BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy4713
         (103 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q2KIU2|PMVK_BOVIN Phosphomevalonate kinase OS=Bos taurus GN=PMVK PE=2 SV=3
          Length = 192

 Score =  107 bits (266), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 47/90 (52%), Positives = 67/90 (74%)

Query: 4  PKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQNGLEMDKLLGATK 63
          P L+LLFSGKRKSGKDF+T+ L  R+G+  CAI+RLS P+K  +A+++GL+  +L+ A+ 
Sbjct: 8  PGLVLLFSGKRKSGKDFVTEALQSRLGADVCAILRLSGPLKEQYAQEHGLDFQRLMDAST 67

Query: 64 YKEKYRAEMITWSEAERRKDNGCFIRSAIE 93
          YKE YR++MI W E +R+ D G F R  +E
Sbjct: 68 YKEAYRSDMIRWGEEKRQADPGFFCRKIVE 97


>sp|Q29081|PMVK_PIG Phosphomevalonate kinase (Fragment) OS=Sus scrofa GN=PMVK PE=1
          SV=3
          Length = 130

 Score =  105 bits (263), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 46/90 (51%), Positives = 66/90 (73%)

Query: 4  PKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQNGLEMDKLLGATK 63
          P+L+LLFSGKRK GKDF+T+ L  R+G+  CAI+RLS P+K  +A+++GL+  +LL A+ 
Sbjct: 8  PRLVLLFSGKRKDGKDFVTEALQSRLGADVCAILRLSGPLKEQYAQEHGLDFQRLLDAST 67

Query: 64 YKEKYRAEMITWSEAERRKDNGCFIRSAIE 93
          YKE YR +MI W + +R+ D G F R  +E
Sbjct: 68 YKESYRKDMIRWGQEKRQADPGFFCRKIVE 97


>sp|Q9D1G2|PMVK_MOUSE Phosphomevalonate kinase OS=Mus musculus GN=Pmvk PE=2 SV=3
          Length = 192

 Score =  105 bits (263), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 47/90 (52%), Positives = 66/90 (73%)

Query: 4  PKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQNGLEMDKLLGATK 63
          P+L+LLFSGKRKSGKDF+T+ L  R+G   CA++RLS P+K  +A+++GL+  +LL A+ 
Sbjct: 8  PRLVLLFSGKRKSGKDFVTERLKSRLGGNICALLRLSGPLKEEYAREHGLDFQRLLDAST 67

Query: 64 YKEKYRAEMITWSEAERRKDNGCFIRSAIE 93
          YKE YR +MI W E +R+ D G F R  +E
Sbjct: 68 YKETYRRDMICWGEQKRQADPGFFCRKIVE 97


>sp|Q15126|PMVK_HUMAN Phosphomevalonate kinase OS=Homo sapiens GN=PMVK PE=1 SV=3
          Length = 192

 Score =  103 bits (258), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 45/90 (50%), Positives = 65/90 (72%)

Query: 4  PKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQNGLEMDKLLGATK 63
          P+L+LLFSGKRKSGKDF+T+ L  R+G+  CA++RLS P+K  +A+++GL   +LL  + 
Sbjct: 8  PRLVLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPLKEQYAQEHGLNFQRLLDTST 67

Query: 64 YKEKYRAEMITWSEAERRKDNGCFIRSAIE 93
          YKE +R +MI W E +R+ D G F R  +E
Sbjct: 68 YKEAFRKDMIRWGEEKRQADPGFFCRKIVE 97


>sp|Q9VIT2|PMVK_DROME Probable phosphomevalonate kinase OS=Drosophila melanogaster
           GN=CG10268 PE=2 SV=1
          Length = 189

 Score = 96.3 bits (238), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 47/94 (50%), Positives = 67/94 (71%), Gaps = 1/94 (1%)

Query: 7   ILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQNGLEMDKLLGATKYKE 66
           I+L SGKRK GKD++++ L  R+GS+ C I+R+S PIKS WA++  L++D LLG   YKE
Sbjct: 4   IVLISGKRKCGKDYISERLQRRLGSRSC-IVRISEPIKSEWARKLQLDLDALLGDGPYKE 62

Query: 67  KYRAEMITWSEAERRKDNGCFIRSAIEMAHAMKK 100
           KYR +MI WS+  R +D G F R A+E A + ++
Sbjct: 63  KYRRDMIVWSDEVRAQDYGYFCRVAMEEALSRQQ 96


>sp|Q00149|VG77_ICHVA Uncharacterized protein ORF77 OS=Ictalurid herpesvirus 1 (strain
           Auburn) GN=ORF77 PE=4 SV=1
          Length = 228

 Score = 35.0 bits (79), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 36/86 (41%), Gaps = 11/86 (12%)

Query: 8   LLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQNGLEMDKLLGATKYKEK 67
           L F+G+  SGKD   DY + +IG +           K H      +   K LG    K +
Sbjct: 70  LAFAGRMGSGKDHACDYCISKIGGE-----------KVHVFDAGLMRATKFLGRPIEKPR 118

Query: 68  YRAEMITWSEAERRKDNGCFIRSAIE 93
            R  +    +  RR D   ++R AIE
Sbjct: 119 DRPFLQAIGDLGRRLDANFWVRDAIE 144


>sp|Q00150|VG76_ICHVA Uncharacterized protein ORF76 OS=Ictalurid herpesvirus 1 (strain
          Auburn) GN=ORF76 PE=4 SV=1
          Length = 241

 Score = 29.3 bits (64), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 12/25 (48%), Positives = 16/25 (64%)

Query: 7  ILLFSGKRKSGKDFLTDYLLERIGS 31
          I+ F+G+  SGKD   DY  ER G+
Sbjct: 59 IIAFAGRMGSGKDHACDYFCERFGA 83


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.321    0.134    0.398 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,179,913
Number of Sequences: 539616
Number of extensions: 1327779
Number of successful extensions: 3203
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 3195
Number of HSP's gapped (non-prelim): 8
length of query: 103
length of database: 191,569,459
effective HSP length: 72
effective length of query: 31
effective length of database: 152,717,107
effective search space: 4734230317
effective search space used: 4734230317
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)