DTAGQE+Y +R
Sbjct: 17 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 76
Query: 78 DVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDPNTIKELNKMK 135
+ L F+I++ S E+I + ++K +VP++LVGNK DL P+
Sbjct: 77 EGFLCVFAINNTKSFEDI-HHYREQIKRVKDSEDVPMVLVGNKSDL---PS--------- 123
Query: 136 QEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVKKK 184
V ++ + +A+ ++E SAK+++GV + F T R + K+K
Sbjct: 124 -RTVDTKQAQDLARSY-GIPFIETSAKTRQGVDDAFYTLVREIRKHKEK 170
>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPV|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPW|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 86/169 (50%), Gaps = 17/169 (10%)
Query: 18 KTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDT 77
K+ L I ++ F + Y PT+ ++Y + +D + L + DTAGQE+Y +R
Sbjct: 17 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 76
Query: 78 DVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDPNTIKELNKMK 135
+ L F+I++ S E+I + ++K +VP++LVGNK DL P+
Sbjct: 77 EGFLCVFAINNTKSFEDI-HHYREQIKRVKDSEDVPMVLVGNKSDL---PS--------- 123
Query: 136 QEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVKKK 184
V ++ + +A+ ++E SAK+++GV + F T R + K+K
Sbjct: 124 -RTVDTKQAQDLARSY-GIPFIETSAKTRQGVDDAFYTLVREIRKHKEK 170
>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 82/165 (49%), Gaps = 17/165 (10%)
Query: 18 KTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDT 77
K+ L I ++ F + Y PT+ ++Y + +D + L + DTAGQE+Y +R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 78 DVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDPNTIKELNKMK 135
+ L F+I++ S E+I ++ ++K +VP++LVGN+ DL
Sbjct: 76 EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNRCDL-------------A 121
Query: 136 QEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
V+ + + +A+ Y+E SAK+++GV + F T R Q
Sbjct: 122 ARTVESRQAQDLARSY-GIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By
Isoleucine
Length = 166
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 82/165 (49%), Gaps = 17/165 (10%)
Query: 18 KTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDT 77
K+ L I ++ F + Y PT+ ++Y + +D + L + DTAGQE+Y +R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGEICLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 78 DVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDPNTIKELNKMK 135
+ L F+I++ S E+I ++ ++K +VP++LVGNK DL
Sbjct: 76 EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL-------------A 121
Query: 136 QEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
V+ + + +A+ Y+E SAK+++GV + F T R Q
Sbjct: 122 ARTVESRQAQDLARSY-GIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp
pdb|3RWO|B Chain B, Crystal Structure Of Ypt32 In Complex With Gdp
pdb|3RWO|A Chain A, Crystal Structure Of Ypt32 In Complex With Gdp
Length = 185
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 82/182 (45%), Gaps = 16/182 (8%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDSKQVELALWDTAGQED 65
K+V++GD GK+ LL F+ D+F T+ E IEV++K+++ +WDTAG E
Sbjct: 12 KIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWDTAGLER 71
Query: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRND 124
Y + Y L+ + I S EN W E++ NV + L+GNK DL +
Sbjct: 72 YRAITSAYYRGAVGALIVYDISKSSSYENCNH-WLTELRENADDNVAVGLIGNKSDLAH- 129
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVKKK 184
++ P + AM N + E SA + + V + F A Q+ K
Sbjct: 130 ---------LRAVPTDEAKNFAME---NQMLFTETSALNSDNVDKAFRELIVAIFQMVSK 177
Query: 185 KK 186
+
Sbjct: 178 HQ 179
>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|3KKN|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|2LCF|A Chain A, Solution Structure Of Gppnhp-Bound H-Rast35s Mutant
Protein
Length = 172
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 82/165 (49%), Gaps = 17/165 (10%)
Query: 18 KTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDT 77
K+ L I ++ F + Y P++ ++Y + +D + L + DTAGQE+Y +R
Sbjct: 22 KSALTIQLIQNHFVDEYDPSIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 81
Query: 78 DVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDPNTIKELNKMK 135
+ L F+I++ S E+I ++ ++K +VP++LVGNK DL
Sbjct: 82 EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL-------------A 127
Query: 136 QEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
V+ + + +A+ Y+E SAK+++GV + F T R Q
Sbjct: 128 ARTVESRQAQDLARSY-GIPYIETSAKTRQGVEDAFYTLVREIRQ 171
>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form
pdb|1LF5|A Chain A, Crystal Structure Of Rasa59g In The Gdp-Bound Form
pdb|1NVU|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVU|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
Length = 166
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 81/165 (49%), Gaps = 17/165 (10%)
Query: 18 KTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDT 77
K+ L I ++ F + Y PT+ ++Y + +D + L + DT GQE+Y +R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTGGQEEYSAMRDQYMRTG 75
Query: 78 DVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDPNTIKELNKMK 135
+ L F+I++ S E+I ++ ++K +VP++LVGNK DL
Sbjct: 76 EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL-------------A 121
Query: 136 QEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
V+ + + +A+ Y+E SAK+++GV + F T R Q
Sbjct: 122 ARTVESRQAQDLARSY-GIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a
Mutant
Length = 166
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 81/165 (49%), Gaps = 17/165 (10%)
Query: 18 KTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDT 77
K+ L I ++ F + Y PT+ ++Y + +D + L + DTA QE+Y +R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAAQEEYSAMRDQYMRTG 75
Query: 78 DVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDPNTIKELNKMK 135
+ L F+I++ S E+I ++ ++K +VP++LVGNK DL
Sbjct: 76 EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKXDL-------------A 121
Query: 136 QEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
V+ + + +A+ Y+E SAK+++GV + F T R Q
Sbjct: 122 ARTVESRQAQDLARSY-GIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
pdb|2ERY|B Chain B, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
Length = 172
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 75/161 (46%), Gaps = 16/161 (9%)
Query: 18 KTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDT 77
K+ L I F + F Y PT+ ++Y +D + L + DTAGQE++ +R
Sbjct: 18 KSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTG 77
Query: 78 DVILMCFSIDSPDSLENIP--EKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMK 135
+ L+ FS+ S E I ++ VK P+IL+GNK DL +
Sbjct: 78 EGFLLVFSVTDRGSFEEIYKFQRQILRVKD-RDEFPMILIGNKADLDH------------ 124
Query: 136 QEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATR 176
Q V EEG+ +A+++ Y+E SAK + V + F R
Sbjct: 125 QRQVTQEEGQQLARQLKV-TYMEASAKIRMNVDQAFHELVR 164
>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|B Chain B, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|C Chain C, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
Length = 166
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 82/165 (49%), Gaps = 17/165 (10%)
Query: 18 KTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDT 77
K+ L I ++ F + Y P++ ++Y + +D + L + DTAGQE+Y +R
Sbjct: 16 KSALTIQLIQNHFVDEYDPSIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 78 DVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDPNTIKELNKMK 135
+ L F+I++ S E+I ++ ++K +VP++LVGNK DL
Sbjct: 76 EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL-------------A 121
Query: 136 QEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
V+ + + +A+ Y+E SAK+++GV + F T R Q
Sbjct: 122 ARTVESRQAQDLARSY-GIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|B Chain B, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|C Chain C, Allosteric Modulation Of H-Ras Gtpase
Length = 166
Score = 67.8 bits (164), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 82/165 (49%), Gaps = 17/165 (10%)
Query: 18 KTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDT 77
K+ L I ++ F + + PT+ ++Y + +D + L + DTAGQE+Y +R
Sbjct: 16 KSALTIQLIQNHFVDEFDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 78 DVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDPNTIKELNKMK 135
+ L F+I++ S E+I ++ ++K +VP++LVGNK DL
Sbjct: 76 EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL-------------A 121
Query: 136 QEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
V+ + + +A+ Y+E SAK+++GV + F T R Q
Sbjct: 122 ARTVESRQAQDLARSY-GIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 67.8 bits (164), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 81/165 (49%), Gaps = 17/165 (10%)
Query: 18 KTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDT 77
K+ L I ++ F + Y PT+ ++Y + +D + L + DTAG E+Y +R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGHEEYSAMRDQYMRTG 75
Query: 78 DVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDPNTIKELNKMK 135
+ L F+I++ S E+I ++ ++K +VP++LVGNK DL
Sbjct: 76 EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL-------------A 121
Query: 136 QEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
V+ + + +A+ Y+E SAK+++GV + F T R Q
Sbjct: 122 ARTVESRQAQDLARSY-GIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 67.8 bits (164), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 81/165 (49%), Gaps = 17/165 (10%)
Query: 18 KTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDT 77
K+ L I ++ F + Y PT+ ++Y + +D + L + DT GQE+Y +R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTTGQEEYSAMRDQYMRTG 75
Query: 78 DVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDPNTIKELNKMK 135
+ L F+I++ S E+I ++ ++K +VP++LVGNK DL
Sbjct: 76 EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL-------------A 121
Query: 136 QEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
V+ + + +A+ Y+E SAK+++GV + F T R Q
Sbjct: 122 ARTVESRQAQDLARSY-GIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp
Length = 166
Score = 67.8 bits (164), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 82/165 (49%), Gaps = 17/165 (10%)
Query: 18 KTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDT 77
K+ L I ++ F + Y PT+ ++Y + +D + L + DTAG+E+Y +R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGKEEYSAMRDQYMRTG 75
Query: 78 DVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDPNTIKELNKMK 135
+ L F+I++ S E+I ++ ++K +VP++LVGNK DL
Sbjct: 76 EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL-------------A 121
Query: 136 QEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
V+ + + +A+ Y+E SAK+++GV + F T R Q
Sbjct: 122 ARTVESRQAQDLARSY-GIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp
Length = 190
Score = 67.4 bits (163), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 83/170 (48%), Gaps = 17/170 (10%)
Query: 18 KTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDT 77
K+ L I ++ F + Y PT+ ++Y + +D + L + DTAGQE+Y +R
Sbjct: 34 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 93
Query: 78 DVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDPNTIKELNKMK 135
+ L F+I++ S +I + ++K +VP++LVGNK DL K+ +++
Sbjct: 94 EGFLCVFAINNSKSFADI-NLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELA 152
Query: 136 QEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVKKKK 185
+ P ++E SAK+++GV + F T R Q + KK
Sbjct: 153 KSYGIP--------------FIETSAKTRQGVEDAFYTLVREIRQYRMKK 188
>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
pdb|3TSO|B Chain B, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
Length = 178
Score = 67.4 bits (163), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 75/169 (44%), Gaps = 16/169 (9%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDSKQVELALWDTAGQED 65
K+V++G+ GKT LL F++++F T+ E + + + V+ +WDTAG E
Sbjct: 12 KVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLER 71
Query: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRND 124
Y + Y L+ F + + + E+W E+ H + ++LVGNK DL
Sbjct: 72 YRAITSAYYRGAVGALLVFDLTKHQTYA-VVERWLKELYDHAEATIVVMLVGNKSDLS-- 128
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFET 173
+ V EE R A+ N +LE SA V FET
Sbjct: 129 ----------QAREVPTEEARMFAEN-NGLLFLETSALDSTNVELAFET 166
>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp
Length = 193
Score = 67.4 bits (163), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 75/169 (44%), Gaps = 16/169 (9%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDSKQVELALWDTAGQED 65
K+V++G+ GKT LL F++++F T+ E + + + V+ +WDTAG E
Sbjct: 27 KVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLER 86
Query: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRND 124
Y + Y L+ F + + + E+W E+ H + ++LVGNK DL
Sbjct: 87 YRAITSAYYRGAVGALLVFDLTKHQTYA-VVERWLKELYDHAEATIVVMLVGNKSDLS-- 143
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFET 173
+ V EE R A+ N +LE SA V FET
Sbjct: 144 ----------QAREVPTEEARMFAEN-NGLLFLETSALDSTNVELAFET 181
>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g
Length = 166
Score = 67.0 bits (162), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 81/165 (49%), Gaps = 17/165 (10%)
Query: 18 KTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDT 77
K+ L I ++ F + Y PT+ ++Y + +D + L + DTAG E+Y +R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETXLLDILDTAGGEEYSAMRDQYMRTG 75
Query: 78 DVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDPNTIKELNKMK 135
+ L F+I++ S E+I ++ ++K +VP++LVGNK DL
Sbjct: 76 EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL-------------A 121
Query: 136 QEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
V+ + + +A+ Y+E SAK+++GV + F T R Q
Sbjct: 122 ARTVESRQAQDLARSY-GIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form
Length = 166
Score = 67.0 bits (162), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 81/165 (49%), Gaps = 17/165 (10%)
Query: 18 KTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDT 77
K+ L I ++ F + Y PT+ ++Y + +D + L + DTAG E+Y +R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGGEEYSAMRDQYMRTG 75
Query: 78 DVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDPNTIKELNKMK 135
+ L F+I++ S E+I ++ ++K +VP++LVGNK DL
Sbjct: 76 EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL-------------A 121
Query: 136 QEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
V+ + + +A+ Y+E SAK+++GV + F T R Q
Sbjct: 122 ARTVESRQAQDLARSY-GIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gppnhp
pdb|2CL6|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With S-Caged Gtp
pdb|2CL7|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp
pdb|2CLC|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp (2)
pdb|2EVW|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With R-Caged Gtp
pdb|2CE2|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp
Length = 166
Score = 66.6 bits (161), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 81/165 (49%), Gaps = 17/165 (10%)
Query: 18 KTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDT 77
K+ L I ++ F + PT+ ++Y + +D + L + DTAGQE+Y +R
Sbjct: 16 KSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 78 DVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDPNTIKELNKMK 135
+ L F+I++ S E+I ++ ++K +VP++LVGNK DL
Sbjct: 76 EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKSDL-------------A 121
Query: 136 QEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
V+ + + +A+ Y+E SAK+++GV + F T R Q
Sbjct: 122 ARTVESRQAQDLARSY-GIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp
(State 1)
Length = 171
Score = 66.6 bits (161), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 81/165 (49%), Gaps = 17/165 (10%)
Query: 18 KTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDT 77
K+ L I ++ F + Y PT+ ++Y + +D + L + DTAG E+Y +R
Sbjct: 21 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGLEEYSAMRDQYMRTG 80
Query: 78 DVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDPNTIKELNKMK 135
+ L F+I++ S E+I ++ ++K +VP++LVGNK DL
Sbjct: 81 EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL-------------A 126
Query: 136 QEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
V+ + + +A+ Y+E SAK+++GV + F T R Q
Sbjct: 127 ARTVESRQAQDLARSY-GIPYIETSAKTRQGVEDAFYTLVREIRQ 170
>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
pdb|2RGD|A Chain A, Crystal Structure Of H-Rasq61l-Gppnhp
pdb|3OIU|A Chain A, H-Rasq61l With Allosteric Switch In The "on" State
Length = 166
Score = 66.2 bits (160), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 81/165 (49%), Gaps = 17/165 (10%)
Query: 18 KTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDT 77
K+ L I ++ F + Y PT+ ++Y + +D + L + DTAG E+Y +R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGLEEYSAMRDQYMRTG 75
Query: 78 DVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDPNTIKELNKMK 135
+ L F+I++ S E+I ++ ++K +VP++LVGNK DL
Sbjct: 76 EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL-------------A 121
Query: 136 QEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
V+ + + +A+ Y+E SAK+++GV + F T R Q
Sbjct: 122 ARTVESRQAQDLARSY-GIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp
Length = 166
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 81/165 (49%), Gaps = 17/165 (10%)
Query: 18 KTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDT 77
K+ L I ++ F + Y PT+ ++Y + +D + L + DTAG E+Y +R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGVEEYSAMRDQYMRTG 75
Query: 78 DVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDPNTIKELNKMK 135
+ L F+I++ S E+I ++ ++K +VP++LVGNK DL
Sbjct: 76 EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL-------------A 121
Query: 136 QEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
V+ + + +A+ Y+E SAK+++GV + F T R Q
Sbjct: 122 ARTVESRQAQDLARSY-GIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp
pdb|2RGG|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp, Trigonal Crystal
Form
Length = 166
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 81/165 (49%), Gaps = 17/165 (10%)
Query: 18 KTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDT 77
K+ L I ++ F + Y PT+ ++Y + +D + L + DTAG E+Y +R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGIEEYSAMRDQYMRTG 75
Query: 78 DVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDPNTIKELNKMK 135
+ L F+I++ S E+I ++ ++K +VP++LVGNK DL
Sbjct: 76 EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL-------------A 121
Query: 136 QEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
V+ + + +A+ Y+E SAK+++GV + F T R Q
Sbjct: 122 ARTVESRQAQDLARSY-GIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1XD2|A Chain A, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
Length = 166
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 81/165 (49%), Gaps = 17/165 (10%)
Query: 18 KTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDT 77
K+ L I ++ F + Y PT+ ++Y + +D + L + DTAGQE+ +R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEASAMRDQYMRTG 75
Query: 78 DVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDPNTIKELNKMK 135
+ L F+I++ S E+I ++ ++K +VP++LVGNK DL
Sbjct: 76 EGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDL-------------A 121
Query: 136 QEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
V+ + + +A+ Y+E SAK+++GV + F T R Q
Sbjct: 122 ARTVESRQAQDLARSY-GIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|B Chain B, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|C Chain C, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|D Chain D, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|E Chain E, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|F Chain F, Human K-Ras In Complex With A Gtp Analogue
Length = 187
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 85/169 (50%), Gaps = 17/169 (10%)
Query: 18 KTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDT 77
K+ L I ++ F + Y PT+ ++Y + +D + L + DTAG E+Y +R
Sbjct: 34 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGHEEYSAMRDQYMRTG 93
Query: 78 DVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDPNTIKELNKMK 135
+ L F+I++ S E+I + ++K +VP++LVGNK DL P+
Sbjct: 94 EGFLCVFAINNTKSFEDI-HHYREQIKRVKDSEDVPMVLVGNKCDL---PS--------- 140
Query: 136 QEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVKKK 184
V ++ + +A+ ++E SAK+++GV + F T R + K+K
Sbjct: 141 -RTVDTKQAQDLARSY-GIPFIETSAKTRQGVDDAFYTLVREIRKHKEK 187
>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a
pdb|3BC1|E Chain E, Crystal Structure Of The Complex Rab27a-slp2a
Length = 195
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 76/179 (42%), Gaps = 27/179 (15%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA----------DIEVDSKQ-VEL 55
K + +GD GKT +L ++ +F ++ TV ++ D V Q + L
Sbjct: 13 KFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHL 72
Query: 56 ALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKH--FCPNVPII 113
LWDTAG E + L + D L+ F + + S N+ W +++ + N I+
Sbjct: 73 QLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNV-RNWISQLQMHAYSENPDIV 131
Query: 114 LVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFE 172
L GNK DL + Q VK EE R +A+K Y E SA + + E
Sbjct: 132 LCGNKSDLED------------QRAVKEEEARELAEKY-GIPYFETSAANGTNISHAIE 177
>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|3RAP|S Chain S, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|1KAO|A Chain A, Crystal Structure Of The Small G Protein Rap2a With Gdp
pdb|2RAP|A Chain A, The Small G Protein Rap2a In Complex With Gtp
Length = 167
Score = 64.3 bits (155), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 78/161 (48%), Gaps = 16/161 (9%)
Query: 18 KTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDT 77
K+ L + F F E Y PT+ + Y +IEVDS L + DTAG E + +R L +
Sbjct: 16 KSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNG 75
Query: 78 DVILMCFSIDSPDSLENIP--EKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMK 135
++ +S+ + S ++I VK + VP+ILVGNK DL ++
Sbjct: 76 QGFILVYSLVNQQSFQDIKPMRDQIIRVKRY-EKVPVILVGNKVDLESEREV-------- 126
Query: 136 QEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATR 176
EGRA+A++ ++E SAKSK V E+F R
Sbjct: 127 ----SSSEGRALAEEWGC-PFMETSAKSKTMVDELFAEIVR 162
>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp
Length = 195
Score = 63.9 bits (154), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 79/174 (45%), Gaps = 18/174 (10%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFEN-YVADIEVDSKQVELALWDTAGQED 65
K+++VG+ GK+ L F Q + P E+ Y I VD ++V L ++D Q D
Sbjct: 25 KVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGD 84
Query: 66 YDR-LRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN--VPIILVGNKKDLR 122
LR D L+ FS+ S +PE ++ P+ +P+ILVGNK DL
Sbjct: 85 AGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLL-RLRAGRPHHDLPVILVGNKSDL- 142
Query: 123 NDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATR 176
+ V EEGR +A ++ ++E SA RE+FE A R
Sbjct: 143 -----------ARSREVSLEEGRHLAGTLSC-KHIETSAALHHNTRELFEGAVR 184
>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State
Length = 196
Score = 63.9 bits (154), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 80/168 (47%), Gaps = 18/168 (10%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQED- 65
KL I G GK+ L++ F +F Y PT+ Y +D + V + + DTAGQED
Sbjct: 30 KLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQEDT 89
Query: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENI-PEKWTPEVKHFCPNVPIILVGNKKDLRND 124
R + + + V++ + I S E + P K + NV +ILVGNK DL +
Sbjct: 90 IQREGHMRWGEGFVLV--YDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDH- 146
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEG-VREVF 171
V EEG +A ++ A A+ ECSA + EG + E+F
Sbjct: 147 -----------SRQVSTEEGEKLATEL-ACAFYECSACTGEGNITEIF 182
>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase
Length = 169
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 87/172 (50%), Gaps = 16/172 (9%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDSKQVELALWDTAGQED 65
K+ ++GD GK+ ++ F +D F PT+ +++ ++ ++ + +WDTAGQE
Sbjct: 7 KVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQER 66
Query: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 124
+ L P+ Y + ++ + I ++ + + W E++ H P++ + + GNK DL +
Sbjct: 67 FRALAPMYYRGSAAAIIVYDITKEETFSTL-KNWVRELRQHGPPSIVVAIAGNKCDLTD- 124
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATR 176
++E V + + A I+A ++E SAK+ + E+F +R
Sbjct: 125 ---VRE--------VMERDAKDYADSIHAI-FVETSAKNAININELFIEISR 164
>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras,
In The Gdp- Bound State
Length = 181
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 76/170 (44%), Gaps = 16/170 (9%)
Query: 18 KTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDT 77
K+ L I F + F Y PT+ ++Y VD L + DTAGQE++ +R
Sbjct: 22 KSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAG 81
Query: 78 DVILMCFSIDSPDSLENIPEKWTP--EVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMK 135
L+ F+I+ S + + +T VK + P++LVGNK DL +
Sbjct: 82 HGFLLVFAINDRQSFNEVGKLFTQILRVKD-RDDFPVVLVGNKADLES------------ 128
Query: 136 QEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVKKKK 185
Q V E A + AY E SAK + V E FE RA + ++++
Sbjct: 129 QRQVPRSEASAFGAS-HHVAYFEASAKLRLNVDEAFEQLVRAVRKYQEQE 177
>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive
(Gdp-3'p- Bound) Form
pdb|3E5H|A Chain A, Crystal Structure Of Rab28 Gtpase In The Active
(Gppnhp-Bound) Form
Length = 178
Score = 61.2 bits (147), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 84/185 (45%), Gaps = 20/185 (10%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEV-DSKQVELALWDTAGQE 64
K+V++GDGA GKT L F+++ F + Y T+ + ++ I + + V L +WD GQ
Sbjct: 8 KIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQT 67
Query: 65 DYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF---CPNVPII-LVGNKKD 120
++ +L+ + I + S EN+ E W VK P++ LVGNK D
Sbjct: 68 IGGKMLDKYIYGAQGVLLVYDITNYQSFENL-EDWYTVVKKVSEESETQPLVALVGNKID 126
Query: 121 LRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
L + +KPE+ Q+ N F+ SAK+ + V F+ L
Sbjct: 127 LEH------------MRTIKPEKHLRFCQE-NGFSSHFVSAKTGDSVFLCFQKVAAEILG 173
Query: 181 VKKKK 185
+K K
Sbjct: 174 IKLNK 178
>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With
The Minimal Rab Binding Domain Of Rabenosyn-5
Length = 170
Score = 60.8 bits (146), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 91/178 (51%), Gaps = 17/178 (9%)
Query: 2 AAIRK-KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDSKQVELALWD 59
+A+R+ K+ ++GD GK+ ++ F +D F PT+ +++ ++ ++ + +WD
Sbjct: 2 SALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWD 61
Query: 60 TAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNK 118
TAG E + L P+ Y + ++ + I ++ + + W E++ H P++ + + GNK
Sbjct: 62 TAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTL-KNWVRELRQHGPPSIVVAIAGNK 120
Query: 119 KDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATR 176
DL + ++E V + + A I+A ++E SAK+ + E+F +R
Sbjct: 121 CDLTD----VRE--------VMERDAKDYADSIHAI-FVETSAKNAININELFIEISR 165
>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp
pdb|3KKQ|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gdp
Length = 183
Score = 60.1 bits (144), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 72/147 (48%), Gaps = 16/147 (10%)
Query: 18 KTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDT 77
K+ L I F + F + Y PT+ ++Y+ E+D++ L + DTAGQE++ +R
Sbjct: 31 KSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTG 90
Query: 78 DVILMCFSIDSPDSLENIP--EKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMK 135
D L+ +S+ S E++ + VK + P+ILV NK DL M
Sbjct: 91 DGFLIVYSVTDKASFEHVDRFHQLILRVKD-RESFPMILVANKVDL------------MH 137
Query: 136 QEPVKPEEGRAMAQKINAFAYLECSAK 162
V ++G+ MA K N Y+E SAK
Sbjct: 138 LRKVTRDQGKEMATKYN-IPYIETSAK 163
>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
pdb|3Q85|B Chain B, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
Length = 169
Score = 59.7 bits (143), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 78/174 (44%), Gaps = 18/174 (10%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVY-VPTVFENYVADIEVDSKQVELALWDTAGQED 65
K+++VG+ GK+ L F Q + + + Y I VD ++V L ++D Q D
Sbjct: 4 KVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGD 63
Query: 66 YDR-LRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN--VPIILVGNKKDLR 122
L+ D L+ FS+ S +PE ++ P+ +P+ILVGNK DL
Sbjct: 64 AGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLL-RLRAGRPHHDLPVILVGNKSDL- 121
Query: 123 NDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATR 176
+ V EEGR +A ++ ++E SA RE+FE A R
Sbjct: 122 -----------ARSREVSLEEGRHLAGTLSC-KHIETSAALHHNTRELFEGAVR 163
>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|B Chain B, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|P Chain P, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
Length = 183
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 71/147 (48%), Gaps = 16/147 (10%)
Query: 18 KTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDT 77
K+ L I F + F + Y PT+ ++Y E+D++ L + DTAGQE++ +R
Sbjct: 31 KSALTIQFFQKIFVDEYDPTIEDSYRKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTG 90
Query: 78 DVILMCFSIDSPDSLENIP--EKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMK 135
D L+ +S+ S E++ + VK + P+ILV NK DL M
Sbjct: 91 DGFLIVYSVTDKASFEHVDRFHQLILRVKD-RESFPMILVANKVDL------------MH 137
Query: 136 QEPVKPEEGRAMAQKINAFAYLECSAK 162
V ++G+ MA K N Y+E SAK
Sbjct: 138 LRKVTRDQGKEMATKYN-IPYIETSAK 163
>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 1)
pdb|3PIT|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 2)
Length = 183
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 71/147 (48%), Gaps = 16/147 (10%)
Query: 18 KTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDT 77
K+ L I F + F Y PT+ ++Y+ E+D++ L + DTAGQE++ +R
Sbjct: 31 KSALTIQFFQKIFVPEYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTG 90
Query: 78 DVILMCFSIDSPDSLENIP--EKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMK 135
D L+ +S+ S E++ + VK + P+ILV NK DL M
Sbjct: 91 DGFLIVYSVTDKASFEHVDRFHQLILRVKD-RESFPMILVANKVDL------------MH 137
Query: 136 QEPVKPEEGRAMAQKINAFAYLECSAK 162
V ++G+ MA K N Y+E SAK
Sbjct: 138 LRKVTRDQGKEMATKYN-IPYIETSAK 163
>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp
pdb|1X1S|A Chain A, Crystal Structure Of M-ras In Complex With Gppnhp
Length = 178
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 71/147 (48%), Gaps = 16/147 (10%)
Query: 18 KTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDT 77
K+ L I F + F Y PT+ ++Y+ E+D++ L + DTAGQE++ +R
Sbjct: 26 KSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTG 85
Query: 78 DVILMCFSIDSPDSLENIP--EKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMK 135
D L+ +S+ S E++ + VK + P+ILV NK DL M
Sbjct: 86 DGFLIVYSVTDKASFEHVDRFHQLILRVKD-RESFPMILVANKVDL------------MH 132
Query: 136 QEPVKPEEGRAMAQKINAFAYLECSAK 162
V ++G+ MA K N Y+E SAK
Sbjct: 133 LRKVTRDQGKEMATKYN-IPYIETSAK 158
>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
pdb|4AII|B Chain B, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
Length = 180
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 78/174 (44%), Gaps = 18/174 (10%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVY-VPTVFENYVADIEVDSKQVELALWDTAGQED 65
K++++G+ GK+ L F Q + + + Y I VD ++V L ++D Q D
Sbjct: 14 KVMLLGESGVGKSTLAGTFGGLQGDNAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGD 73
Query: 66 YDR-LRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN--VPIILVGNKKDLR 122
L+ D L+ FS+ S +PE ++ P+ +P+ILVGNK DL
Sbjct: 74 AGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLL-RLRAGRPHHDLPVILVGNKSDL- 131
Query: 123 NDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATR 176
+ V EEGR +A ++ ++E SA RE+FE A R
Sbjct: 132 -----------ARSREVSLEEGRHLAGTLSC-KHIETSAALHHNTRELFEGAVR 173
>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum,
Pfb0500c
Length = 208
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/203 (22%), Positives = 81/203 (39%), Gaps = 54/203 (26%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV---FENYVADIEVDSK------------ 51
K V++G+ + GK+ +++ +KD F E T+ F YV ++ +
Sbjct: 9 KTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNI 68
Query: 52 -----------------------QVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDS 88
++ +WDTAGQE Y + PL Y ++ F I +
Sbjct: 69 NSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISN 128
Query: 89 PDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMA 148
++L+ + W ++K N IILV NK D I E+ K Q+
Sbjct: 129 SNTLDR-AKTWVNQLK-ISSNYIIILVANKIDKNKFQVDILEVQKYAQD----------- 175
Query: 149 QKINAFAYLECSAKSKEGVREVF 171
N +++ SAK+ ++ +F
Sbjct: 176 ---NNLLFIQTSAKTGTNIKNIF 195
>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 53.5 bits (127), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 82/192 (42%), Gaps = 22/192 (11%)
Query: 7 KLVIVGDGACGKTCLLIVF-----SKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTA 61
++V++G+ GK+ L +F S D EV +E + + + L +W+
Sbjct: 8 RVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENK 67
Query: 62 GQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPE-KWTPEVKHFCPNVPIILVGNKKD 120
G+ ++ L D L+ +SI S E E + ++PIILVGNK D
Sbjct: 68 GENEW--LHDHXMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSD 125
Query: 121 LRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAA-L 179
L ++ V EGRA A + ++E SA + V+E+FE R L
Sbjct: 126 L------------VRXREVSVSEGRAXAVVFDC-KFIETSAAVQHNVKELFEGIVRQVRL 172
Query: 180 QVKKKKKGRCRL 191
+ K+K RL
Sbjct: 173 RRDSKEKNERRL 184
>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
pdb|4DJT|B Chain B, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
Length = 218
Score = 53.5 bits (127), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 73/160 (45%), Gaps = 17/160 (10%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV--FENYVADIEVDSKQVELALWDTAGQE 64
K+ ++GDG GKT + +F + Y TV + V ++ ++ +WDTAGQE
Sbjct: 13 KICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQE 72
Query: 65 DYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN-VPIILVGNKKDLRN 123
L+ + Y ++ F + S + +N+ +W E + N PI++ NK D++N
Sbjct: 73 KKAVLKDVYYIGASGAILFFDVTSRITCQNLA-RWVKEFQAVVGNEAPIVVCANKIDIKN 131
Query: 124 DPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKS 163
K K+ E +K + + Y E SAK+
Sbjct: 132 RQKISK---KLVMEVLKGKN----------YEYFEISAKT 158
>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 53.1 bits (126), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 82/192 (42%), Gaps = 22/192 (11%)
Query: 7 KLVIVGDGACGKTCLLIVF-----SKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTA 61
++V++G+ GK+ L +F S D EV +E + + + L +W+
Sbjct: 8 RVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENK 67
Query: 62 GQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPE-KWTPEVKHFCPNVPIILVGNKKD 120
G+ ++ L D L+ +SI S E E + ++PIILVGNK D
Sbjct: 68 GENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSD 125
Query: 121 LRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAA-L 179
L ++ V EGRA A + ++E SA + V+E+FE R L
Sbjct: 126 L------------VRXREVSVSEGRAXAVVFDX-KFIETSAAVQHNVKELFEGIVRQVRL 172
Query: 180 QVKKKKKGRCRL 191
+ K+K RL
Sbjct: 173 RRDSKEKNERRL 184
>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|B Chain B, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|C Chain C, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|D Chain D, The Crystal Structure Of Rem1 In Complex With Gdp
Length = 175
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 75/169 (44%), Gaps = 16/169 (9%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
++V++GD GKT L +F+ Q +++ + Y + VD + L + DT E
Sbjct: 6 RVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKL 65
Query: 67 DR--LRPLSYPDTDVILMCFSIDSPDSLENIPE-KWTPEVKHFCPNVPIILVGNKKDLRN 123
D+ + ++ +SI S E+ E + H +VPIILVGNK DL
Sbjct: 66 DKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADL-- 123
Query: 124 DPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFE 172
+ V EEGRA A + ++E SA + V E+FE
Sbjct: 124 ----------ARCREVSVEEGRACAVVFDC-KFIETSATLQHNVAELFE 161
>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp
pdb|2HT6|B Chain B, Crystal Structure Of Human Gem G-Domain Bound To Gdp
Length = 174
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 80/185 (43%), Gaps = 24/185 (12%)
Query: 7 KLVIVGDGACGKTCLLIVF-----SKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTA 61
++V++G+ GK+ L +F S D EV +E + + + L +W+
Sbjct: 8 RVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENK 67
Query: 62 GQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPE-KWTPEVKHFCPNVPIILVGNKKD 120
G+ ++ L D L+ +SI S E E + ++PIILVGNK D
Sbjct: 68 GENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSD 125
Query: 121 LRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
L ++ V EGRA A + ++E SA + V+E+FE R Q
Sbjct: 126 L------------VRCREVSVSEGRACAVVFDC-KFIETSAAVQHNVKELFEGIVR---Q 169
Query: 181 VKKKK 185
V+ ++
Sbjct: 170 VRLRR 174
>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem
Length = 211
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 81/188 (43%), Gaps = 24/188 (12%)
Query: 7 KLVIVGDGACGKTCLLIVF-----SKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTA 61
++V++G+ GK+ L +F S D EV +E + + + L +W+
Sbjct: 39 RVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENK 98
Query: 62 GQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPE-KWTPEVKHFCPNVPIILVGNKKD 120
G+ ++ L D L+ +SI S E E + ++PIILVGNK D
Sbjct: 99 GENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSD 156
Query: 121 LRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQ 180
L ++ V EGRA A + ++E SA + V+E+FE R Q
Sbjct: 157 L------------VRCREVSVSEGRACAVVFDC-KFIETSAAVQHNVKELFEGIVR---Q 200
Query: 181 VKKKKKGR 188
V+ ++ +
Sbjct: 201 VRLRRDSK 208
>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c
Length = 186
Score = 47.0 bits (110), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 68/146 (46%), Gaps = 20/146 (13%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
+L +VG GKT + V + QF E +PTV N +V V + +WD GQ +
Sbjct: 24 ELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMR---KVTKGNVTIKIWDIGGQPRF 80
Query: 67 DRLRPLSYPDTDVILMCFSIDSPD---------SLENIPEKWTPEVKHFCPNVPIILVGN 117
+ + I+ + ID+ D L N+ +K P+++ +P++++GN
Sbjct: 81 RSMWERYCRGVNAIV--YMIDAADREKIEASRNELHNLLDK--PQLQ----GIPVLVLGN 132
Query: 118 KKDLRNDPNTIKELNKMKQEPVKPEE 143
K+DL N + + + KM ++ E
Sbjct: 133 KRDLPNALDEKQLIEKMNLSAIQDRE 158
>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q72|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7Q|A Chain A, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
pdb|3Q7Q|B Chain B, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
Length = 166
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 71/172 (41%), Gaps = 17/172 (9%)
Query: 7 KLVIVGDGACGKTCLLIVFSK-DQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQED 65
K++++G GK+ L +F + PE Y I VD ++ L ++D Q+
Sbjct: 4 KVLLLGAPGVGKSALARIFGGVEDGPEA--EAAGHTYDRSIVVDGEEASLMVYDIWEQDG 61
Query: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPE-KWTPEVKHFCPNVPIILVGNKKDLRND 124
L D ++ +S+ S E E + +VPIILVGNK DL
Sbjct: 62 GRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDL--- 118
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATR 176
++ V +EGRA A + ++E SA V+ +FE R
Sbjct: 119 ---------VRSREVSVDEGRACAVVFDC-KFIETSAALHHNVQALFEGVVR 160
>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase
pdb|2DPX|B Chain B, Crystal Structure Of Human Rad Gtpase
Length = 174
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 71/172 (41%), Gaps = 17/172 (9%)
Query: 7 KLVIVGDGACGKTCLLIVFSK-DQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQED 65
K++++G GK+ L +F + PE Y I VD ++ L ++D Q+
Sbjct: 9 KVLLLGAPGVGKSALARIFGGVEDGPEA--EAAGHTYDRSIVVDGEEASLMVYDIWEQDG 66
Query: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPE-KWTPEVKHFCPNVPIILVGNKKDLRND 124
L D ++ +S+ S E E + +VPIILVGNK DL
Sbjct: 67 GRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDL--- 123
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATR 176
++ V +EGRA A + ++E SA V+ +FE R
Sbjct: 124 ---------VRSREVSVDEGRACAVVFDC-KFIETSAALHHNVQALFEGVVR 165
>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp
pdb|2GJS|B Chain B, The Crystal Structure Of Human Rrad In Complex With Gdp
Length = 176
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 71/172 (41%), Gaps = 17/172 (9%)
Query: 7 KLVIVGDGACGKTCLLIVFSK-DQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQED 65
K++++G GK+ L +F + PE Y I VD ++ L ++D Q+
Sbjct: 9 KVLLLGAPGVGKSALARIFGGVEDGPEA--EAAGHTYDRSIVVDGEEASLMVYDIWEQDG 66
Query: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPE-KWTPEVKHFCPNVPIILVGNKKDLRND 124
L D ++ +S+ S E E + +VPIILVGNK DL
Sbjct: 67 GRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDL--- 123
Query: 125 PNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATR 176
++ V +EGRA A + ++E SA V+ +FE R
Sbjct: 124 ---------VRSREVSVDEGRACAVVFDC-KFIETSAALHHNVQALFEGVVR 165
>pdb|3C5C|A Chain A, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|B Chain B, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|C Chain C, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|D Chain D, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
Length = 187
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 74/176 (42%), Gaps = 20/176 (11%)
Query: 8 LVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYD 67
L I+G GK+ L + F +F Y P + + Y ++ VD + V L + DTA D D
Sbjct: 24 LAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTA---DLD 80
Query: 68 RLRPLS-YPD-TDVILMCFSIDSPDSLENIP---EKWTPEVKHFCPNVPIILVGNKKDLR 122
R Y + L+ +S+DS S ++ E K ++P +L+GNK D+
Sbjct: 81 TPRNCERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDM- 139
Query: 123 NDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAA 178
+ V EG A+A + + + E V+ VF A R A
Sbjct: 140 -----------AQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAVREA 184
>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
Length = 188
Score = 43.1 bits (100), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 66/146 (45%), Gaps = 20/146 (13%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
+L +VG GKT + V + QF E +PTV N ++ V + LWD GQ +
Sbjct: 24 ELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR---KITKGNVTIKLWDIGGQPRF 80
Query: 67 DRLRPLSYPDTDVILMCFSIDSPDS---------LENIPEKWTPEVKHFCPNVPIILVGN 117
+ I+ + +D+ D L N+ +K P+++ +P++++GN
Sbjct: 81 RSMWERYCRGVSAIV--YMVDAADQEKIEASKNELHNLLDK--PQLQ----GIPVLVLGN 132
Query: 118 KKDLRNDPNTIKELNKMKQEPVKPEE 143
K+DL + + + KM ++ E
Sbjct: 133 KRDLPGALDEKELIEKMNLSAIQDRE 158
>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
(Arl10b)
Length = 193
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 66/146 (45%), Gaps = 20/146 (13%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
+L +VG GKT + V + QF E +PTV N ++ V + LWD GQ +
Sbjct: 33 ELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR---KITKGNVTIKLWDIGGQPRF 89
Query: 67 DRLRPLSYPDTDVILMCFSIDSPDS---------LENIPEKWTPEVKHFCPNVPIILVGN 117
+ I+ + +D+ D L N+ +K P+++ +P++++GN
Sbjct: 90 RSMWERYCRGVSAIV--YMVDAADQEKIEASKNELHNLLDK--PQLQ----GIPVLVLGN 141
Query: 118 KKDLRNDPNTIKELNKMKQEPVKPEE 143
K+DL + + + KM ++ E
Sbjct: 142 KRDLPGALDEKELIEKMNLSAIQDRE 167
>pdb|2ZEJ|A Chain A, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
pdb|2ZEJ|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 184
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 57/126 (45%), Gaps = 6/126 (4%)
Query: 5 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VAD--IEVDSKQ---VELALW 58
R KL IVG+ GKT LL K + ++ + V D I++ K+ + L +W
Sbjct: 2 RXKLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVW 61
Query: 59 DTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNK 118
D AG+E++ P + L + + + + + W +K + P+ILVG
Sbjct: 62 DFAGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSSPVILVGTH 121
Query: 119 KDLRND 124
D+ ++
Sbjct: 122 LDVSDE 127
>pdb|2LKC|A Chain A, Free B.St If2-G2
pdb|2LKD|A Chain A, If2-G2 Gdp Complex
Length = 178
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 74/170 (43%), Gaps = 22/170 (12%)
Query: 8 LVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYD 67
+ I+G GKT LL + E + + ++ +V ++ DT G E +
Sbjct: 11 VTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQ-HIGAYQVTVNDKKITFLDTPGHEAFT 69
Query: 68 RLRPLSYPDTDVILMCFSIDS---PDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRND 124
+R TD++++ + D P ++E I NVPII+ NK D + +
Sbjct: 70 TMRARGAQVTDIVILVVAADDGVMPQTVEAINHAK-------AANVPIIVAINKMD-KPE 121
Query: 125 PNTIKELNKMKQEPVKPEE--GRAMAQKINAFAYLECSAKSKEGVREVFE 172
N + + ++ + + PEE G + + + SAK+KEG+ + E
Sbjct: 122 ANPDRVMQELMEYNLVPEEWGGDTI--------FCKLSAKTKEGLDHLLE 163
>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC2|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
Length = 208
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 62/129 (48%), Gaps = 10/129 (7%)
Query: 2 AAIRKKLVIVGDGACGKTCLLIVFSK--DQFPEVYVPTV-FENYVADIEV--DSKQVELA 56
A +R K+ +VG+ GK+ L+ +F+ +F + Y T E VA + + + VEL
Sbjct: 17 ATLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELF 76
Query: 57 LWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN----VPI 112
L DTAG + Y + ++ F + S +S E+ + W +K P+ +
Sbjct: 77 LLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESC-KAWFELLKSARPDRERPLRA 135
Query: 113 ILVGNKKDL 121
+LV NK DL
Sbjct: 136 VLVANKTDL 144
>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum
Adp-Ribosylation Factor 1
Length = 181
Score = 40.0 bits (92), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 78/175 (44%), Gaps = 25/175 (14%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVY--VPTVFENYVADIEVDSKQVELALWDTAGQE 64
++++VG A GKT +L K + EV +PT+ N V+ + + +WD GQ
Sbjct: 19 RILMVGLDAAGKTTILY---KVKLGEVVTTIPTIGFNVET---VEFRNISFTVWDVGGQ- 71
Query: 65 DYDRLRPL---SYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILV-GNKKD 120
D++RPL Y +TD ++ + + +++ E+ + IILV NK+D
Sbjct: 72 --DKIRPLWRHYYSNTDGLIFVVDSNDRERIDDAREELHRMINEEELKDAIILVFANKQD 129
Query: 121 LRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETAT 175
L N + + K+ ++ N F C+ + +G+ E F+ T
Sbjct: 130 LPNAMSAAEVTEKLHLNTIRER---------NWFIQSTCATRG-DGLYEGFDWLT 174
>pdb|3D6T|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-Associated Leucine-Rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 171
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 56/124 (45%), Gaps = 6/124 (4%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VAD--IEVDSKQ---VELALWDT 60
KL IVG+ GKT LL K + ++ + V D I++ K+ + L +WD
Sbjct: 2 KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDF 61
Query: 61 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 120
AG+E++ P + L + + + + + W +K + P+ILVG D
Sbjct: 62 AGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSSPVILVGTHLD 121
Query: 121 LRND 124
+ ++
Sbjct: 122 VSDE 125
>pdb|2H57|A Chain A, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|B Chain B, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|C Chain C, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
Length = 190
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 11/87 (12%)
Query: 50 SKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKW-------TPE 102
S + ++D +GQ Y L Y + I+ F IDS D L + K P+
Sbjct: 64 SSSLSFTVFDMSGQGRYRNLWEHYYKEGQAII--FVIDSSDRLRMVVAKEELDTLLNHPD 121
Query: 103 VKHFCPNVPIILVGNKKDLRNDPNTIK 129
+KH +PI+ NK DLR+ ++K
Sbjct: 122 IKH--RRIPILFFANKMDLRDAVTSVK 146
>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5
pdb|1Z6Y|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5
Length = 179
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 6/85 (7%)
Query: 6 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQED 65
K++IVG GKT +L FS ++ PT+ N V +I +++ + +WD GQE
Sbjct: 17 HKVIIVGLDNAGKTTILYQFSMNEVVHTS-PTIGSN-VEEIVINNTR--FLMWDIGGQES 72
Query: 66 YDRLRPLSYPDTDVILMCFSIDSPD 90
Y +T+ +++ +DS D
Sbjct: 73 LRSSWNTYYTNTEFVIVV--VDSTD 95
>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
pdb|3RD1|B Chain B, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
Length = 178
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 56/122 (45%), Gaps = 17/122 (13%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
++++VG A GKT +L + +PT+ N V+ K + +WD GQ
Sbjct: 19 RILMVGLDAAGKTSILYKLKLGEIVTT-IPTIGFNVET---VEYKNISFTVWDVGGQ--- 71
Query: 67 DRLRPL---SYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF----CPNVPIILVGNKK 119
D++RPL Y +T I+ F +DS D + I E +K N +++ NK
Sbjct: 72 DKIRPLWRHYYQNTQAII--FVVDSNDR-DRIGEAREELMKMLNEDEMRNAILLVFANKH 128
Query: 120 DL 121
DL
Sbjct: 129 DL 130
>pdb|2GAO|A Chain A, Crystal Structure Of Human Sar1a In Complex With Gdp
pdb|2GAO|B Chain B, Crystal Structure Of Human Sar1a In Complex With Gdp
Length = 208
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 75/173 (43%), Gaps = 17/173 (9%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
KLV +G GKT LL + D+ + +VPT+ + E+ + +D G E
Sbjct: 37 KLVFLGLDNAGKTTLLHMLKDDRLGQ-HVPTL---HPTSEELTIAGMTFTTFDLGGHEQA 92
Query: 67 DRLRPLSYPDTDVILMCFSIDSPDS---LENIPEKWTPEVKHFCPNVPIILVGNKKDLRN 123
R+ P + I+ F +D D +E+ E NVPI+++GNK D R
Sbjct: 93 RRVWKNYLPAINGIV--FLVDCADHSRLVESKVELNALMTDETISNVPILILGNKID-RT 149
Query: 124 DPNT---IKELNKMKQEPVKPEEGRAMAQKINA--FAYLECSAKSKEGVREVF 171
D + ++E+ + + +G +++NA CS ++G E F
Sbjct: 150 DAISEEKLREIFGLYGQTTG--KGNVTLKELNARPMEVFMCSVLKRQGYGEGF 200
>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5
Length = 187
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 6/85 (7%)
Query: 6 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQED 65
K++IVG GKT +L FS ++ PT+ N V +I +++ + +WD GQE
Sbjct: 17 HKVIIVGLDNAGKTTILYQFSMNEVVHTS-PTIGSN-VEEIVINNTR--FLMWDIGGQES 72
Query: 66 YDRLRPLSYPDTDVILMCFSIDSPD 90
Y +T+ +++ +DS D
Sbjct: 73 LRSSWNTYYTNTEFVIVV--VDSTD 95
>pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|C Chain C, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|D Chain D, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
Length = 183
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 6/85 (7%)
Query: 6 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQED 65
K++IVG GKT +L FS ++ PT+ N V +I +++ + +WD GQE
Sbjct: 23 HKVIIVGLDNAGKTTILYQFSMNEVVHTS-PTIGSN-VEEIVINNTR--FLMWDIGGQES 78
Query: 66 YDRLRPLSYPDTDVILMCFSIDSPD 90
Y +T+ +++ +DS D
Sbjct: 79 LRSSWNTYYTNTEFVIVV--VDSTD 101
>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
(Casp Target)
Length = 181
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 6/85 (7%)
Query: 6 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQED 65
K++IVG GKT +L FS ++ PT+ N V +I +++ + +WD GQE
Sbjct: 22 HKVIIVGLDNAGKTTILYQFSMNEVVHTS-PTIGSN-VEEIVINNTR--FLMWDIGGQES 77
Query: 66 YDRLRPLSYPDTDVILMCFSIDSPD 90
Y +T+ +++ +DS D
Sbjct: 78 LRSSWNTYYTNTEFVIVV--VDSTD 100
>pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8
Length = 179
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 6/85 (7%)
Query: 6 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQED 65
K++IVG GKT +L F ++ PT+ N V +I V K +WD GQE
Sbjct: 17 HKVIIVGLDNAGKTTILYQFLMNEVVHT-SPTIGSN-VEEIVV--KNTHFLMWDIGGQES 72
Query: 66 YDRLRPLSYPDTDVILMCFSIDSPD 90
Y +T+ I++ +DS D
Sbjct: 73 LRSSWNTYYSNTEFIILV--VDSID 95
>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
pdb|1HUR|B Chain B, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
Length = 180
Score = 36.6 bits (83), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 68/143 (47%), Gaps = 21/143 (14%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVY--VPTVFENYVADIEVDSKQVELALWDTAGQE 64
++++VG A GKT +L K + E+ +PT+ N V+ K + +WD GQ
Sbjct: 18 RILMVGLDAAGKTTILY---KLKLGEIVTTIPTIGFNVET---VEYKNISFTVWDVGGQ- 70
Query: 65 DYDRLRPL---SYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP----NVPIILVGN 117
D++RPL + +T ++ F +DS D E + E ++ + +++ N
Sbjct: 71 --DKIRPLWRHYFQNTQGLI--FVVDSNDR-ERVNEAREELMRMLAEDELRDAVLLVFAN 125
Query: 118 KKDLRNDPNTIKELNKMKQEPVK 140
K+DL N N + +K+ ++
Sbjct: 126 KQDLPNAMNAAEITDKLGLHSLR 148
>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1RRG|B Chain B, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1R8Q|A Chain A, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1R8Q|B Chain B, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1RRF|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Monomeric Crystal Form
Length = 181
Score = 36.6 bits (83), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 68/143 (47%), Gaps = 21/143 (14%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVY--VPTVFENYVADIEVDSKQVELALWDTAGQE 64
++++VG A GKT +L K + E+ +PT+ N V+ K + +WD GQ
Sbjct: 19 RILMVGLDAAGKTTILY---KLKLGEIVTTIPTIGFNVET---VEYKNISFTVWDVGGQ- 71
Query: 65 DYDRLRPL---SYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP----NVPIILVGN 117
D++RPL + +T ++ F +DS D E + E ++ + +++ N
Sbjct: 72 --DKIRPLWRHYFQNTQGLI--FVVDSNDR-ERVNEAREELMRMLAEDELRDAVLLVFAN 126
Query: 118 KKDLRNDPNTIKELNKMKQEPVK 140
K+DL N N + +K+ ++
Sbjct: 127 KQDLPNAMNAAEITDKLGLHSLR 149
>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With
Brefeldin A
pdb|1R8S|A Chain A, Arf1[delta1-17]-Gdp In Complex With A Sec7 Domain Carrying
The Mutation Of The Catalytic Glutamate To Lysine
pdb|1S9D|A Chain A, Arf1[delta 1-17]-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1U81|A Chain A, Delta-17 Human Adp Ribosylation Factor 1 Complexed With
Gdp
Length = 164
Score = 36.2 bits (82), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 65/141 (46%), Gaps = 17/141 (12%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
++++VG A GKT +L + +PT+ N V+ K + +WD GQ
Sbjct: 2 RILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVET---VEYKNISFTVWDVGGQ--- 54
Query: 67 DRLRPL---SYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP----NVPIILVGNKK 119
D++RPL + +T ++ F +DS D E + E ++ + +++ NK+
Sbjct: 55 DKIRPLWRHYFQNTQGLI--FVVDSNDR-ERVNEAREELMRMLAEDELRDAVLLVFANKQ 111
Query: 120 DLRNDPNTIKELNKMKQEPVK 140
DL N N + +K+ ++
Sbjct: 112 DLPNAMNAAEITDKLGLHSLR 132
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
pdb|3O47|B Chain B, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
Length = 329
Score = 35.8 bits (81), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 65/141 (46%), Gaps = 17/141 (12%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
++++VG A GKT +L + +PT+ N V+ K + +WD GQ
Sbjct: 167 RILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVET---VEYKNISFTVWDVGGQ--- 219
Query: 67 DRLRPL---SYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP----NVPIILVGNKK 119
D++RPL + +T ++ F +DS D E + E ++ + +++ NK+
Sbjct: 220 DKIRPLWRHYFQNTQGLI--FVVDSNDR-ERVNEAREELMRMLAEDELRDAVLLVFANKQ 276
Query: 120 DLRNDPNTIKELNKMKQEPVK 140
DL N N + +K+ ++
Sbjct: 277 DLPNAMNAAEITDKLGLHSLR 297
>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4
pdb|1Z6X|B Chain B, Structure Of Human Adp-Ribosylation Factor 4
Length = 180
Score = 35.4 bits (80), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 62/127 (48%), Gaps = 23/127 (18%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVY--VPTVFENYVADIEVDSKQVELALWDTAGQE 64
++++VG A GKT +L K + E+ +PT+ N V+ K + +WD GQ
Sbjct: 19 RILMVGLDAAGKTTILY---KLKLGEIVTTIPTIGFNVET---VEYKNICFTVWDVGGQ- 71
Query: 65 DYDRLRPL---SYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-----CPNVPIILVG 116
DR+RPL + +T ++ F +DS D E I E E++ + ++L
Sbjct: 72 --DRIRPLWKHYFQNTQGLI--FVVDSNDR-ERIQEV-ADELQKMLLVDELRDAVLLLFA 125
Query: 117 NKKDLRN 123
NK+DL N
Sbjct: 126 NKQDLPN 132
>pdb|1M2O|B Chain B, Crystal Structure Of The Sec23-Sar1 Complex
pdb|1M2O|D Chain D, Crystal Structure Of The Sec23-Sar1 Complex
Length = 190
Score = 35.0 bits (79), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 40/185 (21%), Positives = 67/185 (36%), Gaps = 32/185 (17%)
Query: 5 RKKLVIVGDGACGKTCLLIVFSKDQFPEV---YVPTVFENYVADIEVDSKQVELALWDTA 61
KL+ +G GKT LL + D+ + + PT E + +I+ + +D
Sbjct: 23 HGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTT-------FDLG 75
Query: 62 GQEDYDRLRPLSYPDTDVILMCFSIDSP----------DSLENIPEKWTPEVKHFCPNVP 111
G RL +P+ + I+ P D+L NI E +VP
Sbjct: 76 GHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAE---------LKDVP 126
Query: 112 IILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVF 171
+++GNK D PN + E + G + CS + G E F
Sbjct: 127 FVILGNKID---APNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAF 183
Query: 172 ETATR 176
+ ++
Sbjct: 184 QWLSQ 188
>pdb|2QTV|B Chain B, Structure Of Sec23-Sar1 Complexed With The Active Fragment
Of Sec31
Length = 167
Score = 35.0 bits (79), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 40/181 (22%), Positives = 65/181 (35%), Gaps = 32/181 (17%)
Query: 5 RKKLVIVGDGACGKTCLLIVFSKDQFPEV---YVPTVFENYVADIEVDSKQVELALWDTA 61
KL+ +G GKT LL + D+ + + PT E + +I+ + +D
Sbjct: 1 HGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTT-------FDLG 53
Query: 62 GQEDYDRLRPLSYPDTDVILMCFSIDSP----------DSLENIPEKWTPEVKHFCPNVP 111
G RL +P+ + I+ P D+L NI E +VP
Sbjct: 54 GHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAE---------LKDVP 104
Query: 112 IILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVF 171
+++GNK D PN + E + G + CS + G E F
Sbjct: 105 FVILGNKID---APNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAF 161
Query: 172 E 172
+
Sbjct: 162 Q 162
>pdb|3H2Y|A Chain A, Crystal Structure Of Yqeh Gtpase From Bacillus Anthracis
With Dgdp Bound
Length = 368
Score = 34.7 bits (78), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 48/113 (42%), Gaps = 24/113 (21%)
Query: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLE-------NIPEKWTPEVKHFCPNVPIILVGNK 118
Y+ ++ +S D D + + I D+L + W P + F N ++LVGNK
Sbjct: 46 YNEIQDVSLTDDDFLRILNGIGKSDALVVKIVDIFDFNGSWLPGLHRFVGNNKVLLVGNK 105
Query: 119 KDLRNDPNTIKE-------LNKMKQEPVKPEE--------GRAMAQKINAFAY 156
DL P ++K KQ +KPE+ G+ +A+ +A Y
Sbjct: 106 ADLI--PKSVKHDKVKHWXRYSAKQLGLKPEDVFLISAAKGQGIAELADAIEY 156
>pdb|2FMX|A Chain A, An Open Conformation Of Switch I Revealed By Sar1-gdp
Crystal Structure At Low Mg(2+)
pdb|2FMX|B Chain B, An Open Conformation Of Switch I Revealed By Sar1-gdp
Crystal Structure At Low Mg(2+)
Length = 195
Score = 34.7 bits (78), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 72/173 (41%), Gaps = 17/173 (9%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
KLV +G GKT LL + D+ + +VPT+ + E+ + +D G
Sbjct: 24 KLVFLGLDNAGKTTLLHMLKDDRLGQ-HVPTL---HPTSEELTIAGMTFTTFDLGGHIQA 79
Query: 67 DRLRPLSYPDTDVILMCFSIDSPDS---LENIPEKWTPEVKHFCPNVPIILVGNKKDLRN 123
R+ P + I+ F +D D LE+ E + NVPI+++GNK D
Sbjct: 80 RRVWKNYLPAINGIV--FLVDCADHERLLESKEELDSLMTDETIANVPILILGNKID--- 134
Query: 124 DPNTIKE--LNKM-KQEPVKPEEGRAMAQKINA--FAYLECSAKSKEGVREVF 171
P I E L +M +G +++NA CS ++G E F
Sbjct: 135 RPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGF 187
>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2
(Scarf2) Complexed With Gdp-3'p At 1.6a Resolution
Length = 181
Score = 34.7 bits (78), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 16/89 (17%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVY--VPTVFENYVADIEVDSKQVELALWDTAGQE 64
++++VG GKT +L K + EV +PT+ N V K + +WD GQ
Sbjct: 19 RILMVGLDGAGKTTVLY---KLKLGEVITTIPTIGFNVET---VQYKNISFTVWDVGGQ- 71
Query: 65 DYDRLRPL---SYPDTDVILMCFSIDSPD 90
DR+R L Y +T+ ++ F IDS D
Sbjct: 72 --DRIRSLWRHYYRNTEGVI--FVIDSND 96
>pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
pdb|3AQ4|B Chain B, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
Length = 184
Score = 34.7 bits (78), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 77/174 (44%), Gaps = 35/174 (20%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVY--VPTVFENYVADIEVDSKQVELALWDTAGQE 64
++++VG A GKT +L K + E+ +PT+ N V+ K + +WD GQ
Sbjct: 22 RILMVGLDAAGKTTILY---KLKLGEIVTTIPTIGFNVET---VEYKNISFTVWDVGGQ- 74
Query: 65 DYDRLRPL---SYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-----NVPIILVG 116
D++RPL + +T ++ F +DS D + + E+ + +++
Sbjct: 75 --DKIRPLWRHYFQNTQGLI--FVVDSNDRDRVVEAR--DELHRMLNEDELRDAVLLVFA 128
Query: 117 NKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECS-AKSKEGVRE 169
NK+DL N N + +K+ ++ Y++ + A S EG+ E
Sbjct: 129 NKQDLPNAMNAAEITDKLGLHSLRQRH-----------WYIQSTCATSGEGLYE 171
>pdb|1F6B|A Chain A, Crystal Structure Of Sar1-Gdp Complex
pdb|1F6B|B Chain B, Crystal Structure Of Sar1-Gdp Complex
Length = 198
Score = 34.3 bits (77), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 72/173 (41%), Gaps = 17/173 (9%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
KLV +G GKT LL + D+ + +VPT+ + E+ + +D G
Sbjct: 27 KLVFLGLDNAGKTTLLHMLKDDRLGQ-HVPTL---HPTSEELTIAGMTFTTFDLGGHIQA 82
Query: 67 DRLRPLSYPDTDVILMCFSIDSPDS---LENIPEKWTPEVKHFCPNVPIILVGNKKDLRN 123
R+ P + I+ F +D D LE+ E + NVPI+++GNK D
Sbjct: 83 RRVWKNYLPAINGIV--FLVDCADHERLLESKEELDSLMTDETIANVPILILGNKID--- 137
Query: 124 DPNTIKELNKMKQEPVKPE---EGRAMAQKINA--FAYLECSAKSKEGVREVF 171
P I E + + + +G +++NA CS ++G E F
Sbjct: 138 RPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGF 190
>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein,
Gdp- Bound
Length = 181
Score = 33.9 bits (76), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 44/89 (49%), Gaps = 16/89 (17%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVY--VPTVFENYVADIEVDSKQVELALWDTAGQE 64
++++VG GKT +L K + EV +PT+ N V K + +WD GQ
Sbjct: 19 RILMVGLDGAGKTTVLY---KLKLGEVITTIPTIGFNVET---VQYKNISFTVWDVGGQ- 71
Query: 65 DYDRLRPL---SYPDTDVILMCFSIDSPD 90
DR+R L Y +T+ ++ F +DS D
Sbjct: 72 --DRIRSLWRHYYRNTEGVI--FVVDSND 96
>pdb|2FA9|A Chain A, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight
Into The Coat-controlled Gtp Hydrolysis In The
Disassembly Of Cop Ii
pdb|2FA9|B Chain B, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight
Into The Coat-controlled Gtp Hydrolysis In The
Disassembly Of Cop Ii
Length = 189
Score = 33.9 bits (76), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 72/173 (41%), Gaps = 17/173 (9%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
KLV +G GKT LL + D+ + +VPT+ + E+ + +D G
Sbjct: 18 KLVFLGLDNAGKTTLLHMLKDDRLGQ-HVPTL---HPTSEELTIAGMTFTTFDLGGGIQA 73
Query: 67 DRLRPLSYPDTDVILMCFSIDSPDS---LENIPEKWTPEVKHFCPNVPIILVGNKKDLRN 123
R+ P + I+ F +D D LE+ E + NVPI+++GNK D
Sbjct: 74 RRVWKNYLPAINGIV--FLVDCADHERLLESKEELDSLMTDETIANVPILILGNKID--- 128
Query: 124 DPNTIKE--LNKM-KQEPVKPEEGRAMAQKINA--FAYLECSAKSKEGVREVF 171
P I E L +M +G +++NA CS ++G E F
Sbjct: 129 RPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGF 181
>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop
Core Complex
pdb|3TJZ|D Chain D, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop
Core Complex
Length = 164
Score = 33.5 bits (75), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 44/89 (49%), Gaps = 16/89 (17%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVY--VPTVFENYVADIEVDSKQVELALWDTAGQE 64
++++VG GKT +L K + EV +PT+ N V K + +WD GQ
Sbjct: 2 RILMVGLDGAGKTTVLY---KLKLGEVITTIPTIGFNVET---VQYKNISFTVWDVGGQ- 54
Query: 65 DYDRLRPL---SYPDTDVILMCFSIDSPD 90
DR+R L Y +T+ ++ F +DS D
Sbjct: 55 --DRIRSLWRHYYRNTEGVI--FVVDSND 79
>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By
Human Arf6-Gtp
pdb|2A5F|A Chain A, Cholera Toxin A1 Subunit Bound To Its Substrate, Nad+, And
Its Human Protein Activator, Arf6
pdb|2J5X|A Chain A, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
pdb|2J5X|B Chain B, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
Length = 175
Score = 32.7 bits (73), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 70/167 (41%), Gaps = 21/167 (12%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
+++++G A GKT +L Q +PTV N V K V+ +WD GQ
Sbjct: 15 RILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVET---VTYKNVKFNVWDVGGQ--- 67
Query: 67 DRLRPL---SYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILV-GNKKDLR 122
D++RPL Y T ++ D ++ ++ + IIL+ NK+DL
Sbjct: 68 DKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDL- 126
Query: 123 NDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVRE 169
P+ MK ++ + G + N + C A S +G+ E
Sbjct: 127 --PDA------MKPHEIQEKLGLTRIRDRNWYVQPSC-ATSGDGLYE 164
>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp
Length = 174
Score = 32.3 bits (72), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 70/167 (41%), Gaps = 21/167 (12%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
+++++G A GKT +L Q +PTV N V K V+ +WD GQ
Sbjct: 14 RILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVET---VTYKNVKFNVWDVGGQ--- 66
Query: 67 DRLRPL---SYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILV-GNKKDLR 122
D++RPL Y T ++ D ++ ++ + IIL+ NK+DL
Sbjct: 67 DKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDL- 125
Query: 123 NDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVRE 169
P+ MK ++ + G + N + C A S +G+ E
Sbjct: 126 --PDA------MKPHEIQEKLGLTRIRDRNWYVQPSC-ATSGDGLYE 163
>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp
pdb|3N5C|B Chain B, Crystal Structure Of Arf6delta13 Complexed With Gdp
Length = 162
Score = 32.3 bits (72), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 70/167 (41%), Gaps = 21/167 (12%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
+++++G A GKT +L Q +PTV N V K V+ +WD GQ
Sbjct: 2 RILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVET---VTYKNVKFNVWDVGGQ--- 54
Query: 67 DRLRPL---SYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILV-GNKKDLR 122
D++RPL Y T ++ D ++ ++ + IIL+ NK+DL
Sbjct: 55 DKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDL- 113
Query: 123 NDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVRE 169
P+ MK ++ + G + N + C A S +G+ E
Sbjct: 114 --PDA------MKPHEIQEKLGLTRIRDRNWYVQPSC-ATSGDGLYE 151
>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex
pdb|4FME|F Chain F, Espg-Rab1-Arf6 Complex
Length = 160
Score = 32.3 bits (72), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 70/167 (41%), Gaps = 21/167 (12%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
+++++G A GKT +L Q +PTV N V K V+ +WD GQ
Sbjct: 2 RILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVET---VTYKNVKFNVWDVGGQ--- 54
Query: 67 DRLRPL---SYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILV-GNKKDLR 122
D++RPL Y T ++ D ++ ++ + IIL+ NK+DL
Sbjct: 55 DKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDL- 113
Query: 123 NDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVRE 169
P+ MK ++ + G + N + C A S +G+ E
Sbjct: 114 --PDA------MKPHEIQEKLGLTRIRDRNWYVQPSC-ATSGDGLYE 151
>pdb|1N82|A Chain A, The High-Resolution Crystal Structure Of Ixt6, A
Thermophilic, Intracellular Xylanase From G.
Stearothermophilus
pdb|1N82|B Chain B, The High-Resolution Crystal Structure Of Ixt6, A
Thermophilic, Intracellular Xylanase From G.
Stearothermophilus
pdb|3MUA|A Chain A, Enzyme-Substrate Interactions Of Ixt6, The Intracellular
Xylanase Of G. Stearothermophilus.
pdb|3MUA|B Chain B, Enzyme-Substrate Interactions Of Ixt6, The Intracellular
Xylanase Of G. Stearothermophilus
Length = 331
Score = 32.0 bits (71), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 27/52 (51%)
Query: 111 PIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAK 162
P+ + K+ L + N+I N MK E ++PEEG+ Q+ + CS +
Sbjct: 24 PVTIEMQKQLLIDHVNSITAENHMKFEHLQPEEGKFTFQEADRIVDFACSHR 75
>pdb|3MUI|A Chain A, Enzyme-Substrate Interactions Of Ixt6, The Intracellular
Xylanase Of G. Stearothermophilus.
pdb|3MUI|B Chain B, Enzyme-Substrate Interactions Of Ixt6, The Intracellular
Xylanase Of G. Stearothermophilus
Length = 331
Score = 32.0 bits (71), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 27/52 (51%)
Query: 111 PIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAK 162
P+ + K+ L + N+I N MK E ++PEEG+ Q+ + CS +
Sbjct: 24 PVTIEMQKQLLIDHVNSITAENHMKFEHLQPEEGKFTFQEADRIVDFACSHR 75
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 31.6 bits (70), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 8/85 (9%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
+++++G A GKT +L Q +PTV N V K V+ +WD GQ
Sbjct: 324 RILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVET---VTYKNVKFNVWDVGGQ--- 376
Query: 67 DRLRPL-SYPDTDVILMCFSIDSPD 90
D++RPL + T + F +D D
Sbjct: 377 DKIRPLWRHYYTGTQGLIFVVDCAD 401
>pdb|3MS8|A Chain A, Enzyme-Substrate Interactions Of Ixt6, The Intracellular
Xylanase Of G. Stearothermophilus.
pdb|3MS8|B Chain B, Enzyme-Substrate Interactions Of Ixt6, The Intracellular
Xylanase Of G. Stearothermophilus
Length = 331
Score = 31.6 bits (70), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 27/52 (51%)
Query: 111 PIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAK 162
P+ + K+ L + N+I N MK E ++PEEG+ Q+ + CS +
Sbjct: 24 PVTIEMQKQLLIDHVNSITAENHMKFEHLQPEEGKFTFQEADRIVDFACSHR 75
>pdb|2Q8X|A Chain A, The High-resolution Crystal Structure Of Ixt6, A
Thermophilic, Intracellular Xylanase From G.
Stearothermophilus
pdb|2Q8X|B Chain B, The High-resolution Crystal Structure Of Ixt6, A
Thermophilic, Intracellular Xylanase From G.
Stearothermophilus
pdb|3MSD|A Chain A, Enzyme-Substrate Interactions Of Ixt6, The Intracellular
Xylanase Of G. Stearothermophilus.
pdb|3MSD|B Chain B, Enzyme-Substrate Interactions Of Ixt6, The Intracellular
Xylanase Of G. Stearothermophilus.
pdb|3MSG|A Chain A, Enzyme-Substrate Interactions Of Ixt6, The Intracellular
Xylanase Of G. Stearothermophilus.
pdb|3MSG|B Chain B, Enzyme-Substrate Interactions Of Ixt6, The Intracellular
Xylanase Of G. Stearothermophilus
Length = 331
Score = 31.6 bits (70), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 27/52 (51%)
Query: 111 PIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAK 162
P+ + K+ L + N+I N MK E ++PEEG+ Q+ + CS +
Sbjct: 24 PVTIEMQKQLLIDHVNSITAENHMKFEHLQPEEGKFTFQEADRIVDFACSHR 75
>pdb|3DPU|A Chain A, Roccor Domain Tandem Of Rab Family Protein (Roco)
pdb|3DPU|B Chain B, Roccor Domain Tandem Of Rab Family Protein (Roco)
Length = 535
Score = 31.6 bits (70), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 42/183 (22%), Positives = 69/183 (37%), Gaps = 26/183 (14%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVE---------LAL 57
K+ ++GDG GKT LL + F T N V + K +E
Sbjct: 43 KVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHF 102
Query: 58 WDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGN 117
WD GQE + V ++ +DS ++ W ++ + P+I+V N
Sbjct: 103 WDFGGQEIMHASHQFFMTRSSVYMLL--LDS--RTDSNKHYWLRHIEKYGGKSPVIVVMN 158
Query: 118 KKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRA 177
K D +P+ E K+ + E N F + C K+ +GV + ++ A
Sbjct: 159 KID--ENPSYNIEQKKINERFPAIE---------NRFHRISC--KNGDGVESIAKSLKSA 205
Query: 178 ALQ 180
L
Sbjct: 206 VLH 208
>pdb|3P7M|A Chain A, Structure Of Putative Lactate Dehydrogenase From
Francisella Tularensis Subsp. Tularensis Schu S4
pdb|3P7M|B Chain B, Structure Of Putative Lactate Dehydrogenase From
Francisella Tularensis Subsp. Tularensis Schu S4
pdb|3P7M|C Chain C, Structure Of Putative Lactate Dehydrogenase From
Francisella Tularensis Subsp. Tularensis Schu S4
pdb|3P7M|D Chain D, Structure Of Putative Lactate Dehydrogenase From
Francisella Tularensis Subsp. Tularensis Schu S4
Length = 321
Score = 31.2 bits (69), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 54/132 (40%), Gaps = 18/132 (13%)
Query: 2 AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQ---VELALW 58
A RKK+ +VG G G T + K Q +V + + + +D Q +E +
Sbjct: 2 AXARKKITLVGAGNIGGTLAHLALIK-QLGDVVLFDIAQGXPNGKALDLLQTCPIEGVDF 60
Query: 59 DTAGQEDYDRLRPLSYPDTDVILMCFSI-----DSPDSLENIPEKWTPEV----KHFCPN 109
G DY L ++DV+++ + S D L I K V KH CPN
Sbjct: 61 KVRGTNDYKDLE-----NSDVVIVTAGVPRKPGXSRDDLLGINIKVXQTVGEGIKHNCPN 115
Query: 110 VPIILVGNKKDL 121
+I + N D+
Sbjct: 116 AFVICITNPLDI 127
>pdb|2HJR|A Chain A, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|B Chain B, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|C Chain C, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|D Chain D, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|E Chain E, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|F Chain F, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|G Chain G, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|H Chain H, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|I Chain I, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|J Chain J, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|K Chain K, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|L Chain L, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
Length = 328
Score = 30.8 bits (68), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 53/129 (41%), Gaps = 18/129 (13%)
Query: 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTA-- 61
+RKK+ I+G G G T L++ KD +VY+ + E +D + A
Sbjct: 13 MRKKISIIGAGQIGSTIALLLGQKD-LGDVYMFDIIEGVPQGKALDLNHCMALIGSPAKI 71
Query: 62 -GQEDYDRLRPLSYPDTDVILMCFSI---------DSPDSLENIPEKWTPEVKHFCPNVP 111
G+ +Y+ L+ ++DV+++ + D I V +CPN
Sbjct: 72 FGENNYEYLQ-----NSDVVIITAGVPRKPNMTRSDLLTVNAKIVGSVAENVGKYCPNAF 126
Query: 112 IILVGNKKD 120
+I + N D
Sbjct: 127 VICITNPLD 135
>pdb|2EWD|A Chain A, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum Complexed With Substrate (Pyruvic
Acid) And Cofactor Analog (3-Acetylpyridine Adenine
Dinucleotide).
pdb|2EWD|B Chain B, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum Complexed With Substrate (Pyruvic
Acid) And Cofactor Analog (3-Acetylpyridine Adenine
Dinucleotide)
Length = 317
Score = 30.8 bits (68), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 53/129 (41%), Gaps = 18/129 (13%)
Query: 5 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTA--- 61
R+K+ ++G G G IV KD +V + + E +D + T+
Sbjct: 4 RRKIAVIGSGQIGGNIAYIV-GKDNLADVVLFDIAEGIPQGKALDITHSMVMFGSTSKVI 62
Query: 62 GQEDYDRLRPLSYPDTDVILMCFSI------DSPDSL---ENIPEKWTPEVKHFCPNVPI 112
G +DY + +DV+++ SI D + L I + VK +CPN +
Sbjct: 63 GTDDYADIS-----GSDVVIITASIPGRPKDDRSELLFGNARILDSVAEGVKKYCPNAFV 117
Query: 113 ILVGNKKDL 121
I + N D+
Sbjct: 118 ICITNPLDV 126
>pdb|2QAG|A Chain A, Crystal Structure Of Human Septin Trimer 267
Length = 361
Score = 30.8 bits (68), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 10/68 (14%)
Query: 8 LVIVGDGACGKTCLL-IVFSKDQFPEVYVPTVFENYVADIEVDSKQVE---------LAL 57
L++VG+ GK+ L+ +F D +PE +P E +++++ VE L +
Sbjct: 40 LMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTV 99
Query: 58 WDTAGQED 65
DT G D
Sbjct: 100 VDTPGYGD 107
>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex
Length = 162
Score = 30.8 bits (68), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 8/85 (9%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY 66
+++ +G A GKT +L Q +PTV N V K V+ +WD GQ
Sbjct: 2 RILXLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVET---VTYKNVKFNVWDVGGQ--- 54
Query: 67 DRLRPL-SYPDTDVILMCFSIDSPD 90
D++RPL + T + F +D D
Sbjct: 55 DKIRPLWRHYYTGTQGLIFVVDCAD 79
>pdb|2FM3|A Chain A, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum Complexed With Substrate (Pyruvic
Acid) And Cofactor (B- Nicotinamide Adenine
Dinucleotide)
pdb|2FM3|B Chain B, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum Complexed With Substrate (Pyruvic
Acid) And Cofactor (B- Nicotinamide Adenine
Dinucleotide)
pdb|2FN7|A Chain A, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum Complexed With Substrate (Lactic
Acid) And Cofactor (B- Nicotinamide Adenine
Dinucleotide)
pdb|2FN7|B Chain B, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum Complexed With Substrate (Lactic
Acid) And Cofactor (B- Nicotinamide Adenine
Dinucleotide)
pdb|2FNZ|A Chain A, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum Complexed With Cofactor
(B-Nicotinamide Adenine Dinucleotide) And Inhibitor
(Oxamic Acid)
pdb|2FNZ|B Chain B, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum Complexed With Cofactor
(B-Nicotinamide Adenine Dinucleotide) And Inhibitor
(Oxamic Acid)
pdb|2FRM|A Chain A, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum
pdb|2FRM|B Chain B, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum
pdb|2FRM|C Chain C, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum
pdb|2FRM|D Chain D, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum
Length = 321
Score = 30.8 bits (68), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 52/129 (40%), Gaps = 18/129 (13%)
Query: 5 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTA--- 61
R+K+ ++G G G IV KD +V + + E +D + T+
Sbjct: 4 RRKIAVIGSGQIGGNIAYIV-GKDNLADVVLFDIAEGIPQGKALDITHSMVMFGSTSKVI 62
Query: 62 GQEDYDRLRPLSYPDTDVILMCFSI------DSPDSL---ENIPEKWTPEVKHFCPNVPI 112
G DY + +DV+++ SI D + L I + VK +CPN +
Sbjct: 63 GTNDYADIS-----GSDVVIITASIPGRPKDDRSELLFGNARILDSVAEGVKKYCPNAFV 117
Query: 113 ILVGNKKDL 121
I + N D+
Sbjct: 118 ICITNPLDV 126
>pdb|3FTQ|A Chain A, Crystal Structure Of Septin 2 In Complex With Gppnhp And
Mg2+
pdb|3FTQ|B Chain B, Crystal Structure Of Septin 2 In Complex With Gppnhp And
Mg2+
pdb|3FTQ|C Chain C, Crystal Structure Of Septin 2 In Complex With Gppnhp And
Mg2+
pdb|3FTQ|D Chain D, Crystal Structure Of Septin 2 In Complex With Gppnhp And
Mg2+
Length = 274
Score = 30.4 bits (67), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 10/68 (14%)
Query: 8 LVIVGDGACGKTCLL-IVFSKDQFPEVYVPTVFENYVADIEVDSKQVE---------LAL 57
L++VG+ GK+ L+ +F D +PE +P E +++++ VE L +
Sbjct: 8 LMVVGESGLGKSTLINSLFLTDLYPERIIPGAAEKIERTVQIEASTVEIEERGVKLRLTV 67
Query: 58 WDTAGQED 65
DT G D
Sbjct: 68 VDTPGYGD 75
>pdb|2QA5|A Chain A, Crystal Structure Of Sept2 G-Domain
pdb|2QA5|B Chain B, Crystal Structure Of Sept2 G-Domain
Length = 315
Score = 29.6 bits (65), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 10/68 (14%)
Query: 8 LVIVGDGACGKTCLL-IVFSKDQFPEVYVPTVFENYVADIEVDSKQVE---------LAL 57
L +VG+ GK+ L+ +F D +PE +P E +++++ VE L +
Sbjct: 40 LXVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTV 99
Query: 58 WDTAGQED 65
DT G D
Sbjct: 100 VDTPGYGD 107
>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
pdb|1MOZ|B Chain B, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
Length = 183
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 18/90 (20%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYV--PTVFENYVADIEVDS-KQVELALWDTAGQ 63
+++I+G GKT +L + Q EV PT+ N +E S K ++L +WD GQ
Sbjct: 20 RILILGLDGAGKTTILY---RLQIGEVVTTKPTIGFN----VETLSYKNLKLNVWDLGGQ 72
Query: 64 EDYDRLRPL---SYPDTDVILMCFSIDSPD 90
+RP Y DT ++ F +DS D
Sbjct: 73 TS---IRPYWRCYYADTAAVI--FVVDSTD 97
>pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|B Chain B, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|C Chain C, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|D Chain D, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
Length = 165
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 10/86 (11%)
Query: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVY--VPTVFENYVADIEVDSKQVELALWDTAGQE 64
+++I+G GKT +L + Q EV +PT+ N V K ++ +WD GQ
Sbjct: 4 RILILGLDGAGKTTILY---RLQVGEVVTTIPTIGFNVET---VTYKNLKFQVWDLGGQT 57
Query: 65 DYDRLRPLSYPDTDVILMCFSIDSPD 90
Y +TD ++ + +DS D
Sbjct: 58 SIRPYWRCYYSNTDAVI--YVVDSCD 81
>pdb|3EC1|A Chain A, Structure Of Yqeh Gtpase From Geobacillus
Stearothermophilus (An Atnos1 ATNOA1 ORTHOLOG)
pdb|3EC1|B Chain B, Structure Of Yqeh Gtpase From Geobacillus
Stearothermophilus (An Atnos1 ATNOA1 ORTHOLOG)
Length = 369
Score = 28.1 bits (61), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 11/85 (12%)
Query: 64 EDYDRLRPLSYPDTDVILMCFSIDSPDSLE-NIPE------KWTPEVKHFCPNVPIILVG 116
+ Y+ ++ + D D + M I +L NI + + P + F + PI+LVG
Sbjct: 46 KHYNEVQDVPLDDDDFLSMLHRIGESKALVVNIVDIFDFNGSFIPGLPRFAADNPILLVG 105
Query: 117 NKKDLR----NDPNTIKELNKMKQE 137
NK DL P ++ + +M +E
Sbjct: 106 NKADLLPRSVKYPKLLRWMRRMAEE 130
>pdb|2QNR|A Chain A, Human Septin 2 In Complex With Gdp
pdb|2QNR|B Chain B, Human Septin 2 In Complex With Gdp
Length = 301
Score = 26.6 bits (57), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 10/68 (14%)
Query: 8 LVIVGDGACGKTCLL-IVFSKDQFPEVYVPTVFENYVADIEVDSKQVE---------LAL 57
L +VG+ GK+ L+ +F D +PE + E +++++ VE L +
Sbjct: 21 LXVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTV 80
Query: 58 WDTAGQED 65
DT G D
Sbjct: 81 VDTPGYGD 88
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,853,239
Number of Sequences: 62578
Number of extensions: 241727
Number of successful extensions: 1233
Number of sequences better than 100.0: 353
Number of HSP's better than 100.0 without gapping: 288
Number of HSP's successfully gapped in prelim test: 65
Number of HSP's that attempted gapping in prelim test: 593
Number of HSP's gapped (non-prelim): 354
length of query: 192
length of database: 14,973,337
effective HSP length: 93
effective length of query: 99
effective length of database: 9,153,583
effective search space: 906204717
effective search space used: 906204717
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)