Query psy4710
Match_columns 192
No_of_seqs 154 out of 1697
Neff 11.0
Searched_HMMs 46136
Date Fri Aug 16 23:52:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4710.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4710hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01875 RhoG RhoG subfamily. 100.0 3.1E-40 6.7E-45 228.2 20.8 189 4-192 2-191 (191)
2 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 100.0 1.5E-38 3.2E-43 217.6 20.0 177 3-179 3-180 (182)
3 cd04131 Rnd Rnd subfamily. Th 100.0 3.3E-38 7.1E-43 215.5 20.2 175 5-179 1-176 (178)
4 KOG0092|consensus 100.0 1.2E-38 2.7E-43 209.6 17.0 170 1-184 1-172 (200)
5 cd04134 Rho3 Rho3 subfamily. 100.0 5.2E-38 1.1E-42 216.9 20.9 187 6-192 1-189 (189)
6 KOG0084|consensus 100.0 9.8E-39 2.1E-43 210.9 16.3 167 4-183 8-176 (205)
7 cd01874 Cdc42 Cdc42 subfamily. 100.0 1.3E-37 2.8E-42 212.3 20.2 173 6-178 2-174 (175)
8 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 100.0 2.5E-37 5.5E-42 217.6 19.5 178 4-181 12-190 (232)
9 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 100.0 3.1E-37 6.7E-42 216.2 19.4 178 5-182 1-179 (222)
10 cd04133 Rop_like Rop subfamily 100.0 6.5E-37 1.4E-41 208.3 20.0 173 6-180 2-174 (176)
11 cd01871 Rac1_like Rac1-like su 100.0 6.4E-37 1.4E-41 208.7 19.9 173 5-177 1-173 (174)
12 cd04132 Rho4_like Rho4-like su 100.0 6.2E-37 1.3E-41 211.4 19.4 179 6-192 1-187 (187)
13 KOG0394|consensus 100.0 2.5E-37 5.4E-42 201.7 15.3 168 5-183 9-182 (210)
14 cd04121 Rab40 Rab40 subfamily. 100.0 1.5E-36 3.2E-41 208.6 19.0 165 4-182 5-170 (189)
15 smart00174 RHO Rho (Ras homolo 100.0 4.8E-36 1E-40 204.8 19.7 173 8-180 1-173 (174)
16 cd04135 Tc10 TC10 subfamily. 100.0 1.2E-35 2.6E-40 202.8 20.7 174 6-179 1-174 (174)
17 cd04120 Rab12 Rab12 subfamily. 100.0 7.2E-36 1.6E-40 207.0 18.7 163 6-181 1-165 (202)
18 KOG0078|consensus 100.0 3.1E-36 6.8E-41 201.8 16.0 166 4-183 11-178 (207)
19 PTZ00369 Ras-like protein; Pro 100.0 1.2E-35 2.5E-40 205.2 19.1 167 1-181 1-169 (189)
20 KOG0098|consensus 100.0 4E-36 8.7E-41 196.5 14.4 166 3-182 4-171 (216)
21 KOG0094|consensus 100.0 6E-36 1.3E-40 197.1 15.1 165 4-182 21-188 (221)
22 cd04144 Ras2 Ras2 subfamily. 100.0 1.2E-35 2.7E-40 205.3 17.2 172 7-192 1-190 (190)
23 cd04130 Wrch_1 Wrch-1 subfamil 100.0 8.6E-35 1.9E-39 198.3 20.3 171 6-176 1-171 (173)
24 cd04141 Rit_Rin_Ric Rit/Rin/Ri 100.0 4E-35 8.7E-40 199.6 18.2 163 5-181 2-166 (172)
25 cd01870 RhoA_like RhoA-like su 100.0 1.5E-34 3.3E-39 197.5 20.2 174 5-178 1-174 (175)
26 KOG0393|consensus 100.0 1.8E-35 3.8E-40 199.0 14.1 181 3-183 2-183 (198)
27 cd04107 Rab32_Rab38 Rab38/Rab3 100.0 2E-34 4.4E-39 200.9 18.7 164 6-182 1-171 (201)
28 KOG0080|consensus 100.0 8E-35 1.7E-39 185.9 14.0 165 4-182 10-177 (209)
29 cd04136 Rap_like Rap-like subf 100.0 3E-34 6.5E-39 193.8 17.5 160 5-178 1-162 (163)
30 cd04175 Rap1 Rap1 subgroup. T 100.0 2.9E-34 6.3E-39 194.2 17.2 161 5-179 1-163 (164)
31 cd04122 Rab14 Rab14 subfamily. 100.0 4.5E-34 9.8E-39 193.6 18.2 162 5-180 2-165 (166)
32 cd04129 Rho2 Rho2 subfamily. 100.0 1.7E-33 3.7E-38 194.1 20.5 185 5-191 1-186 (187)
33 cd01865 Rab3 Rab3 subfamily. 100.0 1.2E-33 2.7E-38 191.2 18.6 161 6-180 2-164 (165)
34 cd04110 Rab35 Rab35 subfamily. 100.0 1.9E-33 4.1E-38 195.6 19.4 165 4-182 5-170 (199)
35 KOG0093|consensus 100.0 2.1E-34 4.5E-39 181.5 13.0 166 4-183 20-187 (193)
36 cd01867 Rab8_Rab10_Rab13_like 100.0 1.4E-33 2.9E-38 191.4 18.1 163 4-180 2-166 (167)
37 cd04176 Rap2 Rap2 subgroup. T 100.0 1.4E-33 3E-38 190.6 17.7 160 5-178 1-162 (163)
38 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 100.0 1.8E-33 3.9E-38 190.7 18.1 161 5-179 2-164 (166)
39 PLN03071 GTP-binding nuclear p 100.0 1.9E-33 4.1E-38 197.9 18.8 163 3-181 11-174 (219)
40 cd04125 RabA_like RabA-like su 100.0 2.8E-33 6E-38 193.3 19.3 163 6-182 1-165 (188)
41 cd04142 RRP22 RRP22 subfamily. 100.0 3E-33 6.4E-38 193.9 19.3 174 6-192 1-198 (198)
42 cd04117 Rab15 Rab15 subfamily. 100.0 2.3E-33 5E-38 189.1 18.1 158 6-177 1-160 (161)
43 cd04127 Rab27A Rab27a subfamil 100.0 1.6E-33 3.5E-38 193.3 17.4 163 4-180 3-178 (180)
44 cd04126 Rab20 Rab20 subfamily. 100.0 2.8E-33 6.2E-38 196.1 18.7 172 6-181 1-192 (220)
45 KOG0087|consensus 100.0 8.7E-34 1.9E-38 189.3 15.0 167 4-184 13-181 (222)
46 cd04138 H_N_K_Ras_like H-Ras/N 100.0 2.7E-33 5.8E-38 188.9 17.6 159 5-178 1-161 (162)
47 PF00071 Ras: Ras family; Int 100.0 2.2E-33 4.8E-38 189.5 17.1 159 7-179 1-161 (162)
48 cd04140 ARHI_like ARHI subfami 100.0 3.3E-33 7.2E-38 189.1 17.5 158 6-177 2-163 (165)
49 KOG0079|consensus 100.0 2E-34 4.4E-39 181.7 10.6 163 6-182 9-172 (198)
50 cd04112 Rab26 Rab26 subfamily. 100.0 4.7E-33 1E-37 192.5 18.3 163 6-182 1-166 (191)
51 cd04119 RJL RJL (RabJ-Like) su 100.0 4E-33 8.6E-38 189.2 17.6 160 6-179 1-167 (168)
52 cd04124 RabL2 RabL2 subfamily. 100.0 6.4E-33 1.4E-37 187.0 18.5 159 6-181 1-160 (161)
53 cd04106 Rab23_lke Rab23-like s 100.0 3.5E-33 7.5E-38 188.5 17.1 158 6-177 1-161 (162)
54 cd00157 Rho Rho (Ras homology) 100.0 9.3E-33 2E-37 187.9 19.3 170 6-176 1-170 (171)
55 cd01864 Rab19 Rab19 subfamily. 100.0 6.1E-33 1.3E-37 187.9 17.8 161 4-177 2-164 (165)
56 smart00173 RAS Ras subfamily o 100.0 4.5E-33 9.8E-38 188.3 17.1 160 6-179 1-162 (164)
57 cd04128 Spg1 Spg1p. Spg1p (se 100.0 8.9E-33 1.9E-37 189.4 18.2 169 6-183 1-170 (182)
58 cd04177 RSR1 RSR1 subgroup. R 100.0 1.2E-32 2.5E-37 187.0 18.6 162 5-179 1-164 (168)
59 cd04116 Rab9 Rab9 subfamily. 100.0 1.1E-32 2.4E-37 187.5 18.3 161 3-177 3-169 (170)
60 cd00877 Ran Ran (Ras-related n 100.0 2.4E-32 5.3E-37 185.0 19.3 159 6-180 1-160 (166)
61 cd04109 Rab28 Rab28 subfamily. 100.0 1E-32 2.2E-37 194.0 18.2 162 6-181 1-168 (215)
62 cd01868 Rab11_like Rab11-like. 100.0 1.2E-32 2.6E-37 186.4 17.8 161 4-178 2-164 (165)
63 cd04145 M_R_Ras_like M-Ras/R-R 100.0 1.3E-32 2.7E-37 186.1 17.6 160 5-178 2-163 (164)
64 cd01873 RhoBTB RhoBTB subfamil 100.0 2.4E-32 5.1E-37 188.8 18.8 170 5-177 2-194 (195)
65 cd04103 Centaurin_gamma Centau 100.0 2.3E-32 5E-37 183.3 17.7 155 6-177 1-157 (158)
66 cd04113 Rab4 Rab4 subfamily. 100.0 2.7E-32 5.9E-37 184.0 17.4 158 6-177 1-160 (161)
67 PLN03110 Rab GTPase; Provision 100.0 3.3E-32 7.2E-37 191.4 18.5 164 4-181 11-176 (216)
68 cd01866 Rab2 Rab2 subfamily. 100.0 4E-32 8.8E-37 184.3 18.3 163 4-180 3-167 (168)
69 cd04108 Rab36_Rab34 Rab34/Rab3 100.0 4.1E-32 9E-37 184.4 18.0 162 7-180 2-166 (170)
70 cd04111 Rab39 Rab39 subfamily. 100.0 3.5E-32 7.6E-37 190.5 18.2 165 4-182 1-169 (211)
71 cd04118 Rab24 Rab24 subfamily. 100.0 1.1E-31 2.3E-36 186.2 20.2 166 6-181 1-168 (193)
72 smart00175 RAB Rab subfamily o 100.0 5.1E-32 1.1E-36 183.1 17.8 161 6-180 1-163 (164)
73 smart00176 RAN Ran (Ras-relate 100.0 5E-32 1.1E-36 187.6 17.4 155 11-181 1-156 (200)
74 cd04143 Rhes_like Rhes_like su 100.0 5.4E-32 1.2E-36 193.0 18.0 163 6-181 1-173 (247)
75 cd01860 Rab5_related Rab5-rela 100.0 8.6E-32 1.9E-36 181.9 17.8 160 5-178 1-162 (163)
76 KOG0086|consensus 100.0 8.5E-33 1.9E-37 175.4 11.9 164 4-181 8-173 (214)
77 cd04115 Rab33B_Rab33A Rab33B/R 100.0 1.2E-31 2.5E-36 182.4 18.1 160 5-178 2-168 (170)
78 cd01862 Rab7 Rab7 subfamily. 100.0 1.2E-31 2.5E-36 182.7 18.1 164 6-182 1-170 (172)
79 cd04146 RERG_RasL11_like RERG/ 100.0 5.9E-32 1.3E-36 183.0 16.3 159 7-179 1-164 (165)
80 PLN03118 Rab family protein; P 100.0 1.9E-31 4.2E-36 187.2 18.9 165 4-182 13-180 (211)
81 KOG0091|consensus 100.0 1.4E-32 2.9E-37 176.3 11.1 165 4-182 7-176 (213)
82 cd01861 Rab6 Rab6 subfamily. 100.0 2E-31 4.4E-36 179.7 17.5 158 6-177 1-160 (161)
83 PLN03108 Rab family protein; P 100.0 2.3E-31 5E-36 186.4 18.3 164 4-181 5-170 (210)
84 cd01863 Rab18 Rab18 subfamily. 100.0 5.4E-31 1.2E-35 177.6 18.4 157 6-177 1-160 (161)
85 KOG0088|consensus 100.0 1.3E-32 2.9E-37 175.5 9.8 166 3-182 11-178 (218)
86 cd01892 Miro2 Miro2 subfamily. 100.0 3E-31 6.6E-36 180.0 17.1 164 3-180 2-167 (169)
87 cd01893 Miro1 Miro1 subfamily. 100.0 2.4E-31 5.2E-36 180.2 16.5 164 6-180 1-165 (166)
88 KOG0095|consensus 100.0 3E-32 6.5E-37 172.3 11.1 164 5-182 7-172 (213)
89 cd04101 RabL4 RabL4 (Rab-like4 100.0 4E-31 8.6E-36 178.8 17.3 159 6-178 1-163 (164)
90 cd04139 RalA_RalB RalA/RalB su 100.0 5.7E-31 1.2E-35 177.9 17.7 160 6-179 1-162 (164)
91 cd04137 RheB Rheb (Ras Homolog 100.0 4.4E-31 9.5E-36 181.2 17.3 174 6-192 2-180 (180)
92 cd04148 RGK RGK subfamily. Th 100.0 8.5E-31 1.8E-35 184.7 18.1 161 6-182 1-166 (221)
93 cd04123 Rab21 Rab21 subfamily. 100.0 1.5E-30 3.1E-35 175.5 18.0 159 6-178 1-161 (162)
94 cd04149 Arf6 Arf6 subfamily. 100.0 3.5E-31 7.6E-36 179.5 13.1 156 3-176 7-167 (168)
95 PLN00223 ADP-ribosylation fact 100.0 4.7E-31 1E-35 180.8 13.2 161 3-181 15-180 (181)
96 smart00177 ARF ARF-like small 100.0 6.5E-31 1.4E-35 179.4 13.7 159 3-179 11-174 (175)
97 cd04114 Rab30 Rab30 subfamily. 100.0 7.5E-30 1.6E-34 173.4 18.7 161 4-178 6-168 (169)
98 PTZ00133 ADP-ribosylation fact 100.0 9E-31 2E-35 179.6 13.6 165 3-181 15-180 (182)
99 cd00876 Ras Ras family. The R 100.0 3.4E-30 7.4E-35 173.4 15.6 158 7-178 1-160 (160)
100 cd00154 Rab Rab family. Rab G 100.0 4.9E-30 1.1E-34 172.2 16.2 156 6-175 1-158 (159)
101 cd04150 Arf1_5_like Arf1-Arf5- 100.0 1.3E-30 2.9E-35 175.2 12.3 154 6-176 1-158 (159)
102 cd04158 ARD1 ARD1 subfamily. 100.0 3.8E-30 8.3E-35 174.7 14.6 158 7-182 1-164 (169)
103 cd04147 Ras_dva Ras-dva subfam 100.0 1.4E-29 3E-34 176.1 17.4 161 7-180 1-164 (198)
104 KOG0395|consensus 100.0 7.1E-30 1.5E-34 175.5 15.7 165 4-181 2-167 (196)
105 cd04152 Arl4_Arl7 Arl4/Arl7 su 100.0 2E-29 4.4E-34 173.2 15.3 164 4-183 2-174 (183)
106 cd04162 Arl9_Arfrp2_like Arl9/ 100.0 5E-30 1.1E-34 173.3 10.6 157 7-176 1-163 (164)
107 cd04154 Arl2 Arl2 subfamily. 100.0 4.6E-29 1E-33 170.1 14.9 157 2-176 11-172 (173)
108 KOG0081|consensus 100.0 9.4E-31 2E-35 167.2 5.2 164 5-182 9-184 (219)
109 PTZ00132 GTP-binding nuclear p 100.0 6.3E-28 1.4E-32 169.9 19.1 164 3-182 7-171 (215)
110 cd04153 Arl5_Arl8 Arl5/Arl8 su 100.0 5E-29 1.1E-33 170.0 12.3 154 4-176 14-173 (174)
111 KOG0083|consensus 100.0 2.1E-30 4.6E-35 161.0 4.4 159 10-182 2-163 (192)
112 cd04157 Arl6 Arl6 subfamily. 100.0 5.5E-29 1.2E-33 168.0 11.7 152 7-176 1-161 (162)
113 cd04151 Arl1 Arl1 subfamily. 100.0 8.1E-29 1.8E-33 166.5 12.4 151 7-176 1-157 (158)
114 PF00025 Arf: ADP-ribosylation 100.0 2.1E-28 4.5E-33 166.8 12.2 163 3-178 12-175 (175)
115 cd00879 Sar1 Sar1 subfamily. 100.0 2E-28 4.3E-33 169.4 11.5 158 3-178 17-190 (190)
116 cd04161 Arl2l1_Arl13_like Arl2 100.0 2.3E-28 5E-33 165.6 11.4 157 7-176 1-166 (167)
117 smart00178 SAR Sar1p-like memb 100.0 3.8E-28 8.3E-33 167.0 12.1 168 3-177 15-183 (184)
118 cd04160 Arfrp1 Arfrp1 subfamil 100.0 6.3E-28 1.4E-32 163.6 12.9 153 7-176 1-166 (167)
119 cd04156 ARLTS1 ARLTS1 subfamil 100.0 7.8E-28 1.7E-32 162.0 13.2 158 7-176 1-159 (160)
120 KOG0097|consensus 100.0 7.4E-28 1.6E-32 151.3 11.9 164 4-181 10-175 (215)
121 KOG0073|consensus 100.0 1.4E-27 3E-32 153.3 12.4 166 3-181 14-180 (185)
122 cd00878 Arf_Arl Arf (ADP-ribos 100.0 1.4E-27 3E-32 160.5 12.6 152 7-176 1-157 (158)
123 KOG0075|consensus 100.0 4.4E-28 9.6E-33 152.9 7.8 164 4-180 19-183 (186)
124 cd04102 RabL3 RabL3 (Rab-like3 99.9 1.1E-26 2.3E-31 160.9 14.7 150 6-165 1-176 (202)
125 cd01897 NOG NOG1 is a nucleola 99.9 1.7E-26 3.7E-31 156.7 14.8 156 6-178 1-167 (168)
126 PLN00023 GTP-binding protein; 99.9 3.4E-26 7.4E-31 165.7 17.0 143 3-155 19-191 (334)
127 cd04159 Arl10_like Arl10-like 99.9 6.6E-27 1.4E-31 157.0 12.2 157 7-176 1-158 (159)
128 cd01898 Obg Obg subfamily. Th 99.9 3.5E-26 7.6E-31 155.4 13.4 156 7-177 2-169 (170)
129 KOG0070|consensus 99.9 1.2E-26 2.6E-31 152.7 10.4 165 3-181 15-180 (181)
130 cd04155 Arl3 Arl3 subfamily. 99.9 3.7E-26 8E-31 155.8 13.3 160 3-176 12-172 (173)
131 PRK12299 obgE GTPase CgtA; Rev 99.9 5.1E-26 1.1E-30 168.2 14.2 162 6-182 159-331 (335)
132 cd01890 LepA LepA subfamily. 99.9 5.5E-26 1.2E-30 155.7 13.4 154 7-178 2-176 (179)
133 TIGR00231 small_GTP small GTP- 99.9 1.9E-25 4.2E-30 149.6 15.3 157 5-175 1-160 (161)
134 TIGR02528 EutP ethanolamine ut 99.9 6.3E-26 1.4E-30 149.8 10.9 135 7-175 2-141 (142)
135 PTZ00099 rab6; Provisional 99.9 6.9E-25 1.5E-29 149.3 16.3 142 28-183 3-146 (176)
136 TIGR00436 era GTP-binding prot 99.9 9.8E-26 2.1E-30 163.5 12.6 157 7-182 2-167 (270)
137 COG1100 GTPase SAR1 and relate 99.9 6.5E-25 1.4E-29 155.0 15.4 179 4-182 4-188 (219)
138 cd04171 SelB SelB subfamily. 99.9 1.6E-25 3.4E-30 151.3 11.4 154 6-176 1-163 (164)
139 PRK15494 era GTPase Era; Provi 99.9 1.1E-24 2.5E-29 162.1 14.3 158 4-182 51-219 (339)
140 cd01887 IF2_eIF5B IF2/eIF5B (i 99.9 1.7E-24 3.7E-29 146.8 13.9 158 7-179 2-166 (168)
141 PRK04213 GTP-binding protein; 99.9 4.2E-25 9.1E-30 154.1 10.5 157 4-183 8-196 (201)
142 cd01878 HflX HflX subfamily. 99.9 1.2E-24 2.6E-29 152.1 12.2 153 5-178 41-204 (204)
143 cd00882 Ras_like_GTPase Ras-li 99.9 4.6E-24 1E-28 141.9 13.9 154 10-175 1-156 (157)
144 TIGR02729 Obg_CgtA Obg family 99.9 2.8E-24 6E-29 159.0 12.8 157 6-178 158-328 (329)
145 cd04163 Era Era subfamily. Er 99.9 5.7E-24 1.2E-28 143.8 13.3 159 4-178 2-168 (168)
146 PRK03003 GTP-binding protein D 99.9 1E-24 2.3E-29 169.2 10.9 163 4-182 210-385 (472)
147 cd01894 EngA1 EngA1 subfamily. 99.9 2.6E-24 5.6E-29 144.2 11.4 147 9-178 1-157 (157)
148 cd04164 trmE TrmE (MnmE, ThdF, 99.9 6.5E-24 1.4E-28 142.3 12.7 146 6-178 2-156 (157)
149 cd01879 FeoB Ferrous iron tran 99.9 1.5E-23 3.2E-28 140.8 14.4 147 10-178 1-156 (158)
150 PF02421 FeoB_N: Ferrous iron 99.9 1E-24 2.2E-29 143.6 8.3 148 6-174 1-156 (156)
151 PF08477 Miro: Miro-like prote 99.9 2.3E-24 5E-29 138.2 9.7 114 7-120 1-119 (119)
152 PRK00089 era GTPase Era; Revie 99.9 7.1E-24 1.5E-28 155.7 13.5 164 1-181 1-173 (292)
153 TIGR03594 GTPase_EngA ribosome 99.9 4.2E-24 9E-29 164.8 12.3 160 4-181 171-346 (429)
154 cd00881 GTP_translation_factor 99.9 3.5E-24 7.6E-29 147.9 10.7 159 7-179 1-187 (189)
155 PRK03003 GTP-binding protein D 99.9 3.1E-24 6.7E-29 166.5 11.5 154 6-180 39-200 (472)
156 KOG4252|consensus 99.9 5.5E-26 1.2E-30 148.2 1.4 165 4-182 19-184 (246)
157 COG1159 Era GTPase [General fu 99.9 6.8E-24 1.5E-28 150.1 11.3 164 3-182 4-175 (298)
158 TIGR00450 mnmE_trmE_thdF tRNA 99.9 1.7E-23 3.6E-28 160.2 14.3 151 4-181 202-362 (442)
159 cd01895 EngA2 EngA2 subfamily. 99.9 2.9E-23 6.3E-28 141.3 14.0 156 5-177 2-173 (174)
160 TIGR03156 GTP_HflX GTP-binding 99.9 9.8E-24 2.1E-28 157.3 12.2 151 5-177 189-350 (351)
161 KOG0071|consensus 99.9 1.3E-23 2.9E-28 131.7 10.8 163 3-179 15-178 (180)
162 cd01891 TypA_BipA TypA (tyrosi 99.9 1.1E-23 2.4E-28 146.1 10.6 148 6-169 3-172 (194)
163 PRK12297 obgE GTPase CgtA; Rev 99.9 1.1E-22 2.4E-27 154.1 16.7 157 7-182 160-330 (424)
164 PRK15467 ethanolamine utilizat 99.9 5.4E-23 1.2E-27 137.9 13.4 142 7-181 3-149 (158)
165 PRK05291 trmE tRNA modificatio 99.9 1.9E-23 4.2E-28 160.6 12.3 148 4-180 214-371 (449)
166 cd01889 SelB_euk SelB subfamil 99.9 9.9E-24 2.2E-28 146.1 9.5 162 6-181 1-188 (192)
167 TIGR00487 IF-2 translation ini 99.9 1.2E-22 2.5E-27 160.0 15.7 162 3-177 85-248 (587)
168 KOG1673|consensus 99.9 1E-22 2.3E-27 129.9 12.4 170 4-182 19-189 (205)
169 cd04105 SR_beta Signal recogni 99.9 2.5E-23 5.5E-28 144.9 10.1 169 7-176 2-202 (203)
170 cd01881 Obg_like The Obg-like 99.9 5.6E-23 1.2E-27 140.4 11.4 153 10-177 1-175 (176)
171 cd01888 eIF2_gamma eIF2-gamma 99.9 3.7E-23 8.1E-28 144.2 10.3 164 6-181 1-201 (203)
172 PF00009 GTP_EFTU: Elongation 99.9 2E-23 4.2E-28 144.1 8.6 162 4-179 2-187 (188)
173 PRK00093 GTP-binding protein D 99.9 7.5E-23 1.6E-27 158.0 12.6 164 4-181 172-346 (435)
174 TIGR01393 lepA GTP-binding pro 99.9 1.7E-22 3.7E-27 159.7 13.8 159 6-182 4-183 (595)
175 PRK12298 obgE GTPase CgtA; Rev 99.9 2.4E-22 5.3E-27 151.5 13.0 161 7-181 161-335 (390)
176 CHL00189 infB translation init 99.9 2.6E-22 5.7E-27 160.3 13.7 163 4-178 243-409 (742)
177 TIGR03594 GTPase_EngA ribosome 99.9 1.3E-22 2.8E-27 156.5 11.5 154 7-181 1-162 (429)
178 PRK00093 GTP-binding protein D 99.9 2.5E-22 5.3E-27 155.2 11.9 150 6-178 2-161 (435)
179 PRK12296 obgE GTPase CgtA; Rev 99.9 4.9E-22 1.1E-26 152.5 13.2 161 6-182 160-343 (500)
180 PRK05306 infB translation init 99.9 7.3E-22 1.6E-26 159.0 14.8 161 3-177 288-450 (787)
181 PRK11058 GTPase HflX; Provisio 99.9 8.4E-22 1.8E-26 150.1 13.8 155 6-180 198-363 (426)
182 PRK09518 bifunctional cytidyla 99.9 4.3E-22 9.4E-27 161.1 12.8 158 4-181 449-623 (712)
183 cd00880 Era_like Era (E. coli 99.9 9.2E-22 2E-26 131.9 12.0 154 10-177 1-162 (163)
184 TIGR00475 selB selenocysteine- 99.9 6.7E-22 1.4E-26 156.2 12.5 158 6-182 1-169 (581)
185 COG1160 Predicted GTPases [Gen 99.9 7.9E-22 1.7E-26 146.9 12.1 167 4-182 177-354 (444)
186 PRK00454 engB GTP-binding prot 99.9 7.1E-22 1.5E-26 137.2 11.2 159 4-179 23-194 (196)
187 TIGR03598 GTPase_YsxC ribosome 99.9 2.3E-22 4.9E-27 137.8 8.4 149 3-168 16-179 (179)
188 TIGR00491 aIF-2 translation in 99.9 1.4E-21 3.1E-26 153.6 13.8 167 4-178 3-215 (590)
189 PRK09518 bifunctional cytidyla 99.9 9.6E-22 2.1E-26 159.2 13.0 155 5-180 275-437 (712)
190 KOG0072|consensus 99.9 1E-22 2.2E-27 128.3 5.7 164 4-181 17-181 (182)
191 cd04168 TetM_like Tet(M)-like 99.9 2.3E-21 5E-26 137.7 13.0 169 7-179 1-235 (237)
192 COG0486 ThdF Predicted GTPase 99.9 1.2E-21 2.5E-26 146.4 11.7 155 4-181 216-378 (454)
193 COG1160 Predicted GTPases [Gen 99.9 4.6E-22 1E-26 148.1 9.4 152 6-178 4-164 (444)
194 PRK09554 feoB ferrous iron tra 99.9 1E-20 2.2E-25 153.0 17.2 154 4-178 2-167 (772)
195 KOG1423|consensus 99.9 2.9E-21 6.3E-26 136.6 11.6 175 3-181 70-273 (379)
196 PRK12317 elongation factor 1-a 99.9 2.5E-21 5.5E-26 148.8 11.9 158 4-170 5-196 (425)
197 KOG1707|consensus 99.9 6.4E-22 1.4E-26 150.2 7.7 169 2-181 6-177 (625)
198 TIGR00483 EF-1_alpha translati 99.9 3E-21 6.4E-26 148.4 11.2 159 3-169 5-197 (426)
199 KOG0076|consensus 99.9 3.3E-22 7.2E-27 129.9 5.0 161 4-181 16-189 (197)
200 cd01884 EF_Tu EF-Tu subfamily. 99.9 4.2E-21 9.1E-26 132.5 10.5 150 5-167 2-171 (195)
201 PRK04004 translation initiatio 99.9 1.4E-20 2.9E-25 148.6 14.4 170 1-178 2-217 (586)
202 PRK05433 GTP-binding protein L 99.9 7.3E-21 1.6E-25 150.6 12.7 160 5-182 7-187 (600)
203 KOG0074|consensus 99.9 3E-21 6.5E-26 121.4 8.2 164 3-179 15-179 (185)
204 COG2229 Predicted GTPase [Gene 99.9 3E-20 6.5E-25 122.4 13.2 158 2-177 7-176 (187)
205 cd04166 CysN_ATPS CysN_ATPS su 99.9 1.6E-21 3.5E-26 136.5 7.7 153 7-170 1-185 (208)
206 KOG3883|consensus 99.9 9E-20 1.9E-24 116.3 14.5 166 4-183 8-179 (198)
207 TIGR00437 feoB ferrous iron tr 99.9 1.6E-20 3.5E-25 148.6 13.3 145 12-178 1-154 (591)
208 cd01896 DRG The developmentall 99.8 3.9E-20 8.5E-25 131.2 13.6 151 7-179 2-226 (233)
209 PRK10218 GTP-binding protein; 99.8 2.7E-20 5.8E-25 146.9 14.0 165 2-182 2-198 (607)
210 PF10662 PduV-EutP: Ethanolami 99.8 1.5E-20 3.3E-25 121.1 10.0 136 7-175 3-142 (143)
211 TIGR01394 TypA_BipA GTP-bindin 99.8 1.2E-20 2.6E-25 149.0 10.4 160 7-182 3-194 (594)
212 cd04165 GTPBP1_like GTPBP1-lik 99.8 3.2E-20 6.9E-25 130.7 11.1 166 7-176 1-220 (224)
213 PRK12736 elongation factor Tu; 99.8 3.9E-20 8.4E-25 140.7 11.1 167 3-182 10-204 (394)
214 PRK10512 selenocysteinyl-tRNA- 99.8 4.7E-20 1E-24 146.3 11.9 160 7-180 2-167 (614)
215 cd01886 EF-G Elongation factor 99.8 1.5E-19 3.2E-24 130.6 13.2 114 7-124 1-131 (270)
216 cd04169 RF3 RF3 subfamily. Pe 99.8 1.3E-19 2.7E-24 130.9 12.6 116 6-125 3-139 (267)
217 cd01883 EF1_alpha Eukaryotic e 99.8 7.3E-20 1.6E-24 129.0 10.5 154 7-168 1-194 (219)
218 cd04167 Snu114p Snu114p subfam 99.8 5.6E-20 1.2E-24 129.2 9.4 112 7-122 2-136 (213)
219 TIGR03680 eif2g_arch translati 99.8 7.1E-20 1.5E-24 139.7 10.7 166 4-181 3-198 (406)
220 cd04104 p47_IIGP_like p47 (47- 99.8 1.3E-19 2.9E-24 125.7 11.0 173 5-184 1-189 (197)
221 cd01876 YihA_EngB The YihA (En 99.8 1E-19 2.2E-24 123.2 10.0 154 7-177 1-169 (170)
222 PRK12735 elongation factor Tu; 99.8 1.8E-19 4E-24 137.1 11.9 163 4-179 11-203 (396)
223 TIGR00485 EF-Tu translation el 99.8 1.3E-19 2.8E-24 138.0 10.4 162 3-177 10-199 (394)
224 KOG1489|consensus 99.8 2.5E-19 5.4E-24 127.5 11.0 155 7-177 198-365 (366)
225 KOG0096|consensus 99.8 3.1E-19 6.6E-24 117.8 10.6 162 5-182 10-172 (216)
226 COG0218 Predicted GTPase [Gene 99.8 4.2E-19 9E-24 119.5 10.8 161 3-180 22-198 (200)
227 CHL00071 tufA elongation facto 99.8 2E-19 4.3E-24 137.4 10.5 150 4-166 11-180 (409)
228 PRK04000 translation initiatio 99.8 4.5E-19 9.7E-24 135.3 12.0 166 4-181 8-203 (411)
229 PRK00741 prfC peptide chain re 99.8 3.7E-19 7.9E-24 139.0 10.4 118 4-125 9-147 (526)
230 cd04170 EF-G_bact Elongation f 99.8 1.2E-18 2.5E-23 126.6 12.4 114 7-124 1-131 (268)
231 COG0532 InfB Translation initi 99.8 2.8E-18 6E-23 130.1 13.2 169 2-182 2-173 (509)
232 PRK00049 elongation factor Tu; 99.8 1.6E-18 3.4E-23 132.0 11.9 164 3-179 10-203 (396)
233 COG0370 FeoB Fe2+ transport sy 99.8 7.9E-18 1.7E-22 131.1 13.8 158 4-182 2-167 (653)
234 PLN03127 Elongation factor Tu; 99.8 5.4E-18 1.2E-22 130.3 12.3 166 3-181 59-254 (447)
235 PF04670 Gtr1_RagA: Gtr1/RagA 99.8 5.5E-19 1.2E-23 124.0 6.2 168 7-182 1-179 (232)
236 COG3596 Predicted GTPase [Gene 99.8 9.1E-19 2E-23 122.7 7.2 175 4-182 38-225 (296)
237 COG1163 DRG Predicted GTPase [ 99.8 2.8E-17 6E-22 117.6 14.4 156 6-182 64-292 (365)
238 PLN03126 Elongation factor Tu; 99.8 4.7E-18 1E-22 131.3 10.6 148 4-165 80-248 (478)
239 PTZ00141 elongation factor 1- 99.8 1.5E-17 3.3E-22 128.0 13.0 159 3-169 5-203 (446)
240 TIGR00503 prfC peptide chain r 99.8 1.9E-17 4.1E-22 129.5 13.5 116 4-123 10-146 (527)
241 TIGR02034 CysN sulfate adenyly 99.8 4.4E-18 9.5E-23 129.9 9.7 153 6-169 1-187 (406)
242 PLN00043 elongation factor 1-a 99.8 1.3E-17 2.9E-22 128.2 12.3 158 3-169 5-203 (447)
243 COG1084 Predicted GTPase [Gene 99.8 3E-17 6.5E-22 117.7 12.9 161 4-181 167-338 (346)
244 KOG4423|consensus 99.7 7.1E-20 1.5E-24 120.5 -1.1 165 6-182 26-197 (229)
245 PRK13351 elongation factor G; 99.7 6.9E-18 1.5E-22 136.8 10.0 117 4-124 7-140 (687)
246 TIGR00484 EF-G translation elo 99.7 3.8E-17 8.1E-22 132.3 13.9 116 6-125 11-143 (689)
247 PRK05124 cysN sulfate adenylyl 99.7 2.2E-17 4.8E-22 128.0 12.1 157 3-170 25-216 (474)
248 KOG0462|consensus 99.7 2.9E-17 6.4E-22 124.4 11.9 167 5-187 60-243 (650)
249 COG2262 HflX GTPases [General 99.7 5.3E-17 1.2E-21 119.7 12.1 156 5-181 192-358 (411)
250 cd01885 EF2 EF2 (for archaea a 99.7 1.9E-17 4E-22 116.3 9.0 112 7-122 2-138 (222)
251 COG0536 Obg Predicted GTPase [ 99.7 3.8E-17 8.3E-22 117.7 10.0 162 8-182 162-336 (369)
252 PTZ00327 eukaryotic translatio 99.7 3.2E-17 6.8E-22 125.9 9.8 165 4-181 33-235 (460)
253 KOG0077|consensus 99.7 2.2E-18 4.7E-23 111.4 1.9 169 5-177 20-191 (193)
254 PF01926 MMR_HSR1: 50S ribosom 99.7 2.5E-17 5.5E-22 104.9 6.8 105 7-118 1-116 (116)
255 PRK12739 elongation factor G; 99.7 6.7E-17 1.5E-21 130.8 10.7 116 5-124 8-140 (691)
256 PRK05506 bifunctional sulfate 99.7 4E-17 8.6E-22 131.1 9.3 155 4-169 23-211 (632)
257 cd01899 Ygr210 Ygr210 subfamil 99.7 2.6E-16 5.6E-21 115.9 12.6 81 8-88 1-111 (318)
258 PF09439 SRPRB: Signal recogni 99.7 3.4E-18 7.5E-23 115.1 2.2 120 4-126 2-129 (181)
259 PRK00007 elongation factor G; 99.7 1.7E-16 3.8E-21 128.4 11.5 116 6-125 11-143 (693)
260 KOG1191|consensus 99.7 1.5E-16 3.3E-21 119.3 10.3 169 4-182 267-453 (531)
261 cd01852 AIG1 AIG1 (avrRpt2-ind 99.7 5.6E-16 1.2E-20 107.6 12.5 165 6-180 1-185 (196)
262 cd01850 CDC_Septin CDC/Septin. 99.7 7.9E-16 1.7E-20 111.7 12.7 116 4-123 3-157 (276)
263 KOG0090|consensus 99.7 1.1E-16 2.4E-21 108.0 6.7 168 5-177 38-237 (238)
264 KOG1145|consensus 99.7 1.3E-15 2.8E-20 115.7 12.5 166 3-180 151-317 (683)
265 COG5256 TEF1 Translation elong 99.7 3.4E-16 7.4E-21 115.5 8.0 157 4-169 6-201 (428)
266 PRK09866 hypothetical protein; 99.6 9.2E-15 2E-19 114.1 15.1 109 54-176 231-350 (741)
267 KOG1490|consensus 99.6 4.5E-16 9.7E-21 117.1 7.3 168 3-184 166-346 (620)
268 COG0481 LepA Membrane GTPase L 99.6 4.5E-15 9.8E-20 111.2 12.1 160 6-183 10-190 (603)
269 cd00066 G-alpha G protein alph 99.6 5.5E-15 1.2E-19 109.4 11.7 134 49-182 157-314 (317)
270 COG4917 EutP Ethanolamine util 99.6 1.3E-15 2.9E-20 94.2 6.9 137 7-176 3-143 (148)
271 PRK12740 elongation factor G; 99.6 1.2E-15 2.7E-20 123.5 8.8 111 11-125 1-128 (668)
272 PRK09602 translation-associate 99.6 1.3E-14 2.7E-19 110.0 13.1 82 6-87 2-113 (396)
273 KOG3905|consensus 99.6 4.9E-15 1.1E-19 106.2 9.9 175 5-181 52-292 (473)
274 KOG0461|consensus 99.6 8.5E-15 1.9E-19 105.9 10.6 175 3-185 5-199 (522)
275 PRK14845 translation initiatio 99.6 1.4E-14 3.1E-19 119.9 12.9 160 16-179 472-673 (1049)
276 PRK13768 GTPase; Provisional 99.6 4.6E-15 1E-19 106.5 8.1 127 54-180 98-248 (253)
277 COG1217 TypA Predicted membran 99.6 4.4E-14 9.6E-19 105.7 11.9 164 5-184 5-200 (603)
278 cd01853 Toc34_like Toc34-like 99.6 1.7E-14 3.7E-19 103.0 9.4 123 3-126 29-166 (249)
279 smart00275 G_alpha G protein a 99.6 3.9E-14 8.6E-19 105.7 11.3 133 50-182 181-337 (342)
280 TIGR00490 aEF-2 translation el 99.6 7.9E-15 1.7E-19 119.3 7.0 115 5-123 19-152 (720)
281 TIGR00991 3a0901s02IAP34 GTP-b 99.5 4.3E-14 9.3E-19 102.6 9.4 119 3-124 36-168 (313)
282 PF04548 AIG1: AIG1 family; I 99.5 7.8E-14 1.7E-18 97.9 9.1 168 6-182 1-189 (212)
283 KOG1532|consensus 99.5 3.4E-14 7.4E-19 99.8 6.9 132 51-182 114-267 (366)
284 PF05783 DLIC: Dynein light in 99.5 1.8E-13 4E-18 105.2 11.2 173 5-182 25-267 (472)
285 PRK09435 membrane ATPase/prote 99.5 1.9E-13 4.1E-18 101.0 10.8 108 51-179 147-260 (332)
286 TIGR00101 ureG urease accessor 99.5 7.1E-13 1.5E-17 91.9 12.5 104 53-179 92-196 (199)
287 KOG0082|consensus 99.5 1.3E-13 2.9E-18 101.3 9.1 137 47-184 189-349 (354)
288 KOG1144|consensus 99.5 2E-13 4.4E-18 107.2 9.9 176 4-183 474-691 (1064)
289 PTZ00416 elongation factor 2; 99.5 7.2E-14 1.6E-18 115.2 7.6 114 5-122 19-157 (836)
290 PRK07560 elongation factor EF- 99.5 2E-13 4.4E-18 111.4 9.5 115 5-123 20-153 (731)
291 PLN00116 translation elongatio 99.5 8.2E-14 1.8E-18 115.0 7.2 114 5-122 19-163 (843)
292 PF03029 ATP_bind_1: Conserved 99.5 8.1E-15 1.8E-19 104.0 1.1 124 54-178 92-236 (238)
293 cd01882 BMS1 Bms1. Bms1 is an 99.5 3.1E-13 6.8E-18 95.6 8.5 142 4-165 38-182 (225)
294 COG5257 GCD11 Translation init 99.5 2.2E-13 4.8E-18 97.7 7.3 168 4-183 9-206 (415)
295 COG2895 CysN GTPases - Sulfate 99.5 4.4E-13 9.6E-18 97.3 8.7 154 4-168 5-192 (431)
296 COG4108 PrfC Peptide chain rel 99.5 3.2E-13 6.9E-18 100.5 8.1 117 4-124 11-148 (528)
297 TIGR00073 hypB hydrogenase acc 99.4 3.4E-12 7.4E-17 89.3 10.9 150 5-177 22-205 (207)
298 COG0378 HypB Ni2+-binding GTPa 99.4 1.8E-12 3.8E-17 87.2 8.9 150 4-178 11-200 (202)
299 KOG0458|consensus 99.4 2.6E-12 5.7E-17 98.6 10.9 156 4-169 176-372 (603)
300 TIGR02836 spore_IV_A stage IV 99.4 4.9E-12 1.1E-16 94.5 12.0 155 5-176 17-234 (492)
301 PF05049 IIGP: Interferon-indu 99.4 1.6E-13 3.5E-18 102.1 3.8 170 3-184 33-223 (376)
302 COG0480 FusA Translation elong 99.4 8.9E-13 1.9E-17 105.6 7.6 119 4-126 9-145 (697)
303 COG3276 SelB Selenocysteine-sp 99.4 1.3E-12 2.7E-17 97.6 7.8 158 7-179 2-162 (447)
304 TIGR00157 ribosome small subun 99.4 1.8E-12 3.8E-17 92.8 8.4 96 64-176 24-120 (245)
305 PTZ00258 GTP-binding protein; 99.4 1.5E-11 3.2E-16 92.7 13.0 84 4-87 20-126 (390)
306 KOG1707|consensus 99.4 2.3E-11 5E-16 93.6 13.7 163 3-182 423-586 (625)
307 KOG3886|consensus 99.4 1.4E-12 3.1E-17 89.5 6.4 125 4-128 3-135 (295)
308 PF00350 Dynamin_N: Dynamin fa 99.4 1.5E-12 3.3E-17 88.2 5.7 63 54-119 102-168 (168)
309 smart00010 small_GTPase Small 99.3 1.7E-11 3.7E-16 78.7 10.1 113 6-168 1-115 (124)
310 KOG1486|consensus 99.3 6.6E-11 1.4E-15 82.6 12.5 92 4-97 61-160 (364)
311 TIGR00750 lao LAO/AO transport 99.3 1.3E-11 2.8E-16 91.0 8.7 110 52-179 126-238 (300)
312 PF00735 Septin: Septin; Inte 99.3 1.3E-10 2.9E-15 84.5 13.3 119 4-126 3-159 (281)
313 PF00503 G-alpha: G-protein al 99.3 4.2E-11 9.2E-16 91.5 10.8 128 51-178 234-389 (389)
314 COG0050 TufB GTPases - transla 99.3 1E-11 2.2E-16 88.4 6.5 167 4-184 11-206 (394)
315 PF03308 ArgK: ArgK protein; 99.3 2.4E-11 5.1E-16 85.6 8.1 107 53-180 122-231 (266)
316 COG1703 ArgK Putative periplas 99.3 1.2E-11 2.7E-16 88.3 6.1 115 52-182 143-257 (323)
317 KOG3887|consensus 99.3 2.8E-11 6.1E-16 83.9 7.6 170 4-181 26-204 (347)
318 KOG1143|consensus 99.3 6.7E-11 1.5E-15 86.9 9.7 167 4-174 166-383 (591)
319 COG5258 GTPBP1 GTPase [General 99.2 7.3E-11 1.6E-15 86.9 9.6 169 3-175 115-335 (527)
320 PRK10463 hydrogenase nickel in 99.2 9.3E-11 2E-15 84.8 9.8 58 109-177 230-287 (290)
321 KOG0463|consensus 99.2 3.8E-11 8.2E-16 88.3 6.2 167 3-175 131-354 (641)
322 KOG0705|consensus 99.2 4.9E-11 1.1E-15 91.2 7.0 165 4-184 29-194 (749)
323 TIGR00993 3a0901s04IAP86 chlor 99.2 1.9E-10 4.1E-15 90.8 10.3 119 4-124 117-251 (763)
324 KOG0468|consensus 99.2 1.3E-10 2.8E-15 90.9 8.3 115 4-122 127-262 (971)
325 COG0012 Predicted GTPase, prob 99.2 9.7E-10 2.1E-14 81.2 12.1 84 5-88 2-109 (372)
326 smart00053 DYNc Dynamin, GTPas 99.2 2.3E-10 5.1E-15 81.1 8.3 69 53-124 125-207 (240)
327 KOG2486|consensus 99.1 7.1E-11 1.5E-15 83.5 5.2 162 3-176 134-313 (320)
328 cd01855 YqeH YqeH. YqeH is an 99.1 3.4E-10 7.4E-15 78.2 8.1 95 66-179 24-125 (190)
329 KOG0410|consensus 99.1 3.6E-11 7.7E-16 86.7 2.9 150 6-181 179-343 (410)
330 KOG0465|consensus 99.1 4.9E-10 1.1E-14 86.8 7.8 119 5-127 39-174 (721)
331 PRK09601 GTP-binding protein Y 99.0 1E-09 2.2E-14 82.0 8.0 82 6-87 3-107 (364)
332 cd01857 HSR1_MMR1 HSR1/MMR1. 99.0 5.8E-10 1.3E-14 73.4 6.0 54 7-63 85-138 (141)
333 KOG1954|consensus 99.0 7E-10 1.5E-14 81.5 6.8 116 5-123 58-225 (532)
334 PRK00098 GTPase RsgA; Reviewed 99.0 1.1E-09 2.5E-14 80.6 8.0 88 73-176 77-164 (298)
335 KOG0085|consensus 99.0 6.7E-11 1.5E-15 81.6 1.2 136 48-183 194-353 (359)
336 cd01859 MJ1464 MJ1464. This f 99.0 6.7E-10 1.5E-14 74.3 5.8 94 68-180 4-97 (156)
337 COG5019 CDC3 Septin family pro 99.0 5.8E-09 1.3E-13 76.7 10.9 120 4-127 22-180 (373)
338 cd01900 YchF YchF subfamily. 99.0 8.8E-10 1.9E-14 79.7 6.5 80 8-87 1-103 (274)
339 cd04178 Nucleostemin_like Nucl 99.0 1.4E-09 3.1E-14 73.7 6.5 55 5-62 117-171 (172)
340 KOG1547|consensus 99.0 1.2E-08 2.6E-13 71.0 10.8 116 4-123 45-198 (336)
341 cd01858 NGP_1 NGP-1. Autoanti 99.0 1.6E-09 3.4E-14 72.6 6.5 56 4-62 101-156 (157)
342 KOG0460|consensus 99.0 2.4E-09 5.1E-14 77.9 7.7 168 4-184 53-250 (449)
343 cd01858 NGP_1 NGP-1. Autoanti 98.9 5.7E-09 1.2E-13 69.9 7.8 91 73-179 5-95 (157)
344 KOG2655|consensus 98.9 4.3E-08 9.3E-13 72.7 12.5 119 4-126 20-175 (366)
345 TIGR03597 GTPase_YqeH ribosome 98.9 5.7E-09 1.2E-13 78.9 7.8 96 63-177 50-151 (360)
346 PRK12289 GTPase RsgA; Reviewed 98.9 8.6E-09 1.9E-13 77.3 8.7 89 71-177 84-173 (352)
347 KOG1487|consensus 98.9 1.2E-08 2.5E-13 71.8 8.2 85 6-91 60-151 (358)
348 cd01854 YjeQ_engC YjeQ/EngC. 98.9 8.2E-09 1.8E-13 75.7 7.8 88 71-176 73-161 (287)
349 KOG0099|consensus 98.9 4E-09 8.8E-14 74.2 5.7 133 48-184 197-374 (379)
350 cd01856 YlqF YlqF. Proteins o 98.9 6.6E-09 1.4E-13 70.6 6.5 57 4-63 114-170 (171)
351 KOG0448|consensus 98.9 1.2E-08 2.6E-13 80.3 8.2 120 3-126 107-278 (749)
352 KOG0464|consensus 98.9 5.4E-10 1.2E-14 83.4 0.5 115 6-124 38-169 (753)
353 TIGR03596 GTPase_YlqF ribosome 98.9 1E-08 2.3E-13 74.9 7.1 57 4-63 117-173 (276)
354 PRK09563 rbgA GTPase YlqF; Rev 98.8 1.5E-08 3.4E-13 74.4 7.5 57 4-63 120-176 (287)
355 PRK12288 GTPase RsgA; Reviewed 98.8 2E-08 4.4E-13 75.3 7.6 90 74-178 118-207 (347)
356 COG1161 Predicted GTPases [Gen 98.8 1.3E-08 2.7E-13 75.8 6.3 58 3-63 130-187 (322)
357 cd01855 YqeH YqeH. YqeH is an 98.8 1.4E-08 3E-13 70.2 5.6 55 5-62 127-189 (190)
358 cd01859 MJ1464 MJ1464. This f 98.8 3.2E-08 7E-13 66.2 6.7 55 4-62 100-155 (156)
359 cd01849 YlqF_related_GTPase Yl 98.8 2.4E-08 5.2E-13 66.8 5.9 56 4-62 99-154 (155)
360 KOG0466|consensus 98.8 5.4E-09 1.2E-13 75.1 2.9 118 54-183 126-245 (466)
361 COG1618 Predicted nucleotide k 98.7 5.7E-07 1.2E-11 59.1 11.7 115 1-121 1-142 (179)
362 cd01849 YlqF_related_GTPase Yl 98.7 6.1E-08 1.3E-12 64.8 7.6 83 78-178 1-84 (155)
363 TIGR00092 GTP-binding protein 98.7 3E-08 6.4E-13 74.3 6.5 83 6-88 3-109 (368)
364 KOG0467|consensus 98.7 2.8E-08 6.1E-13 79.1 6.3 113 5-121 9-136 (887)
365 COG5192 BMS1 GTP-binding prote 98.7 1.8E-07 3.8E-12 72.8 9.3 141 4-163 68-210 (1077)
366 KOG0447|consensus 98.6 7.6E-07 1.6E-11 69.1 11.4 69 54-124 413-494 (980)
367 KOG1491|consensus 98.6 7.2E-08 1.6E-12 70.3 5.6 87 4-90 19-128 (391)
368 PRK12288 GTPase RsgA; Reviewed 98.6 7.8E-08 1.7E-12 72.2 5.9 58 7-67 207-271 (347)
369 KOG0459|consensus 98.6 2.6E-08 5.7E-13 74.1 3.3 164 3-172 77-279 (501)
370 PRK10416 signal recognition pa 98.6 2.1E-07 4.4E-12 69.2 7.9 96 51-171 195-302 (318)
371 PRK12289 GTPase RsgA; Reviewed 98.6 8.1E-08 1.8E-12 72.1 5.8 57 7-66 174-237 (352)
372 PF03193 DUF258: Protein of un 98.6 3.3E-08 7.1E-13 65.7 3.1 59 6-67 36-101 (161)
373 cd01856 YlqF YlqF. Proteins o 98.6 4.2E-07 9.2E-12 61.7 8.5 88 70-178 13-100 (171)
374 cd01851 GBP Guanylate-binding 98.6 1.8E-07 3.9E-12 66.3 6.4 84 5-88 7-103 (224)
375 PRK13796 GTPase YqeH; Provisio 98.5 9.4E-07 2E-11 67.1 9.8 88 75-177 67-157 (365)
376 TIGR03348 VI_IcmF type VI secr 98.5 2.3E-07 5.1E-12 79.9 7.2 112 8-123 114-257 (1169)
377 PRK14974 cell division protein 98.5 1.4E-07 3E-12 70.4 5.1 96 52-172 222-323 (336)
378 cd01857 HSR1_MMR1 HSR1/MMR1. 98.5 3.6E-07 7.8E-12 60.1 6.5 77 73-166 8-84 (141)
379 TIGR00064 ftsY signal recognit 98.5 2E-07 4.3E-12 67.8 5.7 96 51-171 153-260 (272)
380 TIGR00157 ribosome small subun 98.5 2.2E-07 4.8E-12 66.7 5.7 58 6-67 121-185 (245)
381 KOG1534|consensus 98.5 1.2E-07 2.6E-12 64.8 3.7 73 109-181 164-253 (273)
382 TIGR03596 GTPase_YlqF ribosome 98.5 7.2E-07 1.6E-11 65.3 7.9 91 70-181 15-105 (276)
383 PF09547 Spore_IV_A: Stage IV 98.5 6.8E-06 1.5E-10 62.3 12.3 154 5-175 17-233 (492)
384 cd01854 YjeQ_engC YjeQ/EngC. 98.4 3.6E-07 7.8E-12 67.2 4.6 59 6-67 162-227 (287)
385 PRK00098 GTPase RsgA; Reviewed 98.4 7.4E-07 1.6E-11 65.9 6.1 58 6-66 165-229 (298)
386 PRK13796 GTPase YqeH; Provisio 98.4 4.8E-07 1E-11 68.7 5.2 55 6-63 161-220 (365)
387 COG1162 Predicted GTPases [Gen 98.4 6E-07 1.3E-11 65.2 5.3 58 7-67 166-230 (301)
388 TIGR03597 GTPase_YqeH ribosome 98.4 7.5E-07 1.6E-11 67.5 6.1 111 6-123 155-280 (360)
389 PRK09563 rbgA GTPase YlqF; Rev 98.4 2.7E-06 5.9E-11 62.6 8.5 91 70-181 18-108 (287)
390 KOG1424|consensus 98.4 4.4E-07 9.5E-12 69.7 4.3 56 5-63 314-369 (562)
391 cd03112 CobW_like The function 98.4 1.7E-06 3.6E-11 58.0 6.6 21 8-28 3-23 (158)
392 PRK01889 GTPase RsgA; Reviewed 98.3 7.5E-06 1.6E-10 62.0 8.6 84 74-175 110-193 (356)
393 PF03266 NTPase_1: NTPase; In 98.3 5.8E-06 1.3E-10 55.9 7.2 107 7-119 1-135 (168)
394 TIGR01425 SRP54_euk signal rec 98.2 1.3E-06 2.9E-11 67.0 4.4 66 52-123 182-253 (429)
395 KOG0469|consensus 98.2 1.5E-06 3.3E-11 66.9 4.6 113 6-122 20-163 (842)
396 KOG1533|consensus 98.2 2.5E-06 5.4E-11 59.5 4.5 121 53-176 97-250 (290)
397 KOG3859|consensus 98.2 3.4E-06 7.4E-11 60.3 5.1 117 4-124 41-191 (406)
398 PF06858 NOG1: Nucleolar GTP-b 98.2 4.8E-06 1E-10 44.9 4.3 44 76-120 13-58 (58)
399 PRK11889 flhF flagellar biosyn 98.2 6.1E-06 1.3E-10 62.5 6.5 23 5-27 241-263 (436)
400 PRK12727 flagellar biosynthesi 98.2 1.5E-05 3.2E-10 62.7 8.6 161 6-190 351-551 (559)
401 PF00448 SRP54: SRP54-type pro 98.1 6.5E-07 1.4E-11 62.0 0.4 64 53-123 84-154 (196)
402 PRK14722 flhF flagellar biosyn 98.1 2.6E-05 5.7E-10 59.1 8.9 23 6-28 138-160 (374)
403 cd03114 ArgK-like The function 98.1 9.6E-06 2.1E-10 53.7 5.8 58 52-120 91-148 (148)
404 PRK00771 signal recognition pa 98.1 6.4E-06 1.4E-10 63.7 5.0 64 53-123 176-246 (437)
405 PRK10867 signal recognition pa 98.1 7.6E-06 1.6E-10 63.2 5.1 22 5-26 100-121 (433)
406 PRK14721 flhF flagellar biosyn 98.0 4.4E-05 9.5E-10 58.8 8.8 22 6-27 192-213 (420)
407 KOG2484|consensus 98.0 5.2E-06 1.1E-10 62.1 3.6 57 4-63 251-307 (435)
408 PF02492 cobW: CobW/HypB/UreG, 98.0 4.2E-06 9.2E-11 57.2 2.9 67 52-124 84-156 (178)
409 PRK14723 flhF flagellar biosyn 98.0 2.8E-05 6E-10 63.7 7.7 22 7-28 187-208 (767)
410 COG1162 Predicted GTPases [Gen 98.0 6.8E-05 1.5E-09 54.7 8.9 92 73-179 76-167 (301)
411 COG0523 Putative GTPases (G3E 98.0 0.00011 2.4E-09 54.7 10.0 23 8-30 4-26 (323)
412 COG1419 FlhF Flagellar GTP-bin 98.0 5.7E-05 1.2E-09 57.2 8.4 112 5-123 203-352 (407)
413 cd04178 Nucleostemin_like Nucl 98.0 3.5E-05 7.7E-10 52.3 6.5 44 78-123 1-44 (172)
414 TIGR00959 ffh signal recogniti 97.9 2.1E-05 4.6E-10 60.7 5.8 66 52-123 182-253 (428)
415 PRK12726 flagellar biosynthesi 97.9 2.9E-05 6.2E-10 58.7 6.1 23 5-27 206-228 (407)
416 KOG4273|consensus 97.9 0.00042 9.1E-09 49.2 11.0 173 5-181 4-224 (418)
417 PRK06995 flhF flagellar biosyn 97.9 0.00011 2.4E-09 57.6 9.0 21 7-27 258-278 (484)
418 PRK13695 putative NTPase; Prov 97.9 0.00039 8.4E-09 47.4 10.6 23 6-28 1-23 (174)
419 COG0563 Adk Adenylate kinase a 97.9 1.3E-05 2.7E-10 54.7 3.0 23 6-28 1-23 (178)
420 PF13207 AAA_17: AAA domain; P 97.9 1.3E-05 2.8E-10 51.1 2.9 22 7-28 1-22 (121)
421 cd03115 SRP The signal recogni 97.9 2.8E-05 6.1E-10 52.9 4.6 66 52-123 82-153 (173)
422 COG3523 IcmF Type VI protein s 97.8 9.3E-05 2E-09 63.3 8.1 110 9-123 129-270 (1188)
423 PRK12724 flagellar biosynthesi 97.8 6.9E-05 1.5E-09 57.4 6.5 22 6-27 224-245 (432)
424 PRK08118 topology modulation p 97.8 1.8E-05 3.8E-10 53.6 3.0 23 6-28 2-24 (167)
425 PRK12723 flagellar biosynthesi 97.8 0.00026 5.7E-09 54.1 9.5 113 5-123 174-326 (388)
426 PRK05480 uridine/cytidine kina 97.8 2.3E-05 5.1E-10 55.0 3.6 28 1-28 2-29 (209)
427 cd03110 Fer4_NifH_child This p 97.8 0.00032 6.9E-09 47.9 9.1 66 51-122 91-156 (179)
428 COG3640 CooC CO dehydrogenase 97.8 0.00016 3.5E-09 50.7 7.4 62 54-122 135-198 (255)
429 PRK05703 flhF flagellar biosyn 97.8 7.4E-05 1.6E-09 57.9 6.3 21 7-27 223-243 (424)
430 PRK07261 topology modulation p 97.8 2.4E-05 5.1E-10 53.2 3.0 23 6-28 1-23 (171)
431 PRK14737 gmk guanylate kinase; 97.8 3.1E-05 6.7E-10 53.3 3.6 24 6-29 5-28 (186)
432 KOG2485|consensus 97.7 4.3E-05 9.4E-10 55.6 4.3 58 4-62 142-205 (335)
433 PF13555 AAA_29: P-loop contai 97.7 3.3E-05 7.3E-10 42.7 2.9 24 7-30 25-48 (62)
434 PRK06731 flhF flagellar biosyn 97.7 9.3E-05 2E-09 53.8 5.9 66 52-123 154-225 (270)
435 COG0194 Gmk Guanylate kinase [ 97.7 3.2E-05 6.9E-10 52.3 2.9 24 6-29 5-28 (191)
436 PF13671 AAA_33: AAA domain; P 97.7 3.1E-05 6.6E-10 50.9 2.8 21 8-28 2-22 (143)
437 PRK11537 putative GTP-binding 97.7 0.00036 7.8E-09 52.1 8.5 21 8-28 7-27 (318)
438 cd02019 NK Nucleoside/nucleoti 97.7 5.1E-05 1.1E-09 43.3 2.9 22 8-29 2-23 (69)
439 PRK14738 gmk guanylate kinase; 97.6 6.4E-05 1.4E-09 52.7 3.9 26 4-29 12-37 (206)
440 PF13521 AAA_28: AAA domain; P 97.6 3.9E-05 8.6E-10 51.6 2.4 22 7-28 1-22 (163)
441 COG1136 SalX ABC-type antimicr 97.6 6.6E-05 1.4E-09 52.8 3.5 24 8-31 34-57 (226)
442 COG1126 GlnQ ABC-type polar am 97.6 7E-05 1.5E-09 51.9 3.5 26 7-32 30-55 (240)
443 KOG0780|consensus 97.6 4.6E-05 1E-09 57.1 2.8 97 5-101 101-238 (483)
444 cd01983 Fer4_NifH The Fer4_Nif 97.6 0.00039 8.4E-09 42.1 6.5 69 8-89 2-71 (99)
445 PRK14530 adenylate kinase; Pro 97.6 6.4E-05 1.4E-09 53.0 3.2 23 5-27 3-25 (215)
446 KOG2423|consensus 97.6 6.9E-05 1.5E-09 56.4 3.3 85 2-92 304-390 (572)
447 PF04665 Pox_A32: Poxvirus A32 97.5 7.9E-05 1.7E-09 53.0 3.1 27 3-29 11-37 (241)
448 KOG3347|consensus 97.5 7.2E-05 1.6E-09 48.7 2.6 25 3-27 5-29 (176)
449 COG1116 TauB ABC-type nitrate/ 97.5 0.0001 2.2E-09 52.3 3.5 25 8-32 32-56 (248)
450 PRK14531 adenylate kinase; Pro 97.5 8.9E-05 1.9E-09 50.9 3.2 24 5-28 2-25 (183)
451 PRK01889 GTPase RsgA; Reviewed 97.5 0.00011 2.4E-09 55.8 3.8 26 6-31 196-221 (356)
452 PRK06217 hypothetical protein; 97.5 9E-05 1.9E-09 50.9 3.0 23 6-28 2-24 (183)
453 cd02038 FleN-like FleN is a me 97.5 0.00021 4.6E-09 46.8 4.7 106 9-121 4-109 (139)
454 COG0541 Ffh Signal recognition 97.5 7E-05 1.5E-09 57.0 2.6 92 4-95 99-231 (451)
455 PRK00300 gmk guanylate kinase; 97.5 0.00012 2.5E-09 51.3 3.4 29 1-29 1-29 (205)
456 PF00005 ABC_tran: ABC transpo 97.5 9.4E-05 2E-09 48.2 2.8 24 7-30 13-36 (137)
457 COG3840 ThiQ ABC-type thiamine 97.5 0.00011 2.5E-09 49.6 2.9 25 7-31 27-51 (231)
458 cd00071 GMPK Guanosine monopho 97.5 0.00012 2.5E-09 47.9 2.9 21 8-28 2-22 (137)
459 PRK03839 putative kinase; Prov 97.4 0.00012 2.5E-09 50.2 3.0 22 7-28 2-23 (180)
460 PF13238 AAA_18: AAA domain; P 97.4 0.00012 2.6E-09 47.0 2.8 21 8-28 1-21 (129)
461 COG3839 MalK ABC-type sugar tr 97.4 0.00013 2.7E-09 54.5 3.1 25 8-32 32-56 (338)
462 PF00004 AAA: ATPase family as 97.4 0.00014 3.1E-09 46.8 3.0 22 8-29 1-22 (132)
463 TIGR03263 guanyl_kin guanylate 97.4 0.00022 4.7E-09 48.8 4.0 23 7-29 3-25 (180)
464 TIGR02322 phosphon_PhnN phosph 97.4 0.00013 2.9E-09 49.8 2.9 23 7-29 3-25 (179)
465 cd00820 PEPCK_HprK Phosphoenol 97.4 0.00014 3E-09 45.1 2.7 20 7-26 17-36 (107)
466 PTZ00088 adenylate kinase 1; P 97.4 0.00016 3.5E-09 51.4 3.2 25 4-28 5-29 (229)
467 smart00382 AAA ATPases associa 97.4 0.00016 3.5E-09 46.8 3.1 27 6-32 3-29 (148)
468 PRK08233 hypothetical protein; 97.4 0.00018 3.8E-09 49.3 3.3 24 5-28 3-26 (182)
469 PF03205 MobB: Molybdopterin g 97.4 0.00015 3.4E-09 47.5 2.9 23 7-29 2-24 (140)
470 PRK10078 ribose 1,5-bisphospho 97.4 0.00014 3.1E-09 50.1 2.9 23 7-29 4-26 (186)
471 cd02023 UMPK Uridine monophosp 97.4 0.00015 3.3E-09 50.4 2.9 21 8-28 2-22 (198)
472 PRK14532 adenylate kinase; Pro 97.4 0.00016 3.6E-09 49.8 3.0 22 7-28 2-23 (188)
473 PRK14731 coaE dephospho-CoA ki 97.4 0.00022 4.8E-09 50.0 3.6 28 1-28 1-28 (208)
474 TIGR00235 udk uridine kinase. 97.4 0.00021 4.6E-09 50.1 3.4 25 4-28 5-29 (207)
475 PRK10751 molybdopterin-guanine 97.3 0.00022 4.9E-09 48.2 3.3 25 5-29 6-30 (173)
476 TIGR01360 aden_kin_iso1 adenyl 97.3 0.00018 3.9E-09 49.5 2.9 21 7-27 5-25 (188)
477 PRK13949 shikimate kinase; Pro 97.3 0.0002 4.3E-09 48.5 3.0 22 7-28 3-24 (169)
478 cd01130 VirB11-like_ATPase Typ 97.3 0.0002 4.4E-09 49.3 3.0 25 5-29 25-49 (186)
479 TIGR00150 HI0065_YjeE ATPase, 97.3 0.00053 1.2E-08 44.3 4.7 23 7-29 24-46 (133)
480 cd03238 ABC_UvrA The excision 97.3 0.00021 4.5E-09 48.7 3.0 21 6-26 22-42 (176)
481 cd03222 ABC_RNaseL_inhibitor T 97.3 0.00026 5.7E-09 48.3 3.5 25 7-31 27-51 (177)
482 cd01428 ADK Adenylate kinase ( 97.3 0.00019 4.2E-09 49.6 2.9 22 7-28 1-22 (194)
483 cd02025 PanK Pantothenate kina 97.3 0.00018 3.9E-09 50.9 2.8 21 8-28 2-22 (220)
484 PRK02496 adk adenylate kinase; 97.3 0.00023 4.9E-09 48.9 3.1 23 6-28 2-24 (184)
485 PRK13851 type IV secretion sys 97.3 0.00025 5.5E-09 53.4 3.5 27 5-31 162-188 (344)
486 cd01131 PilT Pilus retraction 97.3 0.00021 4.5E-09 49.8 2.9 23 8-30 4-26 (198)
487 PRK15453 phosphoribulokinase; 97.3 0.00027 5.8E-09 51.4 3.5 27 1-27 1-27 (290)
488 TIGR01359 UMP_CMP_kin_fam UMP- 97.3 0.00023 5E-09 48.8 2.9 21 8-28 2-22 (183)
489 COG1936 Predicted nucleotide k 97.3 0.00023 5E-09 47.6 2.7 21 6-26 1-21 (180)
490 TIGR01351 adk adenylate kinase 97.3 0.00024 5.1E-09 50.0 2.9 21 7-27 1-21 (210)
491 COG3638 ABC-type phosphate/pho 97.2 0.00025 5.5E-09 49.9 2.8 20 8-27 33-52 (258)
492 cd03225 ABC_cobalt_CbiO_domain 97.2 0.00034 7.4E-09 49.1 3.5 24 7-30 29-52 (211)
493 PRK08356 hypothetical protein; 97.2 0.00035 7.5E-09 48.5 3.4 27 1-27 1-27 (195)
494 COG1161 Predicted GTPases [Gen 97.2 0.00028 6.1E-09 52.8 3.1 94 59-172 16-110 (322)
495 cd03226 ABC_cobalt_CbiO_domain 97.2 0.00038 8.2E-09 48.7 3.6 24 7-30 28-51 (205)
496 PRK05057 aroK shikimate kinase 97.2 0.00034 7.4E-09 47.5 3.3 24 5-28 4-27 (172)
497 COG1121 ZnuC ABC-type Mn/Zn tr 97.2 0.00027 5.9E-09 50.6 2.8 22 8-29 33-54 (254)
498 COG1120 FepC ABC-type cobalami 97.2 0.00027 5.8E-09 50.8 2.8 22 8-29 31-52 (258)
499 PRK05541 adenylylsulfate kinas 97.2 0.00036 7.8E-09 47.6 3.4 27 2-28 4-30 (176)
500 cd03255 ABC_MJ0796_Lo1CDE_FtsE 97.2 0.00037 8E-09 49.2 3.6 24 7-30 32-55 (218)
No 1
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=100.00 E-value=3.1e-40 Score=228.22 Aligned_cols=189 Identities=57% Similarity=1.023 Sum_probs=161.8
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEE
Q psy4710 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMC 83 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v 83 (192)
..+||+++|+.|+|||||+.++..+.+...+.++.+..+...+.+++..+.+.+|||+|++.|...+..+++++|++|+|
T Consensus 2 ~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilv 81 (191)
T cd01875 2 QSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIIC 81 (191)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEE
Confidence 56899999999999999999999999988888888877766667888899999999999999999999999999999999
Q ss_pred EECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccCC
Q psy4710 84 FSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKS 163 (192)
Q Consensus 84 ~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 163 (192)
||++++++++.+...|...+....++.|++||+||.|+.+.....+.......+.+..+++..+++.++..+++++||++
T Consensus 82 ydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SAk~ 161 (191)
T cd01875 82 FSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSALN 161 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCCCC
Confidence 99999999999976788877776678999999999999765443333444445667888999999998867999999999
Q ss_pred cCCHHHHHHHHHHHHhhhcc-ccccccccC
Q psy4710 164 KEGVREVFETATRAALQVKK-KKKGRCRLL 192 (192)
Q Consensus 164 ~~gi~~~~~~i~~~~~~~~~-~~~~~c~~~ 192 (192)
|+|++++|+++.+.+..+.. +++.+|.+|
T Consensus 162 g~~v~e~f~~l~~~~~~~~~~~~~~~c~~~ 191 (191)
T cd01875 162 QDGVKEVFAEAVRAVLNPTPIKDTKSCVLL 191 (191)
T ss_pred CCCHHHHHHHHHHHHhccccccCCCCceeC
Confidence 99999999999999988642 233359876
No 2
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=100.00 E-value=1.5e-38 Score=217.59 Aligned_cols=177 Identities=51% Similarity=0.975 Sum_probs=154.9
Q ss_pred ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy4710 3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 82 (192)
Q Consensus 3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 82 (192)
..++||+++|++|+|||||++++..+.+...+.|+....+...+.+++..+.+.+|||+|++.|...+..+++++|++|+
T Consensus 3 ~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~il 82 (182)
T cd04172 3 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLI 82 (182)
T ss_pred cceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeEEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEEE
Confidence 46899999999999999999999999999888888887777777888999999999999999999999999999999999
Q ss_pred EEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccC
Q psy4710 83 CFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAK 162 (192)
Q Consensus 83 v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 162 (192)
|||++++++++.+...|.+.+....++.|+++|+||+|+.........+.....+.++.+++.++++.+++.+|+++||+
T Consensus 83 vyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk 162 (182)
T cd04172 83 CFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSAL 162 (182)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEECCcC
Confidence 99999999999986689999988888999999999999965433222222223456889999999999996699999999
Q ss_pred CcCC-HHHHHHHHHHHHh
Q psy4710 163 SKEG-VREVFETATRAAL 179 (192)
Q Consensus 163 ~~~g-i~~~~~~i~~~~~ 179 (192)
+++| |+++|..+.+.+.
T Consensus 163 ~~~n~v~~~F~~~~~~~~ 180 (182)
T cd04172 163 QSENSVRDIFHVATLACV 180 (182)
T ss_pred CCCCCHHHHHHHHHHHHh
Confidence 9998 9999999988654
No 3
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=3.3e-38 Score=215.46 Aligned_cols=175 Identities=53% Similarity=0.971 Sum_probs=151.7
Q ss_pred ceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEEE
Q psy4710 5 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF 84 (192)
Q Consensus 5 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 84 (192)
++||+++|++|+|||||++++.++.++..+.++....+...+.+++..+.+.+|||+|++.|......+++++|++|+||
T Consensus 1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvf 80 (178)
T cd04131 1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICF 80 (178)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEEEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEE
Confidence 47999999999999999999999999888888887777667778889999999999999999999999999999999999
Q ss_pred ECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccCCc
Q psy4710 85 SIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSK 164 (192)
Q Consensus 85 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 164 (192)
|++++++++.+...|...+....++.|+++|+||+|+...............+.++.+++.++++.++..+|+++||++|
T Consensus 81 dit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~~~ 160 (178)
T cd04131 81 DISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAFTS 160 (178)
T ss_pred ECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccCcC
Confidence 99999999997668999998888899999999999996543322222222345688999999999999668999999999
Q ss_pred CC-HHHHHHHHHHHHh
Q psy4710 165 EG-VREVFETATRAAL 179 (192)
Q Consensus 165 ~g-i~~~~~~i~~~~~ 179 (192)
+| ++++|..+.+...
T Consensus 161 ~~~v~~~F~~~~~~~~ 176 (178)
T cd04131 161 EKSVRDIFHVATMACL 176 (178)
T ss_pred CcCHHHHHHHHHHHHh
Confidence 95 9999999998654
No 4
>KOG0092|consensus
Probab=100.00 E-value=1.2e-38 Score=209.62 Aligned_cols=170 Identities=34% Similarity=0.588 Sum_probs=154.2
Q ss_pred CcccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCE
Q psy4710 1 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDV 79 (192)
Q Consensus 1 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ 79 (192)
|...++||+++|..++|||||+.++..+.|.+...++++-.+ .+.+......+++.+|||+|+++|+++.+.+++++++
T Consensus 1 ~~~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~A 80 (200)
T KOG0092|consen 1 MATREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANA 80 (200)
T ss_pred CCcceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcE
Confidence 677899999999999999999999999999998888887655 6777788889999999999999999999999999999
Q ss_pred EEEEEECCChhhhhchhhhhHHHHhhhCC-CCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEE
Q psy4710 80 ILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLE 158 (192)
Q Consensus 80 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~-~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (192)
+|+|||+++.+||..++ .|...+.+..+ +.-+.+||||+|+.. .+.+..+++..+++..+ ..+++
T Consensus 81 AivvYDit~~~SF~~aK-~WvkeL~~~~~~~~vialvGNK~DL~~------------~R~V~~~ea~~yAe~~g-ll~~E 146 (200)
T KOG0092|consen 81 AIVVYDITDEESFEKAK-NWVKELQRQASPNIVIALVGNKADLLE------------RREVEFEEAQAYAESQG-LLFFE 146 (200)
T ss_pred EEEEEecccHHHHHHHH-HHHHHHHhhCCCCeEEEEecchhhhhh------------cccccHHHHHHHHHhcC-CEEEE
Confidence 99999999999999995 89998888764 566678999999987 57899999999999988 59999
Q ss_pred eccCCcCCHHHHHHHHHHHHhhhccc
Q psy4710 159 CSAKSKEGVREVFETATRAALQVKKK 184 (192)
Q Consensus 159 ~Sa~~~~gi~~~~~~i~~~~~~~~~~ 184 (192)
+||+++.|++++|..|.+.+......
T Consensus 147 TSAKTg~Nv~~if~~Ia~~lp~~~~~ 172 (200)
T KOG0092|consen 147 TSAKTGENVNEIFQAIAEKLPCSDPQ 172 (200)
T ss_pred EecccccCHHHHHHHHHHhccCcccc
Confidence 99999999999999999999887543
No 5
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=100.00 E-value=5.2e-38 Score=216.89 Aligned_cols=187 Identities=55% Similarity=0.959 Sum_probs=159.4
Q ss_pred eeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEEEE
Q psy4710 6 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFS 85 (192)
Q Consensus 6 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 85 (192)
.||+++|++|+|||||+++|.++.+...+.++....+...+..++..+.+.+||++|++.+...+...++.+|++++|||
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~d 80 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFS 80 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeEEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEE
Confidence 38999999999999999999999998888888777766666677888999999999999999999999999999999999
Q ss_pred CCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccCCcC
Q psy4710 86 IDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKE 165 (192)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 165 (192)
++++++++.+...|+..+....++.|+++|+||+|+...............+.+..+++..+++..+.++++++||++|.
T Consensus 81 v~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~ 160 (189)
T cd04134 81 VDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKLNR 160 (189)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCcCC
Confidence 99999999986679988887778899999999999977654443333444455677888888888776789999999999
Q ss_pred CHHHHHHHHHHHHhhhc--cccccccccC
Q psy4710 166 GVREVFETATRAALQVK--KKKKGRCRLL 192 (192)
Q Consensus 166 gi~~~~~~i~~~~~~~~--~~~~~~c~~~ 192 (192)
|++++|.++.+.+...+ ....+.|.+|
T Consensus 161 ~v~e~f~~l~~~~~~~~~~~~~~~~~~~~ 189 (189)
T cd04134 161 GVNEAFTEAARVALNVRPPHPHSSACTIA 189 (189)
T ss_pred CHHHHHHHHHHHHhcccccCcCCCcceeC
Confidence 99999999999998755 3456688876
No 6
>KOG0084|consensus
Probab=100.00 E-value=9.8e-39 Score=210.87 Aligned_cols=167 Identities=34% Similarity=0.648 Sum_probs=154.6
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy4710 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 82 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 82 (192)
+-+||+++|++|+|||.|+.+|..+.+.+.+..+++-.+ .+.+.++++.+++++|||+||++|+....+++++++++|+
T Consensus 8 ylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGii~ 87 (205)
T KOG0084|consen 8 YLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIF 87 (205)
T ss_pred eEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeEEE
Confidence 579999999999999999999999999999998888655 7788999999999999999999999999999999999999
Q ss_pred EEECCChhhhhchhhhhHHHHhhhC-CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEecc
Q psy4710 83 CFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSA 161 (192)
Q Consensus 83 v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 161 (192)
|||+++.+||..+. .|+..+.++. ++.|.++|+||+|+.+ .+.++.+++++|+..++..+++++||
T Consensus 88 vyDiT~~~SF~~v~-~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~------------~~~v~~~~a~~fa~~~~~~~f~ETSA 154 (205)
T KOG0084|consen 88 VYDITKQESFNNVK-RWIQEIDRYASENVPKLLVGNKCDLTE------------KRVVSTEEAQEFADELGIPIFLETSA 154 (205)
T ss_pred EEEcccHHHhhhHH-HHHHHhhhhccCCCCeEEEeeccccHh------------heecCHHHHHHHHHhcCCcceeeccc
Confidence 99999999999995 8999999887 4679999999999988 58899999999999999633999999
Q ss_pred CCcCCHHHHHHHHHHHHhhhcc
Q psy4710 162 KSKEGVREVFETATRAALQVKK 183 (192)
Q Consensus 162 ~~~~gi~~~~~~i~~~~~~~~~ 183 (192)
+++.|+++.|..+...+..+..
T Consensus 155 K~~~NVe~~F~~la~~lk~~~~ 176 (205)
T KOG0084|consen 155 KDSTNVEDAFLTLAKELKQRKG 176 (205)
T ss_pred CCccCHHHHHHHHHHHHHHhcc
Confidence 9999999999999998887754
No 7
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=100.00 E-value=1.3e-37 Score=212.28 Aligned_cols=173 Identities=55% Similarity=1.029 Sum_probs=152.2
Q ss_pred eeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEEEE
Q psy4710 6 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFS 85 (192)
Q Consensus 6 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 85 (192)
+||+++|.+|+|||||++++..+.+...+.|+....+...+...+..+.+.+||++|++.+...+..+++++|++|+|||
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d 81 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFS 81 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeEEEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEEE
Confidence 79999999999999999999999998888888877776666778888999999999999999999889999999999999
Q ss_pred CCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccCCcC
Q psy4710 86 IDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKE 165 (192)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 165 (192)
++++++++.+.+.|...+....++.|+++|+||+|+.......+.+.....+.+..+++..+++..+..+++++||++|+
T Consensus 82 ~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~tg~ 161 (175)
T cd01874 82 VVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALTQK 161 (175)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCCCCC
Confidence 99999999997679888887777899999999999977655555555445577888999999988876799999999999
Q ss_pred CHHHHHHHHHHHH
Q psy4710 166 GVREVFETATRAA 178 (192)
Q Consensus 166 gi~~~~~~i~~~~ 178 (192)
|++++|+.+...+
T Consensus 162 ~v~~~f~~~~~~~ 174 (175)
T cd01874 162 GLKNVFDEAILAA 174 (175)
T ss_pred CHHHHHHHHHHHh
Confidence 9999999998764
No 8
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=2.5e-37 Score=217.60 Aligned_cols=178 Identities=47% Similarity=0.894 Sum_probs=154.5
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEE
Q psy4710 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMC 83 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v 83 (192)
..+||+++|++|+|||||+++|..+.+...+.|+....+...+.+++..+.+.+|||+|++.|...+..+++++|++++|
T Consensus 12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIlV 91 (232)
T cd04174 12 MRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLC 91 (232)
T ss_pred eeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeEEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEEEE
Confidence 57899999999999999999999999999888888877777778889999999999999999999999999999999999
Q ss_pred EECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccCC
Q psy4710 84 FSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKS 163 (192)
Q Consensus 84 ~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 163 (192)
||++++++|+.+...|...+....++.|+++|+||+|+.........+.....+.++.+++.++++.++..+|++|||++
T Consensus 92 yDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~EtSAkt 171 (232)
T cd04174 92 FDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLECSAFT 171 (232)
T ss_pred EECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEEccCCc
Confidence 99999999998656899999887788999999999998654332222222234678889999999999965799999999
Q ss_pred cC-CHHHHHHHHHHHHhhh
Q psy4710 164 KE-GVREVFETATRAALQV 181 (192)
Q Consensus 164 ~~-gi~~~~~~i~~~~~~~ 181 (192)
|+ |++++|..+...+.+.
T Consensus 172 g~~~V~e~F~~~~~~~~~~ 190 (232)
T cd04174 172 SEKSIHSIFRSASLLCLNK 190 (232)
T ss_pred CCcCHHHHHHHHHHHHHHh
Confidence 98 8999999999888765
No 9
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=100.00 E-value=3.1e-37 Score=216.17 Aligned_cols=178 Identities=49% Similarity=0.958 Sum_probs=155.5
Q ss_pred ceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEEE
Q psy4710 5 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF 84 (192)
Q Consensus 5 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 84 (192)
++||+|+|++|+|||||+++|..+.++..+.|+....+...+.+++..+.+.+|||+|++.|...+..+++++|++|+||
T Consensus 1 ~~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvf 80 (222)
T cd04173 1 RCKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICF 80 (222)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceEEEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEE
Confidence 47999999999999999999999999988888888777777788889999999999999999999999999999999999
Q ss_pred ECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccCCc
Q psy4710 85 SIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSK 164 (192)
Q Consensus 85 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 164 (192)
|++++++++.+...|...+....++.|++||+||+|+..+......+.......++.+++..+++..++.+|++|||+++
T Consensus 81 dis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~~ 160 (222)
T cd04173 81 DISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRSS 160 (222)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCcC
Confidence 99999999999878998888888899999999999997654333333333344578899999999999779999999998
Q ss_pred CC-HHHHHHHHHHHHhhhc
Q psy4710 165 EG-VREVFETATRAALQVK 182 (192)
Q Consensus 165 ~g-i~~~~~~i~~~~~~~~ 182 (192)
++ |+++|..+..+.+.+.
T Consensus 161 ~~~V~~~F~~~~~~~~~~~ 179 (222)
T cd04173 161 ERSVRDVFHVATVASLGRG 179 (222)
T ss_pred CcCHHHHHHHHHHHHHhcc
Confidence 85 9999999999887753
No 10
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=100.00 E-value=6.5e-37 Score=208.25 Aligned_cols=173 Identities=49% Similarity=0.923 Sum_probs=149.2
Q ss_pred eeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEEEE
Q psy4710 6 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFS 85 (192)
Q Consensus 6 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 85 (192)
+||+++|.+++|||||+.++..+.+...+.++....+...+.+++..+.+.+|||+|++.|...+..++++++++|+|||
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd 81 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS 81 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeEEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEEE
Confidence 68999999999999999999999999888888877776677788889999999999999999999999999999999999
Q ss_pred CCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccCCcC
Q psy4710 86 IDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKE 165 (192)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 165 (192)
++++++|+.+.+.|+..+....++.|++||+||+|+.+... ........+.+..+++..+++..+..+|+++||+++.
T Consensus 82 ~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~--~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~ 159 (176)
T cd04133 82 LISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDDKQ--YLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQ 159 (176)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhccChh--hhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCccc
Confidence 99999999986689999887777899999999999965321 0111122345788899999999885579999999999
Q ss_pred CHHHHHHHHHHHHhh
Q psy4710 166 GVREVFETATRAALQ 180 (192)
Q Consensus 166 gi~~~~~~i~~~~~~ 180 (192)
||+++|+.+.+.+..
T Consensus 160 nV~~~F~~~~~~~~~ 174 (176)
T cd04133 160 NVKAVFDAAIKVVLQ 174 (176)
T ss_pred CHHHHHHHHHHHHhc
Confidence 999999999987643
No 11
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=100.00 E-value=6.4e-37 Score=208.70 Aligned_cols=173 Identities=60% Similarity=1.052 Sum_probs=149.8
Q ss_pred ceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEEE
Q psy4710 5 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF 84 (192)
Q Consensus 5 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 84 (192)
.+||+++|++|+|||||+.++..+.+...+.++....+...+.+++..+.+.+|||||++.+...+..+++++|++|+||
T Consensus 1 ~~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (174)
T cd01871 1 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF 80 (174)
T ss_pred CeEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence 47999999999999999999999999888888876666666677888899999999999999999999999999999999
Q ss_pred ECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccCCc
Q psy4710 85 SIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSK 164 (192)
Q Consensus 85 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 164 (192)
|++++++++.+...|...+....++.|+++|+||+|+.......+.......+.+..+++..+++.++..+++++||++|
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~ 160 (174)
T cd01871 81 SLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 160 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeccccc
Confidence 99999999999777988887777789999999999996544333334444456788999999999998679999999999
Q ss_pred CCHHHHHHHHHHH
Q psy4710 165 EGVREVFETATRA 177 (192)
Q Consensus 165 ~gi~~~~~~i~~~ 177 (192)
+|++++|+.+.+.
T Consensus 161 ~~i~~~f~~l~~~ 173 (174)
T cd01871 161 KGLKTVFDEAIRA 173 (174)
T ss_pred CCHHHHHHHHHHh
Confidence 9999999998764
No 12
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=100.00 E-value=6.2e-37 Score=211.44 Aligned_cols=179 Identities=63% Similarity=1.124 Sum_probs=152.7
Q ss_pred eeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEEC-CeEEEEEEEeCCCCCcccccccccCCCCCEEEEEE
Q psy4710 6 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVD-SKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF 84 (192)
Q Consensus 6 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 84 (192)
+||+++|++|+|||||+++|.++.+...+.++....+...+... +..+.+.+|||||++.+...+...++.+|++++||
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~ 80 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLICY 80 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEEE
Confidence 58999999999999999999999998887777776665555555 67789999999999999988888999999999999
Q ss_pred ECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccCCc
Q psy4710 85 SIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSK 164 (192)
Q Consensus 85 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 164 (192)
|++++++++.+...|+..+....++.|+++|+||.|+....+ ..+.+...+..+++..++..+++++||++|
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--------~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~ 152 (187)
T cd04132 81 AVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDKN--------LDRKVTPAQAESVAKKQGAFAYLECSAKTM 152 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhhCcc--------ccCCcCHHHHHHHHHHcCCcEEEEccCCCC
Confidence 999999999997678888877667899999999999865321 124566778888888888558999999999
Q ss_pred CCHHHHHHHHHHHHhhhc-------cccccccccC
Q psy4710 165 EGVREVFETATRAALQVK-------KKKKGRCRLL 192 (192)
Q Consensus 165 ~gi~~~~~~i~~~~~~~~-------~~~~~~c~~~ 192 (192)
.|++++|..+.+.+...+ .+++.+|.+|
T Consensus 153 ~~v~~~f~~l~~~~~~~~~~~~~~~~~~~~~c~~~ 187 (187)
T cd04132 153 ENVEEVFDTAIEEALKKEGKAIFKKKKKKRKCVVL 187 (187)
T ss_pred CCHHHHHHHHHHHHHhhhhhhhhccCCCCcccccC
Confidence 999999999999999874 3456789886
No 13
>KOG0394|consensus
Probab=100.00 E-value=2.5e-37 Score=201.72 Aligned_cols=168 Identities=30% Similarity=0.574 Sum_probs=152.6
Q ss_pred ceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEE
Q psy4710 5 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMC 83 (192)
Q Consensus 5 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v 83 (192)
-+||+++|++|+|||||++++.+.+|...+..+++..+ .+.+.++++.+.+++|||+|+++|.++...+++.+|.++++
T Consensus 9 lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcCvlv 88 (210)
T KOG0394|consen 9 LLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCCVLV 88 (210)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceEEEE
Confidence 39999999999999999999999999999888887655 78889999999999999999999999999999999999999
Q ss_pred EECCChhhhhchhhhhHHHHhhhC-----CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEE
Q psy4710 84 FSIDSPDSLENIPEKWTPEVKHFC-----PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLE 158 (192)
Q Consensus 84 ~d~~~~~~~~~~~~~~~~~~~~~~-----~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (192)
||+.++.+|+.+ +.|...+.... ...|.||+|||+|+.... .+.++...++.+|...+.+|||+
T Consensus 89 ydv~~~~Sfe~L-~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~----------~r~VS~~~Aq~WC~s~gnipyfE 157 (210)
T KOG0394|consen 89 YDVNNPKSFENL-ENWRKEFLIQASPQDPETFPFVILGNKIDVDGGK----------SRQVSEKKAQTWCKSKGNIPYFE 157 (210)
T ss_pred eecCChhhhccH-HHHHHHHHHhcCCCCCCcccEEEEcccccCCCCc----------cceeeHHHHHHHHHhcCCceeEE
Confidence 999999999999 58888776544 257999999999997632 37899999999999999999999
Q ss_pred eccCCcCCHHHHHHHHHHHHhhhcc
Q psy4710 159 CSAKSKEGVREVFETATRAALQVKK 183 (192)
Q Consensus 159 ~Sa~~~~gi~~~~~~i~~~~~~~~~ 183 (192)
+||++..|+++.|..+.+.++....
T Consensus 158 tSAK~~~NV~~AFe~ia~~aL~~E~ 182 (210)
T KOG0394|consen 158 TSAKEATNVDEAFEEIARRALANED 182 (210)
T ss_pred ecccccccHHHHHHHHHHHHHhccc
Confidence 9999999999999999999887653
No 14
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=100.00 E-value=1.5e-36 Score=208.64 Aligned_cols=165 Identities=27% Similarity=0.447 Sum_probs=145.5
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy4710 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 82 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 82 (192)
..+||+++|..|+|||||+.++..+.+...+.++.+..+ ...+.+++..+.+.+||++|++.|...+..+++.+|++|+
T Consensus 5 ~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~ill 84 (189)
T cd04121 5 YLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGIIL 84 (189)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEE
Confidence 468999999999999999999999888776655554433 4556778888999999999999999999999999999999
Q ss_pred EEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccC
Q psy4710 83 CFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAK 162 (192)
Q Consensus 83 v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 162 (192)
|||++++++++.+ ..|++.+....++.|++||+||.|+.. .+.++.++++.+++..+ ++++++||+
T Consensus 85 VfD~t~~~Sf~~~-~~w~~~i~~~~~~~piilVGNK~DL~~------------~~~v~~~~~~~~a~~~~-~~~~e~SAk 150 (189)
T cd04121 85 VYDITNRWSFDGI-DRWIKEIDEHAPGVPKILVGNRLHLAF------------KRQVATEQAQAYAERNG-MTFFEVSPL 150 (189)
T ss_pred EEECcCHHHHHHH-HHHHHHHHHhCCCCCEEEEEECccchh------------ccCCCHHHHHHHHHHcC-CEEEEecCC
Confidence 9999999999999 489999988778999999999999965 35677888999998887 599999999
Q ss_pred CcCCHHHHHHHHHHHHhhhc
Q psy4710 163 SKEGVREVFETATRAALQVK 182 (192)
Q Consensus 163 ~~~gi~~~~~~i~~~~~~~~ 182 (192)
+|.|++++|+++.+.+...+
T Consensus 151 ~g~~V~~~F~~l~~~i~~~~ 170 (189)
T cd04121 151 CNFNITESFTELARIVLMRH 170 (189)
T ss_pred CCCCHHHHHHHHHHHHHHhc
Confidence 99999999999999887654
No 15
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=100.00 E-value=4.8e-36 Score=204.76 Aligned_cols=173 Identities=72% Similarity=1.203 Sum_probs=151.4
Q ss_pred EEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEEEECC
Q psy4710 8 LVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSID 87 (192)
Q Consensus 8 i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 87 (192)
|+|+|++|+|||||++++.++.+...+.++....+...+..++..+.+.+|||||++.+...+...++.+|++|+|||++
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~ 80 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVD 80 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEECC
Confidence 68999999999999999999999888888877777667777888899999999999999999999999999999999999
Q ss_pred ChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccCCcCCH
Q psy4710 88 SPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGV 167 (192)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 167 (192)
++++++.+...|+..+....++.|+++|+||+|+.................++.+++..+++..+..+++++||+++.|+
T Consensus 81 ~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v 160 (174)
T smart00174 81 SPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQEGV 160 (174)
T ss_pred CHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCCCH
Confidence 99999999777999988877899999999999997654444444444456678888999999988669999999999999
Q ss_pred HHHHHHHHHHHhh
Q psy4710 168 REVFETATRAALQ 180 (192)
Q Consensus 168 ~~~~~~i~~~~~~ 180 (192)
+++|+.+.+.+..
T Consensus 161 ~~lf~~l~~~~~~ 173 (174)
T smart00174 161 REVFEEAIRAALN 173 (174)
T ss_pred HHHHHHHHHHhcC
Confidence 9999999988754
No 16
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=100.00 E-value=1.2e-35 Score=202.81 Aligned_cols=174 Identities=55% Similarity=1.006 Sum_probs=153.2
Q ss_pred eeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEEEE
Q psy4710 6 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFS 85 (192)
Q Consensus 6 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 85 (192)
+||+++|++|+|||||++++.++.+...+.++....+...+.+++..+.+.+||+||++.+...+...++.+|++++|+|
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~ 80 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFS 80 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEEE
Confidence 58999999999999999999999988877777766666667778888899999999999999999999999999999999
Q ss_pred CCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccCCcC
Q psy4710 86 IDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKE 165 (192)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 165 (192)
++++++++.+.+.|...+....++.|+++++||+|+.+.............+.++.+++..+++.++..+++++||++|.
T Consensus 81 ~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~ 160 (174)
T cd04135 81 VVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALTQK 160 (174)
T ss_pred CCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCcCC
Confidence 99999999997789888877677899999999999977666555566666678888899999998887789999999999
Q ss_pred CHHHHHHHHHHHHh
Q psy4710 166 GVREVFETATRAAL 179 (192)
Q Consensus 166 gi~~~~~~i~~~~~ 179 (192)
|++++|+.+..+++
T Consensus 161 gi~~~f~~~~~~~~ 174 (174)
T cd04135 161 GLKTVFDEAILAIL 174 (174)
T ss_pred CHHHHHHHHHHHhC
Confidence 99999999988763
No 17
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=100.00 E-value=7.2e-36 Score=206.99 Aligned_cols=163 Identities=28% Similarity=0.572 Sum_probs=142.3
Q ss_pred eeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEEE
Q psy4710 6 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF 84 (192)
Q Consensus 6 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 84 (192)
+.|+++|..|+|||||++++..+.+...+.++.+..+ ...+.+++..+.+.+|||+|++.|...+..+++++|++|+||
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf 80 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY 80 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence 4799999999999999999999999888777766444 556778888899999999999999999999999999999999
Q ss_pred ECCChhhhhchhhhhHHHHhhhC-CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccCC
Q psy4710 85 SIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKS 163 (192)
Q Consensus 85 d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 163 (192)
|++++++++.+. .|+..+.... ++.|+++|+||+|+.. .+.+...++.++++....++++++||++
T Consensus 81 Dvtd~~Sf~~l~-~w~~~i~~~~~~~~piilVgNK~DL~~------------~~~v~~~~~~~~a~~~~~~~~~etSAkt 147 (202)
T cd04120 81 DITKKETFDDLP-KWMKMIDKYASEDAELLLVGNKLDCET------------DREISRQQGEKFAQQITGMRFCEASAKD 147 (202)
T ss_pred ECcCHHHHHHHH-HHHHHHHHhCCCCCcEEEEEECccccc------------ccccCHHHHHHHHHhcCCCEEEEecCCC
Confidence 999999999995 7888887654 5799999999999865 3567778888888876446899999999
Q ss_pred cCCHHHHHHHHHHHHhhh
Q psy4710 164 KEGVREVFETATRAALQV 181 (192)
Q Consensus 164 ~~gi~~~~~~i~~~~~~~ 181 (192)
|.||+++|+++.+.+...
T Consensus 148 g~gV~e~F~~l~~~~~~~ 165 (202)
T cd04120 148 NFNVDEIFLKLVDDILKK 165 (202)
T ss_pred CCCHHHHHHHHHHHHHHh
Confidence 999999999999888654
No 18
>KOG0078|consensus
Probab=100.00 E-value=3.1e-36 Score=201.76 Aligned_cols=166 Identities=36% Similarity=0.630 Sum_probs=154.8
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy4710 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 82 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 82 (192)
+-+||+++|++++|||+++.++..+.+...+..+.+-.+ .+.+..++..+.+++|||+||++|+.....+++.|+++++
T Consensus 11 ~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~gi~L 90 (207)
T KOG0078|consen 11 YLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGILL 90 (207)
T ss_pred eEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCeeEE
Confidence 568999999999999999999999999999888887655 7788899999999999999999999999999999999999
Q ss_pred EEECCChhhhhchhhhhHHHHhhhCC-CCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEecc
Q psy4710 83 CFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSA 161 (192)
Q Consensus 83 v~d~~~~~~~~~~~~~~~~~~~~~~~-~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 161 (192)
|||+++..+|+++. .|+..+..+.+ ++|.++||||+|+.. .+.++.+.++.++..++ ++|+++||
T Consensus 91 vyDitne~Sfeni~-~W~~~I~e~a~~~v~~~LvGNK~D~~~------------~R~V~~e~ge~lA~e~G-~~F~EtSA 156 (207)
T KOG0078|consen 91 VYDITNEKSFENIR-NWIKNIDEHASDDVVKILVGNKCDLEE------------KRQVSKERGEALAREYG-IKFFETSA 156 (207)
T ss_pred EEEccchHHHHHHH-HHHHHHHhhCCCCCcEEEeeccccccc------------cccccHHHHHHHHHHhC-CeEEEccc
Confidence 99999999999996 59999999885 899999999999987 68899999999999998 59999999
Q ss_pred CCcCCHHHHHHHHHHHHhhhcc
Q psy4710 162 KSKEGVREVFETATRAALQVKK 183 (192)
Q Consensus 162 ~~~~gi~~~~~~i~~~~~~~~~ 183 (192)
++|.||++.|-.+.+.+..+..
T Consensus 157 k~~~NI~eaF~~La~~i~~k~~ 178 (207)
T KOG0078|consen 157 KTNFNIEEAFLSLARDILQKLE 178 (207)
T ss_pred cCCCCHHHHHHHHHHHHHhhcc
Confidence 9999999999999999986543
No 19
>PTZ00369 Ras-like protein; Provisional
Probab=100.00 E-value=1.2e-35 Score=205.24 Aligned_cols=167 Identities=35% Similarity=0.542 Sum_probs=144.2
Q ss_pred CcccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEE
Q psy4710 1 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVI 80 (192)
Q Consensus 1 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~ 80 (192)
|++.++||+++|++|+|||||++++.++.+...+.++....+...+.+++..+.+.+|||||++++...+..+++.+|++
T Consensus 1 ~~~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~i 80 (189)
T PTZ00369 1 MASTEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGF 80 (189)
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEEEEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEE
Confidence 67789999999999999999999999999888777777777767777888899999999999999999999999999999
Q ss_pred EEEEECCChhhhhchhhhhHHHHhhhC--CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEE
Q psy4710 81 LMCFSIDSPDSLENIPEKWTPEVKHFC--PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLE 158 (192)
Q Consensus 81 i~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (192)
++|||++++++++.+. .|...+.... ++.|+++|+||+|+.. .+.+...++..+++.++ .++++
T Consensus 81 ilv~D~s~~~s~~~~~-~~~~~i~~~~~~~~~piiiv~nK~Dl~~------------~~~i~~~~~~~~~~~~~-~~~~e 146 (189)
T PTZ00369 81 LCVYSITSRSSFEEIA-SFREQILRVKDKDRVPMILVGNKCDLDS------------ERQVSTGEGQELAKSFG-IPFLE 146 (189)
T ss_pred EEEEECCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECccccc------------ccccCHHHHHHHHHHhC-CEEEE
Confidence 9999999999999985 6776665543 4789999999999865 24455666777777776 59999
Q ss_pred eccCCcCCHHHHHHHHHHHHhhh
Q psy4710 159 CSAKSKEGVREVFETATRAALQV 181 (192)
Q Consensus 159 ~Sa~~~~gi~~~~~~i~~~~~~~ 181 (192)
+||++|.|++++|.++.+.+...
T Consensus 147 ~Sak~~~gi~~~~~~l~~~l~~~ 169 (189)
T PTZ00369 147 TSAKQRVNVDEAFYELVREIRKY 169 (189)
T ss_pred eeCCCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999888765
No 20
>KOG0098|consensus
Probab=100.00 E-value=4e-36 Score=196.46 Aligned_cols=166 Identities=31% Similarity=0.574 Sum_probs=153.3
Q ss_pred ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEE
Q psy4710 3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 81 (192)
Q Consensus 3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i 81 (192)
...+|++++|+.|+|||+|+.++....|......+.+-.+ .+.+.+++..+++++|||+|++.|++.+..+++.+.++|
T Consensus 4 ~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~Gal 83 (216)
T KOG0098|consen 4 AYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGAL 83 (216)
T ss_pred cceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcceE
Confidence 4689999999999999999999999999988888877655 678899999999999999999999999999999999999
Q ss_pred EEEECCChhhhhchhhhhHHHHhhhC-CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEec
Q psy4710 82 MCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECS 160 (192)
Q Consensus 82 ~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 160 (192)
+|||++..++|.++. .|+..++.+. ++.-+++++||+|+.. .+.++.++++.|+++.+ +.++++|
T Consensus 84 LVydit~r~sF~hL~-~wL~D~rq~~~~NmvImLiGNKsDL~~------------rR~Vs~EEGeaFA~ehg-LifmETS 149 (216)
T KOG0098|consen 84 LVYDITRRESFNHLT-SWLEDARQHSNENMVIMLIGNKSDLEA------------RREVSKEEGEAFAREHG-LIFMETS 149 (216)
T ss_pred EEEEccchhhHHHHH-HHHHHHHHhcCCCcEEEEEcchhhhhc------------cccccHHHHHHHHHHcC-ceeehhh
Confidence 999999999999995 8998888874 8999999999999987 68899999999999977 6899999
Q ss_pred cCCcCCHHHHHHHHHHHHhhhc
Q psy4710 161 AKSKEGVREVFETATRAALQVK 182 (192)
Q Consensus 161 a~~~~gi~~~~~~i~~~~~~~~ 182 (192)
|++++|++|.|..+.+.++..-
T Consensus 150 akt~~~VEEaF~nta~~Iy~~~ 171 (216)
T KOG0098|consen 150 AKTAENVEEAFINTAKEIYRKI 171 (216)
T ss_pred hhhhhhHHHHHHHHHHHHHHHH
Confidence 9999999999999999988764
No 21
>KOG0094|consensus
Probab=100.00 E-value=6e-36 Score=197.13 Aligned_cols=165 Identities=36% Similarity=0.597 Sum_probs=150.5
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy4710 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 82 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 82 (192)
+.+|++++|+.++|||||+++++.+.+...|.++++..+ ...+.+.+..+.+++|||+||++|+++.+.+++++.++|+
T Consensus 21 k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vavi 100 (221)
T KOG0094|consen 21 KKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI 100 (221)
T ss_pred eEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEEE
Confidence 458999999999999999999999999999999998666 7788899999999999999999999999999999999999
Q ss_pred EEECCChhhhhchhhhhHHHHhhhC-C-CCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEec
Q psy4710 83 CFSIDSPDSLENIPEKWTPEVKHFC-P-NVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECS 160 (192)
Q Consensus 83 v~d~~~~~~~~~~~~~~~~~~~~~~-~-~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 160 (192)
|||+++..+|++.. .|+....+.. . +.-+++|+||.||.+ .++++.+++...++.++. .|+++|
T Consensus 101 VyDit~~~Sfe~t~-kWi~dv~~e~gs~~viI~LVGnKtDL~d------------krqvs~eEg~~kAkel~a-~f~ets 166 (221)
T KOG0094|consen 101 VYDITDRNSFENTS-KWIEDVRRERGSDDVIIFLVGNKTDLSD------------KRQVSIEEGERKAKELNA-EFIETS 166 (221)
T ss_pred EEeccccchHHHHH-HHHHHHHhccCCCceEEEEEcccccccc------------hhhhhHHHHHHHHHHhCc-EEEEec
Confidence 99999999999995 8888877654 3 466789999999988 588899999999999995 999999
Q ss_pred cCCcCCHHHHHHHHHHHHhhhc
Q psy4710 161 AKSKEGVREVFETATRAALQVK 182 (192)
Q Consensus 161 a~~~~gi~~~~~~i~~~~~~~~ 182 (192)
|+.|.||.++|..|...+.+..
T Consensus 167 ak~g~NVk~lFrrIaa~l~~~~ 188 (221)
T KOG0094|consen 167 AKAGENVKQLFRRIAAALPGME 188 (221)
T ss_pred ccCCCCHHHHHHHHHHhccCcc
Confidence 9999999999999998888763
No 22
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=100.00 E-value=1.2e-35 Score=205.25 Aligned_cols=172 Identities=35% Similarity=0.610 Sum_probs=144.0
Q ss_pred eEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEEEEC
Q psy4710 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSI 86 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 86 (192)
||+++|.+|+|||||+++|..+.+...+.++.+..+.....+++..+.+.+|||||++.|...+..+++.+|++|+|||+
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~ 80 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYSI 80 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEEC
Confidence 68999999999999999999998888777777666656666788888999999999999999999999999999999999
Q ss_pred CChhhhhchhhhhHHHHhhh----CCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccC
Q psy4710 87 DSPDSLENIPEKWTPEVKHF----CPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAK 162 (192)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~----~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 162 (192)
++..+++.+. .|+..+... .++.|+++|+||+|+.. .+.+...++..++..++ ++++++||+
T Consensus 81 ~~~~s~~~~~-~~~~~i~~~~~~~~~~~piilvgNK~Dl~~------------~~~v~~~~~~~~~~~~~-~~~~e~SAk 146 (190)
T cd04144 81 TSRSTFERVE-RFREQIQRVKDESAADVPIMIVGNKCDKVY------------EREVSTEEGAALARRLG-CEFIEASAK 146 (190)
T ss_pred CCHHHHHHHH-HHHHHHHHHhcccCCCCCEEEEEEChhccc------------cCccCHHHHHHHHHHhC-CEEEEecCC
Confidence 9999999885 676666543 24789999999999865 24556667778888777 589999999
Q ss_pred CcCCHHHHHHHHHHHHhhhc--------------cccccccccC
Q psy4710 163 SKEGVREVFETATRAALQVK--------------KKKKGRCRLL 192 (192)
Q Consensus 163 ~~~gi~~~~~~i~~~~~~~~--------------~~~~~~c~~~ 192 (192)
+|.|++++|+++.+.+...+ .+++.+|.+|
T Consensus 147 ~~~~v~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (190)
T cd04144 147 TNVNVERAFYTLVRALRQQRQGGQGPKGGPTKKKEKKKRKCVIM 190 (190)
T ss_pred CCCCHHHHHHHHHHHHHHhhcccCCCcCCCCCcccccccCceeC
Confidence 99999999999999887653 2445678775
No 23
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=100.00 E-value=8.6e-35 Score=198.35 Aligned_cols=171 Identities=49% Similarity=0.904 Sum_probs=147.0
Q ss_pred eeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEEEE
Q psy4710 6 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFS 85 (192)
Q Consensus 6 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 85 (192)
+||+++|++|+|||||+.++.++.+...+.++..+.+...+.+++..+.+.+||+||++.+...+..+++++|++|+|||
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d 80 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFS 80 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEEE
Confidence 58999999999999999999999888887777766666667778888999999999999999999999999999999999
Q ss_pred CCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccCCcC
Q psy4710 86 IDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKE 165 (192)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 165 (192)
++++++++.+.+.|+..+....++.|+++++||.|+...............+.+..+++..+++..+..+++++||++|.
T Consensus 81 ~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~ 160 (173)
T cd04130 81 VVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALTQK 160 (173)
T ss_pred CCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence 99999999987788888877667899999999999976543333344444577788889999998886699999999999
Q ss_pred CHHHHHHHHHH
Q psy4710 166 GVREVFETATR 176 (192)
Q Consensus 166 gi~~~~~~i~~ 176 (192)
|++++|+.+.-
T Consensus 161 ~v~~lf~~~~~ 171 (173)
T cd04130 161 NLKEVFDTAIL 171 (173)
T ss_pred CHHHHHHHHHh
Confidence 99999998764
No 24
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=100.00 E-value=4e-35 Score=199.57 Aligned_cols=163 Identities=27% Similarity=0.528 Sum_probs=142.6
Q ss_pred ceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEEE
Q psy4710 5 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF 84 (192)
Q Consensus 5 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 84 (192)
.+||+++|.+|+|||||++++..+.++..+.++....+...+..++..+.+.+||+||++.+...+..+++.+|++++||
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~ 81 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIICY 81 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceEEEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEEE
Confidence 57999999999999999999999999887777777666666778888899999999999999999999999999999999
Q ss_pred ECCChhhhhchhhhhHHHHhhh--CCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccC
Q psy4710 85 SIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAK 162 (192)
Q Consensus 85 d~~~~~~~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 162 (192)
|++++.+++.+. .|...+... .++.|+++|+||+|+.. .+.++.+++..+++.++ ++++++||+
T Consensus 82 d~~~~~Sf~~~~-~~~~~i~~~~~~~~~piilvgNK~Dl~~------------~~~v~~~~~~~~a~~~~-~~~~e~Sa~ 147 (172)
T cd04141 82 SVTDRHSFQEAS-EFKKLITRVRLTEDIPLVLVGNKVDLES------------QRQVTTEEGRNLAREFN-CPFFETSAA 147 (172)
T ss_pred ECCchhHHHHHH-HHHHHHHHhcCCCCCCEEEEEEChhhhh------------cCccCHHHHHHHHHHhC-CEEEEEecC
Confidence 999999999996 576666553 25799999999999865 35577788888988887 599999999
Q ss_pred CcCCHHHHHHHHHHHHhhh
Q psy4710 163 SKEGVREVFETATRAALQV 181 (192)
Q Consensus 163 ~~~gi~~~~~~i~~~~~~~ 181 (192)
+|.||+++|+++.+.+...
T Consensus 148 ~~~~v~~~f~~l~~~~~~~ 166 (172)
T cd04141 148 LRHYIDDAFHGLVREIRRK 166 (172)
T ss_pred CCCCHHHHHHHHHHHHHHh
Confidence 9999999999999887764
No 25
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=100.00 E-value=1.5e-34 Score=197.51 Aligned_cols=174 Identities=93% Similarity=1.437 Sum_probs=148.3
Q ss_pred ceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEEE
Q psy4710 5 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF 84 (192)
Q Consensus 5 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 84 (192)
+.||+++|++|||||||++++.++.+...+.++....+...+.+++..+.+.+|||||++.+...+...++++|++++||
T Consensus 1 ~~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (175)
T cd01870 1 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF 80 (175)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceEEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEE
Confidence 36899999999999999999999999887777777666566677888899999999999999988888899999999999
Q ss_pred ECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccCCc
Q psy4710 85 SIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSK 164 (192)
Q Consensus 85 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 164 (192)
|++++++++.+.+.|...+....++.|+++|+||.|+.................+...++.+++...+..+++++||++|
T Consensus 81 ~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~ 160 (175)
T cd01870 81 SIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKTK 160 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEeccccC
Confidence 99999999998778888888776789999999999987654444444444445566788888888887678999999999
Q ss_pred CCHHHHHHHHHHHH
Q psy4710 165 EGVREVFETATRAA 178 (192)
Q Consensus 165 ~gi~~~~~~i~~~~ 178 (192)
.|++++|+++.+.+
T Consensus 161 ~~v~~lf~~l~~~~ 174 (175)
T cd01870 161 EGVREVFEMATRAA 174 (175)
T ss_pred cCHHHHHHHHHHHh
Confidence 99999999998765
No 26
>KOG0393|consensus
Probab=100.00 E-value=1.8e-35 Score=198.97 Aligned_cols=181 Identities=62% Similarity=1.086 Sum_probs=169.1
Q ss_pred ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEEC-CeEEEEEEEeCCCCCcccccccccCCCCCEEE
Q psy4710 3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVD-SKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 81 (192)
Q Consensus 3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i 81 (192)
...+|++|+|+..+|||+|+..+..+.|+..+.|+..+++...+.++ +..+.+.+|||+|+++|..+++..++++|.+|
T Consensus 2 ~~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl 81 (198)
T KOG0393|consen 2 SRRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFL 81 (198)
T ss_pred ceeeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEE
Confidence 35789999999999999999999999999999999999999988995 99999999999999999999999999999999
Q ss_pred EEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEecc
Q psy4710 82 MCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSA 161 (192)
Q Consensus 82 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 161 (192)
+||++.+++++.++.+.|++.+++++++.|+|+||+|.|+..+....+.+.......++.+++..++++.+...|+++||
T Consensus 82 ~cfsv~~p~S~~nv~~kW~pEi~~~cp~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~EcSa 161 (198)
T KOG0393|consen 82 LCFSVVSPESFENVKSKWIPEIKHHCPNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLECSA 161 (198)
T ss_pred EEEEcCChhhHHHHHhhhhHHHHhhCCCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeeehh
Confidence 99999999999999999999999999999999999999999766566666666778899999999999999999999999
Q ss_pred CCcCCHHHHHHHHHHHHhhhcc
Q psy4710 162 KSKEGVREVFETATRAALQVKK 183 (192)
Q Consensus 162 ~~~~gi~~~~~~i~~~~~~~~~ 183 (192)
++..|++++|+...+++....+
T Consensus 162 ~tq~~v~~vF~~a~~~~l~~~~ 183 (198)
T KOG0393|consen 162 LTQKGVKEVFDEAIRAALRPPQ 183 (198)
T ss_pred hhhCCcHHHHHHHHHHHhcccc
Confidence 9999999999999999988753
No 27
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=2e-34 Score=200.86 Aligned_cols=164 Identities=24% Similarity=0.445 Sum_probs=140.8
Q ss_pred eeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEEC-CeEEEEEEEeCCCCCcccccccccCCCCCEEEEE
Q psy4710 6 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVD-SKQVELALWDTAGQEDYDRLRPLSYPDTDVILMC 83 (192)
Q Consensus 6 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v 83 (192)
+||+++|++|+|||||+++|.++.+...+.++.+..+ ...+.++ +..+.+.+|||||++.+...+..++++++++|+|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv 80 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV 80 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence 5899999999999999999999988887777776544 4455666 7789999999999999999999999999999999
Q ss_pred EECCChhhhhchhhhhHHHHhhh-----CCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEE
Q psy4710 84 FSIDSPDSLENIPEKWTPEVKHF-----CPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLE 158 (192)
Q Consensus 84 ~d~~~~~~~~~~~~~~~~~~~~~-----~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (192)
||++++++++.+. .|...+... ..+.|++||+||+|+.. .+.+..+++.++++..+..++++
T Consensus 81 ~D~t~~~s~~~~~-~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~------------~~~~~~~~~~~~~~~~~~~~~~e 147 (201)
T cd04107 81 FDVTRPSTFEAVL-KWKADLDSKVTLPNGEPIPCLLLANKCDLKK------------RLAKDGEQMDQFCKENGFIGWFE 147 (201)
T ss_pred EECCCHHHHHHHH-HHHHHHHHhhcccCCCCCcEEEEEECCCccc------------ccccCHHHHHHHHHHcCCceEEE
Confidence 9999999999984 777766542 24789999999999964 24567788889998888668999
Q ss_pred eccCCcCCHHHHHHHHHHHHhhhc
Q psy4710 159 CSAKSKEGVREVFETATRAALQVK 182 (192)
Q Consensus 159 ~Sa~~~~gi~~~~~~i~~~~~~~~ 182 (192)
+||++|.|++++|+++.+.+....
T Consensus 148 ~Sak~~~~v~e~f~~l~~~l~~~~ 171 (201)
T cd04107 148 TSAKEGINIEEAMRFLVKNILAND 171 (201)
T ss_pred EeCCCCCCHHHHHHHHHHHHHHhc
Confidence 999999999999999999988764
No 28
>KOG0080|consensus
Probab=100.00 E-value=8e-35 Score=185.94 Aligned_cols=165 Identities=31% Similarity=0.598 Sum_probs=149.2
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy4710 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 82 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 82 (192)
..+||+++|.+|+|||||+-+|..+.+.+....+++-.+ .+.+.+++..+++.+|||+|+++|+.+++.+++.+.++|+
T Consensus 10 ~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiIl 89 (209)
T KOG0080|consen 10 TTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGIIL 89 (209)
T ss_pred eeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCceeEE
Confidence 459999999999999999999999999888666566444 7788999999999999999999999999999999999999
Q ss_pred EEECCChhhhhchhhhhHHHHhhhCC--CCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEec
Q psy4710 83 CFSIDSPDSLENIPEKWTPEVKHFCP--NVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECS 160 (192)
Q Consensus 83 v~d~~~~~~~~~~~~~~~~~~~~~~~--~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 160 (192)
|||++.+++|.++ +.|+..+..++. ++-.++|+||+|... .+.++.+++..|++.+++ -|+++|
T Consensus 90 VYDVT~Rdtf~kL-d~W~~Eld~Ystn~diikmlVgNKiDkes------------~R~V~reEG~kfAr~h~~-LFiE~S 155 (209)
T KOG0080|consen 90 VYDVTSRDTFVKL-DIWLKELDLYSTNPDIIKMLVGNKIDKES------------ERVVDREEGLKFARKHRC-LFIECS 155 (209)
T ss_pred EEEccchhhHHhH-HHHHHHHHhhcCCccHhHhhhcccccchh------------cccccHHHHHHHHHhhCc-EEEEcc
Confidence 9999999999999 699999998874 566689999999765 478999999999999995 899999
Q ss_pred cCCcCCHHHHHHHHHHHHhhhc
Q psy4710 161 AKSKEGVREVFETATRAALQVK 182 (192)
Q Consensus 161 a~~~~gi~~~~~~i~~~~~~~~ 182 (192)
|++.+|++.+|+.+..++++-.
T Consensus 156 Akt~~~V~~~FeelveKIi~tp 177 (209)
T KOG0080|consen 156 AKTRENVQCCFEELVEKIIETP 177 (209)
T ss_pred hhhhccHHHHHHHHHHHHhcCc
Confidence 9999999999999999998753
No 29
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=100.00 E-value=3e-34 Score=193.84 Aligned_cols=160 Identities=36% Similarity=0.588 Sum_probs=136.0
Q ss_pred ceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEEE
Q psy4710 5 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF 84 (192)
Q Consensus 5 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 84 (192)
++||+++|++|+|||||++++..+.+...+.++....+...+.+++..+.+.+|||||++.|...+..+++++|++++||
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (163)
T cd04136 1 EYKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVY 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCchhhhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEE
Confidence 47999999999999999999999988877777776666666778888899999999999999999999999999999999
Q ss_pred ECCChhhhhchhhhhHHHHhhh--CCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccC
Q psy4710 85 SIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAK 162 (192)
Q Consensus 85 d~~~~~~~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 162 (192)
|++++++++.+. .|...+... .++.|+++|+||+|+... +.+..++...+++.++ .+++++||+
T Consensus 81 d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~ 146 (163)
T cd04136 81 SITSQSSFNDLQ-DLREQILRVKDTENVPMVLVGNKCDLEDE------------RVVSREEGQALARQWG-CPFYETSAK 146 (163)
T ss_pred ECCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECcccccc------------ceecHHHHHHHHHHcC-CeEEEecCC
Confidence 999999998885 566666543 357999999999998652 3445566677777777 699999999
Q ss_pred CcCCHHHHHHHHHHHH
Q psy4710 163 SKEGVREVFETATRAA 178 (192)
Q Consensus 163 ~~~gi~~~~~~i~~~~ 178 (192)
++.|++++|+++.+.+
T Consensus 147 ~~~~v~~l~~~l~~~~ 162 (163)
T cd04136 147 SKINVDEVFADLVRQI 162 (163)
T ss_pred CCCCHHHHHHHHHHhc
Confidence 9999999999998764
No 30
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=100.00 E-value=2.9e-34 Score=194.17 Aligned_cols=161 Identities=34% Similarity=0.571 Sum_probs=137.0
Q ss_pred ceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEEE
Q psy4710 5 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF 84 (192)
Q Consensus 5 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 84 (192)
++||+++|.+|+|||||++++..+.+...+.++....+...+..++..+.+.+|||||++.+...+..+++++|++++||
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVY 80 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEE
Confidence 57999999999999999999999888877777777666667778888899999999999999999999999999999999
Q ss_pred ECCChhhhhchhhhhHHHHhhh--CCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccC
Q psy4710 85 SIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAK 162 (192)
Q Consensus 85 d~~~~~~~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 162 (192)
|+++..+++.+. .|...+... .++.|+++|+||+|+... +.....+...+++.++ .+++++||+
T Consensus 81 d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~ 146 (164)
T cd04175 81 SITAQSTFNDLQ-DLREQILRVKDTEDVPMILVGNKCDLEDE------------RVVGKEQGQNLARQWG-CAFLETSAK 146 (164)
T ss_pred ECCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECCcchhc------------cEEcHHHHHHHHHHhC-CEEEEeeCC
Confidence 999999999885 566555432 358999999999999762 3445566667777777 599999999
Q ss_pred CcCCHHHHHHHHHHHHh
Q psy4710 163 SKEGVREVFETATRAAL 179 (192)
Q Consensus 163 ~~~gi~~~~~~i~~~~~ 179 (192)
++.|++++|.++.+.+.
T Consensus 147 ~~~~v~~~~~~l~~~l~ 163 (164)
T cd04175 147 AKINVNEIFYDLVRQIN 163 (164)
T ss_pred CCCCHHHHHHHHHHHhh
Confidence 99999999999987653
No 31
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=100.00 E-value=4.5e-34 Score=193.60 Aligned_cols=162 Identities=31% Similarity=0.574 Sum_probs=138.0
Q ss_pred ceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEE
Q psy4710 5 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMC 83 (192)
Q Consensus 5 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v 83 (192)
.+||+++|++|+|||||++++.++.+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++++|++|+|
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 81 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 81 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence 47999999999999999999999988777666655444 44566788889999999999999999999999999999999
Q ss_pred EECCChhhhhchhhhhHHHHhhhC-CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccC
Q psy4710 84 FSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAK 162 (192)
Q Consensus 84 ~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 162 (192)
||++++++++.+. .|+..+.... ++.|+++|+||+|+... +.+..+++..+++..+ ++++++||+
T Consensus 82 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~~iiiv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~e~Sa~ 147 (166)
T cd04122 82 YDITRRSTYNHLS-SWLTDARNLTNPNTVIFLIGNKADLEAQ------------RDVTYEEAKQFADENG-LLFLECSAK 147 (166)
T ss_pred EECCCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEECcccccc------------cCcCHHHHHHHHHHcC-CEEEEEECC
Confidence 9999999999985 7777665543 57899999999999762 4566777888888777 599999999
Q ss_pred CcCCHHHHHHHHHHHHhh
Q psy4710 163 SKEGVREVFETATRAALQ 180 (192)
Q Consensus 163 ~~~gi~~~~~~i~~~~~~ 180 (192)
+|.|++++|..+.+.+.+
T Consensus 148 ~~~~i~e~f~~l~~~~~~ 165 (166)
T cd04122 148 TGENVEDAFLETAKKIYQ 165 (166)
T ss_pred CCCCHHHHHHHHHHHHhh
Confidence 999999999999987754
No 32
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=100.00 E-value=1.7e-33 Score=194.15 Aligned_cols=185 Identities=60% Similarity=1.001 Sum_probs=150.9
Q ss_pred ceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEEE
Q psy4710 5 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF 84 (192)
Q Consensus 5 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 84 (192)
+.||+++|++|+|||||++++..+.+...+.++....+...+.+++....+.+||++|++.+.......++.+++++++|
T Consensus 1 ~~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~ 80 (187)
T cd04129 1 RRKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGF 80 (187)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEE
Confidence 46999999999999999999998888776666665555556667778888999999999888877777788999999999
Q ss_pred ECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccCCc
Q psy4710 85 SIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSK 164 (192)
Q Consensus 85 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 164 (192)
|+++.++++.+...|...+....++.|+++|+||+|+.......+. ....+.+..+++..+++.++..+++++||++|
T Consensus 81 ~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~ 158 (187)
T cd04129 81 AVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAVAKEE--YRTQRFVPIQQGKRVAKEIGAKKYMECSALTG 158 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhhCcccccc--cccCCcCCHHHHHHHHHHhCCcEEEEccCCCC
Confidence 9999999999977899998877788999999999998653221111 11234566677888888888678999999999
Q ss_pred CCHHHHHHHHHHHHhhhcccccc-cccc
Q psy4710 165 EGVREVFETATRAALQVKKKKKG-RCRL 191 (192)
Q Consensus 165 ~gi~~~~~~i~~~~~~~~~~~~~-~c~~ 191 (192)
.|++++|+++.+.+..-+++.++ .|.+
T Consensus 159 ~~v~~~f~~l~~~~~~~~~~~~~~~~~~ 186 (187)
T cd04129 159 EGVDDVFEAATRAALLVRKSEPGAGCCI 186 (187)
T ss_pred CCHHHHHHHHHHHHhcccCcccccCccc
Confidence 99999999999988887777654 4544
No 33
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=100.00 E-value=1.2e-33 Score=191.24 Aligned_cols=161 Identities=32% Similarity=0.631 Sum_probs=136.6
Q ss_pred eeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEEE
Q psy4710 6 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF 84 (192)
Q Consensus 6 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 84 (192)
+||+++|++|+|||||++++.++.+...+.++.+..+ ...+..++..+.+.+||+||++.+...+...++++|++++||
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~ 81 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence 7999999999999999999999998877777666433 445556777899999999999999999999999999999999
Q ss_pred ECCChhhhhchhhhhHHHHhhhC-CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccCC
Q psy4710 85 SIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKS 163 (192)
Q Consensus 85 d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 163 (192)
|++++++++.+. .|...+.... .+.|+++|+||+|+.+. +....++..++++.++ ++++++||++
T Consensus 82 d~~~~~s~~~~~-~~~~~i~~~~~~~~piivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~~ 147 (165)
T cd01865 82 DITNEESFNAVQ-DWSTQIKTYSWDNAQVILVGNKCDMEDE------------RVVSSERGRQLADQLG-FEFFEASAKE 147 (165)
T ss_pred ECCCHHHHHHHH-HHHHHHHHhCCCCCCEEEEEECcccCcc------------cccCHHHHHHHHHHcC-CEEEEEECCC
Confidence 999999999884 6888877654 47899999999999652 3455666777777777 5899999999
Q ss_pred cCCHHHHHHHHHHHHhh
Q psy4710 164 KEGVREVFETATRAALQ 180 (192)
Q Consensus 164 ~~gi~~~~~~i~~~~~~ 180 (192)
+.|++++|+++.+.+.+
T Consensus 148 ~~gv~~l~~~l~~~~~~ 164 (165)
T cd01865 148 NINVKQVFERLVDIICD 164 (165)
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 99999999999887654
No 34
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=100.00 E-value=1.9e-33 Score=195.62 Aligned_cols=165 Identities=30% Similarity=0.592 Sum_probs=142.2
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy4710 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 82 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 82 (192)
..+||+++|++|+|||||++++.+..+...+.++.+..+ ...+...+..+.+.+||+||++.+...+..++++++++++
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~iil 84 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVIV 84 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEEE
Confidence 468999999999999999999999988777666665433 4455667778899999999999999999999999999999
Q ss_pred EEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccC
Q psy4710 83 CFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAK 162 (192)
Q Consensus 83 v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 162 (192)
|||++++++++.+. .|+..+....+..|++||+||+|+.. .+.+...+...++...+ ++++++||+
T Consensus 85 v~D~~~~~s~~~~~-~~~~~i~~~~~~~piivVgNK~Dl~~------------~~~~~~~~~~~~~~~~~-~~~~e~Sa~ 150 (199)
T cd04110 85 VYDVTNGESFVNVK-RWLQEIEQNCDDVCKVLVGNKNDDPE------------RKVVETEDAYKFAGQMG-ISLFETSAK 150 (199)
T ss_pred EEECCCHHHHHHHH-HHHHHHHHhCCCCCEEEEEECccccc------------ccccCHHHHHHHHHHcC-CEEEEEECC
Confidence 99999999999984 78888887777899999999999865 24456677778888777 699999999
Q ss_pred CcCCHHHHHHHHHHHHhhhc
Q psy4710 163 SKEGVREVFETATRAALQVK 182 (192)
Q Consensus 163 ~~~gi~~~~~~i~~~~~~~~ 182 (192)
+|.|++++|++|.+.+...+
T Consensus 151 ~~~gi~~lf~~l~~~~~~~~ 170 (199)
T cd04110 151 ENINVEEMFNCITELVLRAK 170 (199)
T ss_pred CCcCHHHHHHHHHHHHHHhh
Confidence 99999999999999998764
No 35
>KOG0093|consensus
Probab=100.00 E-value=2.1e-34 Score=181.46 Aligned_cols=166 Identities=30% Similarity=0.590 Sum_probs=148.2
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy4710 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 82 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 82 (192)
+-+|++++|...+|||||+-++.+..+......+.+..+ .+.+....+.+.+++|||.|++.++..+..++++++++|+
T Consensus 20 ymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfiL 99 (193)
T KOG0093|consen 20 YMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFIL 99 (193)
T ss_pred ceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEEE
Confidence 456999999999999999999999999887776666555 4444445577999999999999999999999999999999
Q ss_pred EEECCChhhhhchhhhhHHHHhhhC-CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEecc
Q psy4710 83 CFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSA 161 (192)
Q Consensus 83 v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 161 (192)
+||+++.+++..+ +.|...+..++ .+.|+|+++||+|+.. .+.++-+.++.++++++ +.||++||
T Consensus 100 myDitNeeSf~sv-qdw~tqIktysw~naqvilvgnKCDmd~------------eRvis~e~g~~l~~~LG-fefFEtSa 165 (193)
T KOG0093|consen 100 MYDITNEESFNSV-QDWITQIKTYSWDNAQVILVGNKCDMDS------------ERVISHERGRQLADQLG-FEFFETSA 165 (193)
T ss_pred EEecCCHHHHHHH-HHHHHHheeeeccCceEEEEecccCCcc------------ceeeeHHHHHHHHHHhC-hHHhhhcc
Confidence 9999999999998 68999999877 5899999999999987 58899999999999999 69999999
Q ss_pred CCcCCHHHHHHHHHHHHhhhcc
Q psy4710 162 KSKEGVREVFETATRAALQVKK 183 (192)
Q Consensus 162 ~~~~gi~~~~~~i~~~~~~~~~ 183 (192)
+.+.|++++|+.+...+.++..
T Consensus 166 K~NinVk~~Fe~lv~~Ic~kms 187 (193)
T KOG0093|consen 166 KENINVKQVFERLVDIICDKMS 187 (193)
T ss_pred cccccHHHHHHHHHHHHHHHhh
Confidence 9999999999999999887653
No 36
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=100.00 E-value=1.4e-33 Score=191.41 Aligned_cols=163 Identities=34% Similarity=0.625 Sum_probs=139.6
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy4710 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 82 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 82 (192)
..+||+++|++|+|||||++++.+..+...+.++.+..+ ...+.+.+..+.+.+||+||++.+...+...++++|++++
T Consensus 2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~ 81 (167)
T cd01867 2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (167)
T ss_pred cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEE
Confidence 468999999999999999999999998888777766444 4556678888999999999999999888889999999999
Q ss_pred EEECCChhhhhchhhhhHHHHhhhC-CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEecc
Q psy4710 83 CFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSA 161 (192)
Q Consensus 83 v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 161 (192)
|+|++++++++.+. .|+..+.... .+.|+++|+||+|+.+. +....+++..++..++ .+++++||
T Consensus 82 v~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~iiv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa 147 (167)
T cd01867 82 VYDITDEKSFENIR-NWMRNIEEHASEDVERMLVGNKCDMEEK------------RVVSKEEGEALADEYG-IKFLETSA 147 (167)
T ss_pred EEECcCHHHHHhHH-HHHHHHHHhCCCCCcEEEEEECcccccc------------cCCCHHHHHHHHHHcC-CEEEEEeC
Confidence 99999999999985 6888777654 57899999999999752 3455667777887777 59999999
Q ss_pred CCcCCHHHHHHHHHHHHhh
Q psy4710 162 KSKEGVREVFETATRAALQ 180 (192)
Q Consensus 162 ~~~~gi~~~~~~i~~~~~~ 180 (192)
+++.|++++|+++.+++..
T Consensus 148 ~~~~~v~~~~~~i~~~~~~ 166 (167)
T cd01867 148 KANINVEEAFFTLAKDIKK 166 (167)
T ss_pred CCCCCHHHHHHHHHHHHHh
Confidence 9999999999999998754
No 37
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=100.00 E-value=1.4e-33 Score=190.63 Aligned_cols=160 Identities=35% Similarity=0.564 Sum_probs=135.1
Q ss_pred ceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEEE
Q psy4710 5 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF 84 (192)
Q Consensus 5 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 84 (192)
++||+++|.+|+|||||++++..+.+...+.++........+..++....+.+||+||++.|...+..+++++|++++||
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~ 80 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVY 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchhheEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEE
Confidence 57999999999999999999999999887777666555666777888889999999999999999999999999999999
Q ss_pred ECCChhhhhchhhhhHHHHhhhC--CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccC
Q psy4710 85 SIDSPDSLENIPEKWTPEVKHFC--PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAK 162 (192)
Q Consensus 85 d~~~~~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 162 (192)
|++++++++.+. .|...+.... .+.|+++|+||+|+... +.+...+...++..++ .+++++||+
T Consensus 81 d~~~~~s~~~~~-~~~~~~~~~~~~~~~piviv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~ 146 (163)
T cd04176 81 SLVNQQTFQDIK-PMRDQIVRVKGYEKVPIILVGNKVDLESE------------REVSSAEGRALAEEWG-CPFMETSAK 146 (163)
T ss_pred ECCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECccchhc------------CccCHHHHHHHHHHhC-CEEEEecCC
Confidence 999999999985 5666665432 58999999999998652 3445556677777776 599999999
Q ss_pred CcCCHHHHHHHHHHHH
Q psy4710 163 SKEGVREVFETATRAA 178 (192)
Q Consensus 163 ~~~gi~~~~~~i~~~~ 178 (192)
++.|++++|.++.+.+
T Consensus 147 ~~~~v~~l~~~l~~~l 162 (163)
T cd04176 147 SKTMVNELFAEIVRQM 162 (163)
T ss_pred CCCCHHHHHHHHHHhc
Confidence 9999999999998754
No 38
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=100.00 E-value=1.8e-33 Score=190.67 Aligned_cols=161 Identities=33% Similarity=0.651 Sum_probs=137.9
Q ss_pred ceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEE
Q psy4710 5 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMC 83 (192)
Q Consensus 5 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v 83 (192)
.+||+++|++|+|||||++++.++.+...+.++.+..+ ...+...+..+.+.+||+||++.+...+..+++.+|++++|
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v 81 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 81 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence 47999999999999999999999988777666665433 45566777888999999999999998888899999999999
Q ss_pred EECCChhhhhchhhhhHHHHhhhC-CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccC
Q psy4710 84 FSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAK 162 (192)
Q Consensus 84 ~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 162 (192)
+|+++++++..+. .|+..+.... ++.|+++++||.|+... +.+..+++..++..++ ++++++||+
T Consensus 82 ~d~~~~~s~~~l~-~~~~~~~~~~~~~~~~iiv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~ 147 (166)
T cd01869 82 YDVTDQESFNNVK-QWLQEIDRYASENVNKLLVGNKCDLTDK------------RVVDYSEAQEFADELG-IPFLETSAK 147 (166)
T ss_pred EECcCHHHHHhHH-HHHHHHHHhCCCCCcEEEEEEChhcccc------------cCCCHHHHHHHHHHcC-CeEEEEECC
Confidence 9999999999995 6888877655 57999999999998652 4456677778888777 599999999
Q ss_pred CcCCHHHHHHHHHHHHh
Q psy4710 163 SKEGVREVFETATRAAL 179 (192)
Q Consensus 163 ~~~gi~~~~~~i~~~~~ 179 (192)
+|.|++++|..+.+.+.
T Consensus 148 ~~~~v~~~~~~i~~~~~ 164 (166)
T cd01869 148 NATNVEQAFMTMAREIK 164 (166)
T ss_pred CCcCHHHHHHHHHHHHH
Confidence 99999999999998875
No 39
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=100.00 E-value=1.9e-33 Score=197.94 Aligned_cols=163 Identities=32% Similarity=0.507 Sum_probs=137.6
Q ss_pred ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEE
Q psy4710 3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 81 (192)
Q Consensus 3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i 81 (192)
...+||+++|++|+|||||++++..+.+...+.++.+... ...+..+...+.+.+|||+|++.|...+..+++.++++|
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 90 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence 4678999999999999999999999998887777775443 445556777899999999999999999999999999999
Q ss_pred EEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEecc
Q psy4710 82 MCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSA 161 (192)
Q Consensus 82 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 161 (192)
+|||++++++++.+. .|+..+....++.|+++|+||+|+.. +.+..... .+++..+ ++|+++||
T Consensus 91 lvfD~~~~~s~~~i~-~w~~~i~~~~~~~piilvgNK~Dl~~-------------~~v~~~~~-~~~~~~~-~~~~e~SA 154 (219)
T PLN03071 91 IMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKN-------------RQVKAKQV-TFHRKKN-LQYYEISA 154 (219)
T ss_pred EEEeCCCHHHHHHHH-HHHHHHHHhCCCCcEEEEEEchhhhh-------------ccCCHHHH-HHHHhcC-CEEEEcCC
Confidence 999999999999984 79998887778999999999999854 12223333 5555555 68999999
Q ss_pred CCcCCHHHHHHHHHHHHhhh
Q psy4710 162 KSKEGVREVFETATRAALQV 181 (192)
Q Consensus 162 ~~~~gi~~~~~~i~~~~~~~ 181 (192)
++|.|++++|.+|.+.+.+.
T Consensus 155 k~~~~i~~~f~~l~~~~~~~ 174 (219)
T PLN03071 155 KSNYNFEKPFLYLARKLAGD 174 (219)
T ss_pred CCCCCHHHHHHHHHHHHHcC
Confidence 99999999999999988754
No 40
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=2.8e-33 Score=193.34 Aligned_cols=163 Identities=29% Similarity=0.529 Sum_probs=139.3
Q ss_pred eeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEEE
Q psy4710 6 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF 84 (192)
Q Consensus 6 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 84 (192)
+||+++|++|+|||||++++.++.+...+.++.+... ...+.+++..+.+.+||+||++.+...+...++.+|++++||
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~ 80 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY 80 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence 5899999999999999999999998876666665443 455667778899999999999999989999999999999999
Q ss_pred ECCChhhhhchhhhhHHHHhhhC-CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccCC
Q psy4710 85 SIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKS 163 (192)
Q Consensus 85 d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 163 (192)
|+++++++..+. .|+..+.... .+.|+++++||.|+.+. +.+....+..+++..+ ++++++||++
T Consensus 81 d~~~~~s~~~i~-~~~~~i~~~~~~~~~~ivv~nK~Dl~~~------------~~v~~~~~~~~~~~~~-~~~~evSa~~ 146 (188)
T cd04125 81 DVTDQESFENLK-FWINEINRYARENVIKVIVANKSDLVNN------------KVVDSNIAKSFCDSLN-IPFFETSAKQ 146 (188)
T ss_pred ECcCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEECCCCccc------------ccCCHHHHHHHHHHcC-CeEEEEeCCC
Confidence 999999999995 5888877654 36899999999998752 4456677777887777 4999999999
Q ss_pred cCCHHHHHHHHHHHHhhhc
Q psy4710 164 KEGVREVFETATRAALQVK 182 (192)
Q Consensus 164 ~~gi~~~~~~i~~~~~~~~ 182 (192)
+.|++++|.++.+.+..+.
T Consensus 147 ~~~i~~~f~~l~~~~~~~~ 165 (188)
T cd04125 147 SINVEEAFILLVKLIIKRL 165 (188)
T ss_pred CCCHHHHHHHHHHHHHHHh
Confidence 9999999999999998763
No 41
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=100.00 E-value=3e-33 Score=193.93 Aligned_cols=174 Identities=22% Similarity=0.401 Sum_probs=135.2
Q ss_pred eeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCccccc--------ccccCCC
Q psy4710 6 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRL--------RPLSYPD 76 (192)
Q Consensus 6 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~--------~~~~~~~ 76 (192)
+||+|+|.+|+|||||++++.++.+...+.|+.+... ...+.+++..+.+.+|||||...+... ....++.
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 5899999999999999999999999887777765333 445567788899999999997654322 2234689
Q ss_pred CCEEEEEEECCChhhhhchhhhhHHHHhhh----CCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcC
Q psy4710 77 TDVILMCFSIDSPDSLENIPEKWTPEVKHF----CPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKIN 152 (192)
Q Consensus 77 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~----~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (192)
+|++|+|||++++++++.+. .|...+... .++.|+++|+||+|+... +....++...++....
T Consensus 81 ad~iilv~D~~~~~S~~~~~-~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~------------~~~~~~~~~~~~~~~~ 147 (198)
T cd04142 81 SRAFILVYDICSPDSFHYVK-LLRQQILETRPAGNKEPPIVVVGNKRDQQRH------------RFAPRHVLSVLVRKSW 147 (198)
T ss_pred CCEEEEEEECCCHHHHHHHH-HHHHHHHHhcccCCCCCCEEEEEECcccccc------------ccccHHHHHHHHHHhc
Confidence 99999999999999999884 666655443 357999999999999652 3345555666654333
Q ss_pred CceEEEeccCCcCCHHHHHHHHHHHHhhhccc-----------cccccccC
Q psy4710 153 AFAYLECSAKSKEGVREVFETATRAALQVKKK-----------KKGRCRLL 192 (192)
Q Consensus 153 ~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~~~~-----------~~~~c~~~ 192 (192)
.++|+++||++|.|++++|+.+.+.+..+.++ ++.+|++|
T Consensus 148 ~~~~~e~Sak~g~~v~~lf~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (198)
T cd04142 148 KCGYLECSAKYNWHILLLFKELLISATTRGRSTHPALRLQGALHRERCSIM 198 (198)
T ss_pred CCcEEEecCCCCCCHHHHHHHHHHHhhccCCCccHHHHHHHHHhhcCcccC
Confidence 36999999999999999999999998887542 35678876
No 42
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=100.00 E-value=2.3e-33 Score=189.15 Aligned_cols=158 Identities=33% Similarity=0.632 Sum_probs=137.1
Q ss_pred eeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEEE
Q psy4710 6 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF 84 (192)
Q Consensus 6 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 84 (192)
+||+++|++|+|||||++++.++.+...+.++.+... ...+.+.+..+.+.+||++|++.+...+..+++.+|++++||
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY 80 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence 5899999999999999999999999877777766544 456677778899999999999999988888999999999999
Q ss_pred ECCChhhhhchhhhhHHHHhhhCC-CCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccCC
Q psy4710 85 SIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKS 163 (192)
Q Consensus 85 d~~~~~~~~~~~~~~~~~~~~~~~-~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 163 (192)
|++++++++.+. .|+..+....+ +.|+++|+||.|+.. .+.+..+++..+++.++ .+++++||++
T Consensus 81 d~~~~~sf~~~~-~~~~~~~~~~~~~~~iilvgnK~Dl~~------------~~~v~~~~~~~~~~~~~-~~~~e~Sa~~ 146 (161)
T cd04117 81 DISSERSYQHIM-KWVSDVDEYAPEGVQKILIGNKADEEQ------------KRQVGDEQGNKLAKEYG-MDFFETSACT 146 (161)
T ss_pred ECCCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEECccccc------------ccCCCHHHHHHHHHHcC-CEEEEEeCCC
Confidence 999999999995 68887766553 789999999999865 35567788888988887 5999999999
Q ss_pred cCCHHHHHHHHHHH
Q psy4710 164 KEGVREVFETATRA 177 (192)
Q Consensus 164 ~~gi~~~~~~i~~~ 177 (192)
|.|++++|.+|.+.
T Consensus 147 ~~~v~~~f~~l~~~ 160 (161)
T cd04117 147 NSNIKESFTRLTEL 160 (161)
T ss_pred CCCHHHHHHHHHhh
Confidence 99999999999764
No 43
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=100.00 E-value=1.6e-33 Score=193.30 Aligned_cols=163 Identities=28% Similarity=0.520 Sum_probs=137.2
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEEC----------CeEEEEEEEeCCCCCcccccccc
Q psy4710 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVD----------SKQVELALWDTAGQEDYDRLRPL 72 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~----------~~~~~~~l~D~~g~~~~~~~~~~ 72 (192)
+.+||+++|++|+|||||++++.++.+...+.++.+..+ ...+.+. +..+.+.+||+||++.+...+..
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 82 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTA 82 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHH
Confidence 468999999999999999999999998887776665433 2233332 45688999999999999999999
Q ss_pred cCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhC--CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHH
Q psy4710 73 SYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC--PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQK 150 (192)
Q Consensus 73 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (192)
+++++|++++|||+++++++..+. .|+..+.... ++.|+++|+||+|+.+ .+.+..++..++++.
T Consensus 83 ~~~~~~~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piiiv~nK~Dl~~------------~~~v~~~~~~~~~~~ 149 (180)
T cd04127 83 FFRDAMGFLLIFDLTNEQSFLNVR-NWMSQLQTHAYCENPDIVLCGNKADLED------------QRQVSEEQAKALADK 149 (180)
T ss_pred HhCCCCEEEEEEECCCHHHHHHHH-HHHHHHHHhcCCCCCcEEEEEeCccchh------------cCccCHHHHHHHHHH
Confidence 999999999999999999999995 7888776543 5789999999999976 245667778889988
Q ss_pred cCCceEEEeccCCcCCHHHHHHHHHHHHhh
Q psy4710 151 INAFAYLECSAKSKEGVREVFETATRAALQ 180 (192)
Q Consensus 151 ~~~~~~~~~Sa~~~~gi~~~~~~i~~~~~~ 180 (192)
++ ++++++||+++.|++++|+++.+.+.+
T Consensus 150 ~~-~~~~e~Sak~~~~v~~l~~~l~~~~~~ 178 (180)
T cd04127 150 YG-IPYFETSAATGTNVEKAVERLLDLVMK 178 (180)
T ss_pred cC-CeEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 88 599999999999999999999987764
No 44
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=100.00 E-value=2.8e-33 Score=196.07 Aligned_cols=172 Identities=26% Similarity=0.396 Sum_probs=135.0
Q ss_pred eeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEEEE
Q psy4710 6 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFS 85 (192)
Q Consensus 6 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 85 (192)
+||+++|.+|+|||||+++|..+.+.. +.++.+..+.. .....+.+.+|||||++.|...+..+++.+|++|+|||
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~---~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~D 76 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYL---KQWGPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYD 76 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEE---EEeeEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEE
Confidence 589999999999999999999998865 34544433221 12256789999999999999999999999999999999
Q ss_pred CCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccc-------hhhhhhccCCCCCHHHHHHHHHHcCC-----
Q psy4710 86 IDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNT-------IKELNKMKQEPVKPEEGRAMAQKINA----- 153 (192)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~----- 153 (192)
++++++++.+...|........++.|++||+||+|+..+... .........+.+..+++..+++..+.
T Consensus 77 vt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~~ 156 (220)
T cd04126 77 VSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLD 156 (220)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCcccccc
Confidence 999999999975565555444467999999999999752111 11111112467888999999988762
Q ss_pred --------ceEEEeccCCcCCHHHHHHHHHHHHhhh
Q psy4710 154 --------FAYLECSAKSKEGVREVFETATRAALQV 181 (192)
Q Consensus 154 --------~~~~~~Sa~~~~gi~~~~~~i~~~~~~~ 181 (192)
.+|+++||++|.||+++|..+.+.+...
T Consensus 157 ~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~~ 192 (220)
T cd04126 157 EDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLPL 192 (220)
T ss_pred ccccccccceEEEeeCCCCCCHHHHHHHHHHHHHHH
Confidence 4899999999999999999999888754
No 45
>KOG0087|consensus
Probab=100.00 E-value=8.7e-34 Score=189.31 Aligned_cols=167 Identities=33% Similarity=0.565 Sum_probs=153.4
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy4710 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 82 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 82 (192)
+-+||+++|++++|||-|+.++..+.|.....++.+-.+ .+.+.++++.++.++|||+||++|+.....+++.+.++++
T Consensus 13 ylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvGAll 92 (222)
T KOG0087|consen 13 YLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVGALL 92 (222)
T ss_pred eEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccceeEE
Confidence 578999999999999999999999999988888877554 7788899999999999999999999999999999999999
Q ss_pred EEECCChhhhhchhhhhHHHHhhhC-CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEecc
Q psy4710 83 CFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSA 161 (192)
Q Consensus 83 v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 161 (192)
|||++...+|+++ +.|+..++.+. +++++++|+||+||.+ .+.+..+++..+++..+ ..++++||
T Consensus 93 VYDITr~~Tfenv-~rWL~ELRdhad~nivimLvGNK~DL~~------------lraV~te~~k~~Ae~~~-l~f~EtSA 158 (222)
T KOG0087|consen 93 VYDITRRQTFENV-ERWLKELRDHADSNIVIMLVGNKSDLNH------------LRAVPTEDGKAFAEKEG-LFFLETSA 158 (222)
T ss_pred EEechhHHHHHHH-HHHHHHHHhcCCCCeEEEEeecchhhhh------------ccccchhhhHhHHHhcC-ceEEEecc
Confidence 9999999999988 69999999988 6999999999999987 58889999999999888 59999999
Q ss_pred CCcCCHHHHHHHHHHHHhhhccc
Q psy4710 162 KSKEGVREVFETATRAALQVKKK 184 (192)
Q Consensus 162 ~~~~gi~~~~~~i~~~~~~~~~~ 184 (192)
++..|+++.|..+...++..-.+
T Consensus 159 l~~tNVe~aF~~~l~~I~~~vs~ 181 (222)
T KOG0087|consen 159 LDATNVEKAFERVLTEIYKIVSK 181 (222)
T ss_pred cccccHHHHHHHHHHHHHHHHHH
Confidence 99999999999999888876443
No 46
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=100.00 E-value=2.7e-33 Score=188.93 Aligned_cols=159 Identities=35% Similarity=0.604 Sum_probs=134.0
Q ss_pred ceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEEE
Q psy4710 5 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF 84 (192)
Q Consensus 5 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 84 (192)
++||+++|++|+|||||++++.++.+...+.++....+...+.+++..+.+.+||+||++.+...+..+++.++++++|+
T Consensus 1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~ 80 (162)
T cd04138 1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF 80 (162)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheEEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEE
Confidence 47999999999999999999999998887777777666666677888888999999999999999999999999999999
Q ss_pred ECCChhhhhchhhhhHHHHhhhC--CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccC
Q psy4710 85 SIDSPDSLENIPEKWTPEVKHFC--PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAK 162 (192)
Q Consensus 85 d~~~~~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 162 (192)
|+++..+++.+. .|...+.+.. .+.|+++|+||+|+.. +.....+..++++..+ .+++++||+
T Consensus 81 ~~~~~~s~~~~~-~~~~~i~~~~~~~~~piivv~nK~Dl~~-------------~~~~~~~~~~~~~~~~-~~~~~~Sa~ 145 (162)
T cd04138 81 AINSRKSFEDIH-TYREQIKRVKDSDDVPMVLVGNKCDLAA-------------RTVSSRQGQDLAKSYG-IPYIETSAK 145 (162)
T ss_pred ECCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECccccc-------------ceecHHHHHHHHHHhC-CeEEEecCC
Confidence 999999998885 5666555442 4789999999999865 2344556667777666 589999999
Q ss_pred CcCCHHHHHHHHHHHH
Q psy4710 163 SKEGVREVFETATRAA 178 (192)
Q Consensus 163 ~~~gi~~~~~~i~~~~ 178 (192)
+|.|++++|+++.+.+
T Consensus 146 ~~~gi~~l~~~l~~~~ 161 (162)
T cd04138 146 TRQGVEEAFYTLVREI 161 (162)
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999999998654
No 47
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=100.00 E-value=2.2e-33 Score=189.48 Aligned_cols=159 Identities=40% Similarity=0.815 Sum_probs=145.7
Q ss_pred eEEEEcCCCCchhHHHHHHhhCCCCCcccCce-eeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEEEE
Q psy4710 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFS 85 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 85 (192)
||+++|++++|||||+++|.++.+...+.++. .+.....+..+...+.+.+||++|++.+...+...++++|++|+|||
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd 80 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD 80 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 79999999999999999999999988888876 45557778888999999999999999998888889999999999999
Q ss_pred CCChhhhhchhhhhHHHHhhhCC-CCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccCCc
Q psy4710 86 IDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSK 164 (192)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~-~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 164 (192)
++++++++.+. .|++.+....+ +.|++|++||.|+.. .+.++.++++++++.++ .+|+++||+++
T Consensus 81 ~~~~~S~~~~~-~~~~~i~~~~~~~~~iivvg~K~D~~~------------~~~v~~~~~~~~~~~~~-~~~~e~Sa~~~ 146 (162)
T PF00071_consen 81 VTDEESFENLK-KWLEEIQKYKPEDIPIIVVGNKSDLSD------------EREVSVEEAQEFAKELG-VPYFEVSAKNG 146 (162)
T ss_dssp TTBHHHHHTHH-HHHHHHHHHSTTTSEEEEEEETTTGGG------------GSSSCHHHHHHHHHHTT-SEEEEEBTTTT
T ss_pred ccccccccccc-cccccccccccccccceeeeccccccc------------cccchhhHHHHHHHHhC-CEEEEEECCCC
Confidence 99999999996 99999998887 799999999999876 36788899999999999 79999999999
Q ss_pred CCHHHHHHHHHHHHh
Q psy4710 165 EGVREVFETATRAAL 179 (192)
Q Consensus 165 ~gi~~~~~~i~~~~~ 179 (192)
.|+.++|..+.+.+.
T Consensus 147 ~~v~~~f~~~i~~i~ 161 (162)
T PF00071_consen 147 ENVKEIFQELIRKIL 161 (162)
T ss_dssp TTHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHh
Confidence 999999999998875
No 48
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=100.00 E-value=3.3e-33 Score=189.15 Aligned_cols=158 Identities=30% Similarity=0.520 Sum_probs=132.7
Q ss_pred eeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEEEE
Q psy4710 6 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFS 85 (192)
Q Consensus 6 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 85 (192)
+||+++|++|+|||||+++++++.+...+.++....+...+..+...+.+.+||+||++.+...+...++.++++++|||
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d 81 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYS 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheEEEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEEE
Confidence 79999999999999999999999988777777766666566677788999999999999999888888899999999999
Q ss_pred CCChhhhhchhhhhHHHHhhh----CCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEecc
Q psy4710 86 IDSPDSLENIPEKWTPEVKHF----CPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSA 161 (192)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~----~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 161 (192)
++++++++.+. .|...+... .++.|+++|+||+|+.. .+.+...++..++..++ ++++++||
T Consensus 82 ~~~~~s~~~~~-~~~~~i~~~~~~~~~~~piilv~nK~Dl~~------------~~~v~~~~~~~~~~~~~-~~~~e~SA 147 (165)
T cd04140 82 VTSKQSLEELK-PIYELICEIKGNNIEKIPIMLVGNKCDESH------------KREVSSNEGAACATEWN-CAFMETSA 147 (165)
T ss_pred CCCHHHHHHHH-HHHHHHHHHhcCCCCCCCEEEEEECccccc------------cCeecHHHHHHHHHHhC-CcEEEeec
Confidence 99999998885 566555543 25799999999999865 23455666677777776 58999999
Q ss_pred CCcCCHHHHHHHHHHH
Q psy4710 162 KSKEGVREVFETATRA 177 (192)
Q Consensus 162 ~~~~gi~~~~~~i~~~ 177 (192)
++|+|++++|++|...
T Consensus 148 ~~g~~v~~~f~~l~~~ 163 (165)
T cd04140 148 KTNHNVQELFQELLNL 163 (165)
T ss_pred CCCCCHHHHHHHHHhc
Confidence 9999999999998753
No 49
>KOG0079|consensus
Probab=100.00 E-value=2e-34 Score=181.69 Aligned_cols=163 Identities=33% Similarity=0.663 Sum_probs=151.2
Q ss_pred eeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEEE
Q psy4710 6 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF 84 (192)
Q Consensus 6 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 84 (192)
++.+|+|++|+|||+|+.+|....|...|..+++-.+ .+.+.+++..+++++||++|++.|+.+...++++.+++++||
T Consensus 9 fkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~vVY 88 (198)
T KOG0079|consen 9 FKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIVVY 88 (198)
T ss_pred HHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEEEE
Confidence 5788999999999999999999999999988877555 778889999999999999999999999999999999999999
Q ss_pred ECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccCCc
Q psy4710 85 SIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSK 164 (192)
Q Consensus 85 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 164 (192)
|+++.+||.+.. .|++.++..++..|-++|+||.|..+ .+.+..++++.|+.+.+ +.+|++|++++
T Consensus 89 DVTn~ESF~Nv~-rWLeei~~ncdsv~~vLVGNK~d~~~------------RrvV~t~dAr~~A~~mg-ie~FETSaKe~ 154 (198)
T KOG0079|consen 89 DVTNGESFNNVK-RWLEEIRNNCDSVPKVLVGNKNDDPE------------RRVVDTEDARAFALQMG-IELFETSAKEN 154 (198)
T ss_pred ECcchhhhHhHH-HHHHHHHhcCccccceecccCCCCcc------------ceeeehHHHHHHHHhcC-chheehhhhhc
Confidence 999999999995 89999999999999999999999987 57788899999999999 59999999999
Q ss_pred CCHHHHHHHHHHHHhhhc
Q psy4710 165 EGVREVFETATRAALQVK 182 (192)
Q Consensus 165 ~gi~~~~~~i~~~~~~~~ 182 (192)
+|++..|.-|.+.....+
T Consensus 155 ~NvE~mF~cit~qvl~~k 172 (198)
T KOG0079|consen 155 ENVEAMFHCITKQVLQAK 172 (198)
T ss_pred ccchHHHHHHHHHHHHHH
Confidence 999999999998887765
No 50
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=4.7e-33 Score=192.53 Aligned_cols=163 Identities=33% Similarity=0.608 Sum_probs=136.7
Q ss_pred eeEEEEcCCCCchhHHHHHHhhCCCCC-cccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEE
Q psy4710 6 KKLVIVGDGACGKTCLLIVFSKDQFPE-VYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMC 83 (192)
Q Consensus 6 ~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v 83 (192)
+||+++|++|+|||||++++.++.+.. .+.++.+..+ ...+.+++..+.+.+|||||++.+...+..+++.+|++|+|
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 80 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL 80 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence 589999999999999999999988754 3444544333 33456778889999999999999988888899999999999
Q ss_pred EECCChhhhhchhhhhHHHHhhhCC-CCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccC
Q psy4710 84 FSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAK 162 (192)
Q Consensus 84 ~d~~~~~~~~~~~~~~~~~~~~~~~-~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 162 (192)
+|++++++++++. .|+..+....+ +.|+++|+||+|+.. .+.+..++...++..++ .+++++||+
T Consensus 81 ~D~~~~~s~~~~~-~~~~~i~~~~~~~~piiiv~NK~Dl~~------------~~~~~~~~~~~l~~~~~-~~~~e~Sa~ 146 (191)
T cd04112 81 YDITNKASFDNIR-AWLTEIKEYAQEDVVIMLLGNKADMSG------------ERVVKREDGERLAKEYG-VPFMETSAK 146 (191)
T ss_pred EECCCHHHHHHHH-HHHHHHHHhCCCCCcEEEEEEcccchh------------ccccCHHHHHHHHHHcC-CeEEEEeCC
Confidence 9999999999885 68887776653 789999999999865 24456677778888777 599999999
Q ss_pred CcCCHHHHHHHHHHHHhhhc
Q psy4710 163 SKEGVREVFETATRAALQVK 182 (192)
Q Consensus 163 ~~~gi~~~~~~i~~~~~~~~ 182 (192)
+|.|++++|.+|.+.+....
T Consensus 147 ~~~~v~~l~~~l~~~~~~~~ 166 (191)
T cd04112 147 TGLNVELAFTAVAKELKHRK 166 (191)
T ss_pred CCCCHHHHHHHHHHHHHHhc
Confidence 99999999999999988773
No 51
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=100.00 E-value=4e-33 Score=189.16 Aligned_cols=160 Identities=30% Similarity=0.582 Sum_probs=136.9
Q ss_pred eeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEEE
Q psy4710 6 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF 84 (192)
Q Consensus 6 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 84 (192)
+||+++|++|+|||||++++.++.+...+.++.+..+ ...+..++..+.+.+|||||++.+...+..+++.+|++|+|+
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY 80 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence 5899999999999999999999998887777766444 456677788899999999999999888888999999999999
Q ss_pred ECCChhhhhchhhhhHHHHhhhC------CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEE
Q psy4710 85 SIDSPDSLENIPEKWTPEVKHFC------PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLE 158 (192)
Q Consensus 85 d~~~~~~~~~~~~~~~~~~~~~~------~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (192)
|++++.+++.+. .|...+.... .+.|+++|+||+|+.+ .+....++...++...+ .++++
T Consensus 81 D~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~------------~~~~~~~~~~~~~~~~~-~~~~~ 146 (168)
T cd04119 81 DVTDRQSFEALD-SWLKEMKQEGGPHGNMENIVVVVCANKIDLTK------------HRAVSEDEGRLWAESKG-FKYFE 146 (168)
T ss_pred ECCCHHHHHhHH-HHHHHHHHhccccccCCCceEEEEEEchhccc------------ccccCHHHHHHHHHHcC-CeEEE
Confidence 999999999884 7888776654 3689999999999864 24456777777887777 68999
Q ss_pred eccCCcCCHHHHHHHHHHHHh
Q psy4710 159 CSAKSKEGVREVFETATRAAL 179 (192)
Q Consensus 159 ~Sa~~~~gi~~~~~~i~~~~~ 179 (192)
+||+++.|++++|++|.+.++
T Consensus 147 ~Sa~~~~gi~~l~~~l~~~l~ 167 (168)
T cd04119 147 TSACTGEGVNEMFQTLFSSIV 167 (168)
T ss_pred EECCCCCCHHHHHHHHHHHHh
Confidence 999999999999999998875
No 52
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=100.00 E-value=6.4e-33 Score=186.98 Aligned_cols=159 Identities=26% Similarity=0.480 Sum_probs=132.2
Q ss_pred eeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeee-eeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEEE
Q psy4710 6 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFEN-YVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF 84 (192)
Q Consensus 6 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 84 (192)
+||+++|++|+|||||++++..+.+...+.++.... ......+++..+.+.+|||||++.|...+..+++.+|++++|+
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence 589999999999999999999998877665554433 2344566788899999999999999999999999999999999
Q ss_pred ECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccCCc
Q psy4710 85 SIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSK 164 (192)
Q Consensus 85 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 164 (192)
|++++.+++.+ +.|+..+....++.|+++|+||+|+... ...+...+++..+ ++++++||++|
T Consensus 81 d~~~~~s~~~~-~~~~~~i~~~~~~~p~ivv~nK~Dl~~~---------------~~~~~~~~~~~~~-~~~~~~Sa~~~ 143 (161)
T cd04124 81 DVTRKITYKNL-SKWYEELREYRPEIPCIVVANKIDLDPS---------------VTQKKFNFAEKHN-LPLYYVSAADG 143 (161)
T ss_pred ECCCHHHHHHH-HHHHHHHHHhCCCCcEEEEEECccCchh---------------HHHHHHHHHHHcC-CeEEEEeCCCC
Confidence 99999999888 4788888877778999999999998431 1223445566665 58999999999
Q ss_pred CCHHHHHHHHHHHHhhh
Q psy4710 165 EGVREVFETATRAALQV 181 (192)
Q Consensus 165 ~gi~~~~~~i~~~~~~~ 181 (192)
.|++++|+.+.+.+.+.
T Consensus 144 ~gv~~l~~~l~~~~~~~ 160 (161)
T cd04124 144 TNVVKLFQDAIKLAVSY 160 (161)
T ss_pred CCHHHHHHHHHHHHHhc
Confidence 99999999999887764
No 53
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=100.00 E-value=3.5e-33 Score=188.51 Aligned_cols=158 Identities=30% Similarity=0.570 Sum_probs=135.3
Q ss_pred eeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEEC--CeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy4710 6 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVD--SKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 82 (192)
Q Consensus 6 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 82 (192)
+||+++|++|+|||||++++.++.+...+.++.+..+ ...+.+. ...+.+.+||+||++.+...+..+++.+|++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~ 80 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence 5899999999999999999999988777666665544 3444555 677899999999999999999999999999999
Q ss_pred EEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccC
Q psy4710 83 CFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAK 162 (192)
Q Consensus 83 v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 162 (192)
|||++++++++.+. .|...+.....+.|+++|+||+|+... +.+..+++..+++.++ ++++++||+
T Consensus 81 v~d~~~~~s~~~l~-~~~~~~~~~~~~~p~iiv~nK~Dl~~~------------~~v~~~~~~~~~~~~~-~~~~~~Sa~ 146 (162)
T cd04106 81 VFSTTDRESFEAIE-SWKEKVEAECGDIPMVLVQTKIDLLDQ------------AVITNEEAEALAKRLQ-LPLFRTSVK 146 (162)
T ss_pred EEECCCHHHHHHHH-HHHHHHHHhCCCCCEEEEEEChhcccc------------cCCCHHHHHHHHHHcC-CeEEEEECC
Confidence 99999999999884 788888877779999999999999762 4456677788888887 599999999
Q ss_pred CcCCHHHHHHHHHHH
Q psy4710 163 SKEGVREVFETATRA 177 (192)
Q Consensus 163 ~~~gi~~~~~~i~~~ 177 (192)
++.|++++|++|...
T Consensus 147 ~~~~v~~l~~~l~~~ 161 (162)
T cd04106 147 DDFNVTELFEYLAEK 161 (162)
T ss_pred CCCCHHHHHHHHHHh
Confidence 999999999998754
No 54
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=100.00 E-value=9.3e-33 Score=187.95 Aligned_cols=170 Identities=64% Similarity=1.172 Sum_probs=142.9
Q ss_pred eeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEEEE
Q psy4710 6 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFS 85 (192)
Q Consensus 6 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 85 (192)
+||+++|++|+|||||+++|.+..+...+.++............+..+.+++||+||++.+.......++.+|++++|||
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 80 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFS 80 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEEE
Confidence 68999999999999999999999987777777776666666778889999999999999888888888899999999999
Q ss_pred CCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccCCcC
Q psy4710 86 IDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKE 165 (192)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 165 (192)
+++++++......|+..+....++.|+++|+||+|+.......... ......+..+++.++...++..+++++||+++.
T Consensus 81 ~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~ 159 (171)
T cd00157 81 VDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENTLKKL-EKGKEPITPEEGEKLAKEIGAIGYMECSALTQE 159 (171)
T ss_pred CCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchhhhhhc-ccCCCccCHHHHHHHHHHhCCeEEEEeecCCCC
Confidence 9999999998888998888877789999999999998754432211 111234556777888888886699999999999
Q ss_pred CHHHHHHHHHH
Q psy4710 166 GVREVFETATR 176 (192)
Q Consensus 166 gi~~~~~~i~~ 176 (192)
|+++++++|.+
T Consensus 160 gi~~l~~~i~~ 170 (171)
T cd00157 160 GVKEVFEEAIR 170 (171)
T ss_pred CHHHHHHHHhh
Confidence 99999999875
No 55
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=6.1e-33 Score=187.86 Aligned_cols=161 Identities=32% Similarity=0.562 Sum_probs=136.2
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeee-eeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy4710 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFEN-YVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 82 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 82 (192)
..+||+++|++|+|||||++++..+.+...+.++.+.. ....+.+++..+.+.+||+||++.+...+...++.+|++++
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll 81 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII 81 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 46899999999999999999999988877666665433 34566677777899999999999998888889999999999
Q ss_pred EEECCChhhhhchhhhhHHHHhhhC-CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEecc
Q psy4710 83 CFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSA 161 (192)
Q Consensus 83 v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 161 (192)
|||++++.+++.+. .|+..+.... .+.|+++|+||+|+... +......+..+++..+..+++++||
T Consensus 82 v~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~e~Sa 148 (165)
T cd01864 82 AYDITRRSSFESVP-HWIEEVEKYGASNVVLLLIGNKCDLEEQ------------REVLFEEACTLAEKNGMLAVLETSA 148 (165)
T ss_pred EEECcCHHHHHhHH-HHHHHHHHhCCCCCcEEEEEECcccccc------------cccCHHHHHHHHHHcCCcEEEEEEC
Confidence 99999999999884 7888776643 57999999999999763 3456677788888887668999999
Q ss_pred CCcCCHHHHHHHHHHH
Q psy4710 162 KSKEGVREVFETATRA 177 (192)
Q Consensus 162 ~~~~gi~~~~~~i~~~ 177 (192)
++|.|++++|+++.+.
T Consensus 149 ~~~~~v~~~~~~l~~~ 164 (165)
T cd01864 149 KESQNVEEAFLLMATE 164 (165)
T ss_pred CCCCCHHHHHHHHHHh
Confidence 9999999999999875
No 56
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=100.00 E-value=4.5e-33 Score=188.32 Aligned_cols=160 Identities=36% Similarity=0.581 Sum_probs=135.2
Q ss_pred eeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEEEE
Q psy4710 6 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFS 85 (192)
Q Consensus 6 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 85 (192)
+||+++|++|||||||++++.+..+...+.++....+......++..+.+.+||+||++++...+..+++.+|++++|+|
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 80 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYS 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEEE
Confidence 48999999999999999999999988877777766666667778888999999999999999998889999999999999
Q ss_pred CCChhhhhchhhhhHHHHhhhC--CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccCC
Q psy4710 86 IDSPDSLENIPEKWTPEVKHFC--PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKS 163 (192)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 163 (192)
++++++++.+. .|...+.+.. .+.|+++|+||+|+... +....+....+++.++ .+++++||++
T Consensus 81 ~~~~~s~~~~~-~~~~~i~~~~~~~~~pii~v~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~~ 146 (164)
T smart00173 81 ITDRQSFEEIK-KFREQILRVKDRDDVPIVLVGNKCDLESE------------RVVSTEEGKELARQWG-CPFLETSAKE 146 (164)
T ss_pred CCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECcccccc------------ceEcHHHHHHHHHHcC-CEEEEeecCC
Confidence 99999998885 5655554432 37899999999998652 3345566777777777 6999999999
Q ss_pred cCCHHHHHHHHHHHHh
Q psy4710 164 KEGVREVFETATRAAL 179 (192)
Q Consensus 164 ~~gi~~~~~~i~~~~~ 179 (192)
+.|++++|+++.+.+.
T Consensus 147 ~~~i~~l~~~l~~~~~ 162 (164)
T smart00173 147 RVNVDEAFYDLVREIR 162 (164)
T ss_pred CCCHHHHHHHHHHHHh
Confidence 9999999999988764
No 57
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=100.00 E-value=8.9e-33 Score=189.41 Aligned_cols=169 Identities=25% Similarity=0.469 Sum_probs=137.8
Q ss_pred eeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEEE
Q psy4710 6 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF 84 (192)
Q Consensus 6 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 84 (192)
+||+++|+.|+|||||++++.++.+...+.++.+..+ ...+..++..+.+.+||++|++.|...+..+++++|++++||
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~ 80 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF 80 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence 5899999999999999999999999888888876544 456777888899999999999999999999999999999999
Q ss_pred ECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccCCc
Q psy4710 85 SIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSK 164 (192)
Q Consensus 85 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 164 (192)
|++++++++.+. .|+..+....+..+.++|+||+|+....... ......+++.++++..+ .+++++||++|
T Consensus 81 D~t~~~s~~~i~-~~~~~~~~~~~~~~pilVgnK~Dl~~~~~~~-------~~~~~~~~~~~~a~~~~-~~~~e~SAk~g 151 (182)
T cd04128 81 DLTRKSTLNSIK-EWYRQARGFNKTAIPILVGTKYDLFADLPPE-------EQEEITKQARKYAKAMK-APLIFCSTSHS 151 (182)
T ss_pred ECcCHHHHHHHH-HHHHHHHHhCCCCCEEEEEEchhccccccch-------hhhhhHHHHHHHHHHcC-CEEEEEeCCCC
Confidence 999999999984 7888877654433337889999996421100 01112356777888887 59999999999
Q ss_pred CCHHHHHHHHHHHHhhhcc
Q psy4710 165 EGVREVFETATRAALQVKK 183 (192)
Q Consensus 165 ~gi~~~~~~i~~~~~~~~~ 183 (192)
.|++++|+++.+.+.+.+.
T Consensus 152 ~~v~~lf~~l~~~l~~~~~ 170 (182)
T cd04128 152 INVQKIFKIVLAKAFDLPL 170 (182)
T ss_pred CCHHHHHHHHHHHHHhcCC
Confidence 9999999999998876543
No 58
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=100.00 E-value=1.2e-32 Score=186.99 Aligned_cols=162 Identities=33% Similarity=0.596 Sum_probs=138.5
Q ss_pred ceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEEE
Q psy4710 5 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF 84 (192)
Q Consensus 5 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 84 (192)
++||+++|++|||||||++++.++.+...+.++....+...+..++..+.+.+||+||++.|...+...++.++++++|+
T Consensus 1 ~~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~ 80 (168)
T cd04177 1 DYKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVY 80 (168)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEE
Confidence 57999999999999999999999998877777776666666777888899999999999999999999999999999999
Q ss_pred ECCChhhhhchhhhhHHHHhhh--CCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccC
Q psy4710 85 SIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAK 162 (192)
Q Consensus 85 d~~~~~~~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 162 (192)
|++++++++... .|...+.+. ..+.|+++++||.|+... +....++...+++.++..+++++||+
T Consensus 81 ~~~~~~s~~~~~-~~~~~i~~~~~~~~~piiiv~nK~D~~~~------------~~~~~~~~~~~~~~~~~~~~~~~SA~ 147 (168)
T cd04177 81 SVTSEASLNELG-ELREQVLRIKDSDNVPMVLVGNKADLEDD------------RQVSREDGVSLSQQWGNVPFYETSAR 147 (168)
T ss_pred ECCCHHHHHHHH-HHHHHHHHhhCCCCCCEEEEEEChhcccc------------CccCHHHHHHHHHHcCCceEEEeeCC
Confidence 999999999885 577666543 347999999999998652 44556667777777776799999999
Q ss_pred CcCCHHHHHHHHHHHHh
Q psy4710 163 SKEGVREVFETATRAAL 179 (192)
Q Consensus 163 ~~~gi~~~~~~i~~~~~ 179 (192)
++.|++++|+++.+.+.
T Consensus 148 ~~~~i~~~f~~i~~~~~ 164 (168)
T cd04177 148 KRTNVDEVFIDLVRQII 164 (168)
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 99999999999987654
No 59
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=100.00 E-value=1.1e-32 Score=187.50 Aligned_cols=161 Identities=32% Similarity=0.607 Sum_probs=136.2
Q ss_pred ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEE
Q psy4710 3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 81 (192)
Q Consensus 3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i 81 (192)
+..+||+++|++|+|||||++++.++.+...+.++.+... ...+..++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 3 ~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i 82 (170)
T cd04116 3 SSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCL 82 (170)
T ss_pred ceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEE
Confidence 3568999999999999999999999988877666655433 456677888999999999999999999999999999999
Q ss_pred EEEECCChhhhhchhhhhHHHHhhhC-----CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceE
Q psy4710 82 MCFSIDSPDSLENIPEKWTPEVKHFC-----PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAY 156 (192)
Q Consensus 82 ~v~d~~~~~~~~~~~~~~~~~~~~~~-----~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (192)
+|||++++++++.+. .|...+.... .+.|+++|+||+|+.. +.+..++..++++.++..++
T Consensus 83 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-------------~~~~~~~~~~~~~~~~~~~~ 148 (170)
T cd04116 83 LTFAVDDSQSFQNLS-NWKKEFIYYADVKEPESFPFVVLGNKNDIPE-------------RQVSTEEAQAWCRENGDYPY 148 (170)
T ss_pred EEEECCCHHHHHhHH-HHHHHHHHhcccccCCCCcEEEEEECccccc-------------cccCHHHHHHHHHHCCCCeE
Confidence 999999999999984 6776554432 4689999999999853 44567778888888876689
Q ss_pred EEeccCCcCCHHHHHHHHHHH
Q psy4710 157 LECSAKSKEGVREVFETATRA 177 (192)
Q Consensus 157 ~~~Sa~~~~gi~~~~~~i~~~ 177 (192)
+++||+++.|++++|+.+.+.
T Consensus 149 ~e~Sa~~~~~v~~~~~~~~~~ 169 (170)
T cd04116 149 FETSAKDATNVAAAFEEAVRR 169 (170)
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 999999999999999999865
No 60
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=100.00 E-value=2.4e-32 Score=184.96 Aligned_cols=159 Identities=33% Similarity=0.551 Sum_probs=131.9
Q ss_pred eeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEEE
Q psy4710 6 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF 84 (192)
Q Consensus 6 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 84 (192)
+||+++|++|||||||+++++.+.+...+.++..... ...+..+...+.+.+|||||++.+...+...++.+|++|+||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence 5899999999999999999998888776666665433 344455778899999999999999888888999999999999
Q ss_pred ECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccCCc
Q psy4710 85 SIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSK 164 (192)
Q Consensus 85 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 164 (192)
|++++++++.+. .|...+.....+.|+++|+||+|+... ... .+..++.+... .+++++||++|
T Consensus 81 d~~~~~s~~~~~-~~~~~i~~~~~~~piiiv~nK~Dl~~~-------------~~~-~~~~~~~~~~~-~~~~e~Sa~~~ 144 (166)
T cd00877 81 DVTSRVTYKNVP-NWHRDLVRVCGNIPIVLCGNKVDIKDR-------------KVK-AKQITFHRKKN-LQYYEISAKSN 144 (166)
T ss_pred ECCCHHHHHHHH-HHHHHHHHhCCCCcEEEEEEchhcccc-------------cCC-HHHHHHHHHcC-CEEEEEeCCCC
Confidence 999999999984 798888887778999999999998631 122 22334555444 68999999999
Q ss_pred CCHHHHHHHHHHHHhh
Q psy4710 165 EGVREVFETATRAALQ 180 (192)
Q Consensus 165 ~gi~~~~~~i~~~~~~ 180 (192)
+|++++|+++.+.+..
T Consensus 145 ~~v~~~f~~l~~~~~~ 160 (166)
T cd00877 145 YNFEKPFLWLARKLLG 160 (166)
T ss_pred CChHHHHHHHHHHHHh
Confidence 9999999999988865
No 61
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=100.00 E-value=1e-32 Score=194.03 Aligned_cols=162 Identities=27% Similarity=0.443 Sum_probs=138.1
Q ss_pred eeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECC-eEEEEEEEeCCCCCcccccccccCCCCCEEEEE
Q psy4710 6 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDS-KQVELALWDTAGQEDYDRLRPLSYPDTDVILMC 83 (192)
Q Consensus 6 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v 83 (192)
+||+++|++|+|||||+++|.++.+...+.++.+..+ ...+.+++ ..+.+.+||+||++.+...+..+++.+|++|+|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV 80 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV 80 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence 5899999999999999999999999888877776433 45555544 578999999999999999999999999999999
Q ss_pred EECCChhhhhchhhhhHHHHhhhC----CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEe
Q psy4710 84 FSIDSPDSLENIPEKWTPEVKHFC----PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLEC 159 (192)
Q Consensus 84 ~d~~~~~~~~~~~~~~~~~~~~~~----~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (192)
||++++++++.+. .|...+.+.. .+.|+++|+||.|+.+ .+.+..++...+++.++ ++++++
T Consensus 81 ~D~t~~~s~~~~~-~w~~~l~~~~~~~~~~~piilVgNK~DL~~------------~~~v~~~~~~~~~~~~~-~~~~~i 146 (215)
T cd04109 81 YDVTNSQSFENLE-DWYSMVRKVLKSSETQPLVVLVGNKTDLEH------------NRTVKDDKHARFAQANG-MESCLV 146 (215)
T ss_pred EECCCHHHHHHHH-HHHHHHHHhccccCCCceEEEEEECccccc------------ccccCHHHHHHHHHHcC-CEEEEE
Confidence 9999999999984 7888887654 2468999999999965 35567778888888887 589999
Q ss_pred ccCCcCCHHHHHHHHHHHHhhh
Q psy4710 160 SAKSKEGVREVFETATRAALQV 181 (192)
Q Consensus 160 Sa~~~~gi~~~~~~i~~~~~~~ 181 (192)
||++|+|++++|+++.+.+...
T Consensus 147 SAktg~gv~~lf~~l~~~l~~~ 168 (215)
T cd04109 147 SAKTGDRVNLLFQQLAAELLGV 168 (215)
T ss_pred ECCCCCCHHHHHHHHHHHHHhc
Confidence 9999999999999999988753
No 62
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=100.00 E-value=1.2e-32 Score=186.44 Aligned_cols=161 Identities=32% Similarity=0.557 Sum_probs=137.1
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy4710 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 82 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 82 (192)
..+||+++|++|||||||++++.+..+...+.++.+..+ ...+..++..+.+.+||+||++.+...+...++.++++++
T Consensus 2 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 81 (165)
T cd01868 2 YLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALL 81 (165)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEE
Confidence 358999999999999999999999988777767766444 5566677777899999999999998888889999999999
Q ss_pred EEECCChhhhhchhhhhHHHHhhhCC-CCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEecc
Q psy4710 83 CFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSA 161 (192)
Q Consensus 83 v~d~~~~~~~~~~~~~~~~~~~~~~~-~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 161 (192)
|+|++++.+++.+. .|+..+....+ +.|+++|+||.|+.. .+....++...++...+ .+++++||
T Consensus 82 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~pi~vv~nK~Dl~~------------~~~~~~~~~~~~~~~~~-~~~~~~Sa 147 (165)
T cd01868 82 VYDITKKQTFENVE-RWLKELRDHADSNIVIMLVGNKSDLRH------------LRAVPTEEAKAFAEKNG-LSFIETSA 147 (165)
T ss_pred EEECcCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEECccccc------------cccCCHHHHHHHHHHcC-CEEEEEEC
Confidence 99999999999985 78888777654 599999999999865 24456667778887766 58999999
Q ss_pred CCcCCHHHHHHHHHHHH
Q psy4710 162 KSKEGVREVFETATRAA 178 (192)
Q Consensus 162 ~~~~gi~~~~~~i~~~~ 178 (192)
++|.|++++|+++...+
T Consensus 148 ~~~~~v~~l~~~l~~~i 164 (165)
T cd01868 148 LDGTNVEEAFKQLLTEI 164 (165)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 99999999999998765
No 63
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=100.00 E-value=1.3e-32 Score=186.08 Aligned_cols=160 Identities=35% Similarity=0.582 Sum_probs=134.7
Q ss_pred ceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEEE
Q psy4710 5 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF 84 (192)
Q Consensus 5 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 84 (192)
.+||+++|++|+|||||++++++..+...+.++....+.....+++..+.+.+|||||++++...+...++.+|++++||
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 81 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLVF 81 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceEEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEEE
Confidence 47999999999999999999999888777677766555556667888889999999999999999989999999999999
Q ss_pred ECCChhhhhchhhhhHHHHhhh--CCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccC
Q psy4710 85 SIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAK 162 (192)
Q Consensus 85 d~~~~~~~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 162 (192)
|++++.+++.+. .|...+... ..+.|+++++||+|+.. .+.+...+...+++..+ ++++++||+
T Consensus 82 d~~~~~s~~~~~-~~~~~~~~~~~~~~~piiiv~NK~Dl~~------------~~~~~~~~~~~~~~~~~-~~~~~~Sa~ 147 (164)
T cd04145 82 SVTDRGSFEEVD-KFHTQILRVKDRDEFPMILVGNKADLEH------------QRKVSREEGQELARKLK-IPYIETSAK 147 (164)
T ss_pred ECCCHHHHHHHH-HHHHHHHHHhCCCCCCEEEEeeCccccc------------cceecHHHHHHHHHHcC-CcEEEeeCC
Confidence 999999998885 566655543 24789999999999865 23455666777887777 599999999
Q ss_pred CcCCHHHHHHHHHHHH
Q psy4710 163 SKEGVREVFETATRAA 178 (192)
Q Consensus 163 ~~~gi~~~~~~i~~~~ 178 (192)
+|.|++++|+++.+.+
T Consensus 148 ~~~~i~~l~~~l~~~~ 163 (164)
T cd04145 148 DRLNVDKAFHDLVRVI 163 (164)
T ss_pred CCCCHHHHHHHHHHhh
Confidence 9999999999998764
No 64
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=100.00 E-value=2.4e-32 Score=188.80 Aligned_cols=170 Identities=43% Similarity=0.705 Sum_probs=130.8
Q ss_pred ceeEEEEcCCCCchhHHHH-HHhhCC-----CCCcccCcee--eeeeEE--------EEECCeEEEEEEEeCCCCCcccc
Q psy4710 5 RKKLVIVGDGACGKTCLLI-VFSKDQ-----FPEVYVPTVF--ENYVAD--------IEVDSKQVELALWDTAGQEDYDR 68 (192)
Q Consensus 5 ~~~i~v~G~~~~GKSsli~-~l~~~~-----~~~~~~~~~~--~~~~~~--------~~~~~~~~~~~l~D~~g~~~~~~ 68 (192)
.+||+++|+.|+|||||+. ++.+.. +...+.|+.. +.+... ..+++..+.+.+|||+|++..
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~-- 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDK-- 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhh--
Confidence 5899999999999999996 555443 3445556653 222221 146778899999999998752
Q ss_pred cccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchh-h----h--hhccCCCCCH
Q psy4710 69 LRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIK-E----L--NKMKQEPVKP 141 (192)
Q Consensus 69 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~-~----~--~~~~~~~~~~ 141 (192)
....+++++|++|+|||++++++++.+...|...+....++.|+++|+||+|+........ . + .....+.++.
T Consensus 80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~~ 159 (195)
T cd01873 80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILPP 159 (195)
T ss_pred hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhcccccccccccCCccCH
Confidence 4456789999999999999999999996679988887777899999999999865211000 0 0 0001367889
Q ss_pred HHHHHHHHHcCCceEEEeccCCcCCHHHHHHHHHHH
Q psy4710 142 EEGRAMAQKINAFAYLECSAKSKEGVREVFETATRA 177 (192)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~ 177 (192)
+++..+++.++. +|++|||++|.|++++|+.+.+.
T Consensus 160 ~e~~~~a~~~~~-~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 160 ETGRAVAKELGI-PYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred HHHHHHHHHhCC-EEEEcCCCCCCCHHHHHHHHHHh
Confidence 999999999995 99999999999999999998864
No 65
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=100.00 E-value=2.3e-32 Score=183.33 Aligned_cols=155 Identities=21% Similarity=0.366 Sum_probs=127.4
Q ss_pred eeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEEEE
Q psy4710 6 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFS 85 (192)
Q Consensus 6 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 85 (192)
+||+++|+.|+|||||+.++..+.+...+.+. ...+...+.+++..+.+.+||++|++.. .+++.+|++++|||
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~-~~~~~~~i~~~~~~~~l~i~D~~g~~~~-----~~~~~~~~~ilv~d 74 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPE-GGRFKKEVLVDGQSHLLLIRDEGGAPDA-----QFASWVDAVIFVFS 74 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCC-ccceEEEEEECCEEEEEEEEECCCCCch-----hHHhcCCEEEEEEE
Confidence 58999999999999999999998887665443 3344566778888889999999998652 35578999999999
Q ss_pred CCChhhhhchhhhhHHHHhhhC--CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccCC
Q psy4710 86 IDSPDSLENIPEKWTPEVKHFC--PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKS 163 (192)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 163 (192)
++++++|+.+. .|+..+.... ++.|+++|+||.|+.... .+.+..+++.++++..+.++|++|||++
T Consensus 75 ~~~~~sf~~~~-~~~~~i~~~~~~~~~piilvgnK~Dl~~~~----------~~~v~~~~~~~~~~~~~~~~~~e~SAk~ 143 (158)
T cd04103 75 LENEASFQTVY-NLYHQLSSYRNISEIPLILVGTQDAISESN----------PRVIDDARARQLCADMKRCSYYETCATY 143 (158)
T ss_pred CCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEeeHHHhhhcC----------CcccCHHHHHHHHHHhCCCcEEEEecCC
Confidence 99999999995 6877776654 578999999999985321 3567788888898877657999999999
Q ss_pred cCCHHHHHHHHHHH
Q psy4710 164 KEGVREVFETATRA 177 (192)
Q Consensus 164 ~~gi~~~~~~i~~~ 177 (192)
+.||+++|..+.+.
T Consensus 144 ~~~i~~~f~~~~~~ 157 (158)
T cd04103 144 GLNVERVFQEAAQK 157 (158)
T ss_pred CCCHHHHHHHHHhh
Confidence 99999999998764
No 66
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=100.00 E-value=2.7e-32 Score=183.97 Aligned_cols=158 Identities=35% Similarity=0.585 Sum_probs=134.4
Q ss_pred eeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEEE
Q psy4710 6 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF 84 (192)
Q Consensus 6 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 84 (192)
+||+++|++|+|||||++++.++.+...+.++.+... ...+.+++..+.+.+||+||++.+...+...++++|++++|+
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence 5899999999999999999999988776666655433 445667778889999999999999888889999999999999
Q ss_pred ECCChhhhhchhhhhHHHHhhhC-CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccCC
Q psy4710 85 SIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKS 163 (192)
Q Consensus 85 d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 163 (192)
|+++++++..+. .|+..+.... ++.|+++++||.|+.. .+.+..++...++...+ ++++++||++
T Consensus 81 d~~~~~s~~~~~-~~~~~~~~~~~~~~~iivv~nK~D~~~------------~~~~~~~~~~~~~~~~~-~~~~~~Sa~~ 146 (161)
T cd04113 81 DITNRTSFEALP-TWLSDARALASPNIVVILVGNKSDLAD------------QREVTFLEASRFAQENG-LLFLETSALT 146 (161)
T ss_pred ECCCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEEchhcch------------hccCCHHHHHHHHHHcC-CEEEEEECCC
Confidence 999999999885 6777765443 6899999999999876 24566777788888877 6999999999
Q ss_pred cCCHHHHHHHHHHH
Q psy4710 164 KEGVREVFETATRA 177 (192)
Q Consensus 164 ~~gi~~~~~~i~~~ 177 (192)
+.|++++|+++.+.
T Consensus 147 ~~~i~~~~~~~~~~ 160 (161)
T cd04113 147 GENVEEAFLKCARS 160 (161)
T ss_pred CCCHHHHHHHHHHh
Confidence 99999999999875
No 67
>PLN03110 Rab GTPase; Provisional
Probab=100.00 E-value=3.3e-32 Score=191.38 Aligned_cols=164 Identities=29% Similarity=0.538 Sum_probs=141.3
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy4710 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 82 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 82 (192)
..+||+++|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.++++|+
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~il 90 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALL 90 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEEE
Confidence 468999999999999999999999988777667666544 5566778888999999999999999999999999999999
Q ss_pred EEECCChhhhhchhhhhHHHHhhhC-CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEecc
Q psy4710 83 CFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSA 161 (192)
Q Consensus 83 v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 161 (192)
|||++++.+++.+. .|+..+.... .+.|+++|+||+|+.. .+.+..+....++...+ ++++++||
T Consensus 91 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piiiv~nK~Dl~~------------~~~~~~~~~~~l~~~~~-~~~~e~SA 156 (216)
T PLN03110 91 VYDITKRQTFDNVQ-RWLRELRDHADSNIVIMMAGNKSDLNH------------LRSVAEEDGQALAEKEG-LSFLETSA 156 (216)
T ss_pred EEECCChHHHHHHH-HHHHHHHHhCCCCCeEEEEEEChhccc------------ccCCCHHHHHHHHHHcC-CEEEEEeC
Confidence 99999999999884 7888777654 4799999999999865 35566677788887776 69999999
Q ss_pred CCcCCHHHHHHHHHHHHhhh
Q psy4710 162 KSKEGVREVFETATRAALQV 181 (192)
Q Consensus 162 ~~~~gi~~~~~~i~~~~~~~ 181 (192)
+++.|++++|+++.+.+...
T Consensus 157 ~~g~~v~~lf~~l~~~i~~~ 176 (216)
T PLN03110 157 LEATNVEKAFQTILLEIYHI 176 (216)
T ss_pred CCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999888764
No 68
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=100.00 E-value=4e-32 Score=184.34 Aligned_cols=163 Identities=31% Similarity=0.574 Sum_probs=137.4
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy4710 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 82 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 82 (192)
..+||+++|++|+|||||++++.+..+...+.++.+... ...+..++....+.+||+||++.+...+...++.+|++++
T Consensus 3 ~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~ 82 (168)
T cd01866 3 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALL 82 (168)
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEE
Confidence 358999999999999999999999988777666654433 4556677888899999999999998888889999999999
Q ss_pred EEECCChhhhhchhhhhHHHHhhh-CCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEecc
Q psy4710 83 CFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSA 161 (192)
Q Consensus 83 v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 161 (192)
|+|++++++++.+. .|+..+... .++.|+++|+||.|+... +....++...++...+ .+++++||
T Consensus 83 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~pvivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~e~Sa 148 (168)
T cd01866 83 VYDITRRETFNHLT-SWLEDARQHSNSNMTIMLIGNKCDLESR------------REVSYEEGEAFAKEHG-LIFMETSA 148 (168)
T ss_pred EEECCCHHHHHHHH-HHHHHHHHhCCCCCcEEEEEECcccccc------------cCCCHHHHHHHHHHcC-CEEEEEeC
Confidence 99999999999985 788877664 368999999999998752 3456677777887776 58999999
Q ss_pred CCcCCHHHHHHHHHHHHhh
Q psy4710 162 KSKEGVREVFETATRAALQ 180 (192)
Q Consensus 162 ~~~~gi~~~~~~i~~~~~~ 180 (192)
++++|++++|.++.+.+.+
T Consensus 149 ~~~~~i~~~~~~~~~~~~~ 167 (168)
T cd01866 149 KTASNVEEAFINTAKEIYE 167 (168)
T ss_pred CCCCCHHHHHHHHHHHHHh
Confidence 9999999999999988754
No 69
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=100.00 E-value=4.1e-32 Score=184.41 Aligned_cols=162 Identities=32% Similarity=0.537 Sum_probs=135.0
Q ss_pred eEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEEEE
Q psy4710 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFS 85 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 85 (192)
||+++|++|+|||||++++.++.+...+.++.+..+ ...+.+++..+.+.+||+||++.|...+...++.+|++++|||
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 81 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD 81 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence 799999999999999999999999888888776554 4556778888999999999999999999999999999999999
Q ss_pred CCChhhhhchhhhhHHHHhh-hCC-CCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccCC
Q psy4710 86 IDSPDSLENIPEKWTPEVKH-FCP-NVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKS 163 (192)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~-~~~-~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 163 (192)
+++++++..+. .|+..+.+ ..+ ..|+++|+||.|+.... ......+++..+++.++ .+++++||++
T Consensus 82 ~~~~~s~~~~~-~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~----------~~~~~~~~~~~~~~~~~-~~~~e~Sa~~ 149 (170)
T cd04108 82 LTDVASLEHTR-QWLEDALKENDPSSVLLFLVGTKKDLSSPA----------QYALMEQDAIKLAAEMQ-AEYWSVSALS 149 (170)
T ss_pred CcCHHHHHHHH-HHHHHHHHhcCCCCCeEEEEEEChhcCccc----------cccccHHHHHHHHHHcC-CeEEEEECCC
Confidence 99999999985 68877644 333 46799999999986531 11234556677777777 4899999999
Q ss_pred cCCHHHHHHHHHHHHhh
Q psy4710 164 KEGVREVFETATRAALQ 180 (192)
Q Consensus 164 ~~gi~~~~~~i~~~~~~ 180 (192)
+.|++++|+.+.+.+.+
T Consensus 150 g~~v~~lf~~l~~~~~~ 166 (170)
T cd04108 150 GENVREFFFRVAALTFE 166 (170)
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999999988754
No 70
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=3.5e-32 Score=190.53 Aligned_cols=165 Identities=33% Similarity=0.567 Sum_probs=138.5
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEE-CCeEEEEEEEeCCCCCcccccccccCCCCCEEE
Q psy4710 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEV-DSKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 81 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i 81 (192)
+.+||+++|++|+|||||++++.++.+...+.++.+..+ ...+.+ ++..+.+.+||+||++.+...+..+++++|+++
T Consensus 1 ~~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (211)
T cd04111 1 YQFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVL 80 (211)
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEE
Confidence 368999999999999999999999988877666665433 444444 456789999999999999998989999999999
Q ss_pred EEEECCChhhhhchhhhhHHHHhhhC--CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEe
Q psy4710 82 MCFSIDSPDSLENIPEKWTPEVKHFC--PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLEC 159 (192)
Q Consensus 82 ~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (192)
+|||++++++++.+. .|+..+.... ...|++||+||.|+.. .+.+..++...+++.++ .+++++
T Consensus 81 lv~D~~~~~Sf~~l~-~~~~~i~~~~~~~~~~iilvgNK~Dl~~------------~~~v~~~~~~~~~~~~~-~~~~e~ 146 (211)
T cd04111 81 LVFDITNRESFEHVH-DWLEEARSHIQPHRPVFILVGHKCDLES------------QRQVTREEAEKLAKDLG-MKYIET 146 (211)
T ss_pred EEEECCCHHHHHHHH-HHHHHHHHhcCCCCCeEEEEEEcccccc------------ccccCHHHHHHHHHHhC-CEEEEE
Confidence 999999999999995 6777776543 2567899999999875 34567777888888888 699999
Q ss_pred ccCCcCCHHHHHHHHHHHHhhhc
Q psy4710 160 SAKSKEGVREVFETATRAALQVK 182 (192)
Q Consensus 160 Sa~~~~gi~~~~~~i~~~~~~~~ 182 (192)
||+++.|++++|++|.+.+.+..
T Consensus 147 Sak~g~~v~e~f~~l~~~~~~~~ 169 (211)
T cd04111 147 SARTGDNVEEAFELLTQEIYERI 169 (211)
T ss_pred eCCCCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999887663
No 71
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=100.00 E-value=1.1e-31 Score=186.21 Aligned_cols=166 Identities=25% Similarity=0.468 Sum_probs=137.9
Q ss_pred eeEEEEcCCCCchhHHHHHHhhCCCCC-cccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEE
Q psy4710 6 KKLVIVGDGACGKTCLLIVFSKDQFPE-VYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMC 83 (192)
Q Consensus 6 ~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v 83 (192)
+||+++|++|+|||||+++|.++.+.. .+.++....+ ...+..++..+.+.+||+||++.+...+..+++.+|++++|
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv 80 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC 80 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence 589999999999999999999998864 4555655544 45667788889999999999999998888889999999999
Q ss_pred EECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccCC
Q psy4710 84 FSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKS 163 (192)
Q Consensus 84 ~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 163 (192)
||++++.+++.+ ..|+..+....++.|+++|+||+|+..... ..+.+...+...++..++ .+++++||++
T Consensus 81 ~d~~~~~s~~~~-~~~~~~i~~~~~~~piilv~nK~Dl~~~~~--------~~~~v~~~~~~~~~~~~~-~~~~~~Sa~~ 150 (193)
T cd04118 81 YDLTDSSSFERA-KFWVKELQNLEEHCKIYLCGTKSDLIEQDR--------SLRQVDFHDVQDFADEIK-AQHFETSSKT 150 (193)
T ss_pred EECCCHHHHHHH-HHHHHHHHhcCCCCCEEEEEEccccccccc--------ccCccCHHHHHHHHHHcC-CeEEEEeCCC
Confidence 999999999887 468888877666899999999999865321 123445566777777776 5899999999
Q ss_pred cCCHHHHHHHHHHHHhhh
Q psy4710 164 KEGVREVFETATRAALQV 181 (192)
Q Consensus 164 ~~gi~~~~~~i~~~~~~~ 181 (192)
+.|++++|+++.+.+...
T Consensus 151 ~~gv~~l~~~i~~~~~~~ 168 (193)
T cd04118 151 GQNVDELFQKVAEDFVSR 168 (193)
T ss_pred CCCHHHHHHHHHHHHHHh
Confidence 999999999999988765
No 72
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=100.00 E-value=5.1e-32 Score=183.08 Aligned_cols=161 Identities=38% Similarity=0.677 Sum_probs=136.4
Q ss_pred eeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEEE
Q psy4710 6 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF 84 (192)
Q Consensus 6 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 84 (192)
+||+++|++|+|||||++++.+..+...+.++.+... ...+..++..+.+.+||+||++.+...+..+++.+|++++|+
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence 5899999999999999999999888766666655443 455667777789999999999999988899999999999999
Q ss_pred ECCChhhhhchhhhhHHHHhhhC-CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccCC
Q psy4710 85 SIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKS 163 (192)
Q Consensus 85 d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 163 (192)
|++++.+++.+. .|+..+..+. ++.|+++++||+|+.. .+....+....+++..+ ++++++|+++
T Consensus 81 d~~~~~s~~~~~-~~l~~~~~~~~~~~pivvv~nK~D~~~------------~~~~~~~~~~~~~~~~~-~~~~e~Sa~~ 146 (164)
T smart00175 81 DITNRESFENLK-NWLKELREYADPNVVIMLVGNKSDLED------------QRQVSREEAEAFAEEHG-LPFFETSAKT 146 (164)
T ss_pred ECCCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEEchhccc------------ccCCCHHHHHHHHHHcC-CeEEEEeCCC
Confidence 999999999885 5888877655 6899999999999865 24455667777887777 5899999999
Q ss_pred cCCHHHHHHHHHHHHhh
Q psy4710 164 KEGVREVFETATRAALQ 180 (192)
Q Consensus 164 ~~gi~~~~~~i~~~~~~ 180 (192)
+.|++++++++.+.+.+
T Consensus 147 ~~~i~~l~~~i~~~~~~ 163 (164)
T smart00175 147 NTNVEEAFEELAREILK 163 (164)
T ss_pred CCCHHHHHHHHHHHHhh
Confidence 99999999999988754
No 73
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=100.00 E-value=5e-32 Score=187.56 Aligned_cols=155 Identities=29% Similarity=0.518 Sum_probs=131.8
Q ss_pred EcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEEEECCCh
Q psy4710 11 VGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSP 89 (192)
Q Consensus 11 ~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~ 89 (192)
+|.+|+|||||+++++.+.+...+.++.+... ...+.++...+.+.+|||+|++.|..++..+++++|++|+|||++++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~ 80 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR 80 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence 69999999999999999888877777765443 55567788889999999999999999999999999999999999999
Q ss_pred hhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccCCcCCHHH
Q psy4710 90 DSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVRE 169 (192)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 169 (192)
.+++.+. .|...+.+..++.|+++|+||+|+.. +.+..+. ..+++..+ ++|+++||++|.||++
T Consensus 81 ~S~~~i~-~w~~~i~~~~~~~piilvgNK~Dl~~-------------~~v~~~~-~~~~~~~~-~~~~e~SAk~~~~v~~ 144 (200)
T smart00176 81 VTYKNVP-NWHRDLVRVCENIPIVLCGNKVDVKD-------------RKVKAKS-ITFHRKKN-LQYYDISAKSNYNFEK 144 (200)
T ss_pred HHHHHHH-HHHHHHHHhCCCCCEEEEEECccccc-------------ccCCHHH-HHHHHHcC-CEEEEEeCCCCCCHHH
Confidence 9999985 79998888778999999999999853 1222222 35666666 6999999999999999
Q ss_pred HHHHHHHHHhhh
Q psy4710 170 VFETATRAALQV 181 (192)
Q Consensus 170 ~~~~i~~~~~~~ 181 (192)
+|.++.+.+...
T Consensus 145 ~F~~l~~~i~~~ 156 (200)
T smart00176 145 PFLWLARKLIGD 156 (200)
T ss_pred HHHHHHHHHHhc
Confidence 999999988664
No 74
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=100.00 E-value=5.4e-32 Score=193.02 Aligned_cols=163 Identities=25% Similarity=0.405 Sum_probs=134.8
Q ss_pred eeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEEEE
Q psy4710 6 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFS 85 (192)
Q Consensus 6 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 85 (192)
+||+++|.+|+|||||+++++++.+...+.++..+.....+.+++..+.+.+|||+|++.|...+...+..+|++|+|||
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfd 80 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVFS 80 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChhHhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEEe
Confidence 58999999999999999999999998877777766666667788888999999999999988887778889999999999
Q ss_pred CCChhhhhchhhhhHHHHhh----------hCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCce
Q psy4710 86 IDSPDSLENIPEKWTPEVKH----------FCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFA 155 (192)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~----------~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (192)
+++.++|+.+. .|...+.. ...+.|+++|+||+|+... +.+..++..++......++
T Consensus 81 v~~~~Sf~~i~-~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~------------~~v~~~ei~~~~~~~~~~~ 147 (247)
T cd04143 81 LDNRESFEEVC-RLREQILETKSCLKNKTKENVKIPMVICGNKADRDFP------------REVQRDEVEQLVGGDENCA 147 (247)
T ss_pred CCCHHHHHHHH-HHHHHHHHhhcccccccccCCCCcEEEEEECccchhc------------cccCHHHHHHHHHhcCCCE
Confidence 99999999984 66665543 2247999999999999652 3455566666655443468
Q ss_pred EEEeccCCcCCHHHHHHHHHHHHhhh
Q psy4710 156 YLECSAKSKEGVREVFETATRAALQV 181 (192)
Q Consensus 156 ~~~~Sa~~~~gi~~~~~~i~~~~~~~ 181 (192)
++++||+++.|++++|++|...+...
T Consensus 148 ~~evSAktg~gI~elf~~L~~~~~~p 173 (247)
T cd04143 148 YFEVSAKKNSNLDEMFRALFSLAKLP 173 (247)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHhccc
Confidence 99999999999999999999877544
No 75
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=100.00 E-value=8.6e-32 Score=181.86 Aligned_cols=160 Identities=34% Similarity=0.617 Sum_probs=136.0
Q ss_pred ceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEE
Q psy4710 5 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMC 83 (192)
Q Consensus 5 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v 83 (192)
++||+++|++|+|||||++++.+..+.....++.+..+ ...+.++...+.+.+||+||++.+...+...++++|++++|
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 80 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence 58999999999999999999999998776566655433 56677888889999999999999988888899999999999
Q ss_pred EECCChhhhhchhhhhHHHHhhhC-CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccC
Q psy4710 84 FSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAK 162 (192)
Q Consensus 84 ~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 162 (192)
+|+++++++.... .|+..+.... ++.|+++++||+|+... +.....+...+....+ ++++++||+
T Consensus 81 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~~iivv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~ 146 (163)
T cd01860 81 YDITSEESFEKAK-SWVKELQRNASPNIIIALVGNKADLESK------------RQVSTEEAQEYADENG-LLFFETSAK 146 (163)
T ss_pred EECcCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEECcccccc------------CcCCHHHHHHHHHHcC-CEEEEEECC
Confidence 9999999999884 7777766554 67999999999998752 3455666777787777 689999999
Q ss_pred CcCCHHHHHHHHHHHH
Q psy4710 163 SKEGVREVFETATRAA 178 (192)
Q Consensus 163 ~~~gi~~~~~~i~~~~ 178 (192)
+|.|++++|+++.+.+
T Consensus 147 ~~~~v~~l~~~l~~~l 162 (163)
T cd01860 147 TGENVNELFTEIAKKL 162 (163)
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999999998875
No 76
>KOG0086|consensus
Probab=100.00 E-value=8.5e-33 Score=175.41 Aligned_cols=164 Identities=32% Similarity=0.539 Sum_probs=148.1
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy4710 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 82 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 82 (192)
+-+|++++|+.|+|||.|+.+|..+++.+....+.+..+ .+.+....+.+++++|||+|+++|++....+++++.+.++
T Consensus 8 yLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAlL 87 (214)
T KOG0086|consen 8 YLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALL 87 (214)
T ss_pred hhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccceEE
Confidence 457999999999999999999999999998888877655 6667778899999999999999999999999999999999
Q ss_pred EEECCChhhhhchhhhhHHHHhhhC-CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEecc
Q psy4710 83 CFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSA 161 (192)
Q Consensus 83 v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 161 (192)
|||+++.++|..+. .|+...+... +++-+++++||.|+.+ .+.++..++.+|+++.. +-+.++||
T Consensus 88 VYD~TsrdsfnaLt-nWL~DaR~lAs~nIvviL~GnKkDL~~------------~R~VtflEAs~FaqEne-l~flETSa 153 (214)
T KOG0086|consen 88 VYDITSRDSFNALT-NWLTDARTLASPNIVVILCGNKKDLDP------------EREVTFLEASRFAQENE-LMFLETSA 153 (214)
T ss_pred EEeccchhhHHHHH-HHHHHHHhhCCCcEEEEEeCChhhcCh------------hhhhhHHHHHhhhcccc-eeeeeecc
Confidence 99999999999995 8999888766 4788899999999988 57899999999999988 48899999
Q ss_pred CCcCCHHHHHHHHHHHHhhh
Q psy4710 162 KSKEGVREVFETATRAALQV 181 (192)
Q Consensus 162 ~~~~gi~~~~~~i~~~~~~~ 181 (192)
++|+|++|.|-...+.+..+
T Consensus 154 ~TGeNVEEaFl~c~~tIl~k 173 (214)
T KOG0086|consen 154 LTGENVEEAFLKCARTILNK 173 (214)
T ss_pred cccccHHHHHHHHHHHHHHH
Confidence 99999999999888887765
No 77
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=100.00 E-value=1.2e-31 Score=182.42 Aligned_cols=160 Identities=31% Similarity=0.573 Sum_probs=135.1
Q ss_pred ceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCccc-ccccccCCCCCEEEE
Q psy4710 5 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYD-RLRPLSYPDTDVILM 82 (192)
Q Consensus 5 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~-~~~~~~~~~~~~~i~ 82 (192)
.+||+++|++|+|||||+++++.+.+...+.++.+..+ ...+.+++..+.+.+||+||++.+. ..+..+++++|++++
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~ 81 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF 81 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence 58999999999999999999999988776666655333 4556678888999999999998886 467788899999999
Q ss_pred EEECCChhhhhchhhhhHHHHhhhC--CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEec
Q psy4710 83 CFSIDSPDSLENIPEKWTPEVKHFC--PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECS 160 (192)
Q Consensus 83 v~d~~~~~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 160 (192)
|||++++.+++.+. .|...+.... .+.|+++|+||+|+.. .+.+...+..+++..++ .+++++|
T Consensus 82 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~iiv~nK~Dl~~------------~~~~~~~~~~~~~~~~~-~~~~e~S 147 (170)
T cd04115 82 VYDVTNMASFHSLP-SWIEECEQHSLPNEVPRILVGNKCDLRE------------QIQVPTDLAQRFADAHS-MPLFETS 147 (170)
T ss_pred EEECCCHHHHHhHH-HHHHHHHHhcCCCCCCEEEEEECccchh------------hcCCCHHHHHHHHHHcC-CcEEEEe
Confidence 99999999999985 7888777653 5799999999999876 34566777888888876 6999999
Q ss_pred cCC---cCCHHHHHHHHHHHH
Q psy4710 161 AKS---KEGVREVFETATRAA 178 (192)
Q Consensus 161 a~~---~~gi~~~~~~i~~~~ 178 (192)
|++ +.|++++|..+.+.+
T Consensus 148 a~~~~~~~~i~~~f~~l~~~~ 168 (170)
T cd04115 148 AKDPSENDHVEAIFMTLAHKL 168 (170)
T ss_pred ccCCcCCCCHHHHHHHHHHHh
Confidence 999 899999999998765
No 78
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=100.00 E-value=1.2e-31 Score=182.71 Aligned_cols=164 Identities=32% Similarity=0.580 Sum_probs=135.3
Q ss_pred eeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEEE
Q psy4710 6 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF 84 (192)
Q Consensus 6 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 84 (192)
+||+++|++|+|||||++++.+..+.....++.+..+ ...+...+..+.+.+||+||++.+...+..+++.+|++|+++
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 80 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence 5899999999999999999999988776666655333 445667778889999999999999999999999999999999
Q ss_pred ECCChhhhhchhhhhHHHHhhhC-----CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEe
Q psy4710 85 SIDSPDSLENIPEKWTPEVKHFC-----PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLEC 159 (192)
Q Consensus 85 d~~~~~~~~~~~~~~~~~~~~~~-----~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (192)
|++++.+++... .|...+.... .+.|+++|+||+|+..+ +....++...+.+..+..+++++
T Consensus 81 d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~~~ 147 (172)
T cd01862 81 DVTNPKSFESLD-SWRDEFLIQASPSDPENFPFVVLGNKIDLEEK------------RQVSTKKAQQWCQSNGNIPYFET 147 (172)
T ss_pred ECCCHHHHHHHH-HHHHHHHHhcCccCCCCceEEEEEECcccccc------------cccCHHHHHHHHHHcCCceEEEE
Confidence 999999888874 6766554433 27999999999999752 33456667777777776799999
Q ss_pred ccCCcCCHHHHHHHHHHHHhhhc
Q psy4710 160 SAKSKEGVREVFETATRAALQVK 182 (192)
Q Consensus 160 Sa~~~~gi~~~~~~i~~~~~~~~ 182 (192)
|+++|.|++++|+++.+.+.+..
T Consensus 148 Sa~~~~gv~~l~~~i~~~~~~~~ 170 (172)
T cd01862 148 SAKEAINVEQAFETIARKALEQE 170 (172)
T ss_pred ECCCCCCHHHHHHHHHHHHHhcc
Confidence 99999999999999999887753
No 79
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=100.00 E-value=5.9e-32 Score=183.05 Aligned_cols=159 Identities=30% Similarity=0.498 Sum_probs=131.4
Q ss_pred eEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCc-ccccccccCCCCCEEEEEEE
Q psy4710 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQED-YDRLRPLSYPDTDVILMCFS 85 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-~~~~~~~~~~~~~~~i~v~d 85 (192)
||+++|++|+|||||+++++...+...+.++....+.....+++..+.+.+||+||+.. +...+...++.+|++++|+|
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d 80 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVYS 80 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEEE
Confidence 69999999999999999999988877666666555555667788889999999999885 34456677889999999999
Q ss_pred CCChhhhhchhhhhHHHHhhh---CCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccC
Q psy4710 86 IDSPDSLENIPEKWTPEVKHF---CPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAK 162 (192)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~---~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 162 (192)
++++++++.+. .|...+... ..+.|+++|+||+|+.. .+.+..++...+++..+ .+++++||+
T Consensus 81 ~~~~~s~~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~------------~~~v~~~~~~~~~~~~~-~~~~e~Sa~ 146 (165)
T cd04146 81 ITDRSSFDEIS-QLKQLIREIKKRDREIPVILVGNKADLLH------------YRQVSTEEGEKLASELG-CLFFEVSAA 146 (165)
T ss_pred CCCHHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECCchHH------------hCccCHHHHHHHHHHcC-CEEEEeCCC
Confidence 99999999884 677776664 34899999999999865 24566777788888887 599999999
Q ss_pred Cc-CCHHHHHHHHHHHHh
Q psy4710 163 SK-EGVREVFETATRAAL 179 (192)
Q Consensus 163 ~~-~gi~~~~~~i~~~~~ 179 (192)
++ .|++++|..+.+.+.
T Consensus 147 ~~~~~v~~~f~~l~~~~~ 164 (165)
T cd04146 147 EDYDGVHSVFHELCREVR 164 (165)
T ss_pred CCchhHHHHHHHHHHHHh
Confidence 99 599999999988664
No 80
>PLN03118 Rab family protein; Provisional
Probab=100.00 E-value=1.9e-31 Score=187.18 Aligned_cols=165 Identities=30% Similarity=0.605 Sum_probs=136.6
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeee-eeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy4710 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFEN-YVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 82 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 82 (192)
..+||+++|++|+|||||+++|++..+... .++.+.. ....+.+++..+.+.+|||||++.|...+..+++.+|++++
T Consensus 13 ~~~kv~ivG~~~vGKTsli~~l~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~vl 91 (211)
T PLN03118 13 LSFKILLIGDSGVGKSSLLVSFISSSVEDL-APTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGIIL 91 (211)
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCCc-CCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEE
Confidence 578999999999999999999999887543 4444433 34456677778899999999999999999999999999999
Q ss_pred EEECCChhhhhchhhhhHHHHhhhC--CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEec
Q psy4710 83 CFSIDSPDSLENIPEKWTPEVKHFC--PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECS 160 (192)
Q Consensus 83 v~d~~~~~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 160 (192)
|||++++++++.+.+.|...+.... .+.|+++|+||+|+... +.+..++...++...+ ++++++|
T Consensus 92 v~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~------------~~i~~~~~~~~~~~~~-~~~~e~S 158 (211)
T PLN03118 92 VYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESE------------RDVSREEGMALAKEHG-CLFLECS 158 (211)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccc------------CccCHHHHHHHHHHcC-CEEEEEe
Confidence 9999999999999777877766443 46899999999998752 3455666777777776 5899999
Q ss_pred cCCcCCHHHHHHHHHHHHhhhc
Q psy4710 161 AKSKEGVREVFETATRAALQVK 182 (192)
Q Consensus 161 a~~~~gi~~~~~~i~~~~~~~~ 182 (192)
|+++.|++++|++|.+.+....
T Consensus 159 Ak~~~~v~~l~~~l~~~~~~~~ 180 (211)
T PLN03118 159 AKTRENVEQCFEELALKIMEVP 180 (211)
T ss_pred CCCCCCHHHHHHHHHHHHHhhh
Confidence 9999999999999999987654
No 81
>KOG0091|consensus
Probab=100.00 E-value=1.4e-32 Score=176.27 Aligned_cols=165 Identities=32% Similarity=0.573 Sum_probs=145.4
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEE-CCeEEEEEEEeCCCCCcccccccccCCCCCEEE
Q psy4710 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEV-DSKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 81 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i 81 (192)
+.++++++|++-+|||+|+..+..+++++-.+|+.+-.+ .+-++. ++..+++++|||+|+++|++.+..+++++-+++
T Consensus 7 yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgvl 86 (213)
T KOG0091|consen 7 YQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGVL 86 (213)
T ss_pred EEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccceE
Confidence 578999999999999999999999999999888887544 333333 567899999999999999999999999999999
Q ss_pred EEEECCChhhhhchhhhhHHHHhhhC--CCCcE-EEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEE
Q psy4710 82 MCFSIDSPDSLENIPEKWTPEVKHFC--PNVPI-ILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLE 158 (192)
Q Consensus 82 ~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~p~-ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (192)
+|||+++.++|+++ +.|+.....+. |.+++ .+|++|+|+.. .++++.++++.++.+.+ ..|++
T Consensus 87 lvyditnr~sfehv-~~w~~ea~m~~q~P~k~VFlLVGhKsDL~S------------qRqVt~EEaEklAa~hg-M~FVE 152 (213)
T KOG0091|consen 87 LVYDITNRESFEHV-ENWVKEAAMATQGPDKVVFLLVGHKSDLQS------------QRQVTAEEAEKLAASHG-MAFVE 152 (213)
T ss_pred EEEeccchhhHHHH-HHHHHHHHHhcCCCCeeEEEEeccccchhh------------hccccHHHHHHHHHhcC-ceEEE
Confidence 99999999999999 58888776654 45555 68999999987 68999999999999999 59999
Q ss_pred eccCCcCCHHHHHHHHHHHHhhhc
Q psy4710 159 CSAKSKEGVREVFETATRAALQVK 182 (192)
Q Consensus 159 ~Sa~~~~gi~~~~~~i~~~~~~~~ 182 (192)
+||++|.|+++.|..+.+.++..-
T Consensus 153 TSak~g~NVeEAF~mlaqeIf~~i 176 (213)
T KOG0091|consen 153 TSAKNGCNVEEAFDMLAQEIFQAI 176 (213)
T ss_pred ecccCCCcHHHHHHHHHHHHHHHH
Confidence 999999999999999998887753
No 82
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=100.00 E-value=2e-31 Score=179.66 Aligned_cols=158 Identities=36% Similarity=0.599 Sum_probs=131.8
Q ss_pred eeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeee-eeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEEE
Q psy4710 6 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFEN-YVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF 84 (192)
Q Consensus 6 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 84 (192)
+||+++|++|+|||||++++++..+...+.++.+.. ....+..++..+.+.+||+||+..+...+...++.+|++++|+
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 80 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 489999999999999999999998877766666543 3455666777789999999999999888888999999999999
Q ss_pred ECCChhhhhchhhhhHHHHhhhC-CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccCC
Q psy4710 85 SIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKS 163 (192)
Q Consensus 85 d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 163 (192)
|++++++++.+. .|+..+.... .+.|+++++||+|+.. ......++...+++..+ ++++++||++
T Consensus 81 d~~~~~s~~~~~-~~~~~~~~~~~~~~~iilv~nK~D~~~------------~~~~~~~~~~~~~~~~~-~~~~~~Sa~~ 146 (161)
T cd01861 81 DITNRQSFDNTD-KWIDDVRDERGNDVIIVLVGNKTDLSD------------KRQVSTEEGEKKAKELN-AMFIETSAKA 146 (161)
T ss_pred ECcCHHHHHHHH-HHHHHHHHhCCCCCEEEEEEEChhccc------------cCccCHHHHHHHHHHhC-CEEEEEeCCC
Confidence 999999999885 6777665433 3699999999999864 24456667777777776 6899999999
Q ss_pred cCCHHHHHHHHHHH
Q psy4710 164 KEGVREVFETATRA 177 (192)
Q Consensus 164 ~~gi~~~~~~i~~~ 177 (192)
+.|++++++++.+.
T Consensus 147 ~~~v~~l~~~i~~~ 160 (161)
T cd01861 147 GHNVKELFRKIASA 160 (161)
T ss_pred CCCHHHHHHHHHHh
Confidence 99999999999875
No 83
>PLN03108 Rab family protein; Provisional
Probab=100.00 E-value=2.3e-31 Score=186.41 Aligned_cols=164 Identities=29% Similarity=0.568 Sum_probs=139.1
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy4710 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 82 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 82 (192)
+.+||+++|++|+|||||++++.+..+...+.++....+ ...+.+.+..+.+.+||++|++.+...+...++.+|++++
T Consensus 5 ~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~vl 84 (210)
T PLN03108 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALL 84 (210)
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEE
Confidence 468999999999999999999999988776666655443 4456677888899999999999998888889999999999
Q ss_pred EEECCChhhhhchhhhhHHHHhhhC-CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEecc
Q psy4710 83 CFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSA 161 (192)
Q Consensus 83 v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 161 (192)
|||++++++++.+. .|+..+.... ++.|+++++||+|+.. .+.+..+++.++++.++ ++++++||
T Consensus 85 v~D~~~~~s~~~l~-~~~~~~~~~~~~~~piiiv~nK~Dl~~------------~~~~~~~~~~~~~~~~~-~~~~e~Sa 150 (210)
T PLN03108 85 VYDITRRETFNHLA-SWLEDARQHANANMTIMLIGNKCDLAH------------RRAVSTEEGEQFAKEHG-LIFMEASA 150 (210)
T ss_pred EEECCcHHHHHHHH-HHHHHHHHhcCCCCcEEEEEECccCcc------------ccCCCHHHHHHHHHHcC-CEEEEEeC
Confidence 99999999999885 6776655443 5799999999999876 34567788888888887 59999999
Q ss_pred CCcCCHHHHHHHHHHHHhhh
Q psy4710 162 KSKEGVREVFETATRAALQV 181 (192)
Q Consensus 162 ~~~~gi~~~~~~i~~~~~~~ 181 (192)
+++.|++++|.++.+.+.+.
T Consensus 151 ~~~~~v~e~f~~l~~~~~~~ 170 (210)
T PLN03108 151 KTAQNVEEAFIKTAAKIYKK 170 (210)
T ss_pred CCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999988764
No 84
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=100.00 E-value=5.4e-31 Score=177.62 Aligned_cols=157 Identities=34% Similarity=0.640 Sum_probs=131.6
Q ss_pred eeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEEE
Q psy4710 6 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF 84 (192)
Q Consensus 6 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 84 (192)
+||+++|++|+|||||++++.+..+.....++.+..+ ...+.+....+.+.+||+||++.+...+...++.+|++++|+
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence 5899999999999999999999888765566555443 344566777889999999999999888888999999999999
Q ss_pred ECCChhhhhchhhhhHHHHhhhC--CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccC
Q psy4710 85 SIDSPDSLENIPEKWTPEVKHFC--PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAK 162 (192)
Q Consensus 85 d~~~~~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 162 (192)
|++++.+++.+. .|...+..+. ++.|+++++||+|+.. .....++..+++...+ ++++++||+
T Consensus 81 d~~~~~s~~~~~-~~~~~i~~~~~~~~~~~~iv~nK~D~~~-------------~~~~~~~~~~~~~~~~-~~~~~~Sa~ 145 (161)
T cd01863 81 DVTRRDTFTNLE-TWLNELETYSTNNDIVKMLVGNKIDKEN-------------REVTREEGLKFARKHN-MLFIETSAK 145 (161)
T ss_pred ECCCHHHHHhHH-HHHHHHHHhCCCCCCcEEEEEECCcccc-------------cccCHHHHHHHHHHcC-CEEEEEecC
Confidence 999999999885 5888777654 5799999999999974 2344566777777776 699999999
Q ss_pred CcCCHHHHHHHHHHH
Q psy4710 163 SKEGVREVFETATRA 177 (192)
Q Consensus 163 ~~~gi~~~~~~i~~~ 177 (192)
+|.|++++++.+.+.
T Consensus 146 ~~~gi~~~~~~~~~~ 160 (161)
T cd01863 146 TRDGVQQAFEELVEK 160 (161)
T ss_pred CCCCHHHHHHHHHHh
Confidence 999999999998875
No 85
>KOG0088|consensus
Probab=100.00 E-value=1.3e-32 Score=175.49 Aligned_cols=166 Identities=30% Similarity=0.608 Sum_probs=148.4
Q ss_pred ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEE
Q psy4710 3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 81 (192)
Q Consensus 3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i 81 (192)
...+||+++|..-+|||||+-+++.++|......+....+ .+.+.+.+....+.+|||+|+++|..+.+.+++.+++++
T Consensus 11 s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGal 90 (218)
T KOG0088|consen 11 SFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGAL 90 (218)
T ss_pred ceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCceE
Confidence 4689999999999999999999999999887665554444 667778888999999999999999999999999999999
Q ss_pred EEEECCChhhhhchhhhhHHHHhhhC-CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEec
Q psy4710 82 MCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECS 160 (192)
Q Consensus 82 ~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 160 (192)
+|||++|+++|+..+ .|...++... ..+-++||+||+|+.+ .+.++.+++..+++.-+. .|+++|
T Consensus 91 LVyDITDrdSFqKVK-nWV~Elr~mlGnei~l~IVGNKiDLEe------------eR~Vt~qeAe~YAesvGA-~y~eTS 156 (218)
T KOG0088|consen 91 LVYDITDRDSFQKVK-NWVLELRTMLGNEIELLIVGNKIDLEE------------ERQVTRQEAEAYAESVGA-LYMETS 156 (218)
T ss_pred EEEeccchHHHHHHH-HHHHHHHHHhCCeeEEEEecCcccHHH------------hhhhhHHHHHHHHHhhch-hheecc
Confidence 999999999999995 8988887754 4678899999999987 588999999999999885 899999
Q ss_pred cCCcCCHHHHHHHHHHHHhhhc
Q psy4710 161 AKSKEGVREVFETATRAALQVK 182 (192)
Q Consensus 161 a~~~~gi~~~~~~i~~~~~~~~ 182 (192)
|+++.||.++|+.+...+.+..
T Consensus 157 Ak~N~Gi~elFe~Lt~~MiE~~ 178 (218)
T KOG0088|consen 157 AKDNVGISELFESLTAKMIEHS 178 (218)
T ss_pred cccccCHHHHHHHHHHHHHHHh
Confidence 9999999999999999998874
No 86
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=100.00 E-value=3e-31 Score=180.04 Aligned_cols=164 Identities=21% Similarity=0.264 Sum_probs=132.3
Q ss_pred ccceeEEEEcCCCCchhHHHHHHhhCCCC-CcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEE
Q psy4710 3 AIRKKLVIVGDGACGKTCLLIVFSKDQFP-EVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVI 80 (192)
Q Consensus 3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~ 80 (192)
+.-+||+++|.+|+|||||++++.++.+. ..+.++....+ ...+.+++....+.+||++|++.+...+..+++.+|++
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~ 81 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA 81 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence 34689999999999999999999999988 77777776554 34566777788999999999999988888889999999
Q ss_pred EEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEec
Q psy4710 81 LMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECS 160 (192)
Q Consensus 81 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 160 (192)
++|+|++++.+++.+. .|...+.. ..+.|+++|+||+|+.+. +.....+..++++.++..+++++|
T Consensus 82 llv~d~~~~~s~~~~~-~~~~~~~~-~~~~p~iiv~NK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~~~S 147 (169)
T cd01892 82 CLVYDSSDPKSFSYCA-EVYKKYFM-LGEIPCLFVAAKADLDEQ------------QQRYEVQPDEFCRKLGLPPPLHFS 147 (169)
T ss_pred EEEEeCCCHHHHHHHH-HHHHHhcc-CCCCeEEEEEEccccccc------------ccccccCHHHHHHHcCCCCCEEEE
Confidence 9999999999988774 56655432 237999999999998652 112223445667777643568999
Q ss_pred cCCcCCHHHHHHHHHHHHhh
Q psy4710 161 AKSKEGVREVFETATRAALQ 180 (192)
Q Consensus 161 a~~~~gi~~~~~~i~~~~~~ 180 (192)
|++++|++++|+.+.+.+..
T Consensus 148 a~~~~~v~~lf~~l~~~~~~ 167 (169)
T cd01892 148 SKLGDSSNELFTKLATAAQY 167 (169)
T ss_pred eccCccHHHHHHHHHHHhhC
Confidence 99999999999999998764
No 87
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=100.00 E-value=2.4e-31 Score=180.20 Aligned_cols=164 Identities=31% Similarity=0.510 Sum_probs=127.2
Q ss_pred eeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEEEE
Q psy4710 6 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFS 85 (192)
Q Consensus 6 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 85 (192)
+||+++|++|+|||||++++.++.++..+. +..........+....+.+.+|||||++.+...+...++.+|++++|||
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 79 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVP-RVLPEITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYS 79 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCC-CcccceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEE
Confidence 489999999999999999999998876533 3333333444556678899999999998887777777899999999999
Q ss_pred CCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCC-ceEEEeccCCc
Q psy4710 86 IDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINA-FAYLECSAKSK 164 (192)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~ 164 (192)
++++.+++.+...|...++...++.|+++|+||+|+.+..... ...++...+...+.. .+++++||+++
T Consensus 80 ~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~~~~----------~~~~~~~~~~~~~~~~~~~~e~Sa~~~ 149 (166)
T cd01893 80 VDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSSQA----------GLEEEMLPIMNEFREIETCVECSAKTL 149 (166)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccccchh----------HHHHHHHHHHHHHhcccEEEEeccccc
Confidence 9999999998768988888766789999999999997632210 012223333333332 37999999999
Q ss_pred CCHHHHHHHHHHHHhh
Q psy4710 165 EGVREVFETATRAALQ 180 (192)
Q Consensus 165 ~gi~~~~~~i~~~~~~ 180 (192)
.|++++|+.+.+.+..
T Consensus 150 ~~v~~lf~~~~~~~~~ 165 (166)
T cd01893 150 INVSEVFYYAQKAVLH 165 (166)
T ss_pred cCHHHHHHHHHHHhcC
Confidence 9999999999887754
No 88
>KOG0095|consensus
Probab=100.00 E-value=3e-32 Score=172.32 Aligned_cols=164 Identities=29% Similarity=0.574 Sum_probs=145.3
Q ss_pred ceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEE
Q psy4710 5 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMC 83 (192)
Q Consensus 5 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v 83 (192)
-+||+++|..|+|||.|+.++..+-|+.....+++-.+ .+.+.++++.+++++|||+|+++|++....+++.++++|++
T Consensus 7 lfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahalilv 86 (213)
T KOG0095|consen 7 LFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALILV 86 (213)
T ss_pred eEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEEEE
Confidence 57999999999999999999999999988777777555 67888999999999999999999999999999999999999
Q ss_pred EECCChhhhhchhhhhHHHHhhhCCC-CcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccC
Q psy4710 84 FSIDSPDSLENIPEKWTPEVKHFCPN-VPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAK 162 (192)
Q Consensus 84 ~d~~~~~~~~~~~~~~~~~~~~~~~~-~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 162 (192)
||++...+|+-+. .|+..+..+..+ +--|+|+||+|+.+ .+.+..+.+++|.+... ..|+++||+
T Consensus 87 ydiscqpsfdclp-ewlreie~yan~kvlkilvgnk~d~~d------------rrevp~qigeefs~~qd-myfletsak 152 (213)
T KOG0095|consen 87 YDISCQPSFDCLP-EWLREIEQYANNKVLKILVGNKIDLAD------------RREVPQQIGEEFSEAQD-MYFLETSAK 152 (213)
T ss_pred EecccCcchhhhH-HHHHHHHHHhhcceEEEeeccccchhh------------hhhhhHHHHHHHHHhhh-hhhhhhccc
Confidence 9999999999995 799999887754 45589999999987 46788888999998855 578899999
Q ss_pred CcCCHHHHHHHHHHHHhhhc
Q psy4710 163 SKEGVREVFETATRAALQVK 182 (192)
Q Consensus 163 ~~~gi~~~~~~i~~~~~~~~ 182 (192)
+.+|++.+|..+.-.+....
T Consensus 153 ea~nve~lf~~~a~rli~~a 172 (213)
T KOG0095|consen 153 EADNVEKLFLDLACRLISEA 172 (213)
T ss_pred chhhHHHHHHHHHHHHHHHH
Confidence 99999999999877766543
No 89
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=100.00 E-value=4e-31 Score=178.80 Aligned_cols=159 Identities=31% Similarity=0.542 Sum_probs=129.4
Q ss_pred eeEEEEcCCCCchhHHHHHHhhC--CCCCcccCceeeee-eEEEEEC-CeEEEEEEEeCCCCCcccccccccCCCCCEEE
Q psy4710 6 KKLVIVGDGACGKTCLLIVFSKD--QFPEVYVPTVFENY-VADIEVD-SKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 81 (192)
Q Consensus 6 ~~i~v~G~~~~GKSsli~~l~~~--~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i 81 (192)
+||+++|++|||||||++++... .++..+.++.+... ...+..+ +..+.+.+||+||++.+...+...++.+|+++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 58999999999999999999865 56666666665333 3334443 56789999999999988888888999999999
Q ss_pred EEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEecc
Q psy4710 82 MCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSA 161 (192)
Q Consensus 82 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 161 (192)
+|+|+++++++..+ ..|+..+....++.|+++|+||+|+.+. ..+.......+...++ .+++++||
T Consensus 81 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa 146 (164)
T cd04101 81 LVYDVSNKASFENC-SRWVNKVRTASKHMPGVLVGNKMDLADK------------AEVTDAQAQAFAQANQ-LKFFKTSA 146 (164)
T ss_pred EEEECcCHHHHHHH-HHHHHHHHHhCCCCCEEEEEECcccccc------------cCCCHHHHHHHHHHcC-CeEEEEeC
Confidence 99999999999887 4788887776567999999999998652 3345555556666666 58999999
Q ss_pred CCcCCHHHHHHHHHHHH
Q psy4710 162 KSKEGVREVFETATRAA 178 (192)
Q Consensus 162 ~~~~gi~~~~~~i~~~~ 178 (192)
+++.|++++|+.+.+.+
T Consensus 147 ~~~~gi~~l~~~l~~~~ 163 (164)
T cd04101 147 LRGVGYEEPFESLARAF 163 (164)
T ss_pred CCCCChHHHHHHHHHHh
Confidence 99999999999998865
No 90
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=100.00 E-value=5.7e-31 Score=177.91 Aligned_cols=160 Identities=34% Similarity=0.560 Sum_probs=133.7
Q ss_pred eeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEEEE
Q psy4710 6 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFS 85 (192)
Q Consensus 6 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 85 (192)
+||+++|++|+|||||++++....+...+.++....+......++..+.+.+||+||+..+...+...++.++++++|+|
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 80 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFS 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEE
Confidence 58999999999999999999999888777777666666666778888999999999999999999999999999999999
Q ss_pred CCChhhhhchhhhhHHHHhhh--CCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccCC
Q psy4710 86 IDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKS 163 (192)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 163 (192)
++++.++..... |...+... ..+.|+++|+||+|+... ..........+.+.++ .+++++||++
T Consensus 81 ~~~~~s~~~~~~-~~~~~~~~~~~~~~piiiv~NK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~~ 146 (164)
T cd04139 81 ITDMESFTATAE-FREQILRVKDDDNVPLLLVGNKCDLEDK------------RQVSSEEAANLARQWG-VPYVETSAKT 146 (164)
T ss_pred CCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEEccccccc------------cccCHHHHHHHHHHhC-CeEEEeeCCC
Confidence 999999988864 54444443 247999999999998652 2334455566777776 5999999999
Q ss_pred cCCHHHHHHHHHHHHh
Q psy4710 164 KEGVREVFETATRAAL 179 (192)
Q Consensus 164 ~~gi~~~~~~i~~~~~ 179 (192)
+.|++++|+++.+.+.
T Consensus 147 ~~gi~~l~~~l~~~~~ 162 (164)
T cd04139 147 RQNVEKAFYDLVREIR 162 (164)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999988765
No 91
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=100.00 E-value=4.4e-31 Score=181.20 Aligned_cols=174 Identities=30% Similarity=0.513 Sum_probs=141.0
Q ss_pred eeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEEEE
Q psy4710 6 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFS 85 (192)
Q Consensus 6 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 85 (192)
.||+++|++|+|||||++++.+..+...+.++...............+.+.+||+||++++...+..++..+++++++||
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 81 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVYS 81 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhEEEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEEE
Confidence 68999999999999999999998887766666655555666777778889999999999998888889999999999999
Q ss_pred CCChhhhhchhhhhHHHHhhhC-CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccCCc
Q psy4710 86 IDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSK 164 (192)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 164 (192)
+++..+++.+...|...+.... .+.|+++++||+|+... +.....+...+++.++ .+++++||+++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~~~ 148 (180)
T cd04137 82 VTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQ------------RQVSTEEGKELAESWG-AAFLESSAREN 148 (180)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhc------------CccCHHHHHHHHHHcC-CeEEEEeCCCC
Confidence 9999999988655555544332 47899999999998652 3344555666777666 58999999999
Q ss_pred CCHHHHHHHHHHHHhhhccc----cccccccC
Q psy4710 165 EGVREVFETATRAALQVKKK----KKGRCRLL 192 (192)
Q Consensus 165 ~gi~~~~~~i~~~~~~~~~~----~~~~c~~~ 192 (192)
.|++++|+++.+.+...... .+.+|.+|
T Consensus 149 ~gv~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 180 (180)
T cd04137 149 ENVEEAFELLIEEIEKVENPLDPGQKKKCSIM 180 (180)
T ss_pred CCHHHHHHHHHHHHHHhcCCCCCCCCCCceeC
Confidence 99999999999988876543 23478776
No 92
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.98 E-value=8.5e-31 Score=184.70 Aligned_cols=161 Identities=25% Similarity=0.396 Sum_probs=129.7
Q ss_pred eeEEEEcCCCCchhHHHHHHhhCCCC-CcccCcee-eeeeEEEEECCeEEEEEEEeCCCCCcccccccccCC-CCCEEEE
Q psy4710 6 KKLVIVGDGACGKTCLLIVFSKDQFP-EVYVPTVF-ENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYP-DTDVILM 82 (192)
Q Consensus 6 ~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~-~~~~~i~ 82 (192)
+||+++|++|+|||||++++..+.+. ..+.++.. +.....+.+++....+.+||+||++.+ ....+++ .+|++++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~--~~~~~~~~~ad~iil 78 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEMW--TEDSCMQYQGDAFVV 78 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcchH--HHhHHhhcCCCEEEE
Confidence 58999999999999999999888876 55555554 444566777888899999999998722 2334556 8999999
Q ss_pred EEECCChhhhhchhhhhHHHHhhhC--CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEec
Q psy4710 83 CFSIDSPDSLENIPEKWTPEVKHFC--PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECS 160 (192)
Q Consensus 83 v~d~~~~~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 160 (192)
|||++++.+++.+. .|+..+.... .+.|+++|+||+|+.. .+.+..+++..++..++ .+++++|
T Consensus 79 V~d~td~~S~~~~~-~~~~~l~~~~~~~~~piilV~NK~Dl~~------------~~~v~~~~~~~~a~~~~-~~~~e~S 144 (221)
T cd04148 79 VYSVTDRSSFERAS-ELRIQLRRNRQLEDRPIILVGNKSDLAR------------SREVSVQEGRACAVVFD-CKFIETS 144 (221)
T ss_pred EEECCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEEChhccc------------cceecHHHHHHHHHHcC-CeEEEec
Confidence 99999999999885 6777666543 5799999999999865 24456667777887777 4899999
Q ss_pred cCCcCCHHHHHHHHHHHHhhhc
Q psy4710 161 AKSKEGVREVFETATRAALQVK 182 (192)
Q Consensus 161 a~~~~gi~~~~~~i~~~~~~~~ 182 (192)
|+++.|++++|+++.+.+...+
T Consensus 145 A~~~~gv~~l~~~l~~~~~~~~ 166 (221)
T cd04148 145 AGLQHNVDELLEGIVRQIRLRR 166 (221)
T ss_pred CCCCCCHHHHHHHHHHHHHhhh
Confidence 9999999999999999887543
No 93
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.98 E-value=1.5e-30 Score=175.55 Aligned_cols=159 Identities=32% Similarity=0.623 Sum_probs=130.3
Q ss_pred eeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEEE
Q psy4710 6 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF 84 (192)
Q Consensus 6 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 84 (192)
+||+++|++|+|||||++++.+..+.....++..... ...+...+....+.+||+||++.+...+..+++++|++++|+
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence 5899999999999999999999888765554543333 444556677788999999999999988988899999999999
Q ss_pred ECCChhhhhchhhhhHHHHhhhCC-CCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccCC
Q psy4710 85 SIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKS 163 (192)
Q Consensus 85 d~~~~~~~~~~~~~~~~~~~~~~~-~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 163 (192)
|++++++++.+. .|...+..... +.|+++++||+|+... +.....+..++.+.++ .+++++|+++
T Consensus 81 d~~~~~s~~~~~-~~~~~i~~~~~~~~piiiv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~s~~~ 146 (162)
T cd04123 81 DITDADSFQKVK-KWIKELKQMRGNNISLVIVGNKIDLERQ------------RVVSKSEAEEYAKSVG-AKHFETSAKT 146 (162)
T ss_pred ECCCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEECcccccc------------cCCCHHHHHHHHHHcC-CEEEEEeCCC
Confidence 999999998884 67777666543 7899999999998752 3445566666777776 5899999999
Q ss_pred cCCHHHHHHHHHHHH
Q psy4710 164 KEGVREVFETATRAA 178 (192)
Q Consensus 164 ~~gi~~~~~~i~~~~ 178 (192)
++|++++++++.+.+
T Consensus 147 ~~gi~~~~~~l~~~~ 161 (162)
T cd04123 147 GKGIEELFLSLAKRM 161 (162)
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999998765
No 94
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.97 E-value=3.5e-31 Score=179.53 Aligned_cols=156 Identities=21% Similarity=0.293 Sum_probs=118.5
Q ss_pred ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy4710 3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 82 (192)
Q Consensus 3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 82 (192)
...+||+++|++|+|||||++++..+.+.. +.++.+.... .. ....+.+.+||+||++.+...+..+++.+|++|+
T Consensus 7 ~~~~kv~i~G~~~~GKTsli~~l~~~~~~~-~~~t~g~~~~-~~--~~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~ 82 (168)
T cd04149 7 NKEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNVE-TV--TYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF 82 (168)
T ss_pred CCccEEEEECcCCCCHHHHHHHHccCCCcc-ccCCcccceE-EE--EECCEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence 467899999999999999999998877653 3444443322 22 2356889999999999999999999999999999
Q ss_pred EEECCChhhhhchhhhhHHHHhh-hCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHH---c-CCceEE
Q psy4710 83 CFSIDSPDSLENIPEKWTPEVKH-FCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQK---I-NAFAYL 157 (192)
Q Consensus 83 v~d~~~~~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~ 157 (192)
|||++++.++....+.|...+.. ..++.|+++|+||+|+... ...++..++.+. . ..++++
T Consensus 83 v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--------------~~~~~i~~~~~~~~~~~~~~~~~ 148 (168)
T cd04149 83 VVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDA--------------MKPHEIQEKLGLTRIRDRNWYVQ 148 (168)
T ss_pred EEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccC--------------CCHHHHHHHcCCCccCCCcEEEE
Confidence 99999998898886555555543 2457999999999998542 223333333211 1 124789
Q ss_pred EeccCCcCCHHHHHHHHHH
Q psy4710 158 ECSAKSKEGVREVFETATR 176 (192)
Q Consensus 158 ~~Sa~~~~gi~~~~~~i~~ 176 (192)
++||++|.|++++|++|.+
T Consensus 149 ~~SAk~g~gv~~~~~~l~~ 167 (168)
T cd04149 149 PSCATSGDGLYEGLTWLSS 167 (168)
T ss_pred EeeCCCCCChHHHHHHHhc
Confidence 9999999999999999864
No 95
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.97 E-value=4.7e-31 Score=180.81 Aligned_cols=161 Identities=19% Similarity=0.263 Sum_probs=120.1
Q ss_pred ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy4710 3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 82 (192)
Q Consensus 3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 82 (192)
..++||+++|+++||||||++++..+.+.. +.|+.+.... . ++...+.+.+||+||++.+...|..+++++|++|+
T Consensus 15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~~-~~pt~g~~~~-~--~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~ 90 (181)
T PLN00223 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE-T--VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCcc-ccCCcceeEE-E--EEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence 357899999999999999999998877653 3455443322 2 33456889999999999999999999999999999
Q ss_pred EEECCChhhhhchhhhhHHHHhh-hCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHc----CCceEE
Q psy4710 83 CFSIDSPDSLENIPEKWTPEVKH-FCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKI----NAFAYL 157 (192)
Q Consensus 83 v~d~~~~~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 157 (192)
|+|+++++++....+.+...+.. ..++.|++|++||+|+.... ..++..+...-. ..+.++
T Consensus 91 V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~--------------~~~~~~~~l~l~~~~~~~~~~~ 156 (181)
T PLN00223 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--------------NAAEITDKLGLHSLRQRHWYIQ 156 (181)
T ss_pred EEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCC--------------CHHHHHHHhCccccCCCceEEE
Confidence 99999999988876544444433 33579999999999986532 122222211100 113566
Q ss_pred EeccCCcCCHHHHHHHHHHHHhhh
Q psy4710 158 ECSAKSKEGVREVFETATRAALQV 181 (192)
Q Consensus 158 ~~Sa~~~~gi~~~~~~i~~~~~~~ 181 (192)
++||++|+|++++|++|.+.+.++
T Consensus 157 ~~Sa~~g~gv~e~~~~l~~~~~~~ 180 (181)
T PLN00223 157 STCATSGEGLYEGLDWLSNNIANK 180 (181)
T ss_pred eccCCCCCCHHHHHHHHHHHHhhc
Confidence 899999999999999999887654
No 96
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.97 E-value=6.5e-31 Score=179.40 Aligned_cols=159 Identities=19% Similarity=0.259 Sum_probs=118.6
Q ss_pred ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy4710 3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 82 (192)
Q Consensus 3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 82 (192)
..++||+++|++|+|||||++++..+.+.. +.|+.+.... ... ...+.+.+||+||++.+...|..+++++|++|+
T Consensus 11 ~~~~ki~l~G~~~~GKTsL~~~~~~~~~~~-~~~t~~~~~~-~~~--~~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~ 86 (175)
T smart00177 11 NKEMRILMVGLDAAGKTTILYKLKLGESVT-TIPTIGFNVE-TVT--YKNISFTVWDVGGQDKIRPLWRHYYTNTQGLIF 86 (175)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCCCC-cCCccccceE-EEE--ECCEEEEEEECCCChhhHHHHHHHhCCCCEEEE
Confidence 357999999999999999999998777643 4455443322 222 346789999999999999999999999999999
Q ss_pred EEECCChhhhhchhhhhHHHHhh-hCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHH----cCCceEE
Q psy4710 83 CFSIDSPDSLENIPEKWTPEVKH-FCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQK----INAFAYL 157 (192)
Q Consensus 83 v~d~~~~~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 157 (192)
|+|++++++++...+.|...+.. ..++.|++||+||.|+..... ..+..+.... ...+.++
T Consensus 87 v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~--------------~~~i~~~~~~~~~~~~~~~~~ 152 (175)
T smart00177 87 VVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMK--------------AAEITEKLGLHSIRDRNWYIQ 152 (175)
T ss_pred EEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCCC--------------HHHHHHHhCccccCCCcEEEE
Confidence 99999999998887655555543 235799999999999865321 1111111100 0124577
Q ss_pred EeccCCcCCHHHHHHHHHHHHh
Q psy4710 158 ECSAKSKEGVREVFETATRAAL 179 (192)
Q Consensus 158 ~~Sa~~~~gi~~~~~~i~~~~~ 179 (192)
++||++|+|++++|++|...+.
T Consensus 153 ~~Sa~~g~gv~e~~~~l~~~~~ 174 (175)
T smart00177 153 PTCATSGDGLYEGLTWLSNNLK 174 (175)
T ss_pred EeeCCCCCCHHHHHHHHHHHhc
Confidence 8999999999999999987753
No 97
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.97 E-value=7.5e-30 Score=173.35 Aligned_cols=161 Identities=28% Similarity=0.552 Sum_probs=131.7
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceee-eeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy4710 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFE-NYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 82 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 82 (192)
..+||+++|++|+|||||++++..+.+...+.++.+. .....+.+.+..+.+.+||+||+..+...+..+++.+|++++
T Consensus 6 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 85 (169)
T cd04114 6 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALIL 85 (169)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEE
Confidence 3689999999999999999999988776665555443 334456677888899999999999998888889999999999
Q ss_pred EEECCChhhhhchhhhhHHHHhhhC-CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEecc
Q psy4710 83 CFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSA 161 (192)
Q Consensus 83 v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 161 (192)
|+|++++.+++.+. .|+..+.... .+.|+++++||+|+... +.+.......+.+... .+++++||
T Consensus 86 v~d~~~~~s~~~~~-~~~~~l~~~~~~~~~~i~v~NK~D~~~~------------~~i~~~~~~~~~~~~~-~~~~~~Sa 151 (169)
T cd04114 86 TYDITCEESFRCLP-EWLREIEQYANNKVITILVGNKIDLAER------------REVSQQRAEEFSDAQD-MYYLETSA 151 (169)
T ss_pred EEECcCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEECcccccc------------cccCHHHHHHHHHHcC-CeEEEeeC
Confidence 99999999988874 6877776654 36899999999998652 3344555666766666 58999999
Q ss_pred CCcCCHHHHHHHHHHHH
Q psy4710 162 KSKEGVREVFETATRAA 178 (192)
Q Consensus 162 ~~~~gi~~~~~~i~~~~ 178 (192)
++|.|++++|++|.+.+
T Consensus 152 ~~~~gv~~l~~~i~~~~ 168 (169)
T cd04114 152 KESDNVEKLFLDLACRL 168 (169)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 99999999999998764
No 98
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.97 E-value=9e-31 Score=179.61 Aligned_cols=165 Identities=19% Similarity=0.312 Sum_probs=120.3
Q ss_pred ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy4710 3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 82 (192)
Q Consensus 3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 82 (192)
..++||+++|++|+|||||++++..+.+.. +.|+.+.... . ++...+.+.+||+||++.+...+..+++.+|++|+
T Consensus 15 ~~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~-~--~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~ 90 (182)
T PTZ00133 15 KKEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVE-T--VEYKNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIF 90 (182)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceE-E--EEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence 457999999999999999999998877754 3454443322 2 23356889999999999999999999999999999
Q ss_pred EEECCChhhhhchhhhhHHHHhh-hCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEecc
Q psy4710 83 CFSIDSPDSLENIPEKWTPEVKH-FCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSA 161 (192)
Q Consensus 83 v~d~~~~~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 161 (192)
|+|+++++++....+.+...+.. ...+.|++||+||.|+.......+....+... ..+.. .+.++++||
T Consensus 91 v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~l~~~---------~~~~~-~~~~~~~Sa 160 (182)
T PTZ00133 91 VVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMSTTEVTEKLGLH---------SVRQR-NWYIQGCCA 160 (182)
T ss_pred EEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCCHHHHHHHhCCC---------cccCC-cEEEEeeeC
Confidence 99999999988886555555443 23578999999999986522111111110000 01111 246779999
Q ss_pred CCcCCHHHHHHHHHHHHhhh
Q psy4710 162 KSKEGVREVFETATRAALQV 181 (192)
Q Consensus 162 ~~~~gi~~~~~~i~~~~~~~ 181 (192)
++|.|++++|++|.+.+.++
T Consensus 161 ~tg~gv~e~~~~l~~~i~~~ 180 (182)
T PTZ00133 161 TTAQGLYEGLDWLSANIKKS 180 (182)
T ss_pred CCCCCHHHHHHHHHHHHHHh
Confidence 99999999999998877654
No 99
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.97 E-value=3.4e-30 Score=173.40 Aligned_cols=158 Identities=36% Similarity=0.614 Sum_probs=131.4
Q ss_pred eEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEEEEC
Q psy4710 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSI 86 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 86 (192)
||+++|++|||||||++++++..+...+.++............+..+.+.+||+||+..+...+...++.+|++++|+|+
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 80 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSI 80 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEEC
Confidence 79999999999999999999988777777766655555666677788999999999998888888889999999999999
Q ss_pred CChhhhhchhhhhHHHHhhhC--CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccCCc
Q psy4710 87 DSPDSLENIPEKWTPEVKHFC--PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSK 164 (192)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 164 (192)
++++++..+. .|...+.... .+.|+++++||+|+... +....+.+..+...++ .+++++|++++
T Consensus 81 ~~~~s~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~S~~~~ 146 (160)
T cd00876 81 TDRESFEEIK-GYREQILRVKDDEDIPIVLVGNKCDLENE------------RQVSKEEGKALAKEWG-CPFIETSAKDN 146 (160)
T ss_pred CCHHHHHHHH-HHHHHHHHhcCCCCCcEEEEEECCccccc------------ceecHHHHHHHHHHcC-CcEEEeccCCC
Confidence 9999998886 4444444433 48999999999998762 3455677777877777 59999999999
Q ss_pred CCHHHHHHHHHHHH
Q psy4710 165 EGVREVFETATRAA 178 (192)
Q Consensus 165 ~gi~~~~~~i~~~~ 178 (192)
.|+++++++|.+.+
T Consensus 147 ~~i~~l~~~l~~~i 160 (160)
T cd00876 147 INIDEVFKLLVREI 160 (160)
T ss_pred CCHHHHHHHHHhhC
Confidence 99999999998753
No 100
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.97 E-value=4.9e-30 Score=172.16 Aligned_cols=156 Identities=39% Similarity=0.703 Sum_probs=131.7
Q ss_pred eeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEEE
Q psy4710 6 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF 84 (192)
Q Consensus 6 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 84 (192)
+||+++|++|+|||||++++.+..+...+.++..... ...+..+.....+.+||+||+..+...+...++++|++++|+
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~ 80 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY 80 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence 5899999999999999999999998887655555433 455666777899999999999998888899999999999999
Q ss_pred ECCChhhhhchhhhhHHHHhhhC-CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccCC
Q psy4710 85 SIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKS 163 (192)
Q Consensus 85 d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 163 (192)
|++++++++.+. .|+..+.... .+.|+++++||+|+.. ......++...+....+ .+++++||++
T Consensus 81 d~~~~~~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~-~~~~~~sa~~ 146 (159)
T cd00154 81 DITNRESFENLD-KWLKELKEYAPENIPIILVGNKIDLED------------QRQVSTEEAQQFAKENG-LLFFETSAKT 146 (159)
T ss_pred ECCCHHHHHHHH-HHHHHHHHhCCCCCcEEEEEEcccccc------------cccccHHHHHHHHHHcC-CeEEEEecCC
Confidence 999998998885 5887777665 5799999999999963 23455677777777765 6999999999
Q ss_pred cCCHHHHHHHHH
Q psy4710 164 KEGVREVFETAT 175 (192)
Q Consensus 164 ~~gi~~~~~~i~ 175 (192)
+.|+++++++|.
T Consensus 147 ~~~i~~~~~~i~ 158 (159)
T cd00154 147 GENVEELFQSLA 158 (159)
T ss_pred CCCHHHHHHHHh
Confidence 999999999985
No 101
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.97 E-value=1.3e-30 Score=175.24 Aligned_cols=154 Identities=18% Similarity=0.316 Sum_probs=114.0
Q ss_pred eeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEEEE
Q psy4710 6 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFS 85 (192)
Q Consensus 6 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 85 (192)
+||+++|.+++|||||++++..+.+.. +.|+.+... ..+ ....+.+.+||+||++.+...+..+++++|++++|+|
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~~-~~pt~g~~~-~~~--~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D 76 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV-ETV--EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 76 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCcc-cCCCCCcce-EEE--EECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEe
Confidence 589999999999999999998877763 455544332 222 2346889999999999999999999999999999999
Q ss_pred CCChhhhhchhhhhHHHHhh-hCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHH---HcCCceEEEecc
Q psy4710 86 IDSPDSLENIPEKWTPEVKH-FCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQ---KINAFAYLECSA 161 (192)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~Sa 161 (192)
++++.++....+.|...+.. ...+.|++|++||+|+...... .+....+.. ....+.++++||
T Consensus 77 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~-------------~~i~~~~~~~~~~~~~~~~~~~Sa 143 (159)
T cd04150 77 SNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMSA-------------AEVTDKLGLHSLRNRNWYIQATCA 143 (159)
T ss_pred CCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCCH-------------HHHHHHhCccccCCCCEEEEEeeC
Confidence 99999998886555555443 2346899999999998642111 011111110 011246789999
Q ss_pred CCcCCHHHHHHHHHH
Q psy4710 162 KSKEGVREVFETATR 176 (192)
Q Consensus 162 ~~~~gi~~~~~~i~~ 176 (192)
++|+|++++|++|.+
T Consensus 144 k~g~gv~~~~~~l~~ 158 (159)
T cd04150 144 TSGDGLYEGLDWLSN 158 (159)
T ss_pred CCCCCHHHHHHHHhc
Confidence 999999999999863
No 102
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.97 E-value=3.8e-30 Score=174.74 Aligned_cols=158 Identities=20% Similarity=0.344 Sum_probs=119.6
Q ss_pred eEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEEEEC
Q psy4710 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSI 86 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 86 (192)
||+++|+++||||||++++.+..+.. +.++.+.... . ++...+.+.+||+||+..+...+..+++.+|++++|+|+
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~~-~--~~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~ 76 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNVE-T--VEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDS 76 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeEE-E--EEECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeC
Confidence 68999999999999999999986654 4444433322 2 333567899999999999988898899999999999999
Q ss_pred CChhhhhchhhhhHHHHhh-hCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcC-----CceEEEec
Q psy4710 87 DSPDSLENIPEKWTPEVKH-FCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKIN-----AFAYLECS 160 (192)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~S 160 (192)
++++++......+...+.. ...+.|++|++||+|+... ...++...+....+ .+.++++|
T Consensus 77 s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~S 142 (169)
T cd04158 77 SHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGA--------------LSVEEMTELLSLHKLCCGRSWYIQGCD 142 (169)
T ss_pred CcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccC--------------CCHHHHHHHhCCccccCCCcEEEEeCc
Confidence 9999998886444444433 2346899999999998542 23344444432211 24688999
Q ss_pred cCCcCCHHHHHHHHHHHHhhhc
Q psy4710 161 AKSKEGVREVFETATRAALQVK 182 (192)
Q Consensus 161 a~~~~gi~~~~~~i~~~~~~~~ 182 (192)
|++|.|++++|++|.+.+.+..
T Consensus 143 a~~g~gv~~~f~~l~~~~~~~~ 164 (169)
T cd04158 143 ARSGMGLYEGLDWLSRQLVAAG 164 (169)
T ss_pred CCCCCCHHHHHHHHHHHHhhcc
Confidence 9999999999999998877654
No 103
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.97 E-value=1.4e-29 Score=176.14 Aligned_cols=161 Identities=31% Similarity=0.486 Sum_probs=128.0
Q ss_pred eEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEEEEC
Q psy4710 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSI 86 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 86 (192)
||+++|++|+|||||++++++..+...+.++........+.+.+..+.+.+||+||+..+...+...++.+|++++|+|+
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~ 80 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAV 80 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchhhheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEEC
Confidence 79999999999999999999998877666666544455566777778999999999999988888889999999999999
Q ss_pred CChhhhhchhhhhHHHHhhhC--CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHH-HcCCceEEEeccCC
Q psy4710 87 DSPDSLENIPEKWTPEVKHFC--PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQ-KINAFAYLECSAKS 163 (192)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~ 163 (192)
+++.+++.+. .|...+.... .+.|+++|+||+|+... .+.+......+... .++ .+++++||++
T Consensus 81 ~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~NK~Dl~~~-----------~~~v~~~~~~~~~~~~~~-~~~~~~Sa~~ 147 (198)
T cd04147 81 DDPESFEEVE-RLREEILEVKEDKFVPIVVVGNKADSLEE-----------ERQVPAKDALSTVELDWN-CGFVETSAKD 147 (198)
T ss_pred CCHHHHHHHH-HHHHHHHHhcCCCCCcEEEEEEccccccc-----------cccccHHHHHHHHHhhcC-CcEEEecCCC
Confidence 9999999884 6666555433 37999999999998652 12233333333332 333 5899999999
Q ss_pred cCCHHHHHHHHHHHHhh
Q psy4710 164 KEGVREVFETATRAALQ 180 (192)
Q Consensus 164 ~~gi~~~~~~i~~~~~~ 180 (192)
|.|++++|+++.+.+..
T Consensus 148 g~gv~~l~~~l~~~~~~ 164 (198)
T cd04147 148 NENVLEVFKELLRQANL 164 (198)
T ss_pred CCCHHHHHHHHHHHhhc
Confidence 99999999999988764
No 104
>KOG0395|consensus
Probab=99.97 E-value=7.1e-30 Score=175.51 Aligned_cols=165 Identities=36% Similarity=0.523 Sum_probs=149.5
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEE
Q psy4710 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMC 83 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v 83 (192)
.++||+++|.+|+|||+|+.+++...|...+.|+..+.+.+.+.++++...+.++||+|++.|......+++.++++++|
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lV 81 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLV 81 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCccccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEE
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EECCChhhhhchhhhhHHHHhhhC-CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccC
Q psy4710 84 FSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAK 162 (192)
Q Consensus 84 ~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 162 (192)
|+++++.||+.+...+....+... ...|+++|+||+|+.. .+.+..+++..++..+++ +|+++||+
T Consensus 82 ysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~------------~R~V~~eeg~~la~~~~~-~f~E~Sak 148 (196)
T KOG0395|consen 82 YSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLER------------ERQVSEEEGKALARSWGC-AFIETSAK 148 (196)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchh------------ccccCHHHHHHHHHhcCC-cEEEeecc
Confidence 999999999999754444433222 4679999999999987 478999999999999996 79999999
Q ss_pred CcCCHHHHHHHHHHHHhhh
Q psy4710 163 SKEGVREVFETATRAALQV 181 (192)
Q Consensus 163 ~~~gi~~~~~~i~~~~~~~ 181 (192)
.+.+++++|..+.+.+...
T Consensus 149 ~~~~v~~~F~~L~r~~~~~ 167 (196)
T KOG0395|consen 149 LNYNVDEVFYELVREIRLP 167 (196)
T ss_pred CCcCHHHHHHHHHHHHHhh
Confidence 9999999999999988873
No 105
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.97 E-value=2e-29 Score=173.19 Aligned_cols=164 Identities=24% Similarity=0.336 Sum_probs=121.4
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEE-CCeEEEEEEEeCCCCCcccccccccCCCCCEEE
Q psy4710 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEV-DSKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 81 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i 81 (192)
..+||+++|++|||||||++++....+... .++.+... ...+.. +...+.+.+|||||++.+...|..+++++|+++
T Consensus 2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii 80 (183)
T cd04152 2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIV 80 (183)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEE
Confidence 368999999999999999999998877654 44433222 222222 346789999999999999889999999999999
Q ss_pred EEEECCChhhhhchhhhhHHHHhhhC--CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHH--Hc---CCc
Q psy4710 82 MCFSIDSPDSLENIPEKWTPEVKHFC--PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQ--KI---NAF 154 (192)
Q Consensus 82 ~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---~~~ 154 (192)
+|+|++++++++... .|+..+.... .+.|+++|+||+|+.... ...+...+.. .. ..+
T Consensus 81 ~v~D~~~~~~~~~~~-~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~--------------~~~~~~~~~~~~~~~~~~~~ 145 (183)
T cd04152 81 FVVDSVDVERMEEAK-TELHKITRFSENQGVPVLVLANKQDLPNAL--------------SVSEVEKLLALHELSASTPW 145 (183)
T ss_pred EEEECCCHHHHHHHH-HHHHHHHhhhhcCCCcEEEEEECcCccccC--------------CHHHHHHHhCccccCCCCce
Confidence 999999998887774 4554444322 479999999999986421 1222222221 11 124
Q ss_pred eEEEeccCCcCCHHHHHHHHHHHHhhhcc
Q psy4710 155 AYLECSAKSKEGVREVFETATRAALQVKK 183 (192)
Q Consensus 155 ~~~~~Sa~~~~gi~~~~~~i~~~~~~~~~ 183 (192)
+++++||++++|+++++++|.+.+.+.+.
T Consensus 146 ~~~~~SA~~~~gi~~l~~~l~~~l~~~~~ 174 (183)
T cd04152 146 HVQPACAIIGEGLQEGLEKLYEMILKRRK 174 (183)
T ss_pred EEEEeecccCCCHHHHHHHHHHHHHHHHh
Confidence 68899999999999999999999876653
No 106
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.97 E-value=5e-30 Score=173.26 Aligned_cols=157 Identities=17% Similarity=0.263 Sum_probs=118.6
Q ss_pred eEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEEEEC
Q psy4710 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSI 86 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 86 (192)
.|+++|++|+|||||++++.+..+...+.|+.+... ..++...+.+.+||+||++.+...+..+++++|++++|+|+
T Consensus 1 ~i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~---~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~ 77 (164)
T cd04162 1 QILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS---VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDS 77 (164)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCcccccccCCcce---EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEEC
Confidence 389999999999999999999887776666654332 23455678999999999999999999999999999999999
Q ss_pred CChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccCC---
Q psy4710 87 DSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKS--- 163 (192)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~--- 163 (192)
+++.++.... .|+..+....++.|+++|+||.|+........... ...+..+++..+ ++++++||++
T Consensus 78 t~~~s~~~~~-~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~--------~~~~~~~~~~~~-~~~~~~Sa~~~~s 147 (164)
T cd04162 78 ADSERLPLAR-QELHQLLQHPPDLPLVVLANKQDLPAARSVQEIHK--------ELELEPIARGRR-WILQGTSLDDDGS 147 (164)
T ss_pred CCHHHHHHHH-HHHHHHHhCCCCCcEEEEEeCcCCcCCCCHHHHHH--------HhCChhhcCCCc-eEEEEeeecCCCC
Confidence 9998888775 55555544346899999999999866432111000 011223444444 5788888888
Q ss_pred ---cCCHHHHHHHHHH
Q psy4710 164 ---KEGVREVFETATR 176 (192)
Q Consensus 164 ---~~gi~~~~~~i~~ 176 (192)
++|++++|+.++.
T Consensus 148 ~~~~~~v~~~~~~~~~ 163 (164)
T cd04162 148 PSRMEAVKDLLSQLIN 163 (164)
T ss_pred hhHHHHHHHHHHHHhc
Confidence 9999999998753
No 107
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.97 E-value=4.6e-29 Score=170.10 Aligned_cols=157 Identities=18% Similarity=0.284 Sum_probs=115.5
Q ss_pred cccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEE
Q psy4710 2 AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 81 (192)
Q Consensus 2 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i 81 (192)
...++||+++|++|+|||||++++.+..+. .+.++.+. ....+.++ .+.+.+||+||++.++..+..+++.+|+++
T Consensus 11 ~~~~~kv~ivG~~~~GKTsL~~~l~~~~~~-~~~~t~g~-~~~~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i 86 (173)
T cd04154 11 KEREMRILILGLDNAGKTTILKKLLGEDID-TISPTLGF-QIKTLEYE--GYKLNIWDVGGQKTLRPYWRNYFESTDALI 86 (173)
T ss_pred CCCccEEEEECCCCCCHHHHHHHHccCCCC-CcCCcccc-ceEEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence 356789999999999999999999987543 33344331 22233333 578999999999988888888999999999
Q ss_pred EEEECCChhhhhchhhhhHHHHhh-hCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHH----cCCceE
Q psy4710 82 MCFSIDSPDSLENIPEKWTPEVKH-FCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQK----INAFAY 156 (192)
Q Consensus 82 ~v~d~~~~~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 156 (192)
+|+|++++.++......+...+.. ...+.|+++|+||+|+.+.. ..++...+... ...+++
T Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~--------------~~~~~~~~~~~~~~~~~~~~~ 152 (173)
T cd04154 87 WVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGAL--------------SEEEIREALELDKISSHHWRI 152 (173)
T ss_pred EEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCC--------------CHHHHHHHhCccccCCCceEE
Confidence 999999998888775433333332 23589999999999986521 22223332211 123689
Q ss_pred EEeccCCcCCHHHHHHHHHH
Q psy4710 157 LECSAKSKEGVREVFETATR 176 (192)
Q Consensus 157 ~~~Sa~~~~gi~~~~~~i~~ 176 (192)
+++||++|.|++++|+++..
T Consensus 153 ~~~Sa~~g~gi~~l~~~l~~ 172 (173)
T cd04154 153 QPCSAVTGEGLLQGIDWLVD 172 (173)
T ss_pred EeccCCCCcCHHHHHHHHhc
Confidence 99999999999999999864
No 108
>KOG0081|consensus
Probab=99.96 E-value=9.4e-31 Score=167.18 Aligned_cols=164 Identities=29% Similarity=0.520 Sum_probs=142.7
Q ss_pred ceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEE---------CCeEEEEEEEeCCCCCcccccccccC
Q psy4710 5 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEV---------DSKQVELALWDTAGQEDYDRLRPLSY 74 (192)
Q Consensus 5 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~---------~~~~~~~~l~D~~g~~~~~~~~~~~~ 74 (192)
-+|.+.+|++|+||||++.++..++|......+.+..+ .+.+.+ ....+.+++|||+|+++|++++..++
T Consensus 9 likfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTAFf 88 (219)
T KOG0081|consen 9 LIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTAFF 88 (219)
T ss_pred HHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHHHH
Confidence 46889999999999999999999999887766666554 233333 23457899999999999999999999
Q ss_pred CCCCEEEEEEECCChhhhhchhhhhHHHHhh--hCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcC
Q psy4710 75 PDTDVILMCFSIDSPDSLENIPEKWTPEVKH--FCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKIN 152 (192)
Q Consensus 75 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~--~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (192)
+.+=++++++|+++.++|-+.. .|+..++. ++++-.+++++||+|+.. .+.++..++..++++++
T Consensus 89 RDAMGFlLiFDlT~eqSFLnvr-nWlSQL~~hAYcE~PDivlcGNK~DL~~------------~R~Vs~~qa~~La~kyg 155 (219)
T KOG0081|consen 89 RDAMGFLLIFDLTSEQSFLNVR-NWLSQLQTHAYCENPDIVLCGNKADLED------------QRVVSEDQAAALADKYG 155 (219)
T ss_pred HhhccceEEEeccchHHHHHHH-HHHHHHHHhhccCCCCEEEEcCccchhh------------hhhhhHHHHHHHHHHhC
Confidence 9999999999999999999995 89988875 557888999999999987 68899999999999999
Q ss_pred CceEEEeccCCcCCHHHHHHHHHHHHhhhc
Q psy4710 153 AFAYLECSAKSKEGVREVFETATRAALQVK 182 (192)
Q Consensus 153 ~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~~ 182 (192)
+|||++||-+|.|+++..+.+...++++-
T Consensus 156 -lPYfETSA~tg~Nv~kave~LldlvM~Ri 184 (219)
T KOG0081|consen 156 -LPYFETSACTGTNVEKAVELLLDLVMKRI 184 (219)
T ss_pred -CCeeeeccccCcCHHHHHHHHHHHHHHHH
Confidence 69999999999999999999888888763
No 109
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.96 E-value=6.3e-28 Score=169.86 Aligned_cols=164 Identities=30% Similarity=0.512 Sum_probs=134.2
Q ss_pred ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEE
Q psy4710 3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 81 (192)
Q Consensus 3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i 81 (192)
..++||+++|++|||||||+++++.+.+...+.++.+... ...+..+.+.+.+.+||++|++.+...+..++..+++++
T Consensus 7 ~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~~i 86 (215)
T PTZ00132 7 VPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQCAI 86 (215)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCCEEE
Confidence 4689999999999999999999888888777777666544 334455778899999999999999888888889999999
Q ss_pred EEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEecc
Q psy4710 82 MCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSA 161 (192)
Q Consensus 82 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 161 (192)
+|+|+++..++..+. .|...+....++.|+++++||+|+... ..... ...+.+..+ +.++++||
T Consensus 87 ~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~i~lv~nK~Dl~~~-------------~~~~~-~~~~~~~~~-~~~~e~Sa 150 (215)
T PTZ00132 87 IMFDVTSRITYKNVP-NWHRDIVRVCENIPIVLVGNKVDVKDR-------------QVKAR-QITFHRKKN-LQYYDISA 150 (215)
T ss_pred EEEECcCHHHHHHHH-HHHHHHHHhCCCCCEEEEEECccCccc-------------cCCHH-HHHHHHHcC-CEEEEEeC
Confidence 999999999999885 788887776778999999999998541 12222 234555555 58999999
Q ss_pred CCcCCHHHHHHHHHHHHhhhc
Q psy4710 162 KSKEGVREVFETATRAALQVK 182 (192)
Q Consensus 162 ~~~~gi~~~~~~i~~~~~~~~ 182 (192)
+++.|++++|.+|.+.+....
T Consensus 151 ~~~~~v~~~f~~ia~~l~~~p 171 (215)
T PTZ00132 151 KSNYNFEKPFLWLARRLTNDP 171 (215)
T ss_pred CCCCCHHHHHHHHHHHHhhcc
Confidence 999999999999999887653
No 110
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.96 E-value=5e-29 Score=170.03 Aligned_cols=154 Identities=23% Similarity=0.370 Sum_probs=115.5
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEE
Q psy4710 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMC 83 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v 83 (192)
..+||+++|++|+|||||++++..+.+.. +.++.+... .... .....+.+||+||++.+...+..+++.+|++++|
T Consensus 14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~-~~~~--~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V 89 (174)
T cd04153 14 KEYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNV-EEIV--YKNIRFLMWDIGGQESLRSSWNTYYTNTDAVILV 89 (174)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccce-EEEE--ECCeEEEEEECCCCHHHHHHHHHHhhcCCEEEEE
Confidence 46899999999999999999999887765 344444333 2222 3357899999999999988898899999999999
Q ss_pred EECCChhhhhchhhhhHHHHhhh-CCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHH-HHHH----HHcCCceEE
Q psy4710 84 FSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEG-RAMA----QKINAFAYL 157 (192)
Q Consensus 84 ~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~~ 157 (192)
+|+++++++....+.+...+... ..+.|+++++||+|+.... ..++. ..+. ...+ ++++
T Consensus 90 ~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~--------------~~~~i~~~l~~~~~~~~~-~~~~ 154 (174)
T cd04153 90 IDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAM--------------TPAEISESLGLTSIRDHT-WHIQ 154 (174)
T ss_pred EECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCC--------------CHHHHHHHhCcccccCCc-eEEE
Confidence 99999988877765555554432 3579999999999986521 11111 1111 1122 5789
Q ss_pred EeccCCcCCHHHHHHHHHH
Q psy4710 158 ECSAKSKEGVREVFETATR 176 (192)
Q Consensus 158 ~~Sa~~~~gi~~~~~~i~~ 176 (192)
++||++|+|++++|++|.+
T Consensus 155 ~~SA~~g~gi~e~~~~l~~ 173 (174)
T cd04153 155 GCCALTGEGLPEGLDWIAS 173 (174)
T ss_pred ecccCCCCCHHHHHHHHhc
Confidence 9999999999999999864
No 111
>KOG0083|consensus
Probab=99.96 E-value=2.1e-30 Score=160.98 Aligned_cols=159 Identities=33% Similarity=0.599 Sum_probs=138.8
Q ss_pred EEcCCCCchhHHHHHHhhCCCCCcc-cCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEEEECC
Q psy4710 10 IVGDGACGKTCLLIVFSKDQFPEVY-VPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSID 87 (192)
Q Consensus 10 v~G~~~~GKSsli~~l~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 87 (192)
++|++++|||.|+-++..+.+-... ..+.+..+ .+.+..++..+++++|||+||++|++....+++.+|+.+++||+.
T Consensus 2 llgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydia 81 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIA 81 (192)
T ss_pred ccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeecc
Confidence 6899999999999888887765443 44445444 455677889999999999999999999999999999999999999
Q ss_pred ChhhhhchhhhhHHHHhhhCC-CCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccCCcCC
Q psy4710 88 SPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEG 166 (192)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~-~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 166 (192)
+..||++. +.|+..+..+.+ .+.+.+++||+|+.+ .+.+..+++..+++.++ +||+++||++|.|
T Consensus 82 nkasfdn~-~~wlsei~ey~k~~v~l~llgnk~d~a~------------er~v~~ddg~kla~~y~-ipfmetsaktg~n 147 (192)
T KOG0083|consen 82 NKASFDNC-QAWLSEIHEYAKEAVALMLLGNKCDLAH------------ERAVKRDDGEKLAEAYG-IPFMETSAKTGFN 147 (192)
T ss_pred cchhHHHH-HHHHHHHHHHHHhhHhHhhhccccccch------------hhccccchHHHHHHHHC-CCceecccccccc
Confidence 99999999 589999988763 678899999999987 47788899999999999 5999999999999
Q ss_pred HHHHHHHHHHHHhhhc
Q psy4710 167 VREVFETATRAALQVK 182 (192)
Q Consensus 167 i~~~~~~i~~~~~~~~ 182 (192)
++..|-.|.+.+...+
T Consensus 148 vd~af~~ia~~l~k~~ 163 (192)
T KOG0083|consen 148 VDLAFLAIAEELKKLK 163 (192)
T ss_pred HhHHHHHHHHHHHHhc
Confidence 9999999999887764
No 112
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.96 E-value=5.5e-29 Score=167.95 Aligned_cols=152 Identities=20% Similarity=0.266 Sum_probs=110.6
Q ss_pred eEEEEcCCCCchhHHHHHHhhCCC-CCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEEEE
Q psy4710 7 KLVIVGDGACGKTCLLIVFSKDQF-PEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFS 85 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 85 (192)
+|+++|++|+|||||++++.+..+ ...+.++.+.... .+....+.+.+||+||++.+...+..+++.+|++++|+|
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~---~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D 77 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVE---SFEKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVID 77 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceE---EEEECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEe
Confidence 689999999999999999998753 4444455442221 123356789999999999999999999999999999999
Q ss_pred CCChhhhhchhhhhHHHHhhh----CCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHH---H-HcCCceEE
Q psy4710 86 IDSPDSLENIPEKWTPEVKHF----CPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMA---Q-KINAFAYL 157 (192)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~----~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~ 157 (192)
++++.++.... .|+..+... ..+.|+++|+||+|+..... ..+..... . ....++++
T Consensus 78 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~--------------~~~~~~~l~~~~~~~~~~~~~ 142 (162)
T cd04157 78 SSDRLRLVVVK-DELELLLNHPDIKHRRVPILFFANKMDLPDALT--------------AVKITQLLGLENIKDKPWHIF 142 (162)
T ss_pred CCcHHHHHHHH-HHHHHHHcCcccccCCCCEEEEEeCccccCCCC--------------HHHHHHHhCCccccCceEEEE
Confidence 99998887764 444443221 14799999999999865321 11111111 0 01124689
Q ss_pred EeccCCcCCHHHHHHHHHH
Q psy4710 158 ECSAKSKEGVREVFETATR 176 (192)
Q Consensus 158 ~~Sa~~~~gi~~~~~~i~~ 176 (192)
++||++|.|++++|++|.+
T Consensus 143 ~~Sa~~g~gv~~~~~~l~~ 161 (162)
T cd04157 143 ASNALTGEGLDEGVQWLQA 161 (162)
T ss_pred EeeCCCCCchHHHHHHHhc
Confidence 9999999999999999864
No 113
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.96 E-value=8.1e-29 Score=166.53 Aligned_cols=151 Identities=21% Similarity=0.322 Sum_probs=111.3
Q ss_pred eEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEEEEC
Q psy4710 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSI 86 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 86 (192)
||+++|++++|||||++++..+.+... .++.+... .. ++.....+++||+||++.+...+..+++.+|++++|+|+
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~~-~~t~~~~~-~~--~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~ 76 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVTT-IPTIGFNV-ET--VTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDS 76 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcCc-CCccCcCe-EE--EEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEEC
Confidence 799999999999999999988776542 34333222 12 233457899999999999999999999999999999999
Q ss_pred CChhhhhchhhhhHHHHhh-hCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHH-HHH----HHcCCceEEEec
Q psy4710 87 DSPDSLENIPEKWTPEVKH-FCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGR-AMA----QKINAFAYLECS 160 (192)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~~S 160 (192)
+++.++....+.|...++. ...+.|+++++||+|+..... ..+.. .+. ... ..+++++|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~--------------~~~i~~~~~~~~~~~~-~~~~~~~S 141 (158)
T cd04151 77 TDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALS--------------EAEISEKLGLSELKDR-TWSIFKTS 141 (158)
T ss_pred CCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCC--------------HHHHHHHhCccccCCC-cEEEEEee
Confidence 9988777665555555443 235799999999999865321 11111 111 011 14799999
Q ss_pred cCCcCCHHHHHHHHHH
Q psy4710 161 AKSKEGVREVFETATR 176 (192)
Q Consensus 161 a~~~~gi~~~~~~i~~ 176 (192)
|+++.|++++|+++.+
T Consensus 142 a~~~~gi~~l~~~l~~ 157 (158)
T cd04151 142 AIKGEGLDEGMDWLVN 157 (158)
T ss_pred ccCCCCHHHHHHHHhc
Confidence 9999999999999865
No 114
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.96 E-value=2.1e-28 Score=166.81 Aligned_cols=163 Identities=26% Similarity=0.423 Sum_probs=120.2
Q ss_pred ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy4710 3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 82 (192)
Q Consensus 3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 82 (192)
..++||+++|+.||||||+++++..+.... ..|+.+.. ...+.+ .+..+.+||++|+..++..|..+++++|++||
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~~~~~~-~~pT~g~~-~~~i~~--~~~~~~~~d~gG~~~~~~~w~~y~~~~~~iIf 87 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKNGEISE-TIPTIGFN-IEEIKY--KGYSLTIWDLGGQESFRPLWKSYFQNADGIIF 87 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHSSSEEE-EEEESSEE-EEEEEE--TTEEEEEEEESSSGGGGGGGGGGHTTESEEEE
T ss_pred CcEEEEEEECCCccchHHHHHHhhhccccc-cCcccccc-cceeee--CcEEEEEEeccccccccccceeeccccceeEE
Confidence 568999999999999999999998765433 23333322 222333 45789999999999999999999999999999
Q ss_pred EEECCChhhhhchhhhhHHHHhhh-CCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEecc
Q psy4710 83 CFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSA 161 (192)
Q Consensus 83 v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 161 (192)
|+|.++.+.+....+.+...+... ..+.|++|++||.|+.+.....+....+.... +.. ...+.++.+||
T Consensus 88 VvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~l~~--------l~~-~~~~~v~~~sa 158 (175)
T PF00025_consen 88 VVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMSEEEIKEYLGLEK--------LKN-KRPWSVFSCSA 158 (175)
T ss_dssp EEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHTTGGG--------TTS-SSCEEEEEEBT
T ss_pred EEecccceeecccccchhhhcchhhcccceEEEEeccccccCcchhhHHHhhhhhhh--------ccc-CCceEEEeeec
Confidence 999999988888876666666542 35899999999999876433222111111110 001 12367899999
Q ss_pred CCcCCHHHHHHHHHHHH
Q psy4710 162 KSKEGVREVFETATRAA 178 (192)
Q Consensus 162 ~~~~gi~~~~~~i~~~~ 178 (192)
.+|+|+.+.++||.+.+
T Consensus 159 ~~g~Gv~e~l~WL~~~~ 175 (175)
T PF00025_consen 159 KTGEGVDEGLEWLIEQI 175 (175)
T ss_dssp TTTBTHHHHHHHHHHHH
T ss_pred cCCcCHHHHHHHHHhcC
Confidence 99999999999998764
No 115
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.96 E-value=2e-28 Score=169.38 Aligned_cols=158 Identities=23% Similarity=0.395 Sum_probs=115.7
Q ss_pred ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy4710 3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 82 (192)
Q Consensus 3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 82 (192)
..+.||+++|++|||||||++++.+..+.. +.++.... ...+.+. +..+.+||+||+..+...|..+++.+|++++
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~~-~~~T~~~~-~~~i~~~--~~~~~l~D~~G~~~~~~~~~~~~~~ad~iil 92 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKDDRLAQ-HVPTLHPT-SEELTIG--NIKFKTFDLGGHEQARRLWKDYFPEVDGIVF 92 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCcc-cCCccCcc-eEEEEEC--CEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence 357899999999999999999999877643 33433322 2233333 4688999999999888888888999999999
Q ss_pred EEECCChhhhhchhhhhHHHHhhh-CCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHH-----------
Q psy4710 83 CFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQK----------- 150 (192)
Q Consensus 83 v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 150 (192)
|+|+++.+++......+...+... ..+.|+++++||+|+.... ...+.+.....
T Consensus 93 V~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~--------------~~~~~~~~~~~~~~~~~~~~~~ 158 (190)
T cd00879 93 LVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGAV--------------SEEELRQALGLYGTTTGKGVSL 158 (190)
T ss_pred EEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCCc--------------CHHHHHHHhCcccccccccccc
Confidence 999999888877654444444322 2479999999999986422 22222222211
Q ss_pred ---c-CCceEEEeccCCcCCHHHHHHHHHHHH
Q psy4710 151 ---I-NAFAYLECSAKSKEGVREVFETATRAA 178 (192)
Q Consensus 151 ---~-~~~~~~~~Sa~~~~gi~~~~~~i~~~~ 178 (192)
. ..++++++||++++|++++|++|.+.+
T Consensus 159 ~~~~~~~~~~~~~Sa~~~~gv~e~~~~l~~~~ 190 (190)
T cd00879 159 KVSGIRPIEVFMCSVVKRQGYGEAFRWLSQYL 190 (190)
T ss_pred cccCceeEEEEEeEecCCCChHHHHHHHHhhC
Confidence 1 124789999999999999999997653
No 116
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.96 E-value=2.3e-28 Score=165.64 Aligned_cols=157 Identities=17% Similarity=0.268 Sum_probs=115.3
Q ss_pred eEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEEEEC
Q psy4710 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSI 86 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 86 (192)
+|+++|++|||||||++++.+. +...+.++.+.. ...+ ......+.+||+||+..+...|..+++++|++++|+|+
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~-~~~~--~~~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~ 76 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFT-PTKL--RLDKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDS 76 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCcccce-EEEE--EECCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEEC
Confidence 5899999999999999999977 555555555433 2223 33567899999999999999999999999999999999
Q ss_pred CChhhhhchhhhhHHHHhhh--CCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcC-CceEEEeccCC
Q psy4710 87 DSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKIN-AFAYLECSAKS 163 (192)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~ 163 (192)
++..++.... .|+..+... ..+.|+++|+||.|+.......+....+. ...+++..+ .++++++||++
T Consensus 77 s~~~s~~~~~-~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~--------l~~~~~~~~~~~~~~~~Sa~~ 147 (167)
T cd04161 77 SDDDRVQEVK-EILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLS--------LEKLVNENKSLCHIEPCSAIE 147 (167)
T ss_pred CchhHHHHHH-HHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcC--------cccccCCCCceEEEEEeEcee
Confidence 9998888885 455544332 24799999999999976543222222111 112222222 25788899999
Q ss_pred c------CCHHHHHHHHHH
Q psy4710 164 K------EGVREVFETATR 176 (192)
Q Consensus 164 ~------~gi~~~~~~i~~ 176 (192)
| .|+++.|+||..
T Consensus 148 g~~~~~~~g~~~~~~wl~~ 166 (167)
T cd04161 148 GLGKKIDPSIVEGLRWLLA 166 (167)
T ss_pred CCCCccccCHHHHHHHHhc
Confidence 8 899999999964
No 117
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.96 E-value=3.8e-28 Score=166.98 Aligned_cols=168 Identities=16% Similarity=0.265 Sum_probs=115.9
Q ss_pred ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy4710 3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 82 (192)
Q Consensus 3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 82 (192)
..+++|+++|++|||||||++++.+..+... .++.... ...+.. .++.+.+||+||+..+...+..+++++|++++
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~~-~~t~~~~-~~~~~~--~~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~ 90 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQH-QPTQHPT-SEELAI--GNIKFTTFDLGGHQQARRLWKDYFPEVNGIVY 90 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCccc-CCccccc-eEEEEE--CCEEEEEEECCCCHHHHHHHHHHhCCCCEEEE
Confidence 4579999999999999999999998766432 2332221 122222 35789999999999988889999999999999
Q ss_pred EEECCChhhhhchhhhhHHHHhh-hCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEecc
Q psy4710 83 CFSIDSPDSLENIPEKWTPEVKH-FCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSA 161 (192)
Q Consensus 83 v~d~~~~~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 161 (192)
|+|+++++++......+...+.. ...+.|+++|+||+|+.......+....+........ .-....+...++++||
T Consensus 91 vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~l~l~~~~~~---~~~~~~~~~~i~~~Sa 167 (184)
T smart00178 91 LVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAASEDELRYALGLTNTTGS---KGKVGVRPLEVFMCSV 167 (184)
T ss_pred EEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCCCHHHHHHHcCCCccccc---ccccCCceeEEEEeec
Confidence 99999998887775444444432 2357999999999998643222211111111100000 0000112356899999
Q ss_pred CCcCCHHHHHHHHHHH
Q psy4710 162 KSKEGVREVFETATRA 177 (192)
Q Consensus 162 ~~~~gi~~~~~~i~~~ 177 (192)
++++|++++++||..+
T Consensus 168 ~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 168 VRRMGYGEGFKWLSQY 183 (184)
T ss_pred ccCCChHHHHHHHHhh
Confidence 9999999999999865
No 118
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.96 E-value=6.3e-28 Score=163.57 Aligned_cols=153 Identities=26% Similarity=0.326 Sum_probs=109.1
Q ss_pred eEEEEcCCCCchhHHHHHHhhCCCC------CcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEE
Q psy4710 7 KLVIVGDGACGKTCLLIVFSKDQFP------EVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVI 80 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~ 80 (192)
+|+++|++|+|||||++++.+.... ..+.++..... ..+.+ .+..+.+||+||++.+...+...++.+|++
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~-~~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 77 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNI-GTIEV--GNARLKFWDLGGQESLRSLWDKYYAECHAI 77 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccce-EEEEE--CCEEEEEEECCCChhhHHHHHHHhCCCCEE
Confidence 6899999999999999999864332 12222222222 22233 357899999999999988888899999999
Q ss_pred EEEEECCChhhhhchhhhhHHHHhhh-CCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHH------cCC
Q psy4710 81 LMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQK------INA 153 (192)
Q Consensus 81 i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~ 153 (192)
++|+|+++++++......+...++.. ..+.|+++++||+|+.... ...+...+... ...
T Consensus 78 v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~--------------~~~~~~~~~~~~~~~~~~~~ 143 (167)
T cd04160 78 IYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDAL--------------SVEEIKEVFQDKAEEIGRRD 143 (167)
T ss_pred EEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCC--------------CHHHHHHHhccccccccCCc
Confidence 99999999888877754344444322 2479999999999985531 11222222111 122
Q ss_pred ceEEEeccCCcCCHHHHHHHHHH
Q psy4710 154 FAYLECSAKSKEGVREVFETATR 176 (192)
Q Consensus 154 ~~~~~~Sa~~~~gi~~~~~~i~~ 176 (192)
++++++||++|+|+++++++|.+
T Consensus 144 ~~~~~~Sa~~g~gv~e~~~~l~~ 166 (167)
T cd04160 144 CLVLPVSALEGTGVREGIEWLVE 166 (167)
T ss_pred eEEEEeeCCCCcCHHHHHHHHhc
Confidence 58999999999999999999864
No 119
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.96 E-value=7.8e-28 Score=162.03 Aligned_cols=158 Identities=23% Similarity=0.388 Sum_probs=111.7
Q ss_pred eEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEEEEC
Q psy4710 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSI 86 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 86 (192)
+|+++|++|+|||||++++.+..+... .++.... ...+.. .....+.+||+||+..+...+...++.+|++++|+|+
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~-~~t~~~~-~~~~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~ 77 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTT-IPTVGFN-VEMLQL-EKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDS 77 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccc-cCccCcc-eEEEEe-CCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEEC
Confidence 689999999999999999999887543 3333322 222222 3457899999999999888888889999999999999
Q ss_pred CChhhhhchhhhhHHHHhh-hCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccCCcC
Q psy4710 87 DSPDSLENIPEKWTPEVKH-FCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKE 165 (192)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 165 (192)
+++.++......+...+.. ...+.|+++|+||+|+.......+....+. ...+.... ..+++++||++|+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~--------~~~~~~~~-~~~~~~~Sa~~~~ 148 (160)
T cd04156 78 SDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAEEITRRFK--------LKKYCSDR-DWYVQPCSAVTGE 148 (160)
T ss_pred CcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcCHHHHHHHcC--------CcccCCCC-cEEEEecccccCC
Confidence 9998888875444444443 225899999999999854211100000000 00111111 2478999999999
Q ss_pred CHHHHHHHHHH
Q psy4710 166 GVREVFETATR 176 (192)
Q Consensus 166 gi~~~~~~i~~ 176 (192)
|++++|++|.+
T Consensus 149 gv~~~~~~i~~ 159 (160)
T cd04156 149 GLAEAFRKLAS 159 (160)
T ss_pred ChHHHHHHHhc
Confidence 99999999854
No 120
>KOG0097|consensus
Probab=99.96 E-value=7.4e-28 Score=151.27 Aligned_cols=164 Identities=30% Similarity=0.540 Sum_probs=143.2
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy4710 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 82 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 82 (192)
+-+|-+++|+-|+|||.|+.++...++-.....+.+-.+ .+.++..+..+++++|||.|+++|+.....+++.+.+.++
T Consensus 10 yifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaagalm 89 (215)
T KOG0097|consen 10 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALM 89 (215)
T ss_pred heEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccceeE
Confidence 457899999999999999999999888766655655444 6777889999999999999999999999999999999999
Q ss_pred EEECCChhhhhchhhhhHHHHhhhC-CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEecc
Q psy4710 83 CFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSA 161 (192)
Q Consensus 83 v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 161 (192)
|||++.+..+.++. .|+...+... |+..+++++||.|+.. ++.+..+++.+|+++.+ ..|+++||
T Consensus 90 vyditrrstynhls-swl~dar~ltnpnt~i~lignkadle~------------qrdv~yeeak~faeeng-l~fle~sa 155 (215)
T KOG0097|consen 90 VYDITRRSTYNHLS-SWLTDARNLTNPNTVIFLIGNKADLES------------QRDVTYEEAKEFAEENG-LMFLEASA 155 (215)
T ss_pred EEEehhhhhhhhHH-HHHhhhhccCCCceEEEEecchhhhhh------------cccCcHHHHHHHHhhcC-eEEEEecc
Confidence 99999998888884 7888776643 6888999999999977 68899999999999998 58999999
Q ss_pred CCcCCHHHHHHHHHHHHhhh
Q psy4710 162 KSKEGVREVFETATRAALQV 181 (192)
Q Consensus 162 ~~~~gi~~~~~~i~~~~~~~ 181 (192)
++|.++++.|-...++++..
T Consensus 156 ktg~nvedafle~akkiyqn 175 (215)
T KOG0097|consen 156 KTGQNVEDAFLETAKKIYQN 175 (215)
T ss_pred cccCcHHHHHHHHHHHHHHh
Confidence 99999999887777666543
No 121
>KOG0073|consensus
Probab=99.95 E-value=1.4e-27 Score=153.32 Aligned_cols=166 Identities=16% Similarity=0.238 Sum_probs=125.5
Q ss_pred ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy4710 3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 82 (192)
Q Consensus 3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 82 (192)
.++++|+++|..||||||++++|.+.... ...|+.+-.. + ......+++.+||++|+...++.|.+++..+|++|+
T Consensus 14 erE~riLiLGLdNsGKTti~~kl~~~~~~-~i~pt~gf~I-k--tl~~~~~~L~iwDvGGq~~lr~~W~nYfestdglIw 89 (185)
T KOG0073|consen 14 EREVRILILGLDNSGKTTIVKKLLGEDTD-TISPTLGFQI-K--TLEYKGYTLNIWDVGGQKTLRSYWKNYFESTDGLIW 89 (185)
T ss_pred hheeEEEEEecCCCCchhHHHHhcCCCcc-ccCCccceee-E--EEEecceEEEEEEcCCcchhHHHHHHhhhccCeEEE
Confidence 46999999999999999999999988733 3244433322 2 234567899999999999999999999999999999
Q ss_pred EEECCChhhhhchhhhhHHHHhh-hCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEecc
Q psy4710 83 CFSIDSPDSLENIPEKWTPEVKH-FCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSA 161 (192)
Q Consensus 83 v~d~~~~~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 161 (192)
|+|.+|+..+++-...+-..+.. ...+.|++|++||.|+.++....+... .....+++.... ++++.||+
T Consensus 90 vvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~--------~~~L~~l~ks~~-~~l~~cs~ 160 (185)
T KOG0073|consen 90 VVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISK--------ALDLEELAKSHH-WRLVKCSA 160 (185)
T ss_pred EEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHH--------hhCHHHhccccC-ceEEEEec
Confidence 99999998887776555444442 335799999999999986432111110 112223333344 79999999
Q ss_pred CCcCCHHHHHHHHHHHHhhh
Q psy4710 162 KSKEGVREVFETATRAALQV 181 (192)
Q Consensus 162 ~~~~gi~~~~~~i~~~~~~~ 181 (192)
.+|+++.+-++|+...+.++
T Consensus 161 ~tge~l~~gidWL~~~l~~r 180 (185)
T KOG0073|consen 161 VTGEDLLEGIDWLCDDLMSR 180 (185)
T ss_pred cccccHHHHHHHHHHHHHHH
Confidence 99999999999999988873
No 122
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.95 E-value=1.4e-27 Score=160.50 Aligned_cols=152 Identities=22% Similarity=0.341 Sum_probs=112.6
Q ss_pred eEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEEEEC
Q psy4710 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSI 86 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 86 (192)
||+++|++|+|||||++++.+..+.. +.++..... ..+ ......+.+||+||+..+...+..+++.+|++++|+|+
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~~-~~~t~~~~~-~~~--~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~ 76 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVVT-TIPTIGFNV-ETV--EYKNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDS 76 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCCC-CCCCcCcce-EEE--EECCEEEEEEECCCChhhHHHHHHHhccCCEEEEEEEC
Confidence 79999999999999999999987433 233333222 222 23357899999999999998999999999999999999
Q ss_pred CChhhhhchhhhhHHHHhhh-CCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHH----HcCCceEEEecc
Q psy4710 87 DSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQ----KINAFAYLECSA 161 (192)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~Sa 161 (192)
++++++......+....... ..+.|+++++||+|+..... ..+...... ....++++++||
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~Sa 142 (158)
T cd00878 77 SDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALS--------------VSELIEKLGLEKILGRRWHIQPCSA 142 (158)
T ss_pred CCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccccC--------------HHHHHHhhChhhccCCcEEEEEeeC
Confidence 99988888864444444432 35899999999999876321 111222111 112358999999
Q ss_pred CCcCCHHHHHHHHHH
Q psy4710 162 KSKEGVREVFETATR 176 (192)
Q Consensus 162 ~~~~gi~~~~~~i~~ 176 (192)
++|.|++++|++|..
T Consensus 143 ~~~~gv~~~~~~l~~ 157 (158)
T cd00878 143 VTGDGLDEGLDWLLQ 157 (158)
T ss_pred CCCCCHHHHHHHHhh
Confidence 999999999999875
No 123
>KOG0075|consensus
Probab=99.95 E-value=4.4e-28 Score=152.87 Aligned_cols=164 Identities=23% Similarity=0.342 Sum_probs=137.2
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEE
Q psy4710 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMC 83 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v 83 (192)
.++.+.++|..+||||||+|....+.+.+.-.|+.+-+.. .+..+.+.+.+||.||+..|++.|..+++.++++++|
T Consensus 19 ~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmr---k~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~ 95 (186)
T KOG0075|consen 19 EEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYV 95 (186)
T ss_pred heeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeE---EeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEE
Confidence 4788999999999999999999998887776777665543 4567789999999999999999999999999999999
Q ss_pred EECCChhhhhchhhhhHHHHhhhC-CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccC
Q psy4710 84 FSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAK 162 (192)
Q Consensus 84 ~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 162 (192)
+|+.+++.++...+.+..++.+.. .++|++|++||.|+.++.......+.+....+++.+ +.+|.+|++
T Consensus 96 VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~~~li~rmgL~sitdRE----------vcC~siSck 165 (186)
T KOG0075|consen 96 VDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSKIALIERMGLSSITDRE----------VCCFSISCK 165 (186)
T ss_pred eecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccccHHHHHHHhCccccccce----------EEEEEEEEc
Confidence 999999999988877777776543 589999999999998876665555555554444333 578999999
Q ss_pred CcCCHHHHHHHHHHHHhh
Q psy4710 163 SKEGVREVFETATRAALQ 180 (192)
Q Consensus 163 ~~~gi~~~~~~i~~~~~~ 180 (192)
+..||+.+.+|+.++.-.
T Consensus 166 e~~Nid~~~~Wli~hsk~ 183 (186)
T KOG0075|consen 166 EKVNIDITLDWLIEHSKS 183 (186)
T ss_pred CCccHHHHHHHHHHHhhh
Confidence 999999999999987643
No 124
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.95 E-value=1.1e-26 Score=160.89 Aligned_cols=150 Identities=21% Similarity=0.331 Sum_probs=115.6
Q ss_pred eeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEEC-----CeEEEEEEEeCCCCCcccccccccCCCCCE
Q psy4710 6 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVD-----SKQVELALWDTAGQEDYDRLRPLSYPDTDV 79 (192)
Q Consensus 6 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~-----~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ 79 (192)
+||+++|++++|||||++++.++.+...+.++.+... .+.+.+. +..+.+.+||++|++.|...+..+++++|+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 5899999999999999999999999888777766433 3334442 467899999999999999999999999999
Q ss_pred EEEEEECCChhhhhchhhhhHHHHhhh--------------------CCCCcEEEEeecccccCCccchhhhhhccCCCC
Q psy4710 80 ILMCFSIDSPDSLENIPEKWTPEVKHF--------------------CPNVPIILVGNKKDLRNDPNTIKELNKMKQEPV 139 (192)
Q Consensus 80 ~i~v~d~~~~~~~~~~~~~~~~~~~~~--------------------~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~ 139 (192)
+|+|||++++.+++++. .|+..+... .++.|++||+||.|+.+.... ....
T Consensus 81 iIlVyDvtn~~Sf~~l~-~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~--------~~~~ 151 (202)
T cd04102 81 IILVHDLTNRKSSQNLQ-RWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKES--------SGNL 151 (202)
T ss_pred EEEEEECcChHHHHHHH-HHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhccc--------chHH
Confidence 99999999999999995 888877542 136899999999999763210 0111
Q ss_pred CHHHHHHHHHHcCCceEEEeccCCcC
Q psy4710 140 KPEEGRAMAQKINAFAYLECSAKSKE 165 (192)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~Sa~~~~ 165 (192)
.......++++.+. +.++.++.+..
T Consensus 152 ~~~~~~~ia~~~~~-~~i~~~c~~~~ 176 (202)
T cd04102 152 VLTARGFVAEQGNA-EEINLNCTNGR 176 (202)
T ss_pred HhhHhhhHHHhcCC-ceEEEecCCcc
Confidence 12234456777884 77777776553
No 125
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.95 E-value=1.7e-26 Score=156.67 Aligned_cols=156 Identities=23% Similarity=0.172 Sum_probs=105.0
Q ss_pred eeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCccccccc---------ccCCC
Q psy4710 6 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRP---------LSYPD 76 (192)
Q Consensus 6 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~---------~~~~~ 76 (192)
.+|+++|++|+|||||+++|.+..+.....+..+... ........+..+.+|||||+........ .....
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 79 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSL-FVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHL 79 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccce-eEEEEccCceEEEEEECCCcCCccccCCchHHHHHHHHHHhc
Confidence 3799999999999999999999876433222221111 1112333567899999999743211100 01123
Q ss_pred CCEEEEEEECCChhhh--hchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCc
Q psy4710 77 TDVILMCFSIDSPDSL--ENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAF 154 (192)
Q Consensus 77 ~~~~i~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (192)
+|++++|+|+++..++ ... ..|...+....++.|+++|+||+|+..... .. +..++.... ..
T Consensus 80 ~d~~l~v~d~~~~~~~~~~~~-~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~------------~~--~~~~~~~~~-~~ 143 (168)
T cd01897 80 RAAVLFLFDPSETCGYSLEEQ-LSLFEEIKPLFKNKPVIVVLNKIDLLTFED------------LS--EIEEEEELE-GE 143 (168)
T ss_pred cCcEEEEEeCCcccccchHHH-HHHHHHHHhhcCcCCeEEEEEccccCchhh------------HH--HHHHhhhhc-cC
Confidence 6899999999987543 333 356666666556899999999999965321 11 123343333 36
Q ss_pred eEEEeccCCcCCHHHHHHHHHHHH
Q psy4710 155 AYLECSAKSKEGVREVFETATRAA 178 (192)
Q Consensus 155 ~~~~~Sa~~~~gi~~~~~~i~~~~ 178 (192)
+++++||++|.|++++++++.+.+
T Consensus 144 ~~~~~Sa~~~~gi~~l~~~l~~~~ 167 (168)
T cd01897 144 EVLKISTLTEEGVDEVKNKACELL 167 (168)
T ss_pred ceEEEEecccCCHHHHHHHHHHHh
Confidence 899999999999999999998876
No 126
>PLN00023 GTP-binding protein; Provisional
Probab=99.95 E-value=3.4e-26 Score=165.75 Aligned_cols=143 Identities=22% Similarity=0.377 Sum_probs=115.6
Q ss_pred ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEEC-------------CeEEEEEEEeCCCCCcccc
Q psy4710 3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVD-------------SKQVELALWDTAGQEDYDR 68 (192)
Q Consensus 3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~-------------~~~~~~~l~D~~g~~~~~~ 68 (192)
...+||+++|+.|+|||||+++|.++.+...+.++.+..+ .+.+.++ ...+.+.||||+|++.|..
T Consensus 19 ~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfrs 98 (334)
T PLN00023 19 CGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYKD 98 (334)
T ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhhh
Confidence 4679999999999999999999999998887777776544 3444443 2468899999999999999
Q ss_pred cccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhC-------------CCCcEEEEeecccccCCccchhhhhhcc
Q psy4710 69 LRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-------------PNVPIILVGNKKDLRNDPNTIKELNKMK 135 (192)
Q Consensus 69 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-------------~~~p~ivv~nK~D~~~~~~~~~~~~~~~ 135 (192)
++..++++++++|+|||+++..+++.+. .|+..+.... .+.|++||+||+|+.....
T Consensus 99 L~~~yyr~AdgiILVyDITdr~SFenL~-kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~--------- 168 (334)
T PLN00023 99 CRSLFYSQINGVIFVHDLSQRRTKTSLQ-KWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEG--------- 168 (334)
T ss_pred hhHHhccCCCEEEEEEeCCCHHHHHHHH-HHHHHHHHhcccccccccccccCCCCcEEEEEECcccccccc---------
Confidence 9999999999999999999999999994 7888887642 2589999999999965211
Q ss_pred CCC---CCHHHHHHHHHHcCCce
Q psy4710 136 QEP---VKPEEGRAMAQKINAFA 155 (192)
Q Consensus 136 ~~~---~~~~~~~~~~~~~~~~~ 155 (192)
.+. ...++++++++..+..+
T Consensus 169 ~r~~s~~~~e~a~~~A~~~g~l~ 191 (334)
T PLN00023 169 TRGSSGNLVDAARQWVEKQGLLP 191 (334)
T ss_pred ccccccccHHHHHHHHHHcCCCc
Confidence 012 35788889998876543
No 127
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.95 E-value=6.6e-27 Score=156.97 Aligned_cols=157 Identities=22% Similarity=0.329 Sum_probs=113.9
Q ss_pred eEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEEEEC
Q psy4710 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSI 86 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 86 (192)
.|+++|++|||||||++++.+..+...+.++.+.... .+.. ..+.+.+||+||+..+...+..+++.+|++++|+|+
T Consensus 1 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~-~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~ 77 (159)
T cd04159 1 EITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMR-KVTK--GNVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDA 77 (159)
T ss_pred CEEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceE-EEEE--CCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEEC
Confidence 3899999999999999999999888777666554433 2222 347899999999999998888999999999999999
Q ss_pred CChhhhhchhhhhHHHHhhh-CCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccCCcC
Q psy4710 87 DSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKE 165 (192)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 165 (192)
++..++......+....... ..+.|+++|+||+|+................ .... ..++++++|++++.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~---------~~~~-~~~~~~~~Sa~~~~ 147 (159)
T cd04159 78 ADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDELIEQMNLK---------SITD-REVSCYSISCKEKT 147 (159)
T ss_pred CCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCHHHHHHHhCcc---------cccC-CceEEEEEEeccCC
Confidence 99888777654444443321 2478999999999986532111111100000 0011 12578999999999
Q ss_pred CHHHHHHHHHH
Q psy4710 166 GVREVFETATR 176 (192)
Q Consensus 166 gi~~~~~~i~~ 176 (192)
|+++++++|.+
T Consensus 148 gi~~l~~~l~~ 158 (159)
T cd04159 148 NIDIVLDWLIK 158 (159)
T ss_pred ChHHHHHHHhh
Confidence 99999999865
No 128
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.94 E-value=3.5e-26 Score=155.42 Aligned_cols=156 Identities=20% Similarity=0.200 Sum_probs=104.6
Q ss_pred eEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcc----ccccccc---CCCCC
Q psy4710 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDY----DRLRPLS---YPDTD 78 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~----~~~~~~~---~~~~~ 78 (192)
+|+++|++|||||||+++|.+........+..+... ...+... ....+.+|||||+... ......+ ++.+|
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d 80 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVD-DGRSFVVADIPGLIEGASEGKGLGHRFLRHIERTR 80 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcC-CCCeEEEEecCcccCcccccCCchHHHHHHHHhCC
Confidence 689999999999999999997654222112221111 1111222 2247999999996421 1222222 34699
Q ss_pred EEEEEEECCCh-hhhhchhhhhHHHHhhhC---CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCc
Q psy4710 79 VILMCFSIDSP-DSLENIPEKWTPEVKHFC---PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAF 154 (192)
Q Consensus 79 ~~i~v~d~~~~-~~~~~~~~~~~~~~~~~~---~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (192)
++++|+|++++ ++++.+ ..|.+.+.... .+.|+++|+||+|+..... .......+.......
T Consensus 81 ~vi~v~D~~~~~~~~~~~-~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~-------------~~~~~~~~~~~~~~~ 146 (170)
T cd01898 81 LLLHVIDLSGDDDPVEDY-KTIRNELELYNPELLEKPRIVVLNKIDLLDEEE-------------LFELLKELLKELWGK 146 (170)
T ss_pred EEEEEEecCCCCCHHHHH-HHHHHHHHHhCccccccccEEEEEchhcCCchh-------------hHHHHHHHHhhCCCC
Confidence 99999999998 677776 46777666543 3789999999999865321 123333444443235
Q ss_pred eEEEeccCCcCCHHHHHHHHHHH
Q psy4710 155 AYLECSAKSKEGVREVFETATRA 177 (192)
Q Consensus 155 ~~~~~Sa~~~~gi~~~~~~i~~~ 177 (192)
+++++||+++.|++++|+++.+.
T Consensus 147 ~~~~~Sa~~~~gi~~l~~~i~~~ 169 (170)
T cd01898 147 PVFPISALTGEGLDELLRKLAEL 169 (170)
T ss_pred CEEEEecCCCCCHHHHHHHHHhh
Confidence 89999999999999999998865
No 129
>KOG0070|consensus
Probab=99.94 E-value=1.2e-26 Score=152.70 Aligned_cols=165 Identities=21% Similarity=0.311 Sum_probs=130.7
Q ss_pred ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy4710 3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 82 (192)
Q Consensus 3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 82 (192)
..+.+|+++|.-+|||||++.+|..+....+ .|+.+-+.. .+...++.+++||.+|++.++..|..++++.+++||
T Consensus 15 ~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfnVE---~v~ykn~~f~vWDvGGq~k~R~lW~~Y~~~t~~lIf 90 (181)
T KOG0070|consen 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFNVE---TVEYKNISFTVWDVGGQEKLRPLWKHYFQNTQGLIF 90 (181)
T ss_pred cceEEEEEEeccCCCceeeeEeeccCCcccC-CCcccccee---EEEEcceEEEEEecCCCcccccchhhhccCCcEEEE
Confidence 4689999999999999999999998887766 666655433 234458899999999999999999999999999999
Q ss_pred EEECCChhhhhchhhhhHHHHhhhC-CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEecc
Q psy4710 83 CFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSA 161 (192)
Q Consensus 83 v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 161 (192)
|+|.+|++.+....+.+...+.... .+.|+++.+||.|+..+-+..+.-..+....+ .. ..+.+..++|
T Consensus 91 VvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~l~~l--------~~--~~w~iq~~~a 160 (181)
T KOG0070|consen 91 VVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKLGLHSL--------RS--RNWHIQSTCA 160 (181)
T ss_pred EEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCCHHHHHhHhhhhcc--------CC--CCcEEeeccc
Confidence 9999999999999877777776543 68999999999999876443222221111111 11 2256788999
Q ss_pred CCcCCHHHHHHHHHHHHhhh
Q psy4710 162 KSKEGVREVFETATRAALQV 181 (192)
Q Consensus 162 ~~~~gi~~~~~~i~~~~~~~ 181 (192)
.+|+|+.+.++|+...+..+
T Consensus 161 ~~G~GL~egl~wl~~~~~~~ 180 (181)
T KOG0070|consen 161 ISGEGLYEGLDWLSNNLKKR 180 (181)
T ss_pred cccccHHHHHHHHHHHHhcc
Confidence 99999999999999887654
No 130
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.94 E-value=3.7e-26 Score=155.77 Aligned_cols=160 Identities=20% Similarity=0.352 Sum_probs=111.1
Q ss_pred ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy4710 3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 82 (192)
Q Consensus 3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 82 (192)
..+++|+++|++|||||||++++.+..+.. ..++.+.. ...+... +..+.+||+||+..+...+..+++.+|++++
T Consensus 12 ~~~~~v~i~G~~g~GKStLl~~l~~~~~~~-~~~t~g~~-~~~i~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~ 87 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLASEDISH-ITPTQGFN-IKTVQSD--GFKLNVWDIGGQRAIRPYWRNYFENTDCLIY 87 (173)
T ss_pred CCccEEEEEccCCCCHHHHHHHHhcCCCcc-cCCCCCcc-eEEEEEC--CEEEEEEECCCCHHHHHHHHHHhcCCCEEEE
Confidence 357999999999999999999999876543 23333211 1222333 4678999999998888888888899999999
Q ss_pred EEECCChhhhhchhhhhHHHHhhh-CCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEecc
Q psy4710 83 CFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSA 161 (192)
Q Consensus 83 v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 161 (192)
|+|+++..++......+...+... ..+.|+++++||+|+............+... .+ ....++++++||
T Consensus 88 v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~i~~~l~~~--------~~--~~~~~~~~~~Sa 157 (173)
T cd04155 88 VIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAPAEEIAEALNLH--------DL--RDRTWHIQACSA 157 (173)
T ss_pred EEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCCHHHHHHHcCCc--------cc--CCCeEEEEEeEC
Confidence 999999888877654444444332 2479999999999986532111111100000 00 001135789999
Q ss_pred CCcCCHHHHHHHHHH
Q psy4710 162 KSKEGVREVFETATR 176 (192)
Q Consensus 162 ~~~~gi~~~~~~i~~ 176 (192)
++|+|++++|+||.+
T Consensus 158 ~~~~gi~~~~~~l~~ 172 (173)
T cd04155 158 KTGEGLQEGMNWVCK 172 (173)
T ss_pred CCCCCHHHHHHHHhc
Confidence 999999999999875
No 131
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.94 E-value=5.1e-26 Score=168.24 Aligned_cols=162 Identities=19% Similarity=0.181 Sum_probs=112.8
Q ss_pred eeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeE-EEEECCeEEEEEEEeCCCCCccc-------ccccccCCCC
Q psy4710 6 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDSKQVELALWDTAGQEDYD-------RLRPLSYPDT 77 (192)
Q Consensus 6 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~D~~g~~~~~-------~~~~~~~~~~ 77 (192)
-.|+++|.||||||||+++|.+........+.++..... .+.+. ....+.+||+||...-. ..+...++.+
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~-~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a 237 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVD-DYKSFVIADIPGLIEGASEGAGLGHRFLKHIERT 237 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeC-CCcEEEEEeCCCccCCCCccccHHHHHHHHhhhc
Confidence 358999999999999999999876543333333333222 22222 34578999999964311 1222345679
Q ss_pred CEEEEEEECCChhhhhchhhhhHHHHhhhC---CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCc
Q psy4710 78 DVILMCFSIDSPDSLENIPEKWTPEVKHFC---PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAF 154 (192)
Q Consensus 78 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~---~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (192)
+++++|+|+++.++++.+ +.|...+..+. .+.|+++|+||+|+.... .........+....+ .
T Consensus 238 ~vlI~ViD~s~~~s~e~~-~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~------------~~~~~~~~~~~~~~~-~ 303 (335)
T PRK12299 238 RLLLHLVDIEAVDPVEDY-KTIRNELEKYSPELADKPRILVLNKIDLLDEE------------EEREKRAALELAALG-G 303 (335)
T ss_pred CEEEEEEcCCCCCCHHHH-HHHHHHHHHhhhhcccCCeEEEEECcccCCch------------hHHHHHHHHHHHhcC-C
Confidence 999999999987777776 47877776654 378999999999986531 111222333344444 5
Q ss_pred eEEEeccCCcCCHHHHHHHHHHHHhhhc
Q psy4710 155 AYLECSAKSKEGVREVFETATRAALQVK 182 (192)
Q Consensus 155 ~~~~~Sa~~~~gi~~~~~~i~~~~~~~~ 182 (192)
+++++||++++|+++++++|.+.+.+.+
T Consensus 304 ~i~~iSAktg~GI~eL~~~L~~~l~~~~ 331 (335)
T PRK12299 304 PVFLISAVTGEGLDELLRALWELLEEAR 331 (335)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhhh
Confidence 8999999999999999999998876543
No 132
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.94 E-value=5.5e-26 Score=155.74 Aligned_cols=154 Identities=18% Similarity=0.192 Sum_probs=107.9
Q ss_pred eEEEEcCCCCchhHHHHHHhhCC--C-----CCcccCce-------eeeeeE--EEEE---CCeEEEEEEEeCCCCCccc
Q psy4710 7 KLVIVGDGACGKTCLLIVFSKDQ--F-----PEVYVPTV-------FENYVA--DIEV---DSKQVELALWDTAGQEDYD 67 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~~~--~-----~~~~~~~~-------~~~~~~--~~~~---~~~~~~~~l~D~~g~~~~~ 67 (192)
+|+++|++++|||||+++|++.. + ...+.++. .+.... ...+ +...+.+.+|||||++.+.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 79999999999999999998742 1 11111110 111111 1222 5567889999999999998
Q ss_pred ccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHH
Q psy4710 68 RLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAM 147 (192)
Q Consensus 68 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (192)
..+...++.+|++|+|+|++++.+.+.. ..|..... .+.|+++|+||+|+.... ......++
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~-~~~~~~~~---~~~~iiiv~NK~Dl~~~~--------------~~~~~~~~ 143 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQGVEAQTL-ANFYLALE---NNLEIIPVINKIDLPSAD--------------PERVKQQI 143 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCCccHhhH-HHHHHHHH---cCCCEEEEEECCCCCcCC--------------HHHHHHHH
Confidence 8888889999999999999987555544 23433322 378999999999985421 11122344
Q ss_pred HHHcCC--ceEEEeccCCcCCHHHHHHHHHHHH
Q psy4710 148 AQKINA--FAYLECSAKSKEGVREVFETATRAA 178 (192)
Q Consensus 148 ~~~~~~--~~~~~~Sa~~~~gi~~~~~~i~~~~ 178 (192)
++.++. .+++++||++|+|++++++++.+.+
T Consensus 144 ~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 176 (179)
T cd01890 144 EDVLGLDPSEAILVSAKTGLGVEDLLEAIVERI 176 (179)
T ss_pred HHHhCCCcccEEEeeccCCCCHHHHHHHHHhhC
Confidence 444442 2489999999999999999998775
No 133
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.94 E-value=1.9e-25 Score=149.64 Aligned_cols=157 Identities=38% Similarity=0.511 Sum_probs=119.3
Q ss_pred ceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeE-EEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEE
Q psy4710 5 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMC 83 (192)
Q Consensus 5 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v 83 (192)
++||+++|++|+|||||++++.+..+...+.++.+..... .+......+.+.+||+||+..+...+....+.++.++.+
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~ 80 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV 80 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence 4799999999999999999999988666655555544433 345566568899999999999888888888889999999
Q ss_pred EECCCh-hhhhchhhhhHHHHhhhCC-CCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEecc
Q psy4710 84 FSIDSP-DSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSA 161 (192)
Q Consensus 84 ~d~~~~-~~~~~~~~~~~~~~~~~~~-~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 161 (192)
+|.... .++......|...+..... +.|+++++||.|+.... . ...........+..+++++||
T Consensus 81 ~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-------------~-~~~~~~~~~~~~~~~~~~~sa 146 (161)
T TIGR00231 81 FDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAK-------------L-KTHVAFLFAKLNGEPIIPLSA 146 (161)
T ss_pred EEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcch-------------h-hHHHHHHHhhccCCceEEeec
Confidence 999876 5666554456555555544 89999999999996631 1 222233333444468999999
Q ss_pred CCcCCHHHHHHHHH
Q psy4710 162 KSKEGVREVFETAT 175 (192)
Q Consensus 162 ~~~~gi~~~~~~i~ 175 (192)
.++.|+++++++|.
T Consensus 147 ~~~~gv~~~~~~l~ 160 (161)
T TIGR00231 147 ETGKNIDSAFKIVE 160 (161)
T ss_pred CCCCCHHHHHHHhh
Confidence 99999999999864
No 134
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.94 E-value=6.3e-26 Score=149.85 Aligned_cols=135 Identities=23% Similarity=0.307 Sum_probs=97.7
Q ss_pred eEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCC-----cccccccccCCCCCEEE
Q psy4710 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQE-----DYDRLRPLSYPDTDVIL 81 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~-----~~~~~~~~~~~~~~~~i 81 (192)
||+++|++|+|||||+++|.+..+.. .++. .+.+. -.+|||||+. .+..... .++++|+++
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~~--~~t~------~~~~~-----~~~iDt~G~~~~~~~~~~~~~~-~~~~ad~vi 67 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEILY--KKTQ------AVEYN-----DGAIDTPGEYVENRRLYSALIV-TAADADVIA 67 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCcccc--ccce------eEEEc-----CeeecCchhhhhhHHHHHHHHH-HhhcCCEEE
Confidence 89999999999999999999876532 1221 11222 1689999972 2333323 478999999
Q ss_pred EEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEecc
Q psy4710 82 MCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSA 161 (192)
Q Consensus 82 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 161 (192)
+|+|++++.++... .|.... ..|+++|+||+|+.+. ....++..++++..+..+++++||
T Consensus 68 lv~d~~~~~s~~~~--~~~~~~-----~~p~ilv~NK~Dl~~~-------------~~~~~~~~~~~~~~~~~~~~~~Sa 127 (142)
T TIGR02528 68 LVQSATDPESRFPP--GFASIF-----VKPVIGLVTKIDLAEA-------------DVDIERAKELLETAGAEPIFEISS 127 (142)
T ss_pred EEecCCCCCcCCCh--hHHHhc-----cCCeEEEEEeeccCCc-------------ccCHHHHHHHHHHcCCCcEEEEec
Confidence 99999999877552 454432 3499999999998641 223445566666666458999999
Q ss_pred CCcCCHHHHHHHHH
Q psy4710 162 KSKEGVREVFETAT 175 (192)
Q Consensus 162 ~~~~gi~~~~~~i~ 175 (192)
+++.|++++|+++.
T Consensus 128 ~~~~gi~~l~~~l~ 141 (142)
T TIGR02528 128 VDEQGLEALVDYLN 141 (142)
T ss_pred CCCCCHHHHHHHHh
Confidence 99999999999874
No 135
>PTZ00099 rab6; Provisional
Probab=99.94 E-value=6.9e-25 Score=149.26 Aligned_cols=142 Identities=32% Similarity=0.491 Sum_probs=118.0
Q ss_pred CCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhh
Q psy4710 28 DQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF 106 (192)
Q Consensus 28 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~ 106 (192)
+.|.+.+.++.+..+ .+.+.++++.+.+.+|||||++.+...+..+++++|++|+|||++++++++.+. .|+..+...
T Consensus 3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~-~w~~~i~~~ 81 (176)
T PTZ00099 3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTT-KWIQDILNE 81 (176)
T ss_pred CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHH-HHHHHHHHh
Confidence 346667777776554 556778889999999999999999999999999999999999999999999995 677766543
Q ss_pred -CCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccCCcCCHHHHHHHHHHHHhhhcc
Q psy4710 107 -CPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVKK 183 (192)
Q Consensus 107 -~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~~~ 183 (192)
.++.|++||+||+|+.. .+.+...++..++..++ ..++++||++|.|++++|++|.+.+.+...
T Consensus 82 ~~~~~piilVgNK~DL~~------------~~~v~~~e~~~~~~~~~-~~~~e~SAk~g~nV~~lf~~l~~~l~~~~~ 146 (176)
T PTZ00099 82 RGKDVIIALVGNKTDLGD------------LRKVTYEEGMQKAQEYN-TMFHETSAKAGHNIKVLFKKIAAKLPNLDN 146 (176)
T ss_pred cCCCCeEEEEEECccccc------------ccCCCHHHHHHHHHHcC-CEEEEEECCCCCCHHHHHHHHHHHHHhccc
Confidence 35789999999999965 24466777778888777 489999999999999999999999876543
No 136
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.94 E-value=9.8e-26 Score=163.53 Aligned_cols=157 Identities=15% Similarity=0.099 Sum_probs=107.3
Q ss_pred eEEEEcCCCCchhHHHHHHhhCCCCCccc-CceeeeeeEEEEECCeEEEEEEEeCCCCCcccc--------cccccCCCC
Q psy4710 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYV-PTVFENYVADIEVDSKQVELALWDTAGQEDYDR--------LRPLSYPDT 77 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~--------~~~~~~~~~ 77 (192)
+|+++|++|+|||||+|+|++......+. +.++......+... .+..+.+|||||...... .....++.+
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~-~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~a 80 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTT-GASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGV 80 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEc-CCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhC
Confidence 68999999999999999999987654332 22222222333222 335699999999754321 123456789
Q ss_pred CEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEE
Q psy4710 78 DVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYL 157 (192)
Q Consensus 78 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (192)
|++++|+|+++..+.. +.+...+... +.|+++|+||+|+..... .......+....+..+++
T Consensus 81 Dvvl~VvD~~~~~~~~---~~i~~~l~~~--~~p~ilV~NK~Dl~~~~~-------------~~~~~~~~~~~~~~~~v~ 142 (270)
T TIGR00436 81 DLILFVVDSDQWNGDG---EFVLTKLQNL--KRPVVLTRNKLDNKFKDK-------------LLPLIDKYAILEDFKDIV 142 (270)
T ss_pred CEEEEEEECCCCCchH---HHHHHHHHhc--CCCEEEEEECeeCCCHHH-------------HHHHHHHHHhhcCCCceE
Confidence 9999999999865443 3455555543 789999999999864211 112233344434433789
Q ss_pred EeccCCcCCHHHHHHHHHHHHhhhc
Q psy4710 158 ECSAKSKEGVREVFETATRAALQVK 182 (192)
Q Consensus 158 ~~Sa~~~~gi~~~~~~i~~~~~~~~ 182 (192)
++||++|.|++++++++.+.+....
T Consensus 143 ~iSA~~g~gi~~L~~~l~~~l~~~~ 167 (270)
T TIGR00436 143 PISALTGDNTSFLAAFIEVHLPEGP 167 (270)
T ss_pred EEecCCCCCHHHHHHHHHHhCCCCC
Confidence 9999999999999999998876543
No 137
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.93 E-value=6.5e-25 Score=155.05 Aligned_cols=179 Identities=36% Similarity=0.528 Sum_probs=138.5
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeE-EEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy4710 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 82 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 82 (192)
..+||+++|+.|+|||||+++|.+..+...+.++.+..+.. ........+.+.+|||+|+++++..+..++.+++++++
T Consensus 4 ~~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~ 83 (219)
T COG1100 4 KEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILI 83 (219)
T ss_pred ceEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEE
Confidence 34899999999999999999999999999888887655543 33334447889999999999999999999999999999
Q ss_pred EEECCChhhhhchhhhhHHHHhhhCC-CCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHc--CCceEEEe
Q psy4710 83 CFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKI--NAFAYLEC 159 (192)
Q Consensus 83 v~d~~~~~~~~~~~~~~~~~~~~~~~-~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 159 (192)
++|..+..++....+.|...+....+ +.|+++++||+|+...............+.............. ....++++
T Consensus 84 ~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (219)
T COG1100 84 VYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLET 163 (219)
T ss_pred EEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEe
Confidence 99999977788888899999888774 7999999999999886544333222111222222222222222 12348999
Q ss_pred ccC--CcCCHHHHHHHHHHHHhhhc
Q psy4710 160 SAK--SKEGVREVFETATRAALQVK 182 (192)
Q Consensus 160 Sa~--~~~gi~~~~~~i~~~~~~~~ 182 (192)
|++ ++.++.++|..+...+....
T Consensus 164 s~~~~~~~~v~~~~~~~~~~~~~~~ 188 (219)
T COG1100 164 SAKSLTGPNVNELFKELLRKLLEEI 188 (219)
T ss_pred ecccCCCcCHHHHHHHHHHHHHHhh
Confidence 999 99999999999999987543
No 138
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.93 E-value=1.6e-25 Score=151.28 Aligned_cols=154 Identities=19% Similarity=0.202 Sum_probs=99.0
Q ss_pred eeEEEEcCCCCchhHHHHHHhhCC---CCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEE
Q psy4710 6 KKLVIVGDGACGKTCLLIVFSKDQ---FPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 81 (192)
Q Consensus 6 ~~i~v~G~~~~GKSsli~~l~~~~---~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i 81 (192)
+.|+++|++|+|||||+++|.+.. +.....++.+... .....+.. +..+.+|||||++.+.......++.+|+++
T Consensus 1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii 79 (164)
T cd04171 1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVL 79 (164)
T ss_pred CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEE
Confidence 368999999999999999998643 2222122222111 12223321 468999999999888766666788999999
Q ss_pred EEEECCCh---hhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHc--CCceE
Q psy4710 82 MCFSIDSP---DSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKI--NAFAY 156 (192)
Q Consensus 82 ~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 156 (192)
+|+|+++. ++.+.+ ..+... ...|+++++||+|+...... .....+..+..... ...++
T Consensus 80 ~V~d~~~~~~~~~~~~~-----~~~~~~-~~~~~ilv~NK~Dl~~~~~~----------~~~~~~~~~~~~~~~~~~~~~ 143 (164)
T cd04171 80 LVVAADEGIMPQTREHL-----EILELL-GIKRGLVVLTKADLVDEDWL----------ELVEEEIRELLAGTFLADAPI 143 (164)
T ss_pred EEEECCCCccHhHHHHH-----HHHHHh-CCCcEEEEEECccccCHHHH----------HHHHHHHHHHHHhcCcCCCcE
Confidence 99999873 222221 222221 13499999999998652110 00112222222221 23689
Q ss_pred EEeccCCcCCHHHHHHHHHH
Q psy4710 157 LECSAKSKEGVREVFETATR 176 (192)
Q Consensus 157 ~~~Sa~~~~gi~~~~~~i~~ 176 (192)
+++||++++|++++++.+.+
T Consensus 144 ~~~Sa~~~~~v~~l~~~l~~ 163 (164)
T cd04171 144 FPVSAVTGEGIEELKEYLDE 163 (164)
T ss_pred EEEeCCCCcCHHHHHHHHhh
Confidence 99999999999999998754
No 139
>PRK15494 era GTPase Era; Provisional
Probab=99.93 E-value=1.1e-24 Score=162.09 Aligned_cols=158 Identities=20% Similarity=0.215 Sum_probs=107.7
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceee--eeeEEEEECCeEEEEEEEeCCCCCc-cccccc-------cc
Q psy4710 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFE--NYVADIEVDSKQVELALWDTAGQED-YDRLRP-------LS 73 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~D~~g~~~-~~~~~~-------~~ 73 (192)
..++|+++|++|+|||||+|+|.+..+........++ .....+.. .+..+.+|||||... +..... ..
T Consensus 51 k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~--~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~ 128 (339)
T PRK15494 51 KTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITL--KDTQVILYDTPGIFEPKGSLEKAMVRCAWSS 128 (339)
T ss_pred ceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEe--CCeEEEEEECCCcCCCcccHHHHHHHHHHHH
Confidence 3569999999999999999999998775422211111 11222233 345789999999743 222211 23
Q ss_pred CCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHc-C
Q psy4710 74 YPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKI-N 152 (192)
Q Consensus 74 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 152 (192)
++.+|++++|+|..+ ++......|+..+... +.|.++|+||+|+... ...+..++.... .
T Consensus 129 l~~aDvil~VvD~~~--s~~~~~~~il~~l~~~--~~p~IlViNKiDl~~~---------------~~~~~~~~l~~~~~ 189 (339)
T PRK15494 129 LHSADLVLLIIDSLK--SFDDITHNILDKLRSL--NIVPIFLLNKIDIESK---------------YLNDIKAFLTENHP 189 (339)
T ss_pred hhhCCEEEEEEECCC--CCCHHHHHHHHHHHhc--CCCEEEEEEhhcCccc---------------cHHHHHHHHHhcCC
Confidence 678999999999765 3555545566666544 5788999999998531 122333333333 2
Q ss_pred CceEEEeccCCcCCHHHHHHHHHHHHhhhc
Q psy4710 153 AFAYLECSAKSKEGVREVFETATRAALQVK 182 (192)
Q Consensus 153 ~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~~ 182 (192)
..+++++||++|.|+++++++|...+.+..
T Consensus 190 ~~~i~~iSAktg~gv~eL~~~L~~~l~~~~ 219 (339)
T PRK15494 190 DSLLFPISALSGKNIDGLLEYITSKAKISP 219 (339)
T ss_pred CcEEEEEeccCccCHHHHHHHHHHhCCCCC
Confidence 357999999999999999999998877653
No 140
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.93 E-value=1.7e-24 Score=146.83 Aligned_cols=158 Identities=22% Similarity=0.256 Sum_probs=107.3
Q ss_pred eEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEEC-CeEEEEEEEeCCCCCcccccccccCCCCCEEEEEE
Q psy4710 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVD-SKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF 84 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 84 (192)
.|+++|++|+|||||+++|....+.....++.+... ...+... .....+.+|||||+..+...+...+..+|++++|+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~ 81 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV 81 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence 589999999999999999999887665433333222 1222222 14678999999999888888887888999999999
Q ss_pred ECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHH----Hc-CCceEEEe
Q psy4710 85 SIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQ----KI-NAFAYLEC 159 (192)
Q Consensus 85 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~ 159 (192)
|+++....+.. ..+..+.. .+.|+++|+||+|+...... .. ......+.. .+ ..++++++
T Consensus 82 d~~~~~~~~~~--~~~~~~~~--~~~p~ivv~NK~Dl~~~~~~--~~---------~~~~~~~~~~~~~~~~~~~~~~~~ 146 (168)
T cd01887 82 AADDGVMPQTI--EAIKLAKA--ANVPFIVALNKIDKPNANPE--RV---------KNELSELGLQGEDEWGGDVQIVPT 146 (168)
T ss_pred ECCCCccHHHH--HHHHHHHH--cCCCEEEEEEceecccccHH--HH---------HHHHHHhhccccccccCcCcEEEe
Confidence 99875322111 12223333 37899999999998643210 00 000111110 11 22589999
Q ss_pred ccCCcCCHHHHHHHHHHHHh
Q psy4710 160 SAKSKEGVREVFETATRAAL 179 (192)
Q Consensus 160 Sa~~~~gi~~~~~~i~~~~~ 179 (192)
|+++++|+++++++|.+...
T Consensus 147 Sa~~~~gi~~l~~~l~~~~~ 166 (168)
T cd01887 147 SAKTGEGIDDLLEAILLLAE 166 (168)
T ss_pred ecccCCCHHHHHHHHHHhhh
Confidence 99999999999999988754
No 141
>PRK04213 GTP-binding protein; Provisional
Probab=99.92 E-value=4.2e-25 Score=154.05 Aligned_cols=157 Identities=18% Similarity=0.144 Sum_probs=101.8
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCC-----------Ccccccccc
Q psy4710 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQ-----------EDYDRLRPL 72 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~-----------~~~~~~~~~ 72 (192)
..++|+++|++|+|||||+++|.+..+.....++.+. ....+... .+.+|||||. +.++..+..
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~-~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 82 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTR-KPNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKDEIVR 82 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceee-CceEEeec----ceEEEeCCccccccccCHHHHHHHHHHHHH
Confidence 4689999999999999999999988765544443322 22222222 5899999993 344443333
Q ss_pred cC----CCCCEEEEEEECCChhhhhc---------hhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCC
Q psy4710 73 SY----PDTDVILMCFSIDSPDSLEN---------IPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPV 139 (192)
Q Consensus 73 ~~----~~~~~~i~v~d~~~~~~~~~---------~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~ 139 (192)
++ ..++++++|+|..+...+.. ....+...+.. .+.|+++|+||+|+....
T Consensus 83 ~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~p~iiv~NK~Dl~~~~-------------- 146 (201)
T PRK04213 83 YIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE--LGIPPIVAVNKMDKIKNR-------------- 146 (201)
T ss_pred HHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH--cCCCeEEEEECccccCcH--------------
Confidence 33 34678888888765322210 00112333333 379999999999986521
Q ss_pred CHHHHHHHHHHcCC--------ceEEEeccCCcCCHHHHHHHHHHHHhhhcc
Q psy4710 140 KPEEGRAMAQKINA--------FAYLECSAKSKEGVREVFETATRAALQVKK 183 (192)
Q Consensus 140 ~~~~~~~~~~~~~~--------~~~~~~Sa~~~~gi~~~~~~i~~~~~~~~~ 183 (192)
.+...++.+.++. .+++++||++| |+++++++|.+.+...++
T Consensus 147 -~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~~~~ 196 (201)
T PRK04213 147 -DEVLDEIAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHEAKR 196 (201)
T ss_pred -HHHHHHHHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcCccc
Confidence 2233344444432 25899999999 999999999998765443
No 142
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.92 E-value=1.2e-24 Score=152.11 Aligned_cols=153 Identities=23% Similarity=0.229 Sum_probs=104.2
Q ss_pred ceeEEEEcCCCCchhHHHHHHhhCCCCCcccCcee-eeeeEEEEECCeEEEEEEEeCCCCCcc---------cccccccC
Q psy4710 5 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVF-ENYVADIEVDSKQVELALWDTAGQEDY---------DRLRPLSY 74 (192)
Q Consensus 5 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~---------~~~~~~~~ 74 (192)
.++|+++|++|||||||++++++..+.....+..+ ......+.+.+ ...+.+|||||.... ...+ ..+
T Consensus 41 ~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~i~Dt~G~~~~~~~~~~~~~~~~~-~~~ 118 (204)
T cd01878 41 IPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPD-GREVLLTDTVGFIRDLPHQLVEAFRSTL-EEV 118 (204)
T ss_pred CCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecC-CceEEEeCCCccccCCCHHHHHHHHHHH-HHH
Confidence 47999999999999999999999864332222211 22222333333 237999999997332 1111 125
Q ss_pred CCCCEEEEEEECCChhhhhchhhhhHHHHhhhC-CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCC
Q psy4710 75 PDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINA 153 (192)
Q Consensus 75 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (192)
..+|++++|+|++++.+.... ..|...+.... .+.|+++|+||+|+.+.... . ...... .
T Consensus 119 ~~~d~ii~v~D~~~~~~~~~~-~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~---------------~--~~~~~~-~ 179 (204)
T cd01878 119 AEADLLLHVVDASDPDYEEQI-ETVEKVLKELGAEDIPMILVLNKIDLLDDEEL---------------E--ERLEAG-R 179 (204)
T ss_pred hcCCeEEEEEECCCCChhhHH-HHHHHHHHHcCcCCCCEEEEEEccccCChHHH---------------H--HHhhcC-C
Confidence 689999999999988766665 35556555432 36899999999998663210 0 222222 3
Q ss_pred ceEEEeccCCcCCHHHHHHHHHHHH
Q psy4710 154 FAYLECSAKSKEGVREVFETATRAA 178 (192)
Q Consensus 154 ~~~~~~Sa~~~~gi~~~~~~i~~~~ 178 (192)
.+++++||+++.|+++++++|.+++
T Consensus 180 ~~~~~~Sa~~~~gi~~l~~~L~~~~ 204 (204)
T cd01878 180 PDAVFISAKTGEGLDELLEAIEELL 204 (204)
T ss_pred CceEEEEcCCCCCHHHHHHHHHhhC
Confidence 5899999999999999999998753
No 143
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.92 E-value=4.6e-24 Score=141.85 Aligned_cols=154 Identities=40% Similarity=0.604 Sum_probs=113.8
Q ss_pred EEcCCCCchhHHHHHHhhCCC-CCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEEEECCC
Q psy4710 10 IVGDGACGKTCLLIVFSKDQF-PEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDS 88 (192)
Q Consensus 10 v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~ 88 (192)
++|++|+|||||++++.+... .....++.................+.+||+||+..+...+...++.+|++++|+|+++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~ 80 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVTD 80 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccchhheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECcC
Confidence 589999999999999999877 4444444433334455556678899999999998887777778899999999999999
Q ss_pred hhhhhchhhhh-HHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccCCcCCH
Q psy4710 89 PDSLENIPEKW-TPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGV 167 (192)
Q Consensus 89 ~~~~~~~~~~~-~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 167 (192)
+.+.......+ .........+.|+++++||+|+...... ...............+++++|+.++.|+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~------------~~~~~~~~~~~~~~~~~~~~s~~~~~~i 148 (157)
T cd00882 81 RESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVV------------SEEELAEQLAKELGVPYFETSAKTGENV 148 (157)
T ss_pred HHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccch------------HHHHHHHHHHhhcCCcEEEEecCCCCCh
Confidence 98887775331 2333334458999999999998764221 1111122223333479999999999999
Q ss_pred HHHHHHHH
Q psy4710 168 REVFETAT 175 (192)
Q Consensus 168 ~~~~~~i~ 175 (192)
++++++|.
T Consensus 149 ~~~~~~l~ 156 (157)
T cd00882 149 EELFEELA 156 (157)
T ss_pred HHHHHHHh
Confidence 99999975
No 144
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.92 E-value=2.8e-24 Score=158.95 Aligned_cols=157 Identities=22% Similarity=0.218 Sum_probs=107.2
Q ss_pred eeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeee-EEEEECCeEEEEEEEeCCCCCcccc----ccc---ccCCCC
Q psy4710 6 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYV-ADIEVDSKQVELALWDTAGQEDYDR----LRP---LSYPDT 77 (192)
Q Consensus 6 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~D~~g~~~~~~----~~~---~~~~~~ 77 (192)
-.|+++|.+|||||||++++.+........+.++.... -.+.+. ....+.+||+||.....+ ... ..++.+
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~-~~~~~~i~D~PGli~~a~~~~gLg~~flrhiera 236 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVD-DGRSFVIADIPGLIEGASEGAGLGHRFLKHIERT 236 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeC-CceEEEEEeCCCcccCCcccccHHHHHHHHHHhh
Confidence 46899999999999999999987644332333322222 122232 236789999999743221 222 234569
Q ss_pred CEEEEEEECCCh---hhhhchhhhhHHHHhhhC---CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHc
Q psy4710 78 DVILMCFSIDSP---DSLENIPEKWTPEVKHFC---PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKI 151 (192)
Q Consensus 78 ~~~i~v~d~~~~---~~~~~~~~~~~~~~~~~~---~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (192)
+++++|+|+++. +.++.+ +.|...+..+. .+.|++||+||+|+..... ..+..+.+.+.+
T Consensus 237 d~ll~VvD~s~~~~~~~~e~l-~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~-------------~~~~~~~l~~~~ 302 (329)
T TIGR02729 237 RVLLHLIDISPLDGRDPIEDY-EIIRNELKKYSPELAEKPRIVVLNKIDLLDEEE-------------LAELLKELKKAL 302 (329)
T ss_pred CEEEEEEcCccccccCHHHHH-HHHHHHHHHhhhhhccCCEEEEEeCccCCChHH-------------HHHHHHHHHHHc
Confidence 999999999976 455555 35666665443 4789999999999865311 123334455555
Q ss_pred CCceEEEeccCCcCCHHHHHHHHHHHH
Q psy4710 152 NAFAYLECSAKSKEGVREVFETATRAA 178 (192)
Q Consensus 152 ~~~~~~~~Sa~~~~gi~~~~~~i~~~~ 178 (192)
+ .+++++||++++|++++++++.+.+
T Consensus 303 ~-~~vi~iSAktg~GI~eL~~~I~~~l 328 (329)
T TIGR02729 303 G-KPVFPISALTGEGLDELLYALAELL 328 (329)
T ss_pred C-CcEEEEEccCCcCHHHHHHHHHHHh
Confidence 5 5899999999999999999998754
No 145
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.92 E-value=5.7e-24 Score=143.79 Aligned_cols=159 Identities=20% Similarity=0.147 Sum_probs=106.6
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCccccc--------ccccCC
Q psy4710 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRL--------RPLSYP 75 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~--------~~~~~~ 75 (192)
...+|+++|++|+|||||++++.+...........................+.+|||||....... ....+.
T Consensus 2 ~~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 81 (168)
T cd04163 2 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALK 81 (168)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHH
Confidence 357899999999999999999998765332222222222222223344568999999997543322 223467
Q ss_pred CCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCce
Q psy4710 76 DTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFA 155 (192)
Q Consensus 76 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (192)
.+|++++|+|++++ +......+...+... +.|+++++||+|+..... ...+....+....+..+
T Consensus 82 ~~d~i~~v~d~~~~--~~~~~~~~~~~~~~~--~~~~iiv~nK~Dl~~~~~------------~~~~~~~~~~~~~~~~~ 145 (168)
T cd04163 82 DVDLVLFVVDASEP--IGEGDEFILELLKKS--KTPVILVLNKIDLVKDKE------------DLLPLLEKLKELGPFAE 145 (168)
T ss_pred hCCEEEEEEECCCc--cCchHHHHHHHHHHh--CCCEEEEEEchhccccHH------------HHHHHHHHHHhccCCCc
Confidence 89999999999987 233333444555443 689999999999874211 11222334444444468
Q ss_pred EEEeccCCcCCHHHHHHHHHHHH
Q psy4710 156 YLECSAKSKEGVREVFETATRAA 178 (192)
Q Consensus 156 ~~~~Sa~~~~gi~~~~~~i~~~~ 178 (192)
++++|++++.|++++++.|.+.+
T Consensus 146 ~~~~s~~~~~~~~~l~~~l~~~~ 168 (168)
T cd04163 146 IFPISALKGENVDELLEEIVKYL 168 (168)
T ss_pred eEEEEeccCCChHHHHHHHHhhC
Confidence 99999999999999999997653
No 146
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.92 E-value=1e-24 Score=169.15 Aligned_cols=163 Identities=18% Similarity=0.150 Sum_probs=107.8
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCCCC-cccCcee-eeeeEEEEECCeEEEEEEEeCCCCCcc----------cccc-
Q psy4710 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPE-VYVPTVF-ENYVADIEVDSKQVELALWDTAGQEDY----------DRLR- 70 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~----------~~~~- 70 (192)
..++|+++|.+|+|||||+++|++..... ...++++ +.....+..++ ..+.+|||||.... ....
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~--~~~~l~DTaG~~~~~~~~~~~e~~~~~~~ 287 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGG--KTWRFVDTAGLRRRVKQASGHEYYASLRT 287 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECC--EEEEEEECCCccccccccchHHHHHHHHH
Confidence 46899999999999999999999886532 2222322 22233344444 45689999995321 1111
Q ss_pred cccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHH
Q psy4710 71 PLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQK 150 (192)
Q Consensus 71 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (192)
...++.+|++++|+|++++.+.+.. .++..+.. .+.|+++|+||+|+...... .....+.......
T Consensus 288 ~~~i~~ad~vilV~Da~~~~s~~~~--~~~~~~~~--~~~piIiV~NK~Dl~~~~~~----------~~~~~~i~~~l~~ 353 (472)
T PRK03003 288 HAAIEAAEVAVVLIDASEPISEQDQ--RVLSMVIE--AGRALVLAFNKWDLVDEDRR----------YYLEREIDRELAQ 353 (472)
T ss_pred HHHHhcCCEEEEEEeCCCCCCHHHH--HHHHHHHH--cCCCEEEEEECcccCChhHH----------HHHHHHHHHhccc
Confidence 2346789999999999998766665 34444443 37999999999999652110 0001111111112
Q ss_pred cCCceEEEeccCCcCCHHHHHHHHHHHHhhhc
Q psy4710 151 INAFAYLECSAKSKEGVREVFETATRAALQVK 182 (192)
Q Consensus 151 ~~~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~~ 182 (192)
....+++++||++|.|++++|+.+.+.+....
T Consensus 354 ~~~~~~~~~SAk~g~gv~~lf~~i~~~~~~~~ 385 (472)
T PRK03003 354 VPWAPRVNISAKTGRAVDKLVPALETALESWD 385 (472)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHHhc
Confidence 22358999999999999999999988776543
No 147
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.92 E-value=2.6e-24 Score=144.24 Aligned_cols=147 Identities=21% Similarity=0.200 Sum_probs=99.3
Q ss_pred EEEcCCCCchhHHHHHHhhCCCC--CcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccc--------cccccCCCCC
Q psy4710 9 VIVGDGACGKTCLLIVFSKDQFP--EVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDR--------LRPLSYPDTD 78 (192)
Q Consensus 9 ~v~G~~~~GKSsli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~--------~~~~~~~~~~ 78 (192)
+++|.+|+|||||+++|.+.... ....+++.......... .+..+.+|||||+..+.. .+...++.+|
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d 78 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEW--GGREFILIDTGGIEPDDEGISKEIREQAELAIEEAD 78 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEE--CCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCC
Confidence 47999999999999999987532 22222222222222233 346799999999877544 2334567899
Q ss_pred EEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEE
Q psy4710 79 VILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLE 158 (192)
Q Consensus 79 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (192)
++++|+|..++.+.... .+...+... +.|+++|+||+|+...... .......+..++++
T Consensus 79 ~ii~v~d~~~~~~~~~~--~~~~~~~~~--~~piiiv~nK~D~~~~~~~-----------------~~~~~~~~~~~~~~ 137 (157)
T cd01894 79 VILFVVDGREGLTPADE--EIAKYLRKS--KKPVILVVNKVDNIKEEDE-----------------AAEFYSLGFGEPIP 137 (157)
T ss_pred EEEEEEeccccCCccHH--HHHHHHHhc--CCCEEEEEECcccCChHHH-----------------HHHHHhcCCCCeEE
Confidence 99999999875433322 344444443 6999999999998763210 11222344337899
Q ss_pred eccCCcCCHHHHHHHHHHHH
Q psy4710 159 CSAKSKEGVREVFETATRAA 178 (192)
Q Consensus 159 ~Sa~~~~gi~~~~~~i~~~~ 178 (192)
+|++++.|++++++++.+.+
T Consensus 138 ~Sa~~~~gv~~l~~~l~~~~ 157 (157)
T cd01894 138 ISAEHGRGIGDLLDAILELL 157 (157)
T ss_pred EecccCCCHHHHHHHHHhhC
Confidence 99999999999999998753
No 148
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.92 E-value=6.5e-24 Score=142.27 Aligned_cols=146 Identities=25% Similarity=0.287 Sum_probs=100.5
Q ss_pred eeEEEEcCCCCchhHHHHHHhhCCCCCcc-cCceeeeeeEEEEECCeEEEEEEEeCCCCCccccc--------ccccCCC
Q psy4710 6 KKLVIVGDGACGKTCLLIVFSKDQFPEVY-VPTVFENYVADIEVDSKQVELALWDTAGQEDYDRL--------RPLSYPD 76 (192)
Q Consensus 6 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~--------~~~~~~~ 76 (192)
++|+++|++|+|||||++++.+....... .++.+... ....+...+..+.+|||||...+... ....+..
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~ 80 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDV-IEESIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREAIEE 80 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccce-EEEEEEeCCEEEEEEECCCcCCCcchHHHHHHHHHHHHHhh
Confidence 58999999999999999999987643221 22222111 11122233567899999997655322 1235668
Q ss_pred CCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceE
Q psy4710 77 TDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAY 156 (192)
Q Consensus 77 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (192)
+|++++|+|++++.+..... .+.. ..+.|+++|+||+|+...... ..... ..++
T Consensus 81 ~~~~v~v~d~~~~~~~~~~~-~~~~-----~~~~~vi~v~nK~D~~~~~~~-------------------~~~~~-~~~~ 134 (157)
T cd04164 81 ADLVLFVIDASRGLDEEDLE-ILEL-----PADKPIIVVLNKSDLLPDSEL-------------------LSLLA-GKPI 134 (157)
T ss_pred CCEEEEEEECCCCCCHHHHH-HHHh-----hcCCCEEEEEEchhcCCcccc-------------------ccccC-CCce
Confidence 99999999999865554442 2221 347999999999999763211 12222 3589
Q ss_pred EEeccCCcCCHHHHHHHHHHHH
Q psy4710 157 LECSAKSKEGVREVFETATRAA 178 (192)
Q Consensus 157 ~~~Sa~~~~gi~~~~~~i~~~~ 178 (192)
+++||+++.|+++++++|...+
T Consensus 135 ~~~Sa~~~~~v~~l~~~l~~~~ 156 (157)
T cd04164 135 IAISAKTGEGLDELKEALLELA 156 (157)
T ss_pred EEEECCCCCCHHHHHHHHHHhh
Confidence 9999999999999999988754
No 149
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.92 E-value=1.5e-23 Score=140.77 Aligned_cols=147 Identities=16% Similarity=0.193 Sum_probs=102.2
Q ss_pred EEcCCCCchhHHHHHHhhCCCCCcccCceee-eeeEEEEECCeEEEEEEEeCCCCCccccc------ccccC--CCCCEE
Q psy4710 10 IVGDGACGKTCLLIVFSKDQFPEVYVPTVFE-NYVADIEVDSKQVELALWDTAGQEDYDRL------RPLSY--PDTDVI 80 (192)
Q Consensus 10 v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~D~~g~~~~~~~------~~~~~--~~~~~~ 80 (192)
++|++|+|||||++++.+........++.+. .....+..+ +..+.+|||||+..+... +..++ +.+|++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v 78 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLG--GKEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI 78 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeC--CeEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence 5899999999999999987644333333222 223334444 357899999998776542 33344 489999
Q ss_pred EEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEec
Q psy4710 81 LMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECS 160 (192)
Q Consensus 81 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 160 (192)
++|+|+.+++... .+...+... +.|+++++||+|+.... ... .....+...++ .+++++|
T Consensus 79 i~v~d~~~~~~~~----~~~~~~~~~--~~~~iiv~NK~Dl~~~~------------~~~-~~~~~~~~~~~-~~~~~iS 138 (158)
T cd01879 79 VNVVDATNLERNL----YLTLQLLEL--GLPVVVALNMIDEAEKR------------GIK-IDLDKLSELLG-VPVVPTS 138 (158)
T ss_pred EEEeeCCcchhHH----HHHHHHHHc--CCCEEEEEehhhhcccc------------cch-hhHHHHHHhhC-CCeEEEE
Confidence 9999998864322 333333333 79999999999996532 111 22345555555 5899999
Q ss_pred cCCcCCHHHHHHHHHHHH
Q psy4710 161 AKSKEGVREVFETATRAA 178 (192)
Q Consensus 161 a~~~~gi~~~~~~i~~~~ 178 (192)
|.++.|++++++++.+.+
T Consensus 139 a~~~~~~~~l~~~l~~~~ 156 (158)
T cd01879 139 ARKGEGIDELKDAIAELA 156 (158)
T ss_pred ccCCCCHHHHHHHHHHHh
Confidence 999999999999998764
No 150
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.92 E-value=1e-24 Score=143.60 Aligned_cols=148 Identities=16% Similarity=0.225 Sum_probs=97.7
Q ss_pred eeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccc------ccc--CCCC
Q psy4710 6 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLR------PLS--YPDT 77 (192)
Q Consensus 6 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~------~~~--~~~~ 77 (192)
++|+++|.||+|||||+|+|++........|..+.. .....+...+..+.++|+||-.+..... ..+ ....
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~-~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~ 79 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVE-KKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLLSEKP 79 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSE-EEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCee-eeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHhhcCC
Confidence 589999999999999999999988554333333322 2222223233689999999954433221 122 2579
Q ss_pred CEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEE
Q psy4710 78 DVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYL 157 (192)
Q Consensus 78 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (192)
|++++|+|+++.+. ++ ++...+... +.|+++++||+|..... . .......+.+.++ +|++
T Consensus 80 D~ii~VvDa~~l~r--~l--~l~~ql~e~--g~P~vvvlN~~D~a~~~------------g-~~id~~~Ls~~Lg-~pvi 139 (156)
T PF02421_consen 80 DLIIVVVDATNLER--NL--YLTLQLLEL--GIPVVVVLNKMDEAERK------------G-IEIDAEKLSERLG-VPVI 139 (156)
T ss_dssp SEEEEEEEGGGHHH--HH--HHHHHHHHT--TSSEEEEEETHHHHHHT------------T-EEE-HHHHHHHHT-S-EE
T ss_pred CEEEEECCCCCHHH--HH--HHHHHHHHc--CCCEEEEEeCHHHHHHc------------C-CEECHHHHHHHhC-CCEE
Confidence 99999999987432 11 344444444 89999999999997632 1 1223556777777 5999
Q ss_pred EeccCCcCCHHHHHHHH
Q psy4710 158 ECSAKSKEGVREVFETA 174 (192)
Q Consensus 158 ~~Sa~~~~gi~~~~~~i 174 (192)
++||++++|++++++.|
T Consensus 140 ~~sa~~~~g~~~L~~~I 156 (156)
T PF02421_consen 140 PVSARTGEGIDELKDAI 156 (156)
T ss_dssp EEBTTTTBTHHHHHHHH
T ss_pred EEEeCCCcCHHHHHhhC
Confidence 99999999999999875
No 151
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.92 E-value=2.3e-24 Score=138.19 Aligned_cols=114 Identities=33% Similarity=0.603 Sum_probs=88.1
Q ss_pred eEEEEcCCCCchhHHHHHHhhCCCCC--cccCcee-eeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEE
Q psy4710 7 KLVIVGDGACGKTCLLIVFSKDQFPE--VYVPTVF-ENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMC 83 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v 83 (192)
||+|+|++|||||||+++|.+..... ...+... +..............+.+||++|++.+...+...+..+|++++|
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv 80 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV 80 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence 79999999999999999999988761 1111222 22233445667777799999999988888777778999999999
Q ss_pred EECCChhhhhchhhh--hHHHHhhhCCCCcEEEEeeccc
Q psy4710 84 FSIDSPDSLENIPEK--WTPEVKHFCPNVPIILVGNKKD 120 (192)
Q Consensus 84 ~d~~~~~~~~~~~~~--~~~~~~~~~~~~p~ivv~nK~D 120 (192)
||++++++++.+.+. |+..+....++.|+++|+||.|
T Consensus 81 ~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 81 YDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp EECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred EcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 999999999987543 6777777677899999999998
No 152
>PRK00089 era GTPase Era; Reviewed
Probab=99.92 E-value=7.1e-24 Score=155.74 Aligned_cols=164 Identities=21% Similarity=0.204 Sum_probs=110.8
Q ss_pred CcccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccc--------ccc
Q psy4710 1 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDR--------LRP 71 (192)
Q Consensus 1 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~--------~~~ 71 (192)
|+.+.-.|+++|++|||||||+|+|++.........+.++.. ...+. ..+...+.+|||||...... ...
T Consensus 1 ~~~~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~-~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~ 79 (292)
T PRK00089 1 MGFKSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIV-TEDDAQIIFVDTPGIHKPKRALNRAMNKAAW 79 (292)
T ss_pred CCceeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEE-EcCCceEEEEECCCCCCchhHHHHHHHHHHH
Confidence 345667899999999999999999999876544322222222 22222 22347899999999644321 222
Q ss_pred ccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHc
Q psy4710 72 LSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKI 151 (192)
Q Consensus 72 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (192)
..+..+|++++|+|+++. +......+...+... +.|+++|+||+|+..... ........+.+..
T Consensus 80 ~~~~~~D~il~vvd~~~~--~~~~~~~i~~~l~~~--~~pvilVlNKiDl~~~~~------------~l~~~~~~l~~~~ 143 (292)
T PRK00089 80 SSLKDVDLVLFVVDADEK--IGPGDEFILEKLKKV--KTPVILVLNKIDLVKDKE------------ELLPLLEELSELM 143 (292)
T ss_pred HHHhcCCEEEEEEeCCCC--CChhHHHHHHHHhhc--CCCEEEEEECCcCCCCHH------------HHHHHHHHHHhhC
Confidence 356789999999999883 333333444444432 689999999999974211 1122333444444
Q ss_pred CCceEEEeccCCcCCHHHHHHHHHHHHhhh
Q psy4710 152 NAFAYLECSAKSKEGVREVFETATRAALQV 181 (192)
Q Consensus 152 ~~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~ 181 (192)
+..+++++||+++.|++++++++.+.+...
T Consensus 144 ~~~~i~~iSA~~~~gv~~L~~~L~~~l~~~ 173 (292)
T PRK00089 144 DFAEIVPISALKGDNVDELLDVIAKYLPEG 173 (292)
T ss_pred CCCeEEEecCCCCCCHHHHHHHHHHhCCCC
Confidence 556899999999999999999999887653
No 153
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.91 E-value=4.2e-24 Score=164.78 Aligned_cols=160 Identities=18% Similarity=0.197 Sum_probs=107.1
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCcee--eeeeEEEEECCeEEEEEEEeCCCCCcccccc-----------
Q psy4710 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVF--ENYVADIEVDSKQVELALWDTAGQEDYDRLR----------- 70 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~----------- 70 (192)
..++|+++|.+|+|||||+++|++...........+ +.....+..+ +..+.+|||||...+....
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~--~~~~~liDT~G~~~~~~~~~~~e~~~~~~~ 248 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERN--GKKYLLIDTAGIRRKGKVTEGVEKYSVLRT 248 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEEC--CcEEEEEECCCccccccchhhHHHHHHHHH
Confidence 358999999999999999999998764322222222 2222233333 3478999999976654332
Q ss_pred cccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHH
Q psy4710 71 PLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQK 150 (192)
Q Consensus 71 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (192)
...++.+|++++|+|++++.+.+.. .+...+... +.|+++|+||+|+...... .......+...
T Consensus 249 ~~~~~~ad~~ilV~D~~~~~~~~~~--~~~~~~~~~--~~~iiiv~NK~Dl~~~~~~------------~~~~~~~~~~~ 312 (429)
T TIGR03594 249 LKAIERADVVLLVLDATEGITEQDL--RIAGLILEA--GKALVIVVNKWDLVKDEKT------------REEFKKELRRK 312 (429)
T ss_pred HHHHHhCCEEEEEEECCCCccHHHH--HHHHHHHHc--CCcEEEEEECcccCCCHHH------------HHHHHHHHHHh
Confidence 2356789999999999987555443 344444443 7999999999998721110 00111112222
Q ss_pred ---cCCceEEEeccCCcCCHHHHHHHHHHHHhhh
Q psy4710 151 ---INAFAYLECSAKSKEGVREVFETATRAALQV 181 (192)
Q Consensus 151 ---~~~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~ 181 (192)
.+..+++++||++|.|++++|+++.+.+...
T Consensus 313 ~~~~~~~~vi~~SA~~g~~v~~l~~~i~~~~~~~ 346 (429)
T TIGR03594 313 LPFLDFAPIVFISALTGQGVDKLLDAIDEVYENA 346 (429)
T ss_pred cccCCCCceEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 2336899999999999999999998876544
No 154
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.91 E-value=3.5e-24 Score=147.88 Aligned_cols=159 Identities=17% Similarity=0.072 Sum_probs=108.8
Q ss_pred eEEEEcCCCCchhHHHHHHhhCCCCCcccCcee---------------eeeeEEEEECCeEEEEEEEeCCCCCccccccc
Q psy4710 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVF---------------ENYVADIEVDSKQVELALWDTAGQEDYDRLRP 71 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~ 71 (192)
+|+++|.+|+|||||+++|.+............ +..............+.+||+||+..+...+.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~ 80 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI 80 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence 589999999999999999998876554322110 11111112233356899999999988888888
Q ss_pred ccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHH-
Q psy4710 72 LSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQK- 150 (192)
Q Consensus 72 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 150 (192)
..++.+|++++|+|+.++..... ..++..+.. .+.|+++++||+|+......... .....+..+.
T Consensus 81 ~~~~~~d~~i~v~d~~~~~~~~~--~~~~~~~~~--~~~~i~iv~nK~D~~~~~~~~~~----------~~~~~~~~~~~ 146 (189)
T cd00881 81 RGLSVSDGAILVVDANEGVQPQT--REHLRIARE--GGLPIIVAINKIDRVGEEDLEEV----------LREIKELLGLI 146 (189)
T ss_pred HHHHhcCEEEEEEECCCCCcHHH--HHHHHHHHH--CCCCeEEEEECCCCcchhcHHHH----------HHHHHHHHccc
Confidence 88889999999999987643332 233444443 38999999999999763221111 1111122211
Q ss_pred ------------cCCceEEEeccCCcCCHHHHHHHHHHHHh
Q psy4710 151 ------------INAFAYLECSAKSKEGVREVFETATRAAL 179 (192)
Q Consensus 151 ------------~~~~~~~~~Sa~~~~gi~~~~~~i~~~~~ 179 (192)
....+++++||+++.|++++++++.+.+.
T Consensus 147 ~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~ 187 (189)
T cd00881 147 GFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHLP 187 (189)
T ss_pred cccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhCC
Confidence 12368999999999999999999988763
No 155
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.91 E-value=3.1e-24 Score=166.54 Aligned_cols=154 Identities=16% Similarity=0.160 Sum_probs=104.6
Q ss_pred eeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCc--------ccccccccCCCC
Q psy4710 6 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQED--------YDRLRPLSYPDT 77 (192)
Q Consensus 6 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~--------~~~~~~~~~~~~ 77 (192)
.+|+|+|.+|+|||||+|+|++..........+.+...........+..+.+|||||.+. +...+...++.+
T Consensus 39 ~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~a 118 (472)
T PRK03003 39 PVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVAMRTA 118 (472)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHHHHHHhC
Confidence 689999999999999999999876543222222222222222222345689999999763 222344567889
Q ss_pred CEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEE
Q psy4710 78 DVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYL 157 (192)
Q Consensus 78 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (192)
|++|+|+|++++.+... ..+...++.. +.|+++|+||+|+.... .+....+...++ ..+
T Consensus 119 D~il~VvD~~~~~s~~~--~~i~~~l~~~--~~piilV~NK~Dl~~~~---------------~~~~~~~~~g~~--~~~ 177 (472)
T PRK03003 119 DAVLFVVDATVGATATD--EAVARVLRRS--GKPVILAANKVDDERGE---------------ADAAALWSLGLG--EPH 177 (472)
T ss_pred CEEEEEEECCCCCCHHH--HHHHHHHHHc--CCCEEEEEECccCCccc---------------hhhHHHHhcCCC--CeE
Confidence 99999999998754432 3566666543 79999999999985421 111112222222 346
Q ss_pred EeccCCcCCHHHHHHHHHHHHhh
Q psy4710 158 ECSAKSKEGVREVFETATRAALQ 180 (192)
Q Consensus 158 ~~Sa~~~~gi~~~~~~i~~~~~~ 180 (192)
++||++|.|++++|+++.+.+.+
T Consensus 178 ~iSA~~g~gi~eL~~~i~~~l~~ 200 (472)
T PRK03003 178 PVSALHGRGVGDLLDAVLAALPE 200 (472)
T ss_pred EEEcCCCCCcHHHHHHHHhhccc
Confidence 89999999999999999988865
No 156
>KOG4252|consensus
Probab=99.91 E-value=5.5e-26 Score=148.23 Aligned_cols=165 Identities=29% Similarity=0.445 Sum_probs=147.1
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy4710 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 82 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 82 (192)
.-+|++|+|..++||||++.+++++-|-..+..+++..+ .+++.+..+.+...+||++|+++|......+++++.+.++
T Consensus 19 ~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~vL 98 (246)
T KOG4252|consen 19 RAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQASVL 98 (246)
T ss_pred hhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccceEE
Confidence 468999999999999999999999999888887777555 5566677788889999999999999999999999999999
Q ss_pred EEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccC
Q psy4710 83 CFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAK 162 (192)
Q Consensus 83 v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 162 (192)
|++-+|..+|+... .|...+......+|.++|-||+|+.++ ..+...+...+++.++. -++.+|++
T Consensus 99 VFSTTDr~SFea~~-~w~~kv~~e~~~IPtV~vqNKIDlved------------s~~~~~evE~lak~l~~-RlyRtSvk 164 (246)
T KOG4252|consen 99 VFSTTDRYSFEATL-EWYNKVQKETERIPTVFVQNKIDLVED------------SQMDKGEVEGLAKKLHK-RLYRTSVK 164 (246)
T ss_pred EEecccHHHHHHHH-HHHHHHHHHhccCCeEEeeccchhhHh------------hhcchHHHHHHHHHhhh-hhhhhhhh
Confidence 99999999999985 799999988889999999999999884 56778888888888874 78999999
Q ss_pred CcCCHHHHHHHHHHHHhhhc
Q psy4710 163 SKEGVREVFETATRAALQVK 182 (192)
Q Consensus 163 ~~~gi~~~~~~i~~~~~~~~ 182 (192)
+..|+.++|..+..++....
T Consensus 165 ed~NV~~vF~YLaeK~~q~~ 184 (246)
T KOG4252|consen 165 EDFNVMHVFAYLAEKLTQQK 184 (246)
T ss_pred hhhhhHHHHHHHHHHHHHHH
Confidence 99999999999998876653
No 157
>COG1159 Era GTPase [General function prediction only]
Probab=99.91 E-value=6.8e-24 Score=150.05 Aligned_cols=164 Identities=18% Similarity=0.134 Sum_probs=119.9
Q ss_pred ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcc--------cccccccC
Q psy4710 3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY--------DRLRPLSY 74 (192)
Q Consensus 3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~--------~~~~~~~~ 74 (192)
.+.--|+++|.||+|||||+|++++.+....+....+++....--+..+...+.++||||...- .......+
T Consensus 4 ~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl 83 (298)
T COG1159 4 FKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARSAL 83 (298)
T ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHHHh
Confidence 4566799999999999999999999998877665555555333333444788999999994321 12223467
Q ss_pred CCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCc
Q psy4710 75 PDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAF 154 (192)
Q Consensus 75 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (192)
..+|+++||+|+.++ +....+..++.+++ .+.|+++++||+|...+.. ........+....+..
T Consensus 84 ~dvDlilfvvd~~~~--~~~~d~~il~~lk~--~~~pvil~iNKID~~~~~~------------~l~~~~~~~~~~~~f~ 147 (298)
T COG1159 84 KDVDLILFVVDADEG--WGPGDEFILEQLKK--TKTPVILVVNKIDKVKPKT------------VLLKLIAFLKKLLPFK 147 (298)
T ss_pred ccCcEEEEEEecccc--CCccHHHHHHHHhh--cCCCeEEEEEccccCCcHH------------HHHHHHHHHHhhCCcc
Confidence 789999999999875 44454566666665 3689999999999877422 1122333344445555
Q ss_pred eEEEeccCCcCCHHHHHHHHHHHHhhhc
Q psy4710 155 AYLECSAKSKEGVREVFETATRAALQVK 182 (192)
Q Consensus 155 ~~~~~Sa~~~~gi~~~~~~i~~~~~~~~ 182 (192)
.++++||+++.|++.+.+.+...+.+..
T Consensus 148 ~ivpiSA~~g~n~~~L~~~i~~~Lpeg~ 175 (298)
T COG1159 148 EIVPISALKGDNVDTLLEIIKEYLPEGP 175 (298)
T ss_pred eEEEeeccccCCHHHHHHHHHHhCCCCC
Confidence 7999999999999999999999887754
No 158
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.91 E-value=1.7e-23 Score=160.23 Aligned_cols=151 Identities=21% Similarity=0.246 Sum_probs=106.1
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCCCCc-ccCcee-eeeeEEEEECCeEEEEEEEeCCCCCcccccc--------ccc
Q psy4710 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEV-YVPTVF-ENYVADIEVDSKQVELALWDTAGQEDYDRLR--------PLS 73 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~--------~~~ 73 (192)
..++|+++|++|+|||||+|+|++...... ..++++ +.....+.++ +..+.+|||||...+...+ ...
T Consensus 202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~--g~~v~l~DTaG~~~~~~~ie~~gi~~~~~~ 279 (442)
T TIGR00450 202 DGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELN--GILIKLLDTAGIREHADFVERLGIEKSFKA 279 (442)
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEEC--CEEEEEeeCCCcccchhHHHHHHHHHHHHH
Confidence 468999999999999999999998754322 122222 2223333443 4678999999986654322 346
Q ss_pred CCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCC
Q psy4710 74 YPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINA 153 (192)
Q Consensus 74 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (192)
++.+|++++|+|++++.+.+.. |+..+.. .+.|+++|+||+|+... ....+.+.++
T Consensus 280 ~~~aD~il~V~D~s~~~s~~~~---~l~~~~~--~~~piIlV~NK~Dl~~~------------------~~~~~~~~~~- 335 (442)
T TIGR00450 280 IKQADLVIYVLDASQPLTKDDF---LIIDLNK--SKKPFILVLNKIDLKIN------------------SLEFFVSSKV- 335 (442)
T ss_pred HhhCCEEEEEEECCCCCChhHH---HHHHHhh--CCCCEEEEEECccCCCc------------------chhhhhhhcC-
Confidence 7889999999999987665543 5554443 37899999999998542 0122334444
Q ss_pred ceEEEeccCCcCCHHHHHHHHHHHHhhh
Q psy4710 154 FAYLECSAKSKEGVREVFETATRAALQV 181 (192)
Q Consensus 154 ~~~~~~Sa~~~~gi~~~~~~i~~~~~~~ 181 (192)
.+++.+||++ .|++++++.+.+.+.+.
T Consensus 336 ~~~~~vSak~-~gI~~~~~~L~~~i~~~ 362 (442)
T TIGR00450 336 LNSSNLSAKQ-LKIKALVDLLTQKINAF 362 (442)
T ss_pred CceEEEEEec-CCHHHHHHHHHHHHHHH
Confidence 4789999998 69999999988887654
No 159
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.91 E-value=2.9e-23 Score=141.28 Aligned_cols=156 Identities=18% Similarity=0.211 Sum_probs=100.6
Q ss_pred ceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee--eEEEEECCeEEEEEEEeCCCCCccccc-----------cc
Q psy4710 5 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY--VADIEVDSKQVELALWDTAGQEDYDRL-----------RP 71 (192)
Q Consensus 5 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~D~~g~~~~~~~-----------~~ 71 (192)
+++|+++|++|+|||||++++++.........+.++.. ...+..+ +..+.+||+||....... ..
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~ 79 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYD--GKKYTLIDTAGIRRKGKVEEGIEKYSVLRTL 79 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEEC--CeeEEEEECCCCccccchhccHHHHHHHHHH
Confidence 68999999999999999999998764322221111111 1222333 345789999997543211 11
Q ss_pred ccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHc
Q psy4710 72 LSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKI 151 (192)
Q Consensus 72 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (192)
..+..+|++++|+|+.++.+.... .+...... .+.|+++++||+|+...... ........+.+.+
T Consensus 80 ~~~~~~d~vi~v~d~~~~~~~~~~--~~~~~~~~--~~~~~iiv~nK~Dl~~~~~~-----------~~~~~~~~~~~~~ 144 (174)
T cd01895 80 KAIERADVVLLVIDATEGITEQDL--RIAGLILE--EGKALVIVVNKWDLVEKDSK-----------TMKEFKKEIRRKL 144 (174)
T ss_pred HHHhhcCeEEEEEeCCCCcchhHH--HHHHHHHh--cCCCEEEEEeccccCCccHH-----------HHHHHHHHHHhhc
Confidence 245689999999999987654433 23333332 27899999999998763210 0011112222222
Q ss_pred ---CCceEEEeccCCcCCHHHHHHHHHHH
Q psy4710 152 ---NAFAYLECSAKSKEGVREVFETATRA 177 (192)
Q Consensus 152 ---~~~~~~~~Sa~~~~gi~~~~~~i~~~ 177 (192)
+..+++++||++++|++++++++.+.
T Consensus 145 ~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 145 PFLDYAPIVFISALTGQGVDKLFDAIDEV 173 (174)
T ss_pred ccccCCceEEEeccCCCCHHHHHHHHHHh
Confidence 23589999999999999999998764
No 160
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.91 E-value=9.8e-24 Score=157.32 Aligned_cols=151 Identities=21% Similarity=0.261 Sum_probs=103.2
Q ss_pred ceeEEEEcCCCCchhHHHHHHhhCCCCCcccCc-eeeeeeEEEEECCeEEEEEEEeCCCCCc---------ccccccccC
Q psy4710 5 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPT-VFENYVADIEVDSKQVELALWDTAGQED---------YDRLRPLSY 74 (192)
Q Consensus 5 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~D~~g~~~---------~~~~~~~~~ 74 (192)
-++|+++|.+|+|||||+|+|++........+. +.+.....+.+.+ +..+.+|||||..+ |...+ ..+
T Consensus 189 ~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~-~~~i~l~DT~G~~~~l~~~lie~f~~tl-e~~ 266 (351)
T TIGR03156 189 VPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPD-GGEVLLTDTVGFIRDLPHELVAAFRATL-EEV 266 (351)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCC-CceEEEEecCcccccCCHHHHHHHHHHH-HHH
Confidence 389999999999999999999997643322222 2222334444432 35799999999722 22221 236
Q ss_pred CCCCEEEEEEECCChhhhhchhhhhHHHHhhhC-CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCC
Q psy4710 75 PDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINA 153 (192)
Q Consensus 75 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (192)
.++|++++|+|++++.+.+.. ..|...+.... .+.|+++|+||+|+..... ...... ..
T Consensus 267 ~~ADlil~VvD~s~~~~~~~~-~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~~-----------------v~~~~~--~~ 326 (351)
T TIGR03156 267 READLLLHVVDASDPDREEQI-EAVEKVLEELGAEDIPQLLVYNKIDLLDEPR-----------------IERLEE--GY 326 (351)
T ss_pred HhCCEEEEEEECCCCchHHHH-HHHHHHHHHhccCCCCEEEEEEeecCCChHh-----------------HHHHHh--CC
Confidence 789999999999998766655 34555554432 3789999999999864210 011111 11
Q ss_pred ceEEEeccCCcCCHHHHHHHHHHH
Q psy4710 154 FAYLECSAKSKEGVREVFETATRA 177 (192)
Q Consensus 154 ~~~~~~Sa~~~~gi~~~~~~i~~~ 177 (192)
.+++++||+++.|+++++++|.+.
T Consensus 327 ~~~i~iSAktg~GI~eL~~~I~~~ 350 (351)
T TIGR03156 327 PEAVFVSAKTGEGLDLLLEAIAER 350 (351)
T ss_pred CCEEEEEccCCCCHHHHHHHHHhh
Confidence 368999999999999999998764
No 161
>KOG0071|consensus
Probab=99.91 E-value=1.3e-23 Score=131.71 Aligned_cols=163 Identities=21% Similarity=0.294 Sum_probs=125.4
Q ss_pred ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy4710 3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 82 (192)
Q Consensus 3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 82 (192)
..+++|+++|..++||||++.+|..+..... .|+.+-+.. ...+.++.+.+||.+|++..+..|.++++...++||
T Consensus 15 ~KE~~ilmlGLd~aGKTtiLyKLkl~~~~~~-ipTvGFnve---tVtykN~kfNvwdvGGqd~iRplWrhYy~gtqglIF 90 (180)
T KOG0071|consen 15 NKEMRILMLGLDAAGKTTILYKLKLGQSVTT-IPTVGFNVE---TVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF 90 (180)
T ss_pred cccceEEEEecccCCceehhhHHhcCCCccc-ccccceeEE---EEEeeeeEEeeeeccCchhhhHHHHhhccCCceEEE
Confidence 3689999999999999999999987765443 444443322 345678899999999999999999999999999999
Q ss_pred EEECCChhhhhchhhhhHHHHhhh-CCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEecc
Q psy4710 83 CFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSA 161 (192)
Q Consensus 83 v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 161 (192)
|+|..+.+.+++..+.+...+... ..+.|++|.+||.|+..+....+..+.+..+.. .-..+-+.++||
T Consensus 91 V~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~leLe~~----------r~~~W~vqp~~a 160 (180)
T KOG0071|consen 91 VVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKLELERI----------RDRNWYVQPSCA 160 (180)
T ss_pred EEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccCHHHHHHHhccccc----------cCCccEeecccc
Confidence 999999988998887777777653 357999999999999876443333222222111 111256788999
Q ss_pred CCcCCHHHHHHHHHHHHh
Q psy4710 162 KSKEGVREVFETATRAAL 179 (192)
Q Consensus 162 ~~~~gi~~~~~~i~~~~~ 179 (192)
.+++|+.+-|.|+...+.
T Consensus 161 ~~gdgL~eglswlsnn~~ 178 (180)
T KOG0071|consen 161 LSGDGLKEGLSWLSNNLK 178 (180)
T ss_pred ccchhHHHHHHHHHhhcc
Confidence 999999999999987653
No 162
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.91 E-value=1.1e-23 Score=146.07 Aligned_cols=148 Identities=18% Similarity=0.141 Sum_probs=98.1
Q ss_pred eeEEEEcCCCCchhHHHHHHhh--CCCCCccc------------Ccee-eeeeEEEEECCeEEEEEEEeCCCCCcccccc
Q psy4710 6 KKLVIVGDGACGKTCLLIVFSK--DQFPEVYV------------PTVF-ENYVADIEVDSKQVELALWDTAGQEDYDRLR 70 (192)
Q Consensus 6 ~~i~v~G~~~~GKSsli~~l~~--~~~~~~~~------------~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~ 70 (192)
.+|+++|++++|||||+++|+. +.+..... .+.+ +.......+......+.+|||||+++|...+
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 82 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV 82 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence 4899999999999999999997 44433220 0111 1112233445566789999999999999888
Q ss_pred cccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHH-
Q psy4710 71 PLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQ- 149 (192)
Q Consensus 71 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 149 (192)
..+++.+|++++|+|+++.. .... ..++..... .+.|+++++||+|+...... ....+..++..
T Consensus 83 ~~~~~~~d~~ilV~d~~~~~-~~~~-~~~~~~~~~--~~~p~iiv~NK~Dl~~~~~~-----------~~~~~~~~~~~~ 147 (194)
T cd01891 83 ERVLSMVDGVLLLVDASEGP-MPQT-RFVLKKALE--LGLKPIVVINKIDRPDARPE-----------EVVDEVFDLFIE 147 (194)
T ss_pred HHHHHhcCEEEEEEECCCCc-cHHH-HHHHHHHHH--cCCCEEEEEECCCCCCCCHH-----------HHHHHHHHHHHH
Confidence 88999999999999998742 1111 233333332 37899999999998652110 01122222221
Q ss_pred ------HcCCceEEEeccCCcCCHHH
Q psy4710 150 ------KINAFAYLECSAKSKEGVRE 169 (192)
Q Consensus 150 ------~~~~~~~~~~Sa~~~~gi~~ 169 (192)
..+ ++++++||++|.|+.+
T Consensus 148 ~~~~~~~~~-~~iv~~Sa~~g~~~~~ 172 (194)
T cd01891 148 LGATEEQLD-FPVLYASAKNGWASLN 172 (194)
T ss_pred hCCccccCc-cCEEEeehhccccccc
Confidence 123 5899999999977633
No 163
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.91 E-value=1.1e-22 Score=154.12 Aligned_cols=157 Identities=22% Similarity=0.220 Sum_probs=108.1
Q ss_pred eEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeE-EEEECCeEEEEEEEeCCCCCcccc----ccc---ccCCCCC
Q psy4710 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDSKQVELALWDTAGQEDYDR----LRP---LSYPDTD 78 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~D~~g~~~~~~----~~~---~~~~~~~ 78 (192)
.|+++|.||||||||++++++........+.++..... .+.+. ....+.+||+||.....+ +.. ..++.++
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~-~~~~~~laD~PGliega~~~~gLg~~fLrhier~~ 238 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETD-DGRSFVMADIPGLIEGASEGVGLGHQFLRHIERTR 238 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEe-CCceEEEEECCCCcccccccchHHHHHHHHHhhCC
Confidence 79999999999999999999876543323333322221 12222 145799999999643211 222 2345689
Q ss_pred EEEEEEECCCh---hhhhchhhhhHHHHhhhC---CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcC
Q psy4710 79 VILMCFSIDSP---DSLENIPEKWTPEVKHFC---PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKIN 152 (192)
Q Consensus 79 ~~i~v~d~~~~---~~~~~~~~~~~~~~~~~~---~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (192)
++++|+|+++. +.++.. +.|...+..+. .++|.+||+||+|+... .+....+.+.++
T Consensus 239 llI~VID~s~~~~~dp~e~~-~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~----------------~e~l~~l~~~l~ 301 (424)
T PRK12297 239 VIVHVIDMSGSEGRDPIEDY-EKINKELKLYNPRLLERPQIVVANKMDLPEA----------------EENLEEFKEKLG 301 (424)
T ss_pred EEEEEEeCCccccCChHHHH-HHHHHHHhhhchhccCCcEEEEEeCCCCcCC----------------HHHHHHHHHHhC
Confidence 99999999864 445555 35666666543 37899999999997331 123445565555
Q ss_pred CceEEEeccCCcCCHHHHHHHHHHHHhhhc
Q psy4710 153 AFAYLECSAKSKEGVREVFETATRAALQVK 182 (192)
Q Consensus 153 ~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~~ 182 (192)
.+++++||++++|+++++++|.+.+...+
T Consensus 302 -~~i~~iSA~tgeGI~eL~~~L~~~l~~~~ 330 (424)
T PRK12297 302 -PKVFPISALTGQGLDELLYAVAELLEETP 330 (424)
T ss_pred -CcEEEEeCCCCCCHHHHHHHHHHHHHhCc
Confidence 58999999999999999999988876543
No 164
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.91 E-value=5.4e-23 Score=137.85 Aligned_cols=142 Identities=17% Similarity=0.174 Sum_probs=97.5
Q ss_pred eEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccc----cccCCCCCEEEE
Q psy4710 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLR----PLSYPDTDVILM 82 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~----~~~~~~~~~~i~ 82 (192)
+|+++|++|+|||||++++.+..... .++. .+.+... .+|||||.......+ ...++.+|++++
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~~--~~~~------~v~~~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il~ 70 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTLA--RKTQ------AVEFNDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLIY 70 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCccC--ccce------EEEECCC----CcccCCccccCCHHHHHHHHHHHhcCCEEEE
Confidence 79999999999999999987654211 1111 1122222 269999973222111 223679999999
Q ss_pred EEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCC-ceEEEecc
Q psy4710 83 CFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINA-FAYLECSA 161 (192)
Q Consensus 83 v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa 161 (192)
|+|+++.+++.. .|+..+ ..+.|+++++||+|+... ..+...++....+. .|++++||
T Consensus 71 v~d~~~~~s~~~---~~~~~~---~~~~~ii~v~nK~Dl~~~---------------~~~~~~~~~~~~~~~~p~~~~Sa 129 (158)
T PRK15467 71 VHGANDPESRLP---AGLLDI---GVSKRQIAVISKTDMPDA---------------DVAATRKLLLETGFEEPIFELNS 129 (158)
T ss_pred EEeCCCcccccC---HHHHhc---cCCCCeEEEEEccccCcc---------------cHHHHHHHHHHcCCCCCEEEEEC
Confidence 999998765532 233322 236899999999998541 13344556556653 48999999
Q ss_pred CCcCCHHHHHHHHHHHHhhh
Q psy4710 162 KSKEGVREVFETATRAALQV 181 (192)
Q Consensus 162 ~~~~gi~~~~~~i~~~~~~~ 181 (192)
++++|++++|+.+.+.+.+.
T Consensus 130 ~~g~gi~~l~~~l~~~~~~~ 149 (158)
T PRK15467 130 HDPQSVQQLVDYLASLTKQE 149 (158)
T ss_pred CCccCHHHHHHHHHHhchhh
Confidence 99999999999998877554
No 165
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.90 E-value=1.9e-23 Score=160.65 Aligned_cols=148 Identities=24% Similarity=0.312 Sum_probs=104.8
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCCCC-cccCcee-eeeeEEEEECCeEEEEEEEeCCCCCccccc--------cccc
Q psy4710 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPE-VYVPTVF-ENYVADIEVDSKQVELALWDTAGQEDYDRL--------RPLS 73 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~--------~~~~ 73 (192)
..++|+++|.+|+|||||+|+|++..... ...+.++ +.....+.+ .+..+.+|||||...+... ....
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~--~g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~ 291 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINL--DGIPLRLIDTAGIRETDDEVEKIGIERSREA 291 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEE--CCeEEEEEeCCCCCCCccHHHHHHHHHHHHH
Confidence 35899999999999999999999876432 2222222 222333344 3467899999998654432 1235
Q ss_pred CCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCC
Q psy4710 74 YPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINA 153 (192)
Q Consensus 74 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (192)
++.+|++++|+|++++.+.+.. +.|.. ..+.|+++|+||+|+.+... .. ...+
T Consensus 292 ~~~aD~il~VvD~s~~~s~~~~-~~l~~-----~~~~piiiV~NK~DL~~~~~------------~~--------~~~~- 344 (449)
T PRK05291 292 IEEADLVLLVLDASEPLTEEDD-EILEE-----LKDKPVIVVLNKADLTGEID------------LE--------EENG- 344 (449)
T ss_pred HHhCCEEEEEecCCCCCChhHH-HHHHh-----cCCCCcEEEEEhhhccccch------------hh--------hccC-
Confidence 6789999999999988665543 23332 34799999999999965311 00 1222
Q ss_pred ceEEEeccCCcCCHHHHHHHHHHHHhh
Q psy4710 154 FAYLECSAKSKEGVREVFETATRAALQ 180 (192)
Q Consensus 154 ~~~~~~Sa~~~~gi~~~~~~i~~~~~~ 180 (192)
.+++++||++|.|++++++++.+.+..
T Consensus 345 ~~~i~iSAktg~GI~~L~~~L~~~l~~ 371 (449)
T PRK05291 345 KPVIRISAKTGEGIDELREAIKELAFG 371 (449)
T ss_pred CceEEEEeeCCCCHHHHHHHHHHHHhh
Confidence 578999999999999999999988754
No 166
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.90 E-value=9.9e-24 Score=146.06 Aligned_cols=162 Identities=18% Similarity=0.146 Sum_probs=100.4
Q ss_pred eeEEEEcCCCCchhHHHHHHhhC----CCCCcc---cCcee-eeeeEEEEEC------------CeEEEEEEEeCCCCCc
Q psy4710 6 KKLVIVGDGACGKTCLLIVFSKD----QFPEVY---VPTVF-ENYVADIEVD------------SKQVELALWDTAGQED 65 (192)
Q Consensus 6 ~~i~v~G~~~~GKSsli~~l~~~----~~~~~~---~~~~~-~~~~~~~~~~------------~~~~~~~l~D~~g~~~ 65 (192)
++|+++|++++|||||+++|... .+...+ .+..+ ........+. .+...+.+|||||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 58999999999999999999873 111111 11111 1111122222 3367899999999866
Q ss_pred ccccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHH
Q psy4710 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGR 145 (192)
Q Consensus 66 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (192)
+..........+|++++|+|+++....+.. +.+. ..... +.|+++++||+|+........ ..++..
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~-~~~~-~~~~~--~~~~iiv~NK~Dl~~~~~~~~----------~~~~~~ 146 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTA-ECLV-IGEIL--CKKLIVVLNKIDLIPEEERER----------KIEKMK 146 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHH-HHHH-HHHHc--CCCEEEEEECcccCCHHHHHH----------HHHHHH
Confidence 543333445678999999999875332222 1222 12222 679999999999864221100 011111
Q ss_pred H-HHHH-----cCCceEEEeccCCcCCHHHHHHHHHHHHhhh
Q psy4710 146 A-MAQK-----INAFAYLECSAKSKEGVREVFETATRAALQV 181 (192)
Q Consensus 146 ~-~~~~-----~~~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~ 181 (192)
+ +... ...++++++||++++|++++++++...+.-+
T Consensus 147 ~~l~~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~~~ 188 (192)
T cd01889 147 KKLQKTLEKTRFKNSPIIPVSAKPGGGEAELGKDLNNLIVLP 188 (192)
T ss_pred HHHHHHHHhcCcCCCCEEEEeccCCCCHHHHHHHHHhccccc
Confidence 1 1111 2336899999999999999999999887643
No 167
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.90 E-value=1.2e-22 Score=159.97 Aligned_cols=162 Identities=20% Similarity=0.272 Sum_probs=107.8
Q ss_pred ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEE
Q psy4710 3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 81 (192)
Q Consensus 3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i 81 (192)
.++.+|+++|++++|||||+++|.+..+.....+..+... ...+...+. ..+.+||||||+.|...+...+..+|+++
T Consensus 85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~-~~i~~iDTPGhe~F~~~r~rga~~aDiaI 163 (587)
T TIGR00487 85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDG-KMITFLDTPGHEAFTSMRARGAKVTDIVV 163 (587)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCC-cEEEEEECCCCcchhhHHHhhhccCCEEE
Confidence 3678999999999999999999998877665443333222 222233222 27899999999999988888889999999
Q ss_pred EEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcC-CceEEEec
Q psy4710 82 MCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKIN-AFAYLECS 160 (192)
Q Consensus 82 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~S 160 (192)
+|+|+++...-+.. +. +..... .+.|+++++||+|+...... .....+. ........++ ..+++++|
T Consensus 164 LVVda~dgv~~qT~-e~-i~~~~~--~~vPiIVviNKiDl~~~~~e-~v~~~L~-------~~g~~~~~~~~~~~~v~iS 231 (587)
T TIGR00487 164 LVVAADDGVMPQTI-EA-ISHAKA--ANVPIIVAINKIDKPEANPD-RVKQELS-------EYGLVPEDWGGDTIFVPVS 231 (587)
T ss_pred EEEECCCCCCHhHH-HH-HHHHHH--cCCCEEEEEECcccccCCHH-HHHHHHH-------HhhhhHHhcCCCceEEEEE
Confidence 99999874221111 12 222222 37999999999998653210 0000000 0000111222 25799999
Q ss_pred cCCcCCHHHHHHHHHHH
Q psy4710 161 AKSKEGVREVFETATRA 177 (192)
Q Consensus 161 a~~~~gi~~~~~~i~~~ 177 (192)
|++|+|++++++++...
T Consensus 232 AktGeGI~eLl~~I~~~ 248 (587)
T TIGR00487 232 ALTGDGIDELLDMILLQ 248 (587)
T ss_pred CCCCCChHHHHHhhhhh
Confidence 99999999999998653
No 168
>KOG1673|consensus
Probab=99.90 E-value=1e-22 Score=129.92 Aligned_cols=170 Identities=23% Similarity=0.451 Sum_probs=142.1
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy4710 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 82 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 82 (192)
..+||.++|++..|||||+-++.++.+.+.+..+.+-+. .+.+.+.+..+.+.+||.+|++++....+..+.++-++++
T Consensus 19 Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIlF 98 (205)
T KOG1673|consen 19 VSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAILF 98 (205)
T ss_pred eEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEEEE
Confidence 478999999999999999999999998877777766555 6677889999999999999999999999999999999999
Q ss_pred EEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccC
Q psy4710 83 CFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAK 162 (192)
Q Consensus 83 v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 162 (192)
++|++.+..+..+. .|.+..+...+..--|+|+||-|+.-..+...+. .-...++.+++..++ +.|.+|+.
T Consensus 99 mFDLt~r~TLnSi~-~WY~QAr~~NktAiPilvGTKyD~fi~lp~e~Q~-------~I~~qar~YAk~mnA-sL~F~Sts 169 (205)
T KOG1673|consen 99 MFDLTRRSTLNSIK-EWYRQARGLNKTAIPILVGTKYDLFIDLPPELQE-------TISRQARKYAKVMNA-SLFFCSTS 169 (205)
T ss_pred EEecCchHHHHHHH-HHHHHHhccCCccceEEeccchHhhhcCCHHHHH-------HHHHHHHHHHHHhCC-cEEEeecc
Confidence 99999999999885 7999988876666668999999986543322111 112345677888884 99999999
Q ss_pred CcCCHHHHHHHHHHHHhhhc
Q psy4710 163 SKEGVREVFETATRAALQVK 182 (192)
Q Consensus 163 ~~~gi~~~~~~i~~~~~~~~ 182 (192)
.+.|++++|+.+..++++-.
T Consensus 170 ~sINv~KIFK~vlAklFnL~ 189 (205)
T KOG1673|consen 170 HSINVQKIFKIVLAKLFNLP 189 (205)
T ss_pred ccccHHHHHHHHHHHHhCCc
Confidence 99999999999999887653
No 169
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.90 E-value=2.5e-23 Score=144.85 Aligned_cols=169 Identities=15% Similarity=0.201 Sum_probs=112.3
Q ss_pred eEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeE-EEEECCeEEEEEEEeCCCCCcccccccccCCCC-CEEEEEE
Q psy4710 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDSKQVELALWDTAGQEDYDRLRPLSYPDT-DVILMCF 84 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~-~~~i~v~ 84 (192)
+|+++|+++||||||+++|....+..+..++ ...... ..........+.+||+||+..++..+...++.+ +++|+|+
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~-~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~Vv 80 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSI-EPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVV 80 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcE-eecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEE
Confidence 6899999999999999999998876654333 222211 111123457899999999999988888888888 9999999
Q ss_pred ECCCh-hhhhchhhhhHHHHhh---hCCCCcEEEEeecccccCCccchhhhhhccC---------------CCCCHH---
Q psy4710 85 SIDSP-DSLENIPEKWTPEVKH---FCPNVPIILVGNKKDLRNDPNTIKELNKMKQ---------------EPVKPE--- 142 (192)
Q Consensus 85 d~~~~-~~~~~~~~~~~~~~~~---~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~---------------~~~~~~--- 142 (192)
|+++. .++....+.+...+.. ..++.|++|++||+|+..+.+.......+.. ......
T Consensus 81 D~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~~~~~i~~~le~ei~~~~~~r~~~l~~~~~~~~~~~ 160 (203)
T cd04105 81 DSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAKPAKKIKEQLEKELNTLRESRSKSLSSLDGDEGSKE 160 (203)
T ss_pred ECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcccCCHHHHHHHHHHHHHHHHHHHhcccccccccccccc
Confidence 99997 5676665555554432 2358999999999999765543221100000 000000
Q ss_pred -------HHHHHHHHcCCceEEEeccCCcC-CHHHHHHHHHH
Q psy4710 143 -------EGRAMAQKINAFAYLECSAKSKE-GVREVFETATR 176 (192)
Q Consensus 143 -------~~~~~~~~~~~~~~~~~Sa~~~~-gi~~~~~~i~~ 176 (192)
....|...-..+.++++|++.+. |++.+.+||.+
T Consensus 161 ~~~~~~~~~f~f~~~~~~v~~~~~s~~~~~~~~~~~~~w~~~ 202 (203)
T cd04105 161 SLGDKGGKSFEFDQLEGKVEFLEGSVKVDGGGIDGWEEWIDE 202 (203)
T ss_pred ccccccCcceeeccCceeEEEEEeEEecCCCChHhHHHHHhh
Confidence 00012111123578899998876 69999999864
No 170
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.90 E-value=5.6e-23 Score=140.36 Aligned_cols=153 Identities=25% Similarity=0.283 Sum_probs=97.9
Q ss_pred EEcCCCCchhHHHHHHhhCCCCCcccCcee-eeeeEEEEECCeEEEEEEEeCCCCCcc----cccc---cccCCCCCEEE
Q psy4710 10 IVGDGACGKTCLLIVFSKDQFPEVYVPTVF-ENYVADIEVDSKQVELALWDTAGQEDY----DRLR---PLSYPDTDVIL 81 (192)
Q Consensus 10 v~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~----~~~~---~~~~~~~~~~i 81 (192)
++|++|||||||+++|.+........+.++ ......+.+. .+..+.+|||||.... ...+ ...++.+|+++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii 79 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVP-DGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAIL 79 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcC-CCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEE
Confidence 589999999999999999865222112222 1112222222 1567899999996331 2222 22467899999
Q ss_pred EEEECCCh------hhhhchhhhhHHHHhhhC--------CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHH
Q psy4710 82 MCFSIDSP------DSLENIPEKWTPEVKHFC--------PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAM 147 (192)
Q Consensus 82 ~v~d~~~~------~~~~~~~~~~~~~~~~~~--------~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (192)
+|+|+++. .++... ..|...+.... .+.|+++|+||+|+..... .........
T Consensus 80 ~v~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~------------~~~~~~~~~ 146 (176)
T cd01881 80 HVVDASEDDDIGGVDPLEDY-EILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEE------------LEEELVREL 146 (176)
T ss_pred EEEeccCCccccccCHHHHH-HHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhH------------HHHHHHHHH
Confidence 99999987 355554 34544444322 3799999999999975321 111111122
Q ss_pred HHHcCCceEEEeccCCcCCHHHHHHHHHHH
Q psy4710 148 AQKINAFAYLECSAKSKEGVREVFETATRA 177 (192)
Q Consensus 148 ~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~ 177 (192)
.... ..+++++||+++.|++++++++.+.
T Consensus 147 ~~~~-~~~~~~~Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 147 ALEE-GAEVVPISAKTEEGLDELIRAIYEL 175 (176)
T ss_pred hcCC-CCCEEEEehhhhcCHHHHHHHHHhh
Confidence 2222 3579999999999999999998764
No 171
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.90 E-value=3.7e-23 Score=144.18 Aligned_cols=164 Identities=16% Similarity=0.115 Sum_probs=101.4
Q ss_pred eeEEEEcCCCCchhHHHHHHhhCCCCC---cccCcee-eeeeEEEEE-------------------------CC------
Q psy4710 6 KKLVIVGDGACGKTCLLIVFSKDQFPE---VYVPTVF-ENYVADIEV-------------------------DS------ 50 (192)
Q Consensus 6 ~~i~v~G~~~~GKSsli~~l~~~~~~~---~~~~~~~-~~~~~~~~~-------------------------~~------ 50 (192)
++|+++|+.|+|||||+.++.+..... ......+ ......+.. ..
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 479999999999999999997642111 0000000 000000000 00
Q ss_pred eEEEEEEEeCCCCCcccccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhh
Q psy4710 51 KQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKE 130 (192)
Q Consensus 51 ~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~ 130 (192)
....+.+|||||++.+...+...+..+|++++|+|++++.......+.+ ..+... ...|+++++||+|+.......
T Consensus 81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l-~~~~~~-~~~~iiivvNK~Dl~~~~~~~-- 156 (203)
T cd01888 81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHL-AALEIM-GLKHIIIVQNKIDLVKEEQAL-- 156 (203)
T ss_pred cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHH-HHHHHc-CCCcEEEEEEchhccCHHHHH--
Confidence 1267899999999988887777788899999999998742111111222 222221 235799999999986521110
Q ss_pred hhhccCCCCCHHHHHHHHHHc--CCceEEEeccCCcCCHHHHHHHHHHHHhhh
Q psy4710 131 LNKMKQEPVKPEEGRAMAQKI--NAFAYLECSAKSKEGVREVFETATRAALQV 181 (192)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~ 181 (192)
...++.+++...+ ..++++++||++++|+++++++|.+.+.++
T Consensus 157 --------~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~~ 201 (203)
T cd01888 157 --------ENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPTP 201 (203)
T ss_pred --------HHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCCC
Confidence 0012222333222 235899999999999999999999877654
No 172
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.90 E-value=2e-23 Score=144.07 Aligned_cols=162 Identities=19% Similarity=0.247 Sum_probs=108.4
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCCCCcc--c---------------CceeeeeeEEEEEC--CeEEEEEEEeCCCCC
Q psy4710 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVY--V---------------PTVFENYVADIEVD--SKQVELALWDTAGQE 64 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~--~---------------~~~~~~~~~~~~~~--~~~~~~~l~D~~g~~ 64 (192)
..++|+++|+.++|||||+++|+........ . ....+.......+. .....+.++|+||+.
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~ 81 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE 81 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence 3578999999999999999999864422110 0 00011111122233 556789999999999
Q ss_pred cccccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHH
Q psy4710 65 DYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEG 144 (192)
Q Consensus 65 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 144 (192)
+|.......++.+|++|+|+|+.++ ........+..+... +.|++|++||+|+..... +....+..
T Consensus 82 ~f~~~~~~~~~~~D~ailvVda~~g--~~~~~~~~l~~~~~~--~~p~ivvlNK~D~~~~~~----------~~~~~~~~ 147 (188)
T PF00009_consen 82 DFIKEMIRGLRQADIAILVVDANDG--IQPQTEEHLKILREL--GIPIIVVLNKMDLIEKEL----------EEIIEEIK 147 (188)
T ss_dssp HHHHHHHHHHTTSSEEEEEEETTTB--STHHHHHHHHHHHHT--T-SEEEEEETCTSSHHHH----------HHHHHHHH
T ss_pred ceeecccceecccccceeeeecccc--ccccccccccccccc--ccceEEeeeeccchhhhH----------HHHHHHHH
Confidence 9888888888999999999999976 333223455555554 799999999999872110 00111111
Q ss_pred HHHHHHc-----CCceEEEeccCCcCCHHHHHHHHHHHHh
Q psy4710 145 RAMAQKI-----NAFAYLECSAKSKEGVREVFETATRAAL 179 (192)
Q Consensus 145 ~~~~~~~-----~~~~~~~~Sa~~~~gi~~~~~~i~~~~~ 179 (192)
..+.+.. ..+|++++||++|.|++++++.+.+.+.
T Consensus 148 ~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 148 EKLLKEYGENGEEIVPVIPISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp HHHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred HHhccccccCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 1333222 2368999999999999999999988753
No 173
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.90 E-value=7.5e-23 Score=158.02 Aligned_cols=164 Identities=18% Similarity=0.158 Sum_probs=106.2
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccc-----------cc
Q psy4710 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLR-----------PL 72 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~-----------~~ 72 (192)
..++|+++|.+|+|||||+++|++..........+++.......+...+..+.+|||||........ ..
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~ 251 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTLK 251 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHHH
Confidence 4689999999999999999999987643322222222222222233344568899999965432221 23
Q ss_pred cCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcC
Q psy4710 73 SYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKIN 152 (192)
Q Consensus 73 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (192)
.++.+|++|+|+|++++.+.+.. .+...+... +.|+++++||+|+....... .. ............
T Consensus 252 ~~~~ad~~ilViD~~~~~~~~~~--~i~~~~~~~--~~~~ivv~NK~Dl~~~~~~~---------~~-~~~~~~~l~~~~ 317 (435)
T PRK00093 252 AIERADVVLLVIDATEGITEQDL--RIAGLALEA--GRALVIVVNKWDLVDEKTME---------EF-KKELRRRLPFLD 317 (435)
T ss_pred HHHHCCEEEEEEeCCCCCCHHHH--HHHHHHHHc--CCcEEEEEECccCCCHHHHH---------HH-HHHHHHhccccc
Confidence 56789999999999987554443 444444443 79999999999987321100 00 011111111223
Q ss_pred CceEEEeccCCcCCHHHHHHHHHHHHhhh
Q psy4710 153 AFAYLECSAKSKEGVREVFETATRAALQV 181 (192)
Q Consensus 153 ~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~ 181 (192)
..|++++||+++.|++++++.+.+.....
T Consensus 318 ~~~i~~~SA~~~~gv~~l~~~i~~~~~~~ 346 (435)
T PRK00093 318 YAPIVFISALTGQGVDKLLEAIDEAYENA 346 (435)
T ss_pred CCCEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 46899999999999999999988766543
No 174
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.89 E-value=1.7e-22 Score=159.66 Aligned_cols=159 Identities=18% Similarity=0.181 Sum_probs=111.6
Q ss_pred eeEEEEcCCCCchhHHHHHHhhCC-------CCCcccCc-------eeeeeeEE--EEE---CCeEEEEEEEeCCCCCcc
Q psy4710 6 KKLVIVGDGACGKTCLLIVFSKDQ-------FPEVYVPT-------VFENYVAD--IEV---DSKQVELALWDTAGQEDY 66 (192)
Q Consensus 6 ~~i~v~G~~~~GKSsli~~l~~~~-------~~~~~~~~-------~~~~~~~~--~~~---~~~~~~~~l~D~~g~~~~ 66 (192)
.+++++|+.++|||||+++|+... +...+..+ +.+..... +.+ ++..+.+.+|||||+.+|
T Consensus 4 RNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF 83 (595)
T TIGR01393 4 RNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF 83 (595)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHH
Confidence 489999999999999999998742 11111111 11111111 222 355689999999999999
Q ss_pred cccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHH
Q psy4710 67 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRA 146 (192)
Q Consensus 67 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (192)
...+...++.+|++|+|+|++++.+.+.. ..|..... .+.|+++|+||+|+..... .....+
T Consensus 84 ~~~v~~~l~~aD~aILVvDat~g~~~qt~-~~~~~~~~---~~ipiIiViNKiDl~~~~~--------------~~~~~e 145 (595)
T TIGR01393 84 SYEVSRSLAACEGALLLVDAAQGIEAQTL-ANVYLALE---NDLEIIPVINKIDLPSADP--------------ERVKKE 145 (595)
T ss_pred HHHHHHHHHhCCEEEEEecCCCCCCHhHH-HHHHHHHH---cCCCEEEEEECcCCCccCH--------------HHHHHH
Confidence 98888899999999999999987555544 24444333 2789999999999854211 112233
Q ss_pred HHHHcCC--ceEEEeccCCcCCHHHHHHHHHHHHhhhc
Q psy4710 147 MAQKINA--FAYLECSAKSKEGVREVFETATRAALQVK 182 (192)
Q Consensus 147 ~~~~~~~--~~~~~~Sa~~~~gi~~~~~~i~~~~~~~~ 182 (192)
+.+.++. .+++++||++|.|++++|++|.+.+..+.
T Consensus 146 l~~~lg~~~~~vi~vSAktG~GI~~Lle~I~~~lp~p~ 183 (595)
T TIGR01393 146 IEEVIGLDASEAILASAKTGIGIEEILEAIVKRVPPPK 183 (595)
T ss_pred HHHHhCCCcceEEEeeccCCCCHHHHHHHHHHhCCCCC
Confidence 4444432 24899999999999999999999887654
No 175
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.89 E-value=2.4e-22 Score=151.46 Aligned_cols=161 Identities=18% Similarity=0.123 Sum_probs=107.4
Q ss_pred eEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCccccc-------ccccCCCCCE
Q psy4710 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRL-------RPLSYPDTDV 79 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~-------~~~~~~~~~~ 79 (192)
.|+++|.||||||||+|+|++.+......|.++.....-+........+.++||||...-.+. ....++.+++
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~radv 240 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHLERCRV 240 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHHHHhCCE
Confidence 689999999999999999998765433334433332222211122346899999996432111 1124678999
Q ss_pred EEEEEECC---ChhhhhchhhhhHHHHhhhC---CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCC
Q psy4710 80 ILMCFSID---SPDSLENIPEKWTPEVKHFC---PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINA 153 (192)
Q Consensus 80 ~i~v~d~~---~~~~~~~~~~~~~~~~~~~~---~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (192)
+++|+|++ +.+.++.. ..|...+..+. .+.|+++|+||+|+..... ..+...++.+.++.
T Consensus 241 lL~VVD~s~~~~~d~~e~~-~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~e-------------l~~~l~~l~~~~~~ 306 (390)
T PRK12298 241 LLHLIDIAPIDGSDPVENA-RIIINELEKYSPKLAEKPRWLVFNKIDLLDEEE-------------AEERAKAIVEALGW 306 (390)
T ss_pred EEEEeccCcccccChHHHH-HHHHHHHHhhhhhhcCCCEEEEEeCCccCChHH-------------HHHHHHHHHHHhCC
Confidence 99999988 33444444 35666666543 3689999999999864211 12233344444332
Q ss_pred -ceEEEeccCCcCCHHHHHHHHHHHHhhh
Q psy4710 154 -FAYLECSAKSKEGVREVFETATRAALQV 181 (192)
Q Consensus 154 -~~~~~~Sa~~~~gi~~~~~~i~~~~~~~ 181 (192)
.+++++||+++.|++++++.|.+.+.+.
T Consensus 307 ~~~Vi~ISA~tg~GIdeLl~~I~~~L~~~ 335 (390)
T PRK12298 307 EGPVYLISAASGLGVKELCWDLMTFIEEN 335 (390)
T ss_pred CCCEEEEECCCCcCHHHHHHHHHHHhhhC
Confidence 3689999999999999999999988664
No 176
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.89 E-value=2.6e-22 Score=160.27 Aligned_cols=163 Identities=22% Similarity=0.285 Sum_probs=109.8
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceee---eeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEE
Q psy4710 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFE---NYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVI 80 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~ 80 (192)
+..+|+++|++++|||||+++|....+.....+..+. .+............+.+|||||++.|...+...+..+|++
T Consensus 243 r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDia 322 (742)
T CHL00189 243 RPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDIA 322 (742)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCEE
Confidence 5679999999999999999999987765543322221 1122222334568899999999999998888888999999
Q ss_pred EEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcC-CceEEEe
Q psy4710 81 LMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKIN-AFAYLEC 159 (192)
Q Consensus 81 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 159 (192)
|+|+|++++...+.. +.| ..+.. .+.|+||++||+|+...... .....+... ..+...++ .++++++
T Consensus 323 ILVVDA~dGv~~QT~-E~I-~~~k~--~~iPiIVViNKiDl~~~~~e-~v~~eL~~~-------~ll~e~~g~~vpvv~V 390 (742)
T CHL00189 323 ILIIAADDGVKPQTI-EAI-NYIQA--ANVPIIVAINKIDKANANTE-RIKQQLAKY-------NLIPEKWGGDTPMIPI 390 (742)
T ss_pred EEEEECcCCCChhhH-HHH-HHHHh--cCceEEEEEECCCccccCHH-HHHHHHHHh-------ccchHhhCCCceEEEE
Confidence 999999875322221 122 22222 37999999999998653210 000000000 00112222 3689999
Q ss_pred ccCCcCCHHHHHHHHHHHH
Q psy4710 160 SAKSKEGVREVFETATRAA 178 (192)
Q Consensus 160 Sa~~~~gi~~~~~~i~~~~ 178 (192)
||++|.|+++++++|....
T Consensus 391 SAktG~GIdeLle~I~~l~ 409 (742)
T CHL00189 391 SASQGTNIDKLLETILLLA 409 (742)
T ss_pred ECCCCCCHHHHHHhhhhhh
Confidence 9999999999999988764
No 177
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.89 E-value=1.3e-22 Score=156.50 Aligned_cols=154 Identities=18% Similarity=0.167 Sum_probs=104.4
Q ss_pred eEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCc--------ccccccccCCCCC
Q psy4710 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQED--------YDRLRPLSYPDTD 78 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~--------~~~~~~~~~~~~~ 78 (192)
+|+++|.+|+|||||+|+|.+..........+.+...........+..+.+|||||... +.......++.+|
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad 80 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEAD 80 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhCC
Confidence 58999999999999999999877433222222222221112222345799999999632 2333455678899
Q ss_pred EEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEE
Q psy4710 79 VILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLE 158 (192)
Q Consensus 79 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (192)
++++|+|+.++. ......+...+++. ++|+++|+||+|+..... ...++ ..++..++++
T Consensus 81 ~vl~vvD~~~~~--~~~d~~i~~~l~~~--~~piilVvNK~D~~~~~~----------------~~~~~-~~lg~~~~~~ 139 (429)
T TIGR03594 81 VILFVVDGREGL--TPEDEEIAKWLRKS--GKPVILVANKIDGKKEDA----------------VAAEF-YSLGFGEPIP 139 (429)
T ss_pred EEEEEEeCCCCC--CHHHHHHHHHHHHh--CCCEEEEEECccCCcccc----------------cHHHH-HhcCCCCeEE
Confidence 999999998753 22223455555554 799999999999865311 11122 2344347899
Q ss_pred eccCCcCCHHHHHHHHHHHHhhh
Q psy4710 159 CSAKSKEGVREVFETATRAALQV 181 (192)
Q Consensus 159 ~Sa~~~~gi~~~~~~i~~~~~~~ 181 (192)
+||.+|.|++++++++.+.+...
T Consensus 140 vSa~~g~gv~~ll~~i~~~l~~~ 162 (429)
T TIGR03594 140 ISAEHGRGIGDLLDAILELLPEE 162 (429)
T ss_pred EeCCcCCChHHHHHHHHHhcCcc
Confidence 99999999999999999887553
No 178
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.88 E-value=2.5e-22 Score=155.16 Aligned_cols=150 Identities=22% Similarity=0.239 Sum_probs=100.6
Q ss_pred eeEEEEcCCCCchhHHHHHHhhCCCCCcc-cCcee-eeeeEEEEECCeEEEEEEEeCCCCCc--------ccccccccCC
Q psy4710 6 KKLVIVGDGACGKTCLLIVFSKDQFPEVY-VPTVF-ENYVADIEVDSKQVELALWDTAGQED--------YDRLRPLSYP 75 (192)
Q Consensus 6 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~--------~~~~~~~~~~ 75 (192)
++|+++|.+|+|||||+|+|.+....... .+..+ ......+... +..+.+|||||+.. +.......++
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~--~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~ 79 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWL--GREFILIDTGGIEPDDDGFEKQIREQAELAIE 79 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEEC--CcEEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence 58999999999999999999987643221 22222 2222333333 37899999999876 2222344567
Q ss_pred CCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCce
Q psy4710 76 DTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFA 155 (192)
Q Consensus 76 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (192)
.+|++|+|+|+.++.+. ....+...++.. +.|+++|+||+|+... .....++ ..++.-.
T Consensus 80 ~ad~il~vvd~~~~~~~--~~~~~~~~l~~~--~~piilv~NK~D~~~~----------------~~~~~~~-~~lg~~~ 138 (435)
T PRK00093 80 EADVILFVVDGRAGLTP--ADEEIAKILRKS--NKPVILVVNKVDGPDE----------------EADAYEF-YSLGLGE 138 (435)
T ss_pred hCCEEEEEEECCCCCCH--HHHHHHHHHHHc--CCcEEEEEECccCccc----------------hhhHHHH-HhcCCCC
Confidence 89999999999875322 222333444443 7999999999996431 1112222 2334334
Q ss_pred EEEeccCCcCCHHHHHHHHHHHH
Q psy4710 156 YLECSAKSKEGVREVFETATRAA 178 (192)
Q Consensus 156 ~~~~Sa~~~~gi~~~~~~i~~~~ 178 (192)
++++||++|.|++++++.+....
T Consensus 139 ~~~iSa~~g~gv~~l~~~I~~~~ 161 (435)
T PRK00093 139 PYPISAEHGRGIGDLLDAILEEL 161 (435)
T ss_pred CEEEEeeCCCCHHHHHHHHHhhC
Confidence 78999999999999999998743
No 179
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.88 E-value=4.9e-22 Score=152.47 Aligned_cols=161 Identities=19% Similarity=0.182 Sum_probs=103.6
Q ss_pred eeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCccccc-------ccccCCCCC
Q psy4710 6 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRL-------RPLSYPDTD 78 (192)
Q Consensus 6 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~-------~~~~~~~~~ 78 (192)
..|+++|.||||||||+++|.+........+.++...... .+......+.+||+||.....+. ....++.++
T Consensus 160 adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lG-vv~~~~~~f~laDtPGliegas~g~gLg~~fLrhierad 238 (500)
T PRK12296 160 ADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLG-VVQAGDTRFTVADVPGLIPGASEGKGLGLDFLRHIERCA 238 (500)
T ss_pred ceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEE-EEEECCeEEEEEECCCCccccchhhHHHHHHHHHHHhcC
Confidence 4799999999999999999998765433333333222211 12223467999999995321111 122356799
Q ss_pred EEEEEEECCCh----hhhhchhhhhHHHHhhh------------CCCCcEEEEeecccccCCccchhhhhhccCCCCCHH
Q psy4710 79 VILMCFSIDSP----DSLENIPEKWTPEVKHF------------CPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPE 142 (192)
Q Consensus 79 ~~i~v~d~~~~----~~~~~~~~~~~~~~~~~------------~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 142 (192)
++|+|+|+++. +.++.+ +.|...+..+ ..+.|++||+||+|+..... . .+
T Consensus 239 vLv~VVD~s~~e~~rdp~~d~-~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~e------------l-~e 304 (500)
T PRK12296 239 VLVHVVDCATLEPGRDPLSDI-DALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARE------------L-AE 304 (500)
T ss_pred EEEEEECCcccccccCchhhH-HHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHH------------H-HH
Confidence 99999999863 233333 2333333322 23689999999999864211 0 11
Q ss_pred HHHHHHHHcCCceEEEeccCCcCCHHHHHHHHHHHHhhhc
Q psy4710 143 EGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVK 182 (192)
Q Consensus 143 ~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~~ 182 (192)
.........+ ++++++||++++|+++++.+|.+.+...+
T Consensus 305 ~l~~~l~~~g-~~Vf~ISA~tgeGLdEL~~~L~ell~~~r 343 (500)
T PRK12296 305 FVRPELEARG-WPVFEVSAASREGLRELSFALAELVEEAR 343 (500)
T ss_pred HHHHHHHHcC-CeEEEEECCCCCCHHHHHHHHHHHHHhhh
Confidence 1111222334 68999999999999999999998887654
No 180
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.88 E-value=7.3e-22 Score=158.99 Aligned_cols=161 Identities=22% Similarity=0.284 Sum_probs=108.6
Q ss_pred ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEE
Q psy4710 3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 81 (192)
Q Consensus 3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i 81 (192)
.+...|+++|+.++|||||+++|.+..+.....+..+... ...+.+. +..+.+|||||+..|...+...+..+|++|
T Consensus 288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~--~~~ItfiDTPGhe~F~~m~~rga~~aDiaI 365 (787)
T PRK05306 288 PRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETN--GGKITFLDTPGHEAFTAMRARGAQVTDIVV 365 (787)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEEC--CEEEEEEECCCCccchhHHHhhhhhCCEEE
Confidence 4678999999999999999999988776654333322211 1222333 467899999999999998888888999999
Q ss_pred EEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcC-CceEEEec
Q psy4710 82 MCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKIN-AFAYLECS 160 (192)
Q Consensus 82 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~S 160 (192)
+|+|+++...-+.. +.| ..... .+.|+||++||+|+...+.. .....+. ....+...++ .++++++|
T Consensus 366 LVVdAddGv~~qT~-e~i-~~a~~--~~vPiIVviNKiDl~~a~~e-~V~~eL~-------~~~~~~e~~g~~vp~vpvS 433 (787)
T PRK05306 366 LVVAADDGVMPQTI-EAI-NHAKA--AGVPIIVAINKIDKPGANPD-RVKQELS-------EYGLVPEEWGGDTIFVPVS 433 (787)
T ss_pred EEEECCCCCCHhHH-HHH-HHHHh--cCCcEEEEEECccccccCHH-HHHHHHH-------HhcccHHHhCCCceEEEEe
Confidence 99999874211111 122 22222 37999999999999653210 0000000 0001122232 36899999
Q ss_pred cCCcCCHHHHHHHHHHH
Q psy4710 161 AKSKEGVREVFETATRA 177 (192)
Q Consensus 161 a~~~~gi~~~~~~i~~~ 177 (192)
|++|.|+++++++|...
T Consensus 434 AktG~GI~eLle~I~~~ 450 (787)
T PRK05306 434 AKTGEGIDELLEAILLQ 450 (787)
T ss_pred CCCCCCchHHHHhhhhh
Confidence 99999999999998754
No 181
>PRK11058 GTPase HflX; Provisional
Probab=99.88 E-value=8.4e-22 Score=150.15 Aligned_cols=155 Identities=19% Similarity=0.162 Sum_probs=102.9
Q ss_pred eeEEEEcCCCCchhHHHHHHhhCCCCCcccCcee-eeeeEEEEECCeEEEEEEEeCCCCCcc--cccc------cccCCC
Q psy4710 6 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVF-ENYVADIEVDSKQVELALWDTAGQEDY--DRLR------PLSYPD 76 (192)
Q Consensus 6 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~--~~~~------~~~~~~ 76 (192)
.+|+++|.+|+|||||+|+|.+..+.....+..+ +.....+...+ ...+.+|||||..+. ...+ ...++.
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~-~~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ 276 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVAD-VGETVLADTVGFIRHLPHDLVAAFKATLQETRQ 276 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCC-CCeEEEEecCcccccCCHHHHHHHHHHHHHhhc
Confidence 5899999999999999999998765432222222 22233344433 226789999997332 1111 123578
Q ss_pred CCEEEEEEECCChhhhhchhhhhHHHHhhhC-CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCce
Q psy4710 77 TDVILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFA 155 (192)
Q Consensus 77 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (192)
+|++|+|+|++++.+...+. .|...+.... .+.|+++|+||+|+..... ... .. ...+ .+
T Consensus 277 ADlIL~VvDaS~~~~~e~l~-~v~~iL~el~~~~~pvIiV~NKiDL~~~~~---------------~~~-~~-~~~~-~~ 337 (426)
T PRK11058 277 ATLLLHVVDAADVRVQENIE-AVNTVLEEIDAHEIPTLLVMNKIDMLDDFE---------------PRI-DR-DEEN-KP 337 (426)
T ss_pred CCEEEEEEeCCCccHHHHHH-HHHHHHHHhccCCCCEEEEEEcccCCCchh---------------HHH-HH-HhcC-CC
Confidence 99999999999987666652 3444443322 3799999999999864210 000 00 1122 23
Q ss_pred -EEEeccCCcCCHHHHHHHHHHHHhh
Q psy4710 156 -YLECSAKSKEGVREVFETATRAALQ 180 (192)
Q Consensus 156 -~~~~Sa~~~~gi~~~~~~i~~~~~~ 180 (192)
++.+||++|.|+++++++|.+.+..
T Consensus 338 ~~v~ISAktG~GIdeL~e~I~~~l~~ 363 (426)
T PRK11058 338 IRVWLSAQTGAGIPLLFQALTERLSG 363 (426)
T ss_pred ceEEEeCCCCCCHHHHHHHHHHHhhh
Confidence 5889999999999999999998854
No 182
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.88 E-value=4.3e-22 Score=161.14 Aligned_cols=158 Identities=18% Similarity=0.185 Sum_probs=105.7
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCCC--CcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcc-ccc----------c
Q psy4710 4 IRKKLVIVGDGACGKTCLLIVFSKDQFP--EVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY-DRL----------R 70 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~-~~~----------~ 70 (192)
..+||+++|.+|+|||||+|+|++.... .....++.+.....+.+++ ..+.+|||||.... ... .
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~--~~~~liDTaG~~~~~~~~~~~e~~~~~r~ 526 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDG--EDWLFIDTAGIKRRQHKLTGAEYYSSLRT 526 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECC--CEEEEEECCCcccCcccchhHHHHHHHHH
Confidence 3589999999999999999999998743 2222222222233334444 35679999995421 111 1
Q ss_pred cccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHH-HHHH
Q psy4710 71 PLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGR-AMAQ 149 (192)
Q Consensus 71 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 149 (192)
...++.+|++++|+|++++.+.+.. .+...+... +.|+++|+||+|+.+... .+... .+..
T Consensus 527 ~~~i~~advvilViDat~~~s~~~~--~i~~~~~~~--~~piIiV~NK~DL~~~~~--------------~~~~~~~~~~ 588 (712)
T PRK09518 527 QAAIERSELALFLFDASQPISEQDL--KVMSMAVDA--GRALVLVFNKWDLMDEFR--------------RQRLERLWKT 588 (712)
T ss_pred HHHhhcCCEEEEEEECCCCCCHHHH--HHHHHHHHc--CCCEEEEEEchhcCChhH--------------HHHHHHHHHH
Confidence 2346789999999999988666654 344444433 799999999999965211 01111 1111
Q ss_pred ---HcCCceEEEeccCCcCCHHHHHHHHHHHHhhh
Q psy4710 150 ---KINAFAYLECSAKSKEGVREVFETATRAALQV 181 (192)
Q Consensus 150 ---~~~~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~ 181 (192)
.....+++++||++|.|++++++.+.+.+...
T Consensus 589 ~l~~~~~~~ii~iSAktg~gv~~L~~~i~~~~~~~ 623 (712)
T PRK09518 589 EFDRVTWARRVNLSAKTGWHTNRLAPAMQEALESW 623 (712)
T ss_pred hccCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 12335789999999999999999999887654
No 183
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.88 E-value=9.2e-22 Score=131.89 Aligned_cols=154 Identities=21% Similarity=0.206 Sum_probs=101.1
Q ss_pred EEcCCCCchhHHHHHHhhCCCCC-cccCceeeeeeEEEEECCeEEEEEEEeCCCCCccccccc-------ccCCCCCEEE
Q psy4710 10 IVGDGACGKTCLLIVFSKDQFPE-VYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRP-------LSYPDTDVIL 81 (192)
Q Consensus 10 v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~-------~~~~~~~~~i 81 (192)
++|++|||||||++++.+..... ...+..+...............+.+||+||...+..... ..++.+|+++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il 80 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELARRVLERADLIL 80 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEE
Confidence 58999999999999999876552 222222222221111111156899999999876654333 3677899999
Q ss_pred EEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEecc
Q psy4710 82 MCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSA 161 (192)
Q Consensus 82 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 161 (192)
+|+|+.+........ +...... .+.|+++++||+|+........... ............+++++|+
T Consensus 81 ~v~~~~~~~~~~~~~--~~~~~~~--~~~~~ivv~nK~D~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~sa 146 (163)
T cd00880 81 FVVDADLRADEEEEK--LLELLRE--RGKPVLLVLNKIDLLPEEEEEELLE----------LRLLILLLLLGLPVIAVSA 146 (163)
T ss_pred EEEeCCCCCCHHHHH--HHHHHHh--cCCeEEEEEEccccCChhhHHHHHH----------HHHhhcccccCCceEEEee
Confidence 999999875554442 3333332 3899999999999876432111100 0112222334468999999
Q ss_pred CCcCCHHHHHHHHHHH
Q psy4710 162 KSKEGVREVFETATRA 177 (192)
Q Consensus 162 ~~~~gi~~~~~~i~~~ 177 (192)
.++.|++++++++.+.
T Consensus 147 ~~~~~v~~l~~~l~~~ 162 (163)
T cd00880 147 LTGEGIDELREALIEA 162 (163)
T ss_pred eccCCHHHHHHHHHhh
Confidence 9999999999998875
No 184
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.88 E-value=6.7e-22 Score=156.23 Aligned_cols=158 Identities=18% Similarity=0.180 Sum_probs=108.6
Q ss_pred eeEEEEcCCCCchhHHHHHHhhCC---CCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEE
Q psy4710 6 KKLVIVGDGACGKTCLLIVFSKDQ---FPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 81 (192)
Q Consensus 6 ~~i~v~G~~~~GKSsli~~l~~~~---~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i 81 (192)
+.|+++|++++|||||+++|.+.. ++....++.+... ...+..+ +..+.+||+||++.|.......+.++|+++
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~--~~~v~~iDtPGhe~f~~~~~~g~~~aD~aI 78 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLP--DYRLGFIDVPGHEKFISNAIAGGGGIDAAL 78 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeC--CEEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence 468999999999999999999643 2222223332222 2223333 378999999999999888888889999999
Q ss_pred EEEECCCh---hhhhchhhhhHHHHhhhCCCCc-EEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcC---Cc
Q psy4710 82 MCFSIDSP---DSLENIPEKWTPEVKHFCPNVP-IILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKIN---AF 154 (192)
Q Consensus 82 ~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 154 (192)
+|+|++++ ++.+.+ ..+... +.| ++|++||+|+.+.... ....++...+...++ ..
T Consensus 79 LVVDa~~G~~~qT~ehl-----~il~~l--gi~~iIVVlNK~Dlv~~~~~----------~~~~~ei~~~l~~~~~~~~~ 141 (581)
T TIGR00475 79 LVVDADEGVMTQTGEHL-----AVLDLL--GIPHTIVVITKADRVNEEEI----------KRTEMFMKQILNSYIFLKNA 141 (581)
T ss_pred EEEECCCCCcHHHHHHH-----HHHHHc--CCCeEEEEEECCCCCCHHHH----------HHHHHHHHHHHHHhCCCCCC
Confidence 99999983 333332 233322 677 9999999999652110 011223344444332 36
Q ss_pred eEEEeccCCcCCHHHHHHHHHHHHhhhc
Q psy4710 155 AYLECSAKSKEGVREVFETATRAALQVK 182 (192)
Q Consensus 155 ~~~~~Sa~~~~gi~~~~~~i~~~~~~~~ 182 (192)
+++++||++|+|++++++.+...+....
T Consensus 142 ~ii~vSA~tG~GI~eL~~~L~~l~~~~~ 169 (581)
T TIGR00475 142 KIFKTSAKTGQGIGELKKELKNLLESLD 169 (581)
T ss_pred cEEEEeCCCCCCchhHHHHHHHHHHhCC
Confidence 8999999999999999999877665543
No 185
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.88 E-value=7.9e-22 Score=146.91 Aligned_cols=167 Identities=19% Similarity=0.150 Sum_probs=121.9
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccc-----------cc
Q psy4710 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLR-----------PL 72 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~-----------~~ 72 (192)
..+||+++|.||+|||||+|++++.........++++.......++.++..+.++||+|...-.... ..
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~ 256 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTLK 256 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhHh
Confidence 4699999999999999999999999887777677777766666666667789999999954322221 23
Q ss_pred cCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcC
Q psy4710 73 SYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKIN 152 (192)
Q Consensus 73 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (192)
.+..+|.+++|+|++.+-+-++ ......+.+. +.+++|++||+|+.+.+... ......+..+.....+
T Consensus 257 aI~~a~vvllviDa~~~~~~qD--~~ia~~i~~~--g~~~vIvvNKWDl~~~~~~~--------~~~~k~~i~~~l~~l~ 324 (444)
T COG1160 257 AIERADVVLLVIDATEGISEQD--LRIAGLIEEA--GRGIVIVVNKWDLVEEDEAT--------MEEFKKKLRRKLPFLD 324 (444)
T ss_pred HHhhcCEEEEEEECCCCchHHH--HHHHHHHHHc--CCCeEEEEEccccCCchhhH--------HHHHHHHHHHHhcccc
Confidence 4567999999999998744443 4677777665 89999999999997742110 0011122233333445
Q ss_pred CceEEEeccCCcCCHHHHHHHHHHHHhhhc
Q psy4710 153 AFAYLECSAKSKEGVREVFETATRAALQVK 182 (192)
Q Consensus 153 ~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~~ 182 (192)
..|++.+||+++.|++++|+.+.+......
T Consensus 325 ~a~i~~iSA~~~~~i~~l~~~i~~~~~~~~ 354 (444)
T COG1160 325 FAPIVFISALTGQGLDKLFEAIKEIYECAT 354 (444)
T ss_pred CCeEEEEEecCCCChHHHHHHHHHHHHHhc
Confidence 468999999999999999999887765543
No 186
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.88 E-value=7.1e-22 Score=137.25 Aligned_cols=159 Identities=13% Similarity=0.121 Sum_probs=98.0
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCc----------cccccccc
Q psy4710 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQED----------YDRLRPLS 73 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~----------~~~~~~~~ 73 (192)
..++|+++|++|+|||||++++.+..+.....++.+.+..... .. ....+.+|||||... +......+
T Consensus 23 ~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~-~~-~~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 100 (196)
T PRK00454 23 DGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINF-FE-VNDKLRLVDLPGYGYAKVSKEEKEKWQKLIEEY 100 (196)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEE-Ee-cCCeEEEeCCCCCCCcCCCchHHHHHHHHHHHH
Confidence 4689999999999999999999987643333333222111111 11 135799999999532 11122222
Q ss_pred CC---CCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHH
Q psy4710 74 YP---DTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQK 150 (192)
Q Consensus 74 ~~---~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (192)
++ ..+++++++|.+++..... ..+...+... +.|+++++||+|+.+..... .......+....
T Consensus 101 ~~~~~~~~~~~~v~d~~~~~~~~~--~~i~~~l~~~--~~~~iiv~nK~Dl~~~~~~~----------~~~~~i~~~l~~ 166 (196)
T PRK00454 101 LRTRENLKGVVLLIDSRHPLKELD--LQMIEWLKEY--GIPVLIVLTKADKLKKGERK----------KQLKKVRKALKF 166 (196)
T ss_pred HHhCccceEEEEEEecCCCCCHHH--HHHHHHHHHc--CCcEEEEEECcccCCHHHHH----------HHHHHHHHHHHh
Confidence 22 4478888899876532222 1233333332 78999999999986532110 011122233322
Q ss_pred cCCceEEEeccCCcCCHHHHHHHHHHHHh
Q psy4710 151 INAFAYLECSAKSKEGVREVFETATRAAL 179 (192)
Q Consensus 151 ~~~~~~~~~Sa~~~~gi~~~~~~i~~~~~ 179 (192)
. ..+++++||+++.|++++++.|.+.+-
T Consensus 167 ~-~~~~~~~Sa~~~~gi~~l~~~i~~~~~ 194 (196)
T PRK00454 167 G-DDEVILFSSLKKQGIDELRAAIAKWLA 194 (196)
T ss_pred c-CCceEEEEcCCCCCHHHHHHHHHHHhc
Confidence 2 258899999999999999999987664
No 187
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.88 E-value=2.3e-22 Score=137.76 Aligned_cols=149 Identities=14% Similarity=0.126 Sum_probs=91.3
Q ss_pred ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCc----------cccccc
Q psy4710 3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQED----------YDRLRP 71 (192)
Q Consensus 3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~----------~~~~~~ 71 (192)
...++|+++|++|+|||||++++.+..+.....++...+. ......+. .+.+|||||... +.....
T Consensus 16 ~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~ 92 (179)
T TIGR03598 16 DDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQKLIE 92 (179)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHHHHHH
Confidence 4678999999999999999999998763332222222211 11122221 689999999532 111111
Q ss_pred ccCC---CCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHH
Q psy4710 72 LSYP---DTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMA 148 (192)
Q Consensus 72 ~~~~---~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (192)
.+++ .++++++|+|++++-+... ..+...+... +.|+++++||+|+....... ...++.++..
T Consensus 93 ~~l~~~~~~~~ii~vvd~~~~~~~~~--~~~~~~~~~~--~~pviiv~nK~D~~~~~~~~----------~~~~~i~~~l 158 (179)
T TIGR03598 93 EYLEKRENLKGVVLLMDIRHPLKELD--LEMLEWLRER--GIPVLIVLTKADKLKKSELN----------KQLKKIKKAL 158 (179)
T ss_pred HHHHhChhhcEEEEEecCCCCCCHHH--HHHHHHHHHc--CCCEEEEEECcccCCHHHHH----------HHHHHHHHHH
Confidence 2222 4689999999987533222 2334444443 78999999999986532211 1122233333
Q ss_pred HHcC-CceEEEeccCCcCCHH
Q psy4710 149 QKIN-AFAYLECSAKSKEGVR 168 (192)
Q Consensus 149 ~~~~-~~~~~~~Sa~~~~gi~ 168 (192)
...+ ..+++++||++|+|++
T Consensus 159 ~~~~~~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 159 KKDADDPSVQLFSSLKKTGID 179 (179)
T ss_pred hhccCCCceEEEECCCCCCCC
Confidence 3332 2479999999999974
No 188
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.88 E-value=1.4e-21 Score=153.63 Aligned_cols=167 Identities=19% Similarity=0.241 Sum_probs=104.9
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceee----eeeEEEEE--------------CCeEEEEEEEeCCCCCc
Q psy4710 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFE----NYVADIEV--------------DSKQVELALWDTAGQED 65 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~----~~~~~~~~--------------~~~~~~~~l~D~~g~~~ 65 (192)
+..-|+++|++++|||||+++|.+..+........+. ... .... +.....+.+|||||++.
T Consensus 3 r~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v-~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~ 81 (590)
T TIGR00491 3 RSPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEI-PMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEA 81 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEe-eeccccccccccccccccccccCcEEEEECCCcHh
Confidence 5567999999999999999999988765432221111 111 0000 00112388999999999
Q ss_pred ccccccccCCCCCEEEEEEECCCh---hhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccc---hhhhh-------
Q psy4710 66 YDRLRPLSYPDTDVILMCFSIDSP---DSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNT---IKELN------- 132 (192)
Q Consensus 66 ~~~~~~~~~~~~~~~i~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~---~~~~~------- 132 (192)
|...+...++.+|++++|+|+++. ++++.+ ..+... +.|+++++||+|+...-.. ...++
T Consensus 82 f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i-----~~l~~~--~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~ 154 (590)
T TIGR00491 82 FTNLRKRGGALADLAILIVDINEGFKPQTQEAL-----NILRMY--KTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEI 154 (590)
T ss_pred HHHHHHHHHhhCCEEEEEEECCcCCCHhHHHHH-----HHHHHc--CCCEEEEEECCCccchhhhccCchHHHHHHhhhH
Confidence 999888888999999999999873 333322 223322 7899999999999642110 00000
Q ss_pred ---------------hccCCCCCHHHHHHHHHHcCCceEEEeccCCcCCHHHHHHHHHHHH
Q psy4710 133 ---------------KMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAA 178 (192)
Q Consensus 133 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~~ 178 (192)
.+.......+......+..+..+++++||++|+|+++++.++....
T Consensus 155 ~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~ 215 (590)
T TIGR00491 155 QVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLA 215 (590)
T ss_pred HHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHH
Confidence 0000001111111111223447899999999999999999886543
No 189
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.87 E-value=9.6e-22 Score=159.17 Aligned_cols=155 Identities=16% Similarity=0.137 Sum_probs=104.3
Q ss_pred ceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcc--------cccccccCCC
Q psy4710 5 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDY--------DRLRPLSYPD 76 (192)
Q Consensus 5 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~--------~~~~~~~~~~ 76 (192)
-.+|+++|.+|+|||||+|+|++..........+.+...........+..+.+|||||.... .......++.
T Consensus 275 ~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ 354 (712)
T PRK09518 275 VGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIAVSL 354 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHHHHh
Confidence 46899999999999999999998764332222222222222222223457899999997532 2223345678
Q ss_pred CCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceE
Q psy4710 77 TDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAY 156 (192)
Q Consensus 77 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (192)
+|++|+|+|+++. +....+.|...++.. +.|+++|+||+|+.... ....++.. ++.-..
T Consensus 355 aD~iL~VvDa~~~--~~~~d~~i~~~Lr~~--~~pvIlV~NK~D~~~~~----------------~~~~~~~~-lg~~~~ 413 (712)
T PRK09518 355 ADAVVFVVDGQVG--LTSTDERIVRMLRRA--GKPVVLAVNKIDDQASE----------------YDAAEFWK-LGLGEP 413 (712)
T ss_pred CCEEEEEEECCCC--CCHHHHHHHHHHHhc--CCCEEEEEECcccccch----------------hhHHHHHH-cCCCCe
Confidence 9999999999864 444444566666654 89999999999975410 11112211 221245
Q ss_pred EEeccCCcCCHHHHHHHHHHHHhh
Q psy4710 157 LECSAKSKEGVREVFETATRAALQ 180 (192)
Q Consensus 157 ~~~Sa~~~~gi~~~~~~i~~~~~~ 180 (192)
+++||++|.|++++++++.+.+..
T Consensus 414 ~~iSA~~g~GI~eLl~~i~~~l~~ 437 (712)
T PRK09518 414 YPISAMHGRGVGDLLDEALDSLKV 437 (712)
T ss_pred EEEECCCCCCchHHHHHHHHhccc
Confidence 789999999999999999988865
No 190
>KOG0072|consensus
Probab=99.87 E-value=1e-22 Score=128.35 Aligned_cols=164 Identities=18% Similarity=0.260 Sum_probs=122.8
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEE
Q psy4710 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMC 83 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v 83 (192)
++.+|+++|..|+||||+..++.-+....+ .|+.+.+.. .+.+++.++++||.+|+-+.+..|+.++.+.|++|+|
T Consensus 17 ~e~rililgldGaGkttIlyrlqvgevvtt-kPtigfnve---~v~yKNLk~~vwdLggqtSirPyWRcYy~dt~avIyV 92 (182)
T KOG0072|consen 17 REMRILILGLDGAGKTTILYRLQVGEVVTT-KPTIGFNVE---TVPYKNLKFQVWDLGGQTSIRPYWRCYYADTDAVIYV 92 (182)
T ss_pred cceEEEEeeccCCCeeEEEEEcccCccccc-CCCCCcCcc---ccccccccceeeEccCcccccHHHHHHhcccceEEEE
Confidence 789999999999999999888776655443 444443332 3456889999999999999999999999999999999
Q ss_pred EECCChhhhhchhhhhHHHHhh-hCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccC
Q psy4710 84 FSIDSPDSLENIPEKWTPEVKH-FCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAK 162 (192)
Q Consensus 84 ~d~~~~~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 162 (192)
+|.+|.+........+..++.+ ...+..+++++||.|....-...+....+.. ..+.+ ..+.+|.+||.
T Consensus 93 VDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l--------~~Lk~--r~~~Iv~tSA~ 162 (182)
T KOG0072|consen 93 VDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGL--------QKLKD--RIWQIVKTSAV 162 (182)
T ss_pred EeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhCh--------HHHhh--heeEEEeeccc
Confidence 9999988777665556665543 3457889999999998763222211111111 11212 23789999999
Q ss_pred CcCCHHHHHHHHHHHHhhh
Q psy4710 163 SKEGVREVFETATRAALQV 181 (192)
Q Consensus 163 ~~~gi~~~~~~i~~~~~~~ 181 (192)
+|+|+++.++|+.+.+..+
T Consensus 163 kg~Gld~~~DWL~~~l~~~ 181 (182)
T KOG0072|consen 163 KGEGLDPAMDWLQRPLKSR 181 (182)
T ss_pred cccCCcHHHHHHHHHHhcc
Confidence 9999999999999887654
No 191
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.87 E-value=2.3e-21 Score=137.69 Aligned_cols=169 Identities=18% Similarity=0.125 Sum_probs=112.6
Q ss_pred eEEEEcCCCCchhHHHHHHhhCCCCC--------cc-----c----CceeeeeeEEEEECCeEEEEEEEeCCCCCccccc
Q psy4710 7 KLVIVGDGACGKTCLLIVFSKDQFPE--------VY-----V----PTVFENYVADIEVDSKQVELALWDTAGQEDYDRL 69 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~~~~~~--------~~-----~----~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~ 69 (192)
+|+++|+.|+|||||+++|+...-.. .. . ....+.......+...+..+.+|||||+.+|...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 58999999999999999998642110 00 0 0000111122334455678999999999999888
Q ss_pred ccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchh--hh----------------
Q psy4710 70 RPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIK--EL---------------- 131 (192)
Q Consensus 70 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~--~~---------------- 131 (192)
+...++.+|++++|+|+++... ...+.+...+... +.|+++++||+|+........ .+
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~~--~~~~~~~~~~~~~--~~P~iivvNK~D~~~a~~~~~~~~i~~~~~~~~~~~~~p~~ 156 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQ--AQTRILWRLLRKL--NIPTIIFVNKIDRAGADLEKVYQEIKEKLSSDIVPMQKVGL 156 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCCC--HHHHHHHHHHHHc--CCCEEEEEECccccCCCHHHHHHHHHHHHCCCeEEEECCcE
Confidence 8888999999999999998633 2224555555554 799999999999975332100 00
Q ss_pred ---------------------------hhccCCCCCHHHHHHH----HHHcCCceEEEeccCCcCCHHHHHHHHHHHHh
Q psy4710 132 ---------------------------NKMKQEPVKPEEGRAM----AQKINAFAYLECSAKSKEGVREVFETATRAAL 179 (192)
Q Consensus 132 ---------------------------~~~~~~~~~~~~~~~~----~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~~~ 179 (192)
.++.....+.++...- ......+|++..||.++.|++.+++.+.+.+.
T Consensus 157 ~~~~~~~~~~~~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l~~~~~~~~~~Pv~~gsa~~~~Gv~~ll~~~~~~~p 235 (237)
T cd04168 157 APNICETNEIDDEFWETLAEGDDELLEKYLEGGPIEELELDNELSARIAKRKVFPVYHGSALKGIGIEELLEGITKLFP 235 (237)
T ss_pred eeeeeeeeeccHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCeEEEEEccccCCcCHHHHHHHHHHhcC
Confidence 2222233444333321 12234478999999999999999999988764
No 192
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.87 E-value=1.2e-21 Score=146.38 Aligned_cols=155 Identities=23% Similarity=0.221 Sum_probs=118.6
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCccccccc--------ccCC
Q psy4710 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRP--------LSYP 75 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~--------~~~~ 75 (192)
.-+|++++|.||+|||||+|+|++......+.-+++++......+.-.++.+.+.||+|..+..+... ..++
T Consensus 216 ~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~~i~ 295 (454)
T COG0486 216 EGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERAKKAIE 295 (454)
T ss_pred cCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCccHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999888877777777777777888889999999999765544332 3467
Q ss_pred CCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCce
Q psy4710 76 DTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFA 155 (192)
Q Consensus 76 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (192)
.+|.+++|+|.+.+. .......+. ....++|+++|.||.|+...... ..+ +..+..+
T Consensus 296 ~ADlvL~v~D~~~~~--~~~d~~~~~---~~~~~~~~i~v~NK~DL~~~~~~-----------------~~~-~~~~~~~ 352 (454)
T COG0486 296 EADLVLFVLDASQPL--DKEDLALIE---LLPKKKPIIVVLNKADLVSKIEL-----------------ESE-KLANGDA 352 (454)
T ss_pred hCCEEEEEEeCCCCC--chhhHHHHH---hcccCCCEEEEEechhccccccc-----------------chh-hccCCCc
Confidence 899999999999862 222222333 22347999999999999874320 011 1122247
Q ss_pred EEEeccCCcCCHHHHHHHHHHHHhhh
Q psy4710 156 YLECSAKSKEGVREVFETATRAALQV 181 (192)
Q Consensus 156 ~~~~Sa~~~~gi~~~~~~i~~~~~~~ 181 (192)
++.+|+++++|++.+.+.|.+.+...
T Consensus 353 ~i~iSa~t~~Gl~~L~~~i~~~~~~~ 378 (454)
T COG0486 353 IISISAKTGEGLDALREAIKQLFGKG 378 (454)
T ss_pred eEEEEecCccCHHHHHHHHHHHHhhc
Confidence 89999999999999999999888776
No 193
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.87 E-value=4.6e-22 Score=148.13 Aligned_cols=152 Identities=20% Similarity=0.187 Sum_probs=111.7
Q ss_pred eeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCccc---------ccccccCCC
Q psy4710 6 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYD---------RLRPLSYPD 76 (192)
Q Consensus 6 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~---------~~~~~~~~~ 76 (192)
..|+++|.||+|||||+|+|.+...+.....++.++....-.....+..+.++||+|.+... .+....+..
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~e 83 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIEE 83 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHh
Confidence 67999999999999999999999887766666655554332333344569999999966432 223345678
Q ss_pred CCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceE
Q psy4710 77 TDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAY 156 (192)
Q Consensus 77 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (192)
||++|||+|...+ +...++.+...+++. ++|+++|+||+|.... .....+|. .++.-.+
T Consensus 84 ADvilfvVD~~~G--it~~D~~ia~~Lr~~--~kpviLvvNK~D~~~~----------------e~~~~efy-slG~g~~ 142 (444)
T COG1160 84 ADVILFVVDGREG--ITPADEEIAKILRRS--KKPVILVVNKIDNLKA----------------EELAYEFY-SLGFGEP 142 (444)
T ss_pred CCEEEEEEeCCCC--CCHHHHHHHHHHHhc--CCCEEEEEEcccCchh----------------hhhHHHHH-hcCCCCc
Confidence 9999999999875 444445666676643 6999999999996531 12222332 2333468
Q ss_pred EEeccCCcCCHHHHHHHHHHHH
Q psy4710 157 LECSAKSKEGVREVFETATRAA 178 (192)
Q Consensus 157 ~~~Sa~~~~gi~~~~~~i~~~~ 178 (192)
+.+||.+|.|+.+|++++.+.+
T Consensus 143 ~~ISA~Hg~Gi~dLld~v~~~l 164 (444)
T COG1160 143 VPISAEHGRGIGDLLDAVLELL 164 (444)
T ss_pred eEeehhhccCHHHHHHHHHhhc
Confidence 9999999999999999999997
No 194
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.87 E-value=1e-20 Score=153.00 Aligned_cols=154 Identities=12% Similarity=0.167 Sum_probs=110.3
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCccccccc----------cc
Q psy4710 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRP----------LS 73 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~----------~~ 73 (192)
+.++|+++|++|+|||||+|++.+........+.. +...+...+...+..+.+||+||..++..... .+
T Consensus 2 ~~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGv-Tve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~ 80 (772)
T PRK09554 2 KKLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGV-TVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY 80 (772)
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCc-eEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHH
Confidence 46799999999999999999999876543322222 22233334556677899999999877653211 12
Q ss_pred --CCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHc
Q psy4710 74 --YPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKI 151 (192)
Q Consensus 74 --~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (192)
.+.+|++++|+|+++.+.. + ++...+.+. +.|+++++||+|+.+. +.. ......+.+.+
T Consensus 81 l~~~~aD~vI~VvDat~ler~--l--~l~~ql~e~--giPvIvVlNK~Dl~~~------------~~i-~id~~~L~~~L 141 (772)
T PRK09554 81 ILSGDADLLINVVDASNLERN--L--YLTLQLLEL--GIPCIVALNMLDIAEK------------QNI-RIDIDALSARL 141 (772)
T ss_pred HhccCCCEEEEEecCCcchhh--H--HHHHHHHHc--CCCEEEEEEchhhhhc------------cCc-HHHHHHHHHHh
Confidence 2478999999999885432 1 344444444 7999999999998642 122 23456677777
Q ss_pred CCceEEEeccCCcCCHHHHHHHHHHHH
Q psy4710 152 NAFAYLECSAKSKEGVREVFETATRAA 178 (192)
Q Consensus 152 ~~~~~~~~Sa~~~~gi~~~~~~i~~~~ 178 (192)
+ .|++++||.+++|++++++.+.+..
T Consensus 142 G-~pVvpiSA~~g~GIdeL~~~I~~~~ 167 (772)
T PRK09554 142 G-CPVIPLVSTRGRGIEALKLAIDRHQ 167 (772)
T ss_pred C-CCEEEEEeecCCCHHHHHHHHHHhh
Confidence 7 5999999999999999999988765
No 195
>KOG1423|consensus
Probab=99.87 E-value=2.9e-21 Score=136.59 Aligned_cols=175 Identities=14% Similarity=0.143 Sum_probs=117.4
Q ss_pred ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCccc------------ccc
Q psy4710 3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYD------------RLR 70 (192)
Q Consensus 3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~------------~~~ 70 (192)
.+-++|+|+|.||+|||||.|.+.+.+....+....+++....-.+..+...+.++||||.-.-. ...
T Consensus 70 ~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~ 149 (379)
T KOG1423|consen 70 QKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQNP 149 (379)
T ss_pred ceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhhCH
Confidence 36789999999999999999999999988877666666655555566677899999999932211 112
Q ss_pred cccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhcc-CCCCCHHHHHHHHH
Q psy4710 71 PLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMK-QEPVKPEEGRAMAQ 149 (192)
Q Consensus 71 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 149 (192)
...+..+|.+++++|+++....-+ ...+..+..+ ...|-++|.||.|........-.+.... ...+. ....++.+
T Consensus 150 ~~a~q~AD~vvVv~Das~tr~~l~--p~vl~~l~~y-s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~-~~kl~v~~ 225 (379)
T KOG1423|consen 150 RDAAQNADCVVVVVDASATRTPLH--PRVLHMLEEY-SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELA-KLKLEVQE 225 (379)
T ss_pred HHHHhhCCEEEEEEeccCCcCccC--hHHHHHHHHH-hcCCceeeccchhcchhhhHHhhhHHhccccccc-hhhhhHHH
Confidence 234568999999999997432222 2344444443 3689999999999876544433322221 12222 11112222
Q ss_pred HcCCc----------------eEEEeccCCcCCHHHHHHHHHHHHhhh
Q psy4710 150 KINAF----------------AYLECSAKSKEGVREVFETATRAALQV 181 (192)
Q Consensus 150 ~~~~~----------------~~~~~Sa~~~~gi~~~~~~i~~~~~~~ 181 (192)
.+... .+|.+||++|+||+++.++|...+...
T Consensus 226 ~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~g 273 (379)
T KOG1423|consen 226 KFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPG 273 (379)
T ss_pred HhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCC
Confidence 22112 389999999999999999998877654
No 196
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.86 E-value=2.5e-21 Score=148.83 Aligned_cols=158 Identities=13% Similarity=0.110 Sum_probs=100.2
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCCCCcc------------------------------cCceeeeeeEEEEECCeEE
Q psy4710 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVY------------------------------VPTVFENYVADIEVDSKQV 53 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~ 53 (192)
..++|+++|++++|||||+++|+...-.... ...+.+.......+...+.
T Consensus 5 ~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~~ 84 (425)
T PRK12317 5 PHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDKY 84 (425)
T ss_pred CEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCCe
Confidence 5799999999999999999999853211100 0111222222234555678
Q ss_pred EEEEEeCCCCCcccccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhh
Q psy4710 54 ELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNK 133 (192)
Q Consensus 54 ~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 133 (192)
.+.+|||||+++|.......+..+|++++|+|+++...+......++...... ...|+++++||+|+...... .+
T Consensus 85 ~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~-~~~~iivviNK~Dl~~~~~~--~~-- 159 (425)
T PRK12317 85 YFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL-GINQLIVAINKMDAVNYDEK--RY-- 159 (425)
T ss_pred EEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc-CCCeEEEEEEccccccccHH--HH--
Confidence 89999999998887655566788999999999987322333222333333332 22469999999998652110 00
Q ss_pred ccCCCCCHHHHHHHHHHcC----CceEEEeccCCcCCHHHH
Q psy4710 134 MKQEPVKPEEGRAMAQKIN----AFAYLECSAKSKEGVREV 170 (192)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~----~~~~~~~Sa~~~~gi~~~ 170 (192)
....++...+....+ .++++++||++|+|+++.
T Consensus 160 ----~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~ 196 (425)
T PRK12317 160 ----EEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKK 196 (425)
T ss_pred ----HHHHHHHHHHHHhhCCCcCcceEEEeecccCCCcccc
Confidence 011233334444333 258999999999999873
No 197
>KOG1707|consensus
Probab=99.86 E-value=6.4e-22 Score=150.24 Aligned_cols=169 Identities=24% Similarity=0.423 Sum_probs=130.6
Q ss_pred cccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEE
Q psy4710 2 AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 81 (192)
Q Consensus 2 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i 81 (192)
....+||+++|+.|+|||||+.+++...+++.. |..-+.........-+.+..+++|++...+-+......++.+|++.
T Consensus 6 t~kdVRIvliGD~G~GKtSLImSL~~eef~~~V-P~rl~~i~IPadvtPe~vpt~ivD~ss~~~~~~~l~~EirkA~vi~ 84 (625)
T KOG1707|consen 6 TLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAV-PRRLPRILIPADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADVIC 84 (625)
T ss_pred CccceEEEEECCCCccHHHHHHHHHhhhccccc-cccCCccccCCccCcCcCceEEEecccccchhHHHHHHHhhcCEEE
Confidence 457899999999999999999999999988763 3333333333344556677999999876665555567789999999
Q ss_pred EEEECCChhhhhchhhhhHHHHhhhC---CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEE
Q psy4710 82 MCFSIDSPDSLENIPEKWTPEVKHFC---PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLE 158 (192)
Q Consensus 82 ~v~d~~~~~~~~~~~~~~~~~~~~~~---~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (192)
++|+.+++++++.+..+|++.++..+ .++|+|+|+||.|....... ........-+.+....-..++
T Consensus 85 lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~----------s~e~~~~pim~~f~EiEtcie 154 (625)
T KOG1707|consen 85 LVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENN----------SDEVNTLPIMIAFAEIETCIE 154 (625)
T ss_pred EEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCcccccc----------chhHHHHHHHHHhHHHHHHHh
Confidence 99999999999999999999999887 78999999999999875331 011112222223333346799
Q ss_pred eccCCcCCHHHHHHHHHHHHhhh
Q psy4710 159 CSAKSKEGVREVFETATRAALQV 181 (192)
Q Consensus 159 ~Sa~~~~gi~~~~~~i~~~~~~~ 181 (192)
|||++-.++.++|....+++..+
T Consensus 155 cSA~~~~n~~e~fYyaqKaVihP 177 (625)
T KOG1707|consen 155 CSALTLANVSELFYYAQKAVIHP 177 (625)
T ss_pred hhhhhhhhhHhhhhhhhheeecc
Confidence 99999999999999999888765
No 198
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.86 E-value=3e-21 Score=148.44 Aligned_cols=159 Identities=14% Similarity=0.121 Sum_probs=100.7
Q ss_pred ccceeEEEEcCCCCchhHHHHHHhhC--CCCCcc----------------------------cCceeeeeeEEEEECCeE
Q psy4710 3 AIRKKLVIVGDGACGKTCLLIVFSKD--QFPEVY----------------------------VPTVFENYVADIEVDSKQ 52 (192)
Q Consensus 3 ~~~~~i~v~G~~~~GKSsli~~l~~~--~~~~~~----------------------------~~~~~~~~~~~~~~~~~~ 52 (192)
...++|+++|+.++|||||+++|+.. ...... ...+.+.......+....
T Consensus 5 ~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~~ 84 (426)
T TIGR00483 5 KEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETDK 84 (426)
T ss_pred CceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccCC
Confidence 35789999999999999999999862 221100 000111112223455566
Q ss_pred EEEEEEeCCCCCcccccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhh
Q psy4710 53 VELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELN 132 (192)
Q Consensus 53 ~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~ 132 (192)
..+.+||+||+++|.......+..+|++++|+|++++++.......+...+.......|++|++||+|+..... ...
T Consensus 85 ~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~~~~iIVviNK~Dl~~~~~--~~~- 161 (426)
T TIGR00483 85 YEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLGINQLIVAINKMDSVNYDE--EEF- 161 (426)
T ss_pred eEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcCCCeEEEEEEChhccCccH--HHH-
Confidence 78999999999888766666678999999999999875322111111111222223457999999999964211 000
Q ss_pred hccCCCCCHHHHHHHHHHcC----CceEEEeccCCcCCHHH
Q psy4710 133 KMKQEPVKPEEGRAMAQKIN----AFAYLECSAKSKEGVRE 169 (192)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~Sa~~~~gi~~ 169 (192)
.....+...+.+..+ .++++++||++|.|+++
T Consensus 162 -----~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~ 197 (426)
T TIGR00483 162 -----EAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIK 197 (426)
T ss_pred -----HHHHHHHHHHHHHcCCCcccceEEEeeccccccccc
Confidence 011234445555543 26899999999999986
No 199
>KOG0076|consensus
Probab=99.86 E-value=3.3e-22 Score=129.93 Aligned_cols=161 Identities=24% Similarity=0.296 Sum_probs=119.5
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCC-------CCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCC
Q psy4710 4 IRKKLVIVGDGACGKTCLLIVFSKDQF-------PEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPD 76 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~ 76 (192)
..+.|+++|+.+||||||+.++..... +....++.+-+.- .++.....+.+||.+|++..+++|..++..
T Consensus 16 e~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig---~i~v~~~~l~fwdlgGQe~lrSlw~~yY~~ 92 (197)
T KOG0076|consen 16 EDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIG---TIEVCNAPLSFWDLGGQESLRSLWKKYYWL 92 (197)
T ss_pred hhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeec---ceeeccceeEEEEcCChHHHHHHHHHHHHH
Confidence 467899999999999999988755321 1111222222221 233346789999999999999999999999
Q ss_pred CCEEEEEEECCChhhhhchhhhhHHHHhh-hCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHH---HHc-
Q psy4710 77 TDVILMCFSIDSPDSLENIPEKWTPEVKH-FCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMA---QKI- 151 (192)
Q Consensus 77 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~- 151 (192)
++++|+++|+++++.++.....+...... ...+.|+++.+||.|+.+.-+ ..+..... +..
T Consensus 93 ~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~--------------~~El~~~~~~~e~~~ 158 (197)
T KOG0076|consen 93 AHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAME--------------AAELDGVFGLAELIP 158 (197)
T ss_pred hceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhh--------------HHHHHHHhhhhhhcC
Confidence 99999999999998888887666665544 346999999999999976432 22222221 111
Q ss_pred -CCceEEEeccCCcCCHHHHHHHHHHHHhhh
Q psy4710 152 -NAFAYLECSAKSKEGVREVFETATRAALQV 181 (192)
Q Consensus 152 -~~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~ 181 (192)
...++.++||.+|+||++...|+.+.+.+.
T Consensus 159 ~rd~~~~pvSal~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 159 RRDNPFQPVSALTGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred CccCccccchhhhcccHHHHHHHHHHHHhhc
Confidence 125889999999999999999999988776
No 200
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.86 E-value=4.2e-21 Score=132.51 Aligned_cols=150 Identities=19% Similarity=0.165 Sum_probs=96.8
Q ss_pred ceeEEEEcCCCCchhHHHHHHhhCCCC------Ccc---------cCceeeeeeEEEEECCeEEEEEEEeCCCCCccccc
Q psy4710 5 RKKLVIVGDGACGKTCLLIVFSKDQFP------EVY---------VPTVFENYVADIEVDSKQVELALWDTAGQEDYDRL 69 (192)
Q Consensus 5 ~~~i~v~G~~~~GKSsli~~l~~~~~~------~~~---------~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~ 69 (192)
+++|+++|+.++|||||+++|+..... ..+ .....+.......+..++..+.++||||+..|...
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~ 81 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN 81 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence 579999999999999999999864110 000 01111122223344556678899999999888777
Q ss_pred ccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCc-EEEEeecccccCCccchhhhhhccCCCCCHHHHHHHH
Q psy4710 70 RPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVP-IILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMA 148 (192)
Q Consensus 70 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (192)
....+..+|++++|+|+..+ .......++..+... +.| +|+++||+|+.......+ ....+...+.
T Consensus 82 ~~~~~~~~D~~ilVvda~~g--~~~~~~~~~~~~~~~--~~~~iIvviNK~D~~~~~~~~~---------~~~~~i~~~l 148 (195)
T cd01884 82 MITGAAQMDGAILVVSATDG--PMPQTREHLLLARQV--GVPYIVVFLNKADMVDDEELLE---------LVEMEVRELL 148 (195)
T ss_pred HHHHhhhCCEEEEEEECCCC--CcHHHHHHHHHHHHc--CCCcEEEEEeCCCCCCcHHHHH---------HHHHHHHHHH
Confidence 77788899999999999875 222223344444443 676 789999999863211100 0112333443
Q ss_pred HHcC----CceEEEeccCCcCCH
Q psy4710 149 QKIN----AFAYLECSAKSKEGV 167 (192)
Q Consensus 149 ~~~~----~~~~~~~Sa~~~~gi 167 (192)
...+ .++++++||++|.|+
T Consensus 149 ~~~g~~~~~v~iipiSa~~g~n~ 171 (195)
T cd01884 149 SKYGFDGDNTPIVRGSALKALEG 171 (195)
T ss_pred HHhcccccCCeEEEeeCccccCC
Confidence 3332 368999999999885
No 201
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.86 E-value=1.4e-20 Score=148.62 Aligned_cols=170 Identities=21% Similarity=0.263 Sum_probs=105.1
Q ss_pred CcccceeEEEEcCCCCchhHHHHHHhhCCCCCcccC----ceeeeeeEEEEE----CCeE-----E-----EEEEEeCCC
Q psy4710 1 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVP----TVFENYVADIEV----DSKQ-----V-----ELALWDTAG 62 (192)
Q Consensus 1 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~----~~~~~~~~~~~~----~~~~-----~-----~~~l~D~~g 62 (192)
|..++..|+++|++++|||||+++|.+......... +.+.... .... .+.. . .+.+|||||
T Consensus 2 ~~~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG 80 (586)
T PRK04004 2 KKLRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEV-PIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPG 80 (586)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeec-cccccccccceeccccccccccCCEEEEECCC
Confidence 567889999999999999999999987654332221 1111111 0000 0110 1 268999999
Q ss_pred CCcccccccccCCCCCEEEEEEECCC---hhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchh---hh-----
Q psy4710 63 QEDYDRLRPLSYPDTDVILMCFSIDS---PDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIK---EL----- 131 (192)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~i~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~---~~----- 131 (192)
++.|...+...+..+|++++|+|+++ ++++..+ ..+.. .+.|+++++||+|+........ ..
T Consensus 81 ~e~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i-----~~~~~--~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~ 153 (586)
T PRK04004 81 HEAFTNLRKRGGALADIAILVVDINEGFQPQTIEAI-----NILKR--RKTPFVVAANKIDRIPGWKSTEDAPFLESIEK 153 (586)
T ss_pred hHHHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHH-----HHHHH--cCCCEEEEEECcCCchhhhhhcCchHHHHHhh
Confidence 99999888878888999999999987 3343333 22332 2799999999999853111000 00
Q ss_pred -----------------hhccCCCCCHHHHHHHHHHcCCceEEEeccCCcCCHHHHHHHHHHHH
Q psy4710 132 -----------------NKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAA 178 (192)
Q Consensus 132 -----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~~ 178 (192)
..+.......+......+..+..+++++||++|+|++++++.+...+
T Consensus 154 ~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~ 217 (586)
T PRK04004 154 QSQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLA 217 (586)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHHH
Confidence 00000111111111111112346899999999999999999886533
No 202
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.86 E-value=7.3e-21 Score=150.64 Aligned_cols=160 Identities=19% Similarity=0.162 Sum_probs=109.4
Q ss_pred ceeEEEEcCCCCchhHHHHHHhhCC--CCCc-----cc------Cc-eeeeeeEE--EEE---CCeEEEEEEEeCCCCCc
Q psy4710 5 RKKLVIVGDGACGKTCLLIVFSKDQ--FPEV-----YV------PT-VFENYVAD--IEV---DSKQVELALWDTAGQED 65 (192)
Q Consensus 5 ~~~i~v~G~~~~GKSsli~~l~~~~--~~~~-----~~------~~-~~~~~~~~--~~~---~~~~~~~~l~D~~g~~~ 65 (192)
-.+++++|+.++|||||+.+|+... .... .. .. +.+..... +.+ ++..+.+.+|||||+.+
T Consensus 7 iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~d 86 (600)
T PRK05433 7 IRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVD 86 (600)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHH
Confidence 3489999999999999999998632 1110 00 00 01111111 122 44578999999999999
Q ss_pred ccccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHH
Q psy4710 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGR 145 (192)
Q Consensus 66 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (192)
|...+...++.+|++|+|+|++++...+.. ..|..... .+.|+++|+||+|+..... .....
T Consensus 87 F~~~v~~sl~~aD~aILVVDas~gv~~qt~-~~~~~~~~---~~lpiIvViNKiDl~~a~~--------------~~v~~ 148 (600)
T PRK05433 87 FSYEVSRSLAACEGALLVVDASQGVEAQTL-ANVYLALE---NDLEIIPVLNKIDLPAADP--------------ERVKQ 148 (600)
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCCCHHHH-HHHHHHHH---CCCCEEEEEECCCCCcccH--------------HHHHH
Confidence 998888899999999999999986444433 23433332 2789999999999854211 11122
Q ss_pred HHHHHcCC--ceEEEeccCCcCCHHHHHHHHHHHHhhhc
Q psy4710 146 AMAQKINA--FAYLECSAKSKEGVREVFETATRAALQVK 182 (192)
Q Consensus 146 ~~~~~~~~--~~~~~~Sa~~~~gi~~~~~~i~~~~~~~~ 182 (192)
++.+.++. .+++++||++|.|+++++++|.+.+..+.
T Consensus 149 ei~~~lg~~~~~vi~iSAktG~GI~~Ll~~I~~~lp~P~ 187 (600)
T PRK05433 149 EIEDVIGIDASDAVLVSAKTGIGIEEVLEAIVERIPPPK 187 (600)
T ss_pred HHHHHhCCCcceEEEEecCCCCCHHHHHHHHHHhCcccc
Confidence 33333332 24899999999999999999998887654
No 203
>KOG0074|consensus
Probab=99.86 E-value=3e-21 Score=121.39 Aligned_cols=164 Identities=20% Similarity=0.294 Sum_probs=120.8
Q ss_pred ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEE
Q psy4710 3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 82 (192)
Q Consensus 3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 82 (192)
.+++||+++|..++|||||+.+|.......- .|+.+-+ .+.+.+ .+.+.+.+||++|+...+..|.+++.+.|++|+
T Consensus 15 ~rEirilllGldnAGKTT~LKqL~sED~~hl-tpT~GFn-~k~v~~-~g~f~LnvwDiGGqr~IRpyWsNYyenvd~lIy 91 (185)
T KOG0074|consen 15 RREIRILLLGLDNAGKTTFLKQLKSEDPRHL-TPTNGFN-TKKVEY-DGTFHLNVWDIGGQRGIRPYWSNYYENVDGLIY 91 (185)
T ss_pred cceEEEEEEecCCCcchhHHHHHccCChhhc-cccCCcc-eEEEee-cCcEEEEEEecCCccccchhhhhhhhccceEEE
Confidence 5799999999999999999999987665433 2222222 333333 345789999999999999999999999999999
Q ss_pred EEECCChhhhhchhhhhHHHHhhh-CCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEecc
Q psy4710 83 CFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSA 161 (192)
Q Consensus 83 v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 161 (192)
|+|.+|...++++.+.+..++... ....|+.|..||.|+..+-...+....++.-. + ....+.+-++|+
T Consensus 92 VIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~eeia~klnl~~--------l--rdRswhIq~csa 161 (185)
T KOG0074|consen 92 VIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKVEEIALKLNLAG--------L--RDRSWHIQECSA 161 (185)
T ss_pred EEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcchHHHHHhcchhh--------h--hhceEEeeeCcc
Confidence 999999888888877676666543 35799999999999977533322221111110 0 111267789999
Q ss_pred CCcCCHHHHHHHHHHHHh
Q psy4710 162 KSKEGVREVFETATRAAL 179 (192)
Q Consensus 162 ~~~~gi~~~~~~i~~~~~ 179 (192)
..++|+..-.+|+.....
T Consensus 162 ls~eg~~dg~~wv~sn~~ 179 (185)
T KOG0074|consen 162 LSLEGSTDGSDWVQSNPE 179 (185)
T ss_pred ccccCccCcchhhhcCCC
Confidence 999999998888876544
No 204
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.85 E-value=3e-20 Score=122.41 Aligned_cols=158 Identities=20% Similarity=0.260 Sum_probs=116.0
Q ss_pred cccceeEEEEcCCCCchhHHHHHHhhCCCCCcc--------cC---ceeeeeeEEEEECCeEEEEEEEeCCCCCcccccc
Q psy4710 2 AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVY--------VP---TVFENYVADIEVDSKQVELALWDTAGQEDYDRLR 70 (192)
Q Consensus 2 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~--------~~---~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~ 70 (192)
..++.||+|.|+.++||||++.++......... .. ++.....-.+. .+++..+.+++||||++|...|
T Consensus 7 k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~-~~~~~~v~LfgtPGq~RF~fm~ 85 (187)
T COG2229 7 KMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIE-LDEDTGVHLFGTPGQERFKFMW 85 (187)
T ss_pred cccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceE-EcCcceEEEecCCCcHHHHHHH
Confidence 457899999999999999999999987742221 11 11111111111 2234678999999999999999
Q ss_pred cccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHH
Q psy4710 71 PLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQK 150 (192)
Q Consensus 71 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (192)
....+++.++|+++|.+.+..+ +. ..++..+....+ .|++|++||.|+.... +.+..+++...
T Consensus 86 ~~l~~ga~gaivlVDss~~~~~-~a-~~ii~f~~~~~~-ip~vVa~NK~DL~~a~--------------ppe~i~e~l~~ 148 (187)
T COG2229 86 EILSRGAVGAIVLVDSSRPITF-HA-EEIIDFLTSRNP-IPVVVAINKQDLFDAL--------------PPEKIREALKL 148 (187)
T ss_pred HHHhCCcceEEEEEecCCCcch-HH-HHHHHHHhhccC-CCEEEEeeccccCCCC--------------CHHHHHHHHHh
Confidence 9999999999999999998777 32 355555554422 9999999999998743 34445444433
Q ss_pred c-CCceEEEeccCCcCCHHHHHHHHHHH
Q psy4710 151 I-NAFAYLECSAKSKEGVREVFETATRA 177 (192)
Q Consensus 151 ~-~~~~~~~~Sa~~~~gi~~~~~~i~~~ 177 (192)
- -..|+++.+|.+++|..+.++.+..+
T Consensus 149 ~~~~~~vi~~~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 149 ELLSVPVIEIDATEGEGARDQLDVLLLK 176 (187)
T ss_pred ccCCCceeeeecccchhHHHHHHHHHhh
Confidence 3 24799999999999999999988776
No 205
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.85 E-value=1.6e-21 Score=136.45 Aligned_cols=153 Identities=16% Similarity=0.121 Sum_probs=93.5
Q ss_pred eEEEEcCCCCchhHHHHHHhhCCCCCcc-c-----------------------------CceeeeeeEEEEECCeEEEEE
Q psy4710 7 KLVIVGDGACGKTCLLIVFSKDQFPEVY-V-----------------------------PTVFENYVADIEVDSKQVELA 56 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~~~~~~~~-~-----------------------------~~~~~~~~~~~~~~~~~~~~~ 56 (192)
||+++|++|+|||||+++|+...-.... . ....+.......+...+..+.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 6899999999999999999764321110 0 011111111223344556889
Q ss_pred EEeCCCCCcccccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccC
Q psy4710 57 LWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQ 136 (192)
Q Consensus 57 l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~ 136 (192)
+|||||+.+|.......++.+|++|+|+|++++.. ............. ...++|+|+||+|+...... ...
T Consensus 81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~--~~~~~~~~~~~~~-~~~~iIvviNK~D~~~~~~~--~~~---- 151 (208)
T cd04166 81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVL--EQTRRHSYILSLL-GIRHVVVAVNKMDLVDYSEE--VFE---- 151 (208)
T ss_pred EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCcc--HhHHHHHHHHHHc-CCCcEEEEEEchhcccCCHH--HHH----
Confidence 99999998876666667789999999999987521 1111222223222 12457889999998642110 000
Q ss_pred CCCCHHHHHHHHHHcC--CceEEEeccCCcCCHHHH
Q psy4710 137 EPVKPEEGRAMAQKIN--AFAYLECSAKSKEGVREV 170 (192)
Q Consensus 137 ~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~gi~~~ 170 (192)
....+...+...++ ..+++++||+++.|+++.
T Consensus 152 --~i~~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~ 185 (208)
T cd04166 152 --EIVADYLAFAAKLGIEDITFIPISALDGDNVVSR 185 (208)
T ss_pred --HHHHHHHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence 01123344444444 246899999999999753
No 206
>KOG3883|consensus
Probab=99.85 E-value=9e-20 Score=116.29 Aligned_cols=166 Identities=24% Similarity=0.336 Sum_probs=131.9
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCCCCc--ccCceeeeeeEEEEECC-eEEEEEEEeCCCCCcc-cccccccCCCCCE
Q psy4710 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEV--YVPTVFENYVADIEVDS-KQVELALWDTAGQEDY-DRLRPLSYPDTDV 79 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~l~D~~g~~~~-~~~~~~~~~~~~~ 79 (192)
.-.||+|+|..++|||+++.+++.+..... ..++..+.+...++.+. -.-.+.++||.|.... ..+-.++++-+|+
T Consensus 8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aDa 87 (198)
T KOG3883|consen 8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFADA 87 (198)
T ss_pred cceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCce
Confidence 457999999999999999999887765433 36666777766554433 3346899999997766 5566788999999
Q ss_pred EEEEEECCChhhhhchhhhhHHHHhhhC--CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEE
Q psy4710 80 ILMCFSIDSPDSLENIPEKWTPEVKHFC--PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYL 157 (192)
Q Consensus 80 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (192)
+++||+..+++||+.+ +.+...+.+.. +.+|+++++||.|+.+ ++.+....++.|++.-. +.++
T Consensus 88 fVLVYs~~d~eSf~rv-~llKk~Idk~KdKKEvpiVVLaN~rdr~~------------p~~vd~d~A~~Wa~rEk-vkl~ 153 (198)
T KOG3883|consen 88 FVLVYSPMDPESFQRV-ELLKKEIDKHKDKKEVPIVVLANKRDRAE------------PREVDMDVAQIWAKREK-VKLW 153 (198)
T ss_pred EEEEecCCCHHHHHHH-HHHHHHHhhccccccccEEEEechhhccc------------chhcCHHHHHHHHhhhh-eeEE
Confidence 9999999999999988 35666665533 4789999999999986 45666777777776655 6899
Q ss_pred EeccCCcCCHHHHHHHHHHHHhhhcc
Q psy4710 158 ECSAKSKEGVREVFETATRAALQVKK 183 (192)
Q Consensus 158 ~~Sa~~~~gi~~~~~~i~~~~~~~~~ 183 (192)
++++.+...+-+-|-.+...+.....
T Consensus 154 eVta~dR~sL~epf~~l~~rl~~pqs 179 (198)
T KOG3883|consen 154 EVTAMDRPSLYEPFTYLASRLHQPQS 179 (198)
T ss_pred EEEeccchhhhhHHHHHHHhccCCcc
Confidence 99999999999999999998877654
No 207
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.85 E-value=1.6e-20 Score=148.60 Aligned_cols=145 Identities=13% Similarity=0.190 Sum_probs=100.7
Q ss_pred cCCCCchhHHHHHHhhCCCCCcccCceeee-eeEEEEECCeEEEEEEEeCCCCCccccc------cccc--CCCCCEEEE
Q psy4710 12 GDGACGKTCLLIVFSKDQFPEVYVPTVFEN-YVADIEVDSKQVELALWDTAGQEDYDRL------RPLS--YPDTDVILM 82 (192)
Q Consensus 12 G~~~~GKSsli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~D~~g~~~~~~~------~~~~--~~~~~~~i~ 82 (192)
|++|+|||||+|++.+..+.....++.+.. ....+..+ +..+.+|||||+.++... ...+ .+.+|++++
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~--~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~ 78 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQ--GEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN 78 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEEC--CeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence 899999999999999887644333333322 22233333 346899999998876553 2222 247899999
Q ss_pred EEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccC
Q psy4710 83 CFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAK 162 (192)
Q Consensus 83 v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 162 (192)
|+|.++.+.. ..+...+.+. +.|+++++||+|+.+. +... .+.+.+.+.++ .+++++||+
T Consensus 79 VvDat~ler~----l~l~~ql~~~--~~PiIIVlNK~Dl~~~------------~~i~-~d~~~L~~~lg-~pvv~tSA~ 138 (591)
T TIGR00437 79 VVDASNLERN----LYLTLQLLEL--GIPMILALNLVDEAEK------------KGIR-IDEEKLEERLG-VPVVPTSAT 138 (591)
T ss_pred EecCCcchhh----HHHHHHHHhc--CCCEEEEEehhHHHHh------------CCCh-hhHHHHHHHcC-CCEEEEECC
Confidence 9999875321 1222233332 7999999999998652 1222 33566777777 599999999
Q ss_pred CcCCHHHHHHHHHHHH
Q psy4710 163 SKEGVREVFETATRAA 178 (192)
Q Consensus 163 ~~~gi~~~~~~i~~~~ 178 (192)
+|+|++++++.+.+..
T Consensus 139 tg~Gi~eL~~~i~~~~ 154 (591)
T TIGR00437 139 EGRGIERLKDAIRKAI 154 (591)
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999999998764
No 208
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.85 E-value=3.9e-20 Score=131.24 Aligned_cols=151 Identities=20% Similarity=0.147 Sum_probs=97.3
Q ss_pred eEEEEcCCCCchhHHHHHHhhCCCCCcccCcee-eeeeEEEEECCeEEEEEEEeCCCCCcccc-------cccccCCCCC
Q psy4710 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVF-ENYVADIEVDSKQVELALWDTAGQEDYDR-------LRPLSYPDTD 78 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~-------~~~~~~~~~~ 78 (192)
+|+++|++|+|||||+++|.+........+.++ ....-.+.+ .+..+++||+||...... .....++++|
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~--~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad 79 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEY--KGAKIQLLDLPGIIEGAADGKGRGRQVIAVARTAD 79 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEE--CCeEEEEEECCCcccccccchhHHHHHHHhhccCC
Confidence 789999999999999999998764332222222 111112223 456899999999754321 2234678999
Q ss_pred EEEEEEECCChhh-hhchhhh----------------------------------------hHHHH--------------
Q psy4710 79 VILMCFSIDSPDS-LENIPEK----------------------------------------WTPEV-------------- 103 (192)
Q Consensus 79 ~~i~v~d~~~~~~-~~~~~~~----------------------------------------~~~~~-------------- 103 (192)
++++|+|+++++. ...+.+. ....+
T Consensus 80 ~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~ 159 (233)
T cd01896 80 LILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIRE 159 (233)
T ss_pred EEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEcc
Confidence 9999999987642 2211100 00111
Q ss_pred -----------hhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccCCcCCHHHHHH
Q psy4710 104 -----------KHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFE 172 (192)
Q Consensus 104 -----------~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~ 172 (192)
.......|+++|+||+|+.. .++...+++. .+++++||+++.|++++++
T Consensus 160 ~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~-----------------~~~~~~~~~~---~~~~~~SA~~g~gi~~l~~ 219 (233)
T cd01896 160 DITVDDLIDVIEGNRVYIPCLYVYNKIDLIS-----------------IEELDLLARQ---PNSVVISAEKGLNLDELKE 219 (233)
T ss_pred CCCHHHHHHHHhCCceEeeEEEEEECccCCC-----------------HHHHHHHhcC---CCEEEEcCCCCCCHHHHHH
Confidence 11112369999999999854 2223334332 3688999999999999999
Q ss_pred HHHHHHh
Q psy4710 173 TATRAAL 179 (192)
Q Consensus 173 ~i~~~~~ 179 (192)
.+.+.+-
T Consensus 220 ~i~~~L~ 226 (233)
T cd01896 220 RIWDKLG 226 (233)
T ss_pred HHHHHhC
Confidence 9988653
No 209
>PRK10218 GTP-binding protein; Provisional
Probab=99.85 E-value=2.7e-20 Score=146.95 Aligned_cols=165 Identities=13% Similarity=0.114 Sum_probs=113.3
Q ss_pred cccceeEEEEcCCCCchhHHHHHHhh--CCCCCccc-------------CceeeeeeEEEEECCeEEEEEEEeCCCCCcc
Q psy4710 2 AAIRKKLVIVGDGACGKTCLLIVFSK--DQFPEVYV-------------PTVFENYVADIEVDSKQVELALWDTAGQEDY 66 (192)
Q Consensus 2 ~~~~~~i~v~G~~~~GKSsli~~l~~--~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~ 66 (192)
-..-.+|+++|+.++|||||+++|+. +.+..... ....+.......+...+..+.+|||||+.+|
T Consensus 2 ~~~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df 81 (607)
T PRK10218 2 IEKLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADF 81 (607)
T ss_pred CCCceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchh
Confidence 34456899999999999999999997 33322110 1111222333455667789999999999999
Q ss_pred cccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHH
Q psy4710 67 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRA 146 (192)
Q Consensus 67 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (192)
...+...++.+|++|+|+|+.+....+. ..++...... +.|.++++||+|+........ ..+...
T Consensus 82 ~~~v~~~l~~aDg~ILVVDa~~G~~~qt--~~~l~~a~~~--gip~IVviNKiD~~~a~~~~v-----------l~ei~~ 146 (607)
T PRK10218 82 GGEVERVMSMVDSVLLVVDAFDGPMPQT--RFVTKKAFAY--GLKPIVVINKVDRPGARPDWV-----------VDQVFD 146 (607)
T ss_pred HHHHHHHHHhCCEEEEEEecccCccHHH--HHHHHHHHHc--CCCEEEEEECcCCCCCchhHH-----------HHHHHH
Confidence 9999999999999999999987532222 2333333333 789999999999875432110 011111
Q ss_pred HH-------HHcCCceEEEeccCCcC----------CHHHHHHHHHHHHhhhc
Q psy4710 147 MA-------QKINAFAYLECSAKSKE----------GVREVFETATRAALQVK 182 (192)
Q Consensus 147 ~~-------~~~~~~~~~~~Sa~~~~----------gi~~~~~~i~~~~~~~~ 182 (192)
+. .+.. +|++.+||++|. |+..+++.|...+..+.
T Consensus 147 l~~~l~~~~~~~~-~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P~ 198 (607)
T PRK10218 147 LFVNLDATDEQLD-FPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAPD 198 (607)
T ss_pred HHhccCccccccC-CCEEEeEhhcCcccCCccccccchHHHHHHHHHhCCCCC
Confidence 11 1122 689999999998 68999999999887664
No 210
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.85 E-value=1.5e-20 Score=121.13 Aligned_cols=136 Identities=22% Similarity=0.292 Sum_probs=94.6
Q ss_pred eEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCC----CcccccccccCCCCCEEEE
Q psy4710 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQ----EDYDRLRPLSYPDTDVILM 82 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~----~~~~~~~~~~~~~~~~~i~ 82 (192)
||+++|+.|||||||+++|.+........+.. .+. =.++||||. ..+..-......++|.+++
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~~~~KTq~i--------~~~-----~~~IDTPGEyiE~~~~y~aLi~ta~dad~V~l 69 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEIRYKKTQAI--------EYY-----DNTIDTPGEYIENPRFYHALIVTAQDADVVLL 69 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCCCcCcccee--------Eec-----ccEEECChhheeCHHHHHHHHHHHhhCCEEEE
Confidence 89999999999999999999876533211111 121 134799993 2233333344568999999
Q ss_pred EEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccC
Q psy4710 83 CFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAK 162 (192)
Q Consensus 83 v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 162 (192)
+.|++++.+.-. ..+...+ +.|+|-|+||+|+..+. ...+...++.+.-+.-++|++|+.
T Consensus 70 l~dat~~~~~~p--P~fa~~f-----~~pvIGVITK~Dl~~~~-------------~~i~~a~~~L~~aG~~~if~vS~~ 129 (143)
T PF10662_consen 70 LQDATEPRSVFP--PGFASMF-----NKPVIGVITKIDLPSDD-------------ANIERAKKWLKNAGVKEIFEVSAV 129 (143)
T ss_pred EecCCCCCccCC--chhhccc-----CCCEEEEEECccCccch-------------hhHHHHHHHHHHcCCCCeEEEECC
Confidence 999998743221 1233222 58999999999998421 234455566666666678999999
Q ss_pred CcCCHHHHHHHHH
Q psy4710 163 SKEGVREVFETAT 175 (192)
Q Consensus 163 ~~~gi~~~~~~i~ 175 (192)
+|+|+++|.++|.
T Consensus 130 ~~eGi~eL~~~L~ 142 (143)
T PF10662_consen 130 TGEGIEELKDYLE 142 (143)
T ss_pred CCcCHHHHHHHHh
Confidence 9999999999874
No 211
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.84 E-value=1.2e-20 Score=149.00 Aligned_cols=160 Identities=16% Similarity=0.154 Sum_probs=109.6
Q ss_pred eEEEEcCCCCchhHHHHHHhhC--CCCCccc-------------CceeeeeeEEEEECCeEEEEEEEeCCCCCccccccc
Q psy4710 7 KLVIVGDGACGKTCLLIVFSKD--QFPEVYV-------------PTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRP 71 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~~--~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~ 71 (192)
+|+++|+.++|||||+++|+.. .+..... ....+.......+...+..+.+|||||+.+|...+.
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev~ 82 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEVE 82 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHHH
Confidence 7999999999999999999863 2222110 001112222234455668899999999999988888
Q ss_pred ccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHH---
Q psy4710 72 LSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMA--- 148 (192)
Q Consensus 72 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 148 (192)
..++.+|++++|+|+.+.. ......|+..+... +.|+++++||+|+....... + ..+...+.
T Consensus 83 ~~l~~aD~alLVVDa~~G~--~~qT~~~l~~a~~~--~ip~IVviNKiD~~~a~~~~----------v-~~ei~~l~~~~ 147 (594)
T TIGR01394 83 RVLGMVDGVLLLVDASEGP--MPQTRFVLKKALEL--GLKPIVVINKIDRPSARPDE----------V-VDEVFDLFAEL 147 (594)
T ss_pred HHHHhCCEEEEEEeCCCCC--cHHHHHHHHHHHHC--CCCEEEEEECCCCCCcCHHH----------H-HHHHHHHHHhh
Confidence 8899999999999998742 22223455555544 78999999999986532110 0 01111111
Q ss_pred ----HHcCCceEEEeccCCcC----------CHHHHHHHHHHHHhhhc
Q psy4710 149 ----QKINAFAYLECSAKSKE----------GVREVFETATRAALQVK 182 (192)
Q Consensus 149 ----~~~~~~~~~~~Sa~~~~----------gi~~~~~~i~~~~~~~~ 182 (192)
+++. +|++++||++|. |++.+|+.|.+.+....
T Consensus 148 g~~~e~l~-~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P~ 194 (594)
T TIGR01394 148 GADDEQLD-FPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAPK 194 (594)
T ss_pred cccccccc-CcEEechhhcCcccccCcccccCHHHHHHHHHHhCCCCC
Confidence 1223 689999999995 89999999999887654
No 212
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.84 E-value=3.2e-20 Score=130.73 Aligned_cols=166 Identities=15% Similarity=0.185 Sum_probs=100.6
Q ss_pred eEEEEcCCCCchhHHHHHHhhCCCCCcccCcee--------------eeeeE-EE----------------------EEC
Q psy4710 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVF--------------ENYVA-DI----------------------EVD 49 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~--------------~~~~~-~~----------------------~~~ 49 (192)
||+++|+.++|||||+++|..+.+......... ..... .+ .+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 689999999999999999998666442211100 00000 00 011
Q ss_pred CeEEEEEEEeCCCCCcccccccccCC--CCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccc
Q psy4710 50 SKQVELALWDTAGQEDYDRLRPLSYP--DTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNT 127 (192)
Q Consensus 50 ~~~~~~~l~D~~g~~~~~~~~~~~~~--~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~ 127 (192)
..+..+.++|+||++.|.......+. .+|++++|+|+..+. ......++..+... +.|+++++||+|+.+....
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~--~~~d~~~l~~l~~~--~ip~ivvvNK~D~~~~~~~ 156 (224)
T cd04165 81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGI--IGMTKEHLGLALAL--NIPVFVVVTKIDLAPANIL 156 (224)
T ss_pred eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCC--cHHHHHHHHHHHHc--CCCEEEEEECccccCHHHH
Confidence 22457899999999888665554443 689999999988753 33333555555554 7899999999998653222
Q ss_pred hhhhhhccCCC------------CCHHHHHHHHH---HcCCceEEEeccCCcCCHHHHHHHHHH
Q psy4710 128 IKELNKMKQEP------------VKPEEGRAMAQ---KINAFAYLECSAKSKEGVREVFETATR 176 (192)
Q Consensus 128 ~~~~~~~~~~~------------~~~~~~~~~~~---~~~~~~~~~~Sa~~~~gi~~~~~~i~~ 176 (192)
......+.... .+.+.....+. .....|+|.+||.+|+|+++++..|..
T Consensus 157 ~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~ 220 (224)
T cd04165 157 QETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL 220 (224)
T ss_pred HHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence 11111110000 00000000111 112358999999999999999988753
No 213
>PRK12736 elongation factor Tu; Reviewed
Probab=99.83 E-value=3.9e-20 Score=140.67 Aligned_cols=167 Identities=16% Similarity=0.160 Sum_probs=107.5
Q ss_pred ccceeEEEEcCCCCchhHHHHHHhhCCCCC------------c---ccCceeeeeeEEEEECCeEEEEEEEeCCCCCccc
Q psy4710 3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPE------------V---YVPTVFENYVADIEVDSKQVELALWDTAGQEDYD 67 (192)
Q Consensus 3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~------------~---~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~ 67 (192)
...++|+++|+.++|||||+++|++..... . ......+.......+......+.++||||+++|.
T Consensus 10 k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f~ 89 (394)
T PRK12736 10 KPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADYV 89 (394)
T ss_pred CCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHHH
Confidence 357899999999999999999998632110 0 0011111222233444556678999999999887
Q ss_pred ccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCc-EEEEeecccccCCccchhhhhhccCCCCCHHHHHH
Q psy4710 68 RLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVP-IILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRA 146 (192)
Q Consensus 68 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (192)
......+..+|++++|+|+.++.. .....++..+... +.| +|+++||+|+.......+ ....+...
T Consensus 90 ~~~~~~~~~~d~~llVvd~~~g~~--~~t~~~~~~~~~~--g~~~~IvviNK~D~~~~~~~~~---------~i~~~i~~ 156 (394)
T PRK12736 90 KNMITGAAQMDGAILVVAATDGPM--PQTREHILLARQV--GVPYLVVFLNKVDLVDDEELLE---------LVEMEVRE 156 (394)
T ss_pred HHHHHHHhhCCEEEEEEECCCCCc--hhHHHHHHHHHHc--CCCEEEEEEEecCCcchHHHHH---------HHHHHHHH
Confidence 766667778999999999987422 2222344444443 678 678999999864211100 01123334
Q ss_pred HHHHcC----CceEEEeccCCcC--------CHHHHHHHHHHHHhhhc
Q psy4710 147 MAQKIN----AFAYLECSAKSKE--------GVREVFETATRAALQVK 182 (192)
Q Consensus 147 ~~~~~~----~~~~~~~Sa~~~~--------gi~~~~~~i~~~~~~~~ 182 (192)
+....+ ..|++++||+++. ++.++++.+...+....
T Consensus 157 ~l~~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp~~~ 204 (394)
T PRK12736 157 LLSEYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIPTPE 204 (394)
T ss_pred HHHHhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCCCCC
Confidence 433333 2589999999983 68889988888765443
No 214
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.83 E-value=4.7e-20 Score=146.28 Aligned_cols=160 Identities=14% Similarity=0.097 Sum_probs=101.8
Q ss_pred eEEEEcCCCCchhHHHHHHhhCC---CCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEE
Q psy4710 7 KLVIVGDGACGKTCLLIVFSKDQ---FPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMC 83 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v 83 (192)
-|+++|+.++|||||+++|.+.. +.+......+............+..+.+||+||+++|.......+..+|++++|
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lLV 81 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLSNMLAGVGGIDHALLV 81 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHHHHHHHHHHhhcCCEEEEE
Confidence 48899999999999999998643 222221222211111111111234589999999999877777778899999999
Q ss_pred EECCChhhhhchhhhhHHHHhhhCCCCc-EEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcC--CceEEEec
Q psy4710 84 FSIDSPDSLENIPEKWTPEVKHFCPNVP-IILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKIN--AFAYLECS 160 (192)
Q Consensus 84 ~d~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~S 160 (192)
+|+.++- .......+..+... +.| ++||+||+|+.+.... . ...++..++....+ ..+++++|
T Consensus 82 Vda~eg~--~~qT~ehl~il~~l--gi~~iIVVlNKiDlv~~~~~-~---------~v~~ei~~~l~~~~~~~~~ii~VS 147 (614)
T PRK10512 82 VACDDGV--MAQTREHLAILQLT--GNPMLTVALTKADRVDEARI-A---------EVRRQVKAVLREYGFAEAKLFVTA 147 (614)
T ss_pred EECCCCC--cHHHHHHHHHHHHc--CCCeEEEEEECCccCCHHHH-H---------HHHHHHHHHHHhcCCCCCcEEEEe
Confidence 9998742 11111223333332 456 5799999998642110 0 01223334433332 36899999
Q ss_pred cCCcCCHHHHHHHHHHHHhh
Q psy4710 161 AKSKEGVREVFETATRAALQ 180 (192)
Q Consensus 161 a~~~~gi~~~~~~i~~~~~~ 180 (192)
|++|+|++++++.|......
T Consensus 148 A~tG~gI~~L~~~L~~~~~~ 167 (614)
T PRK10512 148 ATEGRGIDALREHLLQLPER 167 (614)
T ss_pred CCCCCCCHHHHHHHHHhhcc
Confidence 99999999999999876544
No 215
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.83 E-value=1.5e-19 Score=130.58 Aligned_cols=114 Identities=20% Similarity=0.067 Sum_probs=77.9
Q ss_pred eEEEEcCCCCchhHHHHHHhhCCCCC-----cc------------cCceeeeeeEEEEECCeEEEEEEEeCCCCCccccc
Q psy4710 7 KLVIVGDGACGKTCLLIVFSKDQFPE-----VY------------VPTVFENYVADIEVDSKQVELALWDTAGQEDYDRL 69 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~~~~~~-----~~------------~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~ 69 (192)
+|+++|++++|||||+++|+...-.. .. .....+.......+...+..+.+|||||+.+|...
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~ 80 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE 80 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence 58999999999999999997421100 00 00011111112233345678999999999888888
Q ss_pred ccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCC
Q psy4710 70 RPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRND 124 (192)
Q Consensus 70 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 124 (192)
+...++.+|++++|+|+.+.. +.....++..+... ++|+++++||+|+.+.
T Consensus 81 ~~~~l~~aD~ailVVDa~~g~--~~~t~~~~~~~~~~--~~p~ivviNK~D~~~a 131 (270)
T cd01886 81 VERSLRVLDGAVAVFDAVAGV--EPQTETVWRQADRY--NVPRIAFVNKMDRTGA 131 (270)
T ss_pred HHHHHHHcCEEEEEEECCCCC--CHHHHHHHHHHHHc--CCCEEEEEECCCCCCC
Confidence 888899999999999998753 22223444444443 7899999999998753
No 216
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.83 E-value=1.3e-19 Score=130.85 Aligned_cols=116 Identities=17% Similarity=0.133 Sum_probs=79.9
Q ss_pred eeEEEEcCCCCchhHHHHHHhhCCCCCccc---------C-c-----------eeeeeeEEEEECCeEEEEEEEeCCCCC
Q psy4710 6 KKLVIVGDGACGKTCLLIVFSKDQFPEVYV---------P-T-----------VFENYVADIEVDSKQVELALWDTAGQE 64 (192)
Q Consensus 6 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~---------~-~-----------~~~~~~~~~~~~~~~~~~~l~D~~g~~ 64 (192)
.+|+++|++|+|||||+++|+...-..... . + ..+.......+...+..+.+|||||+.
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~ 82 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE 82 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence 579999999999999999998532110000 0 0 011112223456677899999999999
Q ss_pred cccccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCc
Q psy4710 65 DYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDP 125 (192)
Q Consensus 65 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 125 (192)
+|.......++.+|++|+|+|+++... ...+.++...... +.|+++++||+|+....
T Consensus 83 df~~~~~~~l~~aD~~IlVvda~~g~~--~~~~~i~~~~~~~--~~P~iivvNK~D~~~a~ 139 (267)
T cd04169 83 DFSEDTYRTLTAVDSAVMVIDAAKGVE--PQTRKLFEVCRLR--GIPIITFINKLDREGRD 139 (267)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCcc--HHHHHHHHHHHhc--CCCEEEEEECCccCCCC
Confidence 887766677889999999999987532 2223444444433 79999999999986543
No 217
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.83 E-value=7.3e-20 Score=129.04 Aligned_cols=154 Identities=12% Similarity=0.070 Sum_probs=92.5
Q ss_pred eEEEEcCCCCchhHHHHHHhhCCCCCc---------------------------c---cCceeeeeeEEEEECCeEEEEE
Q psy4710 7 KLVIVGDGACGKTCLLIVFSKDQFPEV---------------------------Y---VPTVFENYVADIEVDSKQVELA 56 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~~~~~~~---------------------------~---~~~~~~~~~~~~~~~~~~~~~~ 56 (192)
+|+++|++++|||||+.+|+...-... . .....+.......+...+..+.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 589999999999999999864211000 0 0011111122233445667899
Q ss_pred EEeCCCCCcccccccccCCCCCEEEEEEECCChhh-----hh-chhhhhHHHHhhhCCCCcEEEEeecccccCCccchhh
Q psy4710 57 LWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDS-----LE-NIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKE 130 (192)
Q Consensus 57 l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~-----~~-~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~ 130 (192)
+|||||+..|...+...+..+|++++|+|+++... .. ...+.+ ..... ....|+++++||+|+.........
T Consensus 81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~iiivvNK~Dl~~~~~~~~~ 158 (219)
T cd01883 81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHA-LLART-LGVKQLIVAVNKMDDVTVNWSEER 158 (219)
T ss_pred EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHH-HHHHH-cCCCeEEEEEEccccccccccHHH
Confidence 99999998877666667788999999999998521 11 111122 22222 224689999999999742110000
Q ss_pred hhhccCCCCCHHHHHHHHHHcC----CceEEEeccCCcCCHH
Q psy4710 131 LNKMKQEPVKPEEGRAMAQKIN----AFAYLECSAKSKEGVR 168 (192)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~Sa~~~~gi~ 168 (192)
... ...+...+...++ .++++++||++|+|++
T Consensus 159 ~~~------i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 159 YDE------IKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred HHH------HHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 000 0112222233332 2689999999999987
No 218
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.82 E-value=5.6e-20 Score=129.22 Aligned_cols=112 Identities=18% Similarity=0.175 Sum_probs=78.1
Q ss_pred eEEEEcCCCCchhHHHHHHhhCCCCCcc-----------cCc------e-eeeeeE--EEEE---CCeEEEEEEEeCCCC
Q psy4710 7 KLVIVGDGACGKTCLLIVFSKDQFPEVY-----------VPT------V-FENYVA--DIEV---DSKQVELALWDTAGQ 63 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~~~~~~~~-----------~~~------~-~~~~~~--~~~~---~~~~~~~~l~D~~g~ 63 (192)
+|+++|+.++|||||+++|+........ ... . .+.... .+.+ ++..+.+.+|||||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 6899999999999999999875433220 000 0 000011 1111 345688999999999
Q ss_pred CcccccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeeccccc
Q psy4710 64 EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLR 122 (192)
Q Consensus 64 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 122 (192)
.+|.......+..+|++++|+|+++..+... +.++...... +.|+++++||+|+.
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~--~~~~~~~~~~--~~p~iiviNK~D~~ 136 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT--ERLIRHAILE--GLPIVLVINKIDRL 136 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCCCHHH--HHHHHHHHHc--CCCEEEEEECcccC
Confidence 9988777788889999999999987654332 2344443332 69999999999986
No 219
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.82 E-value=7.1e-20 Score=139.75 Aligned_cols=166 Identities=14% Similarity=0.114 Sum_probs=103.7
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCCCCcccC-----ceeee-----------------eeEEEEECC------eEEEE
Q psy4710 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVP-----TVFEN-----------------YVADIEVDS------KQVEL 55 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~-----~~~~~-----------------~~~~~~~~~------~~~~~ 55 (192)
.+++|+++|++++|||||+++|.+......... +.... +......+. ....+
T Consensus 3 ~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 82 (406)
T TIGR03680 3 PEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRV 82 (406)
T ss_pred ceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEE
Confidence 578999999999999999999975322110000 00000 000000011 14679
Q ss_pred EEEeCCCCCcccccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhcc
Q psy4710 56 ALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMK 135 (192)
Q Consensus 56 ~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~ 135 (192)
.+||+||+++|...+......+|++++|+|++++....... ..+..+... ...|+++++||+|+.........
T Consensus 83 ~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~-e~l~~l~~~-gi~~iIVvvNK~Dl~~~~~~~~~----- 155 (406)
T TIGR03680 83 SFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTK-EHLMALEII-GIKNIVIVQNKIDLVSKEKALEN----- 155 (406)
T ss_pred EEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchH-HHHHHHHHc-CCCeEEEEEEccccCCHHHHHHH-----
Confidence 99999999999888777778899999999999753111111 222233222 23579999999998753211111
Q ss_pred CCCCCHHHHHHHHHHc--CCceEEEeccCCcCCHHHHHHHHHHHHhhh
Q psy4710 136 QEPVKPEEGRAMAQKI--NAFAYLECSAKSKEGVREVFETATRAALQV 181 (192)
Q Consensus 136 ~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~ 181 (192)
.++...+.... ..++++++||++++|+++++++|...+...
T Consensus 156 -----~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~~~ 198 (406)
T TIGR03680 156 -----YEEIKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIPTP 198 (406)
T ss_pred -----HHHHHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCCCC
Confidence 11222222221 236899999999999999999999876543
No 220
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.82 E-value=1.3e-19 Score=125.74 Aligned_cols=173 Identities=14% Similarity=0.136 Sum_probs=103.3
Q ss_pred ceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceee-eeeEE-EEEC-CeEEEEEEEeCCCCCccccc-----ccccCCC
Q psy4710 5 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFE-NYVAD-IEVD-SKQVELALWDTAGQEDYDRL-----RPLSYPD 76 (192)
Q Consensus 5 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~-~~~~~-~~~~-~~~~~~~l~D~~g~~~~~~~-----~~~~~~~ 76 (192)
++||+++|++|+|||||+|+|++.........+... ..... ..+. .....+.+||+||....... ....+..
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~~ 80 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPPDDYLEEMKFSE 80 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCCHHHHHHHhCccC
Confidence 579999999999999999999986554322221111 00000 0111 11236899999996532211 1223567
Q ss_pred CCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHH----HH--
Q psy4710 77 TDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMA----QK-- 150 (192)
Q Consensus 77 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-- 150 (192)
+|+++++.+ ..+......|+..+... +.|+++|+||+|+....+........... ...++.++.+ ..
T Consensus 81 ~d~~l~v~~----~~~~~~d~~~~~~l~~~--~~~~ilV~nK~D~~~~~~~~~~~~~~~~~-~~l~~i~~~~~~~~~~~~ 153 (197)
T cd04104 81 YDFFIIISS----TRFSSNDVKLAKAIQCM--GKKFYFVRTKVDRDLSNEQRSKPRSFNRE-QVLQEIRDNCLENLQEAG 153 (197)
T ss_pred cCEEEEEeC----CCCCHHHHHHHHHHHHh--CCCEEEEEecccchhhhhhccccccccHH-HHHHHHHHHHHHHHHHcC
Confidence 898888743 23555556777777776 78999999999996543311100000000 0011111111 11
Q ss_pred cCCceEEEeccC--CcCCHHHHHHHHHHHHhhhccc
Q psy4710 151 INAFAYLECSAK--SKEGVREVFETATRAALQVKKK 184 (192)
Q Consensus 151 ~~~~~~~~~Sa~--~~~gi~~~~~~i~~~~~~~~~~ 184 (192)
....++|.+|+. .+.|+..+.+.+...+.+.++.
T Consensus 154 ~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~~~~ 189 (197)
T cd04104 154 VSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAHKRH 189 (197)
T ss_pred CCCCCEEEEeCCChhhcChHHHHHHHHHHhhHHHHH
Confidence 122478899998 5789999999999998876653
No 221
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.82 E-value=1e-19 Score=123.21 Aligned_cols=154 Identities=12% Similarity=0.086 Sum_probs=93.7
Q ss_pred eEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcc----------cccccccC-
Q psy4710 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDY----------DRLRPLSY- 74 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~----------~~~~~~~~- 74 (192)
.|+++|++|+|||||++.+.+........++..... ......+. .+.+||+||.... ......++
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~ 77 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE 77 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence 489999999999999999996554433333322211 11222222 8899999995332 22222222
Q ss_pred --CCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHH-Hc
Q psy4710 75 --PDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQ-KI 151 (192)
Q Consensus 75 --~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 151 (192)
...+++++++|.....+... ......+... +.|+++++||+|+...... ...........+ ..
T Consensus 78 ~~~~~~~~~~v~d~~~~~~~~~--~~~~~~l~~~--~~~vi~v~nK~D~~~~~~~----------~~~~~~~~~~l~~~~ 143 (170)
T cd01876 78 NRENLKGVVLLIDSRHGPTEID--LEMLDWLEEL--GIPFLVVLTKADKLKKSEL----------AKALKEIKKELKLFE 143 (170)
T ss_pred hChhhhEEEEEEEcCcCCCHhH--HHHHHHHHHc--CCCEEEEEEchhcCChHHH----------HHHHHHHHHHHHhcc
Confidence 34678899999876522111 2233344433 6899999999998642210 001111111222 23
Q ss_pred CCceEEEeccCCcCCHHHHHHHHHHH
Q psy4710 152 NAFAYLECSAKSKEGVREVFETATRA 177 (192)
Q Consensus 152 ~~~~~~~~Sa~~~~gi~~~~~~i~~~ 177 (192)
...+++++|++++.|+++++++|.+.
T Consensus 144 ~~~~~~~~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 144 IDPPIILFSSLKGQGIDELRALIEKW 169 (170)
T ss_pred CCCceEEEecCCCCCHHHHHHHHHHh
Confidence 44689999999999999999999875
No 222
>PRK12735 elongation factor Tu; Reviewed
Probab=99.82 E-value=1.8e-19 Score=137.07 Aligned_cols=163 Identities=17% Similarity=0.138 Sum_probs=104.5
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCCC------------Cc-c--cCceeeeeeEEEEECCeEEEEEEEeCCCCCcccc
Q psy4710 4 IRKKLVIVGDGACGKTCLLIVFSKDQFP------------EV-Y--VPTVFENYVADIEVDSKQVELALWDTAGQEDYDR 68 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~------------~~-~--~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~ 68 (192)
..++|+++|++++|||||+++|++.... +. . .....+.......+...+..+.++||||+.+|..
T Consensus 11 ~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f~~ 90 (396)
T PRK12735 11 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHADYVK 90 (396)
T ss_pred CeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHHHHH
Confidence 5789999999999999999999862110 00 0 0111111122233444556789999999988877
Q ss_pred cccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEE-EEeecccccCCccchhhhhhccCCCCCHHHHHHH
Q psy4710 69 LRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII-LVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAM 147 (192)
Q Consensus 69 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~i-vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (192)
.....+..+|++++|+|+.+... .....++..+... +.|.+ +++||+|+.+..... .....+...+
T Consensus 91 ~~~~~~~~aD~~llVvda~~g~~--~qt~e~l~~~~~~--gi~~iivvvNK~Dl~~~~~~~---------~~~~~ei~~~ 157 (396)
T PRK12735 91 NMITGAAQMDGAILVVSAADGPM--PQTREHILLARQV--GVPYIVVFLNKCDMVDDEELL---------ELVEMEVREL 157 (396)
T ss_pred HHHhhhccCCEEEEEEECCCCCc--hhHHHHHHHHHHc--CCCeEEEEEEecCCcchHHHH---------HHHHHHHHHH
Confidence 66677789999999999987422 1112333444433 68865 579999986421100 0112234444
Q ss_pred HHHcC----CceEEEeccCCcC----------CHHHHHHHHHHHHh
Q psy4710 148 AQKIN----AFAYLECSAKSKE----------GVREVFETATRAAL 179 (192)
Q Consensus 148 ~~~~~----~~~~~~~Sa~~~~----------gi~~~~~~i~~~~~ 179 (192)
...++ .++++++||+++. ++.++++.|...+.
T Consensus 158 l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~ 203 (396)
T PRK12735 158 LSKYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYIP 203 (396)
T ss_pred HHHcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcCC
Confidence 44443 2689999999984 68888888887654
No 223
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.81 E-value=1.3e-19 Score=137.98 Aligned_cols=162 Identities=16% Similarity=0.147 Sum_probs=100.2
Q ss_pred ccceeEEEEcCCCCchhHHHHHHhhCCC------------CCcc---cCceeeeeeEEEEECCeEEEEEEEeCCCCCccc
Q psy4710 3 AIRKKLVIVGDGACGKTCLLIVFSKDQF------------PEVY---VPTVFENYVADIEVDSKQVELALWDTAGQEDYD 67 (192)
Q Consensus 3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~------------~~~~---~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~ 67 (192)
...++|+++|+.++|||||+++|++... .+.. .....+.......++..+..+.+|||||+++|.
T Consensus 10 ~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f~ 89 (394)
T TIGR00485 10 KPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHADYV 89 (394)
T ss_pred CceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHHHH
Confidence 4678999999999999999999974310 0000 001112222333455566789999999999887
Q ss_pred ccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEE-EEeecccccCCccchhhhhhccCCCCCHHHHHH
Q psy4710 68 RLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII-LVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRA 146 (192)
Q Consensus 68 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~i-vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (192)
.........+|++++|+|+.++-..+. ..++..+... +.|.+ +++||+|+.+.....+ ....+...
T Consensus 90 ~~~~~~~~~~D~~ilVvda~~g~~~qt--~e~l~~~~~~--gi~~iIvvvNK~Dl~~~~~~~~---------~~~~~i~~ 156 (394)
T TIGR00485 90 KNMITGAAQMDGAILVVSATDGPMPQT--REHILLARQV--GVPYIVVFLNKCDMVDDEELLE---------LVEMEVRE 156 (394)
T ss_pred HHHHHHHhhCCEEEEEEECCCCCcHHH--HHHHHHHHHc--CCCEEEEEEEecccCCHHHHHH---------HHHHHHHH
Confidence 666666678899999999987422221 2333334333 67765 6899999865211100 01223444
Q ss_pred HHHHcCC----ceEEEeccCCcC--------CHHHHHHHHHHH
Q psy4710 147 MAQKINA----FAYLECSAKSKE--------GVREVFETATRA 177 (192)
Q Consensus 147 ~~~~~~~----~~~~~~Sa~~~~--------gi~~~~~~i~~~ 177 (192)
+...++. +|++++||+++. ++.++++.+...
T Consensus 157 ~l~~~~~~~~~~~ii~vSa~~g~~g~~~~~~~~~~ll~~l~~~ 199 (394)
T TIGR00485 157 LLSEYDFPGDDTPIIRGSALKALEGDAEWEAKILELMDAVDEY 199 (394)
T ss_pred HHHhcCCCccCccEEECccccccccCCchhHhHHHHHHHHHhc
Confidence 5554432 689999999874 344555555443
No 224
>KOG1489|consensus
Probab=99.81 E-value=2.5e-19 Score=127.46 Aligned_cols=155 Identities=16% Similarity=0.165 Sum_probs=111.3
Q ss_pred eEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccc-------cccCCCCCE
Q psy4710 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLR-------PLSYPDTDV 79 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~-------~~~~~~~~~ 79 (192)
.|.++|-||+|||||++++...+......+.++-..........+...+.+-|+||.-.-.+.. -..++.++.
T Consensus 198 dvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHiER~~~ 277 (366)
T KOG1489|consen 198 DVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHIERCKG 277 (366)
T ss_pred ccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccccceeEeccCccccccccccCcccHHHHHHHHhhce
Confidence 4789999999999999999998887766666665544333333344459999999943322221 123567999
Q ss_pred EEEEEECCCh---hhhhchhhhhHHHHh---hhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCC
Q psy4710 80 ILMCFSIDSP---DSLENIPEKWTPEVK---HFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINA 153 (192)
Q Consensus 80 ~i~v~d~~~~---~~~~~~~~~~~~~~~---~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (192)
.+||+|++.. ..|+.+. .+...+. +...+.|.+||+||+|+.+. ......++.+.++.
T Consensus 278 l~fVvD~s~~~~~~p~~~~~-lL~~ELe~yek~L~~rp~liVaNKiD~~ea---------------e~~~l~~L~~~lq~ 341 (366)
T KOG1489|consen 278 LLFVVDLSGKQLRNPWQQLQ-LLIEELELYEKGLADRPALIVANKIDLPEA---------------EKNLLSSLAKRLQN 341 (366)
T ss_pred EEEEEECCCcccCCHHHHHH-HHHHHHHHHhhhhccCceEEEEeccCchhH---------------HHHHHHHHHHHcCC
Confidence 9999999998 6666664 3333333 34458999999999998531 12224677778776
Q ss_pred ceEEEeccCCcCCHHHHHHHHHHH
Q psy4710 154 FAYLECSAKSKEGVREVFETATRA 177 (192)
Q Consensus 154 ~~~~~~Sa~~~~gi~~~~~~i~~~ 177 (192)
..++++||+.++|+.++++.+.+.
T Consensus 342 ~~V~pvsA~~~egl~~ll~~lr~~ 365 (366)
T KOG1489|consen 342 PHVVPVSAKSGEGLEELLNGLREL 365 (366)
T ss_pred CcEEEeeeccccchHHHHHHHhhc
Confidence 459999999999999999987653
No 225
>KOG0096|consensus
Probab=99.81 E-value=3.1e-19 Score=117.82 Aligned_cols=162 Identities=29% Similarity=0.434 Sum_probs=131.9
Q ss_pred ceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCe-EEEEEEEeCCCCCcccccccccCCCCCEEEEE
Q psy4710 5 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSK-QVELALWDTAGQEDYDRLRPLSYPDTDVILMC 83 (192)
Q Consensus 5 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v 83 (192)
-++++++|..|.||||++++.+.+.+...+.++.+-.....+...+. .+++.+|||.|++.+......++-++.++|++
T Consensus 10 ~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAiim 89 (216)
T KOG0096|consen 10 TFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAIIM 89 (216)
T ss_pred eEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeEEE
Confidence 57899999999999999999999999999888877555443333443 49999999999999998888888889999999
Q ss_pred EECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccCC
Q psy4710 84 FSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKS 163 (192)
Q Consensus 84 ~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 163 (192)
+|++.+-.+.+.. .|...+.+-+.++|+++++||.|...... ..+...+-+..+ +.++++||+.
T Consensus 90 FdVtsr~t~~n~~-rwhrd~~rv~~NiPiv~cGNKvDi~~r~~--------------k~k~v~~~rkkn-l~y~~iSaks 153 (216)
T KOG0096|consen 90 FDVTSRFTYKNVP-RWHRDLVRVRENIPIVLCGNKVDIKARKV--------------KAKPVSFHRKKN-LQYYEISAKS 153 (216)
T ss_pred eeeeehhhhhcch-HHHHHHHHHhcCCCeeeeccceecccccc--------------ccccceeeeccc-ceeEEeeccc
Confidence 9999998888885 89988888888999999999999865321 111222333333 6899999999
Q ss_pred cCCHHHHHHHHHHHHhhhc
Q psy4710 164 KEGVREVFETATRAALQVK 182 (192)
Q Consensus 164 ~~gi~~~~~~i~~~~~~~~ 182 (192)
+.|.+.-|-|+.+++....
T Consensus 154 n~NfekPFl~LarKl~G~p 172 (216)
T KOG0096|consen 154 NYNFERPFLWLARKLTGDP 172 (216)
T ss_pred ccccccchHHHhhhhcCCC
Confidence 9999999999998887653
No 226
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.81 E-value=4.2e-19 Score=119.55 Aligned_cols=161 Identities=16% Similarity=0.195 Sum_probs=104.2
Q ss_pred ccceeEEEEcCCCCchhHHHHHHhhCCC-CCcccCceeeeeeEEEEECCeEEEEEEEeCCC----------CCccccccc
Q psy4710 3 AIRKKLVIVGDGACGKTCLLIVFSKDQF-PEVYVPTVFENYVADIEVDSKQVELALWDTAG----------QEDYDRLRP 71 (192)
Q Consensus 3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g----------~~~~~~~~~ 71 (192)
....-|+++|.+|+|||||+|+|++.+- +..+..++.+....-+.++.. +.++|.|| ++.+.....
T Consensus 22 ~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~~~i~ 98 (200)
T COG0218 22 DDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWKKLIE 98 (200)
T ss_pred CCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHHHHHH
Confidence 3456899999999999999999999763 333333333333333344433 88999999 122222222
Q ss_pred ccCC---CCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHH-HH
Q psy4710 72 LSYP---DTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGR-AM 147 (192)
Q Consensus 72 ~~~~---~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 147 (192)
.+++ +..++++++|+..+ ....+...++.+... +.|++|++||+|.....+....+ .... .+
T Consensus 99 ~YL~~R~~L~~vvlliD~r~~--~~~~D~em~~~l~~~--~i~~~vv~tK~DKi~~~~~~k~l----------~~v~~~l 164 (200)
T COG0218 99 EYLEKRANLKGVVLLIDARHP--PKDLDREMIEFLLEL--GIPVIVVLTKADKLKKSERNKQL----------NKVAEEL 164 (200)
T ss_pred HHHhhchhheEEEEEEECCCC--CcHHHHHHHHHHHHc--CCCeEEEEEccccCChhHHHHHH----------HHHHHHh
Confidence 2332 35778889998875 455555677777766 89999999999988743321111 1111 11
Q ss_pred HHHcCCc-eEEEeccCCcCCHHHHHHHHHHHHhh
Q psy4710 148 AQKINAF-AYLECSAKSKEGVREVFETATRAALQ 180 (192)
Q Consensus 148 ~~~~~~~-~~~~~Sa~~~~gi~~~~~~i~~~~~~ 180 (192)
....... -++..|+..+.|++++...|...+..
T Consensus 165 ~~~~~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~~ 198 (200)
T COG0218 165 KKPPPDDQWVVLFSSLKKKGIDELKAKILEWLKE 198 (200)
T ss_pred cCCCCccceEEEEecccccCHHHHHHHHHHHhhc
Confidence 1112211 17789999999999999999887654
No 227
>CHL00071 tufA elongation factor Tu
Probab=99.81 E-value=2e-19 Score=137.43 Aligned_cols=150 Identities=18% Similarity=0.150 Sum_probs=96.2
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCCCC---------------cccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccc
Q psy4710 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPE---------------VYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDR 68 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~ 68 (192)
..++|+++|++++|||||+++|++..-.. .......+.......+..++..+.++||||+.+|..
T Consensus 11 ~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~~~~ 90 (409)
T CHL00071 11 PHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADYVK 90 (409)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHHHHH
Confidence 57899999999999999999998742110 000011111122233445566789999999988877
Q ss_pred cccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCc-EEEEeecccccCCccchhhhhhccCCCCCHHHHHHH
Q psy4710 69 LRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVP-IILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAM 147 (192)
Q Consensus 69 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (192)
.....+..+|++++|+|+... +......++..+... +.| +|+++||+|+.......+ ....+...+
T Consensus 91 ~~~~~~~~~D~~ilVvda~~g--~~~qt~~~~~~~~~~--g~~~iIvvvNK~D~~~~~~~~~---------~~~~~l~~~ 157 (409)
T CHL00071 91 NMITGAAQMDGAILVVSAADG--PMPQTKEHILLAKQV--GVPNIVVFLNKEDQVDDEELLE---------LVELEVREL 157 (409)
T ss_pred HHHHHHHhCCEEEEEEECCCC--CcHHHHHHHHHHHHc--CCCEEEEEEEccCCCCHHHHHH---------HHHHHHHHH
Confidence 777777899999999999865 222223344444443 678 778999999975321111 012233344
Q ss_pred HHHcC----CceEEEeccCCcCC
Q psy4710 148 AQKIN----AFAYLECSAKSKEG 166 (192)
Q Consensus 148 ~~~~~----~~~~~~~Sa~~~~g 166 (192)
....+ ..|++++||.+|.+
T Consensus 158 l~~~~~~~~~~~ii~~Sa~~g~n 180 (409)
T CHL00071 158 LSKYDFPGDDIPIVSGSALLALE 180 (409)
T ss_pred HHHhCCCCCcceEEEcchhhccc
Confidence 44332 26899999998863
No 228
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.81 E-value=4.5e-19 Score=135.33 Aligned_cols=166 Identities=16% Similarity=0.132 Sum_probs=101.2
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCCCCcc---c--Cceeeeee-EEE----------EE------CC------eEEEE
Q psy4710 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVY---V--PTVFENYV-ADI----------EV------DS------KQVEL 55 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~---~--~~~~~~~~-~~~----------~~------~~------~~~~~ 55 (192)
.+++|+++|+.++|||||+.+|.+....... . .+....+. ... .+ +. ....+
T Consensus 8 ~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 87 (411)
T PRK04000 8 PEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLRRV 87 (411)
T ss_pred CcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccccEE
Confidence 5789999999999999999999653211111 0 01110000 000 00 00 13578
Q ss_pred EEEeCCCCCcccccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhcc
Q psy4710 56 ALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMK 135 (192)
Q Consensus 56 ~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~ 135 (192)
.+|||||+++|..........+|++++|+|++++.......+.+ ..+... ...|+++|+||+|+.+......
T Consensus 88 ~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l-~~l~~~-~i~~iiVVlNK~Dl~~~~~~~~------ 159 (411)
T PRK04000 88 SFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHL-MALDII-GIKNIVIVQNKIDLVSKERALE------ 159 (411)
T ss_pred EEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHH-HHHHHc-CCCcEEEEEEeeccccchhHHH------
Confidence 99999999888766555666789999999999642111111122 222222 1347899999999975321110
Q ss_pred CCCCCHHHHHHHHHHc--CCceEEEeccCCcCCHHHHHHHHHHHHhhh
Q psy4710 136 QEPVKPEEGRAMAQKI--NAFAYLECSAKSKEGVREVFETATRAALQV 181 (192)
Q Consensus 136 ~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~ 181 (192)
..++...+.... ...+++++||++++|++++++.|...+...
T Consensus 160 ----~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~~~ 203 (411)
T PRK04000 160 ----NYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIPTP 203 (411)
T ss_pred ----HHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCCCC
Confidence 112222333221 236899999999999999999999877544
No 229
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.80 E-value=3.7e-19 Score=138.96 Aligned_cols=118 Identities=19% Similarity=0.152 Sum_probs=81.1
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCCC--Cccc-------C-c-----------eeeeeeEEEEECCeEEEEEEEeCCC
Q psy4710 4 IRKKLVIVGDGACGKTCLLIVFSKDQFP--EVYV-------P-T-----------VFENYVADIEVDSKQVELALWDTAG 62 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~--~~~~-------~-~-----------~~~~~~~~~~~~~~~~~~~l~D~~g 62 (192)
...+|+|+|++++|||||+++|+...-. .... . + ..+.......+...+..+.+|||||
T Consensus 9 ~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG 88 (526)
T PRK00741 9 KRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPG 88 (526)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCC
Confidence 4569999999999999999999742110 0000 0 0 0011112234455678899999999
Q ss_pred CCcccccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCc
Q psy4710 63 QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDP 125 (192)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 125 (192)
+.+|.......++.+|++|+|+|+++.- +...+.++...... +.|+++++||+|+....
T Consensus 89 ~~df~~~~~~~l~~aD~aIlVvDa~~gv--~~~t~~l~~~~~~~--~iPiiv~iNK~D~~~a~ 147 (526)
T PRK00741 89 HEDFSEDTYRTLTAVDSALMVIDAAKGV--EPQTRKLMEVCRLR--DTPIFTFINKLDRDGRE 147 (526)
T ss_pred chhhHHHHHHHHHHCCEEEEEEecCCCC--CHHHHHHHHHHHhc--CCCEEEEEECCcccccC
Confidence 9998877777889999999999998752 22223444444433 89999999999987644
No 230
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.80 E-value=1.2e-18 Score=126.57 Aligned_cols=114 Identities=20% Similarity=0.159 Sum_probs=76.8
Q ss_pred eEEEEcCCCCchhHHHHHHhhCCCCCccc----C-c------------eeeeeeEEEEECCeEEEEEEEeCCCCCccccc
Q psy4710 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYV----P-T------------VFENYVADIEVDSKQVELALWDTAGQEDYDRL 69 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~----~-~------------~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~ 69 (192)
+|+++|++|+|||||+++|+......... . + ..+.......+...+..+.+|||||+.+|...
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~ 80 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE 80 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence 58999999999999999997533111000 0 0 00001111223334568899999999888777
Q ss_pred ccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCC
Q psy4710 70 RPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRND 124 (192)
Q Consensus 70 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 124 (192)
+...++.+|++++|+|+++....... ..+..+... +.|.++++||+|....
T Consensus 81 ~~~~l~~aD~~i~Vvd~~~g~~~~~~--~~~~~~~~~--~~p~iivvNK~D~~~~ 131 (268)
T cd04170 81 TRAALRAADAALVVVSAQSGVEVGTE--KLWEFADEA--GIPRIIFINKMDRERA 131 (268)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHHH--HHHHHHHHc--CCCEEEEEECCccCCC
Confidence 77888999999999999886433322 222333333 7899999999998754
No 231
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.79 E-value=2.8e-18 Score=130.14 Aligned_cols=169 Identities=21% Similarity=0.232 Sum_probs=115.6
Q ss_pred cccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECC-eEEEEEEEeCCCCCcccccccccCCCCCE
Q psy4710 2 AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDS-KQVELALWDTAGQEDYDRLRPLSYPDTDV 79 (192)
Q Consensus 2 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ 79 (192)
..++.=|.++|+...|||||+.++-+...........+... ...+..+. ..-.+.++|||||+.|..++..-..-+|+
T Consensus 2 ~~R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDI 81 (509)
T COG0532 2 ELRPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDI 81 (509)
T ss_pred CCCCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccE
Confidence 34667799999999999999999998877665332222211 12222221 34578999999999999999888889999
Q ss_pred EEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHc-CCceEEE
Q psy4710 80 ILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKI-NAFAYLE 158 (192)
Q Consensus 80 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 158 (192)
++||+++.+.---+.. .-+...+. .+.|++|++||+|..+.++.....+....... .+.| +...+++
T Consensus 82 aILVVa~dDGv~pQTi--EAI~hak~--a~vP~iVAiNKiDk~~~np~~v~~el~~~gl~--------~E~~gg~v~~Vp 149 (509)
T COG0532 82 AILVVAADDGVMPQTI--EAINHAKA--AGVPIVVAINKIDKPEANPDKVKQELQEYGLV--------PEEWGGDVIFVP 149 (509)
T ss_pred EEEEEEccCCcchhHH--HHHHHHHH--CCCCEEEEEecccCCCCCHHHHHHHHHHcCCC--------HhhcCCceEEEE
Confidence 9999999985222221 11122222 38999999999999876543222221111111 1222 2367999
Q ss_pred eccCCcCCHHHHHHHHHHHHhhhc
Q psy4710 159 CSAKSKEGVREVFETATRAALQVK 182 (192)
Q Consensus 159 ~Sa~~~~gi~~~~~~i~~~~~~~~ 182 (192)
+||++|+|+++|+..+.-.....+
T Consensus 150 vSA~tg~Gi~eLL~~ill~aev~e 173 (509)
T COG0532 150 VSAKTGEGIDELLELILLLAEVLE 173 (509)
T ss_pred eeccCCCCHHHHHHHHHHHHHHHh
Confidence 999999999999999887766654
No 232
>PRK00049 elongation factor Tu; Reviewed
Probab=99.79 E-value=1.6e-18 Score=131.96 Aligned_cols=164 Identities=17% Similarity=0.140 Sum_probs=104.9
Q ss_pred ccceeEEEEcCCCCchhHHHHHHhhCCCCC------c---------ccCceeeeeeEEEEECCeEEEEEEEeCCCCCccc
Q psy4710 3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPE------V---------YVPTVFENYVADIEVDSKQVELALWDTAGQEDYD 67 (192)
Q Consensus 3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~------~---------~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~ 67 (192)
...++|+++|+.++|||||+++|++..... . ......+.......+...+..+.++||||+.+|.
T Consensus 10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f~ 89 (396)
T PRK00049 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADYV 89 (396)
T ss_pred CCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHHHH
Confidence 457899999999999999999998732110 0 0011111222233444456678999999998887
Q ss_pred ccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEE-EEeecccccCCccchhhhhhccCCCCCHHHHHH
Q psy4710 68 RLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII-LVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRA 146 (192)
Q Consensus 68 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~i-vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (192)
......+..+|++++|+|+..+- ......++..+... +.|.+ +++||+|+.......+. ...+...
T Consensus 90 ~~~~~~~~~aD~~llVVDa~~g~--~~qt~~~~~~~~~~--g~p~iiVvvNK~D~~~~~~~~~~---------~~~~i~~ 156 (396)
T PRK00049 90 KNMITGAAQMDGAILVVSAADGP--MPQTREHILLARQV--GVPYIVVFLNKCDMVDDEELLEL---------VEMEVRE 156 (396)
T ss_pred HHHHhhhccCCEEEEEEECCCCC--chHHHHHHHHHHHc--CCCEEEEEEeecCCcchHHHHHH---------HHHHHHH
Confidence 76667788999999999998752 22223444455444 68976 68999998642110000 1112333
Q ss_pred HHHHc----CCceEEEeccCCcC----------CHHHHHHHHHHHHh
Q psy4710 147 MAQKI----NAFAYLECSAKSKE----------GVREVFETATRAAL 179 (192)
Q Consensus 147 ~~~~~----~~~~~~~~Sa~~~~----------gi~~~~~~i~~~~~ 179 (192)
+.... ...|++++||+++. |+..+++.|...+.
T Consensus 157 ~l~~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~~ 203 (396)
T PRK00049 157 LLSKYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYIP 203 (396)
T ss_pred HHHhcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcCC
Confidence 33332 23689999999875 57788888877654
No 233
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.78 E-value=7.9e-18 Score=131.08 Aligned_cols=158 Identities=16% Similarity=0.131 Sum_probs=109.7
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCccccc------cccc-C-C
Q psy4710 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRL------RPLS-Y-P 75 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~------~~~~-~-~ 75 (192)
...+|+++|+||+|||||.|++++......--|..+ ...++-.....+.++++.|+||-.+.... ...+ + .
T Consensus 2 ~~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvT-VEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~ 80 (653)
T COG0370 2 KKLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVT-VEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLEG 80 (653)
T ss_pred CcceEEEecCCCccHHHHHHHHhccCceecCCCCee-EEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHhcC
Confidence 456799999999999999999999876544333322 22333344555556999999995443222 1122 2 3
Q ss_pred CCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCce
Q psy4710 76 DTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFA 155 (192)
Q Consensus 76 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (192)
..|+++.|+|+++.+.-- ++--++.+. +.|+++++|++|.... .--.-...++.+.++ +|
T Consensus 81 ~~D~ivnVvDAtnLeRnL----yltlQLlE~--g~p~ilaLNm~D~A~~-------------~Gi~ID~~~L~~~LG-vP 140 (653)
T COG0370 81 KPDLIVNVVDATNLERNL----YLTLQLLEL--GIPMILALNMIDEAKK-------------RGIRIDIEKLSKLLG-VP 140 (653)
T ss_pred CCCEEEEEcccchHHHHH----HHHHHHHHc--CCCeEEEeccHhhHHh-------------cCCcccHHHHHHHhC-CC
Confidence 579999999999864221 222222333 8999999999998762 222344557778888 59
Q ss_pred EEEeccCCcCCHHHHHHHHHHHHhhhc
Q psy4710 156 YLECSAKSKEGVREVFETATRAALQVK 182 (192)
Q Consensus 156 ~~~~Sa~~~~gi~~~~~~i~~~~~~~~ 182 (192)
++++||++|.|++++++.+.+......
T Consensus 141 Vv~tvA~~g~G~~~l~~~i~~~~~~~~ 167 (653)
T COG0370 141 VVPTVAKRGEGLEELKRAIIELAESKT 167 (653)
T ss_pred EEEEEeecCCCHHHHHHHHHHhccccc
Confidence 999999999999999999987655543
No 234
>PLN03127 Elongation factor Tu; Provisional
Probab=99.77 E-value=5.4e-18 Score=130.27 Aligned_cols=166 Identities=15% Similarity=0.123 Sum_probs=103.0
Q ss_pred ccceeEEEEcCCCCchhHHHHHHhhC------CCCCc---------ccCceeeeeeEEEEECCeEEEEEEEeCCCCCccc
Q psy4710 3 AIRKKLVIVGDGACGKTCLLIVFSKD------QFPEV---------YVPTVFENYVADIEVDSKQVELALWDTAGQEDYD 67 (192)
Q Consensus 3 ~~~~~i~v~G~~~~GKSsli~~l~~~------~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~ 67 (192)
...++|+++|+.++|||||+++|.+. ..... ....+.+.......+..++..+.++||||+.+|.
T Consensus 59 k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~f~ 138 (447)
T PLN03127 59 KPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHADYV 138 (447)
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccchH
Confidence 35789999999999999999999732 10000 0001112222333455566788999999998886
Q ss_pred ccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCc-EEEEeecccccCCccchhhhhhccCCCCCHHHHHH
Q psy4710 68 RLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVP-IILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRA 146 (192)
Q Consensus 68 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (192)
......+..+|++++|+|+.+.- .......+..+... +.| +|+++||+|+.+.....+. ...+..+
T Consensus 139 ~~~~~g~~~aD~allVVda~~g~--~~qt~e~l~~~~~~--gip~iIvviNKiDlv~~~~~~~~---------i~~~i~~ 205 (447)
T PLN03127 139 KNMITGAAQMDGGILVVSAPDGP--MPQTKEHILLARQV--GVPSLVVFLNKVDVVDDEELLEL---------VEMELRE 205 (447)
T ss_pred HHHHHHHhhCCEEEEEEECCCCC--chhHHHHHHHHHHc--CCCeEEEEEEeeccCCHHHHHHH---------HHHHHHH
Confidence 66666667899999999988652 22222344444444 688 5789999998752211100 0112223
Q ss_pred HHHHc----CCceEEEeccC---CcCC-------HHHHHHHHHHHHhhh
Q psy4710 147 MAQKI----NAFAYLECSAK---SKEG-------VREVFETATRAALQV 181 (192)
Q Consensus 147 ~~~~~----~~~~~~~~Sa~---~~~g-------i~~~~~~i~~~~~~~ 181 (192)
+...+ ..+|++++|+. ++.| +.++++.+...+..+
T Consensus 206 ~l~~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp~p 254 (447)
T PLN03127 206 LLSFYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIPEP 254 (447)
T ss_pred HHHHhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCCCC
Confidence 33222 13688888875 4555 788888887766433
No 235
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.77 E-value=5.5e-19 Score=123.96 Aligned_cols=168 Identities=17% Similarity=0.286 Sum_probs=104.6
Q ss_pred eEEEEcCCCCchhHHHHHHhhCCCCCcccCc-eeeeeeEEEEECCeEEEEEEEeCCCCCcccc-----cccccCCCCCEE
Q psy4710 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPT-VFENYVADIEVDSKQVELALWDTAGQEDYDR-----LRPLSYPDTDVI 80 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~-----~~~~~~~~~~~~ 80 (192)
||+++|+.+|||||..+.+..+..+.....- .+.............+.+.+||+||+..+.. .....++++.++
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~L 80 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGVL 80 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESEE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCEE
Confidence 7999999999999999999987655433211 1222222222234567899999999876543 345577899999
Q ss_pred EEEEECCChh---hhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcC--Cce
Q psy4710 81 LMCFSIDSPD---SLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKIN--AFA 155 (192)
Q Consensus 81 i~v~d~~~~~---~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 155 (192)
|+|+|+.+.+ .+..+ ...+..+.+..|+..+.|+++|+|+..+..+........ +...+.....+ .+.
T Consensus 81 IyV~D~qs~~~~~~l~~~-~~~i~~l~~~sp~~~v~vfiHK~D~l~~~~r~~~~~~~~------~~i~~~~~~~~~~~~~ 153 (232)
T PF04670_consen 81 IYVFDAQSDDYDEDLAYL-SDCIEALRQYSPNIKVFVFIHKMDLLSEDEREEIFRDIQ------QRIRDELEDLGIEDIT 153 (232)
T ss_dssp EEEEETT-STCHHHHHHH-HHHHHHHHHHSTT-EEEEEEE-CCCS-HHHHHHHHHHHH------HHHHHHHHHTT-TSEE
T ss_pred EEEEEcccccHHHHHHHH-HHHHHHHHHhCCCCeEEEEEeecccCCHHHHHHHHHHHH------HHHHHHhhhccccceE
Confidence 9999998433 22222 234455566778999999999999987555443332211 11222222222 367
Q ss_pred EEEeccCCcCCHHHHHHHHHHHHhhhc
Q psy4710 156 YLECSAKSKEGVREVFETATRAALQVK 182 (192)
Q Consensus 156 ~~~~Sa~~~~gi~~~~~~i~~~~~~~~ 182 (192)
++.||..+ +.+-+.|..+++.+....
T Consensus 154 ~~~TSI~D-~Sly~A~S~Ivq~LiP~~ 179 (232)
T PF04670_consen 154 FFLTSIWD-ESLYEAWSKIVQKLIPNL 179 (232)
T ss_dssp EEEE-TTS-THHHHHHHHHHHTTSTTH
T ss_pred EEeccCcC-cHHHHHHHHHHHHHcccH
Confidence 88898888 589999999999988653
No 236
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.77 E-value=9.1e-19 Score=122.69 Aligned_cols=175 Identities=17% Similarity=0.190 Sum_probs=113.0
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCc-------ccccccccCCC
Q psy4710 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQED-------YDRLRPLSYPD 76 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-------~~~~~~~~~~~ 76 (192)
.+++|+++|..|+|||||+|+|+.+.......-..+..........++.-.+.+||+||-.+ ++......+..
T Consensus 38 ~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gdg~~~D~~~r~~~~d~l~~ 117 (296)
T COG3596 38 EPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDGENLVLWDTPGLGDGKDKDAEHRQLYRDYLPK 117 (296)
T ss_pred CceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccccceEEecCCCcccchhhhHHHHHHHHHHhhh
Confidence 58899999999999999999999766544432222222221112223335689999999544 45556667888
Q ss_pred CCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhc---cCCCCCH---HHHHHHHHH
Q psy4710 77 TDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKM---KQEPVKP---EEGRAMAQK 150 (192)
Q Consensus 77 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~---~~~~~~~---~~~~~~~~~ 150 (192)
.|.+++++++.|++ -..++.++..+....-+.++++++|.+|...+.......... ..+.... +...++++.
T Consensus 118 ~DLvL~l~~~~dra--L~~d~~f~~dVi~~~~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~~~q~ 195 (296)
T COG3596 118 LDLVLWLIKADDRA--LGTDEDFLRDVIILGLDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGRLFQE 195 (296)
T ss_pred ccEEEEeccCCCcc--ccCCHHHHHHHHHhccCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999874 333345555554444469999999999998764111100000 0000011 111223333
Q ss_pred cCCceEEEeccCCcCCHHHHHHHHHHHHhhhc
Q psy4710 151 INAFAYLECSAKSKEGVREVFETATRAALQVK 182 (192)
Q Consensus 151 ~~~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~~ 182 (192)
.-|++..|...+.|++++...++..+-...
T Consensus 196 --V~pV~~~~~r~~wgl~~l~~ali~~lp~e~ 225 (296)
T COG3596 196 --VKPVVAVSGRLPWGLKELVRALITALPVEA 225 (296)
T ss_pred --cCCeEEeccccCccHHHHHHHHHHhCcccc
Confidence 248888898999999999999998877543
No 237
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.77 E-value=2.8e-17 Score=117.59 Aligned_cols=156 Identities=20% Similarity=0.167 Sum_probs=109.3
Q ss_pred eeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCc-------ccccccccCCCCC
Q psy4710 6 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQED-------YDRLRPLSYPDTD 78 (192)
Q Consensus 6 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-------~~~~~~~~~~~~~ 78 (192)
-+++++|.|++|||||+++|.+........++++...... ...+++..+++.|+||.-. -.......+++||
T Consensus 64 a~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG-~l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~R~AD 142 (365)
T COG1163 64 ATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPG-MLEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVARNAD 142 (365)
T ss_pred eEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccc-eEeecCceEEEEcCcccccCcccCCCCcceeeeeeccCC
Confidence 4799999999999999999999887776666665544333 3567788999999998322 1244556789999
Q ss_pred EEEEEEECCChhh-hhchhhhh----------------------------------------HHHHh-------------
Q psy4710 79 VILMCFSIDSPDS-LENIPEKW----------------------------------------TPEVK------------- 104 (192)
Q Consensus 79 ~~i~v~d~~~~~~-~~~~~~~~----------------------------------------~~~~~------------- 104 (192)
++++|+|+....+ .+.+.+.+ ...++
T Consensus 143 lIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~Ir~ 222 (365)
T COG1163 143 LIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVLIRE 222 (365)
T ss_pred EEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEEEec
Confidence 9999999986543 22221100 01111
Q ss_pred ------------hhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccCCcCCHHHHHH
Q psy4710 105 ------------HFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFE 172 (192)
Q Consensus 105 ------------~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~ 172 (192)
..-.-+|.++|.||.|+.. .++...+.+.. ..+.+||..+.|++++.+
T Consensus 223 dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~-----------------~e~~~~l~~~~---~~v~isa~~~~nld~L~e 282 (365)
T COG1163 223 DVTLDDLIDALEGNRVYKPALYVVNKIDLPG-----------------LEELERLARKP---NSVPISAKKGINLDELKE 282 (365)
T ss_pred CCcHHHHHHHHhhcceeeeeEEEEecccccC-----------------HHHHHHHHhcc---ceEEEecccCCCHHHHHH
Confidence 1111269999999999866 22333444433 678899999999999999
Q ss_pred HHHHHHhhhc
Q psy4710 173 TATRAALQVK 182 (192)
Q Consensus 173 ~i~~~~~~~~ 182 (192)
.|.+.+--.+
T Consensus 283 ~i~~~L~liR 292 (365)
T COG1163 283 RIWDVLGLIR 292 (365)
T ss_pred HHHHhhCeEE
Confidence 9999876554
No 238
>PLN03126 Elongation factor Tu; Provisional
Probab=99.76 E-value=4.7e-18 Score=131.26 Aligned_cols=148 Identities=18% Similarity=0.174 Sum_probs=94.8
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCC------CCC----------cccCceeeeeeEEEEECCeEEEEEEEeCCCCCccc
Q psy4710 4 IRKKLVIVGDGACGKTCLLIVFSKDQ------FPE----------VYVPTVFENYVADIEVDSKQVELALWDTAGQEDYD 67 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~------~~~----------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~ 67 (192)
..++|+++|++++|||||+++|+... ... ...... +.......+..++..+.++|+||+.+|.
T Consensus 80 ~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGi-Ti~~~~~~~~~~~~~i~liDtPGh~~f~ 158 (478)
T PLN03126 80 PHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGI-TINTATVEYETENRHYAHVDCPGHADYV 158 (478)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCe-eEEEEEEEEecCCcEEEEEECCCHHHHH
Confidence 47899999999999999999998521 111 001111 1111122334455688999999999988
Q ss_pred ccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCc-EEEEeecccccCCccchhhhhhccCCCCCHHHHHH
Q psy4710 68 RLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVP-IILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRA 146 (192)
Q Consensus 68 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (192)
......+..+|++++|+|+.+... .....++..+... ++| +++++||+|+.+.....+ ....+...
T Consensus 159 ~~~~~g~~~aD~ailVVda~~G~~--~qt~e~~~~~~~~--gi~~iIvvvNK~Dl~~~~~~~~---------~i~~~i~~ 225 (478)
T PLN03126 159 KNMITGAAQMDGAILVVSGADGPM--PQTKEHILLAKQV--GVPNMVVFLNKQDQVDDEELLE---------LVELEVRE 225 (478)
T ss_pred HHHHHHHhhCCEEEEEEECCCCCc--HHHHHHHHHHHHc--CCCeEEEEEecccccCHHHHHH---------HHHHHHHH
Confidence 777777788999999999987532 2223444444444 788 788999999865211110 01123334
Q ss_pred HHHHc----CCceEEEeccCCcC
Q psy4710 147 MAQKI----NAFAYLECSAKSKE 165 (192)
Q Consensus 147 ~~~~~----~~~~~~~~Sa~~~~ 165 (192)
+.... ..+|++++|+.++.
T Consensus 226 ~l~~~g~~~~~~~~vp~Sa~~g~ 248 (478)
T PLN03126 226 LLSSYEFPGDDIPIISGSALLAL 248 (478)
T ss_pred HHHhcCCCcCcceEEEEEccccc
Confidence 44332 24689999998874
No 239
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.76 E-value=1.5e-17 Score=127.97 Aligned_cols=159 Identities=13% Similarity=0.144 Sum_probs=98.2
Q ss_pred ccceeEEEEcCCCCchhHHHHHHhhCC--CCC-------------------------c---ccCceeeeeeEEEEECCeE
Q psy4710 3 AIRKKLVIVGDGACGKTCLLIVFSKDQ--FPE-------------------------V---YVPTVFENYVADIEVDSKQ 52 (192)
Q Consensus 3 ~~~~~i~v~G~~~~GKSsli~~l~~~~--~~~-------------------------~---~~~~~~~~~~~~~~~~~~~ 52 (192)
...++|+++|+.++|||||+.+|+... ... . ......+.......+...+
T Consensus 5 k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~ 84 (446)
T PTZ00141 5 KTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84 (446)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCC
Confidence 357899999999999999999987621 110 0 0001111111223455667
Q ss_pred EEEEEEeCCCCCcccccccccCCCCCEEEEEEECCChh---hh--hchhhhhHHHHhhhCCCCc-EEEEeecccccCCcc
Q psy4710 53 VELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPD---SL--ENIPEKWTPEVKHFCPNVP-IILVGNKKDLRNDPN 126 (192)
Q Consensus 53 ~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---~~--~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~ 126 (192)
..+.++|+|||.+|.......+..+|++++|+|+..+. .+ +......+..+... ++| +||++||+|......
T Consensus 85 ~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~--gi~~iiv~vNKmD~~~~~~ 162 (446)
T PTZ00141 85 YYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTL--GVKQMIVCINKMDDKTVNY 162 (446)
T ss_pred eEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHc--CCCeEEEEEEccccccchh
Confidence 78999999999999888888888999999999998752 11 11112233333333 666 679999999543111
Q ss_pred chhhhhhccCCCCCHHHHHHHHHHcC----CceEEEeccCCcCCHHH
Q psy4710 127 TIKELNKMKQEPVKPEEGRAMAQKIN----AFAYLECSAKSKEGVRE 169 (192)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~Sa~~~~gi~~ 169 (192)
....+.. ...+...+....+ .+|++++|+.+|+|+.+
T Consensus 163 ~~~~~~~------i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 163 SQERYDE------IKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred hHHHHHH------HHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 1111110 1122223322222 36899999999999964
No 240
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.76 E-value=1.9e-17 Score=129.45 Aligned_cols=116 Identities=19% Similarity=0.171 Sum_probs=80.7
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCC--CCCcc-c-------Cc-----------eeeeeeEEEEECCeEEEEEEEeCCC
Q psy4710 4 IRKKLVIVGDGACGKTCLLIVFSKDQ--FPEVY-V-------PT-----------VFENYVADIEVDSKQVELALWDTAG 62 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~--~~~~~-~-------~~-----------~~~~~~~~~~~~~~~~~~~l~D~~g 62 (192)
...+|+|+|++++|||||+++|+... ..... . .+ ..+.......++..+..+.+|||||
T Consensus 10 ~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTPG 89 (527)
T TIGR00503 10 KRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTPG 89 (527)
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECCC
Confidence 45699999999999999999986421 11000 0 00 0111122334566778999999999
Q ss_pred CCcccccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccC
Q psy4710 63 QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN 123 (192)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 123 (192)
+.+|.......++.+|++|+|+|+++. ++...+.++...... +.|+++++||+|+..
T Consensus 90 ~~df~~~~~~~l~~aD~aIlVvDa~~g--v~~~t~~l~~~~~~~--~~PiivviNKiD~~~ 146 (527)
T TIGR00503 90 HEDFSEDTYRTLTAVDNCLMVIDAAKG--VETRTRKLMEVTRLR--DTPIFTFMNKLDRDI 146 (527)
T ss_pred hhhHHHHHHHHHHhCCEEEEEEECCCC--CCHHHHHHHHHHHhc--CCCEEEEEECccccC
Confidence 988877666678899999999999874 333333455544443 799999999999864
No 241
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.76 E-value=4.4e-18 Score=129.90 Aligned_cols=153 Identities=16% Similarity=0.132 Sum_probs=93.6
Q ss_pred eeEEEEcCCCCchhHHHHHHhhCCCCCcc------------cC--------------------ceeeeeeEEEEECCeEE
Q psy4710 6 KKLVIVGDGACGKTCLLIVFSKDQFPEVY------------VP--------------------TVFENYVADIEVDSKQV 53 (192)
Q Consensus 6 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~------------~~--------------------~~~~~~~~~~~~~~~~~ 53 (192)
+||+++|+.++|||||+++|+...-.... .. ...+.......+...+.
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 58999999999999999998753211100 00 00001111223344556
Q ss_pred EEEEEeCCCCCcccccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhh
Q psy4710 54 ELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNK 133 (192)
Q Consensus 54 ~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 133 (192)
.+.++||||+++|.......+..+|++++|+|+..+-.-+. ......+... ...++++++||+|+..... ..+..
T Consensus 81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt--~~~~~~~~~~-~~~~iivviNK~D~~~~~~--~~~~~ 155 (406)
T TIGR02034 81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQT--RRHSYIASLL-GIRHVVLAVNKMDLVDYDE--EVFEN 155 (406)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCcccc--HHHHHHHHHc-CCCcEEEEEEecccccchH--HHHHH
Confidence 89999999999887666667889999999999987532221 1222233322 1346899999999865221 00000
Q ss_pred ccCCCCCHHHHHHHHHHcC--CceEEEeccCCcCCHHH
Q psy4710 134 MKQEPVKPEEGRAMAQKIN--AFAYLECSAKSKEGVRE 169 (192)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~gi~~ 169 (192)
..++...+.+..+ ..+++++||++|+|+++
T Consensus 156 ------i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 156 ------IKKDYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred ------HHHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 0122223333332 35799999999999985
No 242
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.76 E-value=1.3e-17 Score=128.19 Aligned_cols=158 Identities=12% Similarity=0.109 Sum_probs=99.6
Q ss_pred ccceeEEEEcCCCCchhHHHHHHhhCCC--CCc-------------------------c---cCceeeeeeEEEEECCeE
Q psy4710 3 AIRKKLVIVGDGACGKTCLLIVFSKDQF--PEV-------------------------Y---VPTVFENYVADIEVDSKQ 52 (192)
Q Consensus 3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~--~~~-------------------------~---~~~~~~~~~~~~~~~~~~ 52 (192)
...++|+++|+.++|||||+.+|+...- ... . .....+.......+...+
T Consensus 5 k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~ 84 (447)
T PLN00043 5 KVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTK 84 (447)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCC
Confidence 3478999999999999999998875211 000 0 000011111122345667
Q ss_pred EEEEEEeCCCCCcccccccccCCCCCEEEEEEECCChhhhh------chhhhhHHHHhhhCCCCc-EEEEeecccccCCc
Q psy4710 53 VELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLE------NIPEKWTPEVKHFCPNVP-IILVGNKKDLRNDP 125 (192)
Q Consensus 53 ~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~------~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~ 125 (192)
..+.++|+|||++|.......+..+|++|+|+|+.+. .++ ......+...... ++| +||++||+|+....
T Consensus 85 ~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~~~~~~~--gi~~iIV~vNKmD~~~~~ 161 (447)
T PLN00043 85 YYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHALLAFTL--GVKQMICCCNKMDATTPK 161 (447)
T ss_pred EEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHHHHHHHHHc--CCCcEEEEEEcccCCchh
Confidence 7899999999999998888889999999999999873 232 1111222222222 674 68899999976211
Q ss_pred cchhhhhhccCCCCCHHHHHHHHHHcC----CceEEEeccCCcCCHHH
Q psy4710 126 NTIKELNKMKQEPVKPEEGRAMAQKIN----AFAYLECSAKSKEGVRE 169 (192)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~Sa~~~~gi~~ 169 (192)
.....+. ...++...+....+ .++++++||++|+|+.+
T Consensus 162 ~~~~~~~------~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 162 YSKARYD------EIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred hhHHHHH------HHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 1000010 01234455555544 36899999999999853
No 243
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.75 E-value=3e-17 Score=117.70 Aligned_cols=161 Identities=23% Similarity=0.238 Sum_probs=112.1
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCccc--c------cccccC-
Q psy4710 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYD--R------LRPLSY- 74 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~--~------~~~~~~- 74 (192)
.-..|+|.|.||+|||||++++.+.+....+.|.++...... .++.+...++++||||.-+-. . .....+
T Consensus 167 ~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vG-hfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~ 245 (346)
T COG1084 167 DLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVG-HFERGYLRIQVIDTPGLLDRPLEERNEIERQAILALR 245 (346)
T ss_pred CCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEe-eeecCCceEEEecCCcccCCChHHhcHHHHHHHHHHH
Confidence 456799999999999999999999999888888877665433 466677799999999942211 1 111112
Q ss_pred CCCCEEEEEEECCChh--hhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcC
Q psy4710 75 PDTDVILMCFSIDSPD--SLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKIN 152 (192)
Q Consensus 75 ~~~~~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (192)
.-.++++|++|.+... +++.. ..++..++..+. .|+++|+||+|.... +.. ++.......-+
T Consensus 246 hl~~~IlF~~D~Se~cgy~lE~Q-~~L~~eIk~~f~-~p~v~V~nK~D~~~~------------e~~--~~~~~~~~~~~ 309 (346)
T COG1084 246 HLAGVILFLFDPSETCGYSLEEQ-ISLLEEIKELFK-APIVVVINKIDIADE------------EKL--EEIEASVLEEG 309 (346)
T ss_pred HhcCeEEEEEcCccccCCCHHHH-HHHHHHHHHhcC-CCeEEEEecccccch------------hHH--HHHHHHHHhhc
Confidence 2378999999998754 34443 356677777665 999999999998752 111 22222222223
Q ss_pred CceEEEeccCCcCCHHHHHHHHHHHHhhh
Q psy4710 153 AFAYLECSAKSKEGVREVFETATRAALQV 181 (192)
Q Consensus 153 ~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~ 181 (192)
......+++..+.+++.+-..+...+.+.
T Consensus 310 ~~~~~~~~~~~~~~~d~~~~~v~~~a~~~ 338 (346)
T COG1084 310 GEEPLKISATKGCGLDKLREEVRKTALEP 338 (346)
T ss_pred cccccceeeeehhhHHHHHHHHHHHhhch
Confidence 23456789999999998888888776655
No 244
>KOG4423|consensus
Probab=99.75 E-value=7.1e-20 Score=120.47 Aligned_cols=165 Identities=22% Similarity=0.370 Sum_probs=132.3
Q ss_pred eeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeee-EEEEE-CCeEEEEEEEeCCCCCcccccccccCCCCCEEEEE
Q psy4710 6 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYV-ADIEV-DSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMC 83 (192)
Q Consensus 6 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v 83 (192)
++++|+|..++|||+++.+++...+...+..+++..+. +.... +...+++++||+.||++|..+...+++.+++..+|
T Consensus 26 ~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~~~iV 105 (229)
T KOG4423|consen 26 FKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHGAFIV 105 (229)
T ss_pred hhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcceEEE
Confidence 68999999999999999999998888877777664442 22222 33456789999999999999999999999999999
Q ss_pred EECCChhhhhchhhhhHHHHhhhC-----CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEE
Q psy4710 84 FSIDSPDSLENIPEKWTPEVKHFC-----PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLE 158 (192)
Q Consensus 84 ~d~~~~~~~~~~~~~~~~~~~~~~-----~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (192)
+|++....++.. ..|.+.+.... .-.|+++..||+|..... ..-......++++..+....++
T Consensus 106 fdvt~s~tfe~~-skwkqdldsk~qLpng~Pv~~vllankCd~e~~a-----------~~~~~~~~d~f~kengf~gwte 173 (229)
T KOG4423|consen 106 FDVTRSLTFEPV-SKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSA-----------KNEATRQFDNFKKENGFEGWTE 173 (229)
T ss_pred EEccccccccHH-HHHHHhccCcccCCCCCcchheeccchhccChHh-----------hhhhHHHHHHHHhccCccceee
Confidence 999998888888 47887765432 246789999999986521 1122355667888888788999
Q ss_pred eccCCcCCHHHHHHHHHHHHhhhc
Q psy4710 159 CSAKSKEGVREVFETATRAALQVK 182 (192)
Q Consensus 159 ~Sa~~~~gi~~~~~~i~~~~~~~~ 182 (192)
+|++++.+++|.-..+++++....
T Consensus 174 ts~Kenkni~Ea~r~lVe~~lvnd 197 (229)
T KOG4423|consen 174 TSAKENKNIPEAQRELVEKILVND 197 (229)
T ss_pred eccccccChhHHHHHHHHHHHhhc
Confidence 999999999999999999887764
No 245
>PRK13351 elongation factor G; Reviewed
Probab=99.75 E-value=6.9e-18 Score=136.77 Aligned_cols=117 Identities=18% Similarity=0.166 Sum_probs=81.3
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCCC--------Cc-----ccC----ceeeeeeEEEEECCeEEEEEEEeCCCCCcc
Q psy4710 4 IRKKLVIVGDGACGKTCLLIVFSKDQFP--------EV-----YVP----TVFENYVADIEVDSKQVELALWDTAGQEDY 66 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~--------~~-----~~~----~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~ 66 (192)
...+|+|+|+.++|||||+++|+...-. .. ..+ ...+.......+...+..+.+|||||+.+|
T Consensus 7 ~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~df 86 (687)
T PRK13351 7 QIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHIDF 86 (687)
T ss_pred cccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHHH
Confidence 4569999999999999999999853210 00 000 000111111223345678999999999998
Q ss_pred cccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCC
Q psy4710 67 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRND 124 (192)
Q Consensus 67 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 124 (192)
...+...++.+|++++|+|+++....+.. ..| ..+... +.|+++++||+|+...
T Consensus 87 ~~~~~~~l~~aD~~ilVvd~~~~~~~~~~-~~~-~~~~~~--~~p~iiviNK~D~~~~ 140 (687)
T PRK13351 87 TGEVERSLRVLDGAVVVFDAVTGVQPQTE-TVW-RQADRY--GIPRLIFINKMDRVGA 140 (687)
T ss_pred HHHHHHHHHhCCEEEEEEeCCCCCCHHHH-HHH-HHHHhc--CCCEEEEEECCCCCCC
Confidence 88888889999999999999886544432 233 334333 7999999999998764
No 246
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.75 E-value=3.8e-17 Score=132.33 Aligned_cols=116 Identities=18% Similarity=0.033 Sum_probs=79.9
Q ss_pred eeEEEEcCCCCchhHHHHHHhhCCCCC-----ccc------------CceeeeeeEEEEECCeEEEEEEEeCCCCCcccc
Q psy4710 6 KKLVIVGDGACGKTCLLIVFSKDQFPE-----VYV------------PTVFENYVADIEVDSKQVELALWDTAGQEDYDR 68 (192)
Q Consensus 6 ~~i~v~G~~~~GKSsli~~l~~~~~~~-----~~~------------~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~ 68 (192)
.+|+|+|++++|||||+++|+...-.. ... ....+.......+...+..+.+|||||+.+|..
T Consensus 11 rni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~~~~ 90 (689)
T TIGR00484 11 RNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVDFTV 90 (689)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcchhH
Confidence 399999999999999999997522110 000 001111111223344567899999999998877
Q ss_pred cccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCc
Q psy4710 69 LRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDP 125 (192)
Q Consensus 69 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 125 (192)
.+...++.+|++++|+|+.+....+. ..++..+... +.|+++++||+|+....
T Consensus 91 ~~~~~l~~~D~~ilVvda~~g~~~~~--~~~~~~~~~~--~~p~ivviNK~D~~~~~ 143 (689)
T TIGR00484 91 EVERSLRVLDGAVAVLDAVGGVQPQS--ETVWRQANRY--EVPRIAFVNKMDKTGAN 143 (689)
T ss_pred HHHHHHHHhCEEEEEEeCCCCCChhH--HHHHHHHHHc--CCCEEEEEECCCCCCCC
Confidence 77888899999999999988643332 2344444443 78999999999997543
No 247
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.75 E-value=2.2e-17 Score=127.98 Aligned_cols=157 Identities=15% Similarity=0.118 Sum_probs=95.3
Q ss_pred ccceeEEEEcCCCCchhHHHHHHhhCCCCCccc-----------Cce---------------------eeeeeEEEEECC
Q psy4710 3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYV-----------PTV---------------------FENYVADIEVDS 50 (192)
Q Consensus 3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~-----------~~~---------------------~~~~~~~~~~~~ 50 (192)
...++|+++|++++|||||+++|+...-..... ... .+.......+..
T Consensus 25 ~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~ 104 (474)
T PRK05124 25 KSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFST 104 (474)
T ss_pred cCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEecc
Confidence 357999999999999999999987643211100 000 000111122344
Q ss_pred eEEEEEEEeCCCCCcccccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhh
Q psy4710 51 KQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKE 130 (192)
Q Consensus 51 ~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~ 130 (192)
+...+.++||||++.|.......+..+|++++|+|+..+-.-+. ......+... ...|+++++||+|+..... ..
T Consensus 105 ~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt--~~~~~l~~~l-g~~~iIvvvNKiD~~~~~~--~~ 179 (474)
T PRK05124 105 EKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQT--RRHSFIATLL-GIKHLVVAVNKMDLVDYSE--EV 179 (474)
T ss_pred CCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccc--hHHHHHHHHh-CCCceEEEEEeeccccchh--HH
Confidence 55689999999998886655556789999999999987522111 1222222222 1357899999999864221 00
Q ss_pred hhhccCCCCCHHHHHHHHHHcC---CceEEEeccCCcCCHHHH
Q psy4710 131 LNKMKQEPVKPEEGRAMAQKIN---AFAYLECSAKSKEGVREV 170 (192)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~Sa~~~~gi~~~ 170 (192)
+.. ...+...+....+ ..+++++||++|+|++++
T Consensus 180 ~~~------i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 180 FER------IREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred HHH------HHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence 000 0112222233322 368999999999999764
No 248
>KOG0462|consensus
Probab=99.74 E-value=2.9e-17 Score=124.44 Aligned_cols=167 Identities=19% Similarity=0.128 Sum_probs=115.2
Q ss_pred ceeEEEEcCCCCchhHHHHHHhhCCC--CC-------------cccCcee-eeeeEE-EEECCeEEEEEEEeCCCCCccc
Q psy4710 5 RKKLVIVGDGACGKTCLLIVFSKDQF--PE-------------VYVPTVF-ENYVAD-IEVDSKQVELALWDTAGQEDYD 67 (192)
Q Consensus 5 ~~~i~v~G~~~~GKSsli~~l~~~~~--~~-------------~~~~~~~-~~~~~~-~~~~~~~~~~~l~D~~g~~~~~ 67 (192)
--++.|+.+..-|||||..+|+...- .. .....++ ...... +..++..+.+.++|||||.+|.
T Consensus 60 iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvDFs 139 (650)
T KOG0462|consen 60 IRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVDFS 139 (650)
T ss_pred ccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccccc
Confidence 35789999999999999999886321 00 0011111 011111 1223566899999999999999
Q ss_pred ccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHH
Q psy4710 68 RLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAM 147 (192)
Q Consensus 68 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (192)
......+..++++|+|+|++.+-.-+.....| ..++. +.-+|.|+||+|+..+++. .+ .....++
T Consensus 140 ~EVsRslaac~G~lLvVDA~qGvqAQT~anf~-lAfe~---~L~iIpVlNKIDlp~adpe----------~V-~~q~~~l 204 (650)
T KOG0462|consen 140 GEVSRSLAACDGALLVVDASQGVQAQTVANFY-LAFEA---GLAIIPVLNKIDLPSADPE----------RV-ENQLFEL 204 (650)
T ss_pred ceehehhhhcCceEEEEEcCcCchHHHHHHHH-HHHHc---CCeEEEeeeccCCCCCCHH----------HH-HHHHHHH
Confidence 99999999999999999999864444432222 22222 7899999999999886541 11 1222233
Q ss_pred HHHcCCceEEEeccCCcCCHHHHHHHHHHHHhhhcccccc
Q psy4710 148 AQKINAFAYLECSAKSKEGVREVFETATRAALQVKKKKKG 187 (192)
Q Consensus 148 ~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~~~~~~~ 187 (192)
....+ .+.+.+||++|.|+++++++|++.+..++.....
T Consensus 205 F~~~~-~~~i~vSAK~G~~v~~lL~AII~rVPpP~~~~d~ 243 (650)
T KOG0462|consen 205 FDIPP-AEVIYVSAKTGLNVEELLEAIIRRVPPPKGIRDA 243 (650)
T ss_pred hcCCc-cceEEEEeccCccHHHHHHHHHhhCCCCCCCCCc
Confidence 33333 3789999999999999999999999888765544
No 249
>COG2262 HflX GTPases [General function prediction only]
Probab=99.74 E-value=5.3e-17 Score=119.73 Aligned_cols=156 Identities=21% Similarity=0.231 Sum_probs=108.6
Q ss_pred ceeEEEEcCCCCchhHHHHHHhhCCCCC-cccCceeeeeeEEEEECCeEEEEEEEeCCCCCc---------ccccccccC
Q psy4710 5 RKKLVIVGDGACGKTCLLIVFSKDQFPE-VYVPTVFENYVADIEVDSKQVELALWDTAGQED---------YDRLRPLSY 74 (192)
Q Consensus 5 ~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~---------~~~~~~~~~ 74 (192)
-..|.++|..|||||||+|+|.+..... ....++-+...+.+.+.+ +..+.+-||.|.-+ |.+... ..
T Consensus 192 ~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~-g~~vlLtDTVGFI~~LP~~LV~AFksTLE-E~ 269 (411)
T COG2262 192 IPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGD-GRKVLLTDTVGFIRDLPHPLVEAFKSTLE-EV 269 (411)
T ss_pred CCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCC-CceEEEecCccCcccCChHHHHHHHHHHH-Hh
Confidence 3579999999999999999999866543 333333344455555554 45789999999433 222222 23
Q ss_pred CCCCEEEEEEECCChhhhhchhhhhHHHHhhh-CCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCC
Q psy4710 75 PDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINA 153 (192)
Q Consensus 75 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (192)
..+|+++.|+|++++...+.+ +.....+... ....|+|+|.||+|+..+.. .........+
T Consensus 270 ~~aDlllhVVDaSdp~~~~~~-~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~----------------~~~~~~~~~~- 331 (411)
T COG2262 270 KEADLLLHVVDASDPEILEKL-EAVEDVLAEIGADEIPIILVLNKIDLLEDEE----------------ILAELERGSP- 331 (411)
T ss_pred hcCCEEEEEeecCChhHHHHH-HHHHHHHHHcCCCCCCEEEEEecccccCchh----------------hhhhhhhcCC-
Confidence 479999999999999666555 3455555543 34799999999999876321 1112222222
Q ss_pred ceEEEeccCCcCCHHHHHHHHHHHHhhh
Q psy4710 154 FAYLECSAKSKEGVREVFETATRAALQV 181 (192)
Q Consensus 154 ~~~~~~Sa~~~~gi~~~~~~i~~~~~~~ 181 (192)
..+.+||++++|++.+++.|...+...
T Consensus 332 -~~v~iSA~~~~gl~~L~~~i~~~l~~~ 358 (411)
T COG2262 332 -NPVFISAKTGEGLDLLRERIIELLSGL 358 (411)
T ss_pred -CeEEEEeccCcCHHHHHHHHHHHhhhc
Confidence 468899999999999999999988744
No 250
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.73 E-value=1.9e-17 Score=116.28 Aligned_cols=112 Identities=15% Similarity=0.070 Sum_probs=77.2
Q ss_pred eEEEEcCCCCchhHHHHHHhhCCCCCcccC----------------cee-eeeeEEEEEC--------CeEEEEEEEeCC
Q psy4710 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVP----------------TVF-ENYVADIEVD--------SKQVELALWDTA 61 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~----------------~~~-~~~~~~~~~~--------~~~~~~~l~D~~ 61 (192)
+|+++|+.++|||||+.+|+...-...... ..+ ........+. +..+.+.+||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 799999999999999999986431100000 000 0001112222 337889999999
Q ss_pred CCCcccccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeeccccc
Q psy4710 62 GQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLR 122 (192)
Q Consensus 62 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 122 (192)
|+.+|.......++.+|++++|+|+.++...+.. ..+..... .+.|+++++||+|+.
T Consensus 82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~--~~l~~~~~--~~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTE--TVLRQALK--ERVKPVLVINKIDRL 138 (222)
T ss_pred CccccHHHHHHHHHhcCeeEEEEECCCCCCHHHH--HHHHHHHH--cCCCEEEEEECCCcc
Confidence 9999998888899999999999999986443332 23333322 268999999999986
No 251
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.73 E-value=3.8e-17 Score=117.70 Aligned_cols=162 Identities=20% Similarity=0.174 Sum_probs=106.4
Q ss_pred EEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCccccc-------ccccCCCCCEE
Q psy4710 8 LVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRL-------RPLSYPDTDVI 80 (192)
Q Consensus 8 i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~-------~~~~~~~~~~~ 80 (192)
|.++|.|++|||||++++...+......|.++-....-+......-.|.+-|+||.-.-.+. .-..++.+.++
T Consensus 162 VGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~vL 241 (369)
T COG0536 162 VGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGLGLRFLRHIERTRVL 241 (369)
T ss_pred cccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEecCCCcEEEecCcccccccccCCCccHHHHHHHHhhhee
Confidence 67999999999999999999887766666665444332222244557999999994332211 12234568999
Q ss_pred EEEEECCChhh---hhchhhhhHHHHhhh---CCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCc
Q psy4710 81 LMCFSIDSPDS---LENIPEKWTPEVKHF---CPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAF 154 (192)
Q Consensus 81 i~v~d~~~~~~---~~~~~~~~~~~~~~~---~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (192)
++|+|++..+. .++. +.+...+..+ ..++|.+||+||+|+..+.+ ........+.+.....
T Consensus 242 ~hviD~s~~~~~dp~~~~-~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e------------~~~~~~~~l~~~~~~~ 308 (369)
T COG0536 242 LHVIDLSPIDGRDPIEDY-QTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEE------------ELEELKKALAEALGWE 308 (369)
T ss_pred EEEEecCcccCCCHHHHH-HHHHHHHHHhhHHhccCceEEEEeccCCCcCHH------------HHHHHHHHHHHhcCCC
Confidence 99999986542 4443 2444555544 35899999999999765321 1111122233333322
Q ss_pred eEEEeccCCcCCHHHHHHHHHHHHhhhc
Q psy4710 155 AYLECSAKSKEGVREVFETATRAALQVK 182 (192)
Q Consensus 155 ~~~~~Sa~~~~gi~~~~~~i~~~~~~~~ 182 (192)
..+.+||.+++|++++...+.+.+...+
T Consensus 309 ~~~~ISa~t~~g~~~L~~~~~~~l~~~~ 336 (369)
T COG0536 309 VFYLISALTREGLDELLRALAELLEETK 336 (369)
T ss_pred cceeeehhcccCHHHHHHHHHHHHHHhh
Confidence 2223999999999999999988887764
No 252
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.72 E-value=3.2e-17 Score=125.95 Aligned_cols=165 Identities=16% Similarity=0.134 Sum_probs=102.1
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCCCC---cccCcee--eeeeEE-----------E---EEC---------------
Q psy4710 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPE---VYVPTVF--ENYVAD-----------I---EVD--------------- 49 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~---~~~~~~~--~~~~~~-----------~---~~~--------------- 49 (192)
.+++|+++|+...|||||+.+|.+..... ......+ --+... . ...
T Consensus 33 ~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (460)
T PTZ00327 33 ATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGHK 112 (460)
T ss_pred CcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCccccccccccccc
Confidence 36899999999999999999999743211 1000000 000000 0 000
Q ss_pred -CeEEEEEEEeCCCCCcccccccccCCCCCEEEEEEECCChh-hhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccc
Q psy4710 50 -SKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPD-SLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNT 127 (192)
Q Consensus 50 -~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~ 127 (192)
.....+.++|+||++.|.......+..+|++++|+|+.++. ..+. .+.+ ..+... .-.|+|+++||+|+.+....
T Consensus 113 ~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT-~ehl-~i~~~l-gi~~iIVvlNKiDlv~~~~~ 189 (460)
T PTZ00327 113 MTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQT-SEHL-AAVEIM-KLKHIIILQNKIDLVKEAQA 189 (460)
T ss_pred ccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhh-HHHH-HHHHHc-CCCcEEEEEecccccCHHHH
Confidence 00246899999999998877777778999999999998741 1111 1222 222221 13468999999998752211
Q ss_pred hhhhhhccCCCCCHHHHHHHHHH--cCCceEEEeccCCcCCHHHHHHHHHHHHhhh
Q psy4710 128 IKELNKMKQEPVKPEEGRAMAQK--INAFAYLECSAKSKEGVREVFETATRAALQV 181 (192)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~ 181 (192)
.+. .++..++... ....+++++||++|+|+++|++.|...+...
T Consensus 190 ~~~----------~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp~~ 235 (460)
T PTZ00327 190 QDQ----------YEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIPIP 235 (460)
T ss_pred HHH----------HHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCCCC
Confidence 111 1122222211 1346899999999999999999999766544
No 253
>KOG0077|consensus
Probab=99.71 E-value=2.2e-18 Score=111.45 Aligned_cols=169 Identities=20% Similarity=0.281 Sum_probs=113.4
Q ss_pred ceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEEE
Q psy4710 5 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF 84 (192)
Q Consensus 5 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 84 (192)
.=|++++|.-|+|||||++.|...+..+. .|+.-.+.. .....+++++.+|.+||..-+..|..++..+|++++.+
T Consensus 20 ~gKllFlGLDNAGKTTLLHMLKdDrl~qh-vPTlHPTSE---~l~Ig~m~ftt~DLGGH~qArr~wkdyf~~v~~iv~lv 95 (193)
T KOG0077|consen 20 FGKLLFLGLDNAGKTTLLHMLKDDRLGQH-VPTLHPTSE---ELSIGGMTFTTFDLGGHLQARRVWKDYFPQVDAIVYLV 95 (193)
T ss_pred CceEEEEeecCCchhhHHHHHcccccccc-CCCcCCChH---HheecCceEEEEccccHHHHHHHHHHHHhhhceeEeee
Confidence 45899999999999999999988775443 222211111 23446789999999999999999999999999999999
Q ss_pred ECCChhhhhchhhhhHHHHhhh-CCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcC--CceEEEecc
Q psy4710 85 SIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKIN--AFAYLECSA 161 (192)
Q Consensus 85 d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Sa 161 (192)
|+.|.+.+.+....+...+... ..+.|+++.+||+|...+-...+....+........++.......+ -..++.||.
T Consensus 96 da~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evfmcsi 175 (193)
T KOG0077|consen 96 DAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAASEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEVFMCSI 175 (193)
T ss_pred ehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcccHHHHHHHHHHHHHhcccccccccCCCCCeEEEEEEEE
Confidence 9999998888876555555443 3589999999999987754222111100000000000000000001 135788999
Q ss_pred CCcCCHHHHHHHHHHH
Q psy4710 162 KSKEGVREVFETATRA 177 (192)
Q Consensus 162 ~~~~gi~~~~~~i~~~ 177 (192)
..+.|.-+.|.|+...
T Consensus 176 ~~~~gy~e~fkwl~qy 191 (193)
T KOG0077|consen 176 VRKMGYGEGFKWLSQY 191 (193)
T ss_pred EccCccceeeeehhhh
Confidence 9888888888876543
No 254
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.71 E-value=2.5e-17 Score=104.93 Aligned_cols=105 Identities=25% Similarity=0.383 Sum_probs=66.7
Q ss_pred eEEEEcCCCCchhHHHHHHhhCCCCCcc-cCceeeee-eEEEEECCeEEEEEEEeCCCCCcccc---------cccccCC
Q psy4710 7 KLVIVGDGACGKTCLLIVFSKDQFPEVY-VPTVFENY-VADIEVDSKQVELALWDTAGQEDYDR---------LRPLSYP 75 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~---------~~~~~~~ 75 (192)
+|+++|.+|+|||||+|+|++....... .+..+... ...+..+.. .+.++||||...... .....+.
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~ 78 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNK--KFILVDTPGINDGESQDNDGKEIRKFLEQIS 78 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTE--EEEEEESSSCSSSSHHHHHHHHHHHHHHHHC
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeecee--eEEEEeCCCCcccchhhHHHHHHHHHHHHHH
Confidence 6999999999999999999986432222 22222221 223334444 457999999543211 1222337
Q ss_pred CCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeec
Q psy4710 76 DTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNK 118 (192)
Q Consensus 76 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK 118 (192)
.+|++++|+|..++ .......++..++ .+.|+++|+||
T Consensus 79 ~~d~ii~vv~~~~~--~~~~~~~~~~~l~---~~~~~i~v~NK 116 (116)
T PF01926_consen 79 KSDLIIYVVDASNP--ITEDDKNILRELK---NKKPIILVLNK 116 (116)
T ss_dssp TESEEEEEEETTSH--SHHHHHHHHHHHH---TTSEEEEEEES
T ss_pred HCCEEEEEEECCCC--CCHHHHHHHHHHh---cCCCEEEEEcC
Confidence 89999999997773 2222234444454 48999999998
No 255
>PRK12739 elongation factor G; Reviewed
Probab=99.71 E-value=6.7e-17 Score=130.84 Aligned_cols=116 Identities=20% Similarity=0.070 Sum_probs=79.6
Q ss_pred ceeEEEEcCCCCchhHHHHHHhhCCCCC-----cc------------cCceeeeeeEEEEECCeEEEEEEEeCCCCCccc
Q psy4710 5 RKKLVIVGDGACGKTCLLIVFSKDQFPE-----VY------------VPTVFENYVADIEVDSKQVELALWDTAGQEDYD 67 (192)
Q Consensus 5 ~~~i~v~G~~~~GKSsli~~l~~~~~~~-----~~------------~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~ 67 (192)
-.+|+|+|++++|||||+++|+...-.. .. .....+.......+...+..+.++||||+.+|.
T Consensus 8 irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~f~ 87 (691)
T PRK12739 8 TRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVDFT 87 (691)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHHHH
Confidence 4589999999999999999997521100 00 001111111122333456789999999998887
Q ss_pred ccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCC
Q psy4710 68 RLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRND 124 (192)
Q Consensus 68 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 124 (192)
..+...++.+|++++|+|+.++- +...+.++..+... +.|.++++||+|+...
T Consensus 88 ~e~~~al~~~D~~ilVvDa~~g~--~~qt~~i~~~~~~~--~~p~iv~iNK~D~~~~ 140 (691)
T PRK12739 88 IEVERSLRVLDGAVAVFDAVSGV--EPQSETVWRQADKY--GVPRIVFVNKMDRIGA 140 (691)
T ss_pred HHHHHHHHHhCeEEEEEeCCCCC--CHHHHHHHHHHHHc--CCCEEEEEECCCCCCC
Confidence 77888888999999999998763 22223444444443 7999999999999753
No 256
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.71 E-value=4e-17 Score=131.11 Aligned_cols=155 Identities=17% Similarity=0.114 Sum_probs=94.3
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCCCCccc----------Ccee----------------------eeeeEEEEECCe
Q psy4710 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYV----------PTVF----------------------ENYVADIEVDSK 51 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~----------~~~~----------------------~~~~~~~~~~~~ 51 (192)
..++|+++|++++|||||+++|+...-..... .... +.......+...
T Consensus 23 ~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~~ 102 (632)
T PRK05506 23 SLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFATP 102 (632)
T ss_pred CeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEccC
Confidence 57899999999999999999998743221100 0000 000111123344
Q ss_pred EEEEEEEeCCCCCcccccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhh
Q psy4710 52 QVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKEL 131 (192)
Q Consensus 52 ~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~ 131 (192)
+..+.++||||++.|.......+..+|++++|+|+..+..-+. ......+... ...|++|++||+|+...... .+
T Consensus 103 ~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t--~e~~~~~~~~-~~~~iivvvNK~D~~~~~~~--~~ 177 (632)
T PRK05506 103 KRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQT--RRHSFIASLL-GIRHVVLAVNKMDLVDYDQE--VF 177 (632)
T ss_pred CceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccC--HHHHHHHHHh-CCCeEEEEEEecccccchhH--HH
Confidence 5578999999998876555566789999999999976532111 1222233322 13578899999998642110 00
Q ss_pred hhccCCCCCHHHHHHHHHHcC--CceEEEeccCCcCCHHH
Q psy4710 132 NKMKQEPVKPEEGRAMAQKIN--AFAYLECSAKSKEGVRE 169 (192)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~gi~~ 169 (192)
.. ...+...+...++ ..+++++||++|+|+++
T Consensus 178 ~~------i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 178 DE------IVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred HH------HHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 00 0122223333333 25799999999999874
No 257
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.71 E-value=2.6e-16 Score=115.86 Aligned_cols=81 Identities=17% Similarity=0.215 Sum_probs=53.2
Q ss_pred EEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeE--EEE--------------------EC-CeEEEEEEEeCCCC-
Q psy4710 8 LVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA--DIE--------------------VD-SKQVELALWDTAGQ- 63 (192)
Q Consensus 8 i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~--~~~--------------------~~-~~~~~~~l~D~~g~- 63 (192)
|+++|.|++|||||+|+|++........|..+..... ... .+ ...+.+++||+||.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 5899999999999999999987543222332211111 100 11 13478999999997
Q ss_pred ---Ccccccccc---cCCCCCEEEEEEECCC
Q psy4710 64 ---EDYDRLRPL---SYPDTDVILMCFSIDS 88 (192)
Q Consensus 64 ---~~~~~~~~~---~~~~~~~~i~v~d~~~ 88 (192)
+.+...... .++++|++++|+|++.
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~ 111 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDASG 111 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence 333333223 4789999999999973
No 258
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.71 E-value=3.4e-18 Score=115.08 Aligned_cols=120 Identities=20% Similarity=0.240 Sum_probs=75.7
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEE-CCeEEEEEEEeCCCCCccccccccc---CCCCCE
Q psy4710 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEV-DSKQVELALWDTAGQEDYDRLRPLS---YPDTDV 79 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~g~~~~~~~~~~~---~~~~~~ 79 (192)
..-.|+++|++|||||+|..+|..+....+.... .... ...+ ......+.++|+|||.+.+...... .+.+.+
T Consensus 2 k~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~-e~n~--~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~ 78 (181)
T PF09439_consen 2 KRPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSM-ENNI--AYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKG 78 (181)
T ss_dssp ---EEEEE-STTSSHHHHHHHHHHSS---B---S-SEEE--ECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEE
T ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCcCCeeccc-cCCc--eEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCE
Confidence 3457999999999999999999999655443222 1111 1111 2244578999999998877644443 678999
Q ss_pred EEEEEECCC-hhhhhchhhhhHHHHhhh---CCCCcEEEEeecccccCCcc
Q psy4710 80 ILMCFSIDS-PDSLENIPEKWTPEVKHF---CPNVPIILVGNKKDLRNDPN 126 (192)
Q Consensus 80 ~i~v~d~~~-~~~~~~~~~~~~~~~~~~---~~~~p~ivv~nK~D~~~~~~ 126 (192)
+|||+|.+. ...+....++++..+... ....|++|++||.|+..+.+
T Consensus 79 IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~~ 129 (181)
T PF09439_consen 79 IIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAKP 129 (181)
T ss_dssp EEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT---
T ss_pred EEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccCC
Confidence 999999975 445666666666665542 25789999999999987544
No 259
>PRK00007 elongation factor G; Reviewed
Probab=99.70 E-value=1.7e-16 Score=128.40 Aligned_cols=116 Identities=18% Similarity=0.068 Sum_probs=78.2
Q ss_pred eeEEEEcCCCCchhHHHHHHhhCC--CCC---cc------------cCceeeeeeEEEEECCeEEEEEEEeCCCCCcccc
Q psy4710 6 KKLVIVGDGACGKTCLLIVFSKDQ--FPE---VY------------VPTVFENYVADIEVDSKQVELALWDTAGQEDYDR 68 (192)
Q Consensus 6 ~~i~v~G~~~~GKSsli~~l~~~~--~~~---~~------------~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~ 68 (192)
.+|+|+|++++|||||+++|+... ... .. .....+.......+...+..+.++||||+.+|..
T Consensus 11 rni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~f~~ 90 (693)
T PRK00007 11 RNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVDFTI 90 (693)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHHHHH
Confidence 499999999999999999997411 100 00 0011111111222333456899999999988776
Q ss_pred cccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCc
Q psy4710 69 LRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDP 125 (192)
Q Consensus 69 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 125 (192)
.....++.+|++++|+|+...-..+ ....+..+... +.|.++++||+|+....
T Consensus 91 ev~~al~~~D~~vlVvda~~g~~~q--t~~~~~~~~~~--~~p~iv~vNK~D~~~~~ 143 (693)
T PRK00007 91 EVERSLRVLDGAVAVFDAVGGVEPQ--SETVWRQADKY--KVPRIAFVNKMDRTGAD 143 (693)
T ss_pred HHHHHHHHcCEEEEEEECCCCcchh--hHHHHHHHHHc--CCCEEEEEECCCCCCCC
Confidence 6677788999999999988753222 23444455444 78999999999997533
No 260
>KOG1191|consensus
Probab=99.70 E-value=1.5e-16 Score=119.35 Aligned_cols=169 Identities=22% Similarity=0.228 Sum_probs=111.9
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCc-ccccc--------cccC
Q psy4710 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQED-YDRLR--------PLSY 74 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-~~~~~--------~~~~ 74 (192)
..++|+++|+||+|||||+|+|.+.........++++.......++..++++.+.||+|..+ -.+.. ...+
T Consensus 267 ~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~~ 346 (531)
T KOG1191|consen 267 SGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARKRI 346 (531)
T ss_pred cCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHHHHH
Confidence 46899999999999999999999999888777777777776667778889999999999654 11111 2245
Q ss_pred CCCCEEEEEEECCChhhhhchh-hhhHHHHhhhC-------CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHH
Q psy4710 75 PDTDVILMCFSIDSPDSLENIP-EKWTPEVKHFC-------PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRA 146 (192)
Q Consensus 75 ~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~-------~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (192)
+.+|++++|+|+.....-+.+. ...+....... ...|++++.||.|+...-..... ..+.....
T Consensus 347 ~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~------~~~~~~~~-- 418 (531)
T KOG1191|consen 347 ERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTK------IPVVYPSA-- 418 (531)
T ss_pred hhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccC------Cceecccc--
Confidence 6899999999994422222221 12222222111 24799999999999875221100 00000000
Q ss_pred HHHHcCCceE-EEeccCCcCCHHHHHHHHHHHHhhhc
Q psy4710 147 MAQKINAFAY-LECSAKSKEGVREVFETATRAALQVK 182 (192)
Q Consensus 147 ~~~~~~~~~~-~~~Sa~~~~gi~~~~~~i~~~~~~~~ 182 (192)
.-.+.+++ .++|+++++|++++.+.+...+....
T Consensus 419 --~~~~~~~i~~~vs~~tkeg~~~L~~all~~~~~~~ 453 (531)
T KOG1191|consen 419 --EGRSVFPIVVEVSCTTKEGCERLSTALLNIVERLV 453 (531)
T ss_pred --ccCcccceEEEeeechhhhHHHHHHHHHHHHHHhh
Confidence 11122344 45999999999999999888776653
No 261
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.70 E-value=5.6e-16 Score=107.61 Aligned_cols=165 Identities=15% Similarity=0.143 Sum_probs=99.8
Q ss_pred eeEEEEcCCCCchhHHHHHHhhCCCCCccc-CceeeeeeEEEEECCeEEEEEEEeCCCCCccccc-----------cccc
Q psy4710 6 KKLVIVGDGACGKTCLLIVFSKDQFPEVYV-PTVFENYVADIEVDSKQVELALWDTAGQEDYDRL-----------RPLS 73 (192)
Q Consensus 6 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~-----------~~~~ 73 (192)
++|+++|.+|+|||||+|++++........ ....+...........+..+.++||||..+.... ....
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~ 80 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLS 80 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHHhc
Confidence 589999999999999999999876543321 1111111111112224467999999995443210 1123
Q ss_pred CCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCC---CCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHH
Q psy4710 74 YPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP---NVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQK 150 (192)
Q Consensus 74 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~---~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (192)
.++.|++|+|+++.+ +.......+..+...+. -.++++++|+.|............ . .....+.+.+.
T Consensus 81 ~~g~~~illVi~~~~---~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~----~--~~~~l~~l~~~ 151 (196)
T cd01852 81 APGPHAFLLVVPLGR---FTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLE----N--SCEALKRLLEK 151 (196)
T ss_pred CCCCEEEEEEEECCC---cCHHHHHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHH----h--ccHHHHHHHHH
Confidence 467899999999876 23333344555554332 268999999999876432211111 0 12344555555
Q ss_pred cCCceEEEe-----ccCCcCCHHHHHHHHHHHHhh
Q psy4710 151 INAFAYLEC-----SAKSKEGVREVFETATRAALQ 180 (192)
Q Consensus 151 ~~~~~~~~~-----Sa~~~~gi~~~~~~i~~~~~~ 180 (192)
.+. -++.. ++..+.++++|++.|.+.+.+
T Consensus 152 c~~-r~~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~ 185 (196)
T cd01852 152 CGG-RYVAFNNKAKGEEQEQQVKELLAKVESMVKE 185 (196)
T ss_pred hCC-eEEEEeCCCCcchhHHHHHHHHHHHHHHHHh
Confidence 543 22222 256778899999998888776
No 262
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.69 E-value=7.9e-16 Score=111.73 Aligned_cols=116 Identities=21% Similarity=0.252 Sum_probs=74.1
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCCCCcc----------cCcee-eeeeEEEEECCeEEEEEEEeCCCCCcccc----
Q psy4710 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVY----------VPTVF-ENYVADIEVDSKQVELALWDTAGQEDYDR---- 68 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~----------~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~---- 68 (192)
..++|+++|++|+|||||+|+|++..+.... .++.. ......+..++..+.+.+|||||..++..
T Consensus 3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~ 82 (276)
T cd01850 3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDC 82 (276)
T ss_pred cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhh
Confidence 4689999999999999999999998765432 12211 11223344456668899999999433211
Q ss_pred ----------------------cccccCC--CCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccC
Q psy4710 69 ----------------------LRPLSYP--DTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN 123 (192)
Q Consensus 69 ----------------------~~~~~~~--~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 123 (192)
.+...+. .+|+++++++.+. ..+......++..+.. ..|+++|+||+|+..
T Consensus 83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~-~~l~~~D~~~lk~l~~---~v~vi~VinK~D~l~ 157 (276)
T cd01850 83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTG-HGLKPLDIEFMKRLSK---RVNIIPVIAKADTLT 157 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCC-CCCCHHHHHHHHHHhc---cCCEEEEEECCCcCC
Confidence 1112233 3677788877664 2233332234444443 699999999999965
No 263
>KOG0090|consensus
Probab=99.68 E-value=1.1e-16 Score=108.03 Aligned_cols=168 Identities=15% Similarity=0.155 Sum_probs=108.1
Q ss_pred ceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCC---CCCEEE
Q psy4710 5 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYP---DTDVIL 81 (192)
Q Consensus 5 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~---~~~~~i 81 (192)
.-.|+++|+.+||||+|..+|..+....+. +........+..+.-.++++|.|||.+.+.....++. .+-+++
T Consensus 38 ~~~Vll~Gl~dSGKT~LF~qL~~gs~~~Tv----tSiepn~a~~r~gs~~~~LVD~PGH~rlR~kl~e~~~~~~~akaiV 113 (238)
T KOG0090|consen 38 QNAVLLVGLSDSGKTSLFTQLITGSHRGTV----TSIEPNEATYRLGSENVTLVDLPGHSRLRRKLLEYLKHNYSAKAIV 113 (238)
T ss_pred CCcEEEEecCCCCceeeeeehhcCCccCee----eeeccceeeEeecCcceEEEeCCCcHHHHHHHHHHccccccceeEE
Confidence 457999999999999999999988554332 1111122233333445899999999887766555555 789999
Q ss_pred EEEECCC-hhhhhchhhhhHHHHhhh---CCCCcEEEEeecccccCCccchhhhhhcc----------------------
Q psy4710 82 MCFSIDS-PDSLENIPEKWTPEVKHF---CPNVPIILVGNKKDLRNDPNTIKELNKMK---------------------- 135 (192)
Q Consensus 82 ~v~d~~~-~~~~~~~~~~~~~~~~~~---~~~~p~ivv~nK~D~~~~~~~~~~~~~~~---------------------- 135 (192)
||+|... .....+..+.++..+... ....|++|+.||.|+..+.........+.
T Consensus 114 FVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~~ 193 (238)
T KOG0090|consen 114 FVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISDEDIA 193 (238)
T ss_pred EEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhcccccccc
Confidence 9999865 234555555666665543 34789999999999987665422111100
Q ss_pred CCCCCHHHHHH--HHHHc-CCceEEEeccCCcCCHHHHHHHHHHH
Q psy4710 136 QEPVKPEEGRA--MAQKI-NAFAYLECSAKSKEGVREVFETATRA 177 (192)
Q Consensus 136 ~~~~~~~~~~~--~~~~~-~~~~~~~~Sa~~~~gi~~~~~~i~~~ 177 (192)
.+...-.++.. |.+-- ..+.|.+.|++++ +++++-+|+.++
T Consensus 194 ~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~ 237 (238)
T KOG0090|consen 194 KDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREA 237 (238)
T ss_pred ccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHh
Confidence 01111111122 22211 2257889999998 899999998765
No 264
>KOG1145|consensus
Probab=99.67 E-value=1.3e-15 Score=115.71 Aligned_cols=166 Identities=17% Similarity=0.168 Sum_probs=113.2
Q ss_pred ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEE
Q psy4710 3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 81 (192)
Q Consensus 3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i 81 (192)
+++.-|-|+|+..-|||||+.+|-+..........++.-. ...+... .+-.+++.|||||.-|..++..-...+|+++
T Consensus 151 ~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p-~G~~iTFLDTPGHaAF~aMRaRGA~vtDIvV 229 (683)
T KOG1145|consen 151 PRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLP-SGKSITFLDTPGHAAFSAMRARGANVTDIVV 229 (683)
T ss_pred CCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecC-CCCEEEEecCCcHHHHHHHHhccCccccEEE
Confidence 5678899999999999999999998887665333322211 2233445 4468999999999999999988888999999
Q ss_pred EEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEecc
Q psy4710 82 MCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSA 161 (192)
Q Consensus 82 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 161 (192)
+|+.+.|.---+.. .-+.-. ...+.|+||.+||+|..+.++..-..+-+ ..+....+.-+.++++++||
T Consensus 230 LVVAadDGVmpQT~--EaIkhA--k~A~VpiVvAinKiDkp~a~pekv~~eL~-------~~gi~~E~~GGdVQvipiSA 298 (683)
T KOG1145|consen 230 LVVAADDGVMPQTL--EAIKHA--KSANVPIVVAINKIDKPGANPEKVKRELL-------SQGIVVEDLGGDVQVIPISA 298 (683)
T ss_pred EEEEccCCccHhHH--HHHHHH--HhcCCCEEEEEeccCCCCCCHHHHHHHHH-------HcCccHHHcCCceeEEEeec
Confidence 99999885211111 111111 22389999999999987654421111100 00111222234578999999
Q ss_pred CCcCCHHHHHHHHHHHHhh
Q psy4710 162 KSKEGVREVFETATRAALQ 180 (192)
Q Consensus 162 ~~~~gi~~~~~~i~~~~~~ 180 (192)
++|+|++.|-+.+.-.+.-
T Consensus 299 l~g~nl~~L~eaill~Ae~ 317 (683)
T KOG1145|consen 299 LTGENLDLLEEAILLLAEV 317 (683)
T ss_pred ccCCChHHHHHHHHHHHHH
Confidence 9999999999987655544
No 265
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.66 E-value=3.4e-16 Score=115.49 Aligned_cols=157 Identities=13% Similarity=0.152 Sum_probs=99.7
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCC--CCCcc----------------------cC------ceeeeeeEEEEECCeEE
Q psy4710 4 IRKKLVIVGDGACGKTCLLIVFSKDQ--FPEVY----------------------VP------TVFENYVADIEVDSKQV 53 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~--~~~~~----------------------~~------~~~~~~~~~~~~~~~~~ 53 (192)
.+++++++|+..+|||||+-+|+... ++... +. .+.+.......++.+.+
T Consensus 6 ph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k~ 85 (428)
T COG5256 6 PHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDKY 85 (428)
T ss_pred CceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCCc
Confidence 57999999999999999998887632 11100 00 01111122234556667
Q ss_pred EEEEEeCCCCCcccccccccCCCCCEEEEEEECCChh---h--hhchhhhhHHHHhhhCCCCcEEEEeecccccCCccch
Q psy4710 54 ELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPD---S--LENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTI 128 (192)
Q Consensus 54 ~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---~--~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~ 128 (192)
.++++|+|||.+|-........++|++|+|+|+.+++ . ..... .....+.+...-..+||++||+|..+- ..
T Consensus 86 ~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQt-rEH~~La~tlGi~~lIVavNKMD~v~w--de 162 (428)
T COG5256 86 NFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQT-REHAFLARTLGIKQLIVAVNKMDLVSW--DE 162 (428)
T ss_pred eEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCch-hHHHHHHHhcCCceEEEEEEccccccc--CH
Confidence 8999999999999988888889999999999998863 1 11221 122222232334678999999999862 22
Q ss_pred hhhhhccCCCCCHHHHHHHHHHcC----CceEEEeccCCcCCHHH
Q psy4710 129 KELNKMKQEPVKPEEGRAMAQKIN----AFAYLECSAKSKEGVRE 169 (192)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~Sa~~~~gi~~ 169 (192)
+.++.+ ..+...+.+..+ .++|+++|+..|+|+.+
T Consensus 163 ~rf~ei------~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~ 201 (428)
T COG5256 163 ERFEEI------VSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTK 201 (428)
T ss_pred HHHHHH------HHHHHHHHHHcCCCccCCeEEecccccCCcccc
Confidence 222211 112222433332 26799999999999854
No 266
>PRK09866 hypothetical protein; Provisional
Probab=99.65 E-value=9.2e-15 Score=114.12 Aligned_cols=109 Identities=16% Similarity=0.192 Sum_probs=71.0
Q ss_pred EEEEEeCCCCCcc-----cccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccch
Q psy4710 54 ELALWDTAGQEDY-----DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTI 128 (192)
Q Consensus 54 ~~~l~D~~g~~~~-----~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~ 128 (192)
.+.++||||.... .......+..+|++++|+|.....+..+ ..+...++....+.|+++|+||+|+....
T Consensus 231 QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D--eeIlk~Lkk~~K~~PVILVVNKIDl~dre--- 305 (741)
T PRK09866 231 QLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD--EEVREAILAVGQSVPLYVLVNKFDQQDRN--- 305 (741)
T ss_pred CEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH--HHHHHHHHhcCCCCCEEEEEEcccCCCcc---
Confidence 5788999996432 1122346788999999999987432222 34555555543336999999999985321
Q ss_pred hhhhhccCCCCCHHHHHHHHH------HcCCceEEEeccCCcCCHHHHHHHHHH
Q psy4710 129 KELNKMKQEPVKPEEGRAMAQ------KINAFAYLECSAKSKEGVREVFETATR 176 (192)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~Sa~~~~gi~~~~~~i~~ 176 (192)
....+....+.. ......+|++||+.|.|++++++.|..
T Consensus 306 ---------eddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 306 ---------SDDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred ---------cchHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence 111222223221 112236899999999999999999887
No 267
>KOG1490|consensus
Probab=99.64 E-value=4.5e-16 Score=117.08 Aligned_cols=168 Identities=18% Similarity=0.126 Sum_probs=119.4
Q ss_pred ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccc---------c
Q psy4710 3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPL---------S 73 (192)
Q Consensus 3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~---------~ 73 (192)
...-.++++|.|++|||||++.+........+.++++...... .+++.-..++++||||.-+......+ .
T Consensus 166 p~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vG-H~dykYlrwQViDTPGILD~plEdrN~IEmqsITAL 244 (620)
T KOG1490|consen 166 PNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVG-HLDYKYLRWQVIDTPGILDRPEEDRNIIEMQIITAL 244 (620)
T ss_pred CCcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhh-hhhhheeeeeecCCccccCcchhhhhHHHHHHHHHH
Confidence 3456789999999999999999999887776666665444222 45666678999999995433222111 2
Q ss_pred CCCCCEEEEEEECCChh--hhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHH--HHHHH
Q psy4710 74 YPDTDVILMCFSIDSPD--SLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEG--RAMAQ 149 (192)
Q Consensus 74 ~~~~~~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 149 (192)
.+--.+++|++|++... +..... .++..++..+.+.|+|+|+||+|+... +.+.++.. .+...
T Consensus 245 AHLraaVLYfmDLSe~CGySva~Qv-kLfhsIKpLFaNK~~IlvlNK~D~m~~------------edL~~~~~~ll~~~~ 311 (620)
T KOG1490|consen 245 AHLRSAVLYFMDLSEMCGYSVAAQV-KLYHSIKPLFANKVTILVLNKIDAMRP------------EDLDQKNQELLQTII 311 (620)
T ss_pred HHhhhhheeeeechhhhCCCHHHHH-HHHHHhHHHhcCCceEEEeecccccCc------------cccCHHHHHHHHHHH
Confidence 23356789999998854 333332 577788888889999999999999874 33433332 22223
Q ss_pred HcCCceEEEeccCCcCCHHHHHHHHHHHHhhhccc
Q psy4710 150 KINAFAYLECSAKSKEGVREVFETATRAALQVKKK 184 (192)
Q Consensus 150 ~~~~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~~~~ 184 (192)
.-+.++++++|..+.+|+-++....++.++..+-.
T Consensus 312 ~~~~v~v~~tS~~~eegVm~Vrt~ACe~LLa~RVE 346 (620)
T KOG1490|consen 312 DDGNVKVVQTSCVQEEGVMDVRTTACEALLAARVE 346 (620)
T ss_pred hccCceEEEecccchhceeeHHHHHHHHHHHHHHH
Confidence 33447999999999999999999988888887643
No 268
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.64 E-value=4.5e-15 Score=111.19 Aligned_cols=160 Identities=19% Similarity=0.171 Sum_probs=112.3
Q ss_pred eeEEEEcCCCCchhHHHHHHhhCCCC--C-------------cccCceee-eeeEEEEE---CCeEEEEEEEeCCCCCcc
Q psy4710 6 KKLVIVGDGACGKTCLLIVFSKDQFP--E-------------VYVPTVFE-NYVADIEV---DSKQVELALWDTAGQEDY 66 (192)
Q Consensus 6 ~~i~v~G~~~~GKSsli~~l~~~~~~--~-------------~~~~~~~~-~~~~~~~~---~~~~~~~~l~D~~g~~~~ 66 (192)
.+..++.+...|||||..+++...-. . ......+. .....+.+ +++.+.+.++|||||.+|
T Consensus 10 RNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVDF 89 (603)
T COG0481 10 RNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF 89 (603)
T ss_pred cceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccce
Confidence 46788999999999999998763211 0 00111111 01111122 457899999999999999
Q ss_pred cccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHH
Q psy4710 67 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRA 146 (192)
Q Consensus 67 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (192)
.......+..|.++++++|++.+-.-+.+...+ ..+.. +.-+|-|+||+|+..+++ ....++
T Consensus 90 sYEVSRSLAACEGalLvVDAsQGveAQTlAN~Y-lAle~---~LeIiPViNKIDLP~Adp--------------ervk~e 151 (603)
T COG0481 90 SYEVSRSLAACEGALLVVDASQGVEAQTLANVY-LALEN---NLEIIPVLNKIDLPAADP--------------ERVKQE 151 (603)
T ss_pred EEEehhhHhhCCCcEEEEECccchHHHHHHHHH-HHHHc---CcEEEEeeecccCCCCCH--------------HHHHHH
Confidence 999888899999999999999875555553223 23333 788999999999987543 222333
Q ss_pred HHHHcC--CceEEEeccCCcCCHHHHHHHHHHHHhhhcc
Q psy4710 147 MAQKIN--AFAYLECSAKSKEGVREVFETATRAALQVKK 183 (192)
Q Consensus 147 ~~~~~~--~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~~~ 183 (192)
..+..+ .-..+.+||++|.||+++++.|++.+-.++.
T Consensus 152 Ie~~iGid~~dav~~SAKtG~gI~~iLe~Iv~~iP~P~g 190 (603)
T COG0481 152 IEDIIGIDASDAVLVSAKTGIGIEDVLEAIVEKIPPPKG 190 (603)
T ss_pred HHHHhCCCcchheeEecccCCCHHHHHHHHHhhCCCCCC
Confidence 444433 2356889999999999999999999988764
No 269
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=99.63 E-value=5.5e-15 Score=109.44 Aligned_cols=134 Identities=19% Similarity=0.227 Sum_probs=90.7
Q ss_pred CCeEEEEEEEeCCCCCcccccccccCCCCCEEEEEEECCCh----------hhhhchhhhhHHHHhh-hCCCCcEEEEee
Q psy4710 49 DSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSP----------DSLENIPEKWTPEVKH-FCPNVPIILVGN 117 (192)
Q Consensus 49 ~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~~~~~~~~~~~~~~~~-~~~~~p~ivv~n 117 (192)
..++..+.+||++|+...+..|.+++.+++++++|+|+++. ..+.+....+...+.. .+.++|+++++|
T Consensus 157 ~~~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~N 236 (317)
T cd00066 157 TIKNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLN 236 (317)
T ss_pred EecceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEcc
Confidence 34567899999999999999999999999999999999985 2333333334444432 336899999999
Q ss_pred cccccCCccchhhhhhccCCC----CCHHHHHHHHH-----Hc----CCceEEEeccCCcCCHHHHHHHHHHHHhhhc
Q psy4710 118 KKDLRNDPNTIKELNKMKQEP----VKPEEGRAMAQ-----KI----NAFAYLECSAKSKEGVREVFETATRAALQVK 182 (192)
Q Consensus 118 K~D~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~-----~~----~~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~~ 182 (192)
|.|+.........+...-+.. ...+.+..+.. .. ..+....++|.+..+++.+|+.+.+.+....
T Consensus 237 K~D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~~~~ 314 (317)
T cd00066 237 KKDLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIILQNN 314 (317)
T ss_pred ChHHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHHHHH
Confidence 999876443332232222221 22334433321 11 1234567999999999999999988887654
No 270
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.63 E-value=1.3e-15 Score=94.15 Aligned_cols=137 Identities=23% Similarity=0.264 Sum_probs=94.2
Q ss_pred eEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCC----CcccccccccCCCCCEEEE
Q psy4710 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQ----EDYDRLRPLSYPDTDVILM 82 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~----~~~~~~~~~~~~~~~~~i~ 82 (192)
|++++|+.|+|||||.+++.+........+. +++..+ -.+||||. ..+.+-.......+|.+++
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~lykKTQA--------ve~~d~----~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~ 70 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDTLYKKTQA--------VEFNDK----GDIDTPGEYFEHPRWYHALITTLQDADVIIY 70 (148)
T ss_pred eeEEecccccCchhHHHHhhcchhhhcccce--------eeccCc----cccCCchhhhhhhHHHHHHHHHhhccceeee
Confidence 7999999999999999999987654332211 223222 13599993 2222223345568999999
Q ss_pred EEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccC
Q psy4710 83 CFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAK 162 (192)
Q Consensus 83 v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 162 (192)
|-.++++++.-. ..+.... ..|+|-|+||.|+.++ ..-...+++..+-+.-++|.+|+.
T Consensus 71 v~~and~~s~f~--p~f~~~~-----~k~vIgvVTK~DLaed--------------~dI~~~~~~L~eaGa~~IF~~s~~ 129 (148)
T COG4917 71 VHAANDPESRFP--PGFLDIG-----VKKVIGVVTKADLAED--------------ADISLVKRWLREAGAEPIFETSAV 129 (148)
T ss_pred eecccCccccCC--ccccccc-----ccceEEEEecccccch--------------HhHHHHHHHHHHcCCcceEEEecc
Confidence 999998854222 1222222 4569999999999852 123344566666777799999999
Q ss_pred CcCCHHHHHHHHHH
Q psy4710 163 SKEGVREVFETATR 176 (192)
Q Consensus 163 ~~~gi~~~~~~i~~ 176 (192)
++.|++++++.+..
T Consensus 130 d~~gv~~l~~~L~~ 143 (148)
T COG4917 130 DNQGVEELVDYLAS 143 (148)
T ss_pred CcccHHHHHHHHHh
Confidence 99999999998754
No 271
>PRK12740 elongation factor G; Reviewed
Probab=99.63 E-value=1.2e-15 Score=123.54 Aligned_cols=111 Identities=19% Similarity=0.092 Sum_probs=73.7
Q ss_pred EcCCCCchhHHHHHHhhCCCCCcc----cC--c-----------eeeeeeEEEEECCeEEEEEEEeCCCCCccccccccc
Q psy4710 11 VGDGACGKTCLLIVFSKDQFPEVY----VP--T-----------VFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLS 73 (192)
Q Consensus 11 ~G~~~~GKSsli~~l~~~~~~~~~----~~--~-----------~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~ 73 (192)
+|++++|||||+++|+...-.... .. + +.+.......+...+..+.+|||||+.+|...+...
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~ 80 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERA 80 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence 699999999999999653211000 00 0 000111112333456789999999998887777778
Q ss_pred CCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCc
Q psy4710 74 YPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDP 125 (192)
Q Consensus 74 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 125 (192)
+..+|++++|+|+++....... .++..+... +.|+++++||+|+....
T Consensus 81 l~~aD~vllvvd~~~~~~~~~~--~~~~~~~~~--~~p~iiv~NK~D~~~~~ 128 (668)
T PRK12740 81 LRVLDGAVVVVCAVGGVEPQTE--TVWRQAEKY--GVPRIIFVNKMDRAGAD 128 (668)
T ss_pred HHHhCeEEEEEeCCCCcCHHHH--HHHHHHHHc--CCCEEEEEECCCCCCCC
Confidence 8899999999999886443332 233333333 78999999999987533
No 272
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.62 E-value=1.3e-14 Score=110.02 Aligned_cols=82 Identities=15% Similarity=0.161 Sum_probs=54.2
Q ss_pred eeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEE-E---------------------EC-CeEEEEEEEeCCC
Q psy4710 6 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADI-E---------------------VD-SKQVELALWDTAG 62 (192)
Q Consensus 6 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~-~---------------------~~-~~~~~~~l~D~~g 62 (192)
++|+++|.||+|||||+|+|.+........+..+......+ . .+ .....+++||+||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 68999999999999999999988765432232221111110 0 01 2346799999999
Q ss_pred CCc----cccccccc---CCCCCEEEEEEECC
Q psy4710 63 QED----YDRLRPLS---YPDTDVILMCFSID 87 (192)
Q Consensus 63 ~~~----~~~~~~~~---~~~~~~~i~v~d~~ 87 (192)
... .......+ ++.+|++++|+|+.
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 532 22222233 78999999999997
No 273
>KOG3905|consensus
Probab=99.62 E-value=4.9e-15 Score=106.25 Aligned_cols=175 Identities=15% Similarity=0.222 Sum_probs=118.1
Q ss_pred ceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCC----CCEE
Q psy4710 5 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPD----TDVI 80 (192)
Q Consensus 5 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~----~~~~ 80 (192)
.-+|+|+|..++|||||+.+|.+..-......-........-+.++...++.+|-.-|...+..+....+.. -.++
T Consensus 52 gk~VlvlGdn~sGKtsLi~klqg~e~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~aetlv 131 (473)
T KOG3905|consen 52 GKNVLVLGDNGSGKTSLISKLQGSETVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLAETLV 131 (473)
T ss_pred CCeEEEEccCCCchhHHHHHhhcccccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCccceEE
Confidence 357999999999999999999987632221111111112222344556788999999976666555554433 3578
Q ss_pred EEEEECCChhhhhchhhhhHHHHhhh-------------------------C----------------------------
Q psy4710 81 LMCFSIDSPDSLENIPEKWTPEVKHF-------------------------C---------------------------- 107 (192)
Q Consensus 81 i~v~d~~~~~~~~~~~~~~~~~~~~~-------------------------~---------------------------- 107 (192)
|++.|+++++.+-+..+.|...++.. .
T Consensus 132 iltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~~llP 211 (473)
T KOG3905|consen 132 ILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEHVLLP 211 (473)
T ss_pred EEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCccccccccc
Confidence 89999999966555545565433211 1
Q ss_pred ---------CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccCCcCCHHHHHHHHHHHH
Q psy4710 108 ---------PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAA 178 (192)
Q Consensus 108 ---------~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~~ 178 (192)
-++|++||+||+|.....+....+.+... .......+.||-.++. .++.+|+++..|++-+.++|.+..
T Consensus 212 L~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehf-dfiq~~lRkFCLr~Ga-aLiyTSvKE~KNidllyKYivhr~ 289 (473)
T KOG3905|consen 212 LGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHF-DFIQSHLRKFCLRYGA-ALIYTSVKETKNIDLLYKYIVHRS 289 (473)
T ss_pred cCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHH-HHHHHHHHHHHHHcCc-eeEEeecccccchHHHHHHHHHHh
Confidence 02599999999999664443333322211 1234667889999995 899999999999999999999988
Q ss_pred hhh
Q psy4710 179 LQV 181 (192)
Q Consensus 179 ~~~ 181 (192)
+..
T Consensus 290 yG~ 292 (473)
T KOG3905|consen 290 YGF 292 (473)
T ss_pred cCc
Confidence 764
No 274
>KOG0461|consensus
Probab=99.61 E-value=8.5e-15 Score=105.88 Aligned_cols=175 Identities=17% Similarity=0.138 Sum_probs=114.0
Q ss_pred ccceeEEEEcCCCCchhHHHHHHhhCC----CCCcccCceeeeeeEE------------EEECCeEEEEEEEeCCCCCcc
Q psy4710 3 AIRKKLVIVGDGACGKTCLLIVFSKDQ----FPEVYVPTVFENYVAD------------IEVDSKQVELALWDTAGQEDY 66 (192)
Q Consensus 3 ~~~~~i~v~G~~~~GKSsli~~l~~~~----~~~~~~~~~~~~~~~~------------~~~~~~~~~~~l~D~~g~~~~ 66 (192)
+..+++.++|+..||||||..++..-. |......+ +...... -...++...+.++|+|||...
T Consensus 5 p~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~-eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasL 83 (522)
T KOG0461|consen 5 PSNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQST-ERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASL 83 (522)
T ss_pred CceeeeeeEeeccCchHHHHHHHHhhccchhhccCCccc-ccceeEeecceeeecccccccCccccceeEEEeCCCcHHH
Confidence 357899999999999999999987532 22211111 1111110 012456678999999999776
Q ss_pred cccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHH
Q psy4710 67 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRA 146 (192)
Q Consensus 67 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (192)
-.......+-.|..++|+|+.....-+.....++..+. -...+||+||+|...++.+...++....+. ....+
T Consensus 84 IRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~----c~klvvvinkid~lpE~qr~ski~k~~kk~---~KtLe 156 (522)
T KOG0461|consen 84 IRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELL----CKKLVVVINKIDVLPENQRASKIEKSAKKV---RKTLE 156 (522)
T ss_pred HHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhh----ccceEEEEeccccccchhhhhHHHHHHHHH---HHHHH
Confidence 66665666678999999999887555555333333333 356799999999988654433332211110 00001
Q ss_pred HHHHcCCceEEEeccCCc----CCHHHHHHHHHHHHhhhcccc
Q psy4710 147 MAQKINAFAYLECSAKSK----EGVREVFETATRAALQVKKKK 185 (192)
Q Consensus 147 ~~~~~~~~~~~~~Sa~~~----~gi~~~~~~i~~~~~~~~~~~ 185 (192)
-...-++.|++++||++| +++.++.+.+..++..+++.-
T Consensus 157 ~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~P~Rd~ 199 (522)
T KOG0461|consen 157 STGFDGNSPIVEVSAADGYFKEEMIQELKEALESRIFEPKRDE 199 (522)
T ss_pred hcCcCCCCceeEEecCCCccchhHHHHHHHHHHHhhcCCCcCC
Confidence 111224479999999999 899999999999999887653
No 275
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.61 E-value=1.4e-14 Score=119.88 Aligned_cols=160 Identities=19% Similarity=0.224 Sum_probs=93.7
Q ss_pred CchhHHHHHHhhCCCCCcccCceeeee-eEEEEECC----------------eEEEEEEEeCCCCCcccccccccCCCCC
Q psy4710 16 CGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDS----------------KQVELALWDTAGQEDYDRLRPLSYPDTD 78 (192)
Q Consensus 16 ~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~----------------~~~~~~l~D~~g~~~~~~~~~~~~~~~~ 78 (192)
++||||+.++-+..........++... ...+..+. ..-.+.+|||||++.|.......+..+|
T Consensus 472 ~~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aD 551 (1049)
T PRK14845 472 VHNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLAD 551 (1049)
T ss_pred cccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCC
Confidence 359999999998877554322222111 11111111 0113899999999999887777788899
Q ss_pred EEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCcc-ch-----hh--------hhhc----------
Q psy4710 79 VILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPN-TI-----KE--------LNKM---------- 134 (192)
Q Consensus 79 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-~~-----~~--------~~~~---------- 134 (192)
++++|+|+++.- .......+..+... +.|+++++||+|+...-. .. .. ...+
T Consensus 552 ivlLVVDa~~Gi--~~qT~e~I~~lk~~--~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~v~~~ 627 (1049)
T PRK14845 552 LAVLVVDINEGF--KPQTIEAINILRQY--KTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYELIGK 627 (1049)
T ss_pred EEEEEEECcccC--CHhHHHHHHHHHHc--CCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHHHhhH
Confidence 999999998731 11111223333333 689999999999964211 00 00 0000
Q ss_pred -cCCCCCHHHHHHHHHHcCCceEEEeccCCcCCHHHHHHHHHHHHh
Q psy4710 135 -KQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAAL 179 (192)
Q Consensus 135 -~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~~~ 179 (192)
.......+......+..+.++++++||++|+|+++++..|.....
T Consensus 628 L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~~ 673 (1049)
T PRK14845 628 LYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLAQ 673 (1049)
T ss_pred HHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhhH
Confidence 000000000001112234578999999999999999998865443
No 276
>PRK13768 GTPase; Provisional
Probab=99.59 E-value=4.6e-15 Score=106.54 Aligned_cols=127 Identities=17% Similarity=0.148 Sum_probs=74.6
Q ss_pred EEEEEeCCCCCcc---cccccccC---CC--CCEEEEEEECCChhhhhchh-hhhHHHHhhhCCCCcEEEEeecccccCC
Q psy4710 54 ELALWDTAGQEDY---DRLRPLSY---PD--TDVILMCFSIDSPDSLENIP-EKWTPEVKHFCPNVPIILVGNKKDLRND 124 (192)
Q Consensus 54 ~~~l~D~~g~~~~---~~~~~~~~---~~--~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 124 (192)
.+.+||+||+.+. +..+..++ .. .+++++++|+.......... ..|+........+.|+++|+||+|+...
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~~~ 177 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLLSE 177 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhcCc
Confidence 6899999997553 22322222 22 79999999996543222221 1233322212237999999999999876
Q ss_pred ccchhhhhhccC----------CCC-CHHHHHHH---HHHcC-CceEEEeccCCcCCHHHHHHHHHHHHhh
Q psy4710 125 PNTIKELNKMKQ----------EPV-KPEEGRAM---AQKIN-AFAYLECSAKSKEGVREVFETATRAALQ 180 (192)
Q Consensus 125 ~~~~~~~~~~~~----------~~~-~~~~~~~~---~~~~~-~~~~~~~Sa~~~~gi~~~~~~i~~~~~~ 180 (192)
.........+.. ..- .....+++ .+..+ ..+++++|+++++|+++++++|.+.+..
T Consensus 178 ~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~~ 248 (253)
T PRK13768 178 EELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFCG 248 (253)
T ss_pred hhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcCC
Confidence 554332222111 000 00111112 22222 3478999999999999999999887753
No 277
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.58 E-value=4.4e-14 Score=105.73 Aligned_cols=164 Identities=18% Similarity=0.164 Sum_probs=113.0
Q ss_pred ceeEEEEcCCCCchhHHHHHHhhCC--CCCcc-------------cCceeeeeeEEEEECCeEEEEEEEeCCCCCccccc
Q psy4710 5 RKKLVIVGDGACGKTCLLIVFSKDQ--FPEVY-------------VPTVFENYVADIEVDSKQVELALWDTAGQEDYDRL 69 (192)
Q Consensus 5 ~~~i~v~G~~~~GKSsli~~l~~~~--~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~ 69 (192)
=-+|+|+.+...|||||+.+|+.+. |.+.. ...+.+...+...+.+.++.+.++|||||.+|.-.
T Consensus 5 iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGE 84 (603)
T COG1217 5 IRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGE 84 (603)
T ss_pred cceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccch
Confidence 3589999999999999999998754 22211 00111222233345667789999999999999999
Q ss_pred ccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHH-
Q psy4710 70 RPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMA- 148 (192)
Q Consensus 70 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 148 (192)
....+.-.|++++++|+.+.---+. .....-... .+.+.|||+||+|...+.+.. +-+ +...+.
T Consensus 85 VERvl~MVDgvlLlVDA~EGpMPQT--rFVlkKAl~--~gL~PIVVvNKiDrp~Arp~~----------Vvd-~vfDLf~ 149 (603)
T COG1217 85 VERVLSMVDGVLLLVDASEGPMPQT--RFVLKKALA--LGLKPIVVINKIDRPDARPDE----------VVD-EVFDLFV 149 (603)
T ss_pred hhhhhhhcceEEEEEEcccCCCCch--hhhHHHHHH--cCCCcEEEEeCCCCCCCCHHH----------HHH-HHHHHHH
Confidence 9999999999999999988522111 122222222 278889999999998765421 111 111221
Q ss_pred ------HHcCCceEEEeccCCc----------CCHHHHHHHHHHHHhhhccc
Q psy4710 149 ------QKINAFAYLECSAKSK----------EGVREVFETATRAALQVKKK 184 (192)
Q Consensus 149 ------~~~~~~~~~~~Sa~~~----------~gi~~~~~~i~~~~~~~~~~ 184 (192)
+++. +|++..|+..| .++..+|+.|.+++..+...
T Consensus 150 ~L~A~deQLd-FPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~~~ 200 (603)
T COG1217 150 ELGATDEQLD-FPIVYASARNGTASLDPEDEADDMAPLFETILDHVPAPKGD 200 (603)
T ss_pred HhCCChhhCC-CcEEEeeccCceeccCccccccchhHHHHHHHHhCCCCCCC
Confidence 2344 79999998877 47899999999999887643
No 278
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.57 E-value=1.7e-14 Score=102.99 Aligned_cols=123 Identities=11% Similarity=0.048 Sum_probs=74.6
Q ss_pred ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccc---c-------ccc
Q psy4710 3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDR---L-------RPL 72 (192)
Q Consensus 3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~---~-------~~~ 72 (192)
..+++|+++|.+|+|||||+|+|++...........++...........+..+.+|||||..+... . ...
T Consensus 29 ~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I~~ 108 (249)
T cd01853 29 DFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKILSSIKR 108 (249)
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCcCcchhhHHHHHHHHHHHHH
Confidence 357999999999999999999999976543321111111111222233456789999999654311 0 111
Q ss_pred cC--CCCCEEEEEEECCChhhhhchhhhhHHHHhhhCC---CCcEEEEeecccccCCcc
Q psy4710 73 SY--PDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP---NVPIILVGNKKDLRNDPN 126 (192)
Q Consensus 73 ~~--~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~---~~p~ivv~nK~D~~~~~~ 126 (192)
++ ...+++++|..++.. .+.......++.+...+. -.++++|.||+|...+..
T Consensus 109 ~l~~~~idvIL~V~rlD~~-r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p~~ 166 (249)
T cd01853 109 YLKKKTPDVVLYVDRLDMY-RRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSPPDG 166 (249)
T ss_pred HHhccCCCEEEEEEcCCCC-CCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCCCCC
Confidence 22 246888888766542 233333345555554332 257999999999976544
No 279
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=99.57 E-value=3.9e-14 Score=105.70 Aligned_cols=133 Identities=17% Similarity=0.216 Sum_probs=89.9
Q ss_pred CeEEEEEEEeCCCCCcccccccccCCCCCEEEEEEECCChh----------hhhchhhhhHHHHhh-hCCCCcEEEEeec
Q psy4710 50 SKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPD----------SLENIPEKWTPEVKH-FCPNVPIILVGNK 118 (192)
Q Consensus 50 ~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~----------~~~~~~~~~~~~~~~-~~~~~p~ivv~nK 118 (192)
.++..+.+||++|+...+..|.+++.+++++|+|+|+++.+ .+......|...+.. .+.+.|++|++||
T Consensus 181 ~~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK 260 (342)
T smart00275 181 VKKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNK 260 (342)
T ss_pred ECCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEec
Confidence 34567899999999999999999999999999999999742 344443344444432 3468999999999
Q ss_pred ccccCCccchhhhhhccCCC---CCHHHHHHHH-----HHcC-----CceEEEeccCCcCCHHHHHHHHHHHHhhhc
Q psy4710 119 KDLRNDPNTIKELNKMKQEP---VKPEEGRAMA-----QKIN-----AFAYLECSAKSKEGVREVFETATRAALQVK 182 (192)
Q Consensus 119 ~D~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-----~~~~-----~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~~ 182 (192)
.|+....-....+...-+.. .....+..+. .... .+..+.++|.+..++..+|+.+...+....
T Consensus 261 ~D~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I~~~~ 337 (342)
T smart00275 261 IDLFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDIILQRN 337 (342)
T ss_pred HHhHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHHHHHH
Confidence 99976443322222221111 1233333322 1111 234567899999999999999888887664
No 280
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.55 E-value=7.9e-15 Score=119.26 Aligned_cols=115 Identities=20% Similarity=0.093 Sum_probs=78.4
Q ss_pred ceeEEEEcCCCCchhHHHHHHhhCC---------------CCCc---ccCceeeee-eEEEEECCeEEEEEEEeCCCCCc
Q psy4710 5 RKKLVIVGDGACGKTCLLIVFSKDQ---------------FPEV---YVPTVFENY-VADIEVDSKQVELALWDTAGQED 65 (192)
Q Consensus 5 ~~~i~v~G~~~~GKSsli~~l~~~~---------------~~~~---~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~ 65 (192)
-.+|+++|+.++|||||+++|+... +... +..+..... .....++..++.+.+|||||+.+
T Consensus 19 irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~~ 98 (720)
T TIGR00490 19 IRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGHVD 98 (720)
T ss_pred ccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCccc
Confidence 4699999999999999999997531 1110 000111111 11223566778999999999999
Q ss_pred ccccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccC
Q psy4710 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN 123 (192)
Q Consensus 66 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 123 (192)
|.......++.+|++|+|+|+.+.-..+. ...+..... .+.|.++++||+|...
T Consensus 99 f~~~~~~al~~aD~~llVvda~~g~~~~t--~~~~~~~~~--~~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 99 FGGDVTRAMRAVDGAIVVVCAVEGVMPQT--ETVLRQALK--ENVKPVLFINKVDRLI 152 (720)
T ss_pred cHHHHHHHHHhcCEEEEEEecCCCCCccH--HHHHHHHHH--cCCCEEEEEEChhccc
Confidence 88777788899999999999987522221 222333222 2688999999999865
No 281
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.55 E-value=4.3e-14 Score=102.56 Aligned_cols=119 Identities=12% Similarity=0.133 Sum_probs=72.8
Q ss_pred ccceeEEEEcCCCCchhHHHHHHhhCCCCCcc--cCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccc-------ccc
Q psy4710 3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVY--VPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLR-------PLS 73 (192)
Q Consensus 3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~-------~~~ 73 (192)
...++|+++|.+|+||||++|++++....... .+.+....... ....+..+.++||||..+..... ..+
T Consensus 36 ~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~--~~~~G~~l~VIDTPGL~d~~~~~e~~~~~ik~~ 113 (313)
T TIGR00991 36 VSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVS--RTRAGFTLNIIDTPGLIEGGYINDQAVNIIKRF 113 (313)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEE--EEECCeEEEEEECCCCCchHHHHHHHHHHHHHH
Confidence 35789999999999999999999987653321 11111111111 12245789999999965432111 111
Q ss_pred --CCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCC---CCcEEEEeecccccCC
Q psy4710 74 --YPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP---NVPIILVGNKKDLRND 124 (192)
Q Consensus 74 --~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~---~~p~ivv~nK~D~~~~ 124 (192)
-...|++++|..++.. .+.......+..+...+. -.++||++|+.|..++
T Consensus 114 l~~~g~DvVLyV~rLD~~-R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~p 168 (313)
T TIGR00991 114 LLGKTIDVLLYVDRLDAY-RVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPP 168 (313)
T ss_pred hhcCCCCEEEEEeccCcc-cCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCCC
Confidence 1258999999665432 233333344444444332 3679999999997653
No 282
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.53 E-value=7.8e-14 Score=97.87 Aligned_cols=168 Identities=15% Similarity=0.139 Sum_probs=93.7
Q ss_pred eeEEEEcCCCCchhHHHHHHhhCCCCCccc-CceeeeeeEEEEECCeEEEEEEEeCCCCCccccc-------c----ccc
Q psy4710 6 KKLVIVGDGACGKTCLLIVFSKDQFPEVYV-PTVFENYVADIEVDSKQVELALWDTAGQEDYDRL-------R----PLS 73 (192)
Q Consensus 6 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~-------~----~~~ 73 (192)
++|+++|..||||||++|.+++........ ....+...........+..+.++||||..+.... . ...
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~ 80 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLC 80 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTEEHHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhc
Confidence 589999999999999999999987644321 1111222211122233467899999994322110 0 113
Q ss_pred CCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCC---CCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHH
Q psy4710 74 YPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP---NVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQK 150 (192)
Q Consensus 74 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~---~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (192)
..+.+++|+|+.... +.......+..+...+. -..++||.|..|...+....+.+.. ......+++.+.
T Consensus 81 ~~g~ha~llVi~~~r---~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~~~~~l~~-----~~~~~l~~li~~ 152 (212)
T PF04548_consen 81 SPGPHAFLLVIPLGR---FTEEDREVLELLQEIFGEEIWKHTIVVFTHADELEDDSLEDYLKK-----ESNEALQELIEK 152 (212)
T ss_dssp TT-ESEEEEEEETTB----SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGTTTTHHHHHHH-----HHHHHHHHHHHH
T ss_pred cCCCeEEEEEEecCc---chHHHHHHHHHHHHHccHHHHhHhhHHhhhccccccccHHHHHhc-----cCchhHhHHhhh
Confidence 457899999999883 33322333333333222 2578999999998775442111110 002234566666
Q ss_pred cCCceEEEeccC------CcCCHHHHHHHHHHHHhhhc
Q psy4710 151 INAFAYLECSAK------SKEGVREVFETATRAALQVK 182 (192)
Q Consensus 151 ~~~~~~~~~Sa~------~~~gi~~~~~~i~~~~~~~~ 182 (192)
.+. .|+..+.. ....+.+|++.|-+.+.+..
T Consensus 153 c~~-R~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n~ 189 (212)
T PF04548_consen 153 CGG-RYHVFNNKTKDKEKDESQVSELLEKIEEMVQENG 189 (212)
T ss_dssp TTT-CEEECCTTHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cCC-EEEEEeccccchhhhHHHHHHHHHHHHHHHHHcC
Confidence 664 45555554 33567888888777766654
No 283
>KOG1532|consensus
Probab=99.52 E-value=3.4e-14 Score=99.77 Aligned_cols=132 Identities=13% Similarity=0.165 Sum_probs=77.2
Q ss_pred eEEEEEEEeCCCCCcc------cccccccCC--CCCEEEEEEECCChhhhhchhhhhHHHHhhh-CCCCcEEEEeecccc
Q psy4710 51 KQVELALWDTAGQEDY------DRLRPLSYP--DTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDL 121 (192)
Q Consensus 51 ~~~~~~l~D~~g~~~~------~~~~~~~~~--~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~ 121 (192)
......++|||||-.- .......+. ...++++++|.....+-.......+....-. .-..|.|++.||+|+
T Consensus 114 ~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSilyktklp~ivvfNK~Dv 193 (366)
T KOG1532|consen 114 EEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSILYKTKLPFIVVFNKTDV 193 (366)
T ss_pred cccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHHHHhccCCeEEEEecccc
Confidence 3356899999997541 111111222 2455667777644322221112222222211 127999999999999
Q ss_pred cCCccchhhhhhccCCCC-------------CHHHHHHHHHHcCCceEEEeccCCcCCHHHHHHHHHHHHhhhc
Q psy4710 122 RNDPNTIKELNKMKQEPV-------------KPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVK 182 (192)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~~ 182 (192)
.......+.+.++..... .......+.+.+..+..+.+|+.+|.|.+++|..+.+.+-+..
T Consensus 194 ~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vdEy~ 267 (366)
T KOG1532|consen 194 SDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVDEYE 267 (366)
T ss_pred cccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHHHHH
Confidence 887766655433222111 1112223344455567899999999999999999988877764
No 284
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=99.52 E-value=1.8e-13 Score=105.20 Aligned_cols=173 Identities=16% Similarity=0.280 Sum_probs=112.5
Q ss_pred ceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeE-EE--EECCeEEEEEEEeCCCCCcccccccccCCC----C
Q psy4710 5 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DI--EVDSKQVELALWDTAGQEDYDRLRPLSYPD----T 77 (192)
Q Consensus 5 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~----~ 77 (192)
+-.|+|+|..++|||||+.+|.+..- +.++.+-.|.. .+ ........+.+|-+.|...+..+....+.. -
T Consensus 25 ~k~vlvlG~~~~GKttli~~L~~~e~---~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~~ 101 (472)
T PF05783_consen 25 EKSVLVLGDKGSGKTTLIARLQGIED---PKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLPN 101 (472)
T ss_pred CceEEEEeCCCCchHHHHHHhhccCC---CCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccccc
Confidence 46899999999999999999876432 22232222211 11 112234578999999877777666655543 3
Q ss_pred CEEEEEEECCChhhhhchhhhhHHHHh-------------------------hhC-------------------------
Q psy4710 78 DVILMCFSIDSPDSLENIPEKWTPEVK-------------------------HFC------------------------- 107 (192)
Q Consensus 78 ~~~i~v~d~~~~~~~~~~~~~~~~~~~-------------------------~~~------------------------- 107 (192)
-.+|+|+|.+.|+.+-.-.+.|+..++ .+.
T Consensus 102 t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~~~ 181 (472)
T PF05783_consen 102 TLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDDES 181 (472)
T ss_pred eEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCccccccccccccccc
Confidence 568889999999765433333322111 000
Q ss_pred -------------CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccCCcCCHHHHHHHH
Q psy4710 108 -------------PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETA 174 (192)
Q Consensus 108 -------------~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i 174 (192)
-++|++||++|+|.....+....+.+. ....-....+.+|-.+++ .+|.+|++...+++.++.+|
T Consensus 182 ~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e-~~DfIqq~LR~~cL~yGA-sL~yts~~~~~n~~~L~~yi 259 (472)
T PF05783_consen 182 VLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEE-HFDFIQQYLRTFCLKYGA-SLIYTSVKEEKNLDLLYKYI 259 (472)
T ss_pred ccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchh-hHHHHHHHHHHHHHhcCC-eEEEeeccccccHHHHHHHH
Confidence 036999999999987633322211111 011234567788999995 88999999999999999999
Q ss_pred HHHHhhhc
Q psy4710 175 TRAALQVK 182 (192)
Q Consensus 175 ~~~~~~~~ 182 (192)
.+.++...
T Consensus 260 ~h~l~~~~ 267 (472)
T PF05783_consen 260 LHRLYGFP 267 (472)
T ss_pred HHHhccCC
Confidence 99887754
No 285
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.52 E-value=1.9e-13 Score=100.98 Aligned_cols=108 Identities=20% Similarity=0.197 Sum_probs=68.1
Q ss_pred eEEEEEEEeCCCCCcccccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhh
Q psy4710 51 KQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKE 130 (192)
Q Consensus 51 ~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~ 130 (192)
.++.+.++||+|...-... ....+|.++++.+...++.++......+ ...-++|+||+|+.........
T Consensus 147 ~g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k~gi~--------E~aDIiVVNKaDl~~~~~a~~~ 215 (332)
T PRK09435 147 AGYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIKKGIM--------ELADLIVINKADGDNKTAARRA 215 (332)
T ss_pred cCCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHHhhhh--------hhhheEEeehhcccchhHHHHH
Confidence 3467899999996532221 4567999999987666665655432111 2234899999998764321111
Q ss_pred hhhccCCCCCHHHHHHHHHH------cCCceEEEeccCCcCCHHHHHHHHHHHHh
Q psy4710 131 LNKMKQEPVKPEEGRAMAQK------INAFAYLECSAKSKEGVREVFETATRAAL 179 (192)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~~~gi~~~~~~i~~~~~ 179 (192)
. .+....... ....|++.+||+++.|++++++.|.+++.
T Consensus 216 ~----------~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~ 260 (332)
T PRK09435 216 A----------AEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRA 260 (332)
T ss_pred H----------HHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 1 111111111 01148999999999999999999998764
No 286
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=99.50 E-value=7.1e-13 Score=91.90 Aligned_cols=104 Identities=21% Similarity=0.258 Sum_probs=63.1
Q ss_pred EEEEEEeCCCCCcccccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhh
Q psy4710 53 VELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELN 132 (192)
Q Consensus 53 ~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~ 132 (192)
....++++.|..-...... .-++.++.|+|+.+.++... .....+ ...-++++||+|+.+...
T Consensus 92 ~D~iiIEt~G~~l~~~~~~---~l~~~~i~vvD~~~~~~~~~---~~~~qi-----~~ad~~~~~k~d~~~~~~------ 154 (199)
T TIGR00101 92 LEMVFIESGGDNLSATFSP---ELADLTIFVIDVAAGDKIPR---KGGPGI-----TRSDLLVINKIDLAPMVG------ 154 (199)
T ss_pred CCEEEEECCCCCcccccch---hhhCcEEEEEEcchhhhhhh---hhHhHh-----hhccEEEEEhhhcccccc------
Confidence 4566778877321111111 12688999999998655321 111111 233489999999975211
Q ss_pred hccCCCCCHHHHHHHHHH-cCCceEEEeccCCcCCHHHHHHHHHHHHh
Q psy4710 133 KMKQEPVKPEEGRAMAQK-INAFAYLECSAKSKEGVREVFETATRAAL 179 (192)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~gi~~~~~~i~~~~~ 179 (192)
...+...+..+. .+..+++++||++|+|++++++++.++..
T Consensus 155 ------~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~~ 196 (199)
T TIGR00101 155 ------ADLGVMERDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYAL 196 (199)
T ss_pred ------ccHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 112222222222 34478999999999999999999987653
No 287
>KOG0082|consensus
Probab=99.50 E-value=1.3e-13 Score=101.26 Aligned_cols=137 Identities=22% Similarity=0.242 Sum_probs=92.0
Q ss_pred EECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEEEECCChhhhhchhhhh------HHHHh-----hhCCCCcEEEE
Q psy4710 47 EVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKW------TPEVK-----HFCPNVPIILV 115 (192)
Q Consensus 47 ~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~------~~~~~-----~~~~~~p~ivv 115 (192)
.+...+..+.++|+|||..-+..|.+++.+++++|+|+++++.+....-.+.- +.++. +++.+.++|++
T Consensus 189 ~F~~k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsiiLF 268 (354)
T KOG0082|consen 189 EFTIKGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSIILF 268 (354)
T ss_pred EEEeCCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEEEE
Confidence 44455678999999999999999999999999999999999875433222111 11121 34568999999
Q ss_pred eecccccCCccchhhh----hhccCCCCCHHHHHHHH-----HHc----CCceEEEeccCCcCCHHHHHHHHHHHHhhhc
Q psy4710 116 GNKKDLRNDPNTIKEL----NKMKQEPVKPEEGRAMA-----QKI----NAFAYLECSAKSKEGVREVFETATRAALQVK 182 (192)
Q Consensus 116 ~nK~D~~~~~~~~~~~----~~~~~~~~~~~~~~~~~-----~~~----~~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~~ 182 (192)
+||.|+....-..... .+.... ...+++..+. +-+ ..+.+..+.|.+..+|+.+|+.+.+.+....
T Consensus 269 LNK~DLFeEKi~~~~~~~~Fpdy~G~-~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d~Ii~~n 347 (354)
T KOG0082|consen 269 LNKKDLFEEKIKKVPLTDCFPDYKGV-NTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTDTIIQNN 347 (354)
T ss_pred eecHHHHHHHhccCchhhhCcCCCCC-CChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHHHHHHHH
Confidence 9999998754432222 112222 2333443332 111 1134456899999999999999999888765
Q ss_pred cc
Q psy4710 183 KK 184 (192)
Q Consensus 183 ~~ 184 (192)
-+
T Consensus 348 lk 349 (354)
T KOG0082|consen 348 LK 349 (354)
T ss_pred HH
Confidence 44
No 288
>KOG1144|consensus
Probab=99.49 E-value=2e-13 Score=107.17 Aligned_cols=176 Identities=19% Similarity=0.157 Sum_probs=109.8
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEE-------------E----CCeEEEEEEEeCCCCCcc
Q psy4710 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIE-------------V----DSKQVELALWDTAGQEDY 66 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~-------------~----~~~~~~~~l~D~~g~~~~ 66 (192)
+..=|+|+|+..+|||-|+..+-+..+......+++..+...+. - ...---+.++||||++.|
T Consensus 474 RSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsF 553 (1064)
T KOG1144|consen 474 RSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESF 553 (1064)
T ss_pred CCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhh
Confidence 34558999999999999999998765544322222211111100 0 011124789999999999
Q ss_pred cccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccC------CccchhhhhhccCCCCC
Q psy4710 67 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN------DPNTIKELNKMKQEPVK 140 (192)
Q Consensus 67 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~------~~~~~~~~~~~~~~~~~ 140 (192)
..+.......||++|+|+|+..+-.-+.+ .-+.+++.. +.|+||.+||+|..- +.+....+.......+.
T Consensus 554 tnlRsrgsslC~~aIlvvdImhGlepqti--ESi~lLR~r--ktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~v~~ 629 (1064)
T KOG1144|consen 554 TNLRSRGSSLCDLAILVVDIMHGLEPQTI--ESINLLRMR--KTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKDVQN 629 (1064)
T ss_pred hhhhhccccccceEEEEeehhccCCcchh--HHHHHHHhc--CCCeEEeehhhhhhcccccCCCchHHHHHHHhhHHHHH
Confidence 99999999999999999999876333332 233444443 899999999999852 11112222111111100
Q ss_pred ------HHHHHHHHHH-------cC------CceEEEeccCCcCCHHHHHHHHHHHHhhhcc
Q psy4710 141 ------PEEGRAMAQK-------IN------AFAYLECSAKSKEGVREVFETATRAALQVKK 183 (192)
Q Consensus 141 ------~~~~~~~~~~-------~~------~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~~~ 183 (192)
.....+|+.+ +. -+.++++||..|+||-.|+.+|+........
T Consensus 630 EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~m~ 691 (1064)
T KOG1144|consen 630 EFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKTMV 691 (1064)
T ss_pred HHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHHHH
Confidence 0111122221 11 1467899999999999999999888776643
No 289
>PTZ00416 elongation factor 2; Provisional
Probab=99.49 E-value=7.2e-14 Score=115.18 Aligned_cols=114 Identities=13% Similarity=0.047 Sum_probs=77.4
Q ss_pred ceeEEEEcCCCCchhHHHHHHhhCCCCCcccCce---------------eeee--eEEEEEC--------CeEEEEEEEe
Q psy4710 5 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV---------------FENY--VADIEVD--------SKQVELALWD 59 (192)
Q Consensus 5 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~---------------~~~~--~~~~~~~--------~~~~~~~l~D 59 (192)
-.+|+++|+.++|||||+++|+...-........ .+.. ...+.+. ..+..+.++|
T Consensus 19 irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~liD 98 (836)
T PTZ00416 19 IRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINLID 98 (836)
T ss_pred cCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEEEc
Confidence 3499999999999999999998632111000000 0000 0111222 2256799999
Q ss_pred CCCCCcccccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeeccccc
Q psy4710 60 TAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLR 122 (192)
Q Consensus 60 ~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 122 (192)
|||+.+|.......++.+|++|+|+|+.++-..+ .+..+..+... +.|+++++||+|+.
T Consensus 99 tPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~--t~~~~~~~~~~--~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 99 SPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQ--TETVLRQALQE--RIRPVLFINKVDRA 157 (836)
T ss_pred CCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCcc--HHHHHHHHHHc--CCCEEEEEEChhhh
Confidence 9999998888888889999999999998863222 23444444433 68999999999997
No 290
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.48 E-value=2e-13 Score=111.41 Aligned_cols=115 Identities=17% Similarity=0.027 Sum_probs=76.2
Q ss_pred ceeEEEEcCCCCchhHHHHHHhhCCCCCccc-C---c-----------eeeee--eEEE--EECCeEEEEEEEeCCCCCc
Q psy4710 5 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYV-P---T-----------VFENY--VADI--EVDSKQVELALWDTAGQED 65 (192)
Q Consensus 5 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~-~---~-----------~~~~~--~~~~--~~~~~~~~~~l~D~~g~~~ 65 (192)
-.+|+++|+.++|||||+.+|+...-..... . . ..+.. ...+ ....++..+.++||||+.+
T Consensus 20 iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~d 99 (731)
T PRK07560 20 IRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHVD 99 (731)
T ss_pred ccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCccC
Confidence 3479999999999999999997632111000 0 0 00000 0011 2244567899999999999
Q ss_pred ccccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccC
Q psy4710 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN 123 (192)
Q Consensus 66 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 123 (192)
|.......++.+|++|+|+|+...-..+ .+..+...... +.|.|+++||+|...
T Consensus 100 f~~~~~~~l~~~D~avlVvda~~g~~~~--t~~~~~~~~~~--~~~~iv~iNK~D~~~ 153 (731)
T PRK07560 100 FGGDVTRAMRAVDGAIVVVDAVEGVMPQ--TETVLRQALRE--RVKPVLFINKVDRLI 153 (731)
T ss_pred hHHHHHHHHHhcCEEEEEEECCCCCCcc--HHHHHHHHHHc--CCCeEEEEECchhhc
Confidence 8877778888999999999988753222 22333333322 678899999999874
No 291
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.48 E-value=8.2e-14 Score=115.02 Aligned_cols=114 Identities=14% Similarity=0.047 Sum_probs=77.9
Q ss_pred ceeEEEEcCCCCchhHHHHHHhhCCCCCcccCc---------------eeeee--eEEEEE--------------CCeEE
Q psy4710 5 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPT---------------VFENY--VADIEV--------------DSKQV 53 (192)
Q Consensus 5 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~---------------~~~~~--~~~~~~--------------~~~~~ 53 (192)
-.+|+|+|+.++|||||+++|+...-....... ..+.. ...+.+ ...+.
T Consensus 19 Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
T PLN00116 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGNEY 98 (843)
T ss_pred ccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCCCce
Confidence 458999999999999999999864321000000 00000 011112 12367
Q ss_pred EEEEEeCCCCCcccccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeeccccc
Q psy4710 54 ELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLR 122 (192)
Q Consensus 54 ~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 122 (192)
.+.++|||||.+|.......++.+|++|+|+|+.++-..+. +..+..+... +.|+++++||+|..
T Consensus 99 ~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t--~~~~~~~~~~--~~p~i~~iNK~D~~ 163 (843)
T PLN00116 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT--ETVLRQALGE--RIRPVLTVNKMDRC 163 (843)
T ss_pred EEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccH--HHHHHHHHHC--CCCEEEEEECCccc
Confidence 78999999999998888888899999999999997643332 2333333333 79999999999997
No 292
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.48 E-value=8.1e-15 Score=104.05 Aligned_cols=124 Identities=15% Similarity=0.165 Sum_probs=59.9
Q ss_pred EEEEEeCCCCCccccccccc------C--CCCCEEEEEEECCChhhhhchhhhhHHHHhh-hCCCCcEEEEeecccccCC
Q psy4710 54 ELALWDTAGQEDYDRLRPLS------Y--PDTDVILMCFSIDSPDSLENIPEKWTPEVKH-FCPNVPIILVGNKKDLRND 124 (192)
Q Consensus 54 ~~~l~D~~g~~~~~~~~~~~------~--~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~ 124 (192)
.+.++|||||.++...+... + ...-++++++|..-..+.......++..+.. ..-+.|.|.|+||+|+...
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~~~ 171 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLLSK 171 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS-H
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCcccc
Confidence 68999999987754433222 1 3456778888876433222222222222111 1127999999999999873
Q ss_pred cc--chhhhhh------ccCCCCCHHHHHHHHH---HcCCc-eEEEeccCCcCCHHHHHHHHHHHH
Q psy4710 125 PN--TIKELNK------MKQEPVKPEEGRAMAQ---KINAF-AYLECSAKSKEGVREVFETATRAA 178 (192)
Q Consensus 125 ~~--~~~~~~~------~~~~~~~~~~~~~~~~---~~~~~-~~~~~Sa~~~~gi~~~~~~i~~~~ 178 (192)
.. ..+...+ ..... ......++++ .++.. .++++|+.+++|+++++..+.+++
T Consensus 172 ~~~~~l~~~~d~~~l~~~~~~~-~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~ 236 (238)
T PF03029_consen 172 YLEFILEWFEDPDSLEDLLESD-YKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN 236 (238)
T ss_dssp HHHHHHHHHHSHHHHHHHHHT--HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred hhHHHHHHhcChHHHHHHHHHH-HHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence 31 1111100 00000 1111223333 33444 789999999999999999988765
No 293
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.47 E-value=3.1e-13 Score=95.60 Aligned_cols=142 Identities=13% Similarity=0.068 Sum_probs=83.5
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEE
Q psy4710 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMC 83 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v 83 (192)
.+..|+++|++|+|||||++.+.+...........+. . .+ ....+..+.++||||.. . ......+.+|+++++
T Consensus 38 ~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-i--~i-~~~~~~~i~~vDtPg~~--~-~~l~~ak~aDvVllv 110 (225)
T cd01882 38 PPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-I--TV-VTGKKRRLTFIECPNDI--N-AMIDIAKVADLVLLL 110 (225)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc-E--EE-EecCCceEEEEeCCchH--H-HHHHHHHhcCEEEEE
Confidence 3567999999999999999999875321111111111 1 11 12245678999999853 1 122345789999999
Q ss_pred EECCChhhhhchhhhhHHHHhhhCCCCcEE-EEeecccccCCccchhhhhhccCCCCCHHHHHH-HH-HHcCCceEEEec
Q psy4710 84 FSIDSPDSLENIPEKWTPEVKHFCPNVPII-LVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRA-MA-QKINAFAYLECS 160 (192)
Q Consensus 84 ~d~~~~~~~~~~~~~~~~~~~~~~~~~p~i-vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~S 160 (192)
+|++..... ....++..+... +.|.+ +|+||+|+..+...... . ....+. +. ......+++.+|
T Consensus 111 iDa~~~~~~--~~~~i~~~l~~~--g~p~vi~VvnK~D~~~~~~~~~~--------~-~~~l~~~~~~~~~~~~ki~~iS 177 (225)
T cd01882 111 IDASFGFEM--ETFEFLNILQVH--GFPRVMGVLTHLDLFKKNKTLRK--------T-KKRLKHRFWTEVYQGAKLFYLS 177 (225)
T ss_pred EecCcCCCH--HHHHHHHHHHHc--CCCeEEEEEeccccCCcHHHHHH--------H-HHHHHHHHHHhhCCCCcEEEEe
Confidence 999764322 223455555443 67854 59999998753211100 0 111211 22 223346899999
Q ss_pred cCCcC
Q psy4710 161 AKSKE 165 (192)
Q Consensus 161 a~~~~ 165 (192)
|+++-
T Consensus 178 a~~~~ 182 (225)
T cd01882 178 GIVHG 182 (225)
T ss_pred eccCC
Confidence 99874
No 294
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.46 E-value=2.2e-13 Score=97.73 Aligned_cols=168 Identities=17% Similarity=0.130 Sum_probs=107.7
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCCCCcc---cCce----------------e---eeeeE--EEEEC----CeEEEE
Q psy4710 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVY---VPTV----------------F---ENYVA--DIEVD----SKQVEL 55 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~---~~~~----------------~---~~~~~--~~~~~----~~~~~~ 55 (192)
-+++|.++|+..-|||||+.+|.+--....+ .... + ..+.. .+... .-...+
T Consensus 9 p~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~V 88 (415)
T COG5257 9 PEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRRV 88 (415)
T ss_pred cceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEEE
Confidence 3789999999999999999999872211000 0000 0 00000 00000 112468
Q ss_pred EEEeCCCCCcccccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhcc
Q psy4710 56 ALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMK 135 (192)
Q Consensus 56 ~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~ 135 (192)
.++|.|||+-.-....+-..-+|++++|++++.+..-....+.+..+ . ...-..+||+-||+|+.......+
T Consensus 89 SfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~Al-e-Iigik~iiIvQNKIDlV~~E~AlE------ 160 (415)
T COG5257 89 SFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMAL-E-IIGIKNIIIVQNKIDLVSRERALE------ 160 (415)
T ss_pred EEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHH-h-hhccceEEEEecccceecHHHHHH------
Confidence 99999999877666555556789999999998864433333333221 1 112478899999999987322221
Q ss_pred CCCCCHHHHHHHHHHc--CCceEEEeccCCcCCHHHHHHHHHHHHhhhcc
Q psy4710 136 QEPVKPEEGRAMAQKI--NAFAYLECSAKSKEGVREVFETATRAALQVKK 183 (192)
Q Consensus 136 ~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~~~ 183 (192)
.+++..+|.+.- ...|++++||..+.||+.+++.|.+.+-.+.+
T Consensus 161 ----~y~qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP~r 206 (415)
T COG5257 161 ----NYEQIKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPTPER 206 (415)
T ss_pred ----HHHHHHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCCCcc
Confidence 223344444322 23699999999999999999999999988765
No 295
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.46 E-value=4.4e-13 Score=97.29 Aligned_cols=154 Identities=16% Similarity=0.096 Sum_probs=98.3
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCCCC----------ccc--Cce-------------------e-eeeeEEEEECCe
Q psy4710 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPE----------VYV--PTV-------------------F-ENYVADIEVDSK 51 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~----------~~~--~~~-------------------~-~~~~~~~~~~~~ 51 (192)
..+|.+-+|...-|||||+-+|+...-.. .+. .+. + +....-..+.-.
T Consensus 5 ~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT~ 84 (431)
T COG2895 5 SLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFSTE 84 (431)
T ss_pred cceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecccc
Confidence 46899999999999999999987643210 000 000 0 000111123345
Q ss_pred EEEEEEEeCCCCCcccccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhh
Q psy4710 52 QVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKEL 131 (192)
Q Consensus 52 ~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~ 131 (192)
..+|.+-|||||+.|......-...||++|+++|+...---+.-.+.++ .....-..+++.+||+||.+..+..-
T Consensus 85 KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs~I---~sLLGIrhvvvAVNKmDLvdy~e~~F-- 159 (431)
T COG2895 85 KRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGVLEQTRRHSFI---ASLLGIRHVVVAVNKMDLVDYSEEVF-- 159 (431)
T ss_pred cceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhhHHHhHHHHHH---HHHhCCcEEEEEEeeecccccCHHHH--
Confidence 6689999999999998877777788999999999965421111111222 22222478899999999988533110
Q ss_pred hhccCCCCCHHHHHHHHHHcCC--ceEEEeccCCcCCHH
Q psy4710 132 NKMKQEPVKPEEGRAMAQKINA--FAYLECSAKSKEGVR 168 (192)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~ 168 (192)
..-..+...|+.+++. ..++++||+.|+|+-
T Consensus 160 ------~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~ 192 (431)
T COG2895 160 ------EAIVADYLAFAAQLGLKDVRFIPISALLGDNVV 192 (431)
T ss_pred ------HHHHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence 0112334457777764 468999999999874
No 296
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.46 E-value=3.2e-13 Score=100.50 Aligned_cols=117 Identities=20% Similarity=0.191 Sum_probs=85.7
Q ss_pred cceeEEEEcCCCCchhHHHHHHhh--CCCCCc--------c-----------cCceeeeeeEEEEECCeEEEEEEEeCCC
Q psy4710 4 IRKKLVIVGDGACGKTCLLIVFSK--DQFPEV--------Y-----------VPTVFENYVADIEVDSKQVELALWDTAG 62 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~--~~~~~~--------~-----------~~~~~~~~~~~~~~~~~~~~~~l~D~~g 62 (192)
++-..+|+-+|.+|||||-.+|+- +..... . ...+....+..+.+++.+..+.+.||||
T Consensus 11 rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPG 90 (528)
T COG4108 11 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPG 90 (528)
T ss_pred hhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCC
Confidence 456789999999999999999763 111100 0 0011122233457788889999999999
Q ss_pred CCcccccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCC
Q psy4710 63 QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRND 124 (192)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 124 (192)
|++|..-+-..+..+|.+++|+|+..+ ++.....+....+-. ++|++-++||.|...-
T Consensus 91 HeDFSEDTYRtLtAvDsAvMVIDaAKG--iE~qT~KLfeVcrlR--~iPI~TFiNKlDR~~r 148 (528)
T COG4108 91 HEDFSEDTYRTLTAVDSAVMVIDAAKG--IEPQTLKLFEVCRLR--DIPIFTFINKLDREGR 148 (528)
T ss_pred ccccchhHHHHHHhhheeeEEEecccC--ccHHHHHHHHHHhhc--CCceEEEeeccccccC
Confidence 999999888888999999999999876 443333566665544 8999999999998653
No 297
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=99.42 E-value=3.4e-12 Score=89.34 Aligned_cols=150 Identities=17% Similarity=0.103 Sum_probs=82.4
Q ss_pred ceeEEEEcCCCCchhHHHHHHhhCCCCCcc------cC--ceeeee-----eEEEEE--------------------CCe
Q psy4710 5 RKKLVIVGDGACGKTCLLIVFSKDQFPEVY------VP--TVFENY-----VADIEV--------------------DSK 51 (192)
Q Consensus 5 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~------~~--~~~~~~-----~~~~~~--------------------~~~ 51 (192)
...|+++|+.|||||||+++++........ .. ...... ...+.. ...
T Consensus 22 ~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~l~~~~~~ 101 (207)
T TIGR00073 22 LVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHALEDLPLD 101 (207)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHHHHHhccC
Confidence 567899999999999999998764110000 00 000000 000000 011
Q ss_pred EEEEEEEeCCCCCcccccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhh
Q psy4710 52 QVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKEL 131 (192)
Q Consensus 52 ~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~ 131 (192)
...+.++++.|.-.... .+....+..+.++|+.+.+.... ..... ...|.++++||+|+.+...
T Consensus 102 ~~d~IiIEt~G~l~~~~---~~~~~~~~~i~Vvd~~~~d~~~~---~~~~~-----~~~a~iiv~NK~Dl~~~~~----- 165 (207)
T TIGR00073 102 DIDLLFIENVGNLVCPA---DFDLGEHMRVVLLSVTEGDDKPL---KYPGM-----FKEADLIVINKADLAEAVG----- 165 (207)
T ss_pred CCCEEEEecCCCcCCCc---ccccccCeEEEEEecCcccchhh---hhHhH-----HhhCCEEEEEHHHccccch-----
Confidence 23567788877211111 11123455667888775432111 11111 1578899999999965211
Q ss_pred hhccCCCCCHHHHHHH-HHHcCCceEEEeccCCcCCHHHHHHHHHHH
Q psy4710 132 NKMKQEPVKPEEGRAM-AQKINAFAYLECSAKSKEGVREVFETATRA 177 (192)
Q Consensus 132 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~ 177 (192)
....+..+. .+..+..+++++||++++|++++++++.+.
T Consensus 166 -------~~~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~ 205 (207)
T TIGR00073 166 -------FDVEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ 205 (207)
T ss_pred -------hhHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 111222222 222334689999999999999999999774
No 298
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=99.42 E-value=1.8e-12 Score=87.15 Aligned_cols=150 Identities=20% Similarity=0.204 Sum_probs=86.1
Q ss_pred cc-eeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeee---------------EEEEE-------------------
Q psy4710 4 IR-KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYV---------------ADIEV------------------- 48 (192)
Q Consensus 4 ~~-~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~---------------~~~~~------------------- 48 (192)
++ ++|.|.|++|||||+|+.+++..-..+ +.....+... +.+..
T Consensus 11 ~~~~~i~v~Gp~GSGKTaLie~~~~~L~~~-~~~aVI~~Di~t~~Da~~l~~~~g~~i~~v~TG~~CH~da~m~~~ai~~ 89 (202)
T COG0378 11 RPMLRIGVGGPPGSGKTALIEKTLRALKDE-YKIAVITGDIYTKEDADRLRKLPGEPIIGVETGKGCHLDASMNLEAIEE 89 (202)
T ss_pred CceEEEEecCCCCcCHHHHHHHHHHHHHhh-CCeEEEeceeechhhHHHHHhCCCCeeEEeccCCccCCcHHHHHHHHHH
Confidence 45 799999999999999998876532211 1111100000 00000
Q ss_pred ---CCeEEEEEEEeCCCCCcccccccccCC-CCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCC
Q psy4710 49 ---DSKQVELALWDTAGQEDYDRLRPLSYP-DTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRND 124 (192)
Q Consensus 49 ---~~~~~~~~l~D~~g~~~~~~~~~~~~~-~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 124 (192)
......+.+++..| ... .+.... ..+.-|+|+|++.++.... .-.+.+ -..-++|+||.|+.+.
T Consensus 90 l~~~~~~~Dll~iEs~G--NL~--~~~sp~L~d~~~v~VidvteGe~~P~---K~gP~i-----~~aDllVInK~DLa~~ 157 (202)
T COG0378 90 LVLDFPDLDLLFIESVG--NLV--CPFSPDLGDHLRVVVIDVTEGEDIPR---KGGPGI-----FKADLLVINKTDLAPY 157 (202)
T ss_pred HhhcCCcCCEEEEecCc--cee--cccCcchhhceEEEEEECCCCCCCcc---cCCCce-----eEeeEEEEehHHhHHH
Confidence 01113556666666 111 111112 2348899999988643211 101111 1245899999999884
Q ss_pred ccchhhhhhccCCCCCHHH-HHHHHHHcCCceEEEeccCCcCCHHHHHHHHHHHH
Q psy4710 125 PNTIKELNKMKQEPVKPEE-GRAMAQKINAFAYLECSAKSKEGVREVFETATRAA 178 (192)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~~ 178 (192)
.. ...+. .+...+..+..|++++|+++|+|++++++++....
T Consensus 158 v~------------~dlevm~~da~~~np~~~ii~~n~ktg~G~~~~~~~i~~~~ 200 (202)
T COG0378 158 VG------------ADLEVMARDAKEVNPEAPIIFTNLKTGEGLDEWLRFIEPQA 200 (202)
T ss_pred hC------------ccHHHHHHHHHHhCCCCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence 32 22233 33344556668999999999999999999987654
No 299
>KOG0458|consensus
Probab=99.42 E-value=2.6e-12 Score=98.64 Aligned_cols=156 Identities=17% Similarity=0.165 Sum_probs=97.5
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCC----------------------CCCcc--------cCceeeeeeEEEEECCeEE
Q psy4710 4 IRKKLVIVGDGACGKTCLLIVFSKDQ----------------------FPEVY--------VPTVFENYVADIEVDSKQV 53 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~----------------------~~~~~--------~~~~~~~~~~~~~~~~~~~ 53 (192)
-.+..+++|+..+|||||+-+++..- +.... ...+.+-......++....
T Consensus 176 ~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~~~ 255 (603)
T KOG0458|consen 176 DHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESKSK 255 (603)
T ss_pred cceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecCce
Confidence 36789999999999999998876511 00000 0011112223345566677
Q ss_pred EEEEEeCCCCCcccccccccCCCCCEEEEEEECCChhhhhch------hhhhHHHHhhhCCCCcEEEEeecccccCCccc
Q psy4710 54 ELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENI------PEKWTPEVKHFCPNVPIILVGNKKDLRNDPNT 127 (192)
Q Consensus 54 ~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~------~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~ 127 (192)
.+++.|.|||.+|-.........+|++++|+|++.. .|+.- .......+ +...-..+||++||+|+.+=..
T Consensus 256 ~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~-~FE~gfd~~gQtrEha~ll-r~Lgi~qlivaiNKmD~V~Wsq- 332 (603)
T KOG0458|consen 256 IVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTG-EFESGFDPGGQTREHALLL-RSLGISQLIVAINKMDLVSWSQ- 332 (603)
T ss_pred eEEEecCCCccccchhhhccccccceEEEEEECCcc-hhhhccCCCCchHHHHHHH-HHcCcceEEEEeecccccCccH-
Confidence 899999999999999888888999999999999864 23221 11122222 2233567899999999976211
Q ss_pred hhhhhhccCCCCCHHHHHHHH-HHcC----CceEEEeccCCcCCHHH
Q psy4710 128 IKELNKMKQEPVKPEEGRAMA-QKIN----AFAYLECSAKSKEGVRE 169 (192)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~Sa~~~~gi~~ 169 (192)
+.+.. + ......|. +..+ .+.|+++|+..|+|+-.
T Consensus 333 -~RF~e-----I-k~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k 372 (603)
T KOG0458|consen 333 -DRFEE-----I-KNKLSSFLKESCGFKESSVKFIPISGLSGENLIK 372 (603)
T ss_pred -HHHHH-----H-HHHHHHHHHHhcCcccCCcceEecccccCCcccc
Confidence 11100 0 11122232 2222 25799999999999743
No 300
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.42 E-value=4.9e-12 Score=94.55 Aligned_cols=155 Identities=14% Similarity=0.166 Sum_probs=92.3
Q ss_pred ceeEEEEcCCCCchhHHHHHHhhC----CCC-------------CcccC---ceeeeee---EEEEE---CCeEEEEEEE
Q psy4710 5 RKKLVIVGDGACGKTCLLIVFSKD----QFP-------------EVYVP---TVFENYV---ADIEV---DSKQVELALW 58 (192)
Q Consensus 5 ~~~i~v~G~~~~GKSsli~~l~~~----~~~-------------~~~~~---~~~~~~~---~~~~~---~~~~~~~~l~ 58 (192)
++-|+|+|+.++|||||+|+|++. ... ..... ++++... ..+.+ ++-...+.++
T Consensus 17 ~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~VrlI 96 (492)
T TIGR02836 17 DIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRLV 96 (492)
T ss_pred cEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEEE
Confidence 578999999999999999999987 322 11011 1111111 12222 3445789999
Q ss_pred eCCCCCccc--------c-----------c----------ccccCC-CCCEEEEEE-ECC----ChhhhhchhhhhHHHH
Q psy4710 59 DTAGQEDYD--------R-----------L----------RPLSYP-DTDVILMCF-SID----SPDSLENIPEKWTPEV 103 (192)
Q Consensus 59 D~~g~~~~~--------~-----------~----------~~~~~~-~~~~~i~v~-d~~----~~~~~~~~~~~~~~~~ 103 (192)
||+|-..-. . . +...+. .+++.|+|. |.+ .++.+....+.+...+
T Consensus 97 DcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~eL 176 (492)
T TIGR02836 97 DCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEEL 176 (492)
T ss_pred ECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHHH
Confidence 999932211 0 0 112233 789999887 653 1234566666788888
Q ss_pred hhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccC--CcCCHHHHHHHHHH
Q psy4710 104 KHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAK--SKEGVREVFETATR 176 (192)
Q Consensus 104 ~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~--~~~gi~~~~~~i~~ 176 (192)
+.. ++|+++++||.|-..+ .......++.+.++ .|++.+|+. +.+.|..+++.+..
T Consensus 177 k~~--~kPfiivlN~~dp~~~--------------et~~l~~~l~eky~-vpvl~v~c~~l~~~DI~~il~~vL~ 234 (492)
T TIGR02836 177 KEL--NKPFIILLNSTHPYHP--------------ETEALRQELEEKYD-VPVLAMDVESMRESDILSVLEEVLY 234 (492)
T ss_pred Hhc--CCCEEEEEECcCCCCc--------------hhHHHHHHHHHHhC-CceEEEEHHHcCHHHHHHHHHHHHh
Confidence 876 8999999999994321 12222335555566 466666554 34445555554443
No 301
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.41 E-value=1.6e-13 Score=102.08 Aligned_cols=170 Identities=14% Similarity=0.127 Sum_probs=83.4
Q ss_pred ccceeEEEEcCCCCchhHHHHHHhhCCCCCcc-cCce---eeeeeEEEEECCeEEEEEEEeCCCCCccccc-----cccc
Q psy4710 3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVY-VPTV---FENYVADIEVDSKQVELALWDTAGQEDYDRL-----RPLS 73 (192)
Q Consensus 3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~-----~~~~ 73 (192)
..+++|+|+|.+|+|||||+|+|.+-...+.. -+++ ++.....+.. -..-.+.+||+||....... ...-
T Consensus 33 ~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~-p~~pnv~lWDlPG~gt~~f~~~~Yl~~~~ 111 (376)
T PF05049_consen 33 NAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPH-PKFPNVTLWDLPGIGTPNFPPEEYLKEVK 111 (376)
T ss_dssp H--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE--SS-TTEEEEEE--GGGSS--HHHHHHHTT
T ss_pred cCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCC-CCCCCCeEEeCCCCCCCCCCHHHHHHHcc
Confidence 46899999999999999999999764332211 1111 1111111111 12225899999994221111 1223
Q ss_pred CCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCC----HHHHHHHHH
Q psy4710 74 YPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVK----PEEGRAMAQ 149 (192)
Q Consensus 74 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 149 (192)
+...|.+|++.+ ++ |....-.+...+.+. ++|+.+|-||+|..-..+. ...++... .++.++.+.
T Consensus 112 ~~~yD~fiii~s--~r--f~~ndv~La~~i~~~--gK~fyfVRTKvD~Dl~~~~-----~~~p~~f~~e~~L~~IR~~c~ 180 (376)
T PF05049_consen 112 FYRYDFFIIISS--ER--FTENDVQLAKEIQRM--GKKFYFVRTKVDSDLYNER-----RRKPRTFNEEKLLQEIRENCL 180 (376)
T ss_dssp GGG-SEEEEEES--SS----HHHHHHHHHHHHT--T-EEEEEE--HHHHHHHHH-----CC-STT--HHTHHHHHHHHHH
T ss_pred ccccCEEEEEeC--CC--CchhhHHHHHHHHHc--CCcEEEEEecccccHhhhh-----ccCCcccCHHHHHHHHHHHHH
Confidence 456798777654 22 433333455666666 8999999999996211110 00111111 223333322
Q ss_pred H------cCCceEEEeccCCc--CCHHHHHHHHHHHHhhhccc
Q psy4710 150 K------INAFAYLECSAKSK--EGVREVFETATRAALQVKKK 184 (192)
Q Consensus 150 ~------~~~~~~~~~Sa~~~--~gi~~~~~~i~~~~~~~~~~ 184 (192)
. ....++|-+|+.+- .+...+.+.+.+.+...++.
T Consensus 181 ~~L~k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~Kr~ 223 (376)
T PF05049_consen 181 ENLQKAGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAHKRH 223 (376)
T ss_dssp HHHHCTT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GGGHH
T ss_pred HHHHHcCCCcCceEEEeCCCcccCChHHHHHHHHHHhHHHHHH
Confidence 1 12246888998864 45778888888888877653
No 302
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.40 E-value=8.9e-13 Score=105.63 Aligned_cols=119 Identities=21% Similarity=0.087 Sum_probs=84.3
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCC--CCC---cc------------cCceeeeeeEEEEECCe-EEEEEEEeCCCCCc
Q psy4710 4 IRKKLVIVGDGACGKTCLLIVFSKDQ--FPE---VY------------VPTVFENYVADIEVDSK-QVELALWDTAGQED 65 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~--~~~---~~------------~~~~~~~~~~~~~~~~~-~~~~~l~D~~g~~~ 65 (192)
.-.+|.|+|+..+|||||..+++... ... .. ...+.+..........+ ...+.++|||||-+
T Consensus 9 ~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGHVD 88 (697)
T COG0480 9 RIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGHVD 88 (697)
T ss_pred cceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCccc
Confidence 45689999999999999999987522 110 00 00011111222233344 48899999999999
Q ss_pred ccccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCcc
Q psy4710 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPN 126 (192)
Q Consensus 66 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~ 126 (192)
|.......++.+|++++|+|+...- +...+..+....++ ++|.++++||+|....+.
T Consensus 89 Ft~EV~rslrvlDgavvVvdaveGV--~~QTEtv~rqa~~~--~vp~i~fiNKmDR~~a~~ 145 (697)
T COG0480 89 FTIEVERSLRVLDGAVVVVDAVEGV--EPQTETVWRQADKY--GVPRILFVNKMDRLGADF 145 (697)
T ss_pred cHHHHHHHHHhhcceEEEEECCCCe--eecHHHHHHHHhhc--CCCeEEEEECccccccCh
Confidence 9999999999999999999999873 33334555555554 899999999999976443
No 303
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.39 E-value=1.3e-12 Score=97.59 Aligned_cols=158 Identities=13% Similarity=0.040 Sum_probs=104.0
Q ss_pred eEEEEcCCCCchhHHHHHHhhCCCCCc---ccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEE
Q psy4710 7 KLVIVGDGACGKTCLLIVFSKDQFPEV---YVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMC 83 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v 83 (192)
-|+-.|+..-|||||+.++.+..-... ....++... .-...+.++..+.++|.||++++-+.....+...|.+++|
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDl-g~~y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alLv 80 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDL-GFYYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALLV 80 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEee-eeEeccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEEE
Confidence 477889999999999999988653322 122222111 1112344455899999999999988877788889999999
Q ss_pred EECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccCC
Q psy4710 84 FSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKS 163 (192)
Q Consensus 84 ~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 163 (192)
++.++.-..+.. ..+..+.-. .....+||+||+|..++.... ....+-...+. +.+.++|.+|+.+
T Consensus 81 V~~deGl~~qtg--EhL~iLdll-gi~~giivltk~D~~d~~r~e---------~~i~~Il~~l~--l~~~~i~~~s~~~ 146 (447)
T COG3276 81 VAADEGLMAQTG--EHLLILDLL-GIKNGIIVLTKADRVDEARIE---------QKIKQILADLS--LANAKIFKTSAKT 146 (447)
T ss_pred EeCccCcchhhH--HHHHHHHhc-CCCceEEEEeccccccHHHHH---------HHHHHHHhhcc--ccccccccccccc
Confidence 999765322222 222222222 235569999999987642110 01111111122 4556889999999
Q ss_pred cCCHHHHHHHHHHHHh
Q psy4710 164 KEGVREVFETATRAAL 179 (192)
Q Consensus 164 ~~gi~~~~~~i~~~~~ 179 (192)
|+||+++.+.|.....
T Consensus 147 g~GI~~Lk~~l~~L~~ 162 (447)
T COG3276 147 GRGIEELKNELIDLLE 162 (447)
T ss_pred CCCHHHHHHHHHHhhh
Confidence 9999999999999885
No 304
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.39 E-value=1.8e-12 Score=92.78 Aligned_cols=96 Identities=26% Similarity=0.378 Sum_probs=73.3
Q ss_pred CcccccccccCCCCCEEEEEEECCChh-hhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHH
Q psy4710 64 EDYDRLRPLSYPDTDVILMCFSIDSPD-SLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPE 142 (192)
Q Consensus 64 ~~~~~~~~~~~~~~~~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 142 (192)
+++..+.+.++.++|.+++|+|+.++. ++..+ +.|+..+.. .+.|+++|+||+|+.+. +....+
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l-~r~l~~~~~--~~i~~vIV~NK~DL~~~------------~~~~~~ 88 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQL-DRFLVVAEA--QNIEPIIVLNKIDLLDD------------EDMEKE 88 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHH-HHHHHHHHH--CCCCEEEEEECcccCCC------------HHHHHH
Confidence 567777778899999999999999887 77777 477776654 48999999999999652 112223
Q ss_pred HHHHHHHHcCCceEEEeccCCcCCHHHHHHHHHH
Q psy4710 143 EGRAMAQKINAFAYLECSAKSKEGVREVFETATR 176 (192)
Q Consensus 143 ~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~ 176 (192)
+...+. ..+ ++++++||+++.|++++|+.+..
T Consensus 89 ~~~~~~-~~g-~~v~~~SAktg~gi~eLf~~l~~ 120 (245)
T TIGR00157 89 QLDIYR-NIG-YQVLMTSSKNQDGLKELIEALQN 120 (245)
T ss_pred HHHHHH-HCC-CeEEEEecCCchhHHHHHhhhcC
Confidence 333343 345 68999999999999999998764
No 305
>PTZ00258 GTP-binding protein; Provisional
Probab=99.38 E-value=1.5e-11 Score=92.69 Aligned_cols=84 Identities=20% Similarity=0.131 Sum_probs=54.8
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeE-EEEECCe---------------EEEEEEEeCCCCCccc
Q psy4710 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDSK---------------QVELALWDTAGQEDYD 67 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~---------------~~~~~l~D~~g~~~~~ 67 (192)
..++|+++|.||+|||||+|+|.+........|.++..... .+...+. ...+.++|+||...-.
T Consensus 20 ~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ga 99 (390)
T PTZ00258 20 NNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKGA 99 (390)
T ss_pred CCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcCC
Confidence 46799999999999999999998876544333443322211 1222211 2358999999954321
Q ss_pred c-------cccccCCCCCEEEEEEECC
Q psy4710 68 R-------LRPLSYPDTDVILMCFSID 87 (192)
Q Consensus 68 ~-------~~~~~~~~~~~~i~v~d~~ 87 (192)
+ .....++.+|++++|+|..
T Consensus 100 ~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 100 SEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred cchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 1 1122457899999999984
No 306
>KOG1707|consensus
Probab=99.37 E-value=2.3e-11 Score=93.55 Aligned_cols=163 Identities=23% Similarity=0.305 Sum_probs=114.6
Q ss_pred ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEE
Q psy4710 3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 81 (192)
Q Consensus 3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i 81 (192)
+.-+++.++|+.++|||.+++.++++.+......+....+ ...+...+....+.+.|.+-. ........- ..+|.+.
T Consensus 423 R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv~~ 500 (625)
T KOG1707|consen 423 RKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACDVAC 500 (625)
T ss_pred ceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceeeeEE
Confidence 3568899999999999999999999888775544444444 334444566667888888764 222222222 6789999
Q ss_pred EEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEecc
Q psy4710 82 MCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSA 161 (192)
Q Consensus 82 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 161 (192)
++||.+++.++......+...... ...|+++|++|+|+.+.. ++..... .+++++++.-+.+.+|.
T Consensus 501 ~~YDsS~p~sf~~~a~v~~~~~~~--~~~Pc~~va~K~dlDe~~----------Q~~~iqp--de~~~~~~i~~P~~~S~ 566 (625)
T KOG1707|consen 501 LVYDSSNPRSFEYLAEVYNKYFDL--YKIPCLMVATKADLDEVP----------QRYSIQP--DEFCRQLGLPPPIHISS 566 (625)
T ss_pred EecccCCchHHHHHHHHHHHhhhc--cCCceEEEeeccccchhh----------hccCCCh--HHHHHhcCCCCCeeecc
Confidence 999999999988775333222222 489999999999997743 1222222 68888888666677777
Q ss_pred CCcCCHHHHHHHHHHHHhhhc
Q psy4710 162 KSKEGVREVFETATRAALQVK 182 (192)
Q Consensus 162 ~~~~gi~~~~~~i~~~~~~~~ 182 (192)
+.... .++|..|..++..++
T Consensus 567 ~~~~s-~~lf~kL~~~A~~Ph 586 (625)
T KOG1707|consen 567 KTLSS-NELFIKLATMAQYPH 586 (625)
T ss_pred CCCCC-chHHHHHHHhhhCCC
Confidence 75333 899999988887766
No 307
>KOG3886|consensus
Probab=99.37 E-value=1.4e-12 Score=89.48 Aligned_cols=125 Identities=17% Similarity=0.283 Sum_probs=85.0
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCCCC-cccCceeeeeeEEEEECCeEEEEEEEeCCCCCcc-----cccccccCCCC
Q psy4710 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPE-VYVPTVFENYVADIEVDSKQVELALWDTAGQEDY-----DRLRPLSYPDT 77 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~-----~~~~~~~~~~~ 77 (192)
++-||+++|.+||||||+-..+..+...- ...++.+....+.-..-.++..+.+||++|++.+ .......+++.
T Consensus 3 ~~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe~fmen~~~~q~d~iF~nV 82 (295)
T KOG3886|consen 3 MKKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQEEFMENYLSSQEDNIFRNV 82 (295)
T ss_pred ccceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhhheeehhccCCcHHHHHHHHhhcchhhheeh
Confidence 56799999999999999887776544322 2122222222222122234578999999998753 33556788899
Q ss_pred CEEEEEEECCChhhhhchh--hhhHHHHhhhCCCCcEEEEeecccccCCccch
Q psy4710 78 DVILMCFSIDSPDSLENIP--EKWTPEVKHFCPNVPIILVGNKKDLRNDPNTI 128 (192)
Q Consensus 78 ~~~i~v~d~~~~~~~~~~~--~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~ 128 (192)
+++++|+|+...+--.++. +.-++.+.++.|...+.+.++|+|+...+...
T Consensus 83 ~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~~d~r~ 135 (295)
T KOG3886|consen 83 QVLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCLLHKMDLVQEDARE 135 (295)
T ss_pred eeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCcceEEEEEeechhcccchHH
Confidence 9999999998865333332 23445666777888899999999998866543
No 308
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.35 E-value=1.5e-12 Score=88.18 Aligned_cols=63 Identities=21% Similarity=0.245 Sum_probs=43.1
Q ss_pred EEEEEeCCCCCc----ccccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecc
Q psy4710 54 ELALWDTAGQED----YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKK 119 (192)
Q Consensus 54 ~~~l~D~~g~~~----~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~ 119 (192)
.+.|+|+||... ....+..+++.+|++|+|.++.....-... +.+....... ...+++|.||.
T Consensus 102 ~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~-~~l~~~~~~~--~~~~i~V~nk~ 168 (168)
T PF00350_consen 102 NLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDM-EFLKQMLDPD--KSRTIFVLNKA 168 (168)
T ss_dssp SEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHH-HHHHHHHTTT--CSSEEEEEE-G
T ss_pred ceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHH-HHHHHHhcCC--CCeEEEEEcCC
Confidence 489999999533 234456677899999999999986443333 3555555544 44589999985
No 309
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=99.35 E-value=1.7e-11 Score=78.72 Aligned_cols=113 Identities=35% Similarity=0.452 Sum_probs=77.3
Q ss_pred eeEEEEcCCCCchhHHHHHHhhCCCCCccc-CceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEEE
Q psy4710 6 KKLVIVGDGACGKTCLLIVFSKDQFPEVYV-PTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF 84 (192)
Q Consensus 6 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 84 (192)
+||+++|..|+|||+|+.++....+...+. ++.. +........+.++.+++|+
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~--------------------------~~~~~~~~~~s~~~~~~v~ 54 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG--------------------------IDVYDPTSYESFDVVLQCW 54 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhh--------------------------hhhccccccCCCCEEEEEE
Confidence 589999999999999999998777754322 2211 2233344567789999999
Q ss_pred ECCChhhhhchhhhhHHHHhhhC-CCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccCC
Q psy4710 85 SIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKS 163 (192)
Q Consensus 85 d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 163 (192)
+..+.++++.. |...+.... .+.|.++++||.|+... ........ .+++++|+++
T Consensus 55 ~~~~~~s~~~~---~~~~i~~~~k~dl~~~~~~nk~dl~~~------------~~~~~~~~---------~~~~~~s~~~ 110 (124)
T smart00010 55 RVDDRDSADNK---NVPEVLVGNKSDLPILVGGNRDVLEEE------------RQVATEEG---------LEFAETSAKT 110 (124)
T ss_pred EccCHHHHHHH---hHHHHHhcCCCCCcEEEEeechhhHhh------------CcCCHHHH---------HHHHHHhCCC
Confidence 99998887654 655554432 46889999999997442 12222222 2455688899
Q ss_pred cCCHH
Q psy4710 164 KEGVR 168 (192)
Q Consensus 164 ~~gi~ 168 (192)
+.|+.
T Consensus 111 ~~~~~ 115 (124)
T smart00010 111 PEEGE 115 (124)
T ss_pred cchhh
Confidence 99885
No 310
>KOG1486|consensus
Probab=99.33 E-value=6.6e-11 Score=82.55 Aligned_cols=92 Identities=17% Similarity=0.182 Sum_probs=63.2
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCCCCcc-cCceeeeeeEEEEECCeEEEEEEEeCCCCCcc-------cccccccCC
Q psy4710 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVY-VPTVFENYVADIEVDSKQVELALWDTAGQEDY-------DRLRPLSYP 75 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~-------~~~~~~~~~ 75 (192)
-.-||+++|-|.+|||||+..+..-...... ..++-+...- .+.+.+..+++.|.||.-.- ........+
T Consensus 61 GdaRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpG--vi~y~ga~IQllDLPGIieGAsqgkGRGRQviavAr 138 (364)
T KOG1486|consen 61 GDARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPG--VIHYNGANIQLLDLPGIIEGASQGKGRGRQVIAVAR 138 (364)
T ss_pred CCeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecc--eEEecCceEEEecCcccccccccCCCCCceEEEEee
Confidence 3568999999999999999999886654443 3333333322 33445667899999994332 233445677
Q ss_pred CCCEEEEEEECCChhhhhchhh
Q psy4710 76 DTDVILMCFSIDSPDSLENIPE 97 (192)
Q Consensus 76 ~~~~~i~v~d~~~~~~~~~~~~ 97 (192)
.+|.+++|+|++..+.-..+.+
T Consensus 139 taDlilMvLDatk~e~qr~~le 160 (364)
T KOG1486|consen 139 TADLILMVLDATKSEDQREILE 160 (364)
T ss_pred cccEEEEEecCCcchhHHHHHH
Confidence 8999999999998755443333
No 311
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.31 E-value=1.3e-11 Score=91.04 Aligned_cols=110 Identities=15% Similarity=0.122 Sum_probs=64.1
Q ss_pred EEEEEEEeCCCCCcccccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhh
Q psy4710 52 QVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKEL 131 (192)
Q Consensus 52 ~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~ 131 (192)
++.+.++||+|.-... ......+|.++++......+.++... ..+ .++|.++++||+|+..........
T Consensus 126 g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~~~~el~~~~----~~l----~~~~~ivv~NK~Dl~~~~~~~~~~ 194 (300)
T TIGR00750 126 GYDVIIVETVGVGQSE---VDIANMADTFVVVTIPGTGDDLQGIK----AGL----MEIADIYVVNKADGEGATNVTIAR 194 (300)
T ss_pred CCCEEEEeCCCCchhh---hHHHHhhceEEEEecCCccHHHHHHH----HHH----hhhccEEEEEcccccchhHHHHHH
Confidence 5678999999843211 22456678888885444333332221 212 267889999999987643210000
Q ss_pred hhccCCCCCHHHHHHHHH---HcCCceEEEeccCCcCCHHHHHHHHHHHHh
Q psy4710 132 NKMKQEPVKPEEGRAMAQ---KINAFAYLECSAKSKEGVREVFETATRAAL 179 (192)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~Sa~~~~gi~~~~~~i~~~~~ 179 (192)
..+ ......+.. .+. .+++++||+++.|++++++++.+...
T Consensus 195 ~~~------~~~l~~l~~~~~~~~-~~v~~iSA~~g~Gi~~L~~~i~~~~~ 238 (300)
T TIGR00750 195 LML------ALALEEIRRREDGWR-PPVLTTSAVEGRGIDELWDAIEEHKT 238 (300)
T ss_pred HHH------HHHHhhccccccCCC-CCEEEEEccCCCCHHHHHHHHHHHHH
Confidence 000 000001111 122 36899999999999999999988744
No 312
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.30 E-value=1.3e-10 Score=84.51 Aligned_cols=119 Identities=18% Similarity=0.207 Sum_probs=68.7
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCCCCcc---c-------Cce-eeeeeEEEEECCeEEEEEEEeCCCCCccc-----
Q psy4710 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVY---V-------PTV-FENYVADIEVDSKQVELALWDTAGQEDYD----- 67 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~---~-------~~~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~----- 67 (192)
..++|+|+|.+|+|||||+|.|++....... . .+. .......+.-++..+.+.++||||..+..
T Consensus 3 ~~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~ 82 (281)
T PF00735_consen 3 FNFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDC 82 (281)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhh
Confidence 3689999999999999999999986543321 0 011 11112233446677899999999922110
Q ss_pred ---------------------cc-ccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCc
Q psy4710 68 ---------------------RL-RPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDP 125 (192)
Q Consensus 68 ---------------------~~-~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 125 (192)
.. ....=...|++|++++.+.. .+..++ +..+++....+++|-|+.|+|.....
T Consensus 83 ~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~-~L~~~D---i~~mk~Ls~~vNvIPvIaKaD~lt~~ 158 (281)
T PF00735_consen 83 WEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGH-GLKPLD---IEFMKRLSKRVNVIPVIAKADTLTPE 158 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSS-SS-HHH---HHHHHHHTTTSEEEEEESTGGGS-HH
T ss_pred hHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCc-cchHHH---HHHHHHhcccccEEeEEecccccCHH
Confidence 00 01111247899999987652 233332 23344444479999999999997744
Q ss_pred c
Q psy4710 126 N 126 (192)
Q Consensus 126 ~ 126 (192)
+
T Consensus 159 e 159 (281)
T PF00735_consen 159 E 159 (281)
T ss_dssp H
T ss_pred H
Confidence 3
No 313
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=99.29 E-value=4.2e-11 Score=91.50 Aligned_cols=128 Identities=19% Similarity=0.214 Sum_probs=82.9
Q ss_pred eEEEEEEEeCCCCCcccccccccCCCCCEEEEEEECCChhh----------hhchhhhhHHHHh-hhCCCCcEEEEeecc
Q psy4710 51 KQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDS----------LENIPEKWTPEVK-HFCPNVPIILVGNKK 119 (192)
Q Consensus 51 ~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~----------~~~~~~~~~~~~~-~~~~~~p~ivv~nK~ 119 (192)
+...+.++|++|+...+..|.+++.+++++|||+++++.+. +.+....|...+. ..+.+.|+||++||.
T Consensus 234 ~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~ 313 (389)
T PF00503_consen 234 GSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKI 313 (389)
T ss_dssp TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-H
T ss_pred cccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecH
Confidence 45678999999999999999999999999999999987543 1111122223332 244689999999999
Q ss_pred cccCCccchhh-hhhccCCC-----CCHHHHHHHHHH--------c---CCceEEEeccCCcCCHHHHHHHHHHHH
Q psy4710 120 DLRNDPNTIKE-LNKMKQEP-----VKPEEGRAMAQK--------I---NAFAYLECSAKSKEGVREVFETATRAA 178 (192)
Q Consensus 120 D~~~~~~~~~~-~~~~~~~~-----~~~~~~~~~~~~--------~---~~~~~~~~Sa~~~~gi~~~~~~i~~~~ 178 (192)
|+....-.... +....+.. -..+.+..+... . ..+.+..++|.+..++..+|+.+.+.+
T Consensus 314 D~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v~~~v~~~i 389 (389)
T PF00503_consen 314 DLFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKVFNAVKDII 389 (389)
T ss_dssp HHHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHHHHHhcCcC
Confidence 99764333222 22222222 223444433321 1 223456799999999999999887643
No 314
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=99.28 E-value=1e-11 Score=88.37 Aligned_cols=167 Identities=17% Similarity=0.193 Sum_probs=107.6
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCC----------C------CCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCccc
Q psy4710 4 IRKKLVIVGDGACGKTCLLIVFSKDQ----------F------PEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYD 67 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~----------~------~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~ 67 (192)
..++|..+|+.+-|||||..++...- + +.......+ .....+.++-.+..+-.+|+|||.+|-
T Consensus 11 phVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGIT-Intahveyet~~rhyahVDcPGHaDYv 89 (394)
T COG0050 11 PHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGIT-INTAHVEYETANRHYAHVDCPGHADYV 89 (394)
T ss_pred CeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCce-eccceeEEecCCceEEeccCCChHHHH
Confidence 46899999999999999998876411 0 111111111 122334555556677889999999988
Q ss_pred ccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCc-EEEEeecccccCCccchhhhhhccCCCCCHHHHHH
Q psy4710 68 RLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVP-IILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRA 146 (192)
Q Consensus 68 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (192)
.....-.-++|+.|+|+.+.+.-.-+... . +-+.+.. +.| +++++||+|+.++.+..+.. .-+.++
T Consensus 90 KNMItgAaqmDgAILVVsA~dGpmPqTrE-H-iLlarqv--Gvp~ivvflnK~Dmvdd~ellelV---------emEvre 156 (394)
T COG0050 90 KNMITGAAQMDGAILVVAATDGPMPQTRE-H-ILLARQV--GVPYIVVFLNKVDMVDDEELLELV---------EMEVRE 156 (394)
T ss_pred HHHhhhHHhcCccEEEEEcCCCCCCcchh-h-hhhhhhc--CCcEEEEEEecccccCcHHHHHHH---------HHHHHH
Confidence 77666667899999999999864333321 1 1122222 665 56888999999865543322 345566
Q ss_pred HHHHcCC----ceEEEeccCCc-C-------CHHHHHHHHHHHHhhhccc
Q psy4710 147 MAQKINA----FAYLECSAKSK-E-------GVREVFETATRAALQVKKK 184 (192)
Q Consensus 147 ~~~~~~~----~~~~~~Sa~~~-~-------gi~~~~~~i~~~~~~~~~~ 184 (192)
+...++. .|++.-||+.. + .|.+|++.+-..+..+.+.
T Consensus 157 LLs~y~f~gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip~Per~ 206 (394)
T COG0050 157 LLSEYGFPGDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIPTPERD 206 (394)
T ss_pred HHHHcCCCCCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcCCCCCCc
Confidence 6666642 47777777642 2 3577777777777666654
No 315
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=99.27 E-value=2.4e-11 Score=85.64 Aligned_cols=107 Identities=18% Similarity=0.163 Sum_probs=65.1
Q ss_pred EEEEEEeCCCCCcccccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhh
Q psy4710 53 VELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELN 132 (192)
Q Consensus 53 ~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~ 132 (192)
+.+.+++|.|--.-. .....-+|.+++|+...-.+.++.++.-+++. .-++|+||.|..........+.
T Consensus 122 ~D~IiiETVGvGQsE---~~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEi--------aDi~vVNKaD~~gA~~~~~~l~ 190 (266)
T PF03308_consen 122 FDVIIIETVGVGQSE---VDIADMADTVVLVLVPGLGDEIQAIKAGIMEI--------ADIFVVNKADRPGADRTVRDLR 190 (266)
T ss_dssp -SEEEEEEESSSTHH---HHHHTTSSEEEEEEESSTCCCCCTB-TTHHHH---------SEEEEE--SHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCccH---HHHHHhcCeEEEEecCCCccHHHHHhhhhhhh--------ccEEEEeCCChHHHHHHHHHHH
Confidence 467788887721111 12345689999999998888888887666655 3399999999655322111110
Q ss_pred hccCCCCCHHHHHHHHHH---cCCceEEEeccCCcCCHHHHHHHHHHHHhh
Q psy4710 133 KMKQEPVKPEEGRAMAQK---INAFAYLECSAKSKEGVREVFETATRAALQ 180 (192)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~Sa~~~~gi~~~~~~i~~~~~~ 180 (192)
....+... ....|++.+||.++.|++++++.|.++...
T Consensus 191 ----------~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~~~ 231 (266)
T PF03308_consen 191 ----------SMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHRDY 231 (266)
T ss_dssp ----------HHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHHHH
T ss_pred ----------HHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 00111111 011589999999999999999999876543
No 316
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=99.26 E-value=1.2e-11 Score=88.29 Aligned_cols=115 Identities=17% Similarity=0.126 Sum_probs=71.2
Q ss_pred EEEEEEEeCCCCCcccccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhh
Q psy4710 52 QVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKEL 131 (192)
Q Consensus 52 ~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~ 131 (192)
++.+.+++|.|--... .....-+|.++++.-..-.+.++.++.-+++. --++|+||.|..........+
T Consensus 143 G~DvIIVETVGvGQse---v~I~~~aDt~~~v~~pg~GD~~Q~iK~GimEi--------aDi~vINKaD~~~A~~a~r~l 211 (323)
T COG1703 143 GYDVIIVETVGVGQSE---VDIANMADTFLVVMIPGAGDDLQGIKAGIMEI--------ADIIVINKADRKGAEKAAREL 211 (323)
T ss_pred CCCEEEEEecCCCcch---hHHhhhcceEEEEecCCCCcHHHHHHhhhhhh--------hheeeEeccChhhHHHHHHHH
Confidence 3567888888732211 12345679999998888788888776555543 349999999965532221111
Q ss_pred hhccCCCCCHHHHHHHHHHcCCceEEEeccCCcCCHHHHHHHHHHHHhhhc
Q psy4710 132 NKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRAALQVK 182 (192)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~~ 182 (192)
........ ..+.......|++.+||.+|+|++++++.|.++.....
T Consensus 212 ~~al~~~~-----~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~~~ 257 (323)
T COG1703 212 RSALDLLR-----EVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRKFLT 257 (323)
T ss_pred HHHHHhhc-----ccccccCCCCceeEeeeccCCCHHHHHHHHHHHHHHHH
Confidence 11000000 00111112258999999999999999999998876553
No 317
>KOG3887|consensus
Probab=99.26 E-value=2.8e-11 Score=83.85 Aligned_cols=170 Identities=14% Similarity=0.238 Sum_probs=106.1
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccc---cccCCCCCEE
Q psy4710 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLR---PLSYPDTDVI 80 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~---~~~~~~~~~~ 80 (192)
...+|+++|...|||||+.........+....--..+.....-.+.+..+.+.+||.|||-.+-.-. ...++++.+.
T Consensus 26 ~kp~ilLMG~rRsGKsSI~KVVFhkMsPneTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gAL 105 (347)
T KOG3887|consen 26 MKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGAL 105 (347)
T ss_pred CCceEEEEeecccCcchhhheeeeccCCCceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeE
Confidence 3467999999999999998887776655432211111111111334466789999999986643322 3467889999
Q ss_pred EEEEECCChhhhhchhhhhHHHHh---hhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHH---cCCc
Q psy4710 81 LMCFSIDSPDSLENIPEKWTPEVK---HFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQK---INAF 154 (192)
Q Consensus 81 i~v~d~~~~~~~~~~~~~~~~~~~---~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 154 (192)
++|+|+.+. -.+.+ ..+...+. +..+++.+=|.+.|.|...+...++...+..++. ..++++. .-.+
T Consensus 106 ifvIDaQdd-y~eal-a~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~-----~d~l~d~gle~v~v 178 (347)
T KOG3887|consen 106 IFVIDAQDD-YMEAL-ARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRT-----NDELADAGLEKVQV 178 (347)
T ss_pred EEEEechHH-HHHHH-HHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHHHHh-----hHHHHhhhhccceE
Confidence 999998763 22333 23332222 3347888999999999988776655544433322 2222222 1113
Q ss_pred eEEEeccCCcCCHHHHHHHHHHHHhhh
Q psy4710 155 AYLECSAKSKEGVREVFETATRAALQV 181 (192)
Q Consensus 155 ~~~~~Sa~~~~gi~~~~~~i~~~~~~~ 181 (192)
.|+.+|. ....|-|.|..+++++...
T Consensus 179 sf~LTSI-yDHSIfEAFSkvVQkLipq 204 (347)
T KOG3887|consen 179 SFYLTSI-YDHSIFEAFSKVVQKLIPQ 204 (347)
T ss_pred EEEEeee-cchHHHHHHHHHHHHHhhh
Confidence 4555554 5577999999988887654
No 318
>KOG1143|consensus
Probab=99.25 E-value=6.7e-11 Score=86.90 Aligned_cols=167 Identities=16% Similarity=0.219 Sum_probs=106.0
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCc-------------e-eeeeeEE-EEE-------------------C
Q psy4710 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPT-------------V-FENYVAD-IEV-------------------D 49 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~-------------~-~~~~~~~-~~~-------------------~ 49 (192)
.++|++++|...+|||||+-.|..+......-.. + +...+.. +.+ +
T Consensus 166 ievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e 245 (591)
T KOG1143|consen 166 IEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVE 245 (591)
T ss_pred eEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHh
Confidence 5899999999999999999888775543321110 0 0011110 011 1
Q ss_pred CeEEEEEEEeCCCCCcccccccccCCC--CCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccc
Q psy4710 50 SKQVELALWDTAGQEDYDRLRPLSYPD--TDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNT 127 (192)
Q Consensus 50 ~~~~~~~l~D~~g~~~~~~~~~~~~~~--~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~ 127 (192)
...--++++|.+|+..|.....+.+.. .|.+++++++...-.+.. +..+.++... +.|+.++++|+|+......
T Consensus 246 ~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tT--rEHLgl~~AL--~iPfFvlvtK~Dl~~~~~~ 321 (591)
T KOG1143|consen 246 KSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTT--REHLGLIAAL--NIPFFVLVTKMDLVDRQGL 321 (591)
T ss_pred hhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCcccc--HHHHHHHHHh--CCCeEEEEEeeccccchhH
Confidence 112358999999999998887776654 788999998887644433 3555666555 8999999999999876433
Q ss_pred hhhhhh------------ccCCCCCHHHHHHHHHH---cCCceEEEeccCCcCCHHHHHHHH
Q psy4710 128 IKELNK------------MKQEPVKPEEGRAMAQK---INAFAYLECSAKSKEGVREVFETA 174 (192)
Q Consensus 128 ~~~~~~------------~~~~~~~~~~~~~~~~~---~~~~~~~~~Sa~~~~gi~~~~~~i 174 (192)
.....+ ...+..+..++..-+++ -+..|+|.+|+..|+|++-+...+
T Consensus 322 ~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~~fL 383 (591)
T KOG1143|consen 322 KKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLRTFL 383 (591)
T ss_pred HHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHHHHH
Confidence 222211 11222333333333333 244799999999999988665443
No 319
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=99.25 E-value=7.3e-11 Score=86.94 Aligned_cols=169 Identities=18% Similarity=0.134 Sum_probs=103.3
Q ss_pred ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCce---------------eeeeeEEEEEC------------------
Q psy4710 3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV---------------FENYVADIEVD------------------ 49 (192)
Q Consensus 3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~---------------~~~~~~~~~~~------------------ 49 (192)
+.++.|.++|+.++|||||+-.|..+...+..-.+- .+.....+.++
T Consensus 115 ~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~~ 194 (527)
T COG5258 115 PEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKAA 194 (527)
T ss_pred CceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHhH
Confidence 467899999999999999998887766554321110 00001111121
Q ss_pred ---CeEEEEEEEeCCCCCccccccc--ccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCC
Q psy4710 50 ---SKQVELALWDTAGQEDYDRLRP--LSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRND 124 (192)
Q Consensus 50 ---~~~~~~~l~D~~g~~~~~~~~~--~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 124 (192)
..+.-+.++|+.||+.|...+. ..-+..|..++++.+++. ........+...... ..|+++++||+|+.++
T Consensus 195 vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG--~~~~tkEHLgi~~a~--~lPviVvvTK~D~~~d 270 (527)
T COG5258 195 VVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDG--VTKMTKEHLGIALAM--ELPVIVVVTKIDMVPD 270 (527)
T ss_pred hhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCC--cchhhhHhhhhhhhh--cCCEEEEEEecccCcH
Confidence 1223589999999999876553 344578999999999886 333333444444433 7999999999999876
Q ss_pred ccchhhhhh-------cc--CCCCCH-HHH--HHHHH--HcCCceEEEeccCCcCCHHHHHHHHH
Q psy4710 125 PNTIKELNK-------MK--QEPVKP-EEG--RAMAQ--KINAFAYLECSAKSKEGVREVFETAT 175 (192)
Q Consensus 125 ~~~~~~~~~-------~~--~~~~~~-~~~--~~~~~--~~~~~~~~~~Sa~~~~gi~~~~~~i~ 175 (192)
.......++ .. +..+.. ... ...+. ..+..|+|.+|+.+|+|++-+.+.+.
T Consensus 271 dr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f~ 335 (527)
T COG5258 271 DRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFFL 335 (527)
T ss_pred HHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHHH
Confidence 554332111 00 011111 111 11111 12247999999999999986655443
No 320
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=99.24 E-value=9.3e-11 Score=84.80 Aligned_cols=58 Identities=17% Similarity=0.025 Sum_probs=40.1
Q ss_pred CCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccCCcCCHHHHHHHHHHH
Q psy4710 109 NVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATRA 177 (192)
Q Consensus 109 ~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~ 177 (192)
..+-++|+||+|+.+... .........+...++..+++++||++++|++++++||...
T Consensus 230 ~~ADIVVLNKiDLl~~~~-----------~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~ 287 (290)
T PRK10463 230 AAASLMLLNKVDLLPYLN-----------FDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred hcCcEEEEEhHHcCcccH-----------HHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 467799999999965210 0011122233344455789999999999999999999764
No 321
>KOG0463|consensus
Probab=99.20 E-value=3.8e-11 Score=88.33 Aligned_cols=167 Identities=14% Similarity=0.172 Sum_probs=100.6
Q ss_pred ccceeEEEEcCCCCchhHHHHHHhhCCCCCcc------------------cCcee---------------------eeee
Q psy4710 3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVY------------------VPTVF---------------------ENYV 43 (192)
Q Consensus 3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~------------------~~~~~---------------------~~~~ 43 (192)
..+.+|+|+|...+|||||+-.|..+...... ....+ .-..
T Consensus 131 F~E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdW 210 (641)
T KOG0463|consen 131 FIEARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDW 210 (641)
T ss_pred ceeEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCcccc
Confidence 46899999999999999999655543322211 00000 0001
Q ss_pred EEEEECCeEEEEEEEeCCCCCcccccccccC--CCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccc
Q psy4710 44 ADIEVDSKQVELALWDTAGQEDYDRLRPLSY--PDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDL 121 (192)
Q Consensus 44 ~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~--~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~ 121 (192)
.++ .+...-.++++|.+|++.|...+..-. ...|..++++-++.. +.......+.+.... ..|+.+|+||+|+
T Consensus 211 vkI-ce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaG--IiGmTKEHLgLALaL--~VPVfvVVTKIDM 285 (641)
T KOG0463|consen 211 VKI-CEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAG--IIGMTKEHLGLALAL--HVPVFVVVTKIDM 285 (641)
T ss_pred eee-ccccceeEEEEeccchhhhhheeeeccccCCCCceEEEeccccc--ceeccHHhhhhhhhh--cCcEEEEEEeecc
Confidence 111 122233589999999999987765443 347888888766543 444433444443333 7999999999999
Q ss_pred cCCccchhhhhhccCCCCCH----------------HHHHHHHHHcCCceEEEeccCCcCCHHHHHHHHH
Q psy4710 122 RNDPNTIKELNKMKQEPVKP----------------EEGRAMAQKINAFAYLECSAKSKEGVREVFETAT 175 (192)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~ 175 (192)
.+++...+.++.+..-..+. ..+..|..+.- +|+|.+|..+|+|++-+...+.
T Consensus 286 CPANiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~-CPIFQvSNVtG~NL~LLkmFLN 354 (641)
T KOG0463|consen 286 CPANILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERV-CPIFQVSNVTGTNLPLLKMFLN 354 (641)
T ss_pred CcHHHHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccc-cceEEeccccCCChHHHHHHHh
Confidence 99877766553322111000 00011212222 5899999999999987665543
No 322
>KOG0705|consensus
Probab=99.20 E-value=4.9e-11 Score=91.25 Aligned_cols=165 Identities=20% Similarity=0.323 Sum_probs=125.3
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEE
Q psy4710 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMC 83 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v 83 (192)
-++|+.|+|..++|||+|+.+++.+.+.... .+.+..+.+.+..++....+.+.|.+|... ..+..-.|++|+|
T Consensus 29 pelk~givg~~~sgktalvhr~ltgty~~~e-~~e~~~~kkE~vv~gqs~lLlirdeg~~~~-----aQft~wvdavIfv 102 (749)
T KOG0705|consen 29 PELKLGIVGTSQSGKTALVHRYLTGTYTQDE-SPEGGRFKKEVVVDGQSHLLLIRDEGGHPD-----AQFCQWVDAVVFV 102 (749)
T ss_pred chhheeeeecccCCceeeeeeeccceecccc-CCcCccceeeEEeeccceEeeeecccCCch-----hhhhhhccceEEE
Confidence 4899999999999999999999998876663 344556677777888888899999988422 2244567999999
Q ss_pred EECCChhhhhchhhhhHHHHhhh-CCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccC
Q psy4710 84 FSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAK 162 (192)
Q Consensus 84 ~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 162 (192)
+.+.+..+++.+......+.... ....|+++++++.-..... .+.+.+.+++.+...+....+|++++.
T Consensus 103 f~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~----------~rv~~da~~r~l~~~~krcsy~et~at 172 (749)
T KOG0705|consen 103 FSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKR----------PRVITDDRARQLSAQMKRCSYYETCAT 172 (749)
T ss_pred EEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhccc----------ccccchHHHHHHHHhcCccceeecchh
Confidence 99999888888753333333221 2368888888876544332 467777888888777766789999999
Q ss_pred CcCCHHHHHHHHHHHHhhhccc
Q psy4710 163 SKEGVREVFETATRAALQVKKK 184 (192)
Q Consensus 163 ~~~gi~~~~~~i~~~~~~~~~~ 184 (192)
+|.+++..|+.+..+....+++
T Consensus 173 yGlnv~rvf~~~~~k~i~~~~~ 194 (749)
T KOG0705|consen 173 YGLNVERVFQEVAQKIVQLRKY 194 (749)
T ss_pred hhhhHHHHHHHHHHHHHHHHhh
Confidence 9999999999998888776543
No 323
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.20 E-value=1.9e-10 Score=90.81 Aligned_cols=119 Identities=11% Similarity=0.037 Sum_probs=72.0
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCCCCcc-cCceeeeeeEEEEECCeEEEEEEEeCCCCCcccc------c----ccc
Q psy4710 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVY-VPTVFENYVADIEVDSKQVELALWDTAGQEDYDR------L----RPL 72 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~------~----~~~ 72 (192)
..++|+++|.+|+||||++|.|++....... ....++.. ........+..+.++||||..+... . ...
T Consensus 117 fslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~-~ei~~~idG~~L~VIDTPGL~dt~~dq~~neeILk~Ik~ 195 (763)
T TIGR00993 117 FSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSV-QEIEGLVQGVKIRVIDTPGLKSSASDQSKNEKILSSVKK 195 (763)
T ss_pred cceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEE-EEEEEEECCceEEEEECCCCCccccchHHHHHHHHHHHH
Confidence 4689999999999999999999997643322 21222222 1111122346799999999654321 0 111
Q ss_pred cCC--CCCEEEEEEECCChhhhhchhhhhHHHHhhhCC---CCcEEEEeecccccCC
Q psy4710 73 SYP--DTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP---NVPIILVGNKKDLRND 124 (192)
Q Consensus 73 ~~~--~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~---~~p~ivv~nK~D~~~~ 124 (192)
++. ..|++|+|..+...... .....++..+...+. -..+|||+|+.|..++
T Consensus 196 ~Lsk~gpDVVLlV~RLd~~~~D-~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lpp 251 (763)
T TIGR00993 196 FIKKNPPDIVLYVDRLDMQTRD-SNDLPLLRTITDVLGPSIWFNAIVTLTHAASAPP 251 (763)
T ss_pred HHhcCCCCEEEEEEeCCCcccc-HHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCCC
Confidence 222 47999999877532211 111234454544332 3678999999999864
No 324
>KOG0468|consensus
Probab=99.17 E-value=1.3e-10 Score=90.88 Aligned_cols=115 Identities=18% Similarity=0.222 Sum_probs=81.8
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCce----------------eeeeeEE-----EEECCeEEEEEEEeCCC
Q psy4710 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV----------------FENYVAD-----IEVDSKQVELALWDTAG 62 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~----------------~~~~~~~-----~~~~~~~~~~~l~D~~g 62 (192)
+-.+|+++|+-++|||+|+..|.....++...... ....... -..+++.+-+.+.||||
T Consensus 127 ~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTPG 206 (971)
T KOG0468|consen 127 RIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTPG 206 (971)
T ss_pred eEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCCC
Confidence 46789999999999999999998765544321110 0000000 12245667899999999
Q ss_pred CCcccccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeeccccc
Q psy4710 63 QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLR 122 (192)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 122 (192)
|-.|.+.....++.+|++++++|+.+.-.+.-- .++...-. .+.|+++|+||+|..
T Consensus 207 HVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntE--r~ikhaiq--~~~~i~vviNKiDRL 262 (971)
T KOG0468|consen 207 HVNFSDETTASLRLSDGVVLVVDVAEGVMLNTE--RIIKHAIQ--NRLPIVVVINKVDRL 262 (971)
T ss_pred cccchHHHHHHhhhcceEEEEEEcccCceeeHH--HHHHHHHh--ccCcEEEEEehhHHH
Confidence 999999999999999999999999987544332 22222222 279999999999984
No 325
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=99.16 E-value=9.7e-10 Score=81.20 Aligned_cols=84 Identities=17% Similarity=0.108 Sum_probs=56.4
Q ss_pred ceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEE---------------E--ECCeEEEEEEEeCCCCCc--
Q psy4710 5 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADI---------------E--VDSKQVELALWDTAGQED-- 65 (192)
Q Consensus 5 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~---------------~--~~~~~~~~~l~D~~g~~~-- 65 (192)
.+++.|+|.||+|||||.|+++.......-.|..+......+ . .......+.++|++|.-.
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 578999999999999999999998754333333322221111 0 012335789999999332
Q ss_pred -----ccccccccCCCCCEEEEEEECCC
Q psy4710 66 -----YDRLRPLSYPDTDVILMCFSIDS 88 (192)
Q Consensus 66 -----~~~~~~~~~~~~~~~i~v~d~~~ 88 (192)
.....-..++.+|+++.|+++.+
T Consensus 82 s~GeGLGNkFL~~IRevdaI~hVVr~f~ 109 (372)
T COG0012 82 SKGEGLGNKFLDNIREVDAIIHVVRCFG 109 (372)
T ss_pred ccCCCcchHHHHhhhhcCeEEEEEEecC
Confidence 33333456788999999999974
No 326
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.15 E-value=2.3e-10 Score=81.11 Aligned_cols=69 Identities=20% Similarity=0.133 Sum_probs=43.2
Q ss_pred EEEEEEeCCCCCcc-------------cccccccCC-CCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeec
Q psy4710 53 VELALWDTAGQEDY-------------DRLRPLSYP-DTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNK 118 (192)
Q Consensus 53 ~~~~l~D~~g~~~~-------------~~~~~~~~~-~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK 118 (192)
..+.++|+||.... ..+...+++ ..+++++|+|+...-.-+.. ..+...+... +.|+++|+||
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~-l~ia~~ld~~--~~rti~ViTK 201 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDA-LKLAKEVDPQ--GERTIGVITK 201 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhH-HHHHHHHHHc--CCcEEEEEEC
Confidence 46899999996421 112233555 45689999988653221111 1344444443 7899999999
Q ss_pred ccccCC
Q psy4710 119 KDLRND 124 (192)
Q Consensus 119 ~D~~~~ 124 (192)
.|....
T Consensus 202 ~D~~~~ 207 (240)
T smart00053 202 LDLMDE 207 (240)
T ss_pred CCCCCc
Confidence 998763
No 327
>KOG2486|consensus
Probab=99.14 E-value=7.1e-11 Score=83.45 Aligned_cols=162 Identities=14% Similarity=0.100 Sum_probs=96.7
Q ss_pred ccceeEEEEcCCCCchhHHHHHHhhCCCCCcc-cCceeeeeeEEEEECCeEEEEEEEeCCC----------CCccccccc
Q psy4710 3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVY-VPTVFENYVADIEVDSKQVELALWDTAG----------QEDYDRLRP 71 (192)
Q Consensus 3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g----------~~~~~~~~~ 71 (192)
..+.++++.|.+|+|||||+|-++..+..... .+..+. ...+..-.-+-.+.++|.|| ..++.....
T Consensus 134 ~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~--Tq~in~f~v~~~~~~vDlPG~~~a~y~~~~~~d~~~~t~ 211 (320)
T KOG2486|consen 134 DKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGK--TQAINHFHVGKSWYEVDLPGYGRAGYGFELPADWDKFTK 211 (320)
T ss_pred CCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCcc--ceeeeeeeccceEEEEecCCcccccCCccCcchHhHhHH
Confidence 45789999999999999999999886643322 222222 22222333445789999999 112222222
Q ss_pred ccCC---CCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHH--HHH
Q psy4710 72 LSYP---DTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEE--GRA 146 (192)
Q Consensus 72 ~~~~---~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~--~~~ 146 (192)
.++. +---+.+++|++-+ ++..+...++.+.++ ++|+.+|+||+|.......-. .+...... .+.
T Consensus 212 ~Y~leR~nLv~~FLLvd~sv~--i~~~D~~~i~~~ge~--~VP~t~vfTK~DK~k~~~~~~------kKp~~~i~~~f~~ 281 (320)
T KOG2486|consen 212 SYLLERENLVRVFLLVDASVP--IQPTDNPEIAWLGEN--NVPMTSVFTKCDKQKKVKRTG------KKPGLNIKINFQG 281 (320)
T ss_pred HHHHhhhhhheeeeeeeccCC--CCCCChHHHHHHhhc--CCCeEEeeehhhhhhhccccc------cCccccceeehhh
Confidence 2222 23345566677655 666655677777777 899999999999875432100 00000000 011
Q ss_pred HHHH--cCCceEEEeccCCcCCHHHHHHHHHH
Q psy4710 147 MAQK--INAFAYLECSAKSKEGVREVFETATR 176 (192)
Q Consensus 147 ~~~~--~~~~~~~~~Sa~~~~gi~~~~~~i~~ 176 (192)
+.+. ....|.+.+|+.++.|+++++-.+.+
T Consensus 282 l~~~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q 313 (320)
T KOG2486|consen 282 LIRGVFLVDLPWIYVSSVTSLGRDLLLLHIAQ 313 (320)
T ss_pred ccccceeccCCceeeecccccCceeeeeehhh
Confidence 1111 11146778999999999998876654
No 328
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.13 E-value=3.4e-10 Score=78.25 Aligned_cols=95 Identities=23% Similarity=0.237 Sum_probs=64.1
Q ss_pred ccccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHH
Q psy4710 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGR 145 (192)
Q Consensus 66 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (192)
+...+...++.+|++++|+|++++.. .|...+.....+.|+++|+||+|+..... ......
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~------~~~~~l~~~~~~~~~ilV~NK~Dl~~~~~-------------~~~~~~ 84 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPG------SLIPRLRLFGGNNPVILVGNKIDLLPKDK-------------NLVRIK 84 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCC------ccchhHHHhcCCCcEEEEEEchhcCCCCC-------------CHHHHH
Confidence 46677788899999999999987531 12222222234789999999999865211 111222
Q ss_pred HHH-----HHcC--CceEEEeccCCcCCHHHHHHHHHHHHh
Q psy4710 146 AMA-----QKIN--AFAYLECSAKSKEGVREVFETATRAAL 179 (192)
Q Consensus 146 ~~~-----~~~~--~~~~~~~Sa~~~~gi~~~~~~i~~~~~ 179 (192)
.+. +..+ ..+++++||+++.|++++++.|.+.+.
T Consensus 85 ~~~~~~~~~~~~~~~~~i~~vSA~~~~gi~eL~~~l~~~l~ 125 (190)
T cd01855 85 NWLRAKAAAGLGLKPKDVILISAKKGWGVEELINAIKKLAK 125 (190)
T ss_pred HHHHHHHHhhcCCCcccEEEEECCCCCCHHHHHHHHHHHhh
Confidence 222 1222 126899999999999999999988764
No 329
>KOG0410|consensus
Probab=99.12 E-value=3.6e-11 Score=86.66 Aligned_cols=150 Identities=20% Similarity=0.262 Sum_probs=92.5
Q ss_pred eeEEEEcCCCCchhHHHHHHhhCCCCCc-ccCceeeeeeEEEEECCeEEEEEEEeCCCCCc---------ccccccccCC
Q psy4710 6 KKLVIVGDGACGKTCLLIVFSKDQFPEV-YVPTVFENYVADIEVDSKQVELALWDTAGQED---------YDRLRPLSYP 75 (192)
Q Consensus 6 ~~i~v~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~---------~~~~~~~~~~ 75 (192)
.-|.++|..|+|||||+++|.+...-.. ....+-+...+...... +..+.+.||-|.-+ |..... ...
T Consensus 179 pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lps-g~~vlltDTvGFisdLP~~LvaAF~ATLe-eVa 256 (410)
T KOG0410|consen 179 PVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPS-GNFVLLTDTVGFISDLPIQLVAAFQATLE-EVA 256 (410)
T ss_pred ceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCC-CcEEEEeechhhhhhCcHHHHHHHHHHHH-HHh
Confidence 4689999999999999999996553222 22222222222223333 34688999999422 222211 234
Q ss_pred CCCEEEEEEECCChhhhhchhhhhHHHHhhhC-CCCc----EEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHH
Q psy4710 76 DTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVP----IILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQK 150 (192)
Q Consensus 76 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p----~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (192)
.+|.++.|.|+++|+.-+.. +..+..++... +..| ++=|=||.|..+.... .+.
T Consensus 257 eadlllHvvDiShP~ae~q~-e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e--------------------~E~ 315 (410)
T KOG0410|consen 257 EADLLLHVVDISHPNAEEQR-ETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVE--------------------EEK 315 (410)
T ss_pred hcceEEEEeecCCccHHHHH-HHHHHHHHhcCCCcHHHHhHHHhhccccccccccCc--------------------ccc
Confidence 78999999999998643333 45555555542 2233 3445577776542110 111
Q ss_pred cCCceEEEeccCCcCCHHHHHHHHHHHHhhh
Q psy4710 151 INAFAYLECSAKSKEGVREVFETATRAALQV 181 (192)
Q Consensus 151 ~~~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~ 181 (192)
+ .-+.+|+++|+|++++.+.+-.+....
T Consensus 316 n---~~v~isaltgdgl~el~~a~~~kv~~~ 343 (410)
T KOG0410|consen 316 N---LDVGISALTGDGLEELLKAEETKVASE 343 (410)
T ss_pred C---CccccccccCccHHHHHHHHHHHhhhh
Confidence 1 247899999999999999987776554
No 330
>KOG0465|consensus
Probab=99.08 E-value=4.9e-10 Score=86.82 Aligned_cols=119 Identities=18% Similarity=0.071 Sum_probs=82.7
Q ss_pred ceeEEEEcCCCCchhHHHHHHhhCCC-----CCccc-C-----------ceeeeeeEEEEECCeEEEEEEEeCCCCCccc
Q psy4710 5 RKKLVIVGDGACGKTCLLIVFSKDQF-----PEVYV-P-----------TVFENYVADIEVDSKQVELALWDTAGQEDYD 67 (192)
Q Consensus 5 ~~~i~v~G~~~~GKSsli~~l~~~~~-----~~~~~-~-----------~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~ 67 (192)
--+|.+..+..|||||+-++.+...- .+... . .+.+..+....+...+..+.++|||||-+|.
T Consensus 39 ~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvDFT 118 (721)
T KOG0465|consen 39 IRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVDFT 118 (721)
T ss_pred hcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCceeEE
Confidence 45788999999999999999765221 11000 0 0111112223344557889999999999999
Q ss_pred ccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccc
Q psy4710 68 RLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNT 127 (192)
Q Consensus 68 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~ 127 (192)
-.....++-.|+++++++...+-.-+. ........++ ++|-+..+||+|....++.
T Consensus 119 ~EVeRALrVlDGaVlvl~aV~GVqsQt--~tV~rQ~~ry--~vP~i~FiNKmDRmGa~~~ 174 (721)
T KOG0465|consen 119 FEVERALRVLDGAVLVLDAVAGVESQT--ETVWRQMKRY--NVPRICFINKMDRMGASPF 174 (721)
T ss_pred EEehhhhhhccCeEEEEEcccceehhh--HHHHHHHHhc--CCCeEEEEehhhhcCCChH
Confidence 888889999999999999987633232 3444444555 8999999999999775553
No 331
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.04 E-value=1e-09 Score=82.04 Aligned_cols=82 Identities=18% Similarity=0.092 Sum_probs=53.1
Q ss_pred eeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeee-EEEEECCe---------------EEEEEEEeCCCCCccccc
Q psy4710 6 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYV-ADIEVDSK---------------QVELALWDTAGQEDYDRL 69 (192)
Q Consensus 6 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~---------------~~~~~l~D~~g~~~~~~~ 69 (192)
++|+++|.||+|||||+|+|.+........|.++.... -.+.+... ...+.++|+||...-.+.
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 78999999999999999999997743332233321111 11122221 135899999995432111
Q ss_pred -------ccccCCCCCEEEEEEECC
Q psy4710 70 -------RPLSYPDTDVILMCFSID 87 (192)
Q Consensus 70 -------~~~~~~~~~~~i~v~d~~ 87 (192)
....++.+|++++|+|+.
T Consensus 83 g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 83 GEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 122467899999999985
No 332
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=99.04 E-value=5.8e-10 Score=73.35 Aligned_cols=54 Identities=19% Similarity=0.199 Sum_probs=38.6
Q ss_pred eEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCC
Q psy4710 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQ 63 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~ 63 (192)
+++++|.+|+|||||+|++.+............+.....+.++. .+.+|||||.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIFLTP---TITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEEEeCC---CEEEEECCCc
Confidence 79999999999999999999887654433333333333333433 5799999994
No 333
>KOG1954|consensus
Probab=99.04 E-value=7e-10 Score=81.50 Aligned_cols=116 Identities=19% Similarity=0.301 Sum_probs=76.0
Q ss_pred ceeEEEEcCCCCchhHHHHHHhhCCCCCcccCc--eeeeeeEEEEECCeE------------------------------
Q psy4710 5 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPT--VFENYVADIEVDSKQ------------------------------ 52 (192)
Q Consensus 5 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~------------------------------ 52 (192)
..-|+++|+-+.|||||++.|+.+.++.....+ +++.+...+.-+.++
T Consensus 58 KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf~ 137 (532)
T KOG1954|consen 58 KPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRFM 137 (532)
T ss_pred CceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHHH
Confidence 456999999999999999999999987544222 222333322111111
Q ss_pred ---------EEEEEEeCCCCC-----------cccccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcE
Q psy4710 53 ---------VELALWDTAGQE-----------DYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPI 112 (192)
Q Consensus 53 ---------~~~~l~D~~g~~-----------~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ 112 (192)
-.++++||||.- +|......+...+|.++++||....+--.+. +..+..++.. .-.+
T Consensus 138 csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf-~~vi~aLkG~--Edki 214 (532)
T KOG1954|consen 138 CSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEF-KRVIDALKGH--EDKI 214 (532)
T ss_pred HhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHH-HHHHHHhhCC--ccee
Confidence 168999999932 2344456677889999999998654322222 2344444433 5678
Q ss_pred EEEeecccccC
Q psy4710 113 ILVGNKKDLRN 123 (192)
Q Consensus 113 ivv~nK~D~~~ 123 (192)
-||+||.|...
T Consensus 215 RVVLNKADqVd 225 (532)
T KOG1954|consen 215 RVVLNKADQVD 225 (532)
T ss_pred EEEeccccccC
Confidence 89999999876
No 334
>PRK00098 GTPase RsgA; Reviewed
Probab=99.04 E-value=1.1e-09 Score=80.64 Aligned_cols=88 Identities=25% Similarity=0.310 Sum_probs=63.8
Q ss_pred cCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcC
Q psy4710 73 SYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKIN 152 (192)
Q Consensus 73 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (192)
.+.++|.+++|+|+.++.......+.|+..+... ++|+++|+||+|+..... .........+.++
T Consensus 77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~~--~ip~iIVlNK~DL~~~~~-------------~~~~~~~~~~~~g 141 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEAN--GIKPIIVLNKIDLLDDLE-------------EARELLALYRAIG 141 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHHC--CCCEEEEEEhHHcCCCHH-------------HHHHHHHHHHHCC
Confidence 3579999999999988766555545676665543 799999999999863210 1112233344455
Q ss_pred CceEEEeccCCcCCHHHHHHHHHH
Q psy4710 153 AFAYLECSAKSKEGVREVFETATR 176 (192)
Q Consensus 153 ~~~~~~~Sa~~~~gi~~~~~~i~~ 176 (192)
++++++||+++.|++++++.+..
T Consensus 142 -~~v~~vSA~~g~gi~~L~~~l~g 164 (298)
T PRK00098 142 -YDVLELSAKEGEGLDELKPLLAG 164 (298)
T ss_pred -CeEEEEeCCCCccHHHHHhhccC
Confidence 58999999999999999988753
No 335
>KOG0085|consensus
Probab=99.03 E-value=6.7e-11 Score=81.60 Aligned_cols=136 Identities=20% Similarity=0.201 Sum_probs=89.8
Q ss_pred ECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEEEECCChhhhh------chhhhhHHHHh-----hhCCCCcEEEEe
Q psy4710 48 VDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLE------NIPEKWTPEVK-----HFCPNVPIILVG 116 (192)
Q Consensus 48 ~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~------~~~~~~~~~~~-----~~~~~~p~ivv~ 116 (192)
++...+.+.+.|.+|+..-+..|.+++++...+++++..+..+..- +-.+.-..+++ .++.+.++|+.+
T Consensus 194 fdl~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF~nssVIlFL 273 (359)
T KOG0085|consen 194 FDLQKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFL 273 (359)
T ss_pred cchhhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccccCCceEEEe
Confidence 3445667889999999999999999999988888887776643211 10111111222 356799999999
Q ss_pred ecccccCCccchhhhhhccCCCC----CHHHHHHHHH-----HcCC----ceEEEeccCCcCCHHHHHHHHHHHHhhhcc
Q psy4710 117 NKKDLRNDPNTIKELNKMKQEPV----KPEEGRAMAQ-----KINA----FAYLECSAKSKEGVREVFETATRAALQVKK 183 (192)
Q Consensus 117 nK~D~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~-----~~~~----~~~~~~Sa~~~~gi~~~~~~i~~~~~~~~~ 183 (192)
||.|+.++.....++....++.. ..+.+++|.- ..+. +.-..+.|.+.+||.-+|..+...+....-
T Consensus 274 NKkDlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaVkDtiLq~~L 353 (359)
T KOG0085|consen 274 NKKDLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLNL 353 (359)
T ss_pred chhhhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHHHHHHHHhhh
Confidence 99999988777666544333322 2333444432 1211 112358899999999999999888876543
No 336
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=99.02 E-value=6.7e-10 Score=74.33 Aligned_cols=94 Identities=21% Similarity=0.209 Sum_probs=62.4
Q ss_pred ccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHH
Q psy4710 68 RLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAM 147 (192)
Q Consensus 68 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (192)
....+..+++|++++|+|++++..... ..+...+.. .+.|+++|+||+|+..... ......+
T Consensus 4 ~~~~~i~~~aD~vl~V~D~~~~~~~~~--~~l~~~~~~--~~~p~iiv~NK~Dl~~~~~--------------~~~~~~~ 65 (156)
T cd01859 4 RLVRRIIKESDVVLEVLDARDPELTRS--RKLERYVLE--LGKKLLIVLNKADLVPKEV--------------LEKWKSI 65 (156)
T ss_pred HHHHHHHhhCCEEEEEeeCCCCcccCC--HHHHHHHHh--CCCcEEEEEEhHHhCCHHH--------------HHHHHHH
Confidence 445566778999999999987643222 123333322 2689999999999853110 0111122
Q ss_pred HHHcCCceEEEeccCCcCCHHHHHHHHHHHHhh
Q psy4710 148 AQKINAFAYLECSAKSKEGVREVFETATRAALQ 180 (192)
Q Consensus 148 ~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~~~~ 180 (192)
....+ .+++.+||+++.|++++++.+.+.+..
T Consensus 66 ~~~~~-~~~~~iSa~~~~gi~~L~~~l~~~~~~ 97 (156)
T cd01859 66 KESEG-IPVVYVSAKERLGTKILRRTIKELAKI 97 (156)
T ss_pred HHhCC-CcEEEEEccccccHHHHHHHHHHHHhh
Confidence 23333 578999999999999999999887653
No 337
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=99.02 E-value=5.8e-09 Score=76.75 Aligned_cols=120 Identities=20% Similarity=0.240 Sum_probs=74.9
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCCCCcc----------cCceeeee-eEEEEECCeEEEEEEEeCCCCCcccc---c
Q psy4710 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVY----------VPTVFENY-VADIEVDSKQVELALWDTAGQEDYDR---L 69 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~----------~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~---~ 69 (192)
..++|+++|+.|+|||||+|.|++....... .++..... ...+.-++-...+.++||||.-++-. .
T Consensus 22 i~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~~ 101 (373)
T COG5019 22 IDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSKC 101 (373)
T ss_pred CceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCcccccccccc
Confidence 4789999999999999999999987433321 11111111 12233356677899999999222110 0
Q ss_pred c----------------------cc-cC--CCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCC
Q psy4710 70 R----------------------PL-SY--PDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRND 124 (192)
Q Consensus 70 ~----------------------~~-~~--~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 124 (192)
| +. .+ ...|++|+.+..+. ..+..++=..+..+. +.+.+|=|+.|+|....
T Consensus 102 we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptg-h~l~~~DIe~Mk~ls---~~vNlIPVI~KaD~lT~ 177 (373)
T COG5019 102 WEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTG-HGLKPLDIEAMKRLS---KRVNLIPVIAKADTLTD 177 (373)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCC-CCCCHHHHHHHHHHh---cccCeeeeeeccccCCH
Confidence 0 00 11 23788888887664 445555433444444 46899999999999876
Q ss_pred ccc
Q psy4710 125 PNT 127 (192)
Q Consensus 125 ~~~ 127 (192)
.+.
T Consensus 178 ~El 180 (373)
T COG5019 178 DEL 180 (373)
T ss_pred HHH
Confidence 554
No 338
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.02 E-value=8.8e-10 Score=79.73 Aligned_cols=80 Identities=19% Similarity=0.113 Sum_probs=51.2
Q ss_pred EEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEECCe---------------EEEEEEEeCCCCCccccc--
Q psy4710 8 LVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSK---------------QVELALWDTAGQEDYDRL-- 69 (192)
Q Consensus 8 i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~---------------~~~~~l~D~~g~~~~~~~-- 69 (192)
|+++|.||+|||||+|+|++........|.++... .-.+.+.+. ...+.++|+||...-.+.
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 57999999999999999999876443333333111 112222221 235899999995432111
Q ss_pred -----ccccCCCCCEEEEEEECC
Q psy4710 70 -----RPLSYPDTDVILMCFSID 87 (192)
Q Consensus 70 -----~~~~~~~~~~~i~v~d~~ 87 (192)
....++.+|++++|+|+.
T Consensus 81 glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCc
Confidence 122356899999999975
No 339
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.99 E-value=1.4e-09 Score=73.66 Aligned_cols=55 Identities=18% Similarity=0.283 Sum_probs=38.5
Q ss_pred ceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCC
Q psy4710 5 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAG 62 (192)
Q Consensus 5 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g 62 (192)
.++++++|.||+|||||+|++.+.........++.+.....+... ..+.++||||
T Consensus 117 ~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~~~~~~---~~~~l~DtPG 171 (172)
T cd04178 117 SITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQEVHLD---KKVKLLDSPG 171 (172)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceEEEEeC---CCEEEEECcC
Confidence 479999999999999999999987654433333333323333332 2588999999
No 340
>KOG1547|consensus
Probab=98.99 E-value=1.2e-08 Score=70.98 Aligned_cols=116 Identities=21% Similarity=0.270 Sum_probs=73.7
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCCCCcc--------cCceeee--eeEEEEECCeEEEEEEEeCCCCCcc---cccc
Q psy4710 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVY--------VPTVFEN--YVADIEVDSKQVELALWDTAGQEDY---DRLR 70 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~--------~~~~~~~--~~~~~~~~~~~~~~~l~D~~g~~~~---~~~~ 70 (192)
..++|.|+|.+|.||||++|.++.....+.. .+.+... ..+.+.-++-..++.++||||.-++ ...|
T Consensus 45 F~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ncW 124 (336)
T KOG1547|consen 45 FDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCW 124 (336)
T ss_pred CceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccchh
Confidence 5799999999999999999999875543311 1112211 1233344566678999999993221 1111
Q ss_pred -----------------------cccCC--CCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccC
Q psy4710 71 -----------------------PLSYP--DTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN 123 (192)
Q Consensus 71 -----------------------~~~~~--~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 123 (192)
...+. ..+++++.+..+. .++..++-.++..+.+ -..++=|+-|.|...
T Consensus 125 ePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptG-hsLrplDieflkrLt~---vvNvvPVIakaDtlT 198 (336)
T KOG1547|consen 125 EPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTG-HSLRPLDIEFLKRLTE---VVNVVPVIAKADTLT 198 (336)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCC-CccCcccHHHHHHHhh---hheeeeeEeeccccc
Confidence 11222 3677888776664 5676665445555544 578888999999765
No 341
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.99 E-value=1.6e-09 Score=72.64 Aligned_cols=56 Identities=14% Similarity=0.115 Sum_probs=37.6
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCC
Q psy4710 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAG 62 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g 62 (192)
..++|+++|.+|+|||||+|+|.+.........++++.....+.... .+.++||||
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~~~~~~~---~~~liDtPG 156 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQYITLMK---RIYLIDCPG 156 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEEEEEcCC---CEEEEECcC
Confidence 36789999999999999999999876544333233332222222221 378999999
No 342
>KOG0460|consensus
Probab=98.99 E-value=2.4e-09 Score=77.94 Aligned_cols=168 Identities=17% Similarity=0.188 Sum_probs=105.1
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCC----------C------CCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCccc
Q psy4710 4 IRKKLVIVGDGACGKTCLLIVFSKDQ----------F------PEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYD 67 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~----------~------~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~ 67 (192)
.+++|.-+|+..-|||||-.++..-. + ++.....+ +.....+.++-.....--.|+|||.+|-
T Consensus 53 PHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGI-TIn~aHveYeTa~RhYaH~DCPGHADYI 131 (449)
T KOG0460|consen 53 PHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGI-TINAAHVEYETAKRHYAHTDCPGHADYI 131 (449)
T ss_pred CcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccc-eEeeeeeeeeccccccccCCCCchHHHH
Confidence 46899999999999999998876511 1 11111111 1112233444445556778999999998
Q ss_pred ccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHH
Q psy4710 68 RLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAM 147 (192)
Q Consensus 68 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (192)
.....-..+.|++|+|+.++|..--+.- +.++ +.+. ..-..+++.+||.|+.++.+..+.. .-+.+++
T Consensus 132 KNMItGaaqMDGaILVVaatDG~MPQTr-EHlL-LArQ-VGV~~ivvfiNKvD~V~d~e~leLV---------EmE~REl 199 (449)
T KOG0460|consen 132 KNMITGAAQMDGAILVVAATDGPMPQTR-EHLL-LARQ-VGVKHIVVFINKVDLVDDPEMLELV---------EMEIREL 199 (449)
T ss_pred HHhhcCccccCceEEEEEcCCCCCcchH-HHHH-HHHH-cCCceEEEEEecccccCCHHHHHHH---------HHHHHHH
Confidence 8777777789999999999996432221 2221 2222 1135678999999998765533322 3345566
Q ss_pred HHHcC----CceEEEeccC---CcC-------CHHHHHHHHHHHHhhhccc
Q psy4710 148 AQKIN----AFAYLECSAK---SKE-------GVREVFETATRAALQVKKK 184 (192)
Q Consensus 148 ~~~~~----~~~~~~~Sa~---~~~-------gi~~~~~~i~~~~~~~~~~ 184 (192)
...++ ..|++.-||+ ++. .|.+|++.+-..+..+.+.
T Consensus 200 Lse~gf~Gd~~PvI~GSAL~ALeg~~peig~~aI~kLldavDsyip~P~R~ 250 (449)
T KOG0460|consen 200 LSEFGFDGDNTPVIRGSALCALEGRQPEIGLEAIEKLLDAVDSYIPTPERD 250 (449)
T ss_pred HHHcCCCCCCCCeeecchhhhhcCCCccccHHHHHHHHHHHhccCCCcccc
Confidence 55554 2688876654 442 2667777777666666554
No 343
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.94 E-value=5.7e-09 Score=69.90 Aligned_cols=91 Identities=14% Similarity=0.092 Sum_probs=60.1
Q ss_pred cCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcC
Q psy4710 73 SYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKIN 152 (192)
Q Consensus 73 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (192)
.++.+|.+++|+|+.++..- ....+...+.....+.|+++|+||+|+.+... .......+.+.+.
T Consensus 5 ~l~~aD~il~VvD~~~p~~~--~~~~i~~~l~~~~~~~p~ilVlNKiDl~~~~~-------------~~~~~~~~~~~~~ 69 (157)
T cd01858 5 VIDSSDVVIQVLDARDPMGT--RCKHVEEYLKKEKPHKHLIFVLNKCDLVPTWV-------------TARWVKILSKEYP 69 (157)
T ss_pred hhhhCCEEEEEEECCCCccc--cCHHHHHHHHhccCCCCEEEEEEchhcCCHHH-------------HHHHHHHHhcCCc
Confidence 45789999999999986322 22344455544334689999999999964210 1122223333222
Q ss_pred CceEEEeccCCcCCHHHHHHHHHHHHh
Q psy4710 153 AFAYLECSAKSKEGVREVFETATRAAL 179 (192)
Q Consensus 153 ~~~~~~~Sa~~~~gi~~~~~~i~~~~~ 179 (192)
+..+.+||+++.|++++++.+...+.
T Consensus 70 -~~~~~iSa~~~~~~~~L~~~l~~~~~ 95 (157)
T cd01858 70 -TIAFHASINNPFGKGSLIQLLRQFSK 95 (157)
T ss_pred -EEEEEeeccccccHHHHHHHHHHHHh
Confidence 23578999999999999999977643
No 344
>KOG2655|consensus
Probab=98.93 E-value=4.3e-08 Score=72.70 Aligned_cols=119 Identities=19% Similarity=0.236 Sum_probs=73.2
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCCCCcc--------cCceeeeee--EEEEECCeEEEEEEEeCCCCCccc------
Q psy4710 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVY--------VPTVFENYV--ADIEVDSKQVELALWDTAGQEDYD------ 67 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~--------~~~~~~~~~--~~~~~~~~~~~~~l~D~~g~~~~~------ 67 (192)
..+.++++|+.|.|||||+|.|+...+.... ...+..... ..+.-++-.+.++++||||.-+.-
T Consensus 20 ~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w 99 (366)
T KOG2655|consen 20 FDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCW 99 (366)
T ss_pred CceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccc
Confidence 3589999999999999999998876443321 111111111 122334566789999999922210
Q ss_pred -------------------ccccccCC--CCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCcc
Q psy4710 68 -------------------RLRPLSYP--DTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPN 126 (192)
Q Consensus 68 -------------------~~~~~~~~--~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~ 126 (192)
...+..+. ..+++++.+..+. ..+..++-.++..+. ..+++|=|+.|+|.....+
T Consensus 100 ~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~g-hgL~p~Di~~Mk~l~---~~vNiIPVI~KaD~lT~~E 175 (366)
T KOG2655|consen 100 RPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTG-HGLKPLDIEFMKKLS---KKVNLIPVIAKADTLTKDE 175 (366)
T ss_pred hhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCC-CCCcHhhHHHHHHHh---ccccccceeeccccCCHHH
Confidence 01111222 4788888887664 345554434444444 4788999999999877544
No 345
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.91 E-value=5.7e-09 Score=78.92 Aligned_cols=96 Identities=25% Similarity=0.362 Sum_probs=68.4
Q ss_pred CCcccccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHH
Q psy4710 63 QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPE 142 (192)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 142 (192)
.++|........+.++++++|+|+.+.. ..|...+.+...+.|+++|+||+|+.+.. ...+
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~------~s~~~~l~~~~~~~piilV~NK~DLl~k~-------------~~~~ 110 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFE------GSLIPELKRFVGGNPVLLVGNKIDLLPKS-------------VNLS 110 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCC------CCccHHHHHHhCCCCEEEEEEchhhCCCC-------------CCHH
Confidence 4567777777788999999999987642 24555555555578999999999996521 1122
Q ss_pred HH----HHHHHHcCC--ceEEEeccCCcCCHHHHHHHHHHH
Q psy4710 143 EG----RAMAQKINA--FAYLECSAKSKEGVREVFETATRA 177 (192)
Q Consensus 143 ~~----~~~~~~~~~--~~~~~~Sa~~~~gi~~~~~~i~~~ 177 (192)
.. .++++..+. ..++.+||+++.|++++++.+.+.
T Consensus 111 ~~~~~l~~~~k~~g~~~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 111 KIKEWMKKRAKELGLKPVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred HHHHHHHHHHHHcCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence 22 233444442 148899999999999999998764
No 346
>PRK12289 GTPase RsgA; Reviewed
Probab=98.91 E-value=8.6e-09 Score=77.31 Aligned_cols=89 Identities=18% Similarity=0.279 Sum_probs=61.3
Q ss_pred cccCCCCCEEEEEEECCChh-hhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHH
Q psy4710 71 PLSYPDTDVILMCFSIDSPD-SLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQ 149 (192)
Q Consensus 71 ~~~~~~~~~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (192)
...+.++|.+++|+|+.++. ....+ ..|+..... .+.|+++|+||+|+..... .........
T Consensus 84 R~~~aNvD~vLlV~d~~~p~~~~~~L-dR~L~~a~~--~~ip~ILVlNK~DLv~~~~--------------~~~~~~~~~ 146 (352)
T PRK12289 84 RPPVANADQILLVFALAEPPLDPWQL-SRFLVKAES--TGLEIVLCLNKADLVSPTE--------------QQQWQDRLQ 146 (352)
T ss_pred chhhhcCCEEEEEEECCCCCCCHHHH-HHHHHHHHH--CCCCEEEEEEchhcCChHH--------------HHHHHHHHH
Confidence 34578999999999998765 22233 355544433 4899999999999964210 011122223
Q ss_pred HcCCceEEEeccCCcCCHHHHHHHHHHH
Q psy4710 150 KINAFAYLECSAKSKEGVREVFETATRA 177 (192)
Q Consensus 150 ~~~~~~~~~~Sa~~~~gi~~~~~~i~~~ 177 (192)
.++ ++++.+||+++.|++++++.+...
T Consensus 147 ~~g-~~v~~iSA~tg~GI~eL~~~L~~k 173 (352)
T PRK12289 147 QWG-YQPLFISVETGIGLEALLEQLRNK 173 (352)
T ss_pred hcC-CeEEEEEcCCCCCHHHHhhhhccc
Confidence 445 588999999999999999988654
No 347
>KOG1487|consensus
Probab=98.90 E-value=1.2e-08 Score=71.83 Aligned_cols=85 Identities=15% Similarity=0.108 Sum_probs=59.6
Q ss_pred eeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCc-------ccccccccCCCCC
Q psy4710 6 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQED-------YDRLRPLSYPDTD 78 (192)
Q Consensus 6 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-------~~~~~~~~~~~~~ 78 (192)
-+|.++|-|.+||||++..+.+...+......++.. ..+-...+++.++++.|.||.-+ -..+.....+.++
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~-~vpG~~~y~gaKiqlldlpgiiegakdgkgrg~qviavartcn 138 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLT-TVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRGKQVIAVARTCN 138 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCCCccccccceeEE-EecceEeccccceeeecCcchhcccccCCCCccEEEEEeeccc
Confidence 378999999999999999999876554433222222 22223456778899999999322 2234455677899
Q ss_pred EEEEEEECCChhh
Q psy4710 79 VILMCFSIDSPDS 91 (192)
Q Consensus 79 ~~i~v~d~~~~~~ 91 (192)
.+++|+|+-.+-+
T Consensus 139 li~~vld~~kp~~ 151 (358)
T KOG1487|consen 139 LIFIVLDVLKPLS 151 (358)
T ss_pred EEEEEeeccCccc
Confidence 9999999987644
No 348
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.89 E-value=8.2e-09 Score=75.75 Aligned_cols=88 Identities=20% Similarity=0.276 Sum_probs=63.8
Q ss_pred cccCCCCCEEEEEEECCChh-hhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHH
Q psy4710 71 PLSYPDTDVILMCFSIDSPD-SLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQ 149 (192)
Q Consensus 71 ~~~~~~~~~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (192)
+..+.++|.+++|+|+.++. ++..+. .|+..+... ++|+++|+||+|+.+... .........
T Consensus 73 ~~i~anvD~vllV~d~~~p~~s~~~ld-r~L~~~~~~--~ip~iIVlNK~DL~~~~~--------------~~~~~~~~~ 135 (287)
T cd01854 73 QVIAANVDQLVIVVSLNEPFFNPRLLD-RYLVAAEAA--GIEPVIVLTKADLLDDEE--------------EELELVEAL 135 (287)
T ss_pred eeEEEeCCEEEEEEEcCCCCCCHHHHH-HHHHHHHHc--CCCEEEEEEHHHCCChHH--------------HHHHHHHHH
Confidence 34577899999999999886 666653 566655543 799999999999865210 111222233
Q ss_pred HcCCceEEEeccCCcCCHHHHHHHHHH
Q psy4710 150 KINAFAYLECSAKSKEGVREVFETATR 176 (192)
Q Consensus 150 ~~~~~~~~~~Sa~~~~gi~~~~~~i~~ 176 (192)
..+ ++++.+||+++.|+++++..+..
T Consensus 136 ~~g-~~v~~vSA~~g~gi~~L~~~L~~ 161 (287)
T cd01854 136 ALG-YPVLAVSAKTGEGLDELREYLKG 161 (287)
T ss_pred hCC-CeEEEEECCCCccHHHHHhhhcc
Confidence 344 68999999999999999988764
No 349
>KOG0099|consensus
Probab=98.89 E-value=4e-09 Score=74.17 Aligned_cols=133 Identities=18% Similarity=0.272 Sum_probs=81.1
Q ss_pred ECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEEEECCChhh----------hh----chhhhhHHHHhhhCCCCcEE
Q psy4710 48 VDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDS----------LE----NIPEKWTPEVKHFCPNVPII 113 (192)
Q Consensus 48 ~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~----------~~----~~~~~~~~~~~~~~~~~p~i 113 (192)
+....+.++.+|.+|+.+-+..|..++....++|+|+..+..+- ++ -....|.. ++...+.+|
T Consensus 197 FqVdkv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnN---RwL~tisvI 273 (379)
T KOG0099|consen 197 FQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNN---RWLRTISVI 273 (379)
T ss_pred EeccccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhh---hHHhhhhee
Confidence 33445679999999999999999999999999999998876421 11 11112222 233478999
Q ss_pred EEeecccccCCccchhhh---------------hhccCCCC-----------CHHHHHHHHH-----HcCCceEEEeccC
Q psy4710 114 LVGNKKDLRNDPNTIKEL---------------NKMKQEPV-----------KPEEGRAMAQ-----KINAFAYLECSAK 162 (192)
Q Consensus 114 vv~nK~D~~~~~~~~~~~---------------~~~~~~~~-----------~~~~~~~~~~-----~~~~~~~~~~Sa~ 162 (192)
+.+||.|+.......... ++...+.- ...+-.+... ...++| .++.|.
T Consensus 274 lFLNKqDllaeKi~Agk~~i~dyFpEf~~y~~p~da~~es~~d~~v~raK~fird~FlRiSta~~Dg~h~CYp-HFTcAv 352 (379)
T KOG0099|consen 274 LFLNKQDLLAEKILAGKSKIEDYFPEFARYTTPEDATPESGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYP-HFTCAV 352 (379)
T ss_pred EEecHHHHHHHHHHcchhhHHHhChHHhccCCccccCCCCCCChhhHHHHHhhhhhHhhhccccCCCceeccc-ceeEee
Confidence 999999996533322110 00000000 0000001111 112233 458889
Q ss_pred CcCCHHHHHHHHHHHHhhhccc
Q psy4710 163 SKEGVREVFETATRAALQVKKK 184 (192)
Q Consensus 163 ~~~gi~~~~~~i~~~~~~~~~~ 184 (192)
+.++|..+|+...+.+...+-+
T Consensus 353 DTenIrrVFnDcrdiIqr~hlr 374 (379)
T KOG0099|consen 353 DTENIRRVFNDCRDIIQRMHLR 374 (379)
T ss_pred chHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999988877766543
No 350
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.88 E-value=6.6e-09 Score=70.59 Aligned_cols=57 Identities=19% Similarity=0.191 Sum_probs=39.2
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCC
Q psy4710 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQ 63 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~ 63 (192)
..++++++|.+|+|||||+|++.+..+........++.....+.++ ..+.+|||||.
T Consensus 114 ~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~~~~~---~~~~~iDtpG~ 170 (171)
T cd01856 114 RGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQWIKIS---PGIYLLDTPGI 170 (171)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEEEEec---CCEEEEECCCC
Confidence 4579999999999999999999987764332222222223333333 35789999994
No 351
>KOG0448|consensus
Probab=98.86 E-value=1.2e-08 Score=80.32 Aligned_cols=120 Identities=14% Similarity=0.197 Sum_probs=72.7
Q ss_pred ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEE-------------------------------------
Q psy4710 3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVAD------------------------------------- 45 (192)
Q Consensus 3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~------------------------------------- 45 (192)
....||++.|..++||||++|+++..+.-.......+..+...
T Consensus 107 r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~ 186 (749)
T KOG0448|consen 107 RRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDL 186 (749)
T ss_pred hcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCccccc
Confidence 4678999999999999999999987654332222211111110
Q ss_pred -------EEECCeE-----EEEEEEeCCCCCc---ccccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCC
Q psy4710 46 -------IEVDSKQ-----VELALWDTAGQED---YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNV 110 (192)
Q Consensus 46 -------~~~~~~~-----~~~~l~D~~g~~~---~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (192)
+..+.+. -.+.++|.||-+. ..+-...++..+|++|+|.++.+.....+ ..++....+. ..
T Consensus 187 ~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~se--k~Ff~~vs~~--Kp 262 (749)
T KOG0448|consen 187 GAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSE--KQFFHKVSEE--KP 262 (749)
T ss_pred CcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHH--HHHHHHhhcc--CC
Confidence 0011110 1467889999543 33334457779999999999887644433 3444444443 34
Q ss_pred cEEEEeecccccCCcc
Q psy4710 111 PIILVGNKKDLRNDPN 126 (192)
Q Consensus 111 p~ivv~nK~D~~~~~~ 126 (192)
.+.|+.||.|...+.+
T Consensus 263 niFIlnnkwDasase~ 278 (749)
T KOG0448|consen 263 NIFILNNKWDASASEP 278 (749)
T ss_pred cEEEEechhhhhcccH
Confidence 4556667779876533
No 352
>KOG0464|consensus
Probab=98.85 E-value=5.4e-10 Score=83.37 Aligned_cols=115 Identities=17% Similarity=0.118 Sum_probs=86.9
Q ss_pred eeEEEEcCCCCchhHHHHHHhhCC--------CCCcc---------cCceeeeeeEEEEECCeEEEEEEEeCCCCCcccc
Q psy4710 6 KKLVIVGDGACGKTCLLIVFSKDQ--------FPEVY---------VPTVFENYVADIEVDSKQVELALWDTAGQEDYDR 68 (192)
Q Consensus 6 ~~i~v~G~~~~GKSsli~~l~~~~--------~~~~~---------~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~ 68 (192)
.+|.++.+..+||||...+++.-. ..+.. ...+.+..+..+.++.++.++.++||||+.+|+-
T Consensus 38 rnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf~l 117 (753)
T KOG0464|consen 38 RNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDFRL 117 (753)
T ss_pred hcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceEEE
Confidence 478999999999999999987521 11111 0112233345567888999999999999999999
Q ss_pred cccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCC
Q psy4710 69 LRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRND 124 (192)
Q Consensus 69 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 124 (192)
....+++-.|+++.|+|.+.+-.-+.+ ..|.+.-+. ++|.+.++||+|...+
T Consensus 118 everclrvldgavav~dasagve~qtl-tvwrqadk~---~ip~~~finkmdk~~a 169 (753)
T KOG0464|consen 118 EVERCLRVLDGAVAVFDASAGVEAQTL-TVWRQADKF---KIPAHCFINKMDKLAA 169 (753)
T ss_pred EHHHHHHHhcCeEEEEeccCCccccee-eeehhcccc---CCchhhhhhhhhhhhh
Confidence 999999999999999999987555555 256554333 7999999999998653
No 353
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.85 E-value=1e-08 Score=74.85 Aligned_cols=57 Identities=23% Similarity=0.201 Sum_probs=39.7
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCC
Q psy4710 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQ 63 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~ 63 (192)
..++++++|.||+|||||+|+|.+.........+..+.....+.... .+.++||||.
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~~~---~~~l~DtPG~ 173 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQWIKLSD---GLELLDTPGI 173 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceEEEEeCC---CEEEEECCCc
Confidence 46889999999999999999999876544433333333333333322 4789999996
No 354
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.83 E-value=1.5e-08 Score=74.35 Aligned_cols=57 Identities=19% Similarity=0.182 Sum_probs=39.2
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCC
Q psy4710 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQ 63 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~ 63 (192)
..++++++|.||+|||||+|+|.+.........++.+.....+... ..+.++||||-
T Consensus 120 ~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~~---~~~~l~DtPGi 176 (287)
T PRK09563 120 RAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQWIKLG---KGLELLDTPGI 176 (287)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEEEEEeC---CcEEEEECCCc
Confidence 4578999999999999999999987754433222222222222322 24789999996
No 355
>PRK12288 GTPase RsgA; Reviewed
Probab=98.81 E-value=2e-08 Score=75.27 Aligned_cols=90 Identities=21% Similarity=0.237 Sum_probs=62.8
Q ss_pred CCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCC
Q psy4710 74 YPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINA 153 (192)
Q Consensus 74 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (192)
..++|.+++|++.....++..+. .|+..... .++|.++|+||+|+...... ..........+..+
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ld-r~L~~a~~--~~i~~VIVlNK~DL~~~~~~-----------~~~~~~~~~y~~~g- 182 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIID-RYLVACET--LGIEPLIVLNKIDLLDDEGR-----------AFVNEQLDIYRNIG- 182 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHH-HHHHHHHh--cCCCEEEEEECccCCCcHHH-----------HHHHHHHHHHHhCC-
Confidence 34689999999987766777764 66655543 37999999999999653110 00111122233445
Q ss_pred ceEEEeccCCcCCHHHHHHHHHHHH
Q psy4710 154 FAYLECSAKSKEGVREVFETATRAA 178 (192)
Q Consensus 154 ~~~~~~Sa~~~~gi~~~~~~i~~~~ 178 (192)
++++++||++++|++++++.+...+
T Consensus 183 ~~v~~vSA~tg~GideL~~~L~~ki 207 (347)
T PRK12288 183 YRVLMVSSHTGEGLEELEAALTGRI 207 (347)
T ss_pred CeEEEEeCCCCcCHHHHHHHHhhCC
Confidence 5899999999999999999987643
No 356
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.80 E-value=1.3e-08 Score=75.79 Aligned_cols=58 Identities=19% Similarity=0.196 Sum_probs=42.6
Q ss_pred ccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCC
Q psy4710 3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQ 63 (192)
Q Consensus 3 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~ 63 (192)
...++++|+|-||+|||||+|+|.+.........++.+.....+..... +.++||||-
T Consensus 130 ~~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~i~~~~~---i~LlDtPGi 187 (322)
T COG1161 130 KRKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQWIKLDDG---IYLLDTPGI 187 (322)
T ss_pred ccceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceEEEEcCCC---eEEecCCCc
Confidence 3458899999999999999999999887555444444444444444433 899999993
No 357
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.78 E-value=1.4e-08 Score=70.25 Aligned_cols=55 Identities=20% Similarity=0.217 Sum_probs=36.3
Q ss_pred ceeEEEEcCCCCchhHHHHHHhhCCCCC--------cccCceeeeeeEEEEECCeEEEEEEEeCCC
Q psy4710 5 RKKLVIVGDGACGKTCLLIVFSKDQFPE--------VYVPTVFENYVADIEVDSKQVELALWDTAG 62 (192)
Q Consensus 5 ~~~i~v~G~~~~GKSsli~~l~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g 62 (192)
+.+++++|.+|+|||||+|+|.+..... ....++++.....+.+.. .+.++||||
T Consensus 127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~---~~~~~DtPG 189 (190)
T cd01855 127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN---GKKLYDTPG 189 (190)
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCC---CCEEEeCcC
Confidence 4689999999999999999999854311 111122333233333332 479999999
No 358
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.76 E-value=3.2e-08 Score=66.19 Aligned_cols=55 Identities=18% Similarity=0.251 Sum_probs=36.3
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEE-EEECCeEEEEEEEeCCC
Q psy4710 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVAD-IEVDSKQVELALWDTAG 62 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~D~~g 62 (192)
...+++++|.+|+||||++|++.+...... .+..+.+.... +..+ ..+.+|||||
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~~~~-~~~~~~t~~~~~~~~~---~~~~~~DtpG 155 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRHSAST-SPSPGYTKGEQLVKIT---SKIYLLDTPG 155 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCcccc-CCCCCeeeeeEEEEcC---CCEEEEECcC
Confidence 467899999999999999999997653332 22222222222 1122 2689999999
No 359
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.76 E-value=2.4e-08 Score=66.76 Aligned_cols=56 Identities=16% Similarity=0.180 Sum_probs=37.2
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCC
Q psy4710 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAG 62 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g 62 (192)
...+++++|.+|+|||||+|++.+...........++.....+... ..+.++||||
T Consensus 99 ~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~~~~---~~~~liDtPG 154 (155)
T cd01849 99 KSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEVKLD---NKIKLLDTPG 154 (155)
T ss_pred cCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEEEEec---CCEEEEECCC
Confidence 4578999999999999999999986643222212222222222222 3589999999
No 360
>KOG0466|consensus
Probab=98.75 E-value=5.4e-09 Score=75.14 Aligned_cols=118 Identities=16% Similarity=0.128 Sum_probs=77.5
Q ss_pred EEEEEeCCCCCcccccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhh
Q psy4710 54 ELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNK 133 (192)
Q Consensus 54 ~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 133 (192)
.+.++|+|||+-.-....+-..-+|++++++..+.........+. +..+.-. .-+.++++-||+|+..+....++.
T Consensus 126 HVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEH-LaaveiM-~LkhiiilQNKiDli~e~~A~eq~-- 201 (466)
T KOG0466|consen 126 HVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEH-LAAVEIM-KLKHIIILQNKIDLIKESQALEQH-- 201 (466)
T ss_pred EEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhH-HHHHHHh-hhceEEEEechhhhhhHHHHHHHH--
Confidence 478999999987665555555567999999877664322222222 2222111 136789999999998754433222
Q ss_pred ccCCCCCHHHHHHHHHHc--CCceEEEeccCCcCCHHHHHHHHHHHHhhhcc
Q psy4710 134 MKQEPVKPEEGRAMAQKI--NAFAYLECSAKSKEGVREVFETATRAALQVKK 183 (192)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~~~ 183 (192)
+..+.|.+.- ...|++++||.-+.|++-+.++|.+++-.+-+
T Consensus 202 --------e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIPvPvR 245 (466)
T KOG0466|consen 202 --------EQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIPVPVR 245 (466)
T ss_pred --------HHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCCCCcc
Confidence 2233444322 23599999999999999999999999876643
No 361
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.74 E-value=5.7e-07 Score=59.06 Aligned_cols=115 Identities=19% Similarity=0.273 Sum_probs=67.3
Q ss_pred CcccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCC-CCCcccc-----------
Q psy4710 1 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTA-GQEDYDR----------- 68 (192)
Q Consensus 1 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~-g~~~~~~----------- 68 (192)
|....+||++.|+||+||||++.++...-....+ ..+-..+..+.-.+..+-|.+.|+. |...+..
T Consensus 1 ~~~~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~--kvgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGk 78 (179)
T COG1618 1 MIKMAMKIFITGRPGVGKTTLVLKIAEKLREKGY--KVGGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGK 78 (179)
T ss_pred CCCcceEEEEeCCCCccHHHHHHHHHHHHHhcCc--eeeeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccce
Confidence 4567899999999999999999988754333321 2223334444556677778888887 3111100
Q ss_pred ----------c----ccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhC-CCCcEEEEeecccc
Q psy4710 69 ----------L----RPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDL 121 (192)
Q Consensus 69 ----------~----~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~ 121 (192)
. ....++.+| ++++|=-.+- +.....+...+.... .+.|+|.++.+.+.
T Consensus 79 Y~V~v~~le~i~~~al~rA~~~aD--vIIIDEIGpM--Elks~~f~~~ve~vl~~~kpliatlHrrsr 142 (179)
T COG1618 79 YGVNVEGLEEIAIPALRRALEEAD--VIIIDEIGPM--ELKSKKFREAVEEVLKSGKPLIATLHRRSR 142 (179)
T ss_pred EEeeHHHHHHHhHHHHHHHhhcCC--EEEEecccch--hhccHHHHHHHHHHhcCCCcEEEEEecccC
Confidence 0 011223345 4455555543 222234555555443 47898888887764
No 362
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.74 E-value=6.1e-08 Score=64.78 Aligned_cols=83 Identities=20% Similarity=0.147 Sum_probs=54.0
Q ss_pred CEEEEEEECCChhhhhchhhhhH-HHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceE
Q psy4710 78 DVILMCFSIDSPDSLENIPEKWT-PEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAY 156 (192)
Q Consensus 78 ~~~i~v~d~~~~~~~~~~~~~~~-~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (192)
|.+++|+|+.++.+.... .+. ..+.. .++|+++|+||+|+..... .......+..... .++
T Consensus 1 Dvvl~VvD~~~p~~~~~~--~i~~~~~~~--~~~p~IiVlNK~Dl~~~~~-------------~~~~~~~~~~~~~-~~i 62 (155)
T cd01849 1 DVILEVLDARDPLGTRSP--DIERVLIKE--KGKKLILVLNKADLVPKEV-------------LRKWLAYLRHSYP-TIP 62 (155)
T ss_pred CEEEEEEeccCCccccCH--HHHHHHHhc--CCCCEEEEEechhcCCHHH-------------HHHHHHHHHhhCC-ceE
Confidence 689999999887544322 222 12222 3799999999999854210 0111122322223 478
Q ss_pred EEeccCCcCCHHHHHHHHHHHH
Q psy4710 157 LECSAKSKEGVREVFETATRAA 178 (192)
Q Consensus 157 ~~~Sa~~~~gi~~~~~~i~~~~ 178 (192)
+.+||+++.|++++++.+.+..
T Consensus 63 i~vSa~~~~gi~~L~~~i~~~~ 84 (155)
T cd01849 63 FKISATNGQGIEKKESAFTKQT 84 (155)
T ss_pred EEEeccCCcChhhHHHHHHHHh
Confidence 8999999999999999987754
No 363
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.74 E-value=3e-08 Score=74.32 Aligned_cols=83 Identities=14% Similarity=-0.009 Sum_probs=55.5
Q ss_pred eeEEEEcCCCCchhHHHHHHhhCCC-CCcccCceeeeee-EEEEECCe---------------EEEEEEEeCCCCCccc-
Q psy4710 6 KKLVIVGDGACGKTCLLIVFSKDQF-PEVYVPTVFENYV-ADIEVDSK---------------QVELALWDTAGQEDYD- 67 (192)
Q Consensus 6 ~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~-~~~~~~~~---------------~~~~~l~D~~g~~~~~- 67 (192)
+++.++|.|++|||||.+++.+... .....|..+.... -.+.+.+. ...+.+.|+||...-.
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 7999999999999999999999876 4433343322221 12222221 2468999999954322
Q ss_pred ------ccccccCCCCCEEEEEEECCC
Q psy4710 68 ------RLRPLSYPDTDVILMCFSIDS 88 (192)
Q Consensus 68 ------~~~~~~~~~~~~~i~v~d~~~ 88 (192)
......++.+|++++|++..+
T Consensus 83 ~g~Glgn~fL~~ir~~d~l~hVvr~f~ 109 (368)
T TIGR00092 83 KGEGLGNQFLANIREVDIIQHVVRCFE 109 (368)
T ss_pred cccCcchHHHHHHHhCCEEEEEEeCCC
Confidence 122335678999999999864
No 364
>KOG0467|consensus
Probab=98.72 E-value=2.8e-08 Score=79.09 Aligned_cols=113 Identities=17% Similarity=0.070 Sum_probs=76.8
Q ss_pred ceeEEEEcCCCCchhHHHHHHhhCCCCCcccCcee--------eee-------eEEEEECCeEEEEEEEeCCCCCccccc
Q psy4710 5 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVF--------ENY-------VADIEVDSKQVELALWDTAGQEDYDRL 69 (192)
Q Consensus 5 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~--------~~~-------~~~~~~~~~~~~~~l~D~~g~~~~~~~ 69 (192)
--+++++.+..-|||||...|+...-.......+. +.. .-.+..-.+.+.+.++|+|||-+|.+.
T Consensus 9 irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf~se 88 (887)
T KOG0467|consen 9 IRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDFSSE 88 (887)
T ss_pred eeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccchhhh
Confidence 35789999999999999998876432111111110 000 111223346788999999999999999
Q ss_pred ccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccc
Q psy4710 70 RPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDL 121 (192)
Q Consensus 70 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~ 121 (192)
.....+-+|++++++|+..+-.-+... .+.+.+ ..+...++|+||+|.
T Consensus 89 vssas~l~d~alvlvdvvegv~~qt~~-vlrq~~---~~~~~~~lvinkidr 136 (887)
T KOG0467|consen 89 VSSASRLSDGALVLVDVVEGVCSQTYA-VLRQAW---IEGLKPILVINKIDR 136 (887)
T ss_pred hhhhhhhcCCcEEEEeeccccchhHHH-HHHHHH---HccCceEEEEehhhh
Confidence 999999999999999998764333321 122222 236788999999994
No 365
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.68 E-value=1.8e-07 Score=72.83 Aligned_cols=141 Identities=12% Similarity=0.088 Sum_probs=86.4
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEE
Q psy4710 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMC 83 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v 83 (192)
-++=++|+||||+|||||+..|.............+. .....++...+++..+|.. .. ......+-+|+++++
T Consensus 68 PPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~GP----iTvvsgK~RRiTflEcp~D--l~-~miDvaKIaDLVlLl 140 (1077)
T COG5192 68 PPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGP----ITVVSGKTRRITFLECPSD--LH-QMIDVAKIADLVLLL 140 (1077)
T ss_pred CCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCCc----eEEeecceeEEEEEeChHH--HH-HHHhHHHhhheeEEE
Confidence 4677889999999999999988775432221111111 1134567778999999942 22 223355678999999
Q ss_pred EECCChhhhhchhhhhHHHHhhhCCCCcE-EEEeecccccCCccchhhhhhccCCCCCHHHHHH-HHHHcCCceEEEecc
Q psy4710 84 FSIDSPDSLENIPEKWTPEVKHFCPNVPI-ILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRA-MAQKINAFAYLECSA 161 (192)
Q Consensus 84 ~d~~~~~~~~~~~~~~~~~~~~~~~~~p~-ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~Sa 161 (192)
+|..-+-..+.+ .++..+..+ +.|- +-|+|..|+..........+ ..-..+ |.+.++...+|.+|.
T Consensus 141 IdgnfGfEMETm--EFLnil~~H--GmPrvlgV~ThlDlfk~~stLr~~K--------KrlkhRfWtEiyqGaKlFylsg 208 (1077)
T COG5192 141 IDGNFGFEMETM--EFLNILISH--GMPRVLGVVTHLDLFKNPSTLRSIK--------KRLKHRFWTEIYQGAKLFYLSG 208 (1077)
T ss_pred eccccCceehHH--HHHHHHhhc--CCCceEEEEeecccccChHHHHHHH--------HHHhhhHHHHHcCCceEEEecc
Confidence 998765333333 456665555 6664 56889999987543322111 111123 334455567787776
Q ss_pred CC
Q psy4710 162 KS 163 (192)
Q Consensus 162 ~~ 163 (192)
..
T Consensus 209 V~ 210 (1077)
T COG5192 209 VE 210 (1077)
T ss_pred cc
Confidence 54
No 366
>KOG0447|consensus
Probab=98.63 E-value=7.6e-07 Score=69.14 Aligned_cols=69 Identities=19% Similarity=0.244 Sum_probs=43.5
Q ss_pred EEEEEeCCCCC-------------cccccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeeccc
Q psy4710 54 ELALWDTAGQE-------------DYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 120 (192)
Q Consensus 54 ~~~l~D~~g~~-------------~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 120 (192)
.+.++|.||-- .......++.++.+++|+|+--..-+.-......+...+... +...|+|+||.|
T Consensus 413 RMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVDAERSnVTDLVsq~DP~--GrRTIfVLTKVD 490 (980)
T KOG0447|consen 413 RMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVDAERSIVTDLVSQMDPH--GRRTIFVLTKVD 490 (980)
T ss_pred eeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcchhhhhHHHHHHhcCCC--CCeeEEEEeecc
Confidence 57889999921 122344567789999999985443222222212333333333 788999999999
Q ss_pred ccCC
Q psy4710 121 LRND 124 (192)
Q Consensus 121 ~~~~ 124 (192)
+.+.
T Consensus 491 lAEk 494 (980)
T KOG0447|consen 491 LAEK 494 (980)
T ss_pred hhhh
Confidence 9874
No 367
>KOG1491|consensus
Probab=98.63 E-value=7.2e-08 Score=70.33 Aligned_cols=87 Identities=20% Similarity=0.135 Sum_probs=57.3
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeee-eEEEEEC---------------CeEEEEEEEeCCCCCccc
Q psy4710 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVD---------------SKQVELALWDTAGQEDYD 67 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~---------------~~~~~~~l~D~~g~~~~~ 67 (192)
..+++.++|.|++|||||.|+|.+......-.|..+... ...+.+. .....++++|++|...-.
T Consensus 19 ~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkGA 98 (391)
T KOG1491|consen 19 NNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKGA 98 (391)
T ss_pred CcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccCc
Confidence 578999999999999999999999776543333332221 1122111 123578999999943322
Q ss_pred -------ccccccCCCCCEEEEEEECCChh
Q psy4710 68 -------RLRPLSYPDTDVILMCFSIDSPD 90 (192)
Q Consensus 68 -------~~~~~~~~~~~~~i~v~d~~~~~ 90 (192)
......++.+|+++-|+++.+..
T Consensus 99 s~G~GLGN~FLs~iR~vDaifhVVr~f~d~ 128 (391)
T KOG1491|consen 99 SAGEGLGNKFLSHIRHVDAIFHVVRAFEDT 128 (391)
T ss_pred ccCcCchHHHHHhhhhccceeEEEEecCcc
Confidence 22234567899999999886643
No 368
>PRK12288 GTPase RsgA; Reviewed
Probab=98.63 E-value=7.8e-08 Score=72.17 Aligned_cols=58 Identities=16% Similarity=0.140 Sum_probs=35.6
Q ss_pred eEEEEcCCCCchhHHHHHHhhCCCCCcccCc-------eeeeeeEEEEECCeEEEEEEEeCCCCCccc
Q psy4710 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPT-------VFENYVADIEVDSKQVELALWDTAGQEDYD 67 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~ 67 (192)
-++++|.+|+|||||+|+|++.....+..-. .++....-+.+..+. .++||||...+.
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~~---~liDTPGir~~~ 271 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHGG---DLIDSPGVREFG 271 (347)
T ss_pred CEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCCC---EEEECCCCCccc
Confidence 3789999999999999999976543221111 112222222333222 489999976654
No 369
>KOG0459|consensus
Probab=98.62 E-value=2.6e-08 Score=74.07 Aligned_cols=164 Identities=13% Similarity=0.100 Sum_probs=100.2
Q ss_pred ccceeEEEEcCCCCchhHHHHHHhhCC--CC----------------Cc-c-----cCceeeee------eEEEEECCeE
Q psy4710 3 AIRKKLVIVGDGACGKTCLLIVFSKDQ--FP----------------EV-Y-----VPTVFENY------VADIEVDSKQ 52 (192)
Q Consensus 3 ~~~~~i~v~G~~~~GKSsli~~l~~~~--~~----------------~~-~-----~~~~~~~~------~~~~~~~~~~ 52 (192)
...+++.++|+..+||||+-.+++... .. +. | +....++. .-...++-..
T Consensus 77 k~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte~ 156 (501)
T KOG0459|consen 77 KEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETEN 156 (501)
T ss_pred CCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEecc
Confidence 357899999999999999886654311 00 00 0 00000000 0011234455
Q ss_pred EEEEEEeCCCCCcccccccccCCCCCEEEEEEECCChh---hhhchh-hhhHHHHhhhCCCCcEEEEeecccccCCccch
Q psy4710 53 VELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPD---SLENIP-EKWTPEVKHFCPNVPIILVGNKKDLRNDPNTI 128 (192)
Q Consensus 53 ~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~ 128 (192)
..+++.|.|||..|......-..++|..++|+.+.-.+ .|+..- ..-...+.+...-...|+++||+|....+...
T Consensus 157 ~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddPtvnWs~ 236 (501)
T KOG0459|consen 157 KRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWSN 236 (501)
T ss_pred eeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccCCccCcch
Confidence 67999999999999888888888999999999885432 222221 11222333333357889999999998876655
Q ss_pred hhhhhccCCCCCHHHHHHHHHHc-----CCceEEEeccCCcCCHHHHHH
Q psy4710 129 KELNKMKQEPVKPEEGRAMAQKI-----NAFAYLECSAKSKEGVREVFE 172 (192)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~gi~~~~~ 172 (192)
+.+++... +...|...+ ....++++|..+|.++++...
T Consensus 237 eRy~E~~~------k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~ 279 (501)
T KOG0459|consen 237 ERYEECKE------KLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD 279 (501)
T ss_pred hhHHHHHH------HHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence 55543222 222233222 224689999999999887653
No 370
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.62 E-value=2.1e-07 Score=69.17 Aligned_cols=96 Identities=11% Similarity=0.095 Sum_probs=54.2
Q ss_pred eEEEEEEEeCCCCCccccc-----------c-cccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeec
Q psy4710 51 KQVELALWDTAGQEDYDRL-----------R-PLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNK 118 (192)
Q Consensus 51 ~~~~~~l~D~~g~~~~~~~-----------~-~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK 118 (192)
.++.+.++||||....... . ...-...+..++|+|++... ..+. . ...+.+. -.+.-+|+||
T Consensus 195 ~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~--~~~~-~-a~~f~~~--~~~~giIlTK 268 (318)
T PRK10416 195 RGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQ--NALS-Q-AKAFHEA--VGLTGIILTK 268 (318)
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCh--HHHH-H-HHHHHhh--CCCCEEEEEC
Confidence 4467999999996543221 0 00112467889999998642 2221 1 1111111 1355899999
Q ss_pred ccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccCCcCCHHHHH
Q psy4710 119 KDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVF 171 (192)
Q Consensus 119 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~ 171 (192)
.|.... ...........+ .|+..++ +|++++++-
T Consensus 269 lD~t~~----------------~G~~l~~~~~~~-~Pi~~v~--~Gq~~~Dl~ 302 (318)
T PRK10416 269 LDGTAK----------------GGVVFAIADELG-IPIKFIG--VGEGIDDLQ 302 (318)
T ss_pred CCCCCC----------------ccHHHHHHHHHC-CCEEEEe--CCCChhhCc
Confidence 996542 122333444445 5888887 677776653
No 371
>PRK12289 GTPase RsgA; Reviewed
Probab=98.62 E-value=8.1e-08 Score=72.14 Aligned_cols=57 Identities=23% Similarity=0.140 Sum_probs=35.4
Q ss_pred eEEEEcCCCCchhHHHHHHhhCCCCCcccCce-------eeeeeEEEEECCeEEEEEEEeCCCCCcc
Q psy4710 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-------FENYVADIEVDSKQVELALWDTAGQEDY 66 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~l~D~~g~~~~ 66 (192)
.++++|++|+|||||+|+|++........... ++....-+....++ .++||||...+
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~~g~---~liDTPG~~~~ 237 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELPNGG---LLADTPGFNQP 237 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECCCCc---EEEeCCCcccc
Confidence 37999999999999999999765332221111 22222233333332 68999996443
No 372
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.61 E-value=3.3e-08 Score=65.70 Aligned_cols=59 Identities=15% Similarity=0.150 Sum_probs=33.4
Q ss_pred eeEEEEcCCCCchhHHHHHHhhCCCCCcc-------cCceeeeeeEEEEECCeEEEEEEEeCCCCCccc
Q psy4710 6 KKLVIVGDGACGKTCLLIVFSKDQFPEVY-------VPTVFENYVADIEVDSKQVELALWDTAGQEDYD 67 (192)
Q Consensus 6 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~ 67 (192)
-.++++|++|+|||||+|.|......... ....+++...-+..+.. ..++||||...+.
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~g---~~iIDTPGf~~~~ 101 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPDG---GYIIDTPGFRSFG 101 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETTS---EEEECSHHHHT--
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCCC---cEEEECCCCCccc
Confidence 46899999999999999999986422110 11122222333334333 3689999965443
No 373
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.60 E-value=4.2e-07 Score=61.75 Aligned_cols=88 Identities=22% Similarity=0.159 Sum_probs=58.1
Q ss_pred ccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHH
Q psy4710 70 RPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQ 149 (192)
Q Consensus 70 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (192)
....++++|.+++|+|+.++..-.. ..+... ..+.|+++|+||+|+.+... .....++.+
T Consensus 13 ~~~~i~~aD~il~v~D~~~~~~~~~--~~i~~~----~~~k~~ilVlNK~Dl~~~~~--------------~~~~~~~~~ 72 (171)
T cd01856 13 IKEKLKLVDLVIEVRDARIPLSSRN--PLLEKI----LGNKPRIIVLNKADLADPKK--------------TKKWLKYFE 72 (171)
T ss_pred HHHHHhhCCEEEEEeeccCccCcCC--hhhHhH----hcCCCEEEEEehhhcCChHH--------------HHHHHHHHH
Confidence 3456778999999999987643222 122222 23689999999999854200 011112222
Q ss_pred HcCCceEEEeccCCcCCHHHHHHHHHHHH
Q psy4710 150 KINAFAYLECSAKSKEGVREVFETATRAA 178 (192)
Q Consensus 150 ~~~~~~~~~~Sa~~~~gi~~~~~~i~~~~ 178 (192)
... .+++.+||+++.|++++.+.+...+
T Consensus 73 ~~~-~~vi~iSa~~~~gi~~L~~~l~~~l 100 (171)
T cd01856 73 SKG-EKVLFVNAKSGKGVKKLLKAAKKLL 100 (171)
T ss_pred hcC-CeEEEEECCCcccHHHHHHHHHHHH
Confidence 222 4678999999999999999998875
No 374
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.58 E-value=1.8e-07 Score=66.26 Aligned_cols=84 Identities=17% Similarity=0.132 Sum_probs=50.4
Q ss_pred ceeEEEEcCCCCchhHHHHHHhhC--CCCCcccCceeeee-eEE-EEE-CCeEEEEEEEeCCCCCccccc------cccc
Q psy4710 5 RKKLVIVGDGACGKTCLLIVFSKD--QFPEVYVPTVFENY-VAD-IEV-DSKQVELALWDTAGQEDYDRL------RPLS 73 (192)
Q Consensus 5 ~~~i~v~G~~~~GKSsli~~l~~~--~~~~~~~~~~~~~~-~~~-~~~-~~~~~~~~l~D~~g~~~~~~~------~~~~ 73 (192)
-.-|.|+|++++|||+|+|+|++. .+........++.. ..- ... ......+.++||+|....... ....
T Consensus 7 v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~~~ 86 (224)
T cd01851 7 VAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARLFA 86 (224)
T ss_pred EEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHHHH
Confidence 346899999999999999999998 55443222122111 111 111 123568999999996543221 1222
Q ss_pred CCC--CCEEEEEEECCC
Q psy4710 74 YPD--TDVILMCFSIDS 88 (192)
Q Consensus 74 ~~~--~~~~i~v~d~~~ 88 (192)
+.. ++.+|+..+...
T Consensus 87 l~~llss~~i~n~~~~~ 103 (224)
T cd01851 87 LATLLSSVLIYNSWETI 103 (224)
T ss_pred HHHHHhCEEEEeccCcc
Confidence 223 787777776654
No 375
>PRK13796 GTPase YqeH; Provisional
Probab=98.54 E-value=9.4e-07 Score=67.08 Aligned_cols=88 Identities=25% Similarity=0.381 Sum_probs=58.4
Q ss_pred CCCC-EEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCC
Q psy4710 75 PDTD-VILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINA 153 (192)
Q Consensus 75 ~~~~-~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (192)
...+ .+++|+|+.+.. ..|...+.+...+.|+++|+||+|+.+.....+ ........+++..+.
T Consensus 67 ~~~~~lIv~VVD~~D~~------~s~~~~L~~~~~~kpviLViNK~DLl~~~~~~~---------~i~~~l~~~~k~~g~ 131 (365)
T PRK13796 67 GDSDALVVNVVDIFDFN------GSWIPGLHRFVGNNPVLLVGNKADLLPKSVKKN---------KVKNWLRQEAKELGL 131 (365)
T ss_pred cccCcEEEEEEECccCC------CchhHHHHHHhCCCCEEEEEEchhhCCCccCHH---------HHHHHHHHHHHhcCC
Confidence 4444 899999988732 245666666555789999999999965211000 001122333444442
Q ss_pred --ceEEEeccCCcCCHHHHHHHHHHH
Q psy4710 154 --FAYLECSAKSKEGVREVFETATRA 177 (192)
Q Consensus 154 --~~~~~~Sa~~~~gi~~~~~~i~~~ 177 (192)
..++.+||+++.|++++++.+.+.
T Consensus 132 ~~~~v~~vSAk~g~gI~eL~~~I~~~ 157 (365)
T PRK13796 132 RPVDVVLISAQKGHGIDELLEAIEKY 157 (365)
T ss_pred CcCcEEEEECCCCCCHHHHHHHHHHh
Confidence 257899999999999999999765
No 376
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=98.54 E-value=2.3e-07 Score=79.88 Aligned_cols=112 Identities=21% Similarity=0.163 Sum_probs=63.0
Q ss_pred EEEEcCCCCchhHHHHHHhhCCCCCccc----C--ceeeeeeEEEEECCeEEEEEEEeCCCCCc--------cccccccc
Q psy4710 8 LVIVGDGACGKTCLLIVFSKDQFPEVYV----P--TVFENYVADIEVDSKQVELALWDTAGQED--------YDRLRPLS 73 (192)
Q Consensus 8 i~v~G~~~~GKSsli~~l~~~~~~~~~~----~--~~~~~~~~~~~~~~~~~~~~l~D~~g~~~--------~~~~~~~~ 73 (192)
.+|+|++|+||||++..- +..++-... . ....+..-...+.. ...++||+|..- ....|..+
T Consensus 114 YlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~wwf~~---~avliDtaG~y~~~~~~~~~~~~~W~~f 189 (1169)
T TIGR03348 114 YLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCDWWFTD---EAVLIDTAGRYTTQDSDPEEDAAAWLGF 189 (1169)
T ss_pred EEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccceEecC---CEEEEcCCCccccCCCcccccHHHHHHH
Confidence 479999999999999886 333332210 0 00101011112222 346999999321 11223332
Q ss_pred C---------CCCCEEEEEEECCChhh-----h----hchhhhhHHHHhhhCCCCcEEEEeecccccC
Q psy4710 74 Y---------PDTDVILMCFSIDSPDS-----L----ENIPEKWTPEVKHFCPNVPIILVGNKKDLRN 123 (192)
Q Consensus 74 ~---------~~~~~~i~v~d~~~~~~-----~----~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 123 (192)
+ +..+++|+++|+.+--. . ..+...+.+......-..|+.|++||+|+..
T Consensus 190 L~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll~ 257 (1169)
T TIGR03348 190 LGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLLA 257 (1169)
T ss_pred HHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhhc
Confidence 2 35899999999876421 1 1222222222333345899999999999875
No 377
>PRK14974 cell division protein FtsY; Provisional
Probab=98.53 E-value=1.4e-07 Score=70.35 Aligned_cols=96 Identities=15% Similarity=0.074 Sum_probs=53.6
Q ss_pred EEEEEEEeCCCCCcccccc----ccc--CCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCc
Q psy4710 52 QVELALWDTAGQEDYDRLR----PLS--YPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDP 125 (192)
Q Consensus 52 ~~~~~l~D~~g~~~~~~~~----~~~--~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 125 (192)
+..+.++||+|........ ... .-+.|..++|+|+...+..... ...+... -..--+++||.|.....
T Consensus 222 ~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~----a~~f~~~--~~~~giIlTKlD~~~~~ 295 (336)
T PRK14974 222 GIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQ----AREFNEA--VGIDGVILTKVDADAKG 295 (336)
T ss_pred CCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHH----HHHHHhc--CCCCEEEEeeecCCCCc
Confidence 3568999999965422111 111 1246888999998765321111 1112111 13458999999976522
Q ss_pred cchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccCCcCCHHHHHH
Q psy4710 126 NTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFE 172 (192)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~ 172 (192)
. .........+ .|+..++ +|++++++..
T Consensus 296 G----------------~~ls~~~~~~-~Pi~~i~--~Gq~v~Dl~~ 323 (336)
T PRK14974 296 G----------------AALSIAYVIG-KPILFLG--VGQGYDDLIP 323 (336)
T ss_pred c----------------HHHHHHHHHC-cCEEEEe--CCCChhhccc
Confidence 1 2223333344 5877776 6888876643
No 378
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.53 E-value=3.6e-07 Score=60.07 Aligned_cols=77 Identities=18% Similarity=0.148 Sum_probs=49.8
Q ss_pred cCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcC
Q psy4710 73 SYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKIN 152 (192)
Q Consensus 73 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (192)
.++.+|++++|+|+.++.+... ..+...+.....++|+++|+||+|+.+.. . .....+..+..+
T Consensus 8 ~i~~aD~vl~ViD~~~p~~~~~--~~l~~~l~~~~~~k~~iivlNK~DL~~~~------------~--~~~~~~~~~~~~ 71 (141)
T cd01857 8 VVERSDIVVQIVDARNPLLFRP--PDLERYVKEVDPRKKNILLLNKADLLTEE------------Q--RKAWAEYFKKEG 71 (141)
T ss_pred HHhhCCEEEEEEEccCCcccCC--HHHHHHHHhccCCCcEEEEEechhcCCHH------------H--HHHHHHHHHhcC
Confidence 4578999999999988754332 23444443333578999999999985421 0 112223333334
Q ss_pred CceEEEeccCCcCC
Q psy4710 153 AFAYLECSAKSKEG 166 (192)
Q Consensus 153 ~~~~~~~Sa~~~~g 166 (192)
.+++++||+++.+
T Consensus 72 -~~ii~iSa~~~~~ 84 (141)
T cd01857 72 -IVVVFFSALKENA 84 (141)
T ss_pred -CeEEEEEecCCCc
Confidence 4789999998764
No 379
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.53 E-value=2e-07 Score=67.84 Aligned_cols=96 Identities=11% Similarity=0.067 Sum_probs=54.9
Q ss_pred eEEEEEEEeCCCCCccccccc------------ccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeec
Q psy4710 51 KQVELALWDTAGQEDYDRLRP------------LSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNK 118 (192)
Q Consensus 51 ~~~~~~l~D~~g~~~~~~~~~------------~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK 118 (192)
.++.+.++||||......... ..-...|..++|+|++... +.+. ....+.+. -.+.-+|+||
T Consensus 153 ~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~--~~~~--~~~~f~~~--~~~~g~IlTK 226 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQ--NALE--QAKVFNEA--VGLTGIILTK 226 (272)
T ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCH--HHHH--HHHHHHhh--CCCCEEEEEc
Confidence 346789999999654322211 1112479999999997642 2221 11222221 1256899999
Q ss_pred ccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccCCcCCHHHHH
Q psy4710 119 KDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKSKEGVREVF 171 (192)
Q Consensus 119 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~ 171 (192)
.|.... ...........+ .|+..++ +|++++++-
T Consensus 227 lDe~~~----------------~G~~l~~~~~~~-~Pi~~~~--~Gq~~~dl~ 260 (272)
T TIGR00064 227 LDGTAK----------------GGIILSIAYELK-LPIKFIG--VGEKIDDLA 260 (272)
T ss_pred cCCCCC----------------ccHHHHHHHHHC-cCEEEEe--CCCChHhCc
Confidence 997552 122333344445 5877777 677776553
No 380
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.52 E-value=2.2e-07 Score=66.67 Aligned_cols=58 Identities=17% Similarity=0.204 Sum_probs=35.6
Q ss_pred eeEEEEcCCCCchhHHHHHHhhCCCCCccc-C------ceeeeeeEEEEECCeEEEEEEEeCCCCCccc
Q psy4710 6 KKLVIVGDGACGKTCLLIVFSKDQFPEVYV-P------TVFENYVADIEVDSKQVELALWDTAGQEDYD 67 (192)
Q Consensus 6 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~-~------~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~ 67 (192)
-.++++|++|+|||||+|+|.+........ + ..++.....+...+ -.++||||...+.
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l~~----~~liDtPG~~~~~ 185 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHFHG----GLIADTPGFNEFG 185 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEcCC----cEEEeCCCccccC
Confidence 468899999999999999999864322111 1 11222222233322 2799999965443
No 381
>KOG1534|consensus
Probab=98.50 E-value=1.2e-07 Score=64.82 Aligned_cols=73 Identities=16% Similarity=0.135 Sum_probs=46.4
Q ss_pred CCcEEEEeecccccCCccchhhhhhccCC-----------CCC------HHHHHHHHHHcCCceEEEeccCCcCCHHHHH
Q psy4710 109 NVPIILVGNKKDLRNDPNTIKELNKMKQE-----------PVK------PEEGRAMAQKINAFAYLECSAKSKEGVREVF 171 (192)
Q Consensus 109 ~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----------~~~------~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~ 171 (192)
..|-|=|++|+|+....+..+.-.-+.+. ..+ ......+...++.+.|++....+.+.|+.++
T Consensus 164 E~P~INvlsKMDLlk~~~k~~l~~Fl~~d~~~l~~~~~~~~~s~Kf~~L~~~i~~~v~d~~Mv~FlPl~~~~eeSi~~iL 243 (273)
T KOG1534|consen 164 EVPHINVLSKMDLLKDKNKKELERFLNPDEYLLLEDSEINLRSPKFKKLTKCIAQLVDDYSMVNFLPLDSSDEESINIIL 243 (273)
T ss_pred cCcchhhhhHHHHhhhhhHHHHHHhcCCchhhhhcccccccccHHHHHHHHHHHHHhccccceeeeecCCCCHHHHHHHH
Confidence 79999999999998874432211111110 000 1112234455666788999999999999999
Q ss_pred HHHHHHHhhh
Q psy4710 172 ETATRAALQV 181 (192)
Q Consensus 172 ~~i~~~~~~~ 181 (192)
..|-.++.-.
T Consensus 244 ~~ID~aiQy~ 253 (273)
T KOG1534|consen 244 SYIDDAIQYG 253 (273)
T ss_pred HHHHHHHHhc
Confidence 8887776543
No 382
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.50 E-value=7.2e-07 Score=65.26 Aligned_cols=91 Identities=20% Similarity=0.182 Sum_probs=60.7
Q ss_pred ccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHH
Q psy4710 70 RPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQ 149 (192)
Q Consensus 70 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (192)
....++.+|++++|+|+.++.+... ..+...+ .+.|+++|+||+|+.+... .......+ +
T Consensus 15 ~~~~l~~aDvVl~V~Dar~p~~~~~--~~i~~~l----~~kp~IiVlNK~DL~~~~~-------------~~~~~~~~-~ 74 (276)
T TIGR03596 15 IKEKLKLVDVVIEVLDARIPLSSRN--PMIDEIR----GNKPRLIVLNKADLADPAV-------------TKQWLKYF-E 74 (276)
T ss_pred HHHHHhhCCEEEEEEeCCCCCCCCC--hhHHHHH----CCCCEEEEEEccccCCHHH-------------HHHHHHHH-H
Confidence 3456788999999999987643322 1233333 3689999999999854210 01111122 2
Q ss_pred HcCCceEEEeccCCcCCHHHHHHHHHHHHhhh
Q psy4710 150 KINAFAYLECSAKSKEGVREVFETATRAALQV 181 (192)
Q Consensus 150 ~~~~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~ 181 (192)
..+ .+++.+||+++.|++++.+.+.+.+.+.
T Consensus 75 ~~~-~~vi~iSa~~~~gi~~L~~~i~~~~~~~ 105 (276)
T TIGR03596 75 EKG-IKALAINAKKGKGVKKIIKAAKKLLKEK 105 (276)
T ss_pred HcC-CeEEEEECCCcccHHHHHHHHHHHHHHh
Confidence 223 4789999999999999999988877544
No 383
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=98.46 E-value=6.8e-06 Score=62.28 Aligned_cols=154 Identities=18% Similarity=0.259 Sum_probs=86.1
Q ss_pred ceeEEEEcCCCCchhHHHHHHhhCCC-----------------CCc----ccCceeeee----eEEEEE-CCeEEEEEEE
Q psy4710 5 RKKLVIVGDGACGKTCLLIVFSKDQF-----------------PEV----YVPTVFENY----VADIEV-DSKQVELALW 58 (192)
Q Consensus 5 ~~~i~v~G~~~~GKSsli~~l~~~~~-----------------~~~----~~~~~~~~~----~~~~~~-~~~~~~~~l~ 58 (192)
.+=|.|+||..+|||||+.+|+.... ++. ...++...+ ...+.+ ++-.+++.++
T Consensus 17 dIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVRLi 96 (492)
T PF09547_consen 17 DIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVRLI 96 (492)
T ss_pred ceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEEEE
Confidence 45589999999999999999976221 111 011111111 112333 4567889999
Q ss_pred eCCC--------CC-----c------cccccc----------ccCC--CCCEEEEEEECCC----hhhhhchhhhhHHHH
Q psy4710 59 DTAG--------QE-----D------YDRLRP----------LSYP--DTDVILMCFSIDS----PDSLENIPEKWTPEV 103 (192)
Q Consensus 59 D~~g--------~~-----~------~~~~~~----------~~~~--~~~~~i~v~d~~~----~~~~~~~~~~~~~~~ 103 (192)
|+.| +. + |....+ ..++ ..-++++.-|.+= ++++....+.....+
T Consensus 97 DCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~EL 176 (492)
T PF09547_consen 97 DCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIEEL 176 (492)
T ss_pred eecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHHHH
Confidence 9998 10 0 111110 0111 2233444433321 345556656667777
Q ss_pred hhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCCceEEEeccC--CcCCHHHHHHHHH
Q psy4710 104 KHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINAFAYLECSAK--SKEGVREVFETAT 175 (192)
Q Consensus 104 ~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~--~~~gi~~~~~~i~ 175 (192)
+.. ++|++|++|-.+-.. .-+.+-..++.+.++ +|++++++. +.+.|..+++.+.
T Consensus 177 k~i--gKPFvillNs~~P~s--------------~et~~L~~eL~ekY~-vpVlpvnc~~l~~~DI~~Il~~vL 233 (492)
T PF09547_consen 177 KEI--GKPFVILLNSTKPYS--------------EETQELAEELEEKYD-VPVLPVNCEQLREEDITRILEEVL 233 (492)
T ss_pred HHh--CCCEEEEEeCCCCCC--------------HHHHHHHHHHHHHhC-CcEEEeehHHcCHHHHHHHHHHHH
Confidence 776 899999999887432 122344556677777 588877664 3444555555443
No 384
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.42 E-value=3.6e-07 Score=67.16 Aligned_cols=59 Identities=20% Similarity=0.160 Sum_probs=36.8
Q ss_pred eeEEEEcCCCCchhHHHHHHhhCCCCCcccCc-------eeeeeeEEEEECCeEEEEEEEeCCCCCccc
Q psy4710 6 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPT-------VFENYVADIEVDSKQVELALWDTAGQEDYD 67 (192)
Q Consensus 6 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~ 67 (192)
..++++|++|+|||||+|.|++.......... .++.....+..... ..++||||...+.
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~---~~liDtPG~~~~~ 227 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGG---GLLIDTPGFREFG 227 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCC---CEEEECCCCCccC
Confidence 46899999999999999999986543321111 11222222233222 2589999976653
No 385
>PRK00098 GTPase RsgA; Reviewed
Probab=98.41 E-value=7.4e-07 Score=65.87 Aligned_cols=58 Identities=22% Similarity=0.199 Sum_probs=35.9
Q ss_pred eeEEEEcCCCCchhHHHHHHhhCCCCCcccCc-------eeeeeeEEEEECCeEEEEEEEeCCCCCcc
Q psy4710 6 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPT-------VFENYVADIEVDSKQVELALWDTAGQEDY 66 (192)
Q Consensus 6 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~l~D~~g~~~~ 66 (192)
..++++|++|+|||||+|+|++........-. .++.....+..... ..++||||...+
T Consensus 165 k~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~~~---~~~~DtpG~~~~ 229 (298)
T PRK00098 165 KVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLPGG---GLLIDTPGFSSF 229 (298)
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcCCC---cEEEECCCcCcc
Confidence 35899999999999999999986543322111 12222222223322 378999996543
No 386
>PRK13796 GTPase YqeH; Provisional
Probab=98.41 E-value=4.8e-07 Score=68.67 Aligned_cols=55 Identities=24% Similarity=0.214 Sum_probs=34.5
Q ss_pred eeEEEEcCCCCchhHHHHHHhhCCCCC-----cccCceeeeeeEEEEECCeEEEEEEEeCCCC
Q psy4710 6 KKLVIVGDGACGKTCLLIVFSKDQFPE-----VYVPTVFENYVADIEVDSKQVELALWDTAGQ 63 (192)
Q Consensus 6 ~~i~v~G~~~~GKSsli~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~ 63 (192)
.++.++|.+|+|||||+|+|++..... ....++++.....+.++.+ ..++||||-
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~~---~~l~DTPGi 220 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDDG---SFLYDTPGI 220 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCCC---cEEEECCCc
Confidence 479999999999999999998643111 1111222222333333322 379999995
No 387
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.40 E-value=6e-07 Score=65.19 Aligned_cols=58 Identities=17% Similarity=0.153 Sum_probs=36.5
Q ss_pred eEEEEcCCCCchhHHHHHHhhCCCC------Ccc-cCceeeeeeEEEEECCeEEEEEEEeCCCCCccc
Q psy4710 7 KLVIVGDGACGKTCLLIVFSKDQFP------EVY-VPTVFENYVADIEVDSKQVELALWDTAGQEDYD 67 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~~~~~------~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~ 67 (192)
-.+++|++|+|||||+|+|...... ... ....+++...-+.+...+ .++||||...+.
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG---~iiDTPGf~~~~ 230 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGG---WIIDTPGFRSLG 230 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCC---EEEeCCCCCccC
Confidence 4689999999999999999873321 111 122233334444444333 578999976554
No 388
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.40 E-value=7.5e-07 Score=67.53 Aligned_cols=111 Identities=14% Similarity=0.076 Sum_probs=58.7
Q ss_pred eeEEEEcCCCCchhHHHHHHhhCCCC-----CcccCceeeeeeEEEEECCeEEEEEEEeCCCCCccccccc---------
Q psy4710 6 KKLVIVGDGACGKTCLLIVFSKDQFP-----EVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRP--------- 71 (192)
Q Consensus 6 ~~i~v~G~~~~GKSsli~~l~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~--------- 71 (192)
.++.++|.+|+|||||+|+|++.... .....+.++.....+.... .+.++||||-........
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~~~---~~~l~DtPG~~~~~~~~~~l~~~~l~~ 231 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLDD---GHSLYDTPGIINSHQMAHYLDKKDLKY 231 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEeCC---CCEEEECCCCCChhHhhhhcCHHHHhh
Confidence 47999999999999999999985421 1111122222222333321 257999999543221110
Q ss_pred -ccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccC
Q psy4710 72 -LSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN 123 (192)
Q Consensus 72 -~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 123 (192)
..-+......+.++....-.+..+ .++..+.. ++..+.+.+++.+..+
T Consensus 232 ~~~~~~i~~~~~~l~~~q~~~~ggl--~~~d~~~~--~~~~~~~~~~~~~~~h 280 (360)
T TIGR03597 232 ITPKKEIKPKTYQLNPNQTLFLGGL--ARFDYLKG--EKTSFTFYVSNELNIH 280 (360)
T ss_pred cCCCCccCceEEEeCCCCEEEEceE--EEEEEecC--CceEEEEEccCCceeE
Confidence 011234556666665443222222 22222221 2456677778777655
No 389
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.38 E-value=2.7e-06 Score=62.59 Aligned_cols=91 Identities=22% Similarity=0.240 Sum_probs=60.7
Q ss_pred ccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHH
Q psy4710 70 RPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQ 149 (192)
Q Consensus 70 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (192)
....++.+|++|+|+|+.++.+... ..+...+ .+.|+++|+||+|+.+.. . .....++.+
T Consensus 18 l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~----~~kp~iiVlNK~DL~~~~-------------~-~~~~~~~~~ 77 (287)
T PRK09563 18 IKENLKLVDVVIEVLDARIPLSSEN--PMIDKII----GNKPRLLILNKSDLADPE-------------V-TKKWIEYFE 77 (287)
T ss_pred HHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHh----CCCCEEEEEEchhcCCHH-------------H-HHHHHHHHH
Confidence 3456778999999999987643332 1233333 268999999999985410 0 011112222
Q ss_pred HcCCceEEEeccCCcCCHHHHHHHHHHHHhhh
Q psy4710 150 KINAFAYLECSAKSKEGVREVFETATRAALQV 181 (192)
Q Consensus 150 ~~~~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~ 181 (192)
..+ .+++.+||+++.|++++.+.+...+.+.
T Consensus 78 ~~~-~~vi~vSa~~~~gi~~L~~~l~~~l~~~ 108 (287)
T PRK09563 78 EQG-IKALAINAKKGQGVKKILKAAKKLLKEK 108 (287)
T ss_pred HcC-CeEEEEECCCcccHHHHHHHHHHHHHHH
Confidence 223 4788999999999999999988877554
No 390
>KOG1424|consensus
Probab=98.37 E-value=4.4e-07 Score=69.66 Aligned_cols=56 Identities=16% Similarity=0.109 Sum_probs=41.3
Q ss_pred ceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCC
Q psy4710 5 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQ 63 (192)
Q Consensus 5 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~ 63 (192)
.+.|.++|-||+||||+||+|.+.+....+..++-+....++.+.. .+.++|+||.
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~ls~---~v~LCDCPGL 369 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQTIFLSP---SVCLCDCPGL 369 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeEEEEcCC---CceecCCCCc
Confidence 4889999999999999999999998766644444333333333332 5789999993
No 391
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.37 E-value=1.7e-06 Score=58.03 Aligned_cols=21 Identities=33% Similarity=0.324 Sum_probs=19.1
Q ss_pred EEEEcCCCCchhHHHHHHhhC
Q psy4710 8 LVIVGDGACGKTCLLIVFSKD 28 (192)
Q Consensus 8 i~v~G~~~~GKSsli~~l~~~ 28 (192)
+++.|..|+|||||+++++..
T Consensus 3 ~~l~G~~GsGKTtl~~~l~~~ 23 (158)
T cd03112 3 TVLTGFLGAGKTTLLNHILTE 23 (158)
T ss_pred EEEEECCCCCHHHHHHHHHhc
Confidence 679999999999999998875
No 392
>PRK01889 GTPase RsgA; Reviewed
Probab=98.26 E-value=7.5e-06 Score=62.02 Aligned_cols=84 Identities=18% Similarity=0.166 Sum_probs=55.7
Q ss_pred CCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcCC
Q psy4710 74 YPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKINA 153 (192)
Q Consensus 74 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (192)
..+.|.+++|+++..+-... ..+.++...... +.|.+||+||+|+.++. ......+......
T Consensus 110 aANvD~vliV~s~~p~~~~~-~ldr~L~~a~~~--~i~piIVLNK~DL~~~~---------------~~~~~~~~~~~~g 171 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLR-RIERYLALAWES--GAEPVIVLTKADLCEDA---------------EEKIAEVEALAPG 171 (356)
T ss_pred EEeCCEEEEEEecCCCCChh-HHHHHHHHHHHc--CCCEEEEEEChhcCCCH---------------HHHHHHHHHhCCC
Confidence 56899999999986332222 223455444443 78889999999997521 0111122222223
Q ss_pred ceEEEeccCCcCCHHHHHHHHH
Q psy4710 154 FAYLECSAKSKEGVREVFETAT 175 (192)
Q Consensus 154 ~~~~~~Sa~~~~gi~~~~~~i~ 175 (192)
++++.+|++++.|++++..++.
T Consensus 172 ~~Vi~vSa~~g~gl~~L~~~L~ 193 (356)
T PRK01889 172 VPVLAVSALDGEGLDVLAAWLS 193 (356)
T ss_pred CcEEEEECCCCccHHHHHHHhh
Confidence 6889999999999999999874
No 393
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=98.25 E-value=5.8e-06 Score=55.87 Aligned_cols=107 Identities=20% Similarity=0.312 Sum_probs=53.3
Q ss_pred eEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeC-CCCC---------------------
Q psy4710 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDT-AGQE--------------------- 64 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~-~g~~--------------------- 64 (192)
||++.|++|+||||++++++..-..... ...-.++..+.-++...-+.+.|. .|..
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l~~~~~--~v~Gf~t~evr~~g~r~GF~iv~l~~g~~~~la~~~~~~~~~vgky~v~~ 78 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEELKKKGL--PVGGFYTEEVRENGRRIGFDIVDLNSGEEAILARVDFRSGPRVGKYFVDL 78 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHHHHTCG--GEEEEEEEEEETTSSEEEEEEEET-TS-EEEEEETTSS-SCECTTCEE-H
T ss_pred CEEEECcCCCCHHHHHHHHHHHhhccCC--ccceEEeecccCCCceEEEEEEECcCCCccccccccccccccCCCEEEcH
Confidence 6899999999999999998764321111 122222333334455566666666 3311
Q ss_pred -cccccccccCC----CCCEEEEEEECCChhhhhchhhhhHHHHhhhC-CCCcEEEEeecc
Q psy4710 65 -DYDRLRPLSYP----DTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKK 119 (192)
Q Consensus 65 -~~~~~~~~~~~----~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~ 119 (192)
.|.......++ .++ ++++|=-.+ ++.....|.+.+.... ++.|++.++.+.
T Consensus 79 e~fe~~~~~~L~~~~~~~~--liviDEIG~--mEl~~~~F~~~v~~~l~s~~~vi~vv~~~ 135 (168)
T PF03266_consen 79 ESFEEIGLPALRNALSSSD--LIVIDEIGK--MELKSPGFREAVEKLLDSNKPVIGVVHKR 135 (168)
T ss_dssp HHHHCCCCCCCHHHHHCCH--EEEE---ST--TCCC-CHHHHHHHHHHCTTSEEEEE--SS
T ss_pred HHHHHHHHHHHHhhcCCCC--EEEEeccch--hhhcCHHHHHHHHHHHcCCCcEEEEEecC
Confidence 01111112222 334 667665544 3333335555555433 468888888777
No 394
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.24 E-value=1.3e-06 Score=66.96 Aligned_cols=66 Identities=14% Similarity=0.035 Sum_probs=38.7
Q ss_pred EEEEEEEeCCCCCcccccccc------cCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccC
Q psy4710 52 QVELALWDTAGQEDYDRLRPL------SYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN 123 (192)
Q Consensus 52 ~~~~~l~D~~g~~~~~~~~~~------~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 123 (192)
++.+.++||||.......... .....+-+++|+|+...+.-.. ....+... -.+.-+|+||.|...
T Consensus 182 ~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~----~a~~F~~~--~~~~g~IlTKlD~~a 253 (429)
T TIGR01425 182 NFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEA----QAKAFKDS--VDVGSVIITKLDGHA 253 (429)
T ss_pred CCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHH----HHHHHHhc--cCCcEEEEECccCCC
Confidence 568899999996443221111 1225688999999876532211 12222221 236688899999754
No 395
>KOG0469|consensus
Probab=98.24 E-value=1.5e-06 Score=66.87 Aligned_cols=113 Identities=17% Similarity=0.138 Sum_probs=76.2
Q ss_pred eeEEEEcCCCCchhHHHHHHhhCCCC------------CcccCc---eeeeeeEEE----------------EECCeEEE
Q psy4710 6 KKLVIVGDGACGKTCLLIVFSKDQFP------------EVYVPT---VFENYVADI----------------EVDSKQVE 54 (192)
Q Consensus 6 ~~i~v~G~~~~GKSsli~~l~~~~~~------------~~~~~~---~~~~~~~~~----------------~~~~~~~~ 54 (192)
.++-|+.+...|||||...|....-. ++..-. ..+..+..+ .-+..+..
T Consensus 20 RNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~~FL 99 (842)
T KOG0469|consen 20 RNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGNGFL 99 (842)
T ss_pred ccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCccee
Confidence 46788999999999999888653211 110000 000000000 11345678
Q ss_pred EEEEeCCCCCcccccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeeccccc
Q psy4710 55 LALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLR 122 (192)
Q Consensus 55 ~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 122 (192)
+.++|.|||.+|.+.....++-.|++++|+|..+.-..+.- ..+.+.+.+ .+.-++++||+|..
T Consensus 100 iNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTE-TVLrQA~~E---RIkPvlv~NK~DRA 163 (842)
T KOG0469|consen 100 INLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTE-TVLRQAIAE---RIKPVLVMNKMDRA 163 (842)
T ss_pred EEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechH-HHHHHHHHh---hccceEEeehhhHH
Confidence 99999999999999999999999999999999887655543 234444443 45668899999974
No 396
>KOG1533|consensus
Probab=98.20 E-value=2.5e-06 Score=59.49 Aligned_cols=121 Identities=15% Similarity=0.169 Sum_probs=61.2
Q ss_pred EEEEEEeCCCCCcccccc------cccCCCCCEEEEEEECC------ChhhhhchhhhhHHHHhhh-CCCCcEEEEeecc
Q psy4710 53 VELALWDTAGQEDYDRLR------PLSYPDTDVILMCFSID------SPDSLENIPEKWTPEVKHF-CPNVPIILVGNKK 119 (192)
Q Consensus 53 ~~~~l~D~~g~~~~~~~~------~~~~~~~~~~i~v~d~~------~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~ 119 (192)
-...++|+|||.++.... -..++..+.-+.+++.. ++..+-.. ++-.+... .-..|-|=|+.|+
T Consensus 97 ~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS~---lL~sl~tMl~melphVNvlSK~ 173 (290)
T KOG1533|consen 97 DHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFISS---LLVSLATMLHMELPHVNVLSKA 173 (290)
T ss_pred CcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHHHH---HHHHHHHHHhhcccchhhhhHh
Confidence 467899999986532211 11233455555555544 34443332 22122211 1378999999999
Q ss_pred cccCCccch----------hhhh------hccCC----CCCHHHHHHHHHHcCCceEEEeccCCcCCHHHHHHHHHH
Q psy4710 120 DLRNDPNTI----------KELN------KMKQE----PVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFETATR 176 (192)
Q Consensus 120 D~~~~~~~~----------~~~~------~~~~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~ 176 (192)
|+...-... ..+. +..++ ....++.-++.+.++-+.|...+..+.+.+-.+...|-+
T Consensus 174 Dl~~~ygkl~f~ld~yt~v~Dl~yL~~~ld~dp~~~kYrkLne~ic~~IeD~~LVSF~~L~v~nkeSml~l~~~IDk 250 (290)
T KOG1533|consen 174 DLLKKYGKLPFNLDFYTEVQDLSYLEDLLDVDPRLRKYRKLNEAICELIEDFNLVSFEVLDVDNKESMLRLQQTIDK 250 (290)
T ss_pred HHHHhhcccccccchhhhhhhHHHHHHHhccChhhhHHHHHHHHHHHHHhccCceeeEEeeccCHHHHHHHHHHHHh
Confidence 997654411 1111 11111 111233334445555556666666666666666655543
No 397
>KOG3859|consensus
Probab=98.19 E-value=3.4e-06 Score=60.29 Aligned_cols=117 Identities=21% Similarity=0.282 Sum_probs=73.1
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeE-----EEEECCeEEEEEEEeCCCCCc-------ccccc-
Q psy4710 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-----DIEVDSKQVELALWDTAGQED-------YDRLR- 70 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~D~~g~~~-------~~~~~- 70 (192)
..++|+.+|..|.|||||+..|++-.+...+.+........ ...-.+-..+++++||.|.-+ |..+.
T Consensus 41 F~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~iVd 120 (406)
T KOG3859|consen 41 FCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPIVD 120 (406)
T ss_pred ceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccchHHH
Confidence 46899999999999999999999988877654443332211 112235567899999999211 11000
Q ss_pred ------c-------------ccCC--CCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCC
Q psy4710 71 ------P-------------LSYP--DTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRND 124 (192)
Q Consensus 71 ------~-------------~~~~--~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 124 (192)
. ..+. ..+++++.+..+. .++..++-..+..+.. ...+|=++-|.|....
T Consensus 121 yidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTG-H~LKslDLvtmk~Lds---kVNIIPvIAKaDtisK 191 (406)
T KOG3859|consen 121 YIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTG-HSLKSLDLVTMKKLDS---KVNIIPVIAKADTISK 191 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCC-cchhHHHHHHHHHHhh---hhhhHHHHHHhhhhhH
Confidence 0 0111 3567777776664 5666665444444443 5677777788887653
No 398
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=98.17 E-value=4.8e-06 Score=44.90 Aligned_cols=44 Identities=34% Similarity=0.397 Sum_probs=29.7
Q ss_pred CCCEEEEEEECCChh--hhhchhhhhHHHHhhhCCCCcEEEEeeccc
Q psy4710 76 DTDVILMCFSIDSPD--SLENIPEKWTPEVKHFCPNVPIILVGNKKD 120 (192)
Q Consensus 76 ~~~~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 120 (192)
-.++++|++|.+... +++.. -.+...++..+++.|+++|+||+|
T Consensus 13 L~~~ilfi~D~Se~CGysie~Q-~~L~~~ik~~F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 13 LADAILFIIDPSEQCGYSIEEQ-LSLFKEIKPLFPNKPVIVVLNKID 58 (58)
T ss_dssp T-SEEEEEE-TT-TTSS-HHHH-HHHHHHHHHHTTTS-EEEEE--TT
T ss_pred hcceEEEEEcCCCCCCCCHHHH-HHHHHHHHHHcCCCCEEEEEeccC
Confidence 468999999999854 34443 257788888889999999999998
No 399
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.17 E-value=6.1e-06 Score=62.53 Aligned_cols=23 Identities=22% Similarity=0.362 Sum_probs=20.2
Q ss_pred ceeEEEEcCCCCchhHHHHHHhh
Q psy4710 5 RKKLVIVGDGACGKTCLLIVFSK 27 (192)
Q Consensus 5 ~~~i~v~G~~~~GKSsli~~l~~ 27 (192)
+..|+++|+.|+||||++..|..
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~ 263 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAW 263 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHH
Confidence 35799999999999999988864
No 400
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.17 E-value=1.5e-05 Score=62.67 Aligned_cols=161 Identities=13% Similarity=0.131 Sum_probs=79.5
Q ss_pred eeEEEEcCCCCchhHHHHHHhhCCCC------------CcccCce-------eeeeeEEEEE------------CCeEEE
Q psy4710 6 KKLVIVGDGACGKTCLLIVFSKDQFP------------EVYVPTV-------FENYVADIEV------------DSKQVE 54 (192)
Q Consensus 6 ~~i~v~G~~~~GKSsli~~l~~~~~~------------~~~~~~~-------~~~~~~~~~~------------~~~~~~ 54 (192)
-.|+++|+.|+||||++.+|...... +.+.... .......+.. ......
T Consensus 351 ~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~~~D 430 (559)
T PRK12727 351 GVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLRDYK 430 (559)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhccCC
Confidence 47889999999999999887642110 0000000 0000000110 113467
Q ss_pred EEEEeCCCCCccccccc------ccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccch
Q psy4710 55 LALWDTAGQEDYDRLRP------LSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTI 128 (192)
Q Consensus 55 ~~l~D~~g~~~~~~~~~------~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~ 128 (192)
+.|+||+|......... .... ....++|++.+.. ...+ ...++.+....+.-+|+||.|....
T Consensus 431 LVLIDTaG~s~~D~~l~eeL~~L~aa~-~~a~lLVLpAtss--~~Dl----~eii~~f~~~~~~gvILTKlDEt~~---- 499 (559)
T PRK12727 431 LVLIDTAGMGQRDRALAAQLNWLRAAR-QVTSLLVLPANAH--FSDL----DEVVRRFAHAKPQGVVLTKLDETGR---- 499 (559)
T ss_pred EEEecCCCcchhhHHHHHHHHHHHHhh-cCCcEEEEECCCC--hhHH----HHHHHHHHhhCCeEEEEecCcCccc----
Confidence 89999999643221100 0111 2345677776642 2222 2222222223577899999996441
Q ss_pred hhhhhccCCCCCHHHHHHHHHHcCCceEEEeccCC--cCCHHHH-HHHHHHHHhhhccccccccc
Q psy4710 129 KELNKMKQEPVKPEEGRAMAQKINAFAYLECSAKS--KEGVREV-FETATRAALQVKKKKKGRCR 190 (192)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~--~~gi~~~-~~~i~~~~~~~~~~~~~~c~ 190 (192)
...........+ .|+..++.-. .+++... -..+++.+...++.....|.
T Consensus 500 ------------lG~aLsv~~~~~-LPI~yvt~GQ~VPeDL~~A~~~~Lv~r~~~l~~~~~~~~~ 551 (559)
T PRK12727 500 ------------FGSALSVVVDHQ-MPITWVTDGQRVPDDLHRANAASLVLRLEDLRRAADKPCT 551 (559)
T ss_pred ------------hhHHHHHHHHhC-CCEEEEeCCCCchhhhhcCCHHHHHHHHHHHHhhccCCCC
Confidence 233334444444 4655554422 2233221 23366666666666666663
No 401
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.12 E-value=6.5e-07 Score=62.05 Aligned_cols=64 Identities=20% Similarity=0.099 Sum_probs=35.9
Q ss_pred EEEEEEeCCCCCcccccc-------cccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccC
Q psy4710 53 VELALWDTAGQEDYDRLR-------PLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN 123 (192)
Q Consensus 53 ~~~~l~D~~g~~~~~~~~-------~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 123 (192)
+.+.++||||........ .... ..+-+++|++++... +.+. ........ -.+--+++||.|...
T Consensus 84 ~D~vlIDT~Gr~~~d~~~~~el~~~~~~~-~~~~~~LVlsa~~~~--~~~~-~~~~~~~~---~~~~~lIlTKlDet~ 154 (196)
T PF00448_consen 84 YDLVLIDTAGRSPRDEELLEELKKLLEAL-NPDEVHLVLSATMGQ--EDLE-QALAFYEA---FGIDGLILTKLDETA 154 (196)
T ss_dssp SSEEEEEE-SSSSTHHHHHHHHHHHHHHH-SSSEEEEEEEGGGGG--HHHH-HHHHHHHH---SSTCEEEEESTTSSS
T ss_pred CCEEEEecCCcchhhHHHHHHHHHHhhhc-CCccceEEEecccCh--HHHH-HHHHHhhc---ccCceEEEEeecCCC
Confidence 568999999965533211 1111 567889999988753 2221 22222222 123467899999654
No 402
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.12 E-value=2.6e-05 Score=59.07 Aligned_cols=23 Identities=17% Similarity=0.264 Sum_probs=20.1
Q ss_pred eeEEEEcCCCCchhHHHHHHhhC
Q psy4710 6 KKLVIVGDGACGKTCLLIVFSKD 28 (192)
Q Consensus 6 ~~i~v~G~~~~GKSsli~~l~~~ 28 (192)
-.++++|++|+||||++.+|...
T Consensus 138 ~ii~lvGptGvGKTTtiakLA~~ 160 (374)
T PRK14722 138 GVFALMGPTGVGKTTTTAKLAAR 160 (374)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999998753
No 403
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=98.11 E-value=9.6e-06 Score=53.69 Aligned_cols=58 Identities=17% Similarity=0.182 Sum_probs=35.3
Q ss_pred EEEEEEEeCCCCCcccccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeeccc
Q psy4710 52 QVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 120 (192)
Q Consensus 52 ~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 120 (192)
++.+.++||+|... ....++..+|.++++....-.+.+.-.+ + ..+ ..--++++||.|
T Consensus 91 ~~D~iiIDtaG~~~---~~~~~~~~Ad~~ivv~tpe~~D~y~~~k--~-~~~-----~~~~~~~~~k~~ 148 (148)
T cd03114 91 GFDVIIVETVGVGQ---SEVDIASMADTTVVVMAPGAGDDIQAIK--A-GIM-----EIADIVVVNKAD 148 (148)
T ss_pred CCCEEEEECCccCh---hhhhHHHhCCEEEEEECCCchhHHHHhh--h-hHh-----hhcCEEEEeCCC
Confidence 46789999988542 2234777889888887665332222221 1 111 234489999987
No 404
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=98.07 E-value=6.4e-06 Score=63.71 Aligned_cols=64 Identities=17% Similarity=0.135 Sum_probs=37.6
Q ss_pred EEEEEEeCCCCCcccccc------cccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCc-EEEEeecccccC
Q psy4710 53 VELALWDTAGQEDYDRLR------PLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVP-IILVGNKKDLRN 123 (192)
Q Consensus 53 ~~~~l~D~~g~~~~~~~~------~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~ 123 (192)
..+.++||||........ ......+|.+++|+|++... +. ......+.+..+ .-+|+||.|...
T Consensus 176 ~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq---~a----v~~a~~F~~~l~i~gvIlTKlD~~a 246 (437)
T PRK00771 176 ADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ---QA----KNQAKAFHEAVGIGGIIITKLDGTA 246 (437)
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH---HH----HHHHHHHHhcCCCCEEEEecccCCC
Confidence 378999999965532211 11233678999999987642 11 122222222233 368889999754
No 405
>PRK10867 signal recognition particle protein; Provisional
Probab=98.05 E-value=7.6e-06 Score=63.20 Aligned_cols=22 Identities=23% Similarity=0.253 Sum_probs=18.4
Q ss_pred ceeEEEEcCCCCchhHHHHHHh
Q psy4710 5 RKKLVIVGDGACGKTCLLIVFS 26 (192)
Q Consensus 5 ~~~i~v~G~~~~GKSsli~~l~ 26 (192)
+.-|+++|++|+||||++..|.
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA 121 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLA 121 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHH
Confidence 5678999999999999776654
No 406
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.03 E-value=4.4e-05 Score=58.77 Aligned_cols=22 Identities=18% Similarity=0.273 Sum_probs=19.8
Q ss_pred eeEEEEcCCCCchhHHHHHHhh
Q psy4710 6 KKLVIVGDGACGKTCLLIVFSK 27 (192)
Q Consensus 6 ~~i~v~G~~~~GKSsli~~l~~ 27 (192)
-.|+++|+.|+||||++..|.+
T Consensus 192 ~vi~lvGpnG~GKTTtlakLA~ 213 (420)
T PRK14721 192 GVYALIGPTGVGKTTTTAKLAA 213 (420)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998865
No 407
>KOG2484|consensus
Probab=98.02 E-value=5.2e-06 Score=62.07 Aligned_cols=57 Identities=16% Similarity=0.251 Sum_probs=42.0
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCC
Q psy4710 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQ 63 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~ 63 (192)
..+++.|+|-|++||||+||+|...........++.+.....+..+ -.+.|.|.||.
T Consensus 251 ~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT~smqeV~Ld---k~i~llDsPgi 307 (435)
T KOG2484|consen 251 TSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVTRSMQEVKLD---KKIRLLDSPGI 307 (435)
T ss_pred cceEeeeecCCCCChhHHHHHHHHhccccCCCCccchhhhhheecc---CCceeccCCce
Confidence 5789999999999999999999998765444334444444444433 36899999993
No 408
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=98.02 E-value=4.2e-06 Score=57.22 Aligned_cols=67 Identities=28% Similarity=0.317 Sum_probs=38.8
Q ss_pred EEEEEEEeCCCCCccccc------ccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCC
Q psy4710 52 QVELALWDTAGQEDYDRL------RPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRND 124 (192)
Q Consensus 52 ~~~~~l~D~~g~~~~~~~------~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 124 (192)
.....++++.|...-... .... -..+.++.|+|+.+-.........+...+. .--+|++||+|+.+.
T Consensus 84 ~~d~IiIE~sG~a~p~~l~~~~~~~~~~-~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~-----~ADvIvlnK~D~~~~ 156 (178)
T PF02492_consen 84 RPDRIIIETSGLADPAPLILQDPPLKED-FRLDSIITVVDATNFDELENIPELLREQIA-----FADVIVLNKIDLVSD 156 (178)
T ss_dssp C-SEEEEEEECSSGGGGHHHHSHHHHHH-ESESEEEEEEEGTTHGGHTTHCHHHHHHHC-----T-SEEEEE-GGGHHH
T ss_pred CcCEEEECCccccccchhhhcccccccc-ccccceeEEeccccccccccchhhhhhcch-----hcCEEEEeccccCCh
Confidence 345677788884333322 0001 145889999999875444444444444443 334899999999873
No 409
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.01 E-value=2.8e-05 Score=63.73 Aligned_cols=22 Identities=27% Similarity=0.350 Sum_probs=19.4
Q ss_pred eEEEEcCCCCchhHHHHHHhhC
Q psy4710 7 KLVIVGDGACGKTCLLIVFSKD 28 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~~ 28 (192)
-|+++|+.|+||||++.+|...
T Consensus 187 Vi~lVGpnGvGKTTTiaKLA~~ 208 (767)
T PRK14723 187 VLALVGPTGVGKTTTTAKLAAR 208 (767)
T ss_pred EEEEECCCCCcHHHHHHHHHhh
Confidence 5799999999999999888753
No 410
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.01 E-value=6.8e-05 Score=54.72 Aligned_cols=92 Identities=22% Similarity=0.252 Sum_probs=62.3
Q ss_pred cCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCCCCCHHHHHHHHHHcC
Q psy4710 73 SYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQEPVKPEEGRAMAQKIN 152 (192)
Q Consensus 73 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (192)
..-+.|-.++++.+.+|+--..+.+.++-..... ++..+|++||+|+..+.+ ....+.......++
T Consensus 76 ~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~~--gi~pvIvlnK~DL~~~~~------------~~~~~~~~~y~~~g 141 (301)
T COG1162 76 PVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEAG--GIEPVIVLNKIDLLDDEE------------AAVKELLREYEDIG 141 (301)
T ss_pred cccccceEEEEEeccCCCCCHHHHHHHHHHHHHc--CCcEEEEEEccccCcchH------------HHHHHHHHHHHhCC
Confidence 3446788888888888753333323444444433 788899999999987422 11123344555566
Q ss_pred CceEEEeccCCcCCHHHHHHHHHHHHh
Q psy4710 153 AFAYLECSAKSKEGVREVFETATRAAL 179 (192)
Q Consensus 153 ~~~~~~~Sa~~~~gi~~~~~~i~~~~~ 179 (192)
++++.+|+++++|++++...+...+.
T Consensus 142 -y~v~~~s~~~~~~~~~l~~~l~~~~s 167 (301)
T COG1162 142 -YPVLFVSAKNGDGLEELAELLAGKIT 167 (301)
T ss_pred -eeEEEecCcCcccHHHHHHHhcCCeE
Confidence 78999999999999999998876543
No 411
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=97.99 E-value=0.00011 Score=54.71 Aligned_cols=23 Identities=35% Similarity=0.264 Sum_probs=19.7
Q ss_pred EEEEcCCCCchhHHHHHHhhCCC
Q psy4710 8 LVIVGDGACGKTCLLIVFSKDQF 30 (192)
Q Consensus 8 i~v~G~~~~GKSsli~~l~~~~~ 30 (192)
.++-|--|||||||++.++....
T Consensus 4 tvitGFLGsGKTTlL~~lL~~~~ 26 (323)
T COG0523 4 TVITGFLGSGKTTLLNHLLANRD 26 (323)
T ss_pred EEEeecCCCCHHHHHHHHHhccC
Confidence 57889999999999999987543
No 412
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.98 E-value=5.7e-05 Score=57.21 Aligned_cols=112 Identities=19% Similarity=0.259 Sum_probs=60.1
Q ss_pred ceeEEEEcCCCCchhHHHHHHhhCCC--CCcccCc--eeeeeeEE---------------E--EE----------CCeEE
Q psy4710 5 RKKLVIVGDGACGKTCLLIVFSKDQF--PEVYVPT--VFENYVAD---------------I--EV----------DSKQV 53 (192)
Q Consensus 5 ~~~i~v~G~~~~GKSsli~~l~~~~~--~~~~~~~--~~~~~~~~---------------~--~~----------~~~~~ 53 (192)
.-.|+++||.|+||||.+.+|..... .....-. +++++... + .. .....
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~ 282 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC 282 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC
Confidence 34689999999999999988765433 1111111 11111110 0 00 12334
Q ss_pred EEEEEeCCCCCcccccccc----cCC--CCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcE-EEEeecccccC
Q psy4710 54 ELALWDTAGQEDYDRLRPL----SYP--DTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPI-ILVGNKKDLRN 123 (192)
Q Consensus 54 ~~~l~D~~g~~~~~~~~~~----~~~--~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~-ivv~nK~D~~~ 123 (192)
.+.++||.|...+...... ++. ...-..+|++++.. ...+. ..+..++ ..|+ -+++||.|-..
T Consensus 283 d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K--~~dlk-ei~~~f~----~~~i~~~I~TKlDET~ 352 (407)
T COG1419 283 DVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK--YEDLK-EIIKQFS----LFPIDGLIFTKLDETT 352 (407)
T ss_pred CEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc--hHHHH-HHHHHhc----cCCcceeEEEcccccC
Confidence 7899999997665432211 111 23445666777654 33332 2333333 3444 68999999654
No 413
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=97.96 E-value=3.5e-05 Score=52.31 Aligned_cols=44 Identities=30% Similarity=0.239 Sum_probs=29.5
Q ss_pred CEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccC
Q psy4710 78 DVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN 123 (192)
Q Consensus 78 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 123 (192)
|++++|+|+.++.+-. ...+...+.-...+.|+++|+||+|+.+
T Consensus 1 DvVl~VvDar~p~~~~--~~~i~~~~~l~~~~kp~IlVlNK~DL~~ 44 (172)
T cd04178 1 DVILEVLDARDPLGCR--CPQVEEAVLQAGGNKKLVLVLNKIDLVP 44 (172)
T ss_pred CEEEEEEECCCCCCCC--CHHHHHHHHhccCCCCEEEEEehhhcCC
Confidence 7899999998863222 2344444211112689999999999965
No 414
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.95 E-value=2.1e-05 Score=60.71 Aligned_cols=66 Identities=17% Similarity=0.039 Sum_probs=37.0
Q ss_pred EEEEEEEeCCCCCcccccccc------cCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccC
Q psy4710 52 QVELALWDTAGQEDYDRLRPL------SYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN 123 (192)
Q Consensus 52 ~~~~~l~D~~g~~~~~~~~~~------~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 123 (192)
++.+.++||||.......... ..-..+.+++|+|+...+... .....+.... ...-+|+||.|...
T Consensus 182 ~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq~~~----~~a~~f~~~v--~i~giIlTKlD~~~ 253 (428)
T TIGR00959 182 GFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQDAV----NTAKTFNERL--GLTGVVLTKLDGDA 253 (428)
T ss_pred CCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchHHHH----HHHHHHHhhC--CCCEEEEeCccCcc
Confidence 457899999996433221111 122468889999987643221 2222332211 23468899999643
No 415
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.93 E-value=2.9e-05 Score=58.69 Aligned_cols=23 Identities=22% Similarity=0.445 Sum_probs=19.5
Q ss_pred ceeEEEEcCCCCchhHHHHHHhh
Q psy4710 5 RKKLVIVGDGACGKTCLLIVFSK 27 (192)
Q Consensus 5 ~~~i~v~G~~~~GKSsli~~l~~ 27 (192)
.-.++++|+.|+||||++.++..
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~ 228 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGW 228 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34578999999999999988764
No 416
>KOG4273|consensus
Probab=97.90 E-value=0.00042 Score=49.16 Aligned_cols=173 Identities=13% Similarity=0.171 Sum_probs=97.3
Q ss_pred ceeEEEEcCCCC--chhHHHHHHhhCCCCCcccCceeeee-eEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEE
Q psy4710 5 RKKLVIVGDGAC--GKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 81 (192)
Q Consensus 5 ~~~i~v~G~~~~--GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i 81 (192)
+.-++|+|-+|+ ||-+++.+|....+.+.......+.+ .-.+...+-...+.+.-.+-.+.+.-......+...+++
T Consensus 4 rp~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hgwtid~kyysadi~lcishicde~~lpn~~~a~pl~a~v 83 (418)
T KOG4273|consen 4 RPCALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHGWTIDNKYYSADINLCISHICDEKFLPNAEIAEPLQAFV 83 (418)
T ss_pred CceEEEecccccccchHHHHHHhcchhheeeccccCceeeeceEecceeeecceeEEeecccchhccCCcccccceeeEE
Confidence 456789999998 99999999998887665433222211 111111111122333333332222222222334567899
Q ss_pred EEEECCChhhhhchhhhhHHHHhhhCCCC-cEEEEeecccccCCccc---------------hhhhhhccCCC-------
Q psy4710 82 MCFSIDSPDSLENIPEKWTPEVKHFCPNV-PIILVGNKKDLRNDPNT---------------IKELNKMKQEP------- 138 (192)
Q Consensus 82 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~-p~ivv~nK~D~~~~~~~---------------~~~~~~~~~~~------- 138 (192)
++||.+....+..+ +.|+.-..-+ .. -++.++||.|..+.--. ...+..+....
T Consensus 84 mvfdlse~s~l~al-qdwl~htdin--sfdillcignkvdrvphhlahdeyrrrl~kasdpsrdl~~di~dfgisetegs 160 (418)
T KOG4273|consen 84 MVFDLSEKSGLDAL-QDWLPHTDIN--SFDILLCIGNKVDRVPHHLAHDEYRRRLAKASDPSRDLMIDICDFGISETEGS 160 (418)
T ss_pred EEEeccchhhhHHH-Hhhccccccc--cchhheecccccccccchhhhhHHHHHHHhhcCcchhHhhhhhhccccccccc
Confidence 99999988777776 4676533221 22 23678899998642111 01111111111
Q ss_pred ----------CCHHHHHHHHHHcCCceEEEeccCCc------------CCHHHHHHHHHHHHhhh
Q psy4710 139 ----------VKPEEGRAMAQKINAFAYLECSAKSK------------EGVREVFETATRAALQV 181 (192)
Q Consensus 139 ----------~~~~~~~~~~~~~~~~~~~~~Sa~~~------------~gi~~~~~~i~~~~~~~ 181 (192)
.......+++...+ +.+++.++-+. .|++.+|..+..++...
T Consensus 161 sllgsedasldirga~lewc~e~~-~efieacasn~dfd~c~~~dgdsqgverifgal~ahmwpg 224 (418)
T KOG4273|consen 161 SLLGSEDASLDIRGAALEWCLEHG-FEFIEACASNEDFDECDDDDGDSQGVERIFGALNAHMWPG 224 (418)
T ss_pred cccccccchhhHHHHHHHHHHhcC-ceeeeecCCccccchhhccCcchhhHHHHHHHhhhccCcc
Confidence 11233446677766 68898887433 48899998888877654
No 417
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.90 E-value=0.00011 Score=57.57 Aligned_cols=21 Identities=19% Similarity=0.311 Sum_probs=19.0
Q ss_pred eEEEEcCCCCchhHHHHHHhh
Q psy4710 7 KLVIVGDGACGKTCLLIVFSK 27 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~ 27 (192)
-++++|+.|+||||++.+|..
T Consensus 258 Vi~LvGpnGvGKTTTiaKLA~ 278 (484)
T PRK06995 258 VFALMGPTGVGKTTTTAKLAA 278 (484)
T ss_pred EEEEECCCCccHHHHHHHHHH
Confidence 489999999999999988875
No 418
>PRK13695 putative NTPase; Provisional
Probab=97.89 E-value=0.00039 Score=47.36 Aligned_cols=23 Identities=30% Similarity=0.408 Sum_probs=20.0
Q ss_pred eeEEEEcCCCCchhHHHHHHhhC
Q psy4710 6 KKLVIVGDGACGKTCLLIVFSKD 28 (192)
Q Consensus 6 ~~i~v~G~~~~GKSsli~~l~~~ 28 (192)
++|++.|++|+|||||+..+.+.
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999999986543
No 419
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.86 E-value=1.3e-05 Score=54.74 Aligned_cols=23 Identities=26% Similarity=0.488 Sum_probs=21.4
Q ss_pred eeEEEEcCCCCchhHHHHHHhhC
Q psy4710 6 KKLVIVGDGACGKTCLLIVFSKD 28 (192)
Q Consensus 6 ~~i~v~G~~~~GKSsli~~l~~~ 28 (192)
.||+|+|+|||||||+..+|...
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999999999887
No 420
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.86 E-value=1.3e-05 Score=51.07 Aligned_cols=22 Identities=23% Similarity=0.391 Sum_probs=20.0
Q ss_pred eEEEEcCCCCchhHHHHHHhhC
Q psy4710 7 KLVIVGDGACGKTCLLIVFSKD 28 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~~ 28 (192)
.|+|.|++||||||+.+.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999864
No 421
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.85 E-value=2.8e-05 Score=52.88 Aligned_cols=66 Identities=14% Similarity=0.060 Sum_probs=37.4
Q ss_pred EEEEEEEeCCCCCccccccc----c--cCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccC
Q psy4710 52 QVELALWDTAGQEDYDRLRP----L--SYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN 123 (192)
Q Consensus 52 ~~~~~l~D~~g~~~~~~~~~----~--~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 123 (192)
+..+.++|+||...+..... . .....+.+++|+|.....+.. + +...+.+.. + ...+|+||.|...
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~~~---~-~~~~~~~~~-~-~~~viltk~D~~~ 153 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQDAV---N-QAKAFNEAL-G-ITGVILTKLDGDA 153 (173)
T ss_pred CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChHHH---H-HHHHHHhhC-C-CCEEEEECCcCCC
Confidence 44688899999643221111 1 112479999999986543221 1 222222222 2 3578889999765
No 422
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.83 E-value=9.3e-05 Score=63.30 Aligned_cols=110 Identities=20% Similarity=0.139 Sum_probs=59.4
Q ss_pred EEEcCCCCchhHHHHHHhhCCCCCc--ccCc----eeeeeeEEEEECCeEEEEEEEeCCCCCc--------ccccccc--
Q psy4710 9 VIVGDGACGKTCLLIVFSKDQFPEV--YVPT----VFENYVADIEVDSKQVELALWDTAGQED--------YDRLRPL-- 72 (192)
Q Consensus 9 ~v~G~~~~GKSsli~~l~~~~~~~~--~~~~----~~~~~~~~~~~~~~~~~~~l~D~~g~~~--------~~~~~~~-- 72 (192)
+|+|++|+||||++..--. .|+.. .... .++..+. -.+. -.-.++||.|... ....|..
T Consensus 129 ~viG~pgsGKTtal~~sgl-~Fpl~~~~~~~~~~~~gT~~cd-wwf~---deaVlIDtaGry~~q~s~~~~~~~~W~~fL 203 (1188)
T COG3523 129 MVIGPPGSGKTTALLNSGL-QFPLAEQMGALGLAGPGTRNCD-WWFT---DEAVLIDTAGRYITQDSADEVDRAEWLGFL 203 (1188)
T ss_pred EEecCCCCCcchHHhcccc-cCcchhhhccccccCCCCcccC-cccc---cceEEEcCCcceecccCcchhhHHHHHHHH
Confidence 7899999999999865322 22211 1000 1111110 1111 2457889998321 1222322
Q ss_pred -------cCCCCCEEEEEEECCChhhhhch---------hhhhHHHHhhhCCCCcEEEEeecccccC
Q psy4710 73 -------SYPDTDVILMCFSIDSPDSLENI---------PEKWTPEVKHFCPNVPIILVGNKKDLRN 123 (192)
Q Consensus 73 -------~~~~~~~~i~v~d~~~~~~~~~~---------~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 123 (192)
..+..+++|+.+|+.+--+.+.. ...+.++-....-..|+.|++||.|+.+
T Consensus 204 ~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~ 270 (1188)
T COG3523 204 GLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLP 270 (1188)
T ss_pred HHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEecccccc
Confidence 23468999999999764222211 1111112222234799999999999976
No 423
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.81 E-value=6.9e-05 Score=57.45 Aligned_cols=22 Identities=27% Similarity=0.394 Sum_probs=19.4
Q ss_pred eeEEEEcCCCCchhHHHHHHhh
Q psy4710 6 KKLVIVGDGACGKTCLLIVFSK 27 (192)
Q Consensus 6 ~~i~v~G~~~~GKSsli~~l~~ 27 (192)
.-++++|++||||||++.+|..
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA~ 245 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAA 245 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4588999999999999988864
No 424
>PRK08118 topology modulation protein; Reviewed
Probab=97.81 E-value=1.8e-05 Score=53.57 Aligned_cols=23 Identities=30% Similarity=0.671 Sum_probs=20.6
Q ss_pred eeEEEEcCCCCchhHHHHHHhhC
Q psy4710 6 KKLVIVGDGACGKTCLLIVFSKD 28 (192)
Q Consensus 6 ~~i~v~G~~~~GKSsli~~l~~~ 28 (192)
.||+|+|++|||||||...|...
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~ 24 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 38999999999999999988764
No 425
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.80 E-value=0.00026 Score=54.12 Aligned_cols=113 Identities=17% Similarity=0.160 Sum_probs=60.1
Q ss_pred ceeEEEEcCCCCchhHHHHHHhhCCCC--------------CcccCce-------eeeeeEEEEE------------CCe
Q psy4710 5 RKKLVIVGDGACGKTCLLIVFSKDQFP--------------EVYVPTV-------FENYVADIEV------------DSK 51 (192)
Q Consensus 5 ~~~i~v~G~~~~GKSsli~~l~~~~~~--------------~~~~~~~-------~~~~~~~~~~------------~~~ 51 (192)
+-.|+++|+.|+||||.+.++...-.. +.+.... .......+.. ...
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~~ 253 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQSK 253 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHhC
Confidence 457899999999999999887642110 0000000 0000000000 123
Q ss_pred EEEEEEEeCCCCCccccc----ccccCC---CCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccC
Q psy4710 52 QVELALWDTAGQEDYDRL----RPLSYP---DTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN 123 (192)
Q Consensus 52 ~~~~~l~D~~g~~~~~~~----~~~~~~---~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 123 (192)
++.+.++||+|....... ....+. ...-.++|+|++.. ...+ ...+..+..--+--+++||.|-..
T Consensus 254 ~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~--~~~~----~~~~~~~~~~~~~~~I~TKlDet~ 326 (388)
T PRK12723 254 DFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTK--TSDV----KEIFHQFSPFSYKTVIFTKLDETT 326 (388)
T ss_pred CCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCC--HHHH----HHHHHHhcCCCCCEEEEEeccCCC
Confidence 467899999996543211 111111 12357899998875 2222 233333322235689999999654
No 426
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.80 E-value=2.3e-05 Score=54.98 Aligned_cols=28 Identities=21% Similarity=0.251 Sum_probs=25.2
Q ss_pred CcccceeEEEEcCCCCchhHHHHHHhhC
Q psy4710 1 MAAIRKKLVIVGDGACGKTCLLIVFSKD 28 (192)
Q Consensus 1 ~~~~~~~i~v~G~~~~GKSsli~~l~~~ 28 (192)
|+.....|+|.|++|||||||.+.|.+.
T Consensus 2 ~~~~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 2 MMKKPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 6678899999999999999999998874
No 427
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=97.79 E-value=0.00032 Score=47.95 Aligned_cols=66 Identities=24% Similarity=0.288 Sum_probs=45.7
Q ss_pred eEEEEEEEeCCCCCcccccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeeccccc
Q psy4710 51 KQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLR 122 (192)
Q Consensus 51 ~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 122 (192)
..+.+.++|+|+.... .....+..+|.+++++..+. .+..... .+.+.+... +.|+.+|+||.|..
T Consensus 91 ~~~d~viiDtpp~~~~--~~~~~l~~aD~vliv~~~~~-~~~~~~~-~~~~~l~~~--~~~~~vV~N~~~~~ 156 (179)
T cd03110 91 EGAELIIIDGPPGIGC--PVIASLTGADAALLVTEPTP-SGLHDLE-RAVELVRHF--GIPVGVVINKYDLN 156 (179)
T ss_pred cCCCEEEEECcCCCcH--HHHHHHHcCCEEEEEecCCc-ccHHHHH-HHHHHHHHc--CCCEEEEEeCCCCC
Confidence 4578999999975332 23345678999999998774 3455543 455555544 67889999999854
No 428
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=97.79 E-value=0.00016 Score=50.71 Aligned_cols=62 Identities=23% Similarity=0.300 Sum_probs=40.9
Q ss_pred EEEEEeCC-CCCcccccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCC-CcEEEEeeccccc
Q psy4710 54 ELALWDTA-GQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN-VPIILVGNKKDLR 122 (192)
Q Consensus 54 ~~~l~D~~-g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~-~p~ivv~nK~D~~ 122 (192)
.+.+.||- |.+.|. +...+++|.+|.|+|.+- .++... +....+.... + .++.+|+||.|-.
T Consensus 135 e~VivDtEAGiEHfg---Rg~~~~vD~vivVvDpS~-~sl~ta-eri~~L~~el--g~k~i~~V~NKv~e~ 198 (255)
T COG3640 135 EVVIVDTEAGIEHFG---RGTIEGVDLVIVVVDPSY-KSLRTA-ERIKELAEEL--GIKRIFVVLNKVDEE 198 (255)
T ss_pred cEEEEecccchhhhc---cccccCCCEEEEEeCCcH-HHHHHH-HHHHHHHHHh--CCceEEEEEeeccch
Confidence 45555553 333332 345678999999999885 455555 3455555554 4 8999999999954
No 429
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.78 E-value=7.4e-05 Score=57.93 Aligned_cols=21 Identities=29% Similarity=0.420 Sum_probs=18.2
Q ss_pred eEEEEcCCCCchhHHHHHHhh
Q psy4710 7 KLVIVGDGACGKTCLLIVFSK 27 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~ 27 (192)
.++++|++|+||||++..|..
T Consensus 223 ~i~~vGptGvGKTTt~~kLA~ 243 (424)
T PRK05703 223 VVALVGPTGVGKTTTLAKLAA 243 (424)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999877653
No 430
>PRK07261 topology modulation protein; Provisional
Probab=97.76 E-value=2.4e-05 Score=53.16 Aligned_cols=23 Identities=30% Similarity=0.468 Sum_probs=20.4
Q ss_pred eeEEEEcCCCCchhHHHHHHhhC
Q psy4710 6 KKLVIVGDGACGKTCLLIVFSKD 28 (192)
Q Consensus 6 ~~i~v~G~~~~GKSsli~~l~~~ 28 (192)
.||+|+|++|||||||...+...
T Consensus 1 ~ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 1 MKIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 37999999999999999998754
No 431
>PRK14737 gmk guanylate kinase; Provisional
Probab=97.76 E-value=3.1e-05 Score=53.31 Aligned_cols=24 Identities=17% Similarity=0.353 Sum_probs=21.1
Q ss_pred eeEEEEcCCCCchhHHHHHHhhCC
Q psy4710 6 KKLVIVGDGACGKTCLLIVFSKDQ 29 (192)
Q Consensus 6 ~~i~v~G~~~~GKSsli~~l~~~~ 29 (192)
.=|+++|++|||||||+++|+...
T Consensus 5 ~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 5 KLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred eEEEEECCCCCCHHHHHHHHHhcC
Confidence 448999999999999999998754
No 432
>KOG2485|consensus
Probab=97.75 E-value=4.3e-05 Score=55.60 Aligned_cols=58 Identities=21% Similarity=0.293 Sum_probs=36.8
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCCCCCc------ccCceeeeeeEEEEECCeEEEEEEEeCCC
Q psy4710 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEV------YVPTVFENYVADIEVDSKQVELALWDTAG 62 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~l~D~~g 62 (192)
.++++.|+|-||+|||||+|++........ ..|..+......+.+.. .-.+.+.||||
T Consensus 142 ~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~-rp~vy~iDTPG 205 (335)
T KOG2485|consen 142 SEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISH-RPPVYLIDTPG 205 (335)
T ss_pred CceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEecc-CCceEEecCCC
Confidence 578999999999999999998765332221 12222222222233332 23589999999
No 433
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.74 E-value=3.3e-05 Score=42.72 Aligned_cols=24 Identities=25% Similarity=0.372 Sum_probs=20.0
Q ss_pred eEEEEcCCCCchhHHHHHHhhCCC
Q psy4710 7 KLVIVGDGACGKTCLLIVFSKDQF 30 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~~~~ 30 (192)
..+|.|+.||||||++.++...-+
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~L~ 48 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTVLY 48 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHc
Confidence 389999999999999998765433
No 434
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.73 E-value=9.3e-05 Score=53.81 Aligned_cols=66 Identities=20% Similarity=0.100 Sum_probs=37.1
Q ss_pred EEEEEEEeCCCCCccccc----ccccC--CCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccC
Q psy4710 52 QVELALWDTAGQEDYDRL----RPLSY--PDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN 123 (192)
Q Consensus 52 ~~~~~l~D~~g~~~~~~~----~~~~~--~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 123 (192)
...+.++||||....... +...+ -..+-.++|++++... ++ ....++.+..-.+--+++||.|...
T Consensus 154 ~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~--~d----~~~~~~~f~~~~~~~~I~TKlDet~ 225 (270)
T PRK06731 154 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--KD----MIEIITNFKDIHIDGIVFTKFDETA 225 (270)
T ss_pred CCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCH--HH----HHHHHHHhCCCCCCEEEEEeecCCC
Confidence 467899999996542211 11111 1356689999986421 11 1222222222344579999999755
No 435
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=97.71 E-value=3.2e-05 Score=52.32 Aligned_cols=24 Identities=25% Similarity=0.444 Sum_probs=21.6
Q ss_pred eeEEEEcCCCCchhHHHHHHhhCC
Q psy4710 6 KKLVIVGDGACGKTCLLIVFSKDQ 29 (192)
Q Consensus 6 ~~i~v~G~~~~GKSsli~~l~~~~ 29 (192)
.=+++.||+|+||||++++|+...
T Consensus 5 ~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 5 LLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhc
Confidence 347899999999999999999877
No 436
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.70 E-value=3.1e-05 Score=50.85 Aligned_cols=21 Identities=24% Similarity=0.463 Sum_probs=19.1
Q ss_pred EEEEcCCCCchhHHHHHHhhC
Q psy4710 8 LVIVGDGACGKTCLLIVFSKD 28 (192)
Q Consensus 8 i~v~G~~~~GKSsli~~l~~~ 28 (192)
|+++|+|||||||++..+...
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~ 22 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKR 22 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999998854
No 437
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=97.69 E-value=0.00036 Score=52.13 Aligned_cols=21 Identities=29% Similarity=0.316 Sum_probs=18.6
Q ss_pred EEEEcCCCCchhHHHHHHhhC
Q psy4710 8 LVIVGDGACGKTCLLIVFSKD 28 (192)
Q Consensus 8 i~v~G~~~~GKSsli~~l~~~ 28 (192)
.+|.|.-|||||||+|+++..
T Consensus 7 ~iltGFLGaGKTTll~~ll~~ 27 (318)
T PRK11537 7 TLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_pred EEEEECCCCCHHHHHHHHHhc
Confidence 567899999999999999864
No 438
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.66 E-value=5.1e-05 Score=43.30 Aligned_cols=22 Identities=18% Similarity=0.392 Sum_probs=19.6
Q ss_pred EEEEcCCCCchhHHHHHHhhCC
Q psy4710 8 LVIVGDGACGKTCLLIVFSKDQ 29 (192)
Q Consensus 8 i~v~G~~~~GKSsli~~l~~~~ 29 (192)
|++.|++||||||+.+++...-
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999988653
No 439
>PRK14738 gmk guanylate kinase; Provisional
Probab=97.65 E-value=6.4e-05 Score=52.65 Aligned_cols=26 Identities=23% Similarity=0.321 Sum_probs=21.9
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhCC
Q psy4710 4 IRKKLVIVGDGACGKTCLLIVFSKDQ 29 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~~ 29 (192)
...-|+|+|++|||||||+++|....
T Consensus 12 ~~~~ivi~GpsG~GK~tl~~~L~~~~ 37 (206)
T PRK14738 12 KPLLVVISGPSGVGKDAVLARMRERK 37 (206)
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhcC
Confidence 45668899999999999999997643
No 440
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.62 E-value=3.9e-05 Score=51.63 Aligned_cols=22 Identities=32% Similarity=0.561 Sum_probs=17.9
Q ss_pred eEEEEcCCCCchhHHHHHHhhC
Q psy4710 7 KLVIVGDGACGKTCLLIVFSKD 28 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~~ 28 (192)
||+|.|.+++|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 7999999999999999999866
No 441
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.61 E-value=6.6e-05 Score=52.80 Aligned_cols=24 Identities=33% Similarity=0.508 Sum_probs=20.7
Q ss_pred EEEEcCCCCchhHHHHHHhhCCCC
Q psy4710 8 LVIVGDGACGKTCLLIVFSKDQFP 31 (192)
Q Consensus 8 i~v~G~~~~GKSsli~~l~~~~~~ 31 (192)
++|+|++|||||||+|-+-+-..+
T Consensus 34 vaI~GpSGSGKSTLLniig~ld~p 57 (226)
T COG1136 34 VAIVGPSGSGKSTLLNLLGGLDKP 57 (226)
T ss_pred EEEECCCCCCHHHHHHHHhcccCC
Confidence 789999999999999988776543
No 442
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.61 E-value=7e-05 Score=51.93 Aligned_cols=26 Identities=31% Similarity=0.511 Sum_probs=22.2
Q ss_pred eEEEEcCCCCchhHHHHHHhhCCCCC
Q psy4710 7 KLVIVGDGACGKTCLLIVFSKDQFPE 32 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~~~~~~ 32 (192)
.++++||+|||||||+..+.+-..++
T Consensus 30 vv~iiGpSGSGKSTlLRclN~LE~~~ 55 (240)
T COG1126 30 VVVIIGPSGSGKSTLLRCLNGLEEPD 55 (240)
T ss_pred EEEEECCCCCCHHHHHHHHHCCcCCC
Confidence 47899999999999999998776544
No 443
>KOG0780|consensus
Probab=97.60 E-value=4.6e-05 Score=57.07 Aligned_cols=97 Identities=13% Similarity=0.156 Sum_probs=54.5
Q ss_pred ceeEEEEcCCCCchhHHHHHHhhCCCCCcccC----------------------ceeeeeeE-----E--------EEEC
Q psy4710 5 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVP----------------------TVFENYVA-----D--------IEVD 49 (192)
Q Consensus 5 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~----------------------~~~~~~~~-----~--------~~~~ 49 (192)
+--|.++|..|+||||.+.+|........+.. ...+.+.. . -.+.
T Consensus 101 psVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~fK 180 (483)
T KOG0780|consen 101 PSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDRFK 180 (483)
T ss_pred CcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHHHH
Confidence 34588999999999999977654211111100 00111100 0 0123
Q ss_pred CeEEEEEEEeCCCCCccc-----ccc-cccCCCCCEEEEEEECCChhhhhchhhhhHH
Q psy4710 50 SKQVELALWDTAGQEDYD-----RLR-PLSYPDTDVILMCFSIDSPDSLENIPEKWTP 101 (192)
Q Consensus 50 ~~~~~~~l~D~~g~~~~~-----~~~-~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~ 101 (192)
.+++.+.++||+|..... ... ..-.-..|-+|+|+|++-.++-......+..
T Consensus 181 ke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~aFk~ 238 (483)
T KOG0780|consen 181 KENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQARAFKE 238 (483)
T ss_pred hcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHHHHHH
Confidence 566789999999953321 111 1122357999999999887655444334443
No 444
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=97.59 E-value=0.00039 Score=42.09 Aligned_cols=69 Identities=20% Similarity=0.239 Sum_probs=44.6
Q ss_pred EEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCccccc-ccccCCCCCEEEEEEEC
Q psy4710 8 LVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRL-RPLSYPDTDVILMCFSI 86 (192)
Q Consensus 8 i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~-~~~~~~~~~~~i~v~d~ 86 (192)
+++.|..|+||||+...+...-..... +...++ .+.++|+++....... .......+|.++++++.
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~---------~v~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~~ 68 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGK---------RVLLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTTP 68 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCC---------eEEEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecCC
Confidence 678899999999999887654321111 111122 7899999986443321 13455678999999876
Q ss_pred CCh
Q psy4710 87 DSP 89 (192)
Q Consensus 87 ~~~ 89 (192)
...
T Consensus 69 ~~~ 71 (99)
T cd01983 69 EAL 71 (99)
T ss_pred chh
Confidence 653
No 445
>PRK14530 adenylate kinase; Provisional
Probab=97.58 E-value=6.4e-05 Score=53.01 Aligned_cols=23 Identities=13% Similarity=0.339 Sum_probs=20.5
Q ss_pred ceeEEEEcCCCCchhHHHHHHhh
Q psy4710 5 RKKLVIVGDGACGKTCLLIVFSK 27 (192)
Q Consensus 5 ~~~i~v~G~~~~GKSsli~~l~~ 27 (192)
..+|+|+|+|||||||+.+.|..
T Consensus 3 ~~~I~i~G~pGsGKsT~~~~La~ 25 (215)
T PRK14530 3 QPRILLLGAPGAGKGTQSSNLAE 25 (215)
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999998864
No 446
>KOG2423|consensus
Probab=97.57 E-value=6.9e-05 Score=56.37 Aligned_cols=85 Identities=12% Similarity=0.107 Sum_probs=0.0
Q ss_pred cccceeEEEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCC--CCcccccccccCCCCCE
Q psy4710 2 AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAG--QEDYDRLRPLSYPDTDV 79 (192)
Q Consensus 2 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g--~~~~~~~~~~~~~~~~~ 79 (192)
+...+-|.++|.||+||||++|.|-...+.....-++.+... .+---...+-++|+|| -..-.+.....+ -+
T Consensus 304 dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGETKVW---QYItLmkrIfLIDcPGvVyps~dset~ivL---kG 377 (572)
T KOG2423|consen 304 DKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGETKVW---QYITLMKRIFLIDCPGVVYPSSDSETDIVL---KG 377 (572)
T ss_pred CccceeeeeecCCCCchHHHHHHHhhcccccccCCCCcchHH---HHHHHHhceeEecCCCccCCCCCchHHHHh---hc
Q ss_pred EEEEEECCChhhh
Q psy4710 80 ILMCFSIDSPDSL 92 (192)
Q Consensus 80 ~i~v~d~~~~~~~ 92 (192)
++=|=++.+++..
T Consensus 378 vVRVenv~~pe~y 390 (572)
T KOG2423|consen 378 VVRVENVKNPEDY 390 (572)
T ss_pred eeeeeecCCHHHH
No 447
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.54 E-value=7.9e-05 Score=53.01 Aligned_cols=27 Identities=26% Similarity=0.305 Sum_probs=23.5
Q ss_pred ccceeEEEEcCCCCchhHHHHHHhhCC
Q psy4710 3 AIRKKLVIVGDGACGKTCLLIVFSKDQ 29 (192)
Q Consensus 3 ~~~~~i~v~G~~~~GKSsli~~l~~~~ 29 (192)
..++|++|+|++|||||+|+..++...
T Consensus 11 ~~~fr~viIG~sGSGKT~li~~lL~~~ 37 (241)
T PF04665_consen 11 KDPFRMVIIGKSGSGKTTLIKSLLYYL 37 (241)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhh
Confidence 457899999999999999999988653
No 448
>KOG3347|consensus
Probab=97.54 E-value=7.2e-05 Score=48.72 Aligned_cols=25 Identities=20% Similarity=0.368 Sum_probs=22.6
Q ss_pred ccceeEEEEcCCCCchhHHHHHHhh
Q psy4710 3 AIRKKLVIVGDGACGKTCLLIVFSK 27 (192)
Q Consensus 3 ~~~~~i~v~G~~~~GKSsli~~l~~ 27 (192)
+...+|+|.|.||+|||||..++..
T Consensus 5 r~~PNILvtGTPG~GKstl~~~lae 29 (176)
T KOG3347|consen 5 RERPNILVTGTPGTGKSTLAERLAE 29 (176)
T ss_pred hcCCCEEEeCCCCCCchhHHHHHHH
Confidence 4678999999999999999999874
No 449
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.53 E-value=0.0001 Score=52.27 Aligned_cols=25 Identities=32% Similarity=0.628 Sum_probs=21.4
Q ss_pred EEEEcCCCCchhHHHHHHhhCCCCC
Q psy4710 8 LVIVGDGACGKTCLLIVFSKDQFPE 32 (192)
Q Consensus 8 i~v~G~~~~GKSsli~~l~~~~~~~ 32 (192)
|+++|++|||||||++.+.+-..+.
T Consensus 32 vsilGpSGcGKSTLLriiAGL~~p~ 56 (248)
T COG1116 32 VAILGPSGCGKSTLLRLIAGLEKPT 56 (248)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCC
Confidence 7899999999999999998865433
No 450
>PRK14531 adenylate kinase; Provisional
Probab=97.52 E-value=8.9e-05 Score=50.94 Aligned_cols=24 Identities=17% Similarity=0.346 Sum_probs=21.0
Q ss_pred ceeEEEEcCCCCchhHHHHHHhhC
Q psy4710 5 RKKLVIVGDGACGKTCLLIVFSKD 28 (192)
Q Consensus 5 ~~~i~v~G~~~~GKSsli~~l~~~ 28 (192)
+.+|+++|+|||||||+...+...
T Consensus 2 ~~~i~i~G~pGsGKsT~~~~la~~ 25 (183)
T PRK14531 2 KQRLLFLGPPGAGKGTQAARLCAA 25 (183)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999988654
No 451
>PRK01889 GTPase RsgA; Reviewed
Probab=97.51 E-value=0.00011 Score=55.79 Aligned_cols=26 Identities=19% Similarity=0.447 Sum_probs=22.4
Q ss_pred eeEEEEcCCCCchhHHHHHHhhCCCC
Q psy4710 6 KKLVIVGDGACGKTCLLIVFSKDQFP 31 (192)
Q Consensus 6 ~~i~v~G~~~~GKSsli~~l~~~~~~ 31 (192)
-+++++|.+|+|||||+|.+.+....
T Consensus 196 ~~~~lvG~sgvGKStLin~L~g~~~~ 221 (356)
T PRK01889 196 KTVALLGSSGVGKSTLVNALLGEEVQ 221 (356)
T ss_pred CEEEEECCCCccHHHHHHHHHHhccc
Confidence 37899999999999999999975543
No 452
>PRK06217 hypothetical protein; Validated
Probab=97.51 E-value=9e-05 Score=50.93 Aligned_cols=23 Identities=22% Similarity=0.364 Sum_probs=20.8
Q ss_pred eeEEEEcCCCCchhHHHHHHhhC
Q psy4710 6 KKLVIVGDGACGKTCLLIVFSKD 28 (192)
Q Consensus 6 ~~i~v~G~~~~GKSsli~~l~~~ 28 (192)
.+|+|+|.+||||||+..+|...
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999998864
No 453
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.51 E-value=0.00021 Score=46.80 Aligned_cols=106 Identities=11% Similarity=0.076 Sum_probs=59.8
Q ss_pred EEEcCCCCchhHHHHHHhhCCCCCcccCceeeeeeEEEEECCeEEEEEEEeCCCCCcccccccccCCCCCEEEEEEECCC
Q psy4710 9 VIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDSKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDS 88 (192)
Q Consensus 9 ~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~ 88 (192)
+.-|..|+||||+...+...-.......-..+-.. ....-.+.+.++|+|+... ......+..+|.++++.+.+.
T Consensus 4 ~~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~---~~~~~~yd~VIiD~p~~~~--~~~~~~l~~aD~vviv~~~~~ 78 (139)
T cd02038 4 VTSGKGGVGKTNISANLALALAKLGKRVLLLDADL---GLANLDYDYIIIDTGAGIS--DNVLDFFLAADEVIVVTTPEP 78 (139)
T ss_pred EEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEECCC---CCCCCCCCEEEEECCCCCC--HHHHHHHHhCCeEEEEcCCCh
Confidence 34578899999998665542111110000000000 0000116789999998532 233456788999999988764
Q ss_pred hhhhhchhhhhHHHHhhhCCCCcEEEEeecccc
Q psy4710 89 PDSLENIPEKWTPEVKHFCPNVPIILVGNKKDL 121 (192)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~ 121 (192)
.++.... ..++.+.......++.+++|+.+.
T Consensus 79 -~s~~~~~-~~l~~l~~~~~~~~~~lVvN~~~~ 109 (139)
T cd02038 79 -TSITDAY-ALIKKLAKQLRVLNFRVVVNRAES 109 (139)
T ss_pred -hHHHHHH-HHHHHHHHhcCCCCEEEEEeCCCC
Confidence 4444442 333444333346788899999974
No 454
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.50 E-value=7e-05 Score=57.04 Aligned_cols=92 Identities=17% Similarity=0.174 Sum_probs=51.6
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhC----CC------CCcccCce------------eeeeeE-----EE--------EE
Q psy4710 4 IRKKLVIVGDGACGKTCLLIVFSKD----QF------PEVYVPTV------------FENYVA-----DI--------EV 48 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~----~~------~~~~~~~~------------~~~~~~-----~~--------~~ 48 (192)
.+..|+++|..||||||.+.+|... .. .+.+.|.- .+.+.. .+ ..
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~~a 178 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALEKA 178 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHHHH
Confidence 3667999999999999999776431 00 11111110 000000 00 01
Q ss_pred CCeEEEEEEEeCCCCCcccccc------cccCCCCCEEEEEEECCChhhhhch
Q psy4710 49 DSKQVELALWDTAGQEDYDRLR------PLSYPDTDVILMCFSIDSPDSLENI 95 (192)
Q Consensus 49 ~~~~~~~~l~D~~g~~~~~~~~------~~~~~~~~~~i~v~d~~~~~~~~~~ 95 (192)
....+.+.++||+|........ ....-+.|=+++|+|+.-.+.-.+.
T Consensus 179 k~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~ 231 (451)
T COG0541 179 KEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNT 231 (451)
T ss_pred HHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHH
Confidence 1233578999999964433221 1122367889999999887544443
No 455
>PRK00300 gmk guanylate kinase; Provisional
Probab=97.49 E-value=0.00012 Score=51.27 Aligned_cols=29 Identities=21% Similarity=0.312 Sum_probs=24.5
Q ss_pred CcccceeEEEEcCCCCchhHHHHHHhhCC
Q psy4710 1 MAAIRKKLVIVGDGACGKTCLLIVFSKDQ 29 (192)
Q Consensus 1 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~ 29 (192)
|+...--|+++|++|||||||++.+.+..
T Consensus 1 ~~~~g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 1 MMRRGLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 55566679999999999999999988753
No 456
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.49 E-value=9.4e-05 Score=48.17 Aligned_cols=24 Identities=29% Similarity=0.328 Sum_probs=21.4
Q ss_pred eEEEEcCCCCchhHHHHHHhhCCC
Q psy4710 7 KLVIVGDGACGKTCLLIVFSKDQF 30 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~~~~ 30 (192)
.++|+|+.|+|||||++.+.+...
T Consensus 13 ~~~i~G~nGsGKStLl~~l~g~~~ 36 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKALAGLLP 36 (137)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSSH
T ss_pred EEEEEccCCCccccceeeeccccc
Confidence 589999999999999999988754
No 457
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=97.46 E-value=0.00011 Score=49.65 Aligned_cols=25 Identities=28% Similarity=0.458 Sum_probs=21.4
Q ss_pred eEEEEcCCCCchhHHHHHHhhCCCC
Q psy4710 7 KLVIVGDGACGKTCLLIVFSKDQFP 31 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~~~~~ 31 (192)
.++|+|++|+|||||+|-+.+=..+
T Consensus 27 ~vAi~GpSGaGKSTLLnLIAGF~~P 51 (231)
T COG3840 27 IVAILGPSGAGKSTLLNLIAGFETP 51 (231)
T ss_pred EEEEECCCCccHHHHHHHHHhccCC
Confidence 6899999999999999988775443
No 458
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.45 E-value=0.00012 Score=47.89 Aligned_cols=21 Identities=29% Similarity=0.529 Sum_probs=19.4
Q ss_pred EEEEcCCCCchhHHHHHHhhC
Q psy4710 8 LVIVGDGACGKTCLLIVFSKD 28 (192)
Q Consensus 8 i~v~G~~~~GKSsli~~l~~~ 28 (192)
|+|+|++|||||||++.|...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 689999999999999999875
No 459
>PRK03839 putative kinase; Provisional
Probab=97.45 E-value=0.00012 Score=50.19 Aligned_cols=22 Identities=23% Similarity=0.400 Sum_probs=20.0
Q ss_pred eEEEEcCCCCchhHHHHHHhhC
Q psy4710 7 KLVIVGDGACGKTCLLIVFSKD 28 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~~ 28 (192)
+|+++|.|||||||+..+|...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999988764
No 460
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.43 E-value=0.00012 Score=46.98 Aligned_cols=21 Identities=24% Similarity=0.283 Sum_probs=19.2
Q ss_pred EEEEcCCCCchhHHHHHHhhC
Q psy4710 8 LVIVGDGACGKTCLLIVFSKD 28 (192)
Q Consensus 8 i~v~G~~~~GKSsli~~l~~~ 28 (192)
|+|.|.+||||||+.+.|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999998765
No 461
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=97.42 E-value=0.00013 Score=54.51 Aligned_cols=25 Identities=32% Similarity=0.646 Sum_probs=21.6
Q ss_pred EEEEcCCCCchhHHHHHHhhCCCCC
Q psy4710 8 LVIVGDGACGKTCLLIVFSKDQFPE 32 (192)
Q Consensus 8 i~v~G~~~~GKSsli~~l~~~~~~~ 32 (192)
++++||+|||||||++.+.+-..+.
T Consensus 32 ~vllGPSGcGKSTlLr~IAGLe~~~ 56 (338)
T COG3839 32 VVLLGPSGCGKSTLLRMIAGLEEPT 56 (338)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCC
Confidence 7899999999999999999866543
No 462
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.42 E-value=0.00014 Score=46.83 Aligned_cols=22 Identities=23% Similarity=0.338 Sum_probs=19.8
Q ss_pred EEEEcCCCCchhHHHHHHhhCC
Q psy4710 8 LVIVGDGACGKTCLLIVFSKDQ 29 (192)
Q Consensus 8 i~v~G~~~~GKSsli~~l~~~~ 29 (192)
|++.|++|+|||++++.+...-
T Consensus 1 ill~G~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL 22 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT
T ss_pred CEEECcCCCCeeHHHHHHHhhc
Confidence 6899999999999999988764
No 463
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=97.42 E-value=0.00022 Score=48.81 Aligned_cols=23 Identities=26% Similarity=0.482 Sum_probs=20.5
Q ss_pred eEEEEcCCCCchhHHHHHHhhCC
Q psy4710 7 KLVIVGDGACGKTCLLIVFSKDQ 29 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~~~ 29 (192)
-|+++|++|||||||++.|....
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHccC
Confidence 48999999999999999998753
No 464
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=97.41 E-value=0.00013 Score=49.82 Aligned_cols=23 Identities=26% Similarity=0.306 Sum_probs=20.2
Q ss_pred eEEEEcCCCCchhHHHHHHhhCC
Q psy4710 7 KLVIVGDGACGKTCLLIVFSKDQ 29 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~~~ 29 (192)
.++|+|++||||||+++.|....
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~~ 25 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARARL 25 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 47899999999999999987753
No 465
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.41 E-value=0.00014 Score=45.09 Aligned_cols=20 Identities=35% Similarity=0.514 Sum_probs=18.5
Q ss_pred eEEEEcCCCCchhHHHHHHh
Q psy4710 7 KLVIVGDGACGKTCLLIVFS 26 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~ 26 (192)
.++++|++|+|||||++.+.
T Consensus 17 ~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 17 GVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEcCCCCCHHHHHHHhh
Confidence 58999999999999999976
No 466
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.39 E-value=0.00016 Score=51.42 Aligned_cols=25 Identities=28% Similarity=0.365 Sum_probs=21.8
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhC
Q psy4710 4 IRKKLVIVGDGACGKTCLLIVFSKD 28 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~ 28 (192)
..+||+|+|+|||||||+...|...
T Consensus 5 ~~mrIvl~G~PGsGK~T~a~~La~~ 29 (229)
T PTZ00088 5 GPLKIVLFGAPGVGKGTFAEILSKK 29 (229)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 4678999999999999999988653
No 467
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.39 E-value=0.00016 Score=46.76 Aligned_cols=27 Identities=30% Similarity=0.464 Sum_probs=23.1
Q ss_pred eeEEEEcCCCCchhHHHHHHhhCCCCC
Q psy4710 6 KKLVIVGDGACGKTCLLIVFSKDQFPE 32 (192)
Q Consensus 6 ~~i~v~G~~~~GKSsli~~l~~~~~~~ 32 (192)
-.++++|++|+||||++..+...-...
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~ 29 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPP 29 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCC
Confidence 468999999999999999998766544
No 468
>PRK08233 hypothetical protein; Provisional
Probab=97.39 E-value=0.00018 Score=49.25 Aligned_cols=24 Identities=25% Similarity=0.261 Sum_probs=21.0
Q ss_pred ceeEEEEcCCCCchhHHHHHHhhC
Q psy4710 5 RKKLVIVGDGACGKTCLLIVFSKD 28 (192)
Q Consensus 5 ~~~i~v~G~~~~GKSsli~~l~~~ 28 (192)
.+-|+|.|.+|||||||.++|...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 466889999999999999999864
No 469
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=97.39 E-value=0.00015 Score=47.45 Aligned_cols=23 Identities=26% Similarity=0.382 Sum_probs=20.3
Q ss_pred eEEEEcCCCCchhHHHHHHhhCC
Q psy4710 7 KLVIVGDGACGKTCLLIVFSKDQ 29 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~~~ 29 (192)
.|+|+|+.|||||||+..|.+.-
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~l 24 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINEL 24 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999987653
No 470
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.39 E-value=0.00014 Score=50.06 Aligned_cols=23 Identities=22% Similarity=0.455 Sum_probs=20.5
Q ss_pred eEEEEcCCCCchhHHHHHHhhCC
Q psy4710 7 KLVIVGDGACGKTCLLIVFSKDQ 29 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~~~ 29 (192)
.++|+|++|||||||++.|....
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 68999999999999999997653
No 471
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.38 E-value=0.00015 Score=50.44 Aligned_cols=21 Identities=24% Similarity=0.325 Sum_probs=19.2
Q ss_pred EEEEcCCCCchhHHHHHHhhC
Q psy4710 8 LVIVGDGACGKTCLLIVFSKD 28 (192)
Q Consensus 8 i~v~G~~~~GKSsli~~l~~~ 28 (192)
|+|.|++|||||||++.|.+.
T Consensus 2 igi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999998765
No 472
>PRK14532 adenylate kinase; Provisional
Probab=97.37 E-value=0.00016 Score=49.80 Aligned_cols=22 Identities=23% Similarity=0.368 Sum_probs=20.0
Q ss_pred eEEEEcCCCCchhHHHHHHhhC
Q psy4710 7 KLVIVGDGACGKTCLLIVFSKD 28 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~~ 28 (192)
+|+++|+|||||||+..+|...
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~ 23 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEE 23 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999998753
No 473
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=97.36 E-value=0.00022 Score=50.04 Aligned_cols=28 Identities=14% Similarity=0.190 Sum_probs=25.1
Q ss_pred CcccceeEEEEcCCCCchhHHHHHHhhC
Q psy4710 1 MAAIRKKLVIVGDGACGKTCLLIVFSKD 28 (192)
Q Consensus 1 ~~~~~~~i~v~G~~~~GKSsli~~l~~~ 28 (192)
|-+.++.|+|.|.+||||||+++.|...
T Consensus 1 ~~~~~~~igitG~igsGKSt~~~~l~~~ 28 (208)
T PRK14731 1 MRSLPFLVGVTGGIGSGKSTVCRFLAEM 28 (208)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHC
Confidence 6678899999999999999999998864
No 474
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.35 E-value=0.00021 Score=50.08 Aligned_cols=25 Identities=20% Similarity=0.137 Sum_probs=21.6
Q ss_pred cceeEEEEcCCCCchhHHHHHHhhC
Q psy4710 4 IRKKLVIVGDGACGKTCLLIVFSKD 28 (192)
Q Consensus 4 ~~~~i~v~G~~~~GKSsli~~l~~~ 28 (192)
...-|+|.|++|||||||++.+.+.
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHH
Confidence 4567899999999999999998764
No 475
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=97.34 E-value=0.00022 Score=48.25 Aligned_cols=25 Identities=28% Similarity=0.169 Sum_probs=21.2
Q ss_pred ceeEEEEcCCCCchhHHHHHHhhCC
Q psy4710 5 RKKLVIVGDGACGKTCLLIVFSKDQ 29 (192)
Q Consensus 5 ~~~i~v~G~~~~GKSsli~~l~~~~ 29 (192)
..-+.|+|++|||||||++++...-
T Consensus 6 ~~ii~ivG~sgsGKTTLi~~li~~l 30 (173)
T PRK10751 6 IPLLAIAAWSGTGKTTLLKKLIPAL 30 (173)
T ss_pred ceEEEEECCCCChHHHHHHHHHHHH
Confidence 4457999999999999999988653
No 476
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.34 E-value=0.00018 Score=49.48 Aligned_cols=21 Identities=24% Similarity=0.252 Sum_probs=19.1
Q ss_pred eEEEEcCCCCchhHHHHHHhh
Q psy4710 7 KLVIVGDGACGKTCLLIVFSK 27 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~ 27 (192)
-|+++|++||||||+++.+..
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999874
No 477
>PRK13949 shikimate kinase; Provisional
Probab=97.33 E-value=0.0002 Score=48.54 Aligned_cols=22 Identities=27% Similarity=0.471 Sum_probs=19.7
Q ss_pred eEEEEcCCCCchhHHHHHHhhC
Q psy4710 7 KLVIVGDGACGKTCLLIVFSKD 28 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~~ 28 (192)
+|+|+|++||||||+...+...
T Consensus 3 ~I~liG~~GsGKstl~~~La~~ 24 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARE 24 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999987653
No 478
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.32 E-value=0.0002 Score=49.30 Aligned_cols=25 Identities=36% Similarity=0.437 Sum_probs=21.9
Q ss_pred ceeEEEEcCCCCchhHHHHHHhhCC
Q psy4710 5 RKKLVIVGDGACGKTCLLIVFSKDQ 29 (192)
Q Consensus 5 ~~~i~v~G~~~~GKSsli~~l~~~~ 29 (192)
.-.++++|++|||||||++.+++..
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3469999999999999999998754
No 479
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.32 E-value=0.00053 Score=44.33 Aligned_cols=23 Identities=26% Similarity=0.338 Sum_probs=20.8
Q ss_pred eEEEEcCCCCchhHHHHHHhhCC
Q psy4710 7 KLVIVGDGACGKTCLLIVFSKDQ 29 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~~~ 29 (192)
-|++.|+.|+|||||++.+...-
T Consensus 24 ~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 24 VVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58899999999999999998764
No 480
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.32 E-value=0.00021 Score=48.73 Aligned_cols=21 Identities=24% Similarity=0.221 Sum_probs=18.9
Q ss_pred eeEEEEcCCCCchhHHHHHHh
Q psy4710 6 KKLVIVGDGACGKTCLLIVFS 26 (192)
Q Consensus 6 ~~i~v~G~~~~GKSsli~~l~ 26 (192)
-.++++|+.|+|||||++.++
T Consensus 22 ~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 22 VLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 368999999999999999886
No 481
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.32 E-value=0.00026 Score=48.29 Aligned_cols=25 Identities=28% Similarity=0.465 Sum_probs=21.8
Q ss_pred eEEEEcCCCCchhHHHHHHhhCCCC
Q psy4710 7 KLVIVGDGACGKTCLLIVFSKDQFP 31 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~~~~~ 31 (192)
.++++|+.|+|||||++.+.+...+
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~Gl~~p 51 (177)
T cd03222 27 VIGIVGPNGTGKTTAVKILAGQLIP 51 (177)
T ss_pred EEEEECCCCChHHHHHHHHHcCCCC
Confidence 5889999999999999999886543
No 482
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=97.32 E-value=0.00019 Score=49.60 Aligned_cols=22 Identities=18% Similarity=0.369 Sum_probs=19.9
Q ss_pred eEEEEcCCCCchhHHHHHHhhC
Q psy4710 7 KLVIVGDGACGKTCLLIVFSKD 28 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~~ 28 (192)
+|+|+|+|||||||+...|...
T Consensus 1 ~I~i~G~pGsGKst~a~~La~~ 22 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAKK 22 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999998764
No 483
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=97.32 E-value=0.00018 Score=50.89 Aligned_cols=21 Identities=29% Similarity=0.270 Sum_probs=18.9
Q ss_pred EEEEcCCCCchhHHHHHHhhC
Q psy4710 8 LVIVGDGACGKTCLLIVFSKD 28 (192)
Q Consensus 8 i~v~G~~~~GKSsli~~l~~~ 28 (192)
|+|.|++|||||||++.|.+.
T Consensus 2 igI~G~sGSGKTTla~~L~~~ 22 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQAL 22 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHHH
Confidence 689999999999999988764
No 484
>PRK02496 adk adenylate kinase; Provisional
Probab=97.31 E-value=0.00023 Score=48.94 Aligned_cols=23 Identities=22% Similarity=0.502 Sum_probs=20.5
Q ss_pred eeEEEEcCCCCchhHHHHHHhhC
Q psy4710 6 KKLVIVGDGACGKTCLLIVFSKD 28 (192)
Q Consensus 6 ~~i~v~G~~~~GKSsli~~l~~~ 28 (192)
.+|+|+|+|||||||+...|...
T Consensus 2 ~~i~i~G~pGsGKst~a~~la~~ 24 (184)
T PRK02496 2 TRLIFLGPPGAGKGTQAVVLAEH 24 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999988753
No 485
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=97.30 E-value=0.00025 Score=53.39 Aligned_cols=27 Identities=22% Similarity=0.345 Sum_probs=23.5
Q ss_pred ceeEEEEcCCCCchhHHHHHHhhCCCC
Q psy4710 5 RKKLVIVGDGACGKTCLLIVFSKDQFP 31 (192)
Q Consensus 5 ~~~i~v~G~~~~GKSsli~~l~~~~~~ 31 (192)
..+|+|.|+.|||||||+++|+..-..
T Consensus 162 ~~nilI~G~tGSGKTTll~aLl~~i~~ 188 (344)
T PRK13851 162 RLTMLLCGPTGSGKTTMSKTLISAIPP 188 (344)
T ss_pred CCeEEEECCCCccHHHHHHHHHcccCC
Confidence 578999999999999999999876543
No 486
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.30 E-value=0.00021 Score=49.76 Aligned_cols=23 Identities=17% Similarity=0.254 Sum_probs=20.1
Q ss_pred EEEEcCCCCchhHHHHHHhhCCC
Q psy4710 8 LVIVGDGACGKTCLLIVFSKDQF 30 (192)
Q Consensus 8 i~v~G~~~~GKSsli~~l~~~~~ 30 (192)
|+|.|++||||||+++.++....
T Consensus 4 ilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHhh
Confidence 78999999999999999876543
No 487
>PRK15453 phosphoribulokinase; Provisional
Probab=97.30 E-value=0.00027 Score=51.42 Aligned_cols=27 Identities=26% Similarity=0.428 Sum_probs=24.1
Q ss_pred CcccceeEEEEcCCCCchhHHHHHHhh
Q psy4710 1 MAAIRKKLVIVGDGACGKTCLLIVFSK 27 (192)
Q Consensus 1 ~~~~~~~i~v~G~~~~GKSsli~~l~~ 27 (192)
|+....-|+|.|.+||||||+.+++..
T Consensus 1 Ms~k~piI~ItG~SGsGKTTva~~l~~ 27 (290)
T PRK15453 1 MSAKHPIIAVTGSSGAGTTTVKRAFEK 27 (290)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 777889999999999999999998753
No 488
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.28 E-value=0.00023 Score=48.80 Aligned_cols=21 Identities=14% Similarity=0.295 Sum_probs=18.9
Q ss_pred EEEEcCCCCchhHHHHHHhhC
Q psy4710 8 LVIVGDGACGKTCLLIVFSKD 28 (192)
Q Consensus 8 i~v~G~~~~GKSsli~~l~~~ 28 (192)
|+++|+|||||||+..+|...
T Consensus 2 i~i~G~pGsGKst~a~~la~~ 22 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVEN 22 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999998764
No 489
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=97.27 E-value=0.00023 Score=47.59 Aligned_cols=21 Identities=24% Similarity=0.358 Sum_probs=19.5
Q ss_pred eeEEEEcCCCCchhHHHHHHh
Q psy4710 6 KKLVIVGDGACGKTCLLIVFS 26 (192)
Q Consensus 6 ~~i~v~G~~~~GKSsli~~l~ 26 (192)
++|+|.|.||+||||+.++|.
T Consensus 1 m~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 1 MLIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred CeEEEeCCCCCchHHHHHHHH
Confidence 479999999999999999987
No 490
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=97.27 E-value=0.00024 Score=49.95 Aligned_cols=21 Identities=24% Similarity=0.385 Sum_probs=19.2
Q ss_pred eEEEEcCCCCchhHHHHHHhh
Q psy4710 7 KLVIVGDGACGKTCLLIVFSK 27 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~ 27 (192)
||+|+|+|||||||+...|..
T Consensus 1 rI~i~G~pGsGKsT~a~~La~ 21 (210)
T TIGR01351 1 RLVLLGPPGSGKGTQAKRIAE 21 (210)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998865
No 491
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.25 E-value=0.00025 Score=49.86 Aligned_cols=20 Identities=30% Similarity=0.559 Sum_probs=19.0
Q ss_pred EEEEcCCCCchhHHHHHHhh
Q psy4710 8 LVIVGDGACGKTCLLIVFSK 27 (192)
Q Consensus 8 i~v~G~~~~GKSsli~~l~~ 27 (192)
|+++|++|||||||+..+.+
T Consensus 33 VaiIG~SGaGKSTLLR~lng 52 (258)
T COG3638 33 VAIIGPSGAGKSTLLRSLNG 52 (258)
T ss_pred EEEECCCCCcHHHHHHHHhc
Confidence 79999999999999999887
No 492
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.24 E-value=0.00034 Score=49.12 Aligned_cols=24 Identities=29% Similarity=0.332 Sum_probs=21.2
Q ss_pred eEEEEcCCCCchhHHHHHHhhCCC
Q psy4710 7 KLVIVGDGACGKTCLLIVFSKDQF 30 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~~~~ 30 (192)
.++++|+.|+|||||++.+.+...
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~~~ 52 (211)
T cd03225 29 FVLIVGPNGSGKSTLLRLLNGLLG 52 (211)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 478999999999999999998653
No 493
>PRK08356 hypothetical protein; Provisional
Probab=97.24 E-value=0.00035 Score=48.53 Aligned_cols=27 Identities=30% Similarity=0.380 Sum_probs=22.3
Q ss_pred CcccceeEEEEcCCCCchhHHHHHHhh
Q psy4710 1 MAAIRKKLVIVGDGACGKTCLLIVFSK 27 (192)
Q Consensus 1 ~~~~~~~i~v~G~~~~GKSsli~~l~~ 27 (192)
|-.....|+++|++||||||+.+.|..
T Consensus 1 ~~~~~~~i~~~G~~gsGK~t~a~~l~~ 27 (195)
T PRK08356 1 MGVEKMIVGVVGKIAAGKTTVAKFFEE 27 (195)
T ss_pred CCCCcEEEEEECCCCCCHHHHHHHHHH
Confidence 344556799999999999999999954
No 494
>COG1161 Predicted GTPases [General function prediction only]
Probab=97.24 E-value=0.00028 Score=52.81 Aligned_cols=94 Identities=22% Similarity=0.254 Sum_probs=62.8
Q ss_pred eCCCCC-cccccccccCCCCCEEEEEEECCChhhhhchhhhhHHHHhhhCCCCcEEEEeecccccCCccchhhhhhccCC
Q psy4710 59 DTAGQE-DYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIKELNKMKQE 137 (192)
Q Consensus 59 D~~g~~-~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~ 137 (192)
+.||+. .+.......+...|.++.|+|+.++.+... ..+.++..+.|.++|+||.|+.+.
T Consensus 16 ~~~g~~~k~~~~~~~~~~~~d~vvevvDar~P~~s~~------~~l~~~v~~k~~i~vlNK~DL~~~------------- 76 (322)
T COG1161 16 WFPGHMKKAKRQLKEVLKSVDVVVEVVDARDPLGTRN------PELERIVKEKPKLLVLNKADLAPK------------- 76 (322)
T ss_pred CCCCchHHHHHHHHHhcccCCEEEEEEeccccccccC------ccHHHHHccCCcEEEEehhhcCCH-------------
Confidence 446753 455566677889999999999999865333 333333446777999999999872
Q ss_pred CCCHHHHHHHHHHcCCceEEEeccCCcCCHHHHHH
Q psy4710 138 PVKPEEGRAMAQKINAFAYLECSAKSKEGVREVFE 172 (192)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~ 172 (192)
.....+...+.+..+ ...+.+++..+.+...+..
T Consensus 77 ~~~~~W~~~~~~~~~-~~~~~v~~~~~~~~~~i~~ 110 (322)
T COG1161 77 EVTKKWKKYFKKEEG-IKPIFVSAKSRQGGKKIRK 110 (322)
T ss_pred HHHHHHHHHHHhcCC-CccEEEEeecccCccchHH
Confidence 234445555555544 3556788887777666664
No 495
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.23 E-value=0.00038 Score=48.69 Aligned_cols=24 Identities=21% Similarity=0.286 Sum_probs=21.3
Q ss_pred eEEEEcCCCCchhHHHHHHhhCCC
Q psy4710 7 KLVIVGDGACGKTCLLIVFSKDQF 30 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~~~~ 30 (192)
.++++|+.|||||||++.+.+...
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~~ 51 (205)
T cd03226 28 IIALTGKNGAGKTTLAKILAGLIK 51 (205)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 579999999999999999988653
No 496
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=97.23 E-value=0.00034 Score=47.55 Aligned_cols=24 Identities=17% Similarity=0.411 Sum_probs=21.1
Q ss_pred ceeEEEEcCCCCchhHHHHHHhhC
Q psy4710 5 RKKLVIVGDGACGKTCLLIVFSKD 28 (192)
Q Consensus 5 ~~~i~v~G~~~~GKSsli~~l~~~ 28 (192)
..+|+++|++||||||+...+...
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~ 27 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQ 27 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHH
Confidence 457999999999999999998754
No 497
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=97.23 E-value=0.00027 Score=50.59 Aligned_cols=22 Identities=23% Similarity=0.320 Sum_probs=20.0
Q ss_pred EEEEcCCCCchhHHHHHHhhCC
Q psy4710 8 LVIVGDGACGKTCLLIVFSKDQ 29 (192)
Q Consensus 8 i~v~G~~~~GKSsli~~l~~~~ 29 (192)
++++||.|||||||+..+++--
T Consensus 33 ~~iiGPNGaGKSTLlK~iLGll 54 (254)
T COG1121 33 TALIGPNGAGKSTLLKAILGLL 54 (254)
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 6899999999999999999843
No 498
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=97.23 E-value=0.00027 Score=50.81 Aligned_cols=22 Identities=27% Similarity=0.323 Sum_probs=19.6
Q ss_pred EEEEcCCCCchhHHHHHHhhCC
Q psy4710 8 LVIVGDGACGKTCLLIVFSKDQ 29 (192)
Q Consensus 8 i~v~G~~~~GKSsli~~l~~~~ 29 (192)
++++||.|||||||++.+.+--
T Consensus 31 ~~iiGpNG~GKSTLLk~l~g~l 52 (258)
T COG1120 31 TGILGPNGSGKSTLLKCLAGLL 52 (258)
T ss_pred EEEECCCCCCHHHHHHHHhccC
Confidence 6899999999999999998743
No 499
>PRK05541 adenylylsulfate kinase; Provisional
Probab=97.23 E-value=0.00036 Score=47.59 Aligned_cols=27 Identities=19% Similarity=0.158 Sum_probs=22.6
Q ss_pred cccceeEEEEcCCCCchhHHHHHHhhC
Q psy4710 2 AAIRKKLVIVGDGACGKTCLLIVFSKD 28 (192)
Q Consensus 2 ~~~~~~i~v~G~~~~GKSsli~~l~~~ 28 (192)
.....-|++.|.+||||||+.+.+...
T Consensus 4 ~~~~~~I~i~G~~GsGKst~a~~l~~~ 30 (176)
T PRK05541 4 KPNGYVIWITGLAGSGKTTIAKALYER 30 (176)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 345678999999999999999887654
No 500
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=97.23 E-value=0.00037 Score=49.21 Aligned_cols=24 Identities=29% Similarity=0.376 Sum_probs=21.3
Q ss_pred eEEEEcCCCCchhHHHHHHhhCCC
Q psy4710 7 KLVIVGDGACGKTCLLIVFSKDQF 30 (192)
Q Consensus 7 ~i~v~G~~~~GKSsli~~l~~~~~ 30 (192)
.++++|+.|||||||++.+.+...
T Consensus 32 ~~~l~G~nGsGKSTLl~~i~Gl~~ 55 (218)
T cd03255 32 FVAIVGPSGSGKSTLLNILGGLDR 55 (218)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCcC
Confidence 478999999999999999998653
Done!