Query psy4713
Match_columns 103
No_of_seqs 100 out of 108
Neff 3.8
Searched_HMMs 46136
Date Fri Aug 16 23:57:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4713.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4713hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04275 P-mevalo_kinase: Phos 100.0 1.2E-50 2.6E-55 290.7 5.8 86 10-95 1-86 (116)
2 TIGR01223 Pmev_kin_anim phosph 100.0 1.5E-43 3.2E-48 269.6 8.7 89 7-95 1-89 (182)
3 PHA02575 1 deoxynucleoside mon 98.5 5.9E-07 1.3E-11 70.8 7.8 86 6-94 1-147 (227)
4 PRK08356 hypothetical protein; 97.7 3.5E-05 7.6E-10 56.5 3.1 76 1-81 1-76 (195)
5 PRK05480 uridine/cytidine kina 97.3 0.00061 1.3E-08 49.9 5.3 40 1-40 2-41 (209)
6 PRK00131 aroK shikimate kinase 97.1 0.0024 5.1E-08 44.1 6.6 49 3-58 2-50 (175)
7 PRK06696 uridine kinase; Valid 97.0 0.0014 3E-08 49.1 4.5 38 3-40 20-57 (223)
8 PF13207 AAA_17: AAA domain; P 96.9 0.0016 3.4E-08 43.1 4.3 32 7-41 1-32 (121)
9 TIGR02173 cyt_kin_arch cytidyl 96.9 0.0027 6E-08 44.0 5.4 48 7-58 2-49 (171)
10 COG1102 Cmk Cytidylate kinase 96.8 0.0029 6.3E-08 49.0 5.0 51 6-60 1-51 (179)
11 PRK01184 hypothetical protein; 96.6 0.0051 1.1E-07 44.0 5.0 40 6-49 2-41 (184)
12 TIGR01359 UMP_CMP_kin_fam UMP- 96.5 0.0037 8E-08 44.3 4.0 39 7-48 1-39 (183)
13 PF13671 AAA_33: AAA domain; P 96.5 0.011 2.3E-07 39.9 5.9 30 7-39 1-30 (143)
14 cd01124 KaiC KaiC is a circadi 96.5 0.011 2.3E-07 41.6 5.9 54 7-60 1-58 (187)
15 PRK15453 phosphoribulokinase; 96.4 0.0043 9.4E-08 50.7 4.3 38 1-38 1-40 (290)
16 PRK12338 hypothetical protein; 96.4 0.0054 1.2E-07 50.4 4.8 61 1-65 1-61 (319)
17 PRK04040 adenylate kinase; Pro 96.4 0.019 4.1E-07 42.7 7.3 46 6-53 3-48 (188)
18 cd01428 ADK Adenylate kinase ( 96.3 0.0079 1.7E-07 42.6 4.5 52 8-62 2-55 (194)
19 PRK14731 coaE dephospho-CoA ki 96.2 0.038 8.2E-07 41.3 7.9 34 1-38 1-34 (208)
20 PTZ00301 uridine kinase; Provi 96.1 0.01 2.3E-07 45.3 4.8 37 4-40 2-42 (210)
21 PRK00300 gmk guanylate kinase; 96.1 0.0062 1.3E-07 44.0 3.3 30 1-30 1-30 (205)
22 PLN02200 adenylate kinase fami 96.0 0.017 3.6E-07 44.5 5.5 43 4-49 42-84 (234)
23 PRK00081 coaE dephospho-CoA ki 96.0 0.076 1.6E-06 39.2 8.6 39 6-48 3-41 (194)
24 PRK07667 uridine kinase; Provi 95.8 0.016 3.6E-07 42.6 4.6 43 2-44 14-58 (193)
25 TIGR03880 KaiC_arch_3 KaiC dom 95.8 0.04 8.6E-07 40.8 6.6 58 4-61 15-76 (224)
26 PRK04328 hypothetical protein; 95.8 0.039 8.4E-07 42.4 6.7 59 4-62 22-84 (249)
27 PRK04182 cytidylate kinase; Pr 95.8 0.031 6.7E-07 38.9 5.5 48 7-58 2-49 (180)
28 PRK06762 hypothetical protein; 95.7 0.03 6.4E-07 39.3 5.3 39 6-46 3-41 (166)
29 PRK08233 hypothetical protein; 95.7 0.022 4.7E-07 39.9 4.5 27 5-31 3-29 (182)
30 PF03976 PPK2: Polyphosphate k 95.7 0.014 3E-07 45.6 3.9 45 5-49 31-75 (228)
31 PF00004 AAA: ATPase family as 95.7 0.02 4.3E-07 37.4 4.1 32 8-42 1-32 (132)
32 PF07724 AAA_2: AAA domain (Cd 95.7 0.0081 1.8E-07 44.3 2.3 81 3-84 1-82 (171)
33 cd02028 UMPK_like Uridine mono 95.5 0.02 4.4E-07 42.0 3.9 38 7-44 1-40 (179)
34 PF14532 Sigma54_activ_2: Sigm 95.5 0.0074 1.6E-07 41.8 1.5 26 6-31 22-47 (138)
35 PRK14730 coaE dephospho-CoA ki 95.4 0.11 2.4E-06 38.7 7.8 60 7-83 3-62 (195)
36 COG0237 CoaE Dephospho-CoA kin 95.4 0.06 1.3E-06 41.2 6.3 41 5-49 2-42 (201)
37 TIGR00455 apsK adenylylsulfate 95.4 0.076 1.6E-06 38.1 6.5 44 1-44 14-58 (184)
38 PRK14527 adenylate kinase; Pro 95.4 0.022 4.7E-07 41.4 3.7 44 3-49 4-47 (191)
39 TIGR03707 PPK2_P_aer polyphosp 95.3 0.028 6.1E-07 44.1 4.5 45 4-48 30-74 (230)
40 cd00009 AAA The AAA+ (ATPases 95.3 0.034 7.3E-07 35.5 4.1 37 4-40 18-54 (151)
41 COG0572 Udk Uridine kinase [Nu 95.3 0.035 7.7E-07 43.7 4.9 38 1-38 1-41 (218)
42 PF06745 KaiC: KaiC; InterPro 95.3 0.054 1.2E-06 40.0 5.6 57 5-61 19-80 (226)
43 PF00158 Sigma54_activat: Sigm 95.3 0.022 4.8E-07 41.8 3.5 35 6-40 23-59 (168)
44 cd02027 APSK Adenosine 5'-phos 95.2 0.037 8.1E-07 39.2 4.5 42 7-48 1-43 (149)
45 TIGR03420 DnaA_homol_Hda DnaA 95.2 0.031 6.8E-07 40.6 4.1 28 4-31 37-64 (226)
46 TIGR01351 adk adenylate kinase 95.2 0.034 7.3E-07 41.1 4.2 53 8-63 2-56 (210)
47 PRK12339 2-phosphoglycerate ki 95.2 0.067 1.5E-06 40.4 5.9 47 5-54 3-49 (197)
48 PF00625 Guanylate_kin: Guanyl 95.1 0.042 9E-07 39.6 4.5 25 7-31 4-28 (183)
49 TIGR03574 selen_PSTK L-seryl-t 95.1 0.048 1E-06 41.2 5.0 25 7-31 1-25 (249)
50 PRK07429 phosphoribulokinase; 95.1 0.045 9.9E-07 44.5 5.1 41 1-41 4-44 (327)
51 PF13238 AAA_18: AAA domain; P 95.1 0.028 6E-07 36.6 3.1 22 8-29 1-22 (129)
52 PF13401 AAA_22: AAA domain; P 95.0 0.09 1.9E-06 34.7 5.6 78 4-81 3-88 (131)
53 PRK14530 adenylate kinase; Pro 95.0 0.061 1.3E-06 39.8 5.3 41 1-46 1-41 (215)
54 PRK06067 flagellar accessory p 95.0 0.099 2.1E-06 39.0 6.4 58 4-61 24-85 (234)
55 PF06309 Torsin: Torsin; Inte 95.0 0.033 7.1E-07 40.8 3.7 28 3-30 51-78 (127)
56 cd00464 SK Shikimate kinase (S 95.0 0.046 1E-06 37.2 4.3 45 8-59 2-46 (154)
57 PRK03846 adenylylsulfate kinas 95.0 0.05 1.1E-06 39.9 4.7 44 3-46 22-66 (198)
58 cd02020 CMPK Cytidine monophos 95.0 0.027 5.8E-07 37.9 3.0 32 7-41 1-32 (147)
59 PRK14531 adenylate kinase; Pro 94.9 0.057 1.2E-06 39.1 4.8 40 7-49 4-43 (183)
60 PF07728 AAA_5: AAA domain (dy 94.9 0.055 1.2E-06 36.8 4.3 34 8-42 2-35 (139)
61 cd02022 DPCK Dephospho-coenzym 94.8 0.092 2E-06 38.0 5.7 38 7-48 1-38 (179)
62 TIGR00235 udk uridine kinase. 94.8 0.062 1.3E-06 39.6 4.8 39 3-41 4-42 (207)
63 PF00485 PRK: Phosphoribulokin 94.8 0.041 9E-07 40.1 3.7 38 7-44 1-44 (194)
64 PRK05541 adenylylsulfate kinas 94.7 0.077 1.7E-06 37.7 5.0 31 1-31 3-33 (176)
65 cd02021 GntK Gluconate kinase 94.7 0.029 6.3E-07 38.6 2.7 24 7-30 1-24 (150)
66 PRK08154 anaerobic benzoate ca 94.7 0.12 2.7E-06 41.0 6.5 66 2-75 130-195 (309)
67 cd02023 UMPK Uridine monophosp 94.7 0.057 1.2E-06 39.1 4.2 35 7-41 1-35 (198)
68 PRK03731 aroL shikimate kinase 94.7 0.12 2.5E-06 36.4 5.7 33 8-43 5-37 (171)
69 TIGR03709 PPK2_rel_1 polyphosp 94.6 0.061 1.3E-06 43.2 4.6 44 4-47 55-98 (264)
70 smart00072 GuKc Guanylate kina 94.4 0.056 1.2E-06 39.2 3.7 25 6-30 3-27 (184)
71 TIGR03881 KaiC_arch_4 KaiC dom 94.4 0.18 3.9E-06 37.2 6.5 57 4-60 19-79 (229)
72 PRK06547 hypothetical protein; 94.3 0.063 1.4E-06 39.6 3.8 35 3-40 13-47 (172)
73 PRK09270 nucleoside triphospha 94.3 0.091 2E-06 39.5 4.7 39 3-41 31-72 (229)
74 PRK13947 shikimate kinase; Pro 94.3 0.082 1.8E-06 37.0 4.2 24 8-31 4-27 (171)
75 PF13191 AAA_16: AAA ATPase do 94.2 0.06 1.3E-06 37.3 3.4 29 4-32 23-51 (185)
76 PF13173 AAA_14: AAA domain 94.2 0.13 2.8E-06 35.2 5.0 43 6-48 3-46 (128)
77 PF01583 APS_kinase: Adenylyls 94.2 0.088 1.9E-06 39.2 4.3 35 5-39 2-36 (156)
78 PRK04220 2-phosphoglycerate ki 93.9 0.17 3.7E-06 41.4 6.0 49 4-55 91-139 (301)
79 cd02024 NRK1 Nicotinamide ribo 93.9 0.071 1.5E-06 40.3 3.4 33 7-41 1-33 (187)
80 smart00382 AAA ATPases associa 93.9 0.085 1.8E-06 33.0 3.2 43 5-47 2-46 (148)
81 PRK00279 adk adenylate kinase; 93.8 0.1 2.3E-06 38.6 4.2 53 7-62 2-56 (215)
82 cd02025 PanK Pantothenate kina 93.8 0.1 2.2E-06 39.7 4.2 36 7-42 1-40 (220)
83 cd02019 NK Nucleoside/nucleoti 93.7 0.15 3.4E-06 31.9 4.2 29 7-35 1-29 (69)
84 PRK14528 adenylate kinase; Pro 93.6 0.14 3E-06 37.5 4.5 54 7-63 3-58 (186)
85 PLN00020 ribulose bisphosphate 93.6 0.1 2.2E-06 44.9 4.2 37 3-42 146-182 (413)
86 PLN02459 probable adenylate ki 93.6 0.18 4E-06 40.4 5.4 55 6-63 30-86 (261)
87 COG0194 Gmk Guanylate kinase [ 93.5 0.1 2.2E-06 40.7 3.9 37 4-44 3-39 (191)
88 PRK08903 DnaA regulatory inact 93.5 0.12 2.6E-06 38.2 4.1 38 5-42 42-81 (227)
89 TIGR02012 tigrfam_recA protein 93.5 0.21 4.6E-06 40.9 5.8 65 4-68 54-121 (321)
90 PRK09354 recA recombinase A; P 93.4 0.21 4.5E-06 41.6 5.7 65 4-68 59-126 (349)
91 PTZ00088 adenylate kinase 1; P 93.4 0.13 2.8E-06 39.7 4.3 40 7-49 8-47 (229)
92 PRK14532 adenylate kinase; Pro 93.4 0.19 4.2E-06 35.9 4.9 38 8-48 3-40 (188)
93 PRK05439 pantothenate kinase; 93.4 0.16 3.4E-06 41.5 4.9 41 2-42 83-127 (311)
94 PLN02348 phosphoribulokinase 93.4 0.16 3.5E-06 43.1 5.1 29 3-31 47-75 (395)
95 PRK02496 adk adenylate kinase; 93.3 0.17 3.7E-06 36.2 4.5 39 8-49 4-42 (184)
96 PLN02422 dephospho-CoA kinase 93.3 0.76 1.7E-05 36.0 8.4 39 7-49 3-41 (232)
97 cd00983 recA RecA is a bacter 93.1 0.31 6.6E-06 40.2 6.2 65 4-68 54-121 (325)
98 PRK00023 cmk cytidylate kinase 93.0 0.14 3.1E-06 38.9 3.9 52 1-56 1-54 (225)
99 PRK11608 pspF phage shock prot 93.0 0.11 2.5E-06 41.5 3.5 24 7-30 31-54 (326)
100 PRK14737 gmk guanylate kinase; 93.0 0.12 2.6E-06 38.4 3.3 26 4-29 3-28 (186)
101 PF01121 CoaE: Dephospho-CoA k 92.8 0.23 5E-06 37.1 4.6 36 6-45 1-36 (180)
102 TIGR00152 dephospho-CoA kinase 92.6 0.89 1.9E-05 32.9 7.4 40 7-49 1-40 (188)
103 TIGR01360 aden_kin_iso1 adenyl 92.6 0.16 3.4E-06 35.7 3.4 38 6-46 4-41 (188)
104 PLN02674 adenylate kinase 92.5 0.27 5.8E-06 38.8 4.9 58 4-64 30-89 (244)
105 PRK09302 circadian clock prote 92.5 0.42 9E-06 40.1 6.3 57 5-61 273-333 (509)
106 COG2804 PulE Type II secretory 92.5 0.18 3.8E-06 44.2 4.2 58 2-59 255-320 (500)
107 PRK08116 hypothetical protein; 92.5 0.31 6.7E-06 38.2 5.2 37 5-41 114-152 (268)
108 cd01672 TMPK Thymidine monopho 92.4 0.19 4.2E-06 35.0 3.6 37 6-42 1-37 (200)
109 cd00071 GMPK Guanosine monopho 92.4 0.14 3.1E-06 35.9 3.0 25 7-31 1-25 (137)
110 cd01120 RecA-like_NTPases RecA 92.4 0.2 4.4E-06 33.2 3.5 41 7-47 1-43 (165)
111 PRK12377 putative replication 92.4 0.24 5.1E-06 39.0 4.4 38 7-44 103-142 (248)
112 COG0467 RAD55 RecA-superfamily 92.3 0.61 1.3E-05 35.5 6.5 59 4-62 22-84 (260)
113 TIGR03877 thermo_KaiC_1 KaiC d 92.3 0.65 1.4E-05 35.1 6.6 58 4-61 20-81 (237)
114 TIGR02974 phageshock_pspF psp 92.3 0.16 3.5E-06 40.9 3.5 24 7-30 24-47 (329)
115 PTZ00451 dephospho-CoA kinase; 92.3 0.98 2.1E-05 35.6 7.8 40 6-48 2-41 (244)
116 TIGR02322 phosphon_PhnN phosph 92.3 0.17 3.7E-06 35.8 3.3 25 7-31 3-27 (179)
117 PRK14738 gmk guanylate kinase; 92.2 0.18 3.8E-06 37.6 3.4 24 5-28 13-36 (206)
118 PF00406 ADK: Adenylate kinase 92.2 0.21 4.5E-06 34.8 3.5 52 10-64 1-54 (151)
119 cd01131 PilT Pilus retraction 92.2 0.25 5.4E-06 36.5 4.2 37 7-43 3-40 (198)
120 cd02029 PRK_like Phosphoribulo 92.0 0.17 3.7E-06 41.3 3.4 32 7-38 1-34 (277)
121 cd01983 Fer4_NifH The Fer4_Nif 92.0 0.29 6.3E-06 29.7 3.7 25 7-31 1-25 (99)
122 PRK05506 bifunctional sulfate 92.0 0.2 4.3E-06 43.4 3.9 29 3-31 458-486 (632)
123 TIGR03708 poly_P_AMP_trns poly 91.9 0.34 7.4E-06 42.1 5.2 46 3-48 38-83 (493)
124 PRK14733 coaE dephospho-CoA ki 91.9 1.7 3.6E-05 33.4 8.4 40 5-47 6-45 (204)
125 PRK08533 flagellar accessory p 91.9 0.69 1.5E-05 35.3 6.3 58 4-61 23-84 (230)
126 TIGR03263 guanyl_kin guanylate 91.8 0.16 3.6E-06 35.8 2.7 24 7-30 3-26 (180)
127 TIGR01817 nifA Nif-specific re 91.6 0.2 4.4E-06 42.2 3.5 25 6-30 220-244 (534)
128 TIGR03878 thermo_KaiC_2 KaiC d 91.5 0.8 1.7E-05 35.5 6.4 56 4-59 35-98 (259)
129 PRK05022 anaerobic nitric oxid 91.4 0.22 4.8E-06 42.1 3.5 25 7-31 212-236 (509)
130 PRK03839 putative kinase; Prov 91.4 0.26 5.7E-06 35.1 3.4 32 7-41 2-33 (180)
131 TIGR03345 VI_ClpV1 type VI sec 91.3 0.48 1E-05 43.2 5.8 55 3-62 594-648 (852)
132 PRK13808 adenylate kinase; Pro 91.2 0.37 8E-06 39.9 4.5 53 8-63 3-57 (333)
133 PRK14732 coaE dephospho-CoA ki 91.1 1.4 3.1E-05 33.0 7.3 38 7-48 1-38 (196)
134 PF07693 KAP_NTPase: KAP famil 91.1 0.46 1E-05 36.3 4.7 38 3-40 18-58 (325)
135 TIGR01313 therm_gnt_kin carboh 91.1 0.2 4.3E-06 35.0 2.5 24 8-31 1-24 (163)
136 PRK14526 adenylate kinase; Pro 91.0 0.38 8.3E-06 36.6 4.2 54 8-64 3-58 (211)
137 PLN02796 D-glycerate 3-kinase 91.0 0.44 9.6E-06 39.8 4.9 38 4-41 99-138 (347)
138 COG3267 ExeA Type II secretory 90.9 0.33 7.1E-06 39.7 3.9 41 5-45 51-91 (269)
139 PRK00698 tmk thymidylate kinas 90.9 0.73 1.6E-05 32.8 5.3 27 5-31 3-29 (205)
140 PRK05800 cobU adenosylcobinami 90.7 0.46 1E-05 35.0 4.2 43 7-50 3-45 (170)
141 PRK09302 circadian clock prote 90.7 0.85 1.8E-05 38.3 6.3 57 4-60 30-91 (509)
142 PHA02530 pseT polynucleotide k 90.5 0.31 6.7E-06 37.3 3.3 25 6-30 3-27 (300)
143 TIGR00554 panK_bact pantothena 90.4 0.58 1.3E-05 37.7 4.9 39 3-41 60-102 (290)
144 PRK11034 clpA ATP-dependent Cl 90.4 0.49 1.1E-05 42.8 4.9 52 3-62 486-537 (758)
145 PRK09519 recA DNA recombinatio 90.3 0.89 1.9E-05 41.8 6.5 65 4-68 59-125 (790)
146 PRK10820 DNA-binding transcrip 90.3 0.32 6.8E-06 41.5 3.5 23 8-30 230-252 (520)
147 PRK08939 primosomal protein Dn 90.3 0.84 1.8E-05 36.7 5.8 34 7-40 158-193 (306)
148 smart00763 AAA_PrkA PrkA AAA d 90.2 1.1 2.4E-05 37.6 6.6 29 3-31 76-104 (361)
149 PRK13946 shikimate kinase; Pro 90.1 0.32 6.9E-06 35.3 3.0 26 6-31 11-36 (184)
150 COG3709 Uncharacterized compon 90.1 0.56 1.2E-05 36.8 4.4 32 6-37 6-38 (192)
151 COG2805 PilT Tfp pilus assembl 90.0 0.45 9.8E-06 40.3 4.1 53 3-55 123-176 (353)
152 cd02034 CooC The accessory pro 90.0 0.49 1.1E-05 32.9 3.6 31 8-38 2-34 (116)
153 COG0529 CysC Adenylylsulfate k 90.0 1.4 2.9E-05 34.9 6.5 35 2-36 20-54 (197)
154 PF08433 KTI12: Chromatin asso 89.8 1.2 2.6E-05 35.3 6.2 36 7-42 3-38 (270)
155 PRK06761 hypothetical protein; 89.8 0.64 1.4E-05 37.5 4.7 27 6-32 4-30 (282)
156 PF13189 Cytidylate_kin2: Cyti 89.8 0.35 7.7E-06 35.3 3.0 49 7-60 1-49 (179)
157 cd02026 PRK Phosphoribulokinas 89.7 0.54 1.2E-05 37.1 4.1 34 7-40 1-34 (273)
158 PF06414 Zeta_toxin: Zeta toxi 89.7 0.82 1.8E-05 33.5 4.8 71 3-79 13-85 (199)
159 cd00227 CPT Chloramphenicol (C 89.6 0.44 9.6E-06 34.1 3.3 26 6-31 3-28 (175)
160 PRK00440 rfc replication facto 89.4 0.41 8.9E-06 36.3 3.2 24 8-31 41-64 (319)
161 TIGR03015 pepcterm_ATPase puta 89.4 0.62 1.4E-05 34.7 4.1 27 5-31 43-69 (269)
162 TIGR01420 pilT_fam pilus retra 89.4 0.54 1.2E-05 37.9 4.0 42 3-44 120-162 (343)
163 PF13604 AAA_30: AAA domain; P 89.3 1.2 2.7E-05 33.0 5.6 51 3-53 16-68 (196)
164 PLN03046 D-glycerate 3-kinase; 89.2 0.77 1.7E-05 40.0 5.0 38 4-41 211-250 (460)
165 TIGR02880 cbbX_cfxQ probable R 89.2 0.69 1.5E-05 36.4 4.4 27 4-30 57-83 (284)
166 PRK12337 2-phosphoglycerate ki 89.1 0.88 1.9E-05 39.7 5.3 58 4-64 254-311 (475)
167 PRK10923 glnG nitrogen regulat 89.0 0.43 9.3E-06 38.9 3.2 28 4-31 160-187 (469)
168 PRK00091 miaA tRNA delta(2)-is 89.0 0.65 1.4E-05 37.6 4.2 30 1-31 1-30 (307)
169 PHA00729 NTP-binding motif con 89.0 1.2 2.6E-05 35.2 5.5 43 6-48 18-75 (226)
170 COG3596 Predicted GTPase [Gene 88.9 0.6 1.3E-05 38.7 4.0 72 2-75 36-114 (296)
171 PRK00625 shikimate kinase; Pro 88.9 0.85 1.8E-05 33.7 4.5 37 7-46 2-38 (173)
172 PF01695 IstB_IS21: IstB-like 88.8 0.61 1.3E-05 34.4 3.7 40 7-46 49-90 (178)
173 PRK15424 propionate catabolism 88.7 0.38 8.3E-06 41.9 2.9 22 7-28 244-265 (538)
174 TIGR02329 propionate_PrpR prop 88.5 0.52 1.1E-05 40.8 3.6 23 7-29 237-259 (526)
175 TIGR00041 DTMP_kinase thymidyl 88.5 0.91 2E-05 32.4 4.3 27 5-31 3-29 (195)
176 CHL00181 cbbX CbbX; Provisiona 88.5 0.8 1.7E-05 36.3 4.3 27 4-30 58-84 (287)
177 PRK10078 ribose 1,5-bisphospho 88.3 0.51 1.1E-05 34.1 2.9 24 7-30 4-27 (186)
178 PRK08181 transposase; Validate 88.2 1.3 2.8E-05 35.2 5.3 35 7-41 108-144 (269)
179 PRK03333 coaE dephospho-CoA ki 88.1 2.6 5.5E-05 35.0 7.2 40 6-49 2-41 (395)
180 PRK06217 hypothetical protein; 88.1 0.56 1.2E-05 33.8 3.0 25 7-31 3-27 (183)
181 KOG2170|consensus 88.1 0.61 1.3E-05 39.4 3.6 64 3-77 108-171 (344)
182 PRK15429 formate hydrogenlyase 88.1 0.57 1.2E-05 40.9 3.6 25 6-30 400-424 (686)
183 PHA02544 44 clamp loader, smal 88.0 0.92 2E-05 34.9 4.3 27 5-31 43-69 (316)
184 PF12846 AAA_10: AAA-like doma 87.9 0.69 1.5E-05 34.0 3.4 40 8-49 4-43 (304)
185 cd00984 DnaB_C DnaB helicase C 87.9 3.8 8.2E-05 30.2 7.3 65 4-68 12-83 (242)
186 cd01129 PulE-GspE PulE/GspE Th 87.8 0.74 1.6E-05 36.0 3.7 41 3-43 78-118 (264)
187 COG0464 SpoVK ATPases of the A 87.8 0.74 1.6E-05 38.3 3.9 36 4-42 275-310 (494)
188 PRK10865 protein disaggregatio 87.4 0.79 1.7E-05 41.7 4.2 37 4-40 597-633 (857)
189 TIGR02655 circ_KaiC circadian 87.4 2 4.3E-05 36.3 6.3 59 4-62 262-324 (484)
190 PRK00889 adenylylsulfate kinas 87.4 1.3 2.9E-05 31.3 4.5 35 4-38 3-39 (175)
191 TIGR00150 HI0065_YjeE ATPase, 87.4 0.28 6.2E-06 35.5 1.1 58 3-61 20-81 (133)
192 TIGR03499 FlhF flagellar biosy 87.4 1.8 3.9E-05 34.1 5.6 53 5-57 194-256 (282)
193 TIGR00017 cmk cytidylate kinas 87.3 0.78 1.7E-05 35.0 3.5 26 5-30 2-27 (217)
194 TIGR02639 ClpA ATP-dependent C 87.3 1.9 4E-05 38.3 6.3 61 8-82 206-273 (731)
195 PF00154 RecA: recA bacterial 87.3 1.2 2.7E-05 36.7 4.9 61 7-67 55-118 (322)
196 PRK07952 DNA replication prote 87.3 0.96 2.1E-05 35.5 4.1 35 7-41 101-137 (244)
197 PRK14734 coaE dephospho-CoA ki 87.2 1.5 3.3E-05 32.7 5.0 39 6-48 2-40 (200)
198 TIGR02538 type_IV_pilB type IV 87.2 0.6 1.3E-05 40.4 3.2 42 3-44 314-355 (564)
199 TIGR03346 chaperone_ClpB ATP-d 87.2 0.99 2.2E-05 40.8 4.6 37 3-39 593-629 (852)
200 PF05707 Zot: Zonular occluden 87.1 1.1 2.3E-05 33.0 4.0 26 6-31 1-28 (193)
201 KOG3347|consensus 87.1 0.91 2E-05 35.3 3.8 35 8-45 10-44 (176)
202 cd00544 CobU Adenosylcobinamid 87.1 1.3 2.7E-05 32.8 4.4 42 7-49 1-42 (169)
203 PRK05057 aroK shikimate kinase 87.1 0.93 2E-05 32.9 3.6 51 1-59 1-51 (172)
204 PRK14729 miaA tRNA delta(2)-is 87.0 1 2.2E-05 36.7 4.2 72 1-73 1-86 (300)
205 COG2204 AtoC Response regulato 86.9 0.56 1.2E-05 40.6 2.8 24 7-30 166-189 (464)
206 TIGR01007 eps_fam capsular exo 86.9 1.2 2.7E-05 32.2 4.2 38 1-38 14-53 (204)
207 CHL00081 chlI Mg-protoporyphyr 86.9 0.67 1.4E-05 38.5 3.1 24 8-31 41-64 (350)
208 PRK05642 DNA replication initi 86.8 1 2.2E-05 34.3 3.9 36 6-41 46-83 (234)
209 PF09848 DUF2075: Uncharacteri 86.6 2.2 4.7E-05 34.2 5.8 47 5-51 1-51 (352)
210 TIGR00176 mobB molybdopterin-g 86.5 1.2 2.5E-05 32.3 3.9 33 7-39 1-35 (155)
211 PRK11388 DNA-binding transcrip 86.4 0.78 1.7E-05 39.5 3.4 23 8-30 351-373 (638)
212 COG1484 DnaC DNA replication p 86.4 1.3 2.8E-05 34.6 4.4 36 8-43 108-145 (254)
213 PF13521 AAA_28: AAA domain; P 86.4 2.7 5.9E-05 29.4 5.6 38 8-52 2-39 (163)
214 TIGR03708 poly_P_AMP_trns poly 86.3 1.3 2.8E-05 38.6 4.7 47 3-49 297-343 (493)
215 PRK13948 shikimate kinase; Pro 86.1 1.8 4E-05 32.3 4.9 52 1-59 6-57 (182)
216 PF00063 Myosin_head: Myosin h 86.0 0.75 1.6E-05 40.2 3.1 25 7-31 87-111 (689)
217 PF00910 RNA_helicase: RNA hel 85.9 0.71 1.5E-05 30.9 2.4 55 8-62 1-62 (107)
218 PRK10436 hypothetical protein; 85.9 0.8 1.7E-05 39.2 3.2 42 3-44 216-257 (462)
219 PRK03992 proteasome-activating 85.9 1 2.2E-05 37.0 3.7 28 4-31 164-191 (389)
220 TIGR00362 DnaA chromosomal rep 85.8 1.1 2.3E-05 36.5 3.7 36 6-41 137-174 (405)
221 PRK06921 hypothetical protein; 85.8 1.3 2.7E-05 34.8 4.0 26 6-31 118-143 (266)
222 cd03115 SRP The signal recogni 85.5 1.3 2.8E-05 31.2 3.7 34 6-39 1-36 (173)
223 cd00550 ArsA_ATPase Oxyanion-t 85.4 1.3 2.8E-05 34.1 3.9 32 7-38 2-35 (254)
224 PRK07261 topology modulation p 85.4 1 2.2E-05 32.7 3.1 24 8-31 3-26 (171)
225 PRK08084 DNA replication initi 85.3 1.3 2.8E-05 33.6 3.8 35 7-41 47-83 (235)
226 cd01394 radB RadB. The archaea 85.0 3.8 8.1E-05 29.9 6.0 39 4-42 18-58 (218)
227 PF13555 AAA_29: P-loop contai 84.9 1.5 3.2E-05 28.3 3.4 25 7-31 25-49 (62)
228 CHL00095 clpC Clp protease ATP 84.8 1.6 3.4E-05 39.3 4.7 54 3-61 537-590 (821)
229 PRK10751 molybdopterin-guanine 84.8 2 4.4E-05 32.3 4.6 34 6-39 7-42 (173)
230 PF04851 ResIII: Type III rest 84.7 5.7 0.00012 26.9 6.4 44 5-49 25-68 (184)
231 PF01935 DUF87: Domain of unkn 84.6 1.3 2.8E-05 32.6 3.4 23 8-30 26-48 (229)
232 PRK04195 replication factor C 84.3 1.6 3.6E-05 36.6 4.3 28 3-30 37-64 (482)
233 PRK08118 topology modulation p 84.3 1.2 2.7E-05 32.2 3.1 24 8-31 4-27 (167)
234 PF00437 T2SE: Type II/IV secr 84.2 1.4 2.9E-05 33.5 3.5 43 5-47 127-169 (270)
235 PRK08727 hypothetical protein; 84.2 1.4 3.1E-05 33.4 3.6 37 7-43 43-81 (233)
236 TIGR01526 nadR_NMN_Atrans nico 84.2 4.3 9.2E-05 32.8 6.5 87 7-100 164-250 (325)
237 TIGR00678 holB DNA polymerase 84.1 1.7 3.8E-05 31.2 3.8 26 5-30 14-39 (188)
238 cd02033 BchX Chlorophyllide re 84.1 1.7 3.8E-05 35.6 4.3 30 2-31 28-57 (329)
239 TIGR02533 type_II_gspE general 84.0 1 2.2E-05 38.6 3.0 41 3-43 240-280 (486)
240 PRK00149 dnaA chromosomal repl 83.9 1.5 3.3E-05 36.3 3.9 35 7-41 150-186 (450)
241 PRK05342 clpX ATP-dependent pr 83.8 1.1 2.5E-05 37.6 3.2 27 5-31 108-134 (412)
242 PF07931 CPT: Chloramphenicol 83.6 1.3 2.8E-05 33.3 3.1 25 7-31 3-27 (174)
243 KOG0635|consensus 83.5 2.6 5.5E-05 33.3 4.8 78 3-90 29-108 (207)
244 PF05729 NACHT: NACHT domain 83.4 1.7 3.6E-05 29.2 3.3 25 7-31 2-26 (166)
245 PF03266 NTPase_1: NTPase; In 83.4 1.4 3.1E-05 32.4 3.2 23 8-30 2-24 (168)
246 PLN02772 guanylate kinase 83.0 1.4 3E-05 37.6 3.4 26 4-29 134-159 (398)
247 PRK09183 transposase/IS protei 83.0 1.9 4.2E-05 33.5 4.0 34 6-39 103-138 (259)
248 TIGR02640 gas_vesic_GvpN gas v 83.0 1.9 4.1E-05 33.3 3.9 25 7-31 23-47 (262)
249 cd02035 ArsA ArsA ATPase funct 82.9 1.9 4E-05 32.2 3.7 32 7-38 1-34 (217)
250 PRK12724 flagellar biosynthesi 82.8 3.6 7.7E-05 35.6 5.8 51 4-55 222-282 (432)
251 TIGR02655 circ_KaiC circadian 82.7 5.5 0.00012 33.7 6.8 58 4-61 20-82 (484)
252 COG2326 Uncharacterized conser 82.6 1.8 4E-05 35.5 3.8 48 2-49 71-118 (270)
253 PRK06526 transposase; Provisio 82.6 2 4.4E-05 33.6 3.9 35 7-41 100-136 (254)
254 TIGR02639 ClpA ATP-dependent C 82.5 2.1 4.6E-05 38.0 4.5 50 4-61 483-532 (731)
255 PF03205 MobB: Molybdopterin g 82.5 2.2 4.7E-05 30.4 3.8 56 7-62 2-67 (140)
256 PF10236 DAP3: Mitochondrial r 82.5 3.1 6.6E-05 33.4 5.0 40 3-42 21-60 (309)
257 cd03116 MobB Molybdenum is an 82.3 2.7 5.9E-05 30.7 4.3 56 7-62 3-68 (159)
258 PRK09825 idnK D-gluconate kina 82.2 1.7 3.8E-05 31.8 3.3 25 7-31 5-29 (176)
259 CHL00095 clpC Clp protease ATP 82.1 4.7 0.0001 36.4 6.5 64 7-84 202-272 (821)
260 PTZ00454 26S protease regulato 82.0 2 4.3E-05 35.9 3.9 35 4-41 178-212 (398)
261 PRK14490 putative bifunctional 82.0 4.5 9.7E-05 32.9 5.9 37 2-38 2-39 (369)
262 PRK00080 ruvB Holliday junctio 82.0 1.6 3.5E-05 34.4 3.2 26 6-31 52-77 (328)
263 PRK12402 replication factor C 82.0 1.6 3.5E-05 33.5 3.1 24 8-31 39-62 (337)
264 TIGR00750 lao LAO/AO transport 81.8 3.1 6.6E-05 32.8 4.7 38 3-40 32-71 (300)
265 COG4088 Predicted nucleotide k 81.7 2.2 4.8E-05 34.9 3.9 33 7-39 3-35 (261)
266 PRK13886 conjugal transfer pro 81.7 1.9 4.1E-05 34.2 3.5 41 4-45 2-44 (241)
267 COG0563 Adk Adenylate kinase a 81.7 1.7 3.7E-05 32.4 3.1 23 8-30 3-25 (178)
268 TIGR00635 ruvB Holliday juncti 81.7 1.7 3.7E-05 33.3 3.1 25 7-31 32-56 (305)
269 TIGR01968 minD_bact septum sit 81.7 2.9 6.4E-05 30.6 4.3 35 4-38 1-37 (261)
270 cd01918 HprK_C HprK/P, the bif 81.5 2.2 4.8E-05 31.6 3.6 22 7-28 16-37 (149)
271 cd00046 DEXDc DEAD-like helica 81.5 6.9 0.00015 24.4 5.5 43 7-49 2-48 (144)
272 PRK09361 radB DNA repair and r 81.4 5 0.00011 29.5 5.5 37 4-40 22-60 (225)
273 PRK06835 DNA replication prote 81.4 2.3 5.1E-05 34.7 4.0 36 6-41 184-221 (329)
274 PRK13477 bifunctional pantoate 81.3 1.6 3.5E-05 38.1 3.2 27 4-30 283-309 (512)
275 PRK06893 DNA replication initi 81.3 2.4 5.2E-05 32.0 3.8 34 7-40 41-76 (229)
276 TIGR02236 recomb_radA DNA repa 81.2 7.1 0.00015 30.5 6.6 57 4-60 94-162 (310)
277 PRK13695 putative NTPase; Prov 81.2 2.2 4.7E-05 30.4 3.4 24 7-30 2-25 (174)
278 TIGR01613 primase_Cterm phage/ 81.2 2 4.3E-05 33.7 3.4 32 4-35 75-106 (304)
279 TIGR02902 spore_lonB ATP-depen 81.1 1.5 3.2E-05 37.8 2.9 21 8-28 89-109 (531)
280 PRK14529 adenylate kinase; Pro 81.1 1.4 3E-05 34.3 2.5 36 8-46 3-38 (223)
281 TIGR02881 spore_V_K stage V sp 81.0 1.8 3.9E-05 33.1 3.1 25 6-30 43-67 (261)
282 PRK05973 replicative DNA helic 81.0 6.3 0.00014 31.0 6.2 55 4-58 63-121 (237)
283 PRK05537 bifunctional sulfate 81.0 1.9 4.1E-05 37.7 3.6 28 4-31 391-418 (568)
284 PRK14489 putative bifunctional 81.0 3.1 6.7E-05 33.9 4.6 32 7-38 207-240 (366)
285 PRK14953 DNA polymerase III su 80.9 2.2 4.7E-05 36.6 3.8 26 5-30 38-63 (486)
286 PF01591 6PF2K: 6-phosphofruct 80.6 3 6.6E-05 32.5 4.3 71 3-77 10-92 (222)
287 CHL00175 minD septum-site dete 80.5 3.6 7.8E-05 31.4 4.6 35 3-37 14-50 (281)
288 PF13476 AAA_23: AAA domain; P 80.4 2.4 5.2E-05 29.3 3.3 26 6-31 20-45 (202)
289 COG1221 PspF Transcriptional r 80.4 1.5 3.1E-05 37.5 2.6 22 7-28 103-124 (403)
290 TIGR01818 ntrC nitrogen regula 80.2 1.9 4.2E-05 34.9 3.2 28 4-31 156-183 (463)
291 PF13177 DNA_pol3_delta2: DNA 80.1 2.4 5.1E-05 30.6 3.3 72 7-79 21-97 (162)
292 cd01123 Rad51_DMC1_radA Rad51_ 80.0 6.1 0.00013 28.9 5.5 58 4-61 18-87 (235)
293 TIGR01241 FtsH_fam ATP-depende 80.0 2.2 4.8E-05 35.9 3.6 32 7-41 90-121 (495)
294 TIGR01243 CDC48 AAA family ATP 80.0 2.4 5.2E-05 37.5 3.9 33 7-42 489-521 (733)
295 PF01637 Arch_ATPase: Archaeal 80.0 1.8 3.9E-05 30.5 2.6 28 4-31 19-46 (234)
296 COG4240 Predicted kinase [Gene 79.8 2.8 6E-05 34.8 3.9 37 4-40 49-86 (300)
297 COG3640 CooC CO dehydrogenase 79.7 2.9 6.3E-05 34.1 4.0 25 7-31 2-26 (255)
298 KOG0735|consensus 79.7 2.2 4.8E-05 40.0 3.7 32 8-42 704-735 (952)
299 TIGR00174 miaA tRNA isopenteny 79.6 2.2 4.8E-05 34.5 3.3 24 7-30 1-24 (287)
300 PRK10536 hypothetical protein; 79.5 3.1 6.6E-05 33.7 4.1 38 7-44 76-114 (262)
301 TIGR01242 26Sp45 26S proteasom 79.4 2.6 5.7E-05 33.8 3.7 27 5-31 156-182 (364)
302 TIGR02397 dnaX_nterm DNA polym 79.3 3 6.5E-05 32.4 3.9 26 5-30 36-61 (355)
303 PF13245 AAA_19: Part of AAA d 79.1 8.4 0.00018 24.9 5.4 46 6-51 11-62 (76)
304 COG0542 clpA ATP-binding subun 78.9 4.3 9.3E-05 37.6 5.3 80 3-87 519-610 (786)
305 PRK00411 cdc6 cell division co 78.8 3.3 7.1E-05 32.8 4.0 34 7-40 57-92 (394)
306 PRK11545 gntK gluconate kinase 78.8 1.8 3.8E-05 31.1 2.3 21 11-31 1-21 (163)
307 TIGR03689 pup_AAA proteasome A 78.7 3 6.6E-05 36.4 4.1 28 4-31 215-242 (512)
308 PF01656 CbiA: CobQ/CobB/MinD/ 78.7 4.1 9E-05 28.3 4.1 41 7-47 1-45 (195)
309 PRK10867 signal recognition pa 78.6 6.3 0.00014 33.7 5.9 52 3-54 98-158 (433)
310 PRK05563 DNA polymerase III su 78.3 2.9 6.4E-05 36.3 3.9 27 4-30 37-63 (559)
311 PLN02318 phosphoribulokinase/u 78.2 3.9 8.4E-05 37.3 4.7 37 3-41 63-99 (656)
312 TIGR00064 ftsY signal recognit 78.1 7.5 0.00016 30.7 5.8 50 5-54 72-129 (272)
313 PRK11034 clpA ATP-dependent Cl 78.1 3.6 7.8E-05 37.4 4.5 23 8-30 210-232 (758)
314 PRK05416 glmZ(sRNA)-inactivati 78.0 3.1 6.8E-05 33.4 3.7 24 4-27 5-28 (288)
315 TIGR02915 PEP_resp_reg putativ 77.9 2.7 5.9E-05 33.9 3.4 25 7-31 164-188 (445)
316 PRK09087 hypothetical protein; 77.9 2.5 5.4E-05 32.3 3.0 31 7-40 46-76 (226)
317 smart00242 MYSc Myosin. Large 77.8 2.1 4.5E-05 38.1 2.9 25 7-31 94-118 (677)
318 PRK15115 response regulator Gl 77.8 2.6 5.7E-05 34.0 3.3 27 5-31 157-183 (444)
319 TIGR01243 CDC48 AAA family ATP 77.8 3.5 7.6E-05 36.5 4.2 35 4-41 211-245 (733)
320 TIGR02525 plasmid_TraJ plasmid 77.6 3.7 7.9E-05 34.3 4.1 43 5-47 149-193 (372)
321 PLN02748 tRNA dimethylallyltra 77.5 3.6 7.8E-05 35.6 4.1 30 1-30 18-47 (468)
322 PRK05428 HPr kinase/phosphoryl 77.3 3.5 7.6E-05 34.0 3.9 65 7-71 148-227 (308)
323 PRK13973 thymidylate kinase; P 77.1 8.8 0.00019 28.6 5.7 42 5-46 3-44 (213)
324 cd01121 Sms Sms (bacterial rad 77.0 6.7 0.00015 32.6 5.5 55 4-58 81-139 (372)
325 cd01378 MYSc_type_I Myosin mot 76.8 2.3 4.9E-05 38.0 2.8 25 7-31 88-112 (674)
326 TIGR02782 TrbB_P P-type conjug 76.6 4.1 8.9E-05 32.6 4.0 40 5-44 132-173 (299)
327 PF03796 DnaB_C: DnaB-like hel 76.6 30 0.00065 26.1 8.6 68 3-70 17-91 (259)
328 cd01377 MYSc_type_II Myosin mo 76.6 2.4 5.2E-05 38.0 2.9 25 7-31 93-117 (693)
329 TIGR03029 EpsG chain length de 76.4 5.2 0.00011 30.4 4.4 36 3-38 102-139 (274)
330 PLN02840 tRNA dimethylallyltra 76.3 3.3 7.2E-05 35.5 3.6 29 3-31 19-47 (421)
331 PF12775 AAA_7: P-loop contain 76.2 7.5 0.00016 30.7 5.3 42 8-49 36-79 (272)
332 KOG3308|consensus 76.2 14 0.0003 29.8 6.8 73 4-79 3-78 (225)
333 PRK11823 DNA repair protein Ra 76.2 8.4 0.00018 32.6 5.9 56 4-59 79-138 (446)
334 PRK14974 cell division protein 76.1 5.2 0.00011 33.0 4.6 51 5-55 140-198 (336)
335 smart00487 DEXDc DEAD-like hel 76.1 13 0.00029 24.6 5.9 44 6-49 25-72 (201)
336 PRK13951 bifunctional shikimat 76.1 9.8 0.00021 32.7 6.4 47 7-60 2-48 (488)
337 PRK11361 acetoacetate metaboli 76.0 3.4 7.4E-05 33.3 3.4 25 6-30 167-191 (457)
338 PF05673 DUF815: Protein of un 76.0 4.9 0.00011 32.5 4.3 39 3-41 50-88 (249)
339 KOG0733|consensus 75.6 2.7 5.9E-05 38.8 3.0 36 4-42 222-257 (802)
340 cd03110 Fer4_NifH_child This p 75.6 5.1 0.00011 28.3 3.9 23 7-29 2-24 (179)
341 PRK13949 shikimate kinase; Pro 75.6 11 0.00023 27.4 5.6 59 8-74 4-62 (169)
342 PRK05818 DNA polymerase III su 75.5 3.4 7.3E-05 33.4 3.3 72 1-76 3-80 (261)
343 PRK06645 DNA polymerase III su 75.5 3 6.5E-05 36.2 3.2 24 7-30 45-68 (507)
344 PF01580 FtsK_SpoIIIE: FtsK/Sp 75.5 5.2 0.00011 29.0 4.0 24 8-31 41-64 (205)
345 PRK14970 DNA polymerase III su 75.4 4.5 9.7E-05 32.2 3.9 27 5-31 39-65 (367)
346 cd03114 ArgK-like The function 75.4 4.1 8.9E-05 29.1 3.4 25 7-31 1-25 (148)
347 PF10443 RNA12: RNA12 protein; 75.3 2 4.3E-05 37.2 2.0 21 2-22 14-34 (431)
348 PRK08691 DNA polymerase III su 75.1 2.9 6.3E-05 38.2 3.1 26 5-30 38-63 (709)
349 PHA00520 packaging NTPase P4 75.1 3.4 7.4E-05 34.8 3.3 39 7-45 126-165 (330)
350 PRK14965 DNA polymerase III su 75.0 4 8.6E-05 35.6 3.8 26 5-30 38-63 (576)
351 PRK14961 DNA polymerase III su 75.0 3.3 7.2E-05 33.5 3.1 25 6-30 39-63 (363)
352 cd02038 FleN-like FleN is a me 75.0 4.4 9.6E-05 28.1 3.4 26 6-31 1-26 (139)
353 PTZ00361 26 proteosome regulat 74.9 5.1 0.00011 34.2 4.3 28 4-31 216-243 (438)
354 cd00124 MYSc Myosin motor doma 74.9 2.9 6.2E-05 37.2 2.9 25 7-31 88-112 (679)
355 PRK13975 thymidylate kinase; P 74.9 5.2 0.00011 28.5 3.8 26 6-31 3-28 (196)
356 PF03215 Rad17: Rad17 cell cyc 74.8 3.8 8.2E-05 35.7 3.6 28 4-31 44-71 (519)
357 TIGR00382 clpX endopeptidase C 74.5 3.3 7.2E-05 35.2 3.1 26 5-30 116-141 (413)
358 PRK10733 hflB ATP-dependent me 74.4 3.9 8.5E-05 36.0 3.6 31 8-41 188-218 (644)
359 COG1493 HprK Serine kinase of 74.2 3.2 7E-05 34.6 2.9 22 8-29 148-169 (308)
360 PLN02199 shikimate kinase 74.0 7.3 0.00016 32.3 4.9 48 7-60 104-151 (303)
361 COG0497 RecN ATPase involved i 73.8 5.9 0.00013 35.3 4.6 49 8-56 25-87 (557)
362 PRK09435 membrane ATPase/prote 73.7 7.2 0.00016 32.1 4.8 38 3-40 54-93 (332)
363 PF01078 Mg_chelatase: Magnesi 73.6 3 6.5E-05 32.6 2.5 24 8-31 25-48 (206)
364 cd01673 dNK Deoxyribonucleosid 73.6 4 8.6E-05 29.2 2.9 24 7-30 1-24 (193)
365 PRK09112 DNA polymerase III su 73.4 3.7 8E-05 33.7 3.1 25 7-31 47-71 (351)
366 PRK13531 regulatory ATPase Rav 73.4 6.7 0.00015 34.5 4.8 52 8-64 42-97 (498)
367 COG1373 Predicted ATPase (AAA+ 73.3 3.9 8.4E-05 34.0 3.2 28 4-32 37-64 (398)
368 PRK14969 DNA polymerase III su 73.2 4.9 0.00011 34.7 3.9 26 5-30 38-63 (527)
369 PRK13768 GTPase; Provisional 72.8 7.5 0.00016 30.0 4.5 34 6-39 3-38 (253)
370 PRK14722 flhF flagellar biosyn 72.8 14 0.0003 31.1 6.4 60 5-64 137-206 (374)
371 TIGR02928 orc1/cdc6 family rep 72.7 4.2 9.2E-05 31.8 3.1 25 7-31 42-66 (365)
372 PRK06620 hypothetical protein; 72.5 3.7 8E-05 31.1 2.7 25 6-30 45-69 (214)
373 cd01384 MYSc_type_XI Myosin mo 72.4 3.5 7.6E-05 37.0 2.9 24 7-30 90-113 (674)
374 PHA00350 putative assembly pro 72.3 5.9 0.00013 33.7 4.1 35 7-41 3-39 (399)
375 PRK14958 DNA polymerase III su 72.2 4 8.7E-05 35.2 3.1 25 6-30 39-63 (509)
376 PF02374 ArsA_ATPase: Anion-tr 72.1 6.5 0.00014 31.5 4.1 33 7-39 3-37 (305)
377 cd01387 MYSc_type_XV Myosin mo 72.1 3.2 6.8E-05 37.2 2.6 24 7-30 89-112 (677)
378 PRK13342 recombination factor 72.0 7.2 0.00016 32.0 4.5 25 7-31 38-62 (413)
379 PRK14962 DNA polymerase III su 72.0 4.2 9E-05 34.8 3.2 25 7-31 38-62 (472)
380 PHA02624 large T antigen; Prov 72.0 6.1 0.00013 36.0 4.3 37 4-43 430-466 (647)
381 TIGR00959 ffh signal recogniti 71.9 7.8 0.00017 33.0 4.8 52 4-55 98-158 (428)
382 PTZ00322 6-phosphofructo-2-kin 71.9 5.6 0.00012 35.0 4.0 36 4-39 214-251 (664)
383 cd01994 Alpha_ANH_like_IV This 71.8 17 0.00036 27.4 6.1 73 5-82 1-87 (194)
384 CHL00176 ftsH cell division pr 71.7 5.1 0.00011 35.7 3.7 32 7-41 218-249 (638)
385 PLN03181 glycosyltransferase; 71.7 5.6 0.00012 34.9 3.9 35 5-55 128-168 (453)
386 PF08477 Miro: Miro-like prote 71.6 2.8 6E-05 27.1 1.6 21 8-28 2-22 (119)
387 PRK04301 radA DNA repair and r 71.6 18 0.00039 28.6 6.5 58 4-61 101-170 (317)
388 TIGR02524 dot_icm_DotB Dot/Icm 71.6 6.2 0.00013 32.6 4.0 42 3-44 132-176 (358)
389 PF13679 Methyltransf_32: Meth 71.5 4.4 9.5E-05 28.3 2.7 26 14-39 32-59 (141)
390 KOG1970|consensus 71.5 5 0.00011 36.4 3.6 37 4-43 109-145 (634)
391 PF07475 Hpr_kinase_C: HPr Ser 71.3 7 0.00015 29.9 4.0 21 8-28 21-41 (171)
392 cd01385 MYSc_type_IX Myosin mo 71.3 3.8 8.2E-05 36.8 2.9 24 7-30 96-119 (692)
393 KOG3354|consensus 71.3 5.9 0.00013 31.1 3.6 31 1-31 8-38 (191)
394 PRK13833 conjugal transfer pro 71.2 6.8 0.00015 32.2 4.1 38 6-43 145-184 (323)
395 KOG2878|consensus 71.0 3.3 7.1E-05 34.0 2.2 27 5-31 31-57 (282)
396 PF05496 RuvB_N: Holliday junc 70.9 5.5 0.00012 31.9 3.4 33 8-43 53-85 (233)
397 PRK13764 ATPase; Provisional 70.8 5.9 0.00013 35.4 3.9 38 6-43 258-295 (602)
398 cd02037 MRP-like MRP (Multiple 70.7 6.8 0.00015 27.6 3.6 33 6-38 1-35 (169)
399 cd01130 VirB11-like_ATPase Typ 70.6 6 0.00013 28.7 3.4 39 4-43 24-62 (186)
400 KOG0737|consensus 70.6 6.1 0.00013 34.0 3.8 48 1-49 123-170 (386)
401 PF02367 UPF0079: Uncharacteri 70.5 7.4 0.00016 27.9 3.7 58 3-61 13-74 (123)
402 TIGR00679 hpr-ser Hpr(Ser) kin 70.3 6.7 0.00014 32.4 3.9 66 6-71 147-227 (304)
403 cd01382 MYSc_type_VI Myosin mo 70.2 4.3 9.3E-05 36.6 3.0 23 7-29 93-115 (717)
404 TIGR01425 SRP54_euk signal rec 70.2 9 0.0002 32.8 4.8 52 4-56 99-159 (429)
405 PRK13851 type IV secretion sys 70.0 4.5 9.7E-05 33.4 2.9 39 4-43 161-199 (344)
406 PF13086 AAA_11: AAA domain; P 69.7 13 0.00028 26.0 4.8 24 6-29 18-41 (236)
407 PLN02165 adenylate isopentenyl 69.6 5.6 0.00012 33.2 3.3 29 2-30 40-68 (334)
408 PF09140 MipZ: ATPase MipZ; I 69.6 14 0.00031 30.2 5.6 52 5-56 1-63 (261)
409 COG0324 MiaA tRNA delta(2)-iso 69.4 6.9 0.00015 32.3 3.8 45 5-49 3-57 (308)
410 cd01379 MYSc_type_III Myosin m 69.3 4.8 0.0001 36.0 3.1 23 7-29 88-110 (653)
411 PLN03025 replication factor C 69.2 5.6 0.00012 31.3 3.2 22 8-29 37-58 (319)
412 PRK14951 DNA polymerase III su 69.0 5.1 0.00011 35.8 3.2 25 6-30 39-63 (618)
413 PRK00771 signal recognition pa 69.0 8.2 0.00018 32.9 4.3 36 4-39 94-131 (437)
414 TIGR00420 trmU tRNA (5-methyla 68.9 32 0.00069 28.3 7.6 79 5-93 2-104 (352)
415 PRK14957 DNA polymerase III su 68.9 6.9 0.00015 34.4 3.9 25 6-30 39-63 (546)
416 PRK12422 chromosomal replicati 68.7 6.7 0.00015 33.2 3.7 36 6-41 142-177 (445)
417 COG1936 Predicted nucleotide k 68.6 9.6 0.00021 29.7 4.2 38 7-53 2-39 (180)
418 cd01380 MYSc_type_V Myosin mot 68.6 4.8 0.0001 36.1 2.9 24 7-30 88-111 (691)
419 PF13481 AAA_25: AAA domain; P 68.6 9.6 0.00021 26.8 4.0 27 5-31 32-58 (193)
420 cd01381 MYSc_type_VII Myosin m 68.5 4.3 9.4E-05 36.3 2.6 24 7-30 88-111 (671)
421 cd01122 GP4d_helicase GP4d_hel 68.4 15 0.00032 27.6 5.2 53 4-56 29-88 (271)
422 PRK06305 DNA polymerase III su 68.1 7.3 0.00016 33.0 3.8 26 5-30 39-64 (451)
423 CHL00195 ycf46 Ycf46; Provisio 68.1 5.6 0.00012 34.3 3.2 24 7-30 261-284 (489)
424 TIGR01650 PD_CobS cobaltochela 68.1 8.6 0.00019 32.0 4.1 25 7-31 66-90 (327)
425 TIGR03018 pepcterm_TyrKin exop 68.0 10 0.00023 27.8 4.2 28 3-30 34-61 (207)
426 COG1219 ClpX ATP-dependent pro 67.9 5.7 0.00012 34.3 3.1 25 6-30 98-122 (408)
427 COG0283 Cmk Cytidylate kinase 67.7 7.9 0.00017 31.0 3.7 47 6-56 5-54 (222)
428 TIGR03346 chaperone_ClpB ATP-d 67.7 20 0.00043 32.7 6.6 64 4-81 193-263 (852)
429 TIGR01969 minD_arch cell divis 67.7 10 0.00022 27.7 4.0 27 5-31 1-27 (251)
430 cd02032 Bchl_like This family 67.5 9.5 0.00021 28.8 4.0 25 7-31 2-26 (267)
431 PRK13894 conjugal transfer ATP 67.5 8.6 0.00019 31.3 4.0 40 4-43 147-188 (319)
432 cd01383 MYSc_type_VIII Myosin 67.5 4.8 0.0001 36.1 2.7 24 7-30 94-117 (677)
433 PRK14956 DNA polymerase III su 67.4 5.5 0.00012 34.8 3.0 25 7-31 42-66 (484)
434 PF06068 TIP49: TIP49 C-termin 67.3 8.2 0.00018 33.3 3.9 34 7-41 52-85 (398)
435 cd04163 Era Era subfamily. Er 67.3 4.8 0.0001 26.2 2.1 22 5-26 3-24 (168)
436 PRK14494 putative molybdopteri 67.2 10 0.00022 29.8 4.2 32 7-38 3-36 (229)
437 PRK10416 signal recognition pa 67.2 15 0.00033 29.8 5.3 51 4-55 113-172 (318)
438 PRK08099 bifunctional DNA-bind 67.1 18 0.00039 30.3 5.9 87 7-99 221-307 (399)
439 TIGR00416 sms DNA repair prote 67.0 21 0.00046 30.3 6.4 56 4-59 93-152 (454)
440 COG3604 FhlA Transcriptional r 66.9 5.1 0.00011 35.9 2.7 34 4-37 245-285 (550)
441 PRK14087 dnaA chromosomal repl 66.9 8.6 0.00019 32.5 4.0 33 8-40 144-178 (450)
442 cd03283 ABC_MutS-like MutS-lik 66.8 3.9 8.4E-05 30.5 1.7 21 6-26 26-46 (199)
443 cd02117 NifH_like This family 66.6 10 0.00023 27.8 4.0 25 7-31 2-26 (212)
444 PRK08699 DNA polymerase III su 66.5 6.6 0.00014 31.9 3.1 24 7-30 23-46 (325)
445 COG2074 2-phosphoglycerate kin 66.5 10 0.00022 31.7 4.2 58 4-64 88-145 (299)
446 PRK14950 DNA polymerase III su 66.2 6.4 0.00014 34.2 3.2 24 7-30 40-63 (585)
447 PF00005 ABC_tran: ABC transpo 66.2 7.1 0.00015 26.0 2.8 27 5-31 11-37 (137)
448 PRK14665 mnmA tRNA-specific 2- 66.0 29 0.00062 28.9 6.8 82 2-93 4-101 (360)
449 PRK07994 DNA polymerase III su 66.0 6 0.00013 35.6 3.0 25 7-31 40-64 (647)
450 TIGR02788 VirB11 P-type DNA tr 65.9 7.2 0.00016 30.9 3.2 36 4-40 143-178 (308)
451 TIGR02238 recomb_DMC1 meiotic 65.8 20 0.00043 29.1 5.7 58 4-61 95-164 (313)
452 PRK11784 tRNA 2-selenouridine 65.8 5.5 0.00012 32.9 2.6 24 5-28 141-164 (345)
453 cd03221 ABCF_EF-3 ABCF_EF-3 E 65.7 7.2 0.00016 27.3 2.8 26 5-30 26-51 (144)
454 TIGR02237 recomb_radB DNA repa 65.6 12 0.00026 27.0 4.1 38 4-41 11-50 (209)
455 PF13479 AAA_24: AAA domain 65.6 6 0.00013 29.5 2.6 22 4-25 2-23 (213)
456 PRK09518 bifunctional cytidyla 65.5 7.8 0.00017 34.4 3.6 24 7-30 3-26 (712)
457 COG4619 ABC-type uncharacteriz 65.5 8.1 0.00017 31.0 3.3 25 7-31 31-55 (223)
458 PTZ00014 myosin-A; Provisional 65.3 6 0.00013 36.5 2.9 23 7-29 185-207 (821)
459 PRK14088 dnaA chromosomal repl 65.3 9.6 0.00021 32.0 4.0 24 8-31 133-156 (440)
460 TIGR00764 lon_rel lon-related 65.3 8.6 0.00019 33.9 3.8 58 7-70 39-97 (608)
461 PHA02244 ATPase-like protein 65.3 9.6 0.00021 32.6 4.0 24 8-31 122-145 (383)
462 PRK07399 DNA polymerase III su 65.3 7.7 0.00017 31.3 3.3 25 6-30 27-51 (314)
463 PRK06647 DNA polymerase III su 65.2 7.1 0.00015 34.2 3.3 26 5-30 38-63 (563)
464 TIGR03436 acidobact_VWFA VWFA- 65.1 30 0.00066 26.6 6.4 52 2-54 163-234 (296)
465 PRK14959 DNA polymerase III su 64.9 6.5 0.00014 35.4 3.0 24 7-30 40-63 (624)
466 PLN03187 meiotic recombination 64.7 25 0.00055 29.1 6.2 58 4-61 125-194 (344)
467 PRK10584 putative ABC transpor 64.3 8 0.00017 28.4 3.0 24 7-30 38-61 (228)
468 PRK08058 DNA polymerase III su 64.3 9.5 0.00021 30.6 3.6 27 4-30 27-53 (329)
469 PRK06871 DNA polymerase III su 64.2 7.7 0.00017 31.8 3.1 25 6-30 25-49 (325)
470 TIGR00665 DnaB replicative DNA 64.1 74 0.0016 26.1 8.8 65 4-68 194-265 (434)
471 PTZ00035 Rad51 protein; Provis 64.0 22 0.00047 29.0 5.7 60 4-63 117-188 (337)
472 TIGR03371 cellulose_yhjQ cellu 63.9 14 0.0003 27.0 4.2 35 5-39 2-38 (246)
473 PRK08451 DNA polymerase III su 63.9 7.8 0.00017 34.1 3.3 25 6-30 37-61 (535)
474 COG1660 Predicted P-loop-conta 63.9 4.4 9.5E-05 33.6 1.6 13 7-19 3-15 (286)
475 PRK12269 bifunctional cytidyla 63.8 9.2 0.0002 35.5 3.9 27 4-30 33-59 (863)
476 cd02036 MinD Bacterial cell di 63.7 12 0.00025 25.8 3.5 33 6-38 1-35 (179)
477 PRK14261 phosphate ABC transpo 63.6 8 0.00017 29.0 2.9 25 5-29 32-56 (253)
478 cd03273 ABC_SMC2_euk Eukaryoti 63.3 10 0.00023 28.6 3.5 25 7-31 27-51 (251)
479 PF00308 Bac_DnaA: Bacterial d 63.3 11 0.00024 28.5 3.7 34 7-40 36-71 (219)
480 PRK10247 putative ABC transpor 63.2 8.5 0.00019 28.5 3.0 24 6-29 34-57 (225)
481 COG1763 MobB Molybdopterin-gua 63.0 13 0.00029 27.8 4.0 35 6-40 3-39 (161)
482 PRK14960 DNA polymerase III su 62.9 7.7 0.00017 35.6 3.1 26 5-30 37-62 (702)
483 PRK14964 DNA polymerase III su 62.9 7.9 0.00017 33.7 3.1 23 7-29 37-59 (491)
484 cd01386 MYSc_type_XVIII Myosin 62.4 7.4 0.00016 35.5 3.0 24 7-30 88-111 (767)
485 TIGR02442 Cob-chelat-sub cobal 62.4 7.3 0.00016 34.3 2.8 22 8-29 28-49 (633)
486 PF04665 Pox_A32: Poxvirus A32 62.3 14 0.00031 29.3 4.2 35 6-40 14-48 (241)
487 COG0003 ArsA Predicted ATPase 62.3 13 0.00028 30.6 4.1 32 6-37 3-36 (322)
488 smart00389 HOX Homeodomain. DN 62.0 28 0.00061 20.0 5.4 49 17-83 7-55 (56)
489 cd03233 ABC_PDR_domain1 The pl 61.7 8.1 0.00017 28.3 2.6 27 4-30 32-58 (202)
490 PRK05896 DNA polymerase III su 61.6 8.6 0.00019 34.5 3.1 25 6-30 39-63 (605)
491 PRK14491 putative bifunctional 61.4 15 0.00033 32.4 4.6 33 6-38 11-45 (597)
492 TIGR02746 TraC-F-type type-IV 61.3 11 0.00023 33.2 3.6 24 8-31 433-456 (797)
493 cd03216 ABC_Carb_Monos_I This 61.3 10 0.00022 26.9 2.9 26 5-30 26-51 (163)
494 PF02263 GBP: Guanylate-bindin 61.1 11 0.00023 29.4 3.3 27 2-28 18-44 (260)
495 PRK07133 DNA polymerase III su 61.0 9.2 0.0002 35.0 3.3 26 5-30 40-65 (725)
496 PRK05564 DNA polymerase III su 61.0 12 0.00026 29.3 3.6 26 5-30 26-51 (313)
497 PRK13541 cytochrome c biogenes 60.8 10 0.00022 27.4 2.9 26 5-30 26-51 (195)
498 TIGR00763 lon ATP-dependent pr 60.7 13 0.00028 33.5 4.1 25 7-31 349-373 (775)
499 TIGR01287 nifH nitrogenase iro 60.6 15 0.00032 28.0 3.9 25 7-31 2-26 (275)
500 PRK14086 dnaA chromosomal repl 60.5 11 0.00025 33.9 3.7 35 7-41 316-352 (617)
No 1
>PF04275 P-mevalo_kinase: Phosphomevalonate kinase ; InterPro: IPR005919 Phosphomevalonate kinase (2.7.4.2 from EC) catalyzes the phosphorylation of 5-phosphomevalonate into 5-diphosphomevalonate, an essential step in isoprenoid biosynthesis via the mevalonate pathway. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found - the higher eukaryotic form and the ERG8 type. This model represents the form of the enzyme found in animals. ; GO: 0004631 phosphomevalonate kinase activity, 0006695 cholesterol biosynthetic process, 0005737 cytoplasm; PDB: 3CH4_B.
Probab=100.00 E-value=1.2e-50 Score=290.70 Aligned_cols=86 Identities=50% Similarity=0.953 Sum_probs=67.1
Q ss_pred EecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHHHcCccHHHhcCCCCcHHHhHHHHHHHHHHHhccChhhhHH
Q psy4713 10 FSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQNGLEMDKLLGATKYKEKYRAEMITWSEAERRKDNGCFIR 89 (103)
Q Consensus 10 ~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~~~glDl~~LL~d~~YKE~~R~~mi~wge~~R~~D~g~Fcr 89 (103)
|||||||||||||++|+++|++..+.|||||+|||++||++|||||++||+|++|||+||++||+|||++|++|||||||
T Consensus 1 ~sGkrksGKDy~a~~l~~~l~~~~~~iv~iS~p~K~~yA~~~glDl~~LL~d~~YKE~~R~~mi~w~e~~r~~dp~~Fcr 80 (116)
T PF04275_consen 1 FSGKRKSGKDYCADILASRLGEDNCRIVSISDPIKREYAEAHGLDLDRLLSDRAYKEQYRPDMIAWGEEQRNQDPGFFCR 80 (116)
T ss_dssp EEE-TTSSHHHHHHHHHHHH-TTTEEEE-THHHHHHHHHHTTT-------------SSHHHHHHHHHHHHHHH-TTTTHH
T ss_pred CCCCcCCCchHHHHHHHHHHhhccCcEEEechHHHHHHHHHhCcCHHHHhcCcchHHHHHHHHHHHHHHHHhhCcchHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH
Q psy4713 90 SAIEMA 95 (103)
Q Consensus 90 ~~~~~~ 95 (103)
++++++
T Consensus 81 ~a~~~~ 86 (116)
T PF04275_consen 81 AAVEEA 86 (116)
T ss_dssp HHSBT-
T ss_pred HHHHhh
Confidence 999887
No 2
>TIGR01223 Pmev_kin_anim phosphomevalonate kinase, animal type. This enzyme is part of the mevalonate pathway, one of two alternative pathways for the biosynthesis of IPP. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found. One is this type, found in animals. The other is the ERG8 type, found in plants and fungi (TIGR01219) and in Gram-positive bacteria (TIGR01220).
Probab=100.00 E-value=1.5e-43 Score=269.61 Aligned_cols=89 Identities=48% Similarity=0.931 Sum_probs=86.0
Q ss_pred EEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHHHcCccHHHhcCCCCcHHHhHHHHHHHHHHHhccChhh
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQNGLEMDKLLGATKYKEKYRAEMITWSEAERRKDNGC 86 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~~~glDl~~LL~d~~YKE~~R~~mi~wge~~R~~D~g~ 86 (103)
||||||||||||||||+.|.++|+..+|.++|||+|||++||.+||||+++||+|++|||+||++||.|||++|++||||
T Consensus 1 iilisGKrksGKD~~a~~l~~~l~~~~~~~vriS~piK~~~A~~~gld~~~Ll~d~~YKE~~R~~mi~w~e~~r~~dp~~ 80 (182)
T TIGR01223 1 VLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPLKEQYAQEHGLNFQRLLDTSTYKEAFRKDMIRWGEEKRQADPGF 80 (182)
T ss_pred CEEEecCCCCChHHHHHHHHHhhccccceEEEecHHHHHHHHHHhChhHHHhcCCcccchhhhHHHHHHHHHHHhhCccH
Confidence 79999999999999999999999988899999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHH
Q psy4713 87 FIRSAIEMA 95 (103)
Q Consensus 87 Fcr~~~~~~ 95 (103)
|||.+++.+
T Consensus 81 F~r~~~~~~ 89 (182)
T TIGR01223 81 FCRKIVEGI 89 (182)
T ss_pred HHHHHHhcc
Confidence 999998654
No 3
>PHA02575 1 deoxynucleoside monophosphate kinase; Provisional
Probab=98.49 E-value=5.9e-07 Score=70.83 Aligned_cols=86 Identities=28% Similarity=0.429 Sum_probs=63.1
Q ss_pred EEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHHHc------------Ccc--------HH---------
Q psy4713 6 LILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQN------------GLE--------MD--------- 56 (103)
Q Consensus 6 lIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~~~------------glD--------l~--------- 56 (103)
.||.+||+.|||||=++..+.+.- .+..+++++|+|+.-+... |+. ++
T Consensus 1 miI~i~G~~gsGKstva~~~~~~g---~~~~~~~~d~ik~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~dre~~l~~~~ 77 (227)
T PHA02575 1 MLIAISGKKRSGKDTVADFIIENY---NAVKYQLADPIKEILAIAMGRYGADDLMFVPGLTYDDFDGIGYDREAPLPLSN 77 (227)
T ss_pred CEEEEeCCCCCCHHHHHHHHHhcC---CcEEEehhHHHHHHHHHHHHHhcccCccccCCcccccccCcCccccCCCcCCH
Confidence 389999999999999999998773 2333999999999876652 222 11
Q ss_pred -----------HhcCCCC--------cHHHh------------HHHHHHHHHH-HhccChhhhHHHHHHH
Q psy4713 57 -----------KLLGATK--------YKEKY------------RAEMITWSEA-ERRKDNGCFIRSAIEM 94 (103)
Q Consensus 57 -----------~LL~d~~--------YKE~~------------R~~mi~wge~-~R~~D~g~Fcr~~~~~ 94 (103)
.+|.+.. |.+.| |.-|-.||.+ .|+.||+|||+.+++.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SiR~llQ~~GTd~~R~~d~~~Wvr~a~~~ 147 (227)
T PHA02575 78 EDVIRIFEQALMLLNDKGTCYLLYAHYDKVYEIILNNNNPWSIRRLMQTLGTDIVVNFNKMYWVKLFALK 147 (227)
T ss_pred HHHHHHHHHHHHHHhccccceeeecchHHHHHHHcCCCCCCCHHHHHHHhcCceeeecCcCHhHHHHHHH
Confidence 1232322 44443 7889999966 5999999999998865
No 4
>PRK08356 hypothetical protein; Provisional
Probab=97.68 E-value=3.5e-05 Score=56.45 Aligned_cols=76 Identities=18% Similarity=0.180 Sum_probs=49.0
Q ss_pred CCCCeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHHHcCccHHHhcCCCCcHHHhHHHHHHHHHHHh
Q psy4713 1 MTQPKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQNGLEMDKLLGATKYKEKYRAEMITWSEAER 80 (103)
Q Consensus 1 ~~~pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~~~glDl~~LL~d~~YKE~~R~~mi~wge~~R 80 (103)
|..+..+|+|+|..||||+-+++.|.+ + .+.+++..+++++.... +|.|+.=+-....-...-+.+++.||+..+
T Consensus 1 ~~~~~~~i~~~G~~gsGK~t~a~~l~~-~---g~~~is~~~~~~~~~~~-~~~~~~f~~~~~~~~~~~~~~~~e~g~~~~ 75 (195)
T PRK08356 1 MGVEKMIVGVVGKIAAGKTTVAKFFEE-K---GFCRVSCSDPLIDLLTH-NVSDYSWVPEVPFKGEPTRENLIELGRYLK 75 (195)
T ss_pred CCCCcEEEEEECCCCCCHHHHHHHHHH-C---CCcEEeCCCcccccccc-cccccccccHHHHhhccccccHHHHHHHHH
Confidence 677888999999999999999999953 4 45689999988874433 333321000000001113457788887776
Q ss_pred c
Q psy4713 81 R 81 (103)
Q Consensus 81 ~ 81 (103)
+
T Consensus 76 ~ 76 (195)
T PRK08356 76 E 76 (195)
T ss_pred H
Confidence 5
No 5
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.27 E-value=0.00061 Score=49.90 Aligned_cols=40 Identities=25% Similarity=0.425 Sum_probs=34.6
Q ss_pred CCCCeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecc
Q psy4713 1 MTQPKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLS 40 (103)
Q Consensus 1 ~~~pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS 40 (103)
|+++..||.|+|.+||||-.+++.|...++...+.+++.-
T Consensus 2 ~~~~~~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D 41 (209)
T PRK05480 2 MMKKPIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQD 41 (209)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCC
Confidence 7788999999999999999999999999965566666663
No 6
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.11 E-value=0.0024 Score=44.09 Aligned_cols=49 Identities=18% Similarity=0.288 Sum_probs=36.0
Q ss_pred CCeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHHHcCccHHHh
Q psy4713 3 QPKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQNGLEMDKL 58 (103)
Q Consensus 3 ~pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~~~glDl~~L 58 (103)
+|..+|+|+|.+||||-.++..|++.++ ...+.....++ +..|.++.++
T Consensus 2 ~~~~~i~l~G~~GsGKstla~~La~~l~---~~~~d~d~~~~----~~~g~~~~~~ 50 (175)
T PRK00131 2 LKGPNIVLIGFMGAGKSTIGRLLAKRLG---YDFIDTDHLIE----ARAGKSIPEI 50 (175)
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHhC---CCEEEChHHHH----HHcCCCHHHH
Confidence 4455888999999999999999999986 45556555543 3446666554
No 7
>PRK06696 uridine kinase; Validated
Probab=96.95 E-value=0.0014 Score=49.11 Aligned_cols=38 Identities=32% Similarity=0.364 Sum_probs=32.0
Q ss_pred CCeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecc
Q psy4713 3 QPKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLS 40 (103)
Q Consensus 3 ~pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS 40 (103)
..++||.|+|-+||||-.+|+.|++.|+...+.++.||
T Consensus 20 ~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~ 57 (223)
T PRK06696 20 TRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRAS 57 (223)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEec
Confidence 45789999999999999999999999976445666655
No 8
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.94 E-value=0.0016 Score=43.09 Aligned_cols=32 Identities=34% Similarity=0.610 Sum_probs=29.3
Q ss_pred EEEEecCcCCchhHHHHHHHHHhcccceEEEecch
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSA 41 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~ 41 (103)
||+|+|.+||||-.++..|++.++ +.++++++
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~---~~~i~~d~ 32 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLG---FPVISMDD 32 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT---CEEEEEHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHHC---CeEEEecc
Confidence 789999999999999999999984 77888888
No 9
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=96.89 E-value=0.0027 Score=43.99 Aligned_cols=48 Identities=25% Similarity=0.404 Sum_probs=37.2
Q ss_pred EEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHHHcCccHHHh
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQNGLEMDKL 58 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~~~glDl~~L 58 (103)
||.|+|..||||..++..+++.++ +.+++..+-.++ .++..|.+...+
T Consensus 2 iI~i~G~~GSGKstia~~la~~lg---~~~~~~~~~~~~-~~~~~g~~~~~~ 49 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKLS---LKLISAGDIFRE-LAAKMGLDLIEF 49 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC---CceecHHHHHHH-HHHHcCCCHHHH
Confidence 899999999999999999999985 445665554544 467778877664
No 10
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.75 E-value=0.0029 Score=48.99 Aligned_cols=51 Identities=22% Similarity=0.397 Sum_probs=43.5
Q ss_pred EEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHHHcCccHHHhcC
Q psy4713 6 LILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQNGLEMDKLLG 60 (103)
Q Consensus 6 lIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~~~glDl~~LL~ 60 (103)
.+|.|||+.||||-=+|..|++.+|= .+ + =||-+=|+.|+++|+|+.+...
T Consensus 1 m~ItIsG~pGsG~TTva~~lAe~~gl-~~--v-saG~iFR~~A~e~gmsl~ef~~ 51 (179)
T COG1102 1 MVITISGLPGSGKTTVARELAEHLGL-KL--V-SAGTIFREMARERGMSLEEFSR 51 (179)
T ss_pred CEEEeccCCCCChhHHHHHHHHHhCC-ce--e-eccHHHHHHHHHcCCCHHHHHH
Confidence 37899999999999999999999983 22 2 2688999999999999998754
No 11
>PRK01184 hypothetical protein; Provisional
Probab=96.57 E-value=0.0051 Score=43.99 Aligned_cols=40 Identities=18% Similarity=0.254 Sum_probs=33.1
Q ss_pred EEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHH
Q psy4713 6 LILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAK 49 (103)
Q Consensus 6 lIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~ 49 (103)
.||+++|..||||..++. +.+.+ .+.+++.++-+++++..
T Consensus 2 ~~i~l~G~~GsGKsT~a~-~~~~~---g~~~i~~~d~lr~~~~~ 41 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSK-IAREM---GIPVVVMGDVIREEVKK 41 (184)
T ss_pred cEEEEECCCCCCHHHHHH-HHHHc---CCcEEEhhHHHHHHHHH
Confidence 389999999999999987 45554 47889999999998754
No 12
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.53 E-value=0.0037 Score=44.30 Aligned_cols=39 Identities=15% Similarity=0.271 Sum_probs=34.6
Q ss_pred EEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHH
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWA 48 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA 48 (103)
||+|.|.+||||.-++..|++.++ +..++.++-++++..
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~~---~~~is~~d~lr~~~~ 39 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENFG---FTHLSAGDLLRAEIK 39 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcC---CeEEECChHHHHHHh
Confidence 689999999999999999999985 778888888887766
No 13
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.50 E-value=0.011 Score=39.89 Aligned_cols=30 Identities=30% Similarity=0.579 Sum_probs=25.5
Q ss_pred EEEEecCcCCchhHHHHHHHHHhcccceEEEec
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRL 39 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~i 39 (103)
||++.|..||||.+++..|.+.++ +.+|+.
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~---~~~i~~ 30 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG---AVVISQ 30 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST---EEEEEH
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC---CEEEeH
Confidence 689999999999999999999986 445544
No 14
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.45 E-value=0.011 Score=41.61 Aligned_cols=54 Identities=19% Similarity=0.176 Sum_probs=41.5
Q ss_pred EEEEecCcCCchhHHHHHHHHHhcc--cceEEEecchhhHH--HHHHHcCccHHHhcC
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRLSAPIKS--HWAKQNGLEMDKLLG 60 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~iS~piK~--~yA~~~glDl~~LL~ 60 (103)
++||+|..|+||--++-.+....-. ..|..+++.++..+ +++...|.|++++..
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~~~~~~~~~g~~~~~l~~ 58 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEELIENAESLGWDLERLED 58 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHcCCChHHHHh
Confidence 5899999999999988766554322 67888999877765 456678999988753
No 15
>PRK15453 phosphoribulokinase; Provisional
Probab=96.43 E-value=0.0043 Score=50.69 Aligned_cols=38 Identities=13% Similarity=0.274 Sum_probs=32.3
Q ss_pred CCCCeEEEEEecCcCCchhHHHHHHHHHhccc--ceEEEe
Q psy4713 1 MTQPKLILLFSGKRKSGKDFLTDYLLERIGSQ--HCAIIR 38 (103)
Q Consensus 1 ~~~pklIiL~sGKrksGKDy~a~~l~~~l~~~--~~~iv~ 38 (103)
|+.++.||.|+|-+||||--+++.+...|+.. .+.++.
T Consensus 1 Ms~k~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~ 40 (290)
T PRK15453 1 MSAKHPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVE 40 (290)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEe
Confidence 88899999999999999999999999999764 344443
No 16
>PRK12338 hypothetical protein; Provisional
Probab=96.41 E-value=0.0054 Score=50.38 Aligned_cols=61 Identities=18% Similarity=0.233 Sum_probs=45.1
Q ss_pred CCCCeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHHHcCccHHHhcCCCCcH
Q psy4713 1 MTQPKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQNGLEMDKLLGATKYK 65 (103)
Q Consensus 1 ~~~pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~~~glDl~~LL~d~~YK 65 (103)
|+.| .||+++|-+||||--+|..|+.+++ +..+.-+|.+++......+-++.-.|..+.|-
T Consensus 1 m~~p-~ii~i~G~sGsGKST~a~~la~~l~---~~~~~~tD~~r~~~~~~~~~~~~P~l~~ssy~ 61 (319)
T PRK12338 1 MRKP-YVILIGSASGIGKSTIASELARTLN---IKHLIETDFIREVVRGIIGKEYAPALHKSSYN 61 (319)
T ss_pred CCCc-EEEEEECCCCCCHHHHHHHHHHHCC---CeEEccChHHHHHHcCCCCcccCchhhcccHH
Confidence 6655 7889999999999999999999986 44566688888865554444444556666553
No 17
>PRK04040 adenylate kinase; Provisional
Probab=96.40 E-value=0.019 Score=42.73 Aligned_cols=46 Identities=22% Similarity=0.388 Sum_probs=38.2
Q ss_pred EEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHHHcCc
Q psy4713 6 LILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQNGL 53 (103)
Q Consensus 6 lIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~~~gl 53 (103)
.+|+|+|-.||||-.++..|.+.+. ....++..++..++. |.+.|+
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~-~~~~~~~~g~~~~~~-a~~~g~ 48 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLK-EDYKIVNFGDVMLEV-AKEEGL 48 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhc-cCCeEEecchHHHHH-HHHcCC
Confidence 4789999999999999999999995 246678888877554 788887
No 18
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=96.29 E-value=0.0079 Score=42.62 Aligned_cols=52 Identities=19% Similarity=0.273 Sum_probs=39.2
Q ss_pred EEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHHH--cCccHHHhcCCC
Q psy4713 8 LLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQ--NGLEMDKLLGAT 62 (103)
Q Consensus 8 iL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~~--~glDl~~LL~d~ 62 (103)
|+|+|..||||..++..|++.++ +..+++++=++++.+.. .|..+...+..+
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~---~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~g 55 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYG---LPHISTGDLLREEIASGTELGKKAKEYIDSG 55 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC---CeEEECcHHHHHHHhcCChHHHHHHHHHHcC
Confidence 78999999999999999999974 77888888888776642 333344444433
No 19
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=96.18 E-value=0.038 Score=41.30 Aligned_cols=34 Identities=26% Similarity=0.538 Sum_probs=28.8
Q ss_pred CCCCeEEEEEecCcCCchhHHHHHHHHHhcccceEEEe
Q psy4713 1 MTQPKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIR 38 (103)
Q Consensus 1 ~~~pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~ 38 (103)
|...+++|.|||..||||-.+++.|.+ +| +.|+.
T Consensus 1 ~~~~~~~igitG~igsGKSt~~~~l~~-~g---~~v~d 34 (208)
T PRK14731 1 MRSLPFLVGVTGGIGSGKSTVCRFLAE-MG---CELFE 34 (208)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHH-CC---CeEEe
Confidence 778889999999999999999999987 43 55655
No 20
>PTZ00301 uridine kinase; Provisional
Probab=96.14 E-value=0.01 Score=45.28 Aligned_cols=37 Identities=22% Similarity=0.291 Sum_probs=29.1
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhc----ccceEEEecc
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIG----SQHCAIIRLS 40 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~----~~~~~iv~iS 40 (103)
|..||.|+|-+||||-.+|..|++.+. ...+.+++.-
T Consensus 2 ~~~iIgIaG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D 42 (210)
T PTZ00301 2 PCTVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICED 42 (210)
T ss_pred CCEEEEEECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCC
Confidence 678999999999999999999988773 2344455543
No 21
>PRK00300 gmk guanylate kinase; Provisional
Probab=96.12 E-value=0.0062 Score=44.00 Aligned_cols=30 Identities=37% Similarity=0.511 Sum_probs=27.9
Q ss_pred CCCCeEEEEEecCcCCchhHHHHHHHHHhc
Q psy4713 1 MTQPKLILLFSGKRKSGKDFLTDYLLERIG 30 (103)
Q Consensus 1 ~~~pklIiL~sGKrksGKDy~a~~l~~~l~ 30 (103)
|++|.-+|+|+|.+||||+-++..|...+.
T Consensus 1 ~~~~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 1 MMRRGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 888999999999999999999999998874
No 22
>PLN02200 adenylate kinase family protein
Probab=96.03 E-value=0.017 Score=44.47 Aligned_cols=43 Identities=19% Similarity=0.264 Sum_probs=35.9
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHH
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAK 49 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~ 49 (103)
+..||+|+|..||||.-++..|++.++ +..++.++-++++-+.
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~~~g---~~his~gdllR~~i~~ 84 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVETFG---FKHLSAGDLLRREIAS 84 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhC---CeEEEccHHHHHHHhc
Confidence 347899999999999999999999985 5568888888876543
No 23
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=95.98 E-value=0.076 Score=39.19 Aligned_cols=39 Identities=26% Similarity=0.366 Sum_probs=30.7
Q ss_pred EEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHH
Q psy4713 6 LILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWA 48 (103)
Q Consensus 6 lIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA 48 (103)
.+|.+||..||||..+++.|.+ +| +.++..-.-.++.|.
T Consensus 3 ~~i~ltG~~gsGKst~~~~l~~-~g---~~~i~~D~~~~~~~~ 41 (194)
T PRK00081 3 LIIGLTGGIGSGKSTVANLFAE-LG---APVIDADAIAHEVVE 41 (194)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-cC---CEEEEecHHHHHHhh
Confidence 5799999999999999999988 65 566666555555554
No 24
>PRK07667 uridine kinase; Provisional
Probab=95.84 E-value=0.016 Score=42.59 Aligned_cols=43 Identities=23% Similarity=0.299 Sum_probs=35.4
Q ss_pred CCCeEEEEEecCcCCchhHHHHHHHHHhcc--cceEEEecchhhH
Q psy4713 2 TQPKLILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRLSAPIK 44 (103)
Q Consensus 2 ~~pklIiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~iS~piK 44 (103)
...++||.|+|-+||||-.+|+.|++.++. ..+.++++.+=.+
T Consensus 14 ~~~~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~~~ 58 (193)
T PRK07667 14 KENRFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDYIV 58 (193)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcccc
Confidence 356799999999999999999999999975 3567788777444
No 25
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=95.84 E-value=0.04 Score=40.76 Aligned_cols=58 Identities=17% Similarity=0.397 Sum_probs=44.6
Q ss_pred CeEEEEEecCcCCch-hHHHHHHHHHhcc-cceEEEecchhhHH--HHHHHcCccHHHhcCC
Q psy4713 4 PKLILLFSGKRKSGK-DFLTDYLLERIGS-QHCAIIRLSAPIKS--HWAKQNGLEMDKLLGA 61 (103)
Q Consensus 4 pklIiL~sGKrksGK-Dy~a~~l~~~l~~-~~~~iv~iS~piK~--~yA~~~glDl~~LL~d 61 (103)
+.-+++|+|..|+|| -++...+.+.+.. ..|..+++..|..+ +++.+.|.|+++++..
T Consensus 15 ~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~~~~~l~~~~~~~~~~~~~~~~~ 76 (224)
T TIGR03880 15 EGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEEREERILGYAKSKGWDLEDYIDK 76 (224)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHcCCChHHHHhC
Confidence 456889999999999 4555555555544 67888999999877 6777899999887544
No 26
>PRK04328 hypothetical protein; Provisional
Probab=95.82 E-value=0.039 Score=42.41 Aligned_cols=59 Identities=17% Similarity=0.243 Sum_probs=44.0
Q ss_pred CeEEEEEecCcCCchhH-HHHHHHHHhcc-cceEEEecchhhHH--HHHHHcCccHHHhcCCC
Q psy4713 4 PKLILLFSGKRKSGKDF-LTDYLLERIGS-QHCAIIRLSAPIKS--HWAKQNGLEMDKLLGAT 62 (103)
Q Consensus 4 pklIiL~sGKrksGKDy-~a~~l~~~l~~-~~~~iv~iS~piK~--~yA~~~glDl~~LL~d~ 62 (103)
+.-++||+|..||||-- +...+...+.. ..|..+++.++..+ +.|.+.|.|+++++.++
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ee~~~~i~~~~~~~g~d~~~~~~~~ 84 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALEEHPVQVRRNMRQFGWDVRKYEEEG 84 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEeeCCHHHHHHHHHHcCCCHHHHhhcC
Confidence 46789999999999955 44455555544 68888998777765 45678999999886543
No 27
>PRK04182 cytidylate kinase; Provisional
Probab=95.77 E-value=0.031 Score=38.89 Aligned_cols=48 Identities=27% Similarity=0.465 Sum_probs=36.5
Q ss_pred EEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHHHcCccHHHh
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQNGLEMDKL 58 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~~~glDl~~L 58 (103)
||+|+|-.||||--++..|+++++ ..++.. +-+=++.++..|.++.++
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg---~~~id~-~~~~~~~~~~~g~~~~~~ 49 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLG---LKHVSA-GEIFRELAKERGMSLEEF 49 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC---CcEecH-HHHHHHHHHHcCCCHHHH
Confidence 799999999999999999999986 334443 333445667788887665
No 28
>PRK06762 hypothetical protein; Provisional
Probab=95.72 E-value=0.03 Score=39.29 Aligned_cols=39 Identities=21% Similarity=0.451 Sum_probs=29.2
Q ss_pred EEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHH
Q psy4713 6 LILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSH 46 (103)
Q Consensus 6 lIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~ 46 (103)
.+|+|+|..||||-.+|..|.+.++. .+.+++ ++.+++.
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l~~-~~~~i~-~D~~r~~ 41 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERLGR-GTLLVS-QDVVRRD 41 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC-CeEEec-HHHHHHH
Confidence 36677999999999999999999963 455554 3555543
No 29
>PRK08233 hypothetical protein; Provisional
Probab=95.70 E-value=0.022 Score=39.88 Aligned_cols=27 Identities=22% Similarity=0.334 Sum_probs=24.8
Q ss_pred eEEEEEecCcCCchhHHHHHHHHHhcc
Q psy4713 5 KLILLFSGKRKSGKDFLTDYLLERIGS 31 (103)
Q Consensus 5 klIiL~sGKrksGKDy~a~~l~~~l~~ 31 (103)
..||.|+|-+||||-.+|+.|+..|+.
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~~ 29 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLKN 29 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCCC
Confidence 589999999999999999999999963
No 30
>PF03976 PPK2: Polyphosphate kinase 2 (PPK2); InterPro: IPR022488 This presumed domain is found in one or two copies per protein. The domain is about 230 amino acids in length and has many conserved motifs, it has polyphosphate kinase activity [, ].; PDB: 3CZP_A 3RHF_D 3CZQ_B.
Probab=95.69 E-value=0.014 Score=45.59 Aligned_cols=45 Identities=20% Similarity=0.360 Sum_probs=37.5
Q ss_pred eEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHH
Q psy4713 5 KLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAK 49 (103)
Q Consensus 5 klIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~ 49 (103)
++||||.|=-+||||-+.+.|.+.+....++|.++..|+-++-+.
T Consensus 31 ~vlIl~eG~d~sGKg~~I~~l~~~lDPR~~~v~~~~~pt~eE~~~ 75 (228)
T PF03976_consen 31 PVLILFEGWDASGKGGTINRLIEWLDPRGFRVHAFGKPTDEELRR 75 (228)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHCCS-GGGEEEEE-SS--HHHHTS
T ss_pred cEEEEEeccccCCchHHHHHHHHhCCCCeeEEEeCCCCChhHcCC
Confidence 499999999999999999999999999899999999998887653
No 31
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=95.69 E-value=0.02 Score=37.44 Aligned_cols=32 Identities=25% Similarity=0.470 Sum_probs=26.7
Q ss_pred EEEecCcCCchhHHHHHHHHHhcccceEEEecchh
Q psy4713 8 LLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAP 42 (103)
Q Consensus 8 iL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~p 42 (103)
||++|.+|+||=+++..+.+.++ ..++.++.+
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~---~~~~~i~~~ 32 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG---FPFIEIDGS 32 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT---SEEEEEETT
T ss_pred CEEECcCCCCeeHHHHHHHhhcc---ccccccccc
Confidence 78999999999999999999985 455555544
No 32
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=95.65 E-value=0.0081 Score=44.28 Aligned_cols=81 Identities=20% Similarity=0.192 Sum_probs=52.5
Q ss_pred CCeEEEEEecCcCCchhHHHHHHHHHhc-ccceEEEecchhhHHHHHHHcCccHHHhcCCCCcHHHhHHHHHHHHHHHhc
Q psy4713 3 QPKLILLFSGKRKSGKDFLTDYLLERIG-SQHCAIIRLSAPIKSHWAKQNGLEMDKLLGATKYKEKYRAEMITWSEAERR 81 (103)
Q Consensus 3 ~pklIiL~sGKrksGKDy~a~~l~~~l~-~~~~~iv~iS~piK~~yA~~~glDl~~LL~d~~YKE~~R~~mi~wge~~R~ 81 (103)
+|+..+||.|.+|+||=+++..|.+.+. ......+++--+.=.+ ...-.--+.+|+...+.--.++..=+-+.+|.=+
T Consensus 1 ~p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~-~~~~~~~~~~l~~~~~~~v~~~~~gVVllDEidK 79 (171)
T PF07724_consen 1 RPKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSE-GDDVESSVSKLLGSPPGYVGAEEGGVVLLDEIDK 79 (171)
T ss_dssp S-SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCS-HHHCSCHCHHHHHHTTCHHHHHHHTEEEEETGGG
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccc-cchHHhhhhhhhhcccceeeccchhhhhhHHHhh
Confidence 5899999999999999999999999998 5444554443332221 2222223456666555555555555666666666
Q ss_pred cCh
Q psy4713 82 KDN 84 (103)
Q Consensus 82 ~D~ 84 (103)
.+|
T Consensus 80 a~~ 82 (171)
T PF07724_consen 80 AHP 82 (171)
T ss_dssp CSH
T ss_pred ccc
Confidence 666
No 33
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=95.50 E-value=0.02 Score=41.95 Aligned_cols=38 Identities=18% Similarity=0.199 Sum_probs=31.3
Q ss_pred EEEEecCcCCchhHHHHHHHHHhcc--cceEEEecchhhH
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRLSAPIK 44 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~iS~piK 44 (103)
||.|+|.+||||-.+|+.|+..+.. .++.++++-+=.|
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~~ 40 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYV 40 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhccc
Confidence 6899999999999999999999964 4677777665444
No 34
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=95.49 E-value=0.0074 Score=41.83 Aligned_cols=26 Identities=27% Similarity=0.394 Sum_probs=22.1
Q ss_pred EEEEEecCcCCchhHHHHHHHHHhcc
Q psy4713 6 LILLFSGKRKSGKDFLTDYLLERIGS 31 (103)
Q Consensus 6 lIiL~sGKrksGKDy~a~~l~~~l~~ 31 (103)
.-|||+|++|+||.++|..|+..-..
T Consensus 22 ~pvli~GE~GtGK~~~A~~lh~~~~~ 47 (138)
T PF14532_consen 22 SPVLITGEPGTGKSLLARALHRYSGR 47 (138)
T ss_dssp S-EEEECCTTSSHHHHHHCCHHTTTT
T ss_pred CcEEEEcCCCCCHHHHHHHHHhhcCc
Confidence 34789999999999999999998654
No 35
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=95.45 E-value=0.11 Score=38.70 Aligned_cols=60 Identities=18% Similarity=0.226 Sum_probs=41.1
Q ss_pred EEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHHHcCccHHHhcCCCCcHHHhHHHHHHHHHHHhccC
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQNGLEMDKLLGATKYKEKYRAEMITWSEAERRKD 83 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~~~glDl~~LL~d~~YKE~~R~~mi~wge~~R~~D 83 (103)
+|.+||..||||-.+++.+.+.+| +.+++--+-.++.|.+ + .+.|+...-.||++....|
T Consensus 3 ~i~itG~~gsGKst~~~~l~~~~g---~~~i~~D~~~~~~~~~------------~--~~~~~~l~~~fg~~i~~~~ 62 (195)
T PRK14730 3 RIGLTGGIASGKSTVGNYLAQQKG---IPILDADIYAREALAP------------G--SPILKAILQRYGNKIIDPD 62 (195)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhC---CeEeeCcHHHHHHHhc------------C--chHHHHHHHHhCHHhcCCC
Confidence 799999999999999999998875 6666655545555543 1 2344455556666665443
No 36
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=95.39 E-value=0.06 Score=41.23 Aligned_cols=41 Identities=24% Similarity=0.320 Sum_probs=35.4
Q ss_pred eEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHH
Q psy4713 5 KLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAK 49 (103)
Q Consensus 5 klIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~ 49 (103)
.+||-+||.-+|||.-+++.+.+ +| +.|+.-....++.|.+
T Consensus 2 ~~iIglTG~igsGKStva~~~~~-~G---~~vidaD~v~r~~~~~ 42 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAE-LG---FPVIDADDVAREVVEP 42 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHH-cC---CeEEEccHHHHHHHhc
Confidence 47899999999999999999999 54 7788888888877764
No 37
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=95.38 E-value=0.076 Score=38.12 Aligned_cols=44 Identities=16% Similarity=0.313 Sum_probs=32.1
Q ss_pred CCCCeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecc-hhhH
Q psy4713 1 MTQPKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLS-APIK 44 (103)
Q Consensus 1 ~~~pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS-~piK 44 (103)
|.++..+|+++|.+||||--++..|...+......++.++ +++.
T Consensus 14 ~~~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~r 58 (184)
T TIGR00455 14 NGHRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNVR 58 (184)
T ss_pred hCCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChHHH
Confidence 4467789999999999999999999999854333334443 3444
No 38
>PRK14527 adenylate kinase; Provisional
Probab=95.37 E-value=0.022 Score=41.37 Aligned_cols=44 Identities=18% Similarity=0.357 Sum_probs=34.0
Q ss_pred CCeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHH
Q psy4713 3 QPKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAK 49 (103)
Q Consensus 3 ~pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~ 49 (103)
.+.-||+|.|..||||.-.+..|.+.++ +..++..+-+.++.+.
T Consensus 4 ~~~~~i~i~G~pGsGKsT~a~~La~~~~---~~~is~gd~~r~~~~~ 47 (191)
T PRK14527 4 TKNKVVIFLGPPGAGKGTQAERLAQELG---LKKLSTGDILRDHVAR 47 (191)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhC---CCCCCccHHHHHHHhc
Confidence 3445788999999999999999999875 5556667777666543
No 39
>TIGR03707 PPK2_P_aer polyphosphate kinase 2, PA0141 family. Members of this protein family are designated polyphosphate kinase 2 (PPK2) after the characterized protein in Pseudomonas aeruginosa. This family comprises one of three well-separated clades in the larger family described by Pfam model pfam03976. PA0141 from this family has been shown capable of operating in reverse, with GDP preferred (over ADP) as a substrate, producing GTP (or ATP) by transfer of a phosphate residue from polyphosphate. Most species with a member of this family also encode a polyphosphate kinase 1 (PPK1).
Probab=95.34 E-value=0.028 Score=44.15 Aligned_cols=45 Identities=16% Similarity=0.411 Sum_probs=41.7
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHH
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWA 48 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA 48 (103)
-.+||||.|=-+||||-+.+.+.+.+...-+.|.++..|+.+|-+
T Consensus 30 ~~vlIv~eG~DaAGKg~~I~~l~~~lDPRg~~v~~~~~pt~eE~~ 74 (230)
T TIGR03707 30 ARVVIVFEGRDAAGKGGTIKRITEHLNPRGARVVALPKPSDRERT 74 (230)
T ss_pred CCEEEEEeCCCCCCchHHHHHHHHhcCCCeeEEEeCCCCCHHHHc
Confidence 479999999999999999999999999999999999999988754
No 40
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=95.32 E-value=0.034 Score=35.52 Aligned_cols=37 Identities=22% Similarity=0.288 Sum_probs=27.8
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecc
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLS 40 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS 40 (103)
+...++|+|.+|+||-.++..+...+......++.++
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~ 54 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLN 54 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEe
Confidence 3457889999999999999999999854333344333
No 41
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.31 E-value=0.035 Score=43.70 Aligned_cols=38 Identities=26% Similarity=0.441 Sum_probs=32.2
Q ss_pred CCCCe---EEEEEecCcCCchhHHHHHHHHHhcccceEEEe
Q psy4713 1 MTQPK---LILLFSGKRKSGKDFLTDYLLERIGSQHCAIIR 38 (103)
Q Consensus 1 ~~~pk---lIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~ 38 (103)
|+.+. +||.|+|-+||||==+|..|.+.|+...+.+++
T Consensus 1 m~~~~~~~iiIgIaG~SgSGKTTva~~l~~~~~~~~~~~I~ 41 (218)
T COG0572 1 MMKKPEKVIIIGIAGGSGSGKTTVAKELSEQLGVEKVVVIS 41 (218)
T ss_pred CCCCCCceEEEEEeCCCCCCHHHHHHHHHHHhCcCcceEee
Confidence 45554 999999999999999999999999966666665
No 42
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=95.29 E-value=0.054 Score=39.98 Aligned_cols=57 Identities=19% Similarity=0.303 Sum_probs=40.5
Q ss_pred eEEEEEecCcCCchhHHHHHHH-HHhc--ccceEEEecchhhHH--HHHHHcCccHHHhcCC
Q psy4713 5 KLILLFSGKRKSGKDFLTDYLL-ERIG--SQHCAIIRLSAPIKS--HWAKQNGLEMDKLLGA 61 (103)
Q Consensus 5 klIiL~sGKrksGKDy~a~~l~-~~l~--~~~~~iv~iS~piK~--~yA~~~glDl~~LL~d 61 (103)
.-++|++|.+||||--++..+. +.+. ..+|..|++.+|-.+ +.+...|.|++++...
T Consensus 19 gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~g~d~~~~~~~ 80 (226)
T PF06745_consen 19 GSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSFGWDLEEYEDS 80 (226)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTTTS-HHHHHHT
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHcCCcHHHHhhc
Confidence 3579999999999998877654 4433 378999999999874 4555789999987654
No 43
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=95.26 E-value=0.022 Score=41.85 Aligned_cols=35 Identities=17% Similarity=0.314 Sum_probs=25.4
Q ss_pred EEEEEecCcCCchhHHHHHHHHHhccc--ceEEEecc
Q psy4713 6 LILLFSGKRKSGKDFLTDYLLERIGSQ--HCAIIRLS 40 (103)
Q Consensus 6 lIiL~sGKrksGKDy~a~~l~~~l~~~--~~~iv~iS 40 (103)
.=|||+|++|+||..+|..+++..... ....|..+
T Consensus 23 ~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~ 59 (168)
T PF00158_consen 23 LPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCA 59 (168)
T ss_dssp S-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETT
T ss_pred CCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehh
Confidence 447899999999999999999976542 33344444
No 44
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=95.23 E-value=0.037 Score=39.23 Aligned_cols=42 Identities=17% Similarity=0.267 Sum_probs=30.3
Q ss_pred EEEEecCcCCchhHHHHHHHHHhcccceEEEec-chhhHHHHH
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRL-SAPIKSHWA 48 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~i-S~piK~~yA 48 (103)
||+|+|.+||||-.++..|...+......++.| ++++++...
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~r~~l~ 43 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVRHGLN 43 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHHHHhhh
Confidence 589999999999999999999985433233333 466665443
No 45
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=95.20 E-value=0.031 Score=40.59 Aligned_cols=28 Identities=21% Similarity=0.192 Sum_probs=24.3
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhcc
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIGS 31 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~~ 31 (103)
..-.|+|+|++|+||-+++..+...+..
T Consensus 37 ~~~~lll~G~~G~GKT~la~~~~~~~~~ 64 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQAACAAAEE 64 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3457899999999999999999988764
No 46
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=95.17 E-value=0.034 Score=41.05 Aligned_cols=53 Identities=17% Similarity=0.233 Sum_probs=40.4
Q ss_pred EEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHHH--cCccHHHhcCCCC
Q psy4713 8 LLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQ--NGLEMDKLLGATK 63 (103)
Q Consensus 8 iL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~~--~glDl~~LL~d~~ 63 (103)
|+|.|..||||.-+|..|++.++ +..++.++-++++.... .|..+.+++..+.
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g---~~~is~gdllr~~~~~~~~~~~~~~~~~~~g~ 56 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYG---LPHISTGDLLRAEIKAGTPLGKKAKEYMEKGE 56 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC---CCeeehhHHHHHhhccccHHHHHHHHHHhCCC
Confidence 67899999999999999999874 78888888888776542 3444555555544
No 47
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=95.16 E-value=0.067 Score=40.40 Aligned_cols=47 Identities=15% Similarity=0.169 Sum_probs=38.4
Q ss_pred eEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHHHcCcc
Q psy4713 5 KLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQNGLE 54 (103)
Q Consensus 5 klIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~~~glD 54 (103)
..+|+|+|-+||||--++..|+++++ ..++..+|.+++.-....+.+
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~~---~~~~~~~D~~r~~~r~~~~~~ 49 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHRA---IDIVLSGDYLREFLRPYVDDE 49 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC---CeEEehhHHHHHHHHHhcCCC
Confidence 45889999999999999999999975 566788888877777655543
No 48
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=95.14 E-value=0.042 Score=39.64 Aligned_cols=25 Identities=24% Similarity=0.402 Sum_probs=21.7
Q ss_pred EEEEecCcCCchhHHHHHHHHHhcc
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIGS 31 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~~ 31 (103)
+|+++|.+||||+=+++.|.+.+..
T Consensus 4 ~ivl~Gpsg~GK~~l~~~L~~~~~~ 28 (183)
T PF00625_consen 4 PIVLVGPSGSGKSTLAKRLIQEFPD 28 (183)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHSTT
T ss_pred EEEEECCCCCCHHHHHHHHHHhccc
Confidence 4556999999999999999998865
No 49
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=95.13 E-value=0.048 Score=41.25 Aligned_cols=25 Identities=16% Similarity=0.440 Sum_probs=23.1
Q ss_pred EEEEecCcCCchhHHHHHHHHHhcc
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIGS 31 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~~ 31 (103)
+|+|+|-.||||-.+|..|++.+..
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~ 25 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSE 25 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 5899999999999999999999965
No 50
>PRK07429 phosphoribulokinase; Provisional
Probab=95.09 E-value=0.045 Score=44.55 Aligned_cols=41 Identities=20% Similarity=0.296 Sum_probs=35.1
Q ss_pred CCCCeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecch
Q psy4713 1 MTQPKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSA 41 (103)
Q Consensus 1 ~~~pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~ 41 (103)
|...++||-|+|.+||||--+++.|...|+...+.++.+-+
T Consensus 4 ~~~~~~IIgI~G~SGSGKSTla~~L~~ll~~~~~~vi~~Dd 44 (327)
T PRK07429 4 MPDRPVLLGVAGDSGCGKTTFLRGLADLLGEELVTVICTDD 44 (327)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHhHhccCceEEEEecc
Confidence 45677999999999999999999999999877777777643
No 51
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.06 E-value=0.028 Score=36.64 Aligned_cols=22 Identities=36% Similarity=0.440 Sum_probs=21.2
Q ss_pred EEEecCcCCchhHHHHHHHHHh
Q psy4713 8 LLFSGKRKSGKDFLTDYLLERI 29 (103)
Q Consensus 8 iL~sGKrksGKDy~a~~l~~~l 29 (103)
|+|+|..||||--++..|++++
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999998
No 52
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=95.04 E-value=0.09 Score=34.72 Aligned_cols=78 Identities=21% Similarity=0.230 Sum_probs=43.9
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhccc-----ceEEEecchhhHHHHHHHcCccHHHhcCCC---CcHHHhHHHHHHH
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIGSQ-----HCAIIRLSAPIKSHWAKQNGLEMDKLLGAT---KYKEKYRAEMITW 75 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~~~-----~~~iv~iS~piK~~yA~~~glDl~~LL~d~---~YKE~~R~~mi~w 75 (103)
.+-+++|+|++||||=.+++.+...+... ...++.+.-|-......-...-++.+-... ..-+..+..++++
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~ 82 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDA 82 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHH
Confidence 35678999999999999999999988642 566667666655422221111222222222 2345555677776
Q ss_pred HHHHhc
Q psy4713 76 SEAERR 81 (103)
Q Consensus 76 ge~~R~ 81 (103)
.+..+.
T Consensus 83 l~~~~~ 88 (131)
T PF13401_consen 83 LDRRRV 88 (131)
T ss_dssp HHHCTE
T ss_pred HHhcCC
Confidence 666554
No 53
>PRK14530 adenylate kinase; Provisional
Probab=95.04 E-value=0.061 Score=39.83 Aligned_cols=41 Identities=24% Similarity=0.485 Sum_probs=33.0
Q ss_pred CCCCeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHH
Q psy4713 1 MTQPKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSH 46 (103)
Q Consensus 1 ~~~pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~ 46 (103)
|+.|+ |+|.|-+||||.-++..|++.++ +..++..+-++++
T Consensus 1 ~~~~~--I~i~G~pGsGKsT~~~~La~~~~---~~~i~~g~~lr~~ 41 (215)
T PRK14530 1 MSQPR--ILLLGAPGAGKGTQSSNLAEEFG---VEHVTTGDALRAN 41 (215)
T ss_pred CCCCE--EEEECCCCCCHHHHHHHHHHHhC---CeEEeccHHHHHh
Confidence 67775 66789999999999999999985 5566777776654
No 54
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.04 E-value=0.099 Score=38.99 Aligned_cols=58 Identities=14% Similarity=0.221 Sum_probs=43.7
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHH-hcc-cceEEEecchhhHHHH--HHHcCccHHHhcCC
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLER-IGS-QHCAIIRLSAPIKSHW--AKQNGLEMDKLLGA 61 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~-l~~-~~~~iv~iS~piK~~y--A~~~glDl~~LL~d 61 (103)
+.-+++|+|..||||-.++..+.-. +.. ..|..++++++..+.. +...|.|+++.+.+
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~~~~~~~~~~~g~~~~~~~~~ 85 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTSKSYLKQMESVKIDISDFFLW 85 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHHHHHCCCChhHHHhC
Confidence 4568899999999999999887443 333 6888999988876533 34789999887543
No 55
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=95.03 E-value=0.033 Score=40.76 Aligned_cols=28 Identities=29% Similarity=0.548 Sum_probs=25.3
Q ss_pred CCeEEEEEecCcCCchhHHHHHHHHHhc
Q psy4713 3 QPKLILLFSGKRKSGKDFLTDYLLERIG 30 (103)
Q Consensus 3 ~pklIiL~sGKrksGKDy~a~~l~~~l~ 30 (103)
+..||+-|.|-+|.||.|++.+|++.+=
T Consensus 51 ~KpLVlSfHG~tGtGKn~v~~liA~~ly 78 (127)
T PF06309_consen 51 RKPLVLSFHGWTGTGKNFVSRLIAEHLY 78 (127)
T ss_pred CCCEEEEeecCCCCcHHHHHHHHHHHHH
Confidence 4569999999999999999999999963
No 56
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=95.01 E-value=0.046 Score=37.19 Aligned_cols=45 Identities=18% Similarity=0.423 Sum_probs=31.5
Q ss_pred EEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHHHcCccHHHhc
Q psy4713 8 LLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQNGLEMDKLL 59 (103)
Q Consensus 8 iL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~~~glDl~~LL 59 (103)
|+++|-+||||..++..|++.++ ...++...-+++. +|.++.++.
T Consensus 2 i~l~G~~GsGKstla~~la~~l~---~~~~~~d~~~~~~----~~~~~~~~~ 46 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALG---LPFVDLDELIEQR----AGMSIPEIF 46 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhC---CCEEEchHHHHHH----cCCCHHHHH
Confidence 78999999999999999999985 4455555444333 344554443
No 57
>PRK03846 adenylylsulfate kinase; Provisional
Probab=95.00 E-value=0.05 Score=39.91 Aligned_cols=44 Identities=20% Similarity=0.289 Sum_probs=30.6
Q ss_pred CCeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecc-hhhHHH
Q psy4713 3 QPKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLS-APIKSH 46 (103)
Q Consensus 3 ~pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS-~piK~~ 46 (103)
.+..+|.|+|.+||||--++..|...+......++.|. +++...
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~~~ 66 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVRHG 66 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHHhh
Confidence 34568889999999999999999998854322233342 444433
No 58
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=94.98 E-value=0.027 Score=37.86 Aligned_cols=32 Identities=22% Similarity=0.427 Sum_probs=26.1
Q ss_pred EEEEecCcCCchhHHHHHHHHHhcccceEEEecch
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSA 41 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~ 41 (103)
||.|+|..||||.-++..|...++ ...+..++
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~---~~~~~~~~ 32 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLG---LPYLDTGG 32 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC---Cceecccc
Confidence 689999999999999999999986 33444443
No 59
>PRK14531 adenylate kinase; Provisional
Probab=94.93 E-value=0.057 Score=39.14 Aligned_cols=40 Identities=25% Similarity=0.242 Sum_probs=34.1
Q ss_pred EEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHH
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAK 49 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~ 49 (103)
.|+|.|.+||||.-++..|++.++ +..++.++-++.+-+.
T Consensus 4 ~i~i~G~pGsGKsT~~~~la~~~g---~~~is~gd~lr~~~~~ 43 (183)
T PRK14531 4 RLLFLGPPGAGKGTQAARLCAAHG---LRHLSTGDLLRSEVAA 43 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC---CCeEecccHHHHHHhc
Confidence 478899999999999999999985 6678888888877654
No 60
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.86 E-value=0.055 Score=36.78 Aligned_cols=34 Identities=26% Similarity=0.336 Sum_probs=27.5
Q ss_pred EEEecCcCCchhHHHHHHHHHhcccceEEEecchh
Q psy4713 8 LLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAP 42 (103)
Q Consensus 8 iL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~p 42 (103)
|++.|.+|+||-.++..+...++ ..+..+.++.-
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~-~~~~~i~~~~~ 35 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLG-RPVIRINCSSD 35 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHT-CEEEEEE-TTT
T ss_pred EEEECCCCCCHHHHHHHHHHHhh-cceEEEEeccc
Confidence 68999999999999999999995 55666666653
No 61
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=94.84 E-value=0.092 Score=38.02 Aligned_cols=38 Identities=24% Similarity=0.356 Sum_probs=30.0
Q ss_pred EEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHH
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWA 48 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA 48 (103)
||.+||..||||-.++..+.+ +| +.+++...-.++.|.
T Consensus 1 ii~itG~~gsGKst~~~~l~~-~g---~~~i~~D~~~~~~~~ 38 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE-LG---IPVIDADKIAHEVYE 38 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH-CC---CCEEecCHHHHhhhh
Confidence 689999999999999999998 54 666766655555554
No 62
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=94.84 E-value=0.062 Score=39.58 Aligned_cols=39 Identities=23% Similarity=0.346 Sum_probs=31.8
Q ss_pred CCeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecch
Q psy4713 3 QPKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSA 41 (103)
Q Consensus 3 ~pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~ 41 (103)
++-.||.|+|.+||||--+++.|...+....+.+++.-+
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~~~~~~i~~D~ 42 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLGKLEIVIISQDN 42 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhcccCCeEecccc
Confidence 456788999999999999999999988754566666544
No 63
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=94.77 E-value=0.041 Score=40.11 Aligned_cols=38 Identities=24% Similarity=0.270 Sum_probs=30.0
Q ss_pred EEEEecCcCCchhHHHHHHHHHhcccc------eEEEecchhhH
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIGSQH------CAIIRLSAPIK 44 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~~~~------~~iv~iS~piK 44 (103)
||-|+|-++|||-.+|+.|...|++.. +.++++-+..+
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~~~~~~~~~~~~~~d~~~~ 44 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKRGIPAMEMDIILSLDDFYD 44 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTCTTTCCCSEEEEEGGGGBH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCccCcCccceeEEEeeccccc
Confidence 789999999999999999999998632 44556554443
No 64
>PRK05541 adenylylsulfate kinase; Provisional
Probab=94.74 E-value=0.077 Score=37.73 Aligned_cols=31 Identities=26% Similarity=0.389 Sum_probs=27.6
Q ss_pred CCCCeEEEEEecCcCCchhHHHHHHHHHhcc
Q psy4713 1 MTQPKLILLFSGKRKSGKDFLTDYLLERIGS 31 (103)
Q Consensus 1 ~~~pklIiL~sGKrksGKDy~a~~l~~~l~~ 31 (103)
|.++..+|+|+|-+||||--++..|...|..
T Consensus 3 ~~~~~~~I~i~G~~GsGKst~a~~l~~~l~~ 33 (176)
T PRK05541 3 MKPNGYVIWITGLAGSGKTTIAKALYERLKL 33 (176)
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 5667789999999999999999999999864
No 65
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=94.73 E-value=0.029 Score=38.60 Aligned_cols=24 Identities=38% Similarity=0.566 Sum_probs=22.3
Q ss_pred EEEEecCcCCchhHHHHHHHHHhc
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIG 30 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~ 30 (103)
||+|+|-+||||-.++..|..+++
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~~ 24 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERLG 24 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhcC
Confidence 689999999999999999999975
No 66
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=94.70 E-value=0.12 Score=41.00 Aligned_cols=66 Identities=21% Similarity=0.332 Sum_probs=45.2
Q ss_pred CCCeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHHHcCccHHHhcCCCCcHHHhHHHHHHH
Q psy4713 2 TQPKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQNGLEMDKLLGATKYKEKYRAEMITW 75 (103)
Q Consensus 2 ~~pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~~~glDl~~LL~d~~YKE~~R~~mi~w 75 (103)
.+|.-.|+++|-+||||.-++..|.+.+| +.++.+- ++.++..|.++.++...- -.+.||..-.++
T Consensus 130 ~~~~~~I~l~G~~GsGKStvg~~La~~Lg---~~~id~D----~~i~~~~G~~i~ei~~~~-G~~~fr~~e~~~ 195 (309)
T PRK08154 130 AARRRRIALIGLRGAGKSTLGRMLAARLG---VPFVELN----REIEREAGLSVSEIFALY-GQEGYRRLERRA 195 (309)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHcC---CCEEeHH----HHHHHHhCCCHHHHHHHH-CHHHHHHHHHHH
Confidence 36778899999999999999999999986 4444443 455566788887764321 134455443333
No 67
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=94.67 E-value=0.057 Score=39.10 Aligned_cols=35 Identities=26% Similarity=0.479 Sum_probs=30.6
Q ss_pred EEEEecCcCCchhHHHHHHHHHhcccceEEEecch
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSA 41 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~ 41 (103)
||.|+|.+||||-.+++.|...++...+.+++.-+
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~~~~~~v~~~D~ 35 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDS 35 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCCCeEEEEecc
Confidence 68999999999999999999998656778887765
No 68
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=94.66 E-value=0.12 Score=36.44 Aligned_cols=33 Identities=21% Similarity=0.333 Sum_probs=25.4
Q ss_pred EEEecCcCCchhHHHHHHHHHhcccceEEEecchhh
Q psy4713 8 LLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPI 43 (103)
Q Consensus 8 iL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~pi 43 (103)
|+|+|-+||||..++..|+++++ ...++.-..+
T Consensus 5 i~~~G~~GsGKst~~~~la~~lg---~~~~d~D~~~ 37 (171)
T PRK03731 5 LFLVGARGCGKTTVGMALAQALG---YRFVDTDQWL 37 (171)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC---CCEEEccHHH
Confidence 55689999999999999999986 3445544433
No 69
>TIGR03709 PPK2_rel_1 polyphosphate:nucleotide phosphotransferase, PPK2 family. Members of this protein family belong to the polyphosphate kinase 2 (PPK2) family, which is not related in sequence to PPK1. While PPK1 tends to act in the biosynthesis of polyphosphate, or poly(P), members of the PPK2 family tend to use the terminal phosphate of poly(P) to regenerate ATP or GTP from the corresponding nucleoside diphosphate, or ADP from AMP as is the case with polyphosphate:AMP phosphotransferase (PAP). Members of this protein family most likely transfer the terminal phosphate between poly(P) and some nucleotide, but it is not clear which.
Probab=94.60 E-value=0.061 Score=43.18 Aligned_cols=44 Identities=20% Similarity=0.386 Sum_probs=40.7
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHH
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHW 47 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~y 47 (103)
-.+||||.|=-+||||-+.+.|.+.+....++|.++..|+-+|=
T Consensus 55 ~~vlIv~eG~DaAGKG~~I~~l~~~lDPRg~~V~s~~~Pt~eE~ 98 (264)
T TIGR03709 55 RSLLLVLQAMDAAGKDGTIRHVMSGVNPQGCQVTSFKAPSAEEL 98 (264)
T ss_pred CcEEEEEECCCCCCchHHHHHHHHhcCCCeeEEEeCCCCCHHHH
Confidence 47999999999999999999999999999999999999998753
No 70
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=94.45 E-value=0.056 Score=39.21 Aligned_cols=25 Identities=28% Similarity=0.353 Sum_probs=22.3
Q ss_pred EEEEEecCcCCchhHHHHHHHHHhc
Q psy4713 6 LILLFSGKRKSGKDFLTDYLLERIG 30 (103)
Q Consensus 6 lIiL~sGKrksGKDy~a~~l~~~l~ 30 (103)
.+|+++|.+||||+.+++.|.+.+.
T Consensus 3 r~ivl~Gpsg~GK~tl~~~L~~~~~ 27 (184)
T smart00072 3 RPIVLSGPSGVGKGTLLAELIQEIP 27 (184)
T ss_pred cEEEEECCCCCCHHHHHHHHHhcCC
Confidence 4688999999999999999998863
No 71
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=94.43 E-value=0.18 Score=37.18 Aligned_cols=57 Identities=14% Similarity=0.242 Sum_probs=40.3
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHH-hcc-cceEEEecchhhHH--HHHHHcCccHHHhcC
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLER-IGS-QHCAIIRLSAPIKS--HWAKQNGLEMDKLLG 60 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~-l~~-~~~~iv~iS~piK~--~yA~~~glDl~~LL~ 60 (103)
+--+++|.|.+||||-.++..+... +.+ ..+..++.-.+..+ +.|+..|.|+++++.
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e~~~~~i~~~~~~~g~~~~~~~~ 79 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTTEESRESIIRQAAQFGMDFEKAIE 79 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEccCCHHHHHHHHHHhCCCHHHHhh
Confidence 4458899999999999888765533 222 46667776555543 247789999998754
No 72
>PRK06547 hypothetical protein; Provisional
Probab=94.33 E-value=0.063 Score=39.62 Aligned_cols=35 Identities=29% Similarity=0.470 Sum_probs=28.5
Q ss_pred CCeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecc
Q psy4713 3 QPKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLS 40 (103)
Q Consensus 3 ~pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS 40 (103)
.+..+|+|+|.+||||=.+++.|++.++ +.++++-
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~~---~~~~~~d 47 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAARTG---FQLVHLD 47 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhC---CCeeccc
Confidence 5678999999999999999999999875 4444443
No 73
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=94.32 E-value=0.091 Score=39.46 Aligned_cols=39 Identities=23% Similarity=0.357 Sum_probs=31.3
Q ss_pred CCeEEEEEecCcCCchhHHHHHHHHHhccc--ceEE-Eecch
Q psy4713 3 QPKLILLFSGKRKSGKDFLTDYLLERIGSQ--HCAI-IRLSA 41 (103)
Q Consensus 3 ~pklIiL~sGKrksGKDy~a~~l~~~l~~~--~~~i-v~iS~ 41 (103)
.+..||.|+|.+||||--+++.|...+... .+.| +++-+
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~ 72 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDG 72 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEeccc
Confidence 467899999999999999999999999763 3344 65544
No 74
>PRK13947 shikimate kinase; Provisional
Probab=94.31 E-value=0.082 Score=37.01 Aligned_cols=24 Identities=13% Similarity=0.203 Sum_probs=22.3
Q ss_pred EEEecCcCCchhHHHHHHHHHhcc
Q psy4713 8 LLFSGKRKSGKDFLTDYLLERIGS 31 (103)
Q Consensus 8 iL~sGKrksGKDy~a~~l~~~l~~ 31 (103)
|+++|-+||||-.++..|+++|+-
T Consensus 4 I~l~G~~GsGKst~a~~La~~lg~ 27 (171)
T PRK13947 4 IVLIGFMGTGKTTVGKRVATTLSF 27 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCC
Confidence 788999999999999999999963
No 75
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=94.22 E-value=0.06 Score=37.25 Aligned_cols=29 Identities=34% Similarity=0.491 Sum_probs=21.0
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhccc
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIGSQ 32 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~~~ 32 (103)
..-+++|+|.+|+||=.+...+..++...
T Consensus 23 ~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 23 SPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp ----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 45689999999999999999999988764
No 76
>PF13173 AAA_14: AAA domain
Probab=94.21 E-value=0.13 Score=35.15 Aligned_cols=43 Identities=23% Similarity=0.353 Sum_probs=33.1
Q ss_pred EEEEEecCcCCchhHHHHHHHHHhc-ccceEEEecchhhHHHHH
Q psy4713 6 LILLFSGKRKSGKDFLTDYLLERIG-SQHCAIIRLSAPIKSHWA 48 (103)
Q Consensus 6 lIiL~sGKrksGKDy~a~~l~~~l~-~~~~~iv~iS~piK~~yA 48 (103)
-|++++|.|++||=+++..+.+.+. ..++..+.+.++--...+
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~ 46 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLA 46 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHh
Confidence 4789999999999999999888775 355666777777664433
No 77
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=94.15 E-value=0.088 Score=39.17 Aligned_cols=35 Identities=23% Similarity=0.311 Sum_probs=27.8
Q ss_pred eEEEEEecCcCCchhHHHHHHHHHhcccceEEEec
Q psy4713 5 KLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRL 39 (103)
Q Consensus 5 klIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~i 39 (103)
..||.|||-+||||-=+|..|..+|.+....++-|
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~L 36 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFARGIKVYLL 36 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEe
Confidence 47899999999999999999999997744444443
No 78
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=93.95 E-value=0.17 Score=41.45 Aligned_cols=49 Identities=22% Similarity=0.349 Sum_probs=36.8
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHHHcCccH
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQNGLEM 55 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~~~glDl 55 (103)
..+||+|+|-+||||--+|..|+.+|+-. .|++ .|.+.+..-....-|+
T Consensus 91 ~p~iIlI~G~sgsGKStlA~~La~~l~~~--~vi~-~D~~re~~R~~~~~e~ 139 (301)
T PRK04220 91 EPIIILIGGASGVGTSTIAFELASRLGIR--SVIG-TDSIREVMRKIISKEL 139 (301)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCC--EEEe-chHHHHHHHHhcchhh
Confidence 44889999999999999999999999632 4666 7777755544333333
No 79
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=93.86 E-value=0.071 Score=40.26 Aligned_cols=33 Identities=30% Similarity=0.467 Sum_probs=28.0
Q ss_pred EEEEecCcCCchhHHHHHHHHHhcccceEEEecch
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSA 41 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~ 41 (103)
||.|+|-+||||-.+|..|++.++ .+.++++.+
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~~--~~~~i~~Dd 33 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRILP--NCCVIHQDD 33 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcC--CCeEEcccc
Confidence 688999999999999999999985 466776664
No 80
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=93.85 E-value=0.085 Score=33.02 Aligned_cols=43 Identities=21% Similarity=0.237 Sum_probs=32.8
Q ss_pred eEEEEEecCcCCchhHHHHHHHHHhccc--ceEEEecchhhHHHH
Q psy4713 5 KLILLFSGKRKSGKDFLTDYLLERIGSQ--HCAIIRLSAPIKSHW 47 (103)
Q Consensus 5 klIiL~sGKrksGKDy~a~~l~~~l~~~--~~~iv~iS~piK~~y 47 (103)
.-.++|.|..||||-.++..+...+... .+..+..+...-...
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 46 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVL 46 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCH
Confidence 3478999999999999999999999875 366666555444333
No 81
>PRK00279 adk adenylate kinase; Reviewed
Probab=93.82 E-value=0.1 Score=38.59 Aligned_cols=53 Identities=19% Similarity=0.274 Sum_probs=39.1
Q ss_pred EEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHHH--cCccHHHhcCCC
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQ--NGLEMDKLLGAT 62 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~~--~glDl~~LL~d~ 62 (103)
.|+|+|..||||.=++..|++.++ +..++..+-++++-... +|-.+..++..+
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~---~~~is~~dl~r~~~~~~~~~~~~~~~~~~~g 56 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYG---IPHISTGDMLRAAVKAGTELGKEAKSYMDAG 56 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC---CcEEECCccHHHHHhccchHHHHHHHHHHcC
Confidence 488999999999999999999975 78888888888765542 233344444443
No 82
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=93.81 E-value=0.1 Score=39.70 Aligned_cols=36 Identities=17% Similarity=0.192 Sum_probs=30.3
Q ss_pred EEEEecCcCCchhHHHHHHHHHhc----ccceEEEecchh
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIG----SQHCAIIRLSAP 42 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~----~~~~~iv~iS~p 42 (103)
||-|+|-+||||--+++.|...+. ...+.+|++.+=
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f 40 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGF 40 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCcc
Confidence 678999999999999999999994 356778877654
No 83
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=93.66 E-value=0.15 Score=31.89 Aligned_cols=29 Identities=28% Similarity=0.489 Sum_probs=23.8
Q ss_pred EEEEecCcCCchhHHHHHHHHHhcccceE
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIGSQHCA 35 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~~~~~~ 35 (103)
+|.++|-++|||.=+++.|.++|....+.
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l~~~~~~ 29 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQLGGRSVV 29 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhcCCCEE
Confidence 57889999999999999999998333333
No 84
>PRK14528 adenylate kinase; Provisional
Probab=93.62 E-value=0.14 Score=37.54 Aligned_cols=54 Identities=22% Similarity=0.356 Sum_probs=39.4
Q ss_pred EEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHHHc--CccHHHhcCCCC
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQN--GLEMDKLLGATK 63 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~~~--glDl~~LL~d~~ 63 (103)
.|+|+|..||||.-++..|.+.++ +..++..+-+..+....+ |..+.+++..+.
T Consensus 3 ~i~i~G~pGsGKtt~a~~la~~~~---~~~is~~~~lr~~~~~~~~~g~~~~~~~~~g~ 58 (186)
T PRK14528 3 NIIFMGPPGAGKGTQAKILCERLS---IPQISTGDILREAVKNQTAMGIEAKRYMDAGD 58 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC---CCeeeCCHHHHHHhhcCCHHHHHHHHHHhCCC
Confidence 377899999999999999999875 677888888877665432 333445555444
No 85
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=93.57 E-value=0.1 Score=44.88 Aligned_cols=37 Identities=30% Similarity=0.456 Sum_probs=32.1
Q ss_pred CCeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchh
Q psy4713 3 QPKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAP 42 (103)
Q Consensus 3 ~pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~p 42 (103)
+|.+|+++.|..||||=++|+.+.+.++ +..|.+|+|
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg---~~~i~vsa~ 182 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMG---IEPIVMSAG 182 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcC---CCeEEEEHH
Confidence 6889999999999999999999999986 456666665
No 86
>PLN02459 probable adenylate kinase
Probab=93.55 E-value=0.18 Score=40.38 Aligned_cols=55 Identities=16% Similarity=0.251 Sum_probs=42.1
Q ss_pred EEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHHH--cCccHHHhcCCCC
Q psy4713 6 LILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQ--NGLEMDKLLGATK 63 (103)
Q Consensus 6 lIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~~--~glDl~~LL~d~~ 63 (103)
+.|+|.|..||||.-.+..|++.++ ...++..+-++++.+.. .|.-+++.+..|.
T Consensus 30 ~~ii~~G~PGsGK~T~a~~la~~~~---~~~is~gdllR~ei~~~t~lg~~i~~~~~~G~ 86 (261)
T PLN02459 30 VNWVFLGCPGVGKGTYASRLSKLLG---VPHIATGDLVREEIKSSGPLGAQLKEIVNQGK 86 (261)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC---CcEEeCcHHHHHHHhccchhHHHHHHHHHcCC
Confidence 5577789999999999999999974 77788888888887653 3445555665554
No 87
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=93.54 E-value=0.1 Score=40.68 Aligned_cols=37 Identities=30% Similarity=0.348 Sum_probs=29.0
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhH
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIK 44 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK 44 (103)
.-.++++||+||+||+=+...|.+.. ---+|||..|+
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~----~l~~SVS~TTR 39 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDD----KLRFSVSATTR 39 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhc----CeEEEEEeccC
Confidence 45688899999999999999998886 33456676554
No 88
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=93.51 E-value=0.12 Score=38.15 Aligned_cols=38 Identities=16% Similarity=0.314 Sum_probs=28.4
Q ss_pred eEEEEEecCcCCchhHHHHHHHHHhcc--cceEEEecchh
Q psy4713 5 KLILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRLSAP 42 (103)
Q Consensus 5 klIiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~iS~p 42 (103)
.-.++|+|++|+||-+++..|...... ..+..+..+..
T Consensus 42 ~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~ 81 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASP 81 (227)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHh
Confidence 346889999999999999999987633 34555555443
No 89
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=93.47 E-value=0.21 Score=40.94 Aligned_cols=65 Identities=22% Similarity=0.270 Sum_probs=49.3
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhcc--cceEEEecchhhHHHHHHHcCccHHHhcCCCC-cHHHh
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRLSAPIKSHWAKQNGLEMDKLLGATK-YKEKY 68 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~iS~piK~~yA~~~glDl~~LL~d~~-YKE~~ 68 (103)
+--|++|.|..+|||=-++-.+...... ..|..|..-++.-.+||+..|+|+++|+-..+ .-|+.
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~ 121 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQA 121 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHH
Confidence 4468999999999998887665544432 56777777777778899999999999987654 34444
No 90
>PRK09354 recA recombinase A; Provisional
Probab=93.45 E-value=0.21 Score=41.60 Aligned_cols=65 Identities=23% Similarity=0.267 Sum_probs=49.8
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhcc--cceEEEecchhhHHHHHHHcCccHHHhcCCCC-cHHHh
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRLSAPIKSHWAKQNGLEMDKLLGATK-YKEKY 68 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~iS~piK~~yA~~~glDl~~LL~d~~-YKE~~ 68 (103)
+--|++|.|..+|||=-++-.+...... ..|.-|..-++.-..||+..|+|+++|+-..+ .-|+.
T Consensus 59 ~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~Eq~ 126 (349)
T PRK09354 59 RGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQA 126 (349)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHHHH
Confidence 3458999999999998877765543322 56777888888888999999999999987654 44544
No 91
>PTZ00088 adenylate kinase 1; Provisional
Probab=93.44 E-value=0.13 Score=39.74 Aligned_cols=40 Identities=13% Similarity=0.208 Sum_probs=34.7
Q ss_pred EEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHH
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAK 49 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~ 49 (103)
-|+|.|..||||.-++..|++.++ +..+++.+-+.++-+.
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~g---~~~is~gdllr~~~~~ 47 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKEN---LKHINMGNILREEIKA 47 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC---CcEEECChHHHHHhhc
Confidence 378899999999999999999974 8889999999877654
No 92
>PRK14532 adenylate kinase; Provisional
Probab=93.41 E-value=0.19 Score=35.94 Aligned_cols=38 Identities=21% Similarity=0.299 Sum_probs=33.1
Q ss_pred EEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHH
Q psy4713 8 LLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWA 48 (103)
Q Consensus 8 iL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA 48 (103)
|+|.|..||||.-++..|++.++ +..++..+-++++.+
T Consensus 3 i~~~G~pGsGKsT~a~~la~~~g---~~~is~~d~lr~~~~ 40 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVEERG---MVQLSTGDMLRAAIA 40 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC---CeEEeCcHHHHHHHH
Confidence 67899999999999999999875 777888888888754
No 93
>PRK05439 pantothenate kinase; Provisional
Probab=93.39 E-value=0.16 Score=41.51 Aligned_cols=41 Identities=12% Similarity=0.174 Sum_probs=34.4
Q ss_pred CCCeEEEEEecCcCCchhHHHHHHHHHhcc----cceEEEecchh
Q psy4713 2 TQPKLILLFSGKRKSGKDFLTDYLLERIGS----QHCAIIRLSAP 42 (103)
Q Consensus 2 ~~pklIiL~sGKrksGKDy~a~~l~~~l~~----~~~~iv~iS~p 42 (103)
+...+||.|+|-.||||--+|+.|+..++. ..+.+|++-+=
T Consensus 83 ~~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdF 127 (311)
T PRK05439 83 QKVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGF 127 (311)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEecccc
Confidence 356789999999999999999999998864 36788887763
No 94
>PLN02348 phosphoribulokinase
Probab=93.36 E-value=0.16 Score=43.11 Aligned_cols=29 Identities=14% Similarity=0.253 Sum_probs=26.5
Q ss_pred CCeEEEEEecCcCCchhHHHHHHHHHhcc
Q psy4713 3 QPKLILLFSGKRKSGKDFLTDYLLERIGS 31 (103)
Q Consensus 3 ~pklIiL~sGKrksGKDy~a~~l~~~l~~ 31 (103)
+.++||-|+|-+||||--++..|.+.|+.
T Consensus 47 ~~p~IIGIaG~SGSGKSTfA~~L~~~Lg~ 75 (395)
T PLN02348 47 DGTVVIGLAADSGCGKSTFMRRLTSVFGG 75 (395)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 45789999999999999999999999974
No 95
>PRK02496 adk adenylate kinase; Provisional
Probab=93.33 E-value=0.17 Score=36.18 Aligned_cols=39 Identities=21% Similarity=0.248 Sum_probs=33.0
Q ss_pred EEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHH
Q psy4713 8 LLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAK 49 (103)
Q Consensus 8 iL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~ 49 (103)
|+|+|..||||.=++..|++.++ +..++..+-+.+++..
T Consensus 4 i~i~G~pGsGKst~a~~la~~~~---~~~i~~~~~~~~~~~~ 42 (184)
T PRK02496 4 LIFLGPPGAGKGTQAVVLAEHLH---IPHISTGDILRQAIKE 42 (184)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC---CcEEEhHHHHHHHHhc
Confidence 77899999999999999999974 6778888888877644
No 96
>PLN02422 dephospho-CoA kinase
Probab=93.28 E-value=0.76 Score=36.02 Aligned_cols=39 Identities=13% Similarity=0.208 Sum_probs=33.1
Q ss_pred EEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHH
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAK 49 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~ 49 (103)
+|.+||.-||||-.+++.|.+ + .+.+++--.-.++.|++
T Consensus 3 ~igltG~igsGKstv~~~l~~-~---g~~~idaD~~~~~l~~~ 41 (232)
T PLN02422 3 VVGLTGGIASGKSTVSNLFKS-S---GIPVVDADKVARDVLKK 41 (232)
T ss_pred EEEEECCCCCCHHHHHHHHHH-C---CCeEEehhHHHHHHHHh
Confidence 789999999999999999984 4 47788888878888876
No 97
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=93.12 E-value=0.31 Score=40.15 Aligned_cols=65 Identities=23% Similarity=0.262 Sum_probs=50.4
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhcc--cceEEEecchhhHHHHHHHcCccHHHhcCCCCc-HHHh
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRLSAPIKSHWAKQNGLEMDKLLGATKY-KEKY 68 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~iS~piK~~yA~~~glDl~~LL~d~~Y-KE~~ 68 (103)
+--|++|.|..+|||=-++-.+...... ..|..|..-++.-.+||+..|.|+++|+-..++ -|+.
T Consensus 54 ~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~ 121 (325)
T cd00983 54 KGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQA 121 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHH
Confidence 3458899999999998877776544322 567788888888889999999999999977654 3443
No 98
>PRK00023 cmk cytidylate kinase; Provisional
Probab=93.03 E-value=0.14 Score=38.95 Aligned_cols=52 Identities=19% Similarity=0.363 Sum_probs=35.6
Q ss_pred CCCCeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhh--HHHHHHHcCccHH
Q psy4713 1 MTQPKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPI--KSHWAKQNGLEMD 56 (103)
Q Consensus 1 ~~~pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~pi--K~~yA~~~glDl~ 56 (103)
|+. +.||.|+|..||||--++..+++.++- ..+.-..-. =...|...|+|++
T Consensus 1 ~~~-~~~i~i~g~~gsGksti~~~la~~~~~---~~~~~~~~~r~~~~~~~~~g~~~~ 54 (225)
T PRK00023 1 MMK-AIVIAIDGPAGSGKGTVAKILAKKLGF---HYLDTGAMYRAVALAALRHGVDLE 54 (225)
T ss_pred CCC-ceEEEEECCCCCCHHHHHHHHHHHhCC---CcccCchhHHHHHHHHHHcCCCCC
Confidence 455 589999999999999999999999862 222211111 1235567787654
No 99
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=93.03 E-value=0.11 Score=41.47 Aligned_cols=24 Identities=25% Similarity=0.386 Sum_probs=20.9
Q ss_pred EEEEecCcCCchhHHHHHHHHHhc
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIG 30 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~ 30 (103)
=|||+|++|+||.++|..++..-.
T Consensus 31 pVlI~GE~GtGK~~lA~~iH~~s~ 54 (326)
T PRK11608 31 PVLIIGERGTGKELIASRLHYLSS 54 (326)
T ss_pred CEEEECCCCCcHHHHHHHHHHhCC
Confidence 478999999999999999986544
No 100
>PRK14737 gmk guanylate kinase; Provisional
Probab=92.99 E-value=0.12 Score=38.43 Aligned_cols=26 Identities=23% Similarity=0.318 Sum_probs=23.0
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHh
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERI 29 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l 29 (103)
+..+|+|+|.+||||+=+++.|.+.+
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 45678899999999999999998876
No 101
>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2.7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.
Probab=92.76 E-value=0.23 Score=37.07 Aligned_cols=36 Identities=25% Similarity=0.398 Sum_probs=27.5
Q ss_pred EEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHH
Q psy4713 6 LILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKS 45 (103)
Q Consensus 6 lIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~ 45 (103)
+||-+||.-||||-+++..|.+ +| +.|+..-.-.++
T Consensus 1 ~iIglTG~igsGKStv~~~l~~-~G---~~vidaD~i~~~ 36 (180)
T PF01121_consen 1 MIIGLTGGIGSGKSTVSKILAE-LG---FPVIDADEIAHE 36 (180)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH-TT----EEEEHHHHHHH
T ss_pred CEEEEECCCcCCHHHHHHHHHH-CC---CCEECccHHHHH
Confidence 5899999999999999999998 54 666655444333
No 102
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=92.61 E-value=0.89 Score=32.86 Aligned_cols=40 Identities=25% Similarity=0.379 Sum_probs=31.1
Q ss_pred EEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHH
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAK 49 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~ 49 (103)
||.|||.-||||-.+++.|.+.. .+.++..-.-.++.|..
T Consensus 1 ~i~itG~~gsGKst~~~~l~~~~---~~~~i~~D~~~~~~~~~ 40 (188)
T TIGR00152 1 IIGLTGGIGSGKSTVANYLADKY---HFPVIDADKIAHQVVEK 40 (188)
T ss_pred CEEEECCCCCCHHHHHHHHHHhc---CCeEEeCCHHHHHHHhc
Confidence 58999999999999999999875 35667666555555544
No 103
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=92.59 E-value=0.16 Score=35.66 Aligned_cols=38 Identities=18% Similarity=0.344 Sum_probs=29.7
Q ss_pred EEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHH
Q psy4713 6 LILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSH 46 (103)
Q Consensus 6 lIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~ 46 (103)
-||+|.|.+||||--++..|.+.+| ...++.++-+.++
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~~~g---~~~~~~g~~~~~~ 41 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVEKYG---FTHLSTGDLLRAE 41 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC---CcEEeHHHHHHHH
Confidence 3788899999999999999999885 4455665555554
No 104
>PLN02674 adenylate kinase
Probab=92.53 E-value=0.27 Score=38.81 Aligned_cols=58 Identities=14% Similarity=0.210 Sum_probs=45.5
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHHH--cCccHHHhcCCCCc
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQ--NGLEMDKLLGATKY 64 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~~--~glDl~~LL~d~~Y 64 (103)
+...|+|.|..||||.-.+..|++.++ +.-|+..+=++++-+.. .|..+.+++..|..
T Consensus 30 ~~~~i~l~G~PGsGKgT~a~~La~~~~---~~his~GdllR~~i~~~s~~g~~i~~~~~~G~l 89 (244)
T PLN02674 30 PDKRLILIGPPGSGKGTQSPIIKDEYC---LCHLATGDMLRAAVAAKTPLGIKAKEAMDKGEL 89 (244)
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHcC---CcEEchhHHHHHHHhccChhhHHHHHHHHcCCc
Confidence 345678899999999999999999975 77788888888876553 46667777777665
No 105
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=92.51 E-value=0.42 Score=40.13 Aligned_cols=57 Identities=21% Similarity=0.378 Sum_probs=42.8
Q ss_pred eEEEEEecCcCCchhHHHHHHHHHh-cc-cceEEEecchhhHHH--HHHHcCccHHHhcCC
Q psy4713 5 KLILLFSGKRKSGKDFLTDYLLERI-GS-QHCAIIRLSAPIKSH--WAKQNGLEMDKLLGA 61 (103)
Q Consensus 5 klIiL~sGKrksGKDy~a~~l~~~l-~~-~~~~iv~iS~piK~~--yA~~~glDl~~LL~d 61 (103)
--+++|+|..|+||-.++..+.... .. .+|..+++.++..+. .+...|.|+++++.+
T Consensus 273 g~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e~~~~~i~~~~~~~g~~~~~~~~~ 333 (509)
T PRK09302 273 GSIILVSGATGTGKTLLASKFAEAACRRGERCLLFAFEESRAQLIRNARSWGIDLEKMEEK 333 (509)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHcCCChHHHhhc
Confidence 3578889999999999887776543 22 688888888775543 556789999987544
No 106
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=92.51 E-value=0.18 Score=44.25 Aligned_cols=58 Identities=22% Similarity=0.385 Sum_probs=43.4
Q ss_pred CCCeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHH--------HHHcCccHHHhc
Q psy4713 2 TQPKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHW--------AKQNGLEMDKLL 59 (103)
Q Consensus 2 ~~pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~y--------A~~~glDl~~LL 59 (103)
..|.=+|||||..||||--.--...+.+......|+.+.||+--.. -+..|+++++.|
T Consensus 255 ~~p~GliLvTGPTGSGKTTTLY~~L~~ln~~~~nI~TiEDPVE~~~~gI~Q~qVN~k~gltfa~~L 320 (500)
T COG2804 255 NRPQGLILVTGPTGSGKTTTLYAALSELNTPERNIITIEDPVEYQLPGINQVQVNPKIGLTFARAL 320 (500)
T ss_pred hCCCeEEEEeCCCCCCHHHHHHHHHHHhcCCCceEEEeeCCeeeecCCcceeecccccCCCHHHHH
Confidence 5688899999999999987666666666666666999999984322 245677777765
No 107
>PRK08116 hypothetical protein; Validated
Probab=92.50 E-value=0.31 Score=38.21 Aligned_cols=37 Identities=16% Similarity=0.301 Sum_probs=28.4
Q ss_pred eEEEEEecCcCCchhHHHHHHHHHhcc--cceEEEecch
Q psy4713 5 KLILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRLSA 41 (103)
Q Consensus 5 klIiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~iS~ 41 (103)
..-++|.|..|+||=+++..+...+.+ ..+..++.++
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ 152 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQ 152 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHH
Confidence 346899999999999999999998865 3444455444
No 108
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=92.43 E-value=0.19 Score=35.03 Aligned_cols=37 Identities=24% Similarity=0.518 Sum_probs=27.9
Q ss_pred EEEEEecCcCCchhHHHHHHHHHhcccceEEEecchh
Q psy4713 6 LILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAP 42 (103)
Q Consensus 6 lIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~p 42 (103)
.+|+|.|-.||||--+++.|++.+......++.++.|
T Consensus 1 ~~I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~~~~~~ 37 (200)
T cd01672 1 MFIVFEGIDGAGKTTLIELLAERLEARGYEVVLTREP 37 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCC
Confidence 3789999999999999999999996533333444433
No 109
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=92.41 E-value=0.14 Score=35.95 Aligned_cols=25 Identities=32% Similarity=0.511 Sum_probs=21.6
Q ss_pred EEEEecCcCCchhHHHHHHHHHhcc
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIGS 31 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~~ 31 (103)
+|+|.|.+||||+=+++.|...+..
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~~ 25 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFDP 25 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCCc
Confidence 4678999999999999999988653
No 110
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=92.39 E-value=0.2 Score=33.19 Aligned_cols=41 Identities=22% Similarity=0.253 Sum_probs=30.4
Q ss_pred EEEEecCcCCchhHHHHHHHHHhcc--cceEEEecchhhHHHH
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRLSAPIKSHW 47 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~iS~piK~~y 47 (103)
+++|+|++|+||=.++..+...+.. ..+..++.....-...
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~ 43 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELT 43 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHH
Confidence 5799999999999999988887754 4555666655554443
No 111
>PRK12377 putative replication protein; Provisional
Probab=92.39 E-value=0.24 Score=38.97 Aligned_cols=38 Identities=21% Similarity=0.406 Sum_probs=30.4
Q ss_pred EEEEecCcCCchhHHHHHHHHHhcc--cceEEEecchhhH
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRLSAPIK 44 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~iS~piK 44 (103)
-++|+|..|+||-+++..+...+.. ..+..++.++.+.
T Consensus 103 ~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~ 142 (248)
T PRK12377 103 NFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMS 142 (248)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHH
Confidence 4789999999999999999999865 4566667666443
No 112
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=92.32 E-value=0.61 Score=35.47 Aligned_cols=59 Identities=12% Similarity=0.181 Sum_probs=42.5
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhcc--cceEEEecchhhHH--HHHHHcCccHHHhcCCC
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRLSAPIKS--HWAKQNGLEMDKLLGAT 62 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~iS~piK~--~yA~~~glDl~~LL~d~ 62 (103)
+.-++||+|..||||--.+-......-+ ..|-.|+++++-.. +.+..+|.|++.+..++
T Consensus 22 ~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~~~~l~~~~~~~g~d~~~~~~~g 84 (260)
T COG0467 22 RGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEESPEELLENARSFGWDLEVYIEKG 84 (260)
T ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecCCHHHHHHHHHHcCCCHHHHhhcC
Confidence 4568999999999999877766655443 56888888765432 34445999999776554
No 113
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=92.32 E-value=0.65 Score=35.09 Aligned_cols=58 Identities=16% Similarity=0.212 Sum_probs=42.1
Q ss_pred CeEEEEEecCcCCchhHHHHHH-HHHhcc-cceEEEecchhhHH--HHHHHcCccHHHhcCC
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYL-LERIGS-QHCAIIRLSAPIKS--HWAKQNGLEMDKLLGA 61 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l-~~~l~~-~~~~iv~iS~piK~--~yA~~~glDl~~LL~d 61 (103)
|--++||+|.+||||--++..+ ...+.. ..|..|++.++..+ +.+++.|.|++++..+
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee~~~~i~~~~~~~g~~~~~~~~~ 81 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEEHPVQVRRNMAQFGWDVRKYEEE 81 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeCCHHHHHHHHHHhCCCHHHHhhc
Confidence 4568999999999999877654 344432 68888998886654 2355789999877533
No 114
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=92.30 E-value=0.16 Score=40.94 Aligned_cols=24 Identities=25% Similarity=0.354 Sum_probs=21.3
Q ss_pred EEEEecCcCCchhHHHHHHHHHhc
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIG 30 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~ 30 (103)
=|||+|++|+||.++|..++..-.
T Consensus 24 pVLI~GE~GtGK~~lAr~iH~~s~ 47 (329)
T TIGR02974 24 PVLIIGERGTGKELIAARLHYLSK 47 (329)
T ss_pred CEEEECCCCChHHHHHHHHHHhcC
Confidence 479999999999999999987654
No 115
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=92.28 E-value=0.98 Score=35.55 Aligned_cols=40 Identities=18% Similarity=0.241 Sum_probs=29.5
Q ss_pred EEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHH
Q psy4713 6 LILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWA 48 (103)
Q Consensus 6 lIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA 48 (103)
+||-+||.-||||-.+++.|.+.+| +.|+.--.-.++.|.
T Consensus 2 ~iIGlTGgIgSGKStVs~~L~~~~G---~~viDaD~iar~l~~ 41 (244)
T PTZ00451 2 ILIGLTGGIACGKSTVSRILREEHH---IEVIDADLVVRELQA 41 (244)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcC---CeEEehHHHHHHHHc
Confidence 6899999999999999999998764 445544333344443
No 116
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=92.27 E-value=0.17 Score=35.84 Aligned_cols=25 Identities=32% Similarity=0.574 Sum_probs=22.6
Q ss_pred EEEEecCcCCchhHHHHHHHHHhcc
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIGS 31 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~~ 31 (103)
+++|+|.+||||.=+++.|...++.
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~~~~ 27 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARARLAG 27 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCc
Confidence 6899999999999999999988753
No 117
>PRK14738 gmk guanylate kinase; Provisional
Probab=92.19 E-value=0.18 Score=37.57 Aligned_cols=24 Identities=33% Similarity=0.504 Sum_probs=20.6
Q ss_pred eEEEEEecCcCCchhHHHHHHHHH
Q psy4713 5 KLILLFSGKRKSGKDFLTDYLLER 28 (103)
Q Consensus 5 klIiL~sGKrksGKDy~a~~l~~~ 28 (103)
..+|+|+|.+||||+=+++.|...
T Consensus 13 ~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 13 PLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CeEEEEECcCCCCHHHHHHHHHhc
Confidence 456788999999999999999764
No 118
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=92.19 E-value=0.21 Score=34.77 Aligned_cols=52 Identities=19% Similarity=0.268 Sum_probs=40.4
Q ss_pred EecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHHH--cCccHHHhcCCCCc
Q psy4713 10 FSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQ--NGLEMDKLLGATKY 64 (103)
Q Consensus 10 ~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~~--~glDl~~LL~d~~Y 64 (103)
|-|.+||||.=++..|++.++ +..|+..+=++++-+.. +|..+++.+..+..
T Consensus 1 i~G~PgsGK~t~~~~la~~~~---~~~is~~~llr~~~~~~s~~g~~i~~~l~~g~~ 54 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYG---LVHISVGDLLREEIKSDSELGKQIQEYLDNGEL 54 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHT---SEEEEHHHHHHHHHHTTSHHHHHHHHHHHTTSS
T ss_pred CcCCCCCChHHHHHHHHHhcC---cceechHHHHHHHHhhhhHHHHHHHHHHHhhcc
Confidence 569999999999999999984 77888989888877653 35566666665553
No 119
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=92.18 E-value=0.25 Score=36.54 Aligned_cols=37 Identities=24% Similarity=0.461 Sum_probs=31.9
Q ss_pred EEEEecCcCCchhHHHHHHHHHhcc-cceEEEecchhh
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIGS-QHCAIIRLSAPI 43 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~~-~~~~iv~iS~pi 43 (103)
+|+|+|..||||--+...+...+.. ....|+.+.+|+
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~ 40 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPI 40 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCc
Confidence 6899999999999999988887764 356889999997
No 120
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=92.01 E-value=0.17 Score=41.26 Aligned_cols=32 Identities=13% Similarity=0.301 Sum_probs=27.2
Q ss_pred EEEEecCcCCchhHHHHHHHHHhccc--ceEEEe
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIGSQ--HCAIIR 38 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~~~--~~~iv~ 38 (103)
||.|+|-+||||--+++.+.+.|++. .+.++.
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~ 34 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVE 34 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCceEEEe
Confidence 68899999999999999999999763 456655
No 121
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=92.00 E-value=0.29 Score=29.66 Aligned_cols=25 Identities=24% Similarity=0.429 Sum_probs=22.8
Q ss_pred EEEEecCcCCchhHHHHHHHHHhcc
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIGS 31 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~~ 31 (103)
|++|+|+.|+||-.++..+...+.+
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~~l~~ 25 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAAALAK 25 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5789999999999999999999865
No 122
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=91.96 E-value=0.2 Score=43.44 Aligned_cols=29 Identities=24% Similarity=0.403 Sum_probs=25.5
Q ss_pred CCeEEEEEecCcCCchhHHHHHHHHHhcc
Q psy4713 3 QPKLILLFSGKRKSGKDFLTDYLLERIGS 31 (103)
Q Consensus 3 ~pklIiL~sGKrksGKDy~a~~l~~~l~~ 31 (103)
.+..+|+++|-+||||..+|..|..+|..
T Consensus 458 ~~~~~i~~~G~~gsGKst~a~~l~~~l~~ 486 (632)
T PRK05506 458 QKPATVWFTGLSGSGKSTIANLVERRLHA 486 (632)
T ss_pred CCcEEEEecCCCCchHHHHHHHHHHHHHH
Confidence 45678889999999999999999999864
No 123
>TIGR03708 poly_P_AMP_trns polyphosphate:AMP phosphotransferase. Members of this protein family contain a domain duplication. The characterized member from Acinetobacter johnsonii is polyphosphate:AMP phosphotransferase (PAP), which can transfer the terminal phosphate from poly(P) to AMP, yielding ADP. In the opposite direction, this enzyme can synthesize poly(P). Each domain of this protein family is homologous to polyphosphate kinase, an enzyme that can run in the forward direction to extend a polyphosphate chain with a new terminal phosphate from ATP, or in reverse to make ATP (or GTP) from ADP (or GDP).
Probab=91.90 E-value=0.34 Score=42.13 Aligned_cols=46 Identities=17% Similarity=0.192 Sum_probs=42.2
Q ss_pred CCeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHH
Q psy4713 3 QPKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWA 48 (103)
Q Consensus 3 ~pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA 48 (103)
+.++||+|.|=-+||||-+.+.+.+.+....+.|.+++.|+.+|-+
T Consensus 38 ~~~vlIv~eG~DaaGKg~~I~~l~~~ldprg~~v~~~~~P~~eE~~ 83 (493)
T TIGR03708 38 GFPVIILIEGWDGAGKGETINLLNEWMDPRGIETHAFGRPSDEERE 83 (493)
T ss_pred CCeEEEEEeCCCCCChHHHHHHHHHHhCcCccEEEeCCCCCHHHhc
Confidence 4679999999999999999999999999989999999999887754
No 124
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=91.86 E-value=1.7 Score=33.36 Aligned_cols=40 Identities=18% Similarity=0.152 Sum_probs=30.6
Q ss_pred eEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHH
Q psy4713 5 KLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHW 47 (103)
Q Consensus 5 klIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~y 47 (103)
.++|-+||.-||||-.++..+.+.+| +.++..-...++.|
T Consensus 6 ~~~IglTG~iGsGKStv~~~l~~~lg---~~vidaD~i~~~l~ 45 (204)
T PRK14733 6 TYPIGITGGIASGKSTATRILKEKLN---LNVVCADTISREIT 45 (204)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHcC---CeEEeccHHHHHHH
Confidence 37899999999999999999998876 34555444444444
No 125
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=91.85 E-value=0.69 Score=35.29 Aligned_cols=58 Identities=14% Similarity=0.226 Sum_probs=38.1
Q ss_pred CeEEEEEecCcCCchhHHHH-HHHHHhcc-cceEEEecchhhHHH--HHHHcCccHHHhcCC
Q psy4713 4 PKLILLFSGKRKSGKDFLTD-YLLERIGS-QHCAIIRLSAPIKSH--WAKQNGLEMDKLLGA 61 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~-~l~~~l~~-~~~~iv~iS~piK~~--yA~~~glDl~~LL~d 61 (103)
+.-+++++|..||||-.++- .+...+.. ..+..++..++..+. .++..|.|++++...
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~~~~~~~~~~~g~~~~~~~~~ 84 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTTTEFIKQMMSLGYDINKKLIS 84 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhCCchHHHhhc
Confidence 34589999999999999974 44444333 455556655443332 235789999887554
No 126
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=91.78 E-value=0.16 Score=35.76 Aligned_cols=24 Identities=33% Similarity=0.436 Sum_probs=21.8
Q ss_pred EEEEecCcCCchhHHHHHHHHHhc
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIG 30 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~ 30 (103)
||+|.|.+||||.=++..|...+.
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~~~ 26 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEEDP 26 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHccCc
Confidence 789999999999999999998764
No 127
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=91.57 E-value=0.2 Score=42.20 Aligned_cols=25 Identities=16% Similarity=0.291 Sum_probs=22.1
Q ss_pred EEEEEecCcCCchhHHHHHHHHHhc
Q psy4713 6 LILLFSGKRKSGKDFLTDYLLERIG 30 (103)
Q Consensus 6 lIiL~sGKrksGKDy~a~~l~~~l~ 30 (103)
.-|||+|++|+||.++|..++....
T Consensus 220 ~pvli~Ge~GtGK~~lA~~ih~~s~ 244 (534)
T TIGR01817 220 STVLLRGESGTGKELIAKAIHYLSP 244 (534)
T ss_pred CCEEEECCCCccHHHHHHHHHHhCC
Confidence 3479999999999999999998754
No 128
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=91.48 E-value=0.8 Score=35.45 Aligned_cols=56 Identities=16% Similarity=0.347 Sum_probs=40.5
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHH-hcc-cceEEEecchhhH------HHHHHHcCccHHHhc
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLER-IGS-QHCAIIRLSAPIK------SHWAKQNGLEMDKLL 59 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~-l~~-~~~~iv~iS~piK------~~yA~~~glDl~~LL 59 (103)
+--++||+|.+|+||=-++-.+.-. +.. ..|..+++-.|.. +.-|...|+|++++.
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~Ee~~~~~~~~l~~~a~~~g~d~~~~~ 98 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVESPANFVYTSLKERAKAMGVDFDKIE 98 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCchHHHHHHHHHHHHcCCCHHHHh
Confidence 4568999999999998777765443 222 5788888877653 224677899998764
No 129
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=91.42 E-value=0.22 Score=42.06 Aligned_cols=25 Identities=16% Similarity=0.248 Sum_probs=22.1
Q ss_pred EEEEecCcCCchhHHHHHHHHHhcc
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIGS 31 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~~ 31 (103)
=|||+|++|+||.++|..++.....
T Consensus 212 pVlI~Ge~GtGK~~~A~~ih~~s~r 236 (509)
T PRK05022 212 NVLILGETGVGKELVARAIHAASPR 236 (509)
T ss_pred cEEEECCCCccHHHHHHHHHHhCCc
Confidence 4899999999999999999987653
No 130
>PRK03839 putative kinase; Provisional
Probab=91.37 E-value=0.26 Score=35.11 Aligned_cols=32 Identities=25% Similarity=0.509 Sum_probs=26.0
Q ss_pred EEEEecCcCCchhHHHHHHHHHhcccceEEEecch
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSA 41 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~ 41 (103)
+|+|+|-+||||--++..|+++++ ...+.+.+
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~---~~~id~d~ 33 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLG---YEYVDLTE 33 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC---CcEEehhh
Confidence 588999999999999999999985 34444444
No 131
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=91.35 E-value=0.48 Score=43.18 Aligned_cols=55 Identities=20% Similarity=0.285 Sum_probs=39.4
Q ss_pred CCeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHHHcCccHHHhcCCC
Q psy4713 3 QPKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQNGLEMDKLLGAT 62 (103)
Q Consensus 3 ~pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~~~glDl~~LL~d~ 62 (103)
.|.-++||.|.+|+||=++|..|++.+......++++.- .+|...|. ..+|++++
T Consensus 594 ~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dm---se~~~~~~--~~~l~g~~ 648 (852)
T TIGR03345 594 KPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINM---SEFQEAHT--VSRLKGSP 648 (852)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeH---HHhhhhhh--hccccCCC
Confidence 466689999999999999999999998654445555552 25655553 34676664
No 132
>PRK13808 adenylate kinase; Provisional
Probab=91.16 E-value=0.37 Score=39.91 Aligned_cols=53 Identities=17% Similarity=0.302 Sum_probs=39.8
Q ss_pred EEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHHH--cCccHHHhcCCCC
Q psy4713 8 LLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQ--NGLEMDKLLGATK 63 (103)
Q Consensus 8 iL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~~--~glDl~~LL~d~~ 63 (103)
|+|.|-.||||.-.+..|.+.++ +..+++.+=+.++.+.. +|..+.++++.+.
T Consensus 3 Iiv~GpPGSGK~T~a~~LA~~yg---l~~is~gdlLR~~i~~~s~~g~~~~~~~~~G~ 57 (333)
T PRK13808 3 LILLGPPGAGKGTQAQRLVQQYG---IVQLSTGDMLRAAVAAGTPVGLKAKDIMASGG 57 (333)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC---CceecccHHHHHHhhcCChhhHHHHHHHHcCC
Confidence 67799999999999999999974 67788888887765443 3445555655544
No 133
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=91.12 E-value=1.4 Score=33.00 Aligned_cols=38 Identities=21% Similarity=0.141 Sum_probs=28.2
Q ss_pred EEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHH
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWA 48 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA 48 (103)
+|.+||..||||-.+++.+.. +| +.+++...-.++.|.
T Consensus 1 ~i~itG~~gsGKst~~~~l~~-~g---~~~i~~D~i~~~~~~ 38 (196)
T PRK14732 1 LIGITGMIGGGKSTALKILEE-LG---AFGISADRLAKRYTE 38 (196)
T ss_pred CEEEECCCCccHHHHHHHHHH-CC---CEEEecchHHHHHHh
Confidence 478999999999999998875 33 666666555555544
No 134
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=91.12 E-value=0.46 Score=36.32 Aligned_cols=38 Identities=18% Similarity=0.307 Sum_probs=32.5
Q ss_pred CCeEEEEEecCcCCchhHHHHHHHHHhccc---ceEEEecc
Q psy4713 3 QPKLILLFSGKRKSGKDFLTDYLLERIGSQ---HCAIIRLS 40 (103)
Q Consensus 3 ~pklIiL~sGKrksGKDy~a~~l~~~l~~~---~~~iv~iS 40 (103)
.+.++|-++|+-||||=.+.+.|.+.+.+. ...++.++
T Consensus 18 ~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~~~~~~~~i~fn 58 (325)
T PF07693_consen 18 DDPFVIGLYGEWGSGKSSFLNMLKEELKEDNKEKYIFIYFN 58 (325)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhcccccceeeEEEc
Confidence 578999999999999999999999999875 56666554
No 135
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=91.11 E-value=0.2 Score=34.96 Aligned_cols=24 Identities=29% Similarity=0.529 Sum_probs=21.5
Q ss_pred EEEecCcCCchhHHHHHHHHHhcc
Q psy4713 8 LLFSGKRKSGKDFLTDYLLERIGS 31 (103)
Q Consensus 8 iL~sGKrksGKDy~a~~l~~~l~~ 31 (103)
|+++|.+||||-.++..|...++.
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~ 24 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGA 24 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCC
Confidence 468899999999999999999863
No 136
>PRK14526 adenylate kinase; Provisional
Probab=91.01 E-value=0.38 Score=36.61 Aligned_cols=54 Identities=19% Similarity=0.287 Sum_probs=40.5
Q ss_pred EEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHHH--cCccHHHhcCCCCc
Q psy4713 8 LLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQ--NGLEMDKLLGATKY 64 (103)
Q Consensus 8 iL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~~--~glDl~~LL~d~~Y 64 (103)
|+|.|..||||.-.+..|++.++ ...++..+-++++.... .|..+.+++..+.+
T Consensus 3 i~l~G~pGsGKsT~a~~La~~~~---~~~is~G~llr~~~~~~t~~g~~i~~~~~~g~l 58 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSNELN---YYHISTGDLFRENILNSTPLGKEIKQIVENGQL 58 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC---CceeecChHHHHhcccCChhhHHHHHHHHcCcc
Confidence 66899999999999999998874 56677777777766542 35566777666654
No 137
>PLN02796 D-glycerate 3-kinase
Probab=91.00 E-value=0.44 Score=39.82 Aligned_cols=38 Identities=21% Similarity=0.280 Sum_probs=31.4
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhccc--ceEEEecch
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIGSQ--HCAIIRLSA 41 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~~~--~~~iv~iS~ 41 (103)
+.+||-|+|.+||||=-++..|...+... .+.+|++-+
T Consensus 99 ~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDd 138 (347)
T PLN02796 99 PPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDD 138 (347)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECC
Confidence 66999999999999999999999998753 456666643
No 138
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=90.91 E-value=0.33 Score=39.75 Aligned_cols=41 Identities=29% Similarity=0.436 Sum_probs=35.1
Q ss_pred eEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHH
Q psy4713 5 KLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKS 45 (103)
Q Consensus 5 klIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~ 45 (103)
..|+.+||.-||||=|+...+...+.++...++-|+.|+=.
T Consensus 51 qg~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s 91 (269)
T COG3267 51 QGILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLS 91 (269)
T ss_pred CceEEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchh
Confidence 45899999999999999998888888888888888888644
No 139
>PRK00698 tmk thymidylate kinase; Validated
Probab=90.90 E-value=0.73 Score=32.83 Aligned_cols=27 Identities=19% Similarity=0.294 Sum_probs=24.3
Q ss_pred eEEEEEecCcCCchhHHHHHHHHHhcc
Q psy4713 5 KLILLFSGKRKSGKDFLTDYLLERIGS 31 (103)
Q Consensus 5 klIiL~sGKrksGKDy~a~~l~~~l~~ 31 (103)
..+|+|.|-.||||.-+++.|.+.+..
T Consensus 3 ~~~I~ieG~~gsGKsT~~~~L~~~l~~ 29 (205)
T PRK00698 3 GMFITIEGIDGAGKSTQIELLKELLEQ 29 (205)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 458889999999999999999999865
No 140
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=90.67 E-value=0.46 Score=34.95 Aligned_cols=43 Identities=23% Similarity=0.415 Sum_probs=32.6
Q ss_pred EEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHHH
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQ 50 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~~ 50 (103)
++||+|-.||||--.|+.+...++. .+.-+.-..|...++++.
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~-~~~~iat~~~~~~e~~~r 45 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGL-QVLYIATAQPFDDEMAAR 45 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCC-CcEeCcCCCCChHHHHHH
Confidence 6899999999999999999998763 333444555776776553
No 141
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=90.66 E-value=0.85 Score=38.31 Aligned_cols=57 Identities=18% Similarity=0.236 Sum_probs=44.7
Q ss_pred CeEEEEEecCcCCchhHHHHHHHH-Hhcc--cceEEEecchhhHH--HHHHHcCccHHHhcC
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLE-RIGS--QHCAIIRLSAPIKS--HWAKQNGLEMDKLLG 60 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~-~l~~--~~~~iv~iS~piK~--~yA~~~glDl~~LL~ 60 (103)
+--++||+|..|+||--++-.+.. -+.. ..|..|++.+|..+ +++.+.|.|++++..
T Consensus 30 ~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~ee~~~~i~~~~~~~g~d~~~~~~ 91 (509)
T PRK09302 30 KGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVTFEESPEDIIRNVASFGWDLQKLID 91 (509)
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEEccCCHHHHHHHHHHcCCCHHHHhh
Confidence 356889999999999988876543 3322 67899999999887 566788999999864
No 142
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=90.50 E-value=0.31 Score=37.25 Aligned_cols=25 Identities=24% Similarity=0.198 Sum_probs=22.3
Q ss_pred EEEEEecCcCCchhHHHHHHHHHhc
Q psy4713 6 LILLFSGKRKSGKDFLTDYLLERIG 30 (103)
Q Consensus 6 lIiL~sGKrksGKDy~a~~l~~~l~ 30 (103)
.+|+++|..||||-.+|..|++++.
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~~ 27 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKNP 27 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHCC
Confidence 4677799999999999999999983
No 143
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=90.44 E-value=0.58 Score=37.75 Aligned_cols=39 Identities=15% Similarity=0.227 Sum_probs=32.5
Q ss_pred CCeEEEEEecCcCCchhHHHHHHHHHhcc----cceEEEecch
Q psy4713 3 QPKLILLFSGKRKSGKDFLTDYLLERIGS----QHCAIIRLSA 41 (103)
Q Consensus 3 ~pklIiL~sGKrksGKDy~a~~l~~~l~~----~~~~iv~iS~ 41 (103)
+.+.||-|+|-+||||--++..|...+.. ..+.+++..+
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~ 102 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDG 102 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEeccc
Confidence 45689999999999999999999888862 4677888776
No 144
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=90.38 E-value=0.49 Score=42.85 Aligned_cols=52 Identities=27% Similarity=0.501 Sum_probs=38.2
Q ss_pred CCeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHHHcCccHHHhcCCC
Q psy4713 3 QPKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQNGLEMDKLLGAT 62 (103)
Q Consensus 3 ~pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~~~glDl~~LL~d~ 62 (103)
.|.-.+||.|.+|+||-++|..++..++ +..+++.. .+|...| +..+|.+++
T Consensus 486 kp~~~~Lf~GP~GvGKT~lAk~LA~~l~---~~~i~id~---se~~~~~--~~~~LiG~~ 537 (758)
T PRK11034 486 KPVGSFLFAGPTGVGKTEVTVQLSKALG---IELLRFDM---SEYMERH--TVSRLIGAP 537 (758)
T ss_pred CCcceEEEECCCCCCHHHHHHHHHHHhC---CCcEEeec---hhhcccc--cHHHHcCCC
Confidence 3566899999999999999999999985 34555543 2565555 357787754
No 145
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=90.34 E-value=0.89 Score=41.79 Aligned_cols=65 Identities=18% Similarity=0.218 Sum_probs=51.4
Q ss_pred CeEEEEEecCcCCchhHHHHHHHH-Hhcc-cceEEEecchhhHHHHHHHcCccHHHhcCCCCcHHHh
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLE-RIGS-QHCAIIRLSAPIKSHWAKQNGLEMDKLLGATKYKEKY 68 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~-~l~~-~~~~iv~iS~piK~~yA~~~glDl~~LL~d~~YKE~~ 68 (103)
+--|++|.|..+|||=-++-.+.. .... ..|..+..-+++..++|+..|+|+++++-..++-..+
T Consensus 59 ~GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId~E~t~~~~~A~~lGvDl~~llv~~~~~~E~ 125 (790)
T PRK09519 59 RGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQ 125 (790)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchhHHHHHHcCCChhHeEEecCCCHHH
Confidence 456889999999999888755433 3222 6788888888888899999999999998877776554
No 146
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=90.33 E-value=0.32 Score=41.49 Aligned_cols=23 Identities=35% Similarity=0.421 Sum_probs=20.6
Q ss_pred EEEecCcCCchhHHHHHHHHHhc
Q psy4713 8 LLFSGKRKSGKDFLTDYLLERIG 30 (103)
Q Consensus 8 iL~sGKrksGKDy~a~~l~~~l~ 30 (103)
|||+|++|+||+++|..++....
T Consensus 230 vlI~GE~GtGK~~lA~aiH~~s~ 252 (520)
T PRK10820 230 LLITGDTGTGKDLLAYACHLRSP 252 (520)
T ss_pred EEEECCCCccHHHHHHHHHHhCC
Confidence 88999999999999999987644
No 147
>PRK08939 primosomal protein DnaI; Reviewed
Probab=90.32 E-value=0.84 Score=36.72 Aligned_cols=34 Identities=15% Similarity=0.304 Sum_probs=27.7
Q ss_pred EEEEecCcCCchhHHHHHHHHHhcc--cceEEEecc
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRLS 40 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~iS 40 (103)
=++++|..|+||=|++..+...+.. ..+..+..+
T Consensus 158 gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~ 193 (306)
T PRK08939 158 GLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFP 193 (306)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHH
Confidence 4789999999999999999999865 455556654
No 148
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=90.23 E-value=1.1 Score=37.63 Aligned_cols=29 Identities=28% Similarity=0.355 Sum_probs=26.8
Q ss_pred CCeEEEEEecCcCCchhHHHHHHHHHhcc
Q psy4713 3 QPKLILLFSGKRKSGKDFLTDYLLERIGS 31 (103)
Q Consensus 3 ~pklIiL~sGKrksGKDy~a~~l~~~l~~ 31 (103)
.++-|+++.|..||||--+++.|+..++.
T Consensus 76 ~~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 76 ERKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 46789999999999999999999999976
No 149
>PRK13946 shikimate kinase; Provisional
Probab=90.14 E-value=0.32 Score=35.34 Aligned_cols=26 Identities=19% Similarity=0.253 Sum_probs=23.3
Q ss_pred EEEEEecCcCCchhHHHHHHHHHhcc
Q psy4713 6 LILLFSGKRKSGKDFLTDYLLERIGS 31 (103)
Q Consensus 6 lIiL~sGKrksGKDy~a~~l~~~l~~ 31 (103)
..|+|+|-+||||.-++..|+++||-
T Consensus 11 ~~I~l~G~~GsGKsti~~~LA~~Lg~ 36 (184)
T PRK13946 11 RTVVLVGLMGAGKSTVGRRLATMLGL 36 (184)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCC
Confidence 35889999999999999999999864
No 150
>COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=90.12 E-value=0.56 Score=36.82 Aligned_cols=32 Identities=22% Similarity=0.350 Sum_probs=25.6
Q ss_pred EEEEEecCcCCchhHHHHHHHHHhccc-ceEEE
Q psy4713 6 LILLFSGKRKSGKDFLTDYLLERIGSQ-HCAII 37 (103)
Q Consensus 6 lIiL~sGKrksGKDy~a~~l~~~l~~~-~~~iv 37 (103)
..|++.|.+|||||=+-+....++... .+.++
T Consensus 6 ~lI~vvGPSGAGKDtl~~~ar~~l~~~~r~~fv 38 (192)
T COG3709 6 RLIAVVGPSGAGKDTLLDAARARLAGRPRLHFV 38 (192)
T ss_pred eEEEEECCCCCChHHHHHHHHHHhccCCceEEE
Confidence 467788999999999999999998763 34443
No 151
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=90.04 E-value=0.45 Score=40.29 Aligned_cols=53 Identities=21% Similarity=0.345 Sum_probs=40.9
Q ss_pred CCeEEEEEecCcCCchhHHHHHHHHHhcc-cceEEEecchhhHHHHHHHcCccH
Q psy4713 3 QPKLILLFSGKRKSGKDFLTDYLLERIGS-QHCAIIRLSAPIKSHWAKQNGLEM 55 (103)
Q Consensus 3 ~pklIiL~sGKrksGKDy~a~~l~~~l~~-~~~~iv~iS~piK~~yA~~~glDl 55 (103)
.|+=.|||||..||||-=--..+..-+++ ...+|+.|-|||-=-|....-|.-
T Consensus 123 ~~~GLILVTGpTGSGKSTTlAamId~iN~~~~~HIlTIEDPIE~vh~skkslI~ 176 (353)
T COG2805 123 SPRGLILVTGPTGSGKSTTLAAMIDYINKHKAKHILTIEDPIEYVHESKKSLIN 176 (353)
T ss_pred CCCceEEEeCCCCCcHHHHHHHHHHHHhccCCcceEEecCchHhhhcchHhhhh
Confidence 46668999999999998877777777777 678899999999655554433333
No 152
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=89.97 E-value=0.49 Score=32.88 Aligned_cols=31 Identities=19% Similarity=0.308 Sum_probs=25.0
Q ss_pred EEEecCcCCchhHHHHHHHHHhcc--cceEEEe
Q psy4713 8 LLFSGKRKSGKDFLTDYLLERIGS--QHCAIIR 38 (103)
Q Consensus 8 iL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~ 38 (103)
|+|+||.|+||-.++..+...+.+ .++.++.
T Consensus 2 i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id 34 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYLAEKGKPVLAID 34 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 789999999999999999998865 3344444
No 153
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=89.96 E-value=1.4 Score=34.85 Aligned_cols=35 Identities=23% Similarity=0.357 Sum_probs=29.1
Q ss_pred CCCeEEEEEecCcCCchhHHHHHHHHHhcccceEE
Q psy4713 2 TQPKLILLFSGKRKSGKDFLTDYLLERIGSQHCAI 36 (103)
Q Consensus 2 ~~pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~i 36 (103)
.++..+|-|||-+||||-=+|+.|.+.|-+.-.++
T Consensus 20 ~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~ 54 (197)
T COG0529 20 GQKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHV 54 (197)
T ss_pred CCCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeE
Confidence 45668999999999999999999999997733333
No 154
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=89.84 E-value=1.2 Score=35.34 Aligned_cols=36 Identities=17% Similarity=0.242 Sum_probs=25.4
Q ss_pred EEEEecCcCCchhHHHHHHHHHhcccceEEEecchh
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAP 42 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~p 42 (103)
.|+++|-.+|||=..|..|++.|.+....++-+|+.
T Consensus 3 Liil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~ 38 (270)
T PF08433_consen 3 LIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDD 38 (270)
T ss_dssp EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-TH
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEccc
Confidence 578999999999999999999998754445445543
No 155
>PRK06761 hypothetical protein; Provisional
Probab=89.81 E-value=0.64 Score=37.55 Aligned_cols=27 Identities=15% Similarity=0.252 Sum_probs=24.4
Q ss_pred EEEEEecCcCCchhHHHHHHHHHhccc
Q psy4713 6 LILLFSGKRKSGKDFLTDYLLERIGSQ 32 (103)
Q Consensus 6 lIiL~sGKrksGKDy~a~~l~~~l~~~ 32 (103)
.+|+|+|..||||.=++..|.+.+...
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L~~~ 30 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDILSQN 30 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCcC
Confidence 478999999999999999999999763
No 156
>PF13189 Cytidylate_kin2: Cytidylate kinase-like family; PDB: 3FDI_A.
Probab=89.77 E-value=0.35 Score=35.29 Aligned_cols=49 Identities=22% Similarity=0.329 Sum_probs=28.6
Q ss_pred EEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHHHcCccHHHhcC
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQNGLEMDKLLG 60 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~~~glDl~~LL~ 60 (103)
||-||+..|||+..++..|+++|| ... ++.-+=.+-|+++|++.+.+-.
T Consensus 1 IITIsr~~Gsgg~~Ia~~LA~~Lg---~~~--~d~~ii~~~a~~~~~~~~~~~~ 49 (179)
T PF13189_consen 1 IITISRQYGSGGREIAERLAEKLG---YPY--YDREIIEEAAKESGISEEEFEE 49 (179)
T ss_dssp EEEEEE-TTSSHHHHHHHHHHHCT-----E--E-HHHHHHCT------------
T ss_pred CEEECCCCCCChHHHHHHHHHHcC---Ccc--CCHHHHHHHHHHccCCHHHHHH
Confidence 789999999999999999999997 332 4556667778888888777633
No 157
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=89.67 E-value=0.54 Score=37.09 Aligned_cols=34 Identities=26% Similarity=0.351 Sum_probs=29.1
Q ss_pred EEEEecCcCCchhHHHHHHHHHhcccceEEEecc
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLS 40 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS 40 (103)
||.|+|.+||||--++..|...+....+.++..-
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~~~~~~vi~~D 34 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGSDLVTVICLD 34 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhCCCceEEEECc
Confidence 5789999999999999999999987667677653
No 158
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=89.65 E-value=0.82 Score=33.50 Aligned_cols=71 Identities=23% Similarity=0.331 Sum_probs=39.6
Q ss_pred CCeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHHHcCccHHHhcC--CCCcHHHhHHHHHHHHHHH
Q psy4713 3 QPKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQNGLEMDKLLG--ATKYKEKYRAEMITWSEAE 79 (103)
Q Consensus 3 ~pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~~~glDl~~LL~--d~~YKE~~R~~mi~wge~~ 79 (103)
+.+.++++-|-.||||-.+++.+...++...+.+|. .|-+|+.. -++++|+. ....-+..+++.-.|.+..
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~-~D~~r~~~-----p~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 85 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVID-ADEFRQFH-----PDYDELLKADPDEASELTQKEASRLAEKL 85 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE--GGGGGGGS-----TTHHHHHHHHCCCTHHHHHHHHHHHHHHH
T ss_pred cCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEe-hHHHHHhc-----cchhhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 456788899999999999999999998422333332 34343322 12333222 3344455666666666553
No 159
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=89.63 E-value=0.44 Score=34.07 Aligned_cols=26 Identities=19% Similarity=0.377 Sum_probs=23.6
Q ss_pred EEEEEecCcCCchhHHHHHHHHHhcc
Q psy4713 6 LILLFSGKRKSGKDFLTDYLLERIGS 31 (103)
Q Consensus 6 lIiL~sGKrksGKDy~a~~l~~~l~~ 31 (103)
.||+++|-+||||==++..|++.++.
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~ 28 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAE 28 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCC
Confidence 48999999999999999999999754
No 160
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=89.40 E-value=0.41 Score=36.32 Aligned_cols=24 Identities=29% Similarity=0.351 Sum_probs=21.6
Q ss_pred EEEecCcCCchhHHHHHHHHHhcc
Q psy4713 8 LLFSGKRKSGKDFLTDYLLERIGS 31 (103)
Q Consensus 8 iL~sGKrksGKDy~a~~l~~~l~~ 31 (103)
++|+|.+|+||..++..+...+..
T Consensus 41 ~ll~G~~G~GKt~~~~~l~~~l~~ 64 (319)
T PRK00440 41 LLFAGPPGTGKTTAALALARELYG 64 (319)
T ss_pred EEEECCCCCCHHHHHHHHHHHHcC
Confidence 599999999999999999988753
No 161
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=89.39 E-value=0.62 Score=34.66 Aligned_cols=27 Identities=30% Similarity=0.485 Sum_probs=23.6
Q ss_pred eEEEEEecCcCCchhHHHHHHHHHhcc
Q psy4713 5 KLILLFSGKRKSGKDFLTDYLLERIGS 31 (103)
Q Consensus 5 klIiL~sGKrksGKDy~a~~l~~~l~~ 31 (103)
.-+++|+|++||||=.++..+.+.+..
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~ 69 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQ 69 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCC
Confidence 337889999999999999999998864
No 162
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=89.35 E-value=0.54 Score=37.89 Aligned_cols=42 Identities=26% Similarity=0.472 Sum_probs=34.9
Q ss_pred CCeEEEEEecCcCCchhHHHHHHHHHhcc-cceEEEecchhhH
Q psy4713 3 QPKLILLFSGKRKSGKDFLTDYLLERIGS-QHCAIIRLSAPIK 44 (103)
Q Consensus 3 ~pklIiL~sGKrksGKDy~a~~l~~~l~~-~~~~iv~iS~piK 44 (103)
.|+-+|||+|..||||--....+...+.+ ...+|+.+.+|+-
T Consensus 120 ~~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E 162 (343)
T TIGR01420 120 RPRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIE 162 (343)
T ss_pred hcCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChh
Confidence 35678999999999999999988887764 3578999999954
No 163
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=89.31 E-value=1.2 Score=32.96 Aligned_cols=51 Identities=14% Similarity=0.218 Sum_probs=41.1
Q ss_pred CCeEEEEEecCcCCchhHHHHHHHHHhcc--cceEEEecchhhHHHHHHHcCc
Q psy4713 3 QPKLILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRLSAPIKSHWAKQNGL 53 (103)
Q Consensus 3 ~pklIiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~iS~piK~~yA~~~gl 53 (103)
++.-+.+++|..|+||=|+...+.+.+.. ..+.++..++....+.++..|.
T Consensus 16 ~~~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~L~~~~~~ 68 (196)
T PF13604_consen 16 SGDRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKELREKTGI 68 (196)
T ss_dssp CTCSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHHTS
T ss_pred cCCeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHHHHHhhCc
Confidence 34557889999999999999998888765 5788888888888888888664
No 164
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=89.19 E-value=0.77 Score=40.05 Aligned_cols=38 Identities=24% Similarity=0.271 Sum_probs=31.2
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhcc--cceEEEecch
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRLSA 41 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~iS~ 41 (103)
+.+||-|+|-+||||=.++..|...+.. ..+.+|+|-+
T Consensus 211 ~PlIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvISiDD 250 (460)
T PLN03046 211 PPLVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSIDD 250 (460)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhcccCCceEEEEECC
Confidence 5699999999999999999999888853 3466666654
No 165
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=89.17 E-value=0.69 Score=36.42 Aligned_cols=27 Identities=22% Similarity=0.397 Sum_probs=23.2
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhc
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIG 30 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~ 30 (103)
|.+-+||+|.+|+||-.+|..+...+.
T Consensus 57 ~~~~vll~G~pGTGKT~lA~~ia~~l~ 83 (284)
T TIGR02880 57 PTLHMSFTGNPGTGKTTVALRMAQILH 83 (284)
T ss_pred CCceEEEEcCCCCCHHHHHHHHHHHHH
Confidence 667899999999999999987777664
No 166
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=89.05 E-value=0.88 Score=39.71 Aligned_cols=58 Identities=21% Similarity=0.255 Sum_probs=42.8
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHHHcCccHHHhcCCCCc
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQNGLEMDKLLGATKY 64 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~~~glDl~~LL~d~~Y 64 (103)
+..||+|.|-+||||--++..|+.+++- ..+--+|.+++.+.....-++...|..+.|
T Consensus 254 ~p~vil~~G~~G~GKSt~a~~LA~~lg~---~~ii~tD~iR~~lr~~i~~e~~P~Lh~Sty 311 (475)
T PRK12337 254 RPLHVLIGGVSGVGKSVLASALAYRLGI---TRIVSTDAVREVLRAMVSKDLLPTLHASTF 311 (475)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHcCC---cEEeehhHHHHHHHhhcchhhccchhhchh
Confidence 4689999999999999999999999863 223347888888877666555555443333
No 167
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=89.03 E-value=0.43 Score=38.86 Aligned_cols=28 Identities=18% Similarity=0.380 Sum_probs=23.7
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhcc
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIGS 31 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~~ 31 (103)
..+-|+++|++|+||..+|..++.....
T Consensus 160 ~~~~vli~Ge~GtGK~~lA~~ih~~s~~ 187 (469)
T PRK10923 160 SSISVLINGESGTGKELVAHALHRHSPR 187 (469)
T ss_pred cCCeEEEEeCCCCcHHHHHHHHHhcCCC
Confidence 3456899999999999999999987653
No 168
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=89.02 E-value=0.65 Score=37.62 Aligned_cols=30 Identities=33% Similarity=0.547 Sum_probs=25.3
Q ss_pred CCCCeEEEEEecCcCCchhHHHHHHHHHhcc
Q psy4713 1 MTQPKLILLFSGKRKSGKDFLTDYLLERIGS 31 (103)
Q Consensus 1 ~~~pklIiL~sGKrksGKDy~a~~l~~~l~~ 31 (103)
|.+|+ ||+|+|..+|||--+|..|++.++.
T Consensus 1 ~~~~~-~i~i~GptgsGKt~la~~la~~~~~ 30 (307)
T PRK00091 1 MMKPK-VIVIVGPTASGKTALAIELAKRLNG 30 (307)
T ss_pred CCCce-EEEEECCCCcCHHHHHHHHHHhCCC
Confidence 44554 7889999999999999999999863
No 169
>PHA00729 NTP-binding motif containing protein
Probab=88.95 E-value=1.2 Score=35.15 Aligned_cols=43 Identities=16% Similarity=0.127 Sum_probs=34.5
Q ss_pred EEEEEecCcCCchhHHHHHHHHHhcc---------------cceEEEecchhhHHHHH
Q psy4713 6 LILLFSGKRKSGKDFLTDYLLERIGS---------------QHCAIIRLSAPIKSHWA 48 (103)
Q Consensus 6 lIiL~sGKrksGKDy~a~~l~~~l~~---------------~~~~iv~iS~piK~~yA 48 (103)
.-|+|+|..|+||=.+|..+..+++. ..|.++.+++.+.+--+
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~~~l~~l~~~~~~~d~~~~~~fid~~~Ll~~L~~ 75 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVFWKLNNLSTKDDAWQYVQNSYFFELPDALEKIQD 75 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhhcccccchhhHHhcCCcEEEEEHHHHHHHHHH
Confidence 46899999999999999999998751 35788888877665544
No 170
>COG3596 Predicted GTPase [General function prediction only]
Probab=88.95 E-value=0.6 Score=38.72 Aligned_cols=72 Identities=15% Similarity=0.081 Sum_probs=47.5
Q ss_pred CCCeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHHHcCccHHHhcCCCCcHHH-------hHHHHHH
Q psy4713 2 TQPKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQNGLEMDKLLGATKYKEK-------YRAEMIT 74 (103)
Q Consensus 2 ~~pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~~~glDl~~LL~d~~YKE~-------~R~~mi~ 74 (103)
..++++||++|+.|+||-=+.|.|-.........+-.=++|..+.+..-+| + .-.|||.+==|+ ||+..+.
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~-~-~l~lwDtPG~gdg~~~D~~~r~~~~d 113 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDG-E-NLVLWDTPGLGDGKDKDAEHRQLYRD 113 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccc-c-ceEEecCCCcccchhhhHHHHHHHHH
Confidence 358999999999999998877777643333333344478899988888766 2 234566543333 5555544
Q ss_pred H
Q psy4713 75 W 75 (103)
Q Consensus 75 w 75 (103)
-
T Consensus 114 ~ 114 (296)
T COG3596 114 Y 114 (296)
T ss_pred H
Confidence 3
No 171
>PRK00625 shikimate kinase; Provisional
Probab=88.88 E-value=0.85 Score=33.71 Aligned_cols=37 Identities=16% Similarity=0.188 Sum_probs=29.6
Q ss_pred EEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHH
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSH 46 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~ 46 (103)
.|+++|=+||||--++..|+++++ ...+.++.-+.+.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~---~~~id~D~~I~~~ 38 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS---LPFFDTDDLIVSN 38 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC---CCEEEhhHHHHHH
Confidence 488999999999999999999986 5566666655543
No 172
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=88.84 E-value=0.61 Score=34.39 Aligned_cols=40 Identities=18% Similarity=0.151 Sum_probs=29.6
Q ss_pred EEEEecCcCCchhHHHHHHHHHhcc--cceEEEecchhhHHH
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRLSAPIKSH 46 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~iS~piK~~ 46 (103)
=++|+|..|+||=|+|-.+...+-. ..+..++.++-+.+-
T Consensus 49 ~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l 90 (178)
T PF01695_consen 49 NLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDEL 90 (178)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHH
T ss_pred EEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccc
Confidence 4789999999999999999876654 566777777655443
No 173
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=88.73 E-value=0.38 Score=41.90 Aligned_cols=22 Identities=18% Similarity=0.433 Sum_probs=20.5
Q ss_pred EEEEecCcCCchhHHHHHHHHH
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLER 28 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~ 28 (103)
=|||+|++|+||+++|..++..
T Consensus 244 pVLI~GE~GTGKe~~A~~IH~~ 265 (538)
T PRK15424 244 AVLIQGETGTGKELAAQAIHRE 265 (538)
T ss_pred cEEEECCCCCCHHHHHHHHHHh
Confidence 4899999999999999999986
No 174
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=88.54 E-value=0.52 Score=40.81 Aligned_cols=23 Identities=17% Similarity=0.382 Sum_probs=20.7
Q ss_pred EEEEecCcCCchhHHHHHHHHHh
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERI 29 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l 29 (103)
=|||+|++|+||..+|..++..-
T Consensus 237 pVLI~GE~GTGKe~lA~~IH~~S 259 (526)
T TIGR02329 237 TVLILGESGTGKELVAQAIHQLS 259 (526)
T ss_pred cEEEECCCCcCHHHHHHHHHHhc
Confidence 48999999999999999999754
No 175
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=88.54 E-value=0.91 Score=32.37 Aligned_cols=27 Identities=15% Similarity=0.303 Sum_probs=24.9
Q ss_pred eEEEEEecCcCCchhHHHHHHHHHhcc
Q psy4713 5 KLILLFSGKRKSGKDFLTDYLLERIGS 31 (103)
Q Consensus 5 klIiL~sGKrksGKDy~a~~l~~~l~~ 31 (103)
-.+|+|.|--||||--.++.|++.|+.
T Consensus 3 g~~IvieG~~GsGKsT~~~~L~~~l~~ 29 (195)
T TIGR00041 3 GMFIVIEGIDGAGKTTQANLLKKLLQE 29 (195)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 468999999999999999999999975
No 176
>CHL00181 cbbX CbbX; Provisional
Probab=88.48 E-value=0.8 Score=36.32 Aligned_cols=27 Identities=22% Similarity=0.351 Sum_probs=23.6
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhc
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIG 30 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~ 30 (103)
|-+.+||+|.+|+||=++|..+...+.
T Consensus 58 ~~~~ill~G~pGtGKT~lAr~la~~~~ 84 (287)
T CHL00181 58 PGLHMSFTGSPGTGKTTVALKMADILY 84 (287)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 456799999999999999999988764
No 177
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=88.33 E-value=0.51 Score=34.15 Aligned_cols=24 Identities=33% Similarity=0.401 Sum_probs=21.7
Q ss_pred EEEEecCcCCchhHHHHHHHHHhc
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIG 30 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~ 30 (103)
+++|+|.+||||.=+...|...++
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~~~ 27 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQREQ 27 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhccCC
Confidence 688899999999999999988765
No 178
>PRK08181 transposase; Validated
Probab=88.24 E-value=1.3 Score=35.25 Aligned_cols=35 Identities=20% Similarity=0.157 Sum_probs=26.7
Q ss_pred EEEEecCcCCchhHHHHHHHHHhcc--cceEEEecch
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRLSA 41 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~iS~ 41 (103)
-|+|.|..|+||=+++..|...+-. ..+..++.++
T Consensus 108 nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~ 144 (269)
T PRK08181 108 NLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTD 144 (269)
T ss_pred eEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHH
Confidence 3899999999999999999877654 3455555544
No 179
>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional
Probab=88.12 E-value=2.6 Score=35.01 Aligned_cols=40 Identities=18% Similarity=0.262 Sum_probs=31.1
Q ss_pred EEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHH
Q psy4713 6 LILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAK 49 (103)
Q Consensus 6 lIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~ 49 (103)
.+|.+||.-||||-.+++.|++ +| +.++.--.-.++.|.+
T Consensus 2 ~~IgltG~igsGKStv~~~L~~-~G---~~vidaD~i~~~l~~~ 41 (395)
T PRK03333 2 LRIGLTGGIGAGKSTVAARLAE-LG---AVVVDADVLAREVVEP 41 (395)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CC---CeEEehHHHHHHHhcC
Confidence 4699999999999999999987 44 6677766555655554
No 180
>PRK06217 hypothetical protein; Validated
Probab=88.12 E-value=0.56 Score=33.85 Aligned_cols=25 Identities=28% Similarity=0.337 Sum_probs=22.9
Q ss_pred EEEEecCcCCchhHHHHHHHHHhcc
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIGS 31 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~~ 31 (103)
.|+|+|-+||||--++..|.+.++-
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~ 27 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDI 27 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCC
Confidence 3899999999999999999999863
No 181
>KOG2170|consensus
Probab=88.10 E-value=0.61 Score=39.42 Aligned_cols=64 Identities=20% Similarity=0.380 Sum_probs=41.8
Q ss_pred CCeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHHHcCccHHHhcCCCCcHHHhHHHHHHHHH
Q psy4713 3 QPKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQNGLEMDKLLGATKYKEKYRAEMITWSE 77 (103)
Q Consensus 3 ~pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~~~glDl~~LL~d~~YKE~~R~~mi~wge 77 (103)
...|++=|-|-+|.||.|+++++++.+-.. .+-.|.=.+|-+.+. .-+..|=|.||.++-.|-.
T Consensus 108 ~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~-----Gl~S~~V~~fvat~h------FP~~~~ie~Yk~eL~~~v~ 171 (344)
T KOG2170|consen 108 RKPLVLSFHGWTGTGKNYVAEIIAENLYRG-----GLRSPFVHHFVATLH------FPHASKIEDYKEELKNRVR 171 (344)
T ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHHhc-----cccchhHHHhhhhcc------CCChHHHHHHHHHHHHHHH
Confidence 467999999999999999999999987431 122233344443222 1234556677777776643
No 182
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=88.07 E-value=0.57 Score=40.90 Aligned_cols=25 Identities=20% Similarity=0.399 Sum_probs=21.8
Q ss_pred EEEEEecCcCCchhHHHHHHHHHhc
Q psy4713 6 LILLFSGKRKSGKDFLTDYLLERIG 30 (103)
Q Consensus 6 lIiL~sGKrksGKDy~a~~l~~~l~ 30 (103)
.=|||+|++|+||.++|..+.....
T Consensus 400 ~pVLI~GE~GTGK~~lA~~ih~~s~ 424 (686)
T PRK15429 400 STVLILGETGTGKELIARAIHNLSG 424 (686)
T ss_pred CCEEEECCCCcCHHHHHHHHHHhcC
Confidence 3489999999999999999998654
No 183
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=88.03 E-value=0.92 Score=34.93 Aligned_cols=27 Identities=26% Similarity=0.370 Sum_probs=23.9
Q ss_pred eEEEEEecCcCCchhHHHHHHHHHhcc
Q psy4713 5 KLILLFSGKRKSGKDFLTDYLLERIGS 31 (103)
Q Consensus 5 klIiL~sGKrksGKDy~a~~l~~~l~~ 31 (103)
+-++|++|.+|+||-.++..+...++.
T Consensus 43 ~~~lll~G~~G~GKT~la~~l~~~~~~ 69 (316)
T PHA02544 43 PNMLLHSPSPGTGKTTVAKALCNEVGA 69 (316)
T ss_pred CeEEEeeCcCCCCHHHHHHHHHHHhCc
Confidence 458899999999999999999988764
No 184
>PF12846 AAA_10: AAA-like domain
Probab=87.93 E-value=0.69 Score=34.01 Aligned_cols=40 Identities=28% Similarity=0.382 Sum_probs=27.7
Q ss_pred EEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHH
Q psy4713 8 LLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAK 49 (103)
Q Consensus 8 iL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~ 49 (103)
++|.|++||||-+.+..+...+-.....++-| ||- .+|+.
T Consensus 4 ~~i~G~tGsGKT~~~~~l~~~~~~~g~~~~i~-D~~-g~~~~ 43 (304)
T PF12846_consen 4 TLILGKTGSGKTTLLKNLLEQLIRRGPRVVIF-DPK-GDYSP 43 (304)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHcCCCEEEE-cCC-chHHH
Confidence 47889999999999999987776543444333 443 44444
No 185
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=87.89 E-value=3.8 Score=30.16 Aligned_cols=65 Identities=17% Similarity=0.304 Sum_probs=45.9
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhc---ccceEEEecchhhH----HHHHHHcCccHHHhcCCCCcHHHh
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIG---SQHCAIIRLSAPIK----SHWAKQNGLEMDKLLGATKYKEKY 68 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~---~~~~~iv~iS~piK----~~yA~~~glDl~~LL~d~~YKE~~ 68 (103)
|--+++|+|.+|+||=-++..+...+. ...+..+++-.|-. +..|...|.|+.++.......|.+
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 83 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEMSKEQLLQRLLASESGISLSKLRTGSLSDEDW 83 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCHHHHHHHHHHHhcCCCHHHHhcCCCCHHHH
Confidence 455899999999999887776655543 25777788776655 445577899999877655554433
No 186
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=87.79 E-value=0.74 Score=36.03 Aligned_cols=41 Identities=27% Similarity=0.410 Sum_probs=33.5
Q ss_pred CCeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhh
Q psy4713 3 QPKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPI 43 (103)
Q Consensus 3 ~pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~pi 43 (103)
.++=+|+|+|..||||==....+.+.+......|+.|-+|.
T Consensus 78 ~~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~ 118 (264)
T cd01129 78 KPHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPV 118 (264)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCc
Confidence 45668999999999999888888777765566788888886
No 187
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=87.76 E-value=0.74 Score=38.26 Aligned_cols=36 Identities=19% Similarity=0.285 Sum_probs=29.8
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchh
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAP 42 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~p 42 (103)
|...+||.|..|+||.++|..+...+ ...++++++|
T Consensus 275 ~~~giLl~GpPGtGKT~lAkava~~~---~~~fi~v~~~ 310 (494)
T COG0464 275 PPKGVLLYGPPGTGKTLLAKAVALES---RSRFISVKGS 310 (494)
T ss_pred CCCeeEEECCCCCCHHHHHHHHHhhC---CCeEEEeeCH
Confidence 55589999999999999999999865 4666777666
No 188
>PRK10865 protein disaggregation chaperone; Provisional
Probab=87.45 E-value=0.79 Score=41.73 Aligned_cols=37 Identities=27% Similarity=0.301 Sum_probs=28.0
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecc
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLS 40 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS 40 (103)
|.-++||.|.+|+||-++|..|++.+....-..+++.
T Consensus 597 p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id 633 (857)
T PRK10865 597 PIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRID 633 (857)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEE
Confidence 4468999999999999999999998754322344443
No 189
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=87.44 E-value=2 Score=36.29 Aligned_cols=59 Identities=17% Similarity=0.264 Sum_probs=44.6
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhcc--cceEEEecchhhHHH--HHHHcCccHHHhcCCC
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRLSAPIKSH--WAKQNGLEMDKLLGAT 62 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~iS~piK~~--yA~~~glDl~~LL~d~ 62 (103)
|--++||+|.+|+||-=++-......-. ..|..+++-++.-+. .|+..|+|++++..++
T Consensus 262 ~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg~~~~~~~~~g 324 (484)
T TIGR02655 262 KDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWGIDFEEMEQQG 324 (484)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcCCChHHHhhCC
Confidence 5568999999999999877766665422 578899998886654 4567789999875554
No 190
>PRK00889 adenylylsulfate kinase; Provisional
Probab=87.40 E-value=1.3 Score=31.33 Aligned_cols=35 Identities=17% Similarity=0.354 Sum_probs=27.2
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhccc--ceEEEe
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIGSQ--HCAIIR 38 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~~~--~~~iv~ 38 (103)
+--||+|+|-+||||--++..|...+... .+.++.
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id 39 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLD 39 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEc
Confidence 34488899999999999999999998642 344443
No 191
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=87.39 E-value=0.28 Score=35.54 Aligned_cols=58 Identities=16% Similarity=0.273 Sum_probs=43.9
Q ss_pred CCeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHH----HcCccHHHhcCC
Q psy4713 3 QPKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAK----QNGLEMDKLLGA 61 (103)
Q Consensus 3 ~pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~----~~glDl~~LL~d 61 (103)
.|.-||+++|..||||=-++..+.+.++- ...|-|-+-.+-.+|.. -+-.|+-||-+.
T Consensus 20 ~~~~~i~l~G~lGaGKTtl~~~l~~~lg~-~~~v~SPTf~lv~~Y~~~~~~l~H~DlYRl~~~ 81 (133)
T TIGR00150 20 DFGTVVLLKGDLGAGKTTLVQGLLQGLGI-QGNVTSPTFTLVNEYNEGNLMVYHFDLYRLADP 81 (133)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHcCC-CCcccCCCeeeeeecccCCCcEEEechhhcCCh
Confidence 45678999999999999999999999874 23466667777778862 345688887543
No 192
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=87.38 E-value=1.8 Score=34.08 Aligned_cols=53 Identities=19% Similarity=0.208 Sum_probs=37.9
Q ss_pred eEEEEEecCcCCchhHHHHHHHHHhc----ccceEEEecch----h--hHHHHHHHcCccHHH
Q psy4713 5 KLILLFSGKRKSGKDFLTDYLLERIG----SQHCAIIRLSA----P--IKSHWAKQNGLEMDK 57 (103)
Q Consensus 5 klIiL~sGKrksGKDy~a~~l~~~l~----~~~~~iv~iS~----p--iK~~yA~~~glDl~~ 57 (103)
.-||+|.|..||||=..+..|...+. ..++.+|.+-. + .-+.|+...|+++..
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~ 256 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVKV 256 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCceec
Confidence 34788889999999999999988773 35778887642 1 224577777776643
No 193
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=87.35 E-value=0.78 Score=34.99 Aligned_cols=26 Identities=23% Similarity=0.519 Sum_probs=24.2
Q ss_pred eEEEEEecCcCCchhHHHHHHHHHhc
Q psy4713 5 KLILLFSGKRKSGKDFLTDYLLERIG 30 (103)
Q Consensus 5 klIiL~sGKrksGKDy~a~~l~~~l~ 30 (103)
+.+|.|+|.+||||--++..|+..++
T Consensus 2 ~~~i~i~G~~GsGKst~~~~la~~~~ 27 (217)
T TIGR00017 2 AMIIAIDGPSGAGKSTVAKAVAEKLG 27 (217)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999999987
No 194
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=87.35 E-value=1.9 Score=38.34 Aligned_cols=61 Identities=25% Similarity=0.391 Sum_probs=45.9
Q ss_pred EEEecCcCCchhHHHHHHHHHhccc-------ceEEEecchhhHHHHHHHcCccHHHhcCCCCcHHHhHHHHHHHHHHHh
Q psy4713 8 LLFSGKRKSGKDFLTDYLLERIGSQ-------HCAIIRLSAPIKSHWAKQNGLEMDKLLGATKYKEKYRAEMITWSEAER 80 (103)
Q Consensus 8 iL~sGKrksGKDy~a~~l~~~l~~~-------~~~iv~iS~piK~~yA~~~glDl~~LL~d~~YKE~~R~~mi~wge~~R 80 (103)
+|+.|++|+||--+++.++.++.+. .+.++++ |+..|+.-..|..++...+-.++++-+
T Consensus 206 ~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~--------------~~~~l~a~~~~~g~~e~~l~~i~~~~~ 271 (731)
T TIGR02639 206 PLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSL--------------DMGSLLAGTKYRGDFEERLKAVVSEIE 271 (731)
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEe--------------cHHHHhhhccccchHHHHHHHHHHHHh
Confidence 4678999999999999999998541 4566665 466777666677777788888887765
Q ss_pred cc
Q psy4713 81 RK 82 (103)
Q Consensus 81 ~~ 82 (103)
+.
T Consensus 272 ~~ 273 (731)
T TIGR02639 272 KE 273 (731)
T ss_pred cc
Confidence 43
No 195
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=87.31 E-value=1.2 Score=36.70 Aligned_cols=61 Identities=25% Similarity=0.371 Sum_probs=43.0
Q ss_pred EEEEecCcCCchhHHHHHHHHHhcc--cceEEEecchhhHHHHHHHcCccHHHhcCCCC-cHHH
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRLSAPIKSHWAKQNGLEMDKLLGATK-YKEK 67 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~iS~piK~~yA~~~glDl~~LL~d~~-YKE~ 67 (103)
|+-|.|..+|||=-++-.....+.. ..|..|---+.+=..||+..|.|+++|+-.++ +-|+
T Consensus 55 ivEi~G~~ssGKttLaL~~ia~~q~~g~~~a~ID~e~~ld~~~a~~lGvdl~rllv~~P~~~E~ 118 (322)
T PF00154_consen 55 IVEIYGPESSGKTTLALHAIAEAQKQGGICAFIDAEHALDPEYAESLGVDLDRLLVVQPDTGEQ 118 (322)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT-EEEEEESSS---HHHHHHTT--GGGEEEEE-SSHHH
T ss_pred eEEEeCCCCCchhhhHHHHHHhhhcccceeEEecCcccchhhHHHhcCccccceEEecCCcHHH
Confidence 6778899999998887777666543 56777777778888999999999999998754 4453
No 196
>PRK07952 DNA replication protein DnaC; Validated
Probab=87.30 E-value=0.96 Score=35.48 Aligned_cols=35 Identities=26% Similarity=0.429 Sum_probs=28.2
Q ss_pred EEEEecCcCCchhHHHHHHHHHhcc--cceEEEecch
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRLSA 41 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~iS~ 41 (103)
-++|+|+.|+||=+++-.+...+.. ..+.+++.++
T Consensus 101 ~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~ 137 (244)
T PRK07952 101 SFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVAD 137 (244)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHH
Confidence 5799999999999999999998865 4555555544
No 197
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=87.24 E-value=1.5 Score=32.69 Aligned_cols=39 Identities=23% Similarity=0.246 Sum_probs=28.3
Q ss_pred EEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHH
Q psy4713 6 LILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWA 48 (103)
Q Consensus 6 lIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA 48 (103)
.+|-+||..||||-.++..|.. +| +.++.-..-.++.|.
T Consensus 2 ~~igitG~igsGKst~~~~l~~-~g---~~vid~D~i~~~~~~ 40 (200)
T PRK14734 2 LRIGLTGGIGSGKSTVADLLSS-EG---FLIVDADQVARDIVE 40 (200)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CC---CeEEeCcHHHHHHHh
Confidence 4799999999999999999987 44 455555444444443
No 198
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=87.24 E-value=0.6 Score=40.40 Aligned_cols=42 Identities=21% Similarity=0.360 Sum_probs=33.7
Q ss_pred CCeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhH
Q psy4713 3 QPKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIK 44 (103)
Q Consensus 3 ~pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK 44 (103)
.|+=+|||||..||||==....+.+.+......|+.|-+|+-
T Consensus 314 ~~~Glilv~G~tGSGKTTtl~a~l~~~~~~~~~i~tiEdpvE 355 (564)
T TIGR02538 314 KPQGMVLVTGPTGSGKTVSLYTALNILNTEEVNISTAEDPVE 355 (564)
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHHhhCCCCceEEEecCCce
Confidence 467799999999999986665566666656678999999983
No 199
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=87.19 E-value=0.99 Score=40.85 Aligned_cols=37 Identities=30% Similarity=0.353 Sum_probs=28.6
Q ss_pred CCeEEEEEecCcCCchhHHHHHHHHHhcccceEEEec
Q psy4713 3 QPKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRL 39 (103)
Q Consensus 3 ~pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~i 39 (103)
.|.-.+||.|.+|+||-++|..|++.+....-.+++|
T Consensus 593 ~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~ 629 (852)
T TIGR03346 593 RPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRI 629 (852)
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEE
Confidence 3667899999999999999999999885433333333
No 200
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=87.11 E-value=1.1 Score=32.99 Aligned_cols=26 Identities=27% Similarity=0.524 Sum_probs=16.3
Q ss_pred EEEEEecCcCCchhHHHHH--HHHHhcc
Q psy4713 6 LILLFSGKRKSGKDFLTDY--LLERIGS 31 (103)
Q Consensus 6 lIiL~sGKrksGKDy~a~~--l~~~l~~ 31 (103)
.|.+++|+.||||-|.|-. +...+.+
T Consensus 1 mI~~~~G~pGsGKS~~av~~~i~~~l~~ 28 (193)
T PF05707_consen 1 MIYLITGKPGSGKSYYAVSYVIIPALKK 28 (193)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHH-GGGS
T ss_pred CEEEEEcCCCCcHhHHHHHHHHHHHHhC
Confidence 3899999999999997643 4444443
No 201
>KOG3347|consensus
Probab=87.11 E-value=0.91 Score=35.26 Aligned_cols=35 Identities=31% Similarity=0.519 Sum_probs=29.3
Q ss_pred EEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHH
Q psy4713 8 LLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKS 45 (103)
Q Consensus 8 iL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~ 45 (103)
|||||-.|+||-++++.+++.++ ..=+-||+-.|+
T Consensus 10 ILvtGTPG~GKstl~~~lae~~~---~~~i~isd~vkE 44 (176)
T KOG3347|consen 10 ILVTGTPGTGKSTLAERLAEKTG---LEYIEISDLVKE 44 (176)
T ss_pred EEEeCCCCCCchhHHHHHHHHhC---CceEehhhHHhh
Confidence 68999999999999999999875 445567887765
No 202
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=87.09 E-value=1.3 Score=32.76 Aligned_cols=42 Identities=24% Similarity=0.411 Sum_probs=31.7
Q ss_pred EEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHH
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAK 49 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~ 49 (103)
|+||+|..||||--.|+.+....+ .++..+..+.|.=.++++
T Consensus 1 ~~li~G~~~sGKS~~a~~~~~~~~-~~~~y~at~~~~d~em~~ 42 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAELG-GPVTYIATAEAFDDEMAE 42 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcC-CCeEEEEccCcCCHHHHH
Confidence 589999999999999999987744 456666666666444444
No 203
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=87.05 E-value=0.93 Score=32.87 Aligned_cols=51 Identities=14% Similarity=0.310 Sum_probs=35.0
Q ss_pred CCCCeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHHHcCccHHHhc
Q psy4713 1 MTQPKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQNGLEMDKLL 59 (103)
Q Consensus 1 ~~~pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~~~glDl~~LL 59 (103)
|.+++ .|+|.|-+||||--++..|...++ ..++.....+.+. +|.++.+..
T Consensus 1 ~~~~~-~I~liG~~GaGKStl~~~La~~l~---~~~vd~D~~i~~~----~g~~i~~~~ 51 (172)
T PRK05057 1 MAEKR-NIFLVGPMGAGKSTIGRQLAQQLN---MEFYDSDQEIEKR----TGADIGWVF 51 (172)
T ss_pred CCCCC-EEEEECCCCcCHHHHHHHHHHHcC---CcEEECCchHHHH----hCcCHhHHH
Confidence 44544 477889999999999999999975 4455555544433 355555543
No 204
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=87.02 E-value=1 Score=36.73 Aligned_cols=72 Identities=14% Similarity=0.093 Sum_probs=47.3
Q ss_pred CCCCeEEEEEecCcCCchhHHHHHHHHHhcc----cceEE-----EecchhhHHHHHH--HcCcc---HHHhcCCCCcHH
Q psy4713 1 MTQPKLILLFSGKRKSGKDFLTDYLLERIGS----QHCAI-----IRLSAPIKSHWAK--QNGLE---MDKLLGATKYKE 66 (103)
Q Consensus 1 ~~~pklIiL~sGKrksGKDy~a~~l~~~l~~----~~~~i-----v~iS~piK~~yA~--~~glD---l~~LL~d~~YKE 66 (103)
|..++ ||+|+|..+|||--+|-.|+++.++ +...| |.-.-|++++-+. .|.+| .++=.+.+.|.+
T Consensus 1 ~~~~~-ii~I~GpTasGKS~LAl~LA~~~~eIIsaDS~QvYr~ldIgTaKpt~eE~~~i~Hhlid~~~p~e~~sv~~f~~ 79 (300)
T PRK14729 1 MKENK-IVFIFGPTAVGKSNILFHFPKGKAEIINVDSIQVYKEFDIASCKPSKELRKHIKHHLVDFLEPIKEYNLGIFYK 79 (300)
T ss_pred CCCCc-EEEEECCCccCHHHHHHHHHHhCCcEEeccHHHHHCCCceecCCCCHHHHcCCCeeeeeccCCCCceeHHHHHH
Confidence 66777 7899999999999999999999543 11111 3456677777653 45544 334444556666
Q ss_pred HhHHHHH
Q psy4713 67 KYRAEMI 73 (103)
Q Consensus 67 ~~R~~mi 73 (103)
.-+..+-
T Consensus 80 ~a~~~i~ 86 (300)
T PRK14729 80 EALKIIK 86 (300)
T ss_pred HHHHHHH
Confidence 6655554
No 205
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=86.91 E-value=0.56 Score=40.64 Aligned_cols=24 Identities=17% Similarity=0.383 Sum_probs=21.3
Q ss_pred EEEEecCcCCchhHHHHHHHHHhc
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIG 30 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~ 30 (103)
=|||+|++|+||.-+|..++..-.
T Consensus 166 ~VLI~GESGtGKElvAr~IH~~S~ 189 (464)
T COG2204 166 SVLITGESGTGKELVARAIHQASP 189 (464)
T ss_pred CEEEECCCCCcHHHHHHHHHhhCc
Confidence 389999999999999999998754
No 206
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=86.88 E-value=1.2 Score=32.24 Aligned_cols=38 Identities=18% Similarity=0.177 Sum_probs=31.0
Q ss_pred CCCCeEEEEEecCcCCchhHHHHHHHHHhcc--cceEEEe
Q psy4713 1 MTQPKLILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIR 38 (103)
Q Consensus 1 ~~~pklIiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~ 38 (103)
+.++|.|.+.|+|-|+||=.+|-.|+..+.. .++.+|-
T Consensus 14 ~~~~kvI~v~s~kgG~GKTt~a~~LA~~la~~G~rVllID 53 (204)
T TIGR01007 14 GAEIKVLLITSVKPGEGKSTTSANIAVAFAQAGYKTLLID 53 (204)
T ss_pred cCCCcEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEe
Confidence 3568999999999999999999999998876 3455543
No 207
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=86.87 E-value=0.67 Score=38.50 Aligned_cols=24 Identities=21% Similarity=0.387 Sum_probs=21.7
Q ss_pred EEEecCcCCchhHHHHHHHHHhcc
Q psy4713 8 LLFSGKRKSGKDFLTDYLLERIGS 31 (103)
Q Consensus 8 iL~sGKrksGKDy~a~~l~~~l~~ 31 (103)
|||+|++|+||-+++..+...+..
T Consensus 41 vli~G~~GtGKs~~ar~~~~~l~~ 64 (350)
T CHL00081 41 VMIMGDRGTGKSTTIRALVDLLPE 64 (350)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHhh
Confidence 779999999999999999888754
No 208
>PRK05642 DNA replication initiation factor; Validated
Probab=86.85 E-value=1 Score=34.34 Aligned_cols=36 Identities=17% Similarity=0.259 Sum_probs=26.6
Q ss_pred EEEEEecCcCCchhHHHHHHHHHhcc--cceEEEecch
Q psy4713 6 LILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRLSA 41 (103)
Q Consensus 6 lIiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~iS~ 41 (103)
.-+++.|++|+||=+++..|...+.. ..|..++..+
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~ 83 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAE 83 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHH
Confidence 45789999999999999999877653 3444454433
No 209
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=86.55 E-value=2.2 Score=34.21 Aligned_cols=47 Identities=19% Similarity=0.334 Sum_probs=38.3
Q ss_pred eEEEEEecCcCCchhHHHHHHHHHh--cc--cceEEEecchhhHHHHHHHc
Q psy4713 5 KLILLFSGKRKSGKDFLTDYLLERI--GS--QHCAIIRLSAPIKSHWAKQN 51 (103)
Q Consensus 5 klIiL~sGKrksGKDy~a~~l~~~l--~~--~~~~iv~iS~piK~~yA~~~ 51 (103)
|-|++|+|-.||||=.++-.+...+ .. ..+..+.-+.|+.....+..
T Consensus 1 K~v~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n~~l~~~l~~~l 51 (352)
T PF09848_consen 1 KQVILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCGNHPLRNKLREQL 51 (352)
T ss_pred CeEEEEEecCCcCHHHHHHHHHHHhhccccCCceEEEEecchHHHHHHHHH
Confidence 4689999999999999999999998 32 67778888888877655533
No 210
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=86.49 E-value=1.2 Score=32.30 Aligned_cols=33 Identities=27% Similarity=0.443 Sum_probs=27.2
Q ss_pred EEEEecCcCCchhHHHHHHHHHhcc--cceEEEec
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRL 39 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~i 39 (103)
||.|+|.++|||=-++..|...+.. .++.++.-
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~~G~~V~viK~ 35 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKARGYRVATIKH 35 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEec
Confidence 6889999999999999999998865 46666653
No 211
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=86.45 E-value=0.78 Score=39.51 Aligned_cols=23 Identities=22% Similarity=0.413 Sum_probs=21.0
Q ss_pred EEEecCcCCchhHHHHHHHHHhc
Q psy4713 8 LLFSGKRKSGKDFLTDYLLERIG 30 (103)
Q Consensus 8 iL~sGKrksGKDy~a~~l~~~l~ 30 (103)
|||+|++|+||+.+|..++....
T Consensus 351 vli~Ge~GtGK~~~A~~ih~~s~ 373 (638)
T PRK11388 351 VLLCGEEGVGKALLAQAIHNESE 373 (638)
T ss_pred EEEECCCCcCHHHHHHHHHHhCC
Confidence 79999999999999999998754
No 212
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=86.43 E-value=1.3 Score=34.62 Aligned_cols=36 Identities=17% Similarity=0.151 Sum_probs=29.0
Q ss_pred EEEecCcCCchhHHHHHHHHHhcc--cceEEEecchhh
Q psy4713 8 LLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRLSAPI 43 (103)
Q Consensus 8 iL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~iS~pi 43 (103)
++|+|+.|+||-|+|-.+...+.. ..+..+.+++=+
T Consensus 108 l~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~ 145 (254)
T COG1484 108 LVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLL 145 (254)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHH
Confidence 689999999999999999999875 456666666543
No 213
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=86.42 E-value=2.7 Score=29.38 Aligned_cols=38 Identities=18% Similarity=0.384 Sum_probs=25.1
Q ss_pred EEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHHHcC
Q psy4713 8 LLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQNG 52 (103)
Q Consensus 8 iL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~~~g 52 (103)
|+|||=.++||--+++.|+++ .+.+| .++.+. |.+.++
T Consensus 2 I~i~G~~stGKTTL~~~L~~~----g~~~v--~E~ar~-~~~~~~ 39 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR----GYPVV--PEYARE-IIEEGG 39 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH----T-EEE----TTHH-HHHHSS
T ss_pred EEEECCCCCCHHHHHHHHHHc----CCeEE--eecHHH-HHHHhc
Confidence 789999999999999999998 34444 555554 555454
No 214
>TIGR03708 poly_P_AMP_trns polyphosphate:AMP phosphotransferase. Members of this protein family contain a domain duplication. The characterized member from Acinetobacter johnsonii is polyphosphate:AMP phosphotransferase (PAP), which can transfer the terminal phosphate from poly(P) to AMP, yielding ADP. In the opposite direction, this enzyme can synthesize poly(P). Each domain of this protein family is homologous to polyphosphate kinase, an enzyme that can run in the forward direction to extend a polyphosphate chain with a new terminal phosphate from ATP, or in reverse to make ATP (or GTP) from ADP (or GDP).
Probab=86.31 E-value=1.3 Score=38.59 Aligned_cols=47 Identities=21% Similarity=0.386 Sum_probs=43.2
Q ss_pred CCeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHH
Q psy4713 3 QPKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAK 49 (103)
Q Consensus 3 ~pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~ 49 (103)
+-++||+|-|=-.||||-+...+.+.+...-++|+++..|+-+|-+.
T Consensus 297 ~~~vlivfeG~DaAGKgg~I~rl~~~ldPrg~~v~~~~~Pt~~E~~~ 343 (493)
T TIGR03708 297 KRSLVLVFEGWDAAGKGGAIRRVTEALDARQYRVVPIAAPTDEEKAQ 343 (493)
T ss_pred CCCEEEEEEcccCCCCcHHHHHHHhhcCCCeeEEEeCCCcCHHHHcC
Confidence 45799999999999999999999999999999999999999988654
No 215
>PRK13948 shikimate kinase; Provisional
Probab=86.09 E-value=1.8 Score=32.32 Aligned_cols=52 Identities=15% Similarity=0.183 Sum_probs=36.4
Q ss_pred CCCCeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHHHcCccHHHhc
Q psy4713 1 MTQPKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQNGLEMDKLL 59 (103)
Q Consensus 1 ~~~pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~~~glDl~~LL 59 (103)
|+.|+-.|+++|=+||||=-++..|+++++ ..+|..-.-+++. .|..+.++.
T Consensus 6 ~~~~~~~I~LiG~~GsGKSTvg~~La~~lg---~~~iD~D~~ie~~----~g~si~~if 57 (182)
T PRK13948 6 IERPVTWVALAGFMGTGKSRIGWELSRALM---LHFIDTDRYIERV----TGKSIPEIF 57 (182)
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHHHcC---CCEEECCHHHHHH----HhCCHHHHH
Confidence 456667777899999999999999999986 4455555444443 344555544
No 216
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=86.02 E-value=0.75 Score=40.22 Aligned_cols=25 Identities=28% Similarity=0.444 Sum_probs=22.1
Q ss_pred EEEEecCcCCchhHHHHHHHHHhcc
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIGS 31 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~~ 31 (103)
.|+|||++||||-..+..+..-|..
T Consensus 87 ~IiisGeSGsGKTe~~k~il~~L~~ 111 (689)
T PF00063_consen 87 SIIISGESGSGKTETSKLILRYLAS 111 (689)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred ceeeccccccccccchHHHHHHHhh
Confidence 5889999999999999998888754
No 217
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=85.95 E-value=0.71 Score=30.95 Aligned_cols=55 Identities=13% Similarity=0.067 Sum_probs=36.1
Q ss_pred EEEecCcCCchhHHHHHHHHHhcc-------cceEEEecchhhHHHHHHHcCccHHHhcCCC
Q psy4713 8 LLFSGKRKSGKDFLTDYLLERIGS-------QHCAIIRLSAPIKSHWAKQNGLEMDKLLGAT 62 (103)
Q Consensus 8 iL~sGKrksGKDy~a~~l~~~l~~-------~~~~iv~iS~piK~~yA~~~glDl~~LL~d~ 62 (103)
|.|.|.+|+||=.++..|.+.+.+ ..+....-.+..-..|..+.-+-+|++-.+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~~~~~~~~vy~~~~~~~~w~gY~~q~vvi~DD~~~~~ 62 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHIGEPTKDSVYTRNPGDKFWDGYQGQPVVIIDDFGQDN 62 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHhccCCCCcEEeCCCccchhhccCCCcEEEEeecCccc
Confidence 578999999999999998888764 2222334444555556555555555555554
No 218
>PRK10436 hypothetical protein; Provisional
Probab=85.94 E-value=0.8 Score=39.17 Aligned_cols=42 Identities=24% Similarity=0.422 Sum_probs=33.8
Q ss_pred CCeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhH
Q psy4713 3 QPKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIK 44 (103)
Q Consensus 3 ~pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK 44 (103)
.|+=+|||||..||||==..-.+.+.+......|+.|-+|+-
T Consensus 216 ~~~GliLvtGpTGSGKTTtL~a~l~~~~~~~~~i~TiEDPvE 257 (462)
T PRK10436 216 QPQGLILVTGPTGSGKTVTLYSALQTLNTAQINICSVEDPVE 257 (462)
T ss_pred hcCCeEEEECCCCCChHHHHHHHHHhhCCCCCEEEEecCCcc
Confidence 467799999999999987665555666656678999999984
No 219
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=85.88 E-value=1 Score=36.96 Aligned_cols=28 Identities=21% Similarity=0.344 Sum_probs=23.8
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhcc
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIGS 31 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~~ 31 (103)
|..-||+.|.+|+||-.+|..+++.++.
T Consensus 164 ~p~gvLL~GppGtGKT~lAkaia~~~~~ 191 (389)
T PRK03992 164 PPKGVLLYGPPGTGKTLLAKAVAHETNA 191 (389)
T ss_pred CCCceEEECCCCCChHHHHHHHHHHhCC
Confidence 3445788999999999999999998863
No 220
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=85.77 E-value=1.1 Score=36.48 Aligned_cols=36 Identities=19% Similarity=0.200 Sum_probs=28.0
Q ss_pred EEEEEecCcCCchhHHHHHHHHHhccc--ceEEEecch
Q psy4713 6 LILLFSGKRKSGKDFLTDYLLERIGSQ--HCAIIRLSA 41 (103)
Q Consensus 6 lIiL~sGKrksGKDy~a~~l~~~l~~~--~~~iv~iS~ 41 (103)
..++|+|.+|+||=+++..+...+.+. ...++-++.
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~ 174 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSS 174 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEH
Confidence 357899999999999999999888642 455655554
No 221
>PRK06921 hypothetical protein; Provisional
Probab=85.76 E-value=1.3 Score=34.83 Aligned_cols=26 Identities=19% Similarity=0.171 Sum_probs=22.9
Q ss_pred EEEEEecCcCCchhHHHHHHHHHhcc
Q psy4713 6 LILLFSGKRKSGKDFLTDYLLERIGS 31 (103)
Q Consensus 6 lIiL~sGKrksGKDy~a~~l~~~l~~ 31 (103)
--++|+|..|+||=+++..+...+.+
T Consensus 118 ~~l~l~G~~G~GKThLa~aia~~l~~ 143 (266)
T PRK06921 118 NSIALLGQPGSGKTHLLTAAANELMR 143 (266)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHhh
Confidence 45789999999999999999998764
No 222
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=85.54 E-value=1.3 Score=31.24 Aligned_cols=34 Identities=15% Similarity=0.227 Sum_probs=26.6
Q ss_pred EEEEEecCcCCchhHHHHHHHHHhcc--cceEEEec
Q psy4713 6 LILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRL 39 (103)
Q Consensus 6 lIiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~i 39 (103)
.|++|+|+.||||-=++-.+...+.+ .++.++..
T Consensus 1 ~~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~ 36 (173)
T cd03115 1 TVILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAA 36 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEc
Confidence 37899999999999999998888765 34555543
No 223
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=85.41 E-value=1.3 Score=34.13 Aligned_cols=32 Identities=19% Similarity=0.397 Sum_probs=26.8
Q ss_pred EEEEecCcCCchhHHHHHHHHHhcc--cceEEEe
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIR 38 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~ 38 (103)
|++|+||-|+||=.++-.+...+.+ .++.+|+
T Consensus 2 ~~~~~gkgG~GKtt~a~~la~~~a~~g~~vLlvd 35 (254)
T cd00550 2 YIFFGGKGGVGKTTISAATAVRLAEQGKKVLLVS 35 (254)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHCCCCceEEe
Confidence 7899999999999999999988866 4555554
No 224
>PRK07261 topology modulation protein; Provisional
Probab=85.40 E-value=1 Score=32.69 Aligned_cols=24 Identities=25% Similarity=0.286 Sum_probs=21.7
Q ss_pred EEEecCcCCchhHHHHHHHHHhcc
Q psy4713 8 LLFSGKRKSGKDFLTDYLLERIGS 31 (103)
Q Consensus 8 iL~sGKrksGKDy~a~~l~~~l~~ 31 (103)
|+|.|.+||||--++..|...++-
T Consensus 3 i~i~G~~GsGKSTla~~l~~~~~~ 26 (171)
T PRK07261 3 IAIIGYSGSGKSTLARKLSQHYNC 26 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCC
Confidence 789999999999999999988753
No 225
>PRK08084 DNA replication initiation factor; Provisional
Probab=85.29 E-value=1.3 Score=33.64 Aligned_cols=35 Identities=9% Similarity=0.219 Sum_probs=26.7
Q ss_pred EEEEecCcCCchhHHHHHHHHHhcc--cceEEEecch
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRLSA 41 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~iS~ 41 (103)
.++|+|.+||||=+++..|...+.. ..+..+..++
T Consensus 47 ~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~ 83 (235)
T PRK08084 47 YIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDK 83 (235)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHH
Confidence 5789999999999999999987764 2344445443
No 226
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=84.98 E-value=3.8 Score=29.94 Aligned_cols=39 Identities=15% Similarity=0.100 Sum_probs=29.2
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhcc--cceEEEecchh
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRLSAP 42 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~iS~p 42 (103)
+--|++|+|.+||||=-++-.+...+.. .++..++..++
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e~~ 58 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTEGL 58 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECCCC
Confidence 4578999999999999998888877643 45666655443
No 227
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=84.87 E-value=1.5 Score=28.31 Aligned_cols=25 Identities=28% Similarity=0.365 Sum_probs=22.5
Q ss_pred EEEEecCcCCchhHHHHHHHHHhcc
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIGS 31 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~~ 31 (103)
+.+|+|+++|||-=+-|.++-.|..
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~L~~ 49 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTVLYG 49 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHcC
Confidence 7999999999999999999888754
No 228
>CHL00095 clpC Clp protease ATP binding subunit
Probab=84.84 E-value=1.6 Score=39.33 Aligned_cols=54 Identities=33% Similarity=0.460 Sum_probs=37.0
Q ss_pred CCeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHHHcCccHHHhcCC
Q psy4713 3 QPKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQNGLEMDKLLGA 61 (103)
Q Consensus 3 ~pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~~~glDl~~LL~d 61 (103)
.|...+||.|.+|+||=++|..|++.+-......+++.- .+|...|. ..+|.++
T Consensus 537 ~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~---s~~~~~~~--~~~l~g~ 590 (821)
T CHL00095 537 RPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDM---SEYMEKHT--VSKLIGS 590 (821)
T ss_pred CCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEc---hhcccccc--HHHhcCC
Confidence 356678999999999999999999987543344555543 24555443 3455544
No 229
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=84.78 E-value=2 Score=32.29 Aligned_cols=34 Identities=18% Similarity=0.223 Sum_probs=27.0
Q ss_pred EEEEEecCcCCchhHHHHHHHHHhcc--cceEEEec
Q psy4713 6 LILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRL 39 (103)
Q Consensus 6 lIiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~i 39 (103)
.|+.|+|.++|||=-+.+.+...|.. .++.+|..
T Consensus 7 ~ii~ivG~sgsGKTTLi~~li~~l~~~g~~vg~Ik~ 42 (173)
T PRK10751 7 PLLAIAAWSGTGKTTLLKKLIPALCARGIRPGLIKH 42 (173)
T ss_pred eEEEEECCCCChHHHHHHHHHHHHhhcCCeEEEEEE
Confidence 38899999999999999999999875 23445543
No 230
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=84.75 E-value=5.7 Score=26.93 Aligned_cols=44 Identities=16% Similarity=0.307 Sum_probs=33.3
Q ss_pred eEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHH
Q psy4713 5 KLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAK 49 (103)
Q Consensus 5 klIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~ 49 (103)
.-.+||.+..||||=+++-.+..++.. ++.++-=+..|-+++..
T Consensus 25 ~~~~ll~~~tGsGKT~~~~~~~~~l~~-~~l~~~p~~~l~~Q~~~ 68 (184)
T PF04851_consen 25 ERRVLLNAPTGSGKTIIALALILELAR-KVLIVAPNISLLEQWYD 68 (184)
T ss_dssp CSEEEEEESTTSSHHHHHHHHHHHHHC-EEEEEESSHHHHHHHHH
T ss_pred CCCEEEEECCCCCcChhhhhhhhcccc-ceeEecCHHHHHHHHHH
Confidence 456789999999999999987777765 55566555566677766
No 231
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=84.57 E-value=1.3 Score=32.59 Aligned_cols=23 Identities=30% Similarity=0.336 Sum_probs=21.0
Q ss_pred EEEecCcCCchhHHHHHHHHHhc
Q psy4713 8 LLFSGKRKSGKDFLTDYLLERIG 30 (103)
Q Consensus 8 iL~sGKrksGKDy~a~~l~~~l~ 30 (103)
+.|-|.+||||=|.+..|.+.+.
T Consensus 26 ~~I~G~TGsGKS~~~~~ll~~l~ 48 (229)
T PF01935_consen 26 IAIFGTTGSGKSNTVKVLLEELL 48 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 46889999999999999999987
No 232
>PRK04195 replication factor C large subunit; Provisional
Probab=84.31 E-value=1.6 Score=36.56 Aligned_cols=28 Identities=36% Similarity=0.472 Sum_probs=24.9
Q ss_pred CCeEEEEEecCcCCchhHHHHHHHHHhc
Q psy4713 3 QPKLILLFSGKRKSGKDFLTDYLLERIG 30 (103)
Q Consensus 3 ~pklIiL~sGKrksGKDy~a~~l~~~l~ 30 (103)
.|.-.+||+|.+|+||-.++..|.+.++
T Consensus 37 ~~~~~lLL~GppG~GKTtla~ala~el~ 64 (482)
T PRK04195 37 KPKKALLLYGPPGVGKTSLAHALANDYG 64 (482)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 3456789999999999999999999986
No 233
>PRK08118 topology modulation protein; Reviewed
Probab=84.26 E-value=1.2 Score=32.24 Aligned_cols=24 Identities=29% Similarity=0.426 Sum_probs=22.0
Q ss_pred EEEecCcCCchhHHHHHHHHHhcc
Q psy4713 8 LLFSGKRKSGKDFLTDYLLERIGS 31 (103)
Q Consensus 8 iL~sGKrksGKDy~a~~l~~~l~~ 31 (103)
|+|.|-+||||--+|..|.+.++-
T Consensus 4 I~I~G~~GsGKSTlak~L~~~l~~ 27 (167)
T PRK08118 4 IILIGSGGSGKSTLARQLGEKLNI 27 (167)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCC
Confidence 788999999999999999999864
No 234
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=84.22 E-value=1.4 Score=33.49 Aligned_cols=43 Identities=30% Similarity=0.386 Sum_probs=33.6
Q ss_pred eEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHH
Q psy4713 5 KLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHW 47 (103)
Q Consensus 5 klIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~y 47 (103)
+-.|||+|..||||==+...|...+....-+|+.|.+|.--..
T Consensus 127 ~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~~l 169 (270)
T PF00437_consen 127 RGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPELRL 169 (270)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S--
T ss_pred ceEEEEECCCccccchHHHHHhhhccccccceEEeccccceee
Confidence 5689999999999999999998887655578888888764433
No 235
>PRK08727 hypothetical protein; Validated
Probab=84.22 E-value=1.4 Score=33.40 Aligned_cols=37 Identities=27% Similarity=0.289 Sum_probs=27.7
Q ss_pred EEEEecCcCCchhHHHHHHHHHhcc--cceEEEecchhh
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRLSAPI 43 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~iS~pi 43 (103)
-++|+|++|+||=+++..+...+-+ ..+..++..+..
T Consensus 43 ~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~ 81 (233)
T PRK08727 43 WLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAA 81 (233)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhh
Confidence 4899999999999999998776654 345556655544
No 236
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=84.19 E-value=4.3 Score=32.78 Aligned_cols=87 Identities=14% Similarity=0.075 Sum_probs=54.7
Q ss_pred EEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHHHcCccHHHhcCCCCcHHHhHHHHHHHHHHHhccChhh
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQNGLEMDKLLGATKYKEKYRAEMITWSEAERRKDNGC 86 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~~~glDl~~LL~d~~YKE~~R~~mi~wge~~R~~D~g~ 86 (103)
.|+|+|-++|||--+++.|...++.. + ..++.++...+. +.+- ..|....|-+.-+-.+..+.+..++.|.=+
T Consensus 164 ~~~~~G~~~~gkstl~~~l~~~~~~~-~----v~E~~R~~~~~~-~~~~-~~l~~~d~~~i~~g~~~~~~~~~~~a~~ii 236 (325)
T TIGR01526 164 TVAILGGESTGKSTLVNKLAAVFNTT-S----AWEYAREYVEEK-LGGD-EALQYSDYAQIALGQQRYIDYAVRHAHKIA 236 (325)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCCC-E----EeehhHHHHHHh-cCCC-cccCHHHHHHHHHHHHHHHHHHHhhcCCeE
Confidence 57899999999999999999988642 2 445555444443 2121 233333455566666666666666677778
Q ss_pred hHHHHHHHHHHHHh
Q psy4713 87 FIRSAIEMAHAMKK 100 (103)
Q Consensus 87 Fcr~~~~~~~~~~~ 100 (103)
||..-.-...+|-+
T Consensus 237 f~D~~~~~t~~y~~ 250 (325)
T TIGR01526 237 FIDTDFITTQVFAK 250 (325)
T ss_pred EEcCChHHHHHHHH
Confidence 88754444444443
No 237
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=84.12 E-value=1.7 Score=31.17 Aligned_cols=26 Identities=27% Similarity=0.360 Sum_probs=23.0
Q ss_pred eEEEEEecCcCCchhHHHHHHHHHhc
Q psy4713 5 KLILLFSGKRKSGKDFLTDYLLERIG 30 (103)
Q Consensus 5 klIiL~sGKrksGKDy~a~~l~~~l~ 30 (103)
.-.+||.|+.|+||.-++..+...+.
T Consensus 14 ~~~~L~~G~~G~gkt~~a~~~~~~l~ 39 (188)
T TIGR00678 14 AHAYLFAGPEGVGKELLALALAKALL 39 (188)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHc
Confidence 34789999999999999999998874
No 238
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=84.06 E-value=1.7 Score=35.60 Aligned_cols=30 Identities=27% Similarity=0.293 Sum_probs=25.6
Q ss_pred CCCeEEEEEecCcCCchhHHHHHHHHHhcc
Q psy4713 2 TQPKLILLFSGKRKSGKDFLTDYLLERIGS 31 (103)
Q Consensus 2 ~~pklIiL~sGKrksGKDy~a~~l~~~l~~ 31 (103)
.++.-||.|+||-|+||-.++-.|...+.+
T Consensus 28 ~~~~~ii~v~gkgG~GKSt~a~nLa~~la~ 57 (329)
T cd02033 28 TKKTQIIAIYGKGGIGKSFTLANLSYMMAQ 57 (329)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 355678888999999999999999988866
No 239
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=84.00 E-value=1 Score=38.55 Aligned_cols=41 Identities=27% Similarity=0.438 Sum_probs=33.5
Q ss_pred CCeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhh
Q psy4713 3 QPKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPI 43 (103)
Q Consensus 3 ~pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~pi 43 (103)
.|+=+|||||..||||==....+.+.+......|+.|-+|+
T Consensus 240 ~~~GlilitGptGSGKTTtL~a~L~~l~~~~~~iiTiEDpv 280 (486)
T TIGR02533 240 RPHGIILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPV 280 (486)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHhccCCCCCcEEEEcCCe
Confidence 45668999999999998877766677665567799999987
No 240
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=83.85 E-value=1.5 Score=36.28 Aligned_cols=35 Identities=17% Similarity=0.214 Sum_probs=28.2
Q ss_pred EEEEecCcCCchhHHHHHHHHHhccc--ceEEEecch
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIGSQ--HCAIIRLSA 41 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~~~--~~~iv~iS~ 41 (103)
-++|+|.+|+||=+++..+...+.+. .+.++-++.
T Consensus 150 ~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~ 186 (450)
T PRK00149 150 PLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTS 186 (450)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEH
Confidence 47899999999999999999998653 556665554
No 241
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=83.81 E-value=1.1 Score=37.61 Aligned_cols=27 Identities=30% Similarity=0.375 Sum_probs=23.6
Q ss_pred eEEEEEecCcCCchhHHHHHHHHHhcc
Q psy4713 5 KLILLFSGKRKSGKDFLTDYLLERIGS 31 (103)
Q Consensus 5 klIiL~sGKrksGKDy~a~~l~~~l~~ 31 (103)
+--|||+|.+|+||-.+|..|+..++.
T Consensus 108 ~~~iLl~Gp~GtGKT~lAr~lA~~l~~ 134 (412)
T PRK05342 108 KSNILLIGPTGSGKTLLAQTLARILDV 134 (412)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHhCC
Confidence 445899999999999999999998853
No 242
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=83.63 E-value=1.3 Score=33.29 Aligned_cols=25 Identities=32% Similarity=0.549 Sum_probs=22.4
Q ss_pred EEEEecCcCCchhHHHHHHHHHhcc
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIGS 31 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~~ 31 (103)
||++||-+-|||.=+|..|++++..
T Consensus 3 iI~LNG~sSSGKSsia~~Lq~~~~~ 27 (174)
T PF07931_consen 3 IIILNGPSSSGKSSIARALQERLPE 27 (174)
T ss_dssp EEEEEE-TTSSHHHHHHHHHHHSSS
T ss_pred EEEEeCCCCCCHHHHHHHHHHhCcC
Confidence 8999999999999999999999863
No 243
>KOG0635|consensus
Probab=83.51 E-value=2.6 Score=33.28 Aligned_cols=78 Identities=22% Similarity=0.206 Sum_probs=54.8
Q ss_pred CCeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHHHcCccHHHhcCCCCcHHHhHHHHHH-HHHH-Hh
Q psy4713 3 QPKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQNGLEMDKLLGATKYKEKYRAEMIT-WSEA-ER 80 (103)
Q Consensus 3 ~pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~~~glDl~~LL~d~~YKE~~R~~mi~-wge~-~R 80 (103)
++-.+|-+||=++|||--+|=.|...|-+......++-+.- -.|||+ .|=.+||+.|.+=|+ -||. +-
T Consensus 29 qkGcviWiTGLSgSGKStlACaL~q~L~qrgkl~Y~LDGDN-----vRhGLN-----~DL~F~a~dR~ENIRRigeVaKL 98 (207)
T KOG0635|consen 29 QKGCVIWITGLSGSGKSTLACALSQALLQRGKLTYILDGDN-----VRHGLN-----KDLGFKAEDRNENIRRIGEVAKL 98 (207)
T ss_pred CCCcEEEEeccCCCCchhHHHHHHHHHHhcCceEEEecCcc-----cccccc-----cccCcchhhhhhhHHHHHHHHHH
Confidence 46678999999999999999999988876444444444432 236655 677899999988775 3443 23
Q ss_pred ccChhhhHHH
Q psy4713 81 RKDNGCFIRS 90 (103)
Q Consensus 81 ~~D~g~Fcr~ 90 (103)
=+|.|+-|-.
T Consensus 99 FADag~icia 108 (207)
T KOG0635|consen 99 FADAGVICIA 108 (207)
T ss_pred Hhccceeeee
Confidence 4677777653
No 244
>PF05729 NACHT: NACHT domain
Probab=83.45 E-value=1.7 Score=29.17 Aligned_cols=25 Identities=32% Similarity=0.474 Sum_probs=21.8
Q ss_pred EEEEecCcCCchhHHHHHHHHHhcc
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIGS 31 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~~ 31 (103)
+++|+|+.|+||=-++..|...+..
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~ 26 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAE 26 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHh
Confidence 6899999999999888888877765
No 245
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=83.36 E-value=1.4 Score=32.38 Aligned_cols=23 Identities=22% Similarity=0.426 Sum_probs=19.9
Q ss_pred EEEecCcCCchhHHHHHHHHHhc
Q psy4713 8 LLFSGKRKSGKDFLTDYLLERIG 30 (103)
Q Consensus 8 iL~sGKrksGKDy~a~~l~~~l~ 30 (103)
|++||+.|+||=-+...+.+.+.
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~ 24 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELK 24 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhh
Confidence 68999999999999999888884
No 246
>PLN02772 guanylate kinase
Probab=83.03 E-value=1.4 Score=37.62 Aligned_cols=26 Identities=23% Similarity=0.374 Sum_probs=23.1
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHh
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERI 29 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l 29 (103)
.+.+|+|+|.+||||+=+.+.|.+.+
T Consensus 134 ~~k~iVlsGPSGvGKsTL~~~L~~~~ 159 (398)
T PLN02772 134 AEKPIVISGPSGVGKGTLISMLMKEF 159 (398)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhhhc
Confidence 56789999999999999999998765
No 247
>PRK09183 transposase/IS protein; Provisional
Probab=83.02 E-value=1.9 Score=33.54 Aligned_cols=34 Identities=15% Similarity=0.012 Sum_probs=24.6
Q ss_pred EEEEEecCcCCchhHHHHHHHHHhcc--cceEEEec
Q psy4713 6 LILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRL 39 (103)
Q Consensus 6 lIiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~i 39 (103)
-.++|.|.+|+||=+++..|...... ..+..++.
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~ 138 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTA 138 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeH
Confidence 35779999999999999999665433 34444443
No 248
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=82.96 E-value=1.9 Score=33.27 Aligned_cols=25 Identities=16% Similarity=0.177 Sum_probs=22.2
Q ss_pred EEEEecCcCCchhHHHHHHHHHhcc
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIGS 31 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~~ 31 (103)
-||++|..|+||--+|..++..++.
T Consensus 23 ~vLL~G~~GtGKT~lA~~la~~lg~ 47 (262)
T TIGR02640 23 PVHLRGPAGTGKTTLAMHVARKRDR 47 (262)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCC
Confidence 3678999999999999999998864
No 249
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=82.94 E-value=1.9 Score=32.20 Aligned_cols=32 Identities=19% Similarity=0.439 Sum_probs=26.4
Q ss_pred EEEEecCcCCchhHHHHHHHHHhcc--cceEEEe
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIR 38 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~ 38 (103)
|++++||.|+||=.++-.+...+.+ .++.++.
T Consensus 1 ~~~~~g~~g~Gkt~~~~~la~~~a~~g~~~~l~~ 34 (217)
T cd02035 1 VIFFTGKGGVGKTTIAAATAVRLAEEGKKVLLVS 34 (217)
T ss_pred CEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEE
Confidence 6899999999999999999998876 3455553
No 250
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=82.78 E-value=3.6 Score=35.57 Aligned_cols=51 Identities=16% Similarity=0.224 Sum_probs=35.3
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhcc---cceEEEecchh-------hHHHHHHHcCccH
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIGS---QHCAIIRLSAP-------IKSHWAKQNGLEM 55 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~~---~~~~iv~iS~p-------iK~~yA~~~glDl 55 (103)
+..|++|+|..||||--.+..|+..+.. .++.++.. |+ .=+.||...|+++
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~-Dt~R~aA~eQLk~yAe~lgvp~ 282 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTT-DNYRIAAIEQLKRYADTMGMPF 282 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecc-cchhhhHHHHHHHHHHhcCCCe
Confidence 4568999999999999999999976521 34554443 22 2255777777765
No 251
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=82.72 E-value=5.5 Score=33.66 Aligned_cols=58 Identities=19% Similarity=0.232 Sum_probs=44.0
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHH-hc--ccceEEEecchhhHHH--HHHHcCccHHHhcCC
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLER-IG--SQHCAIIRLSAPIKSH--WAKQNGLEMDKLLGA 61 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~-l~--~~~~~iv~iS~piK~~--yA~~~glDl~~LL~d 61 (103)
+--++||+|..||||=-++..+.-. +. ...|..|++.++..+- .|.++|.|++.+..+
T Consensus 20 ~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE~~~~l~~~~~~~G~~~~~~~~~ 82 (484)
T TIGR02655 20 IGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEESPQDIIKNARSFGWDLQKLVDE 82 (484)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCHHHHHHHHHHcCCCHHHHhhc
Confidence 4568999999999999888876433 22 2688888888777654 466889999988644
No 252
>COG2326 Uncharacterized conserved protein [Function unknown]
Probab=82.63 E-value=1.8 Score=35.54 Aligned_cols=48 Identities=19% Similarity=0.422 Sum_probs=43.9
Q ss_pred CCCeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHH
Q psy4713 2 TQPKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAK 49 (103)
Q Consensus 2 ~~pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~ 49 (103)
+..++||+|-|---+|||=....+.+.|+...|+|+.|-.|+=+|=++
T Consensus 71 ~~~~vvivfEGrDAAGKgG~Ikri~~~lNPR~~rvval~aPt~~E~~q 118 (270)
T COG2326 71 TGQRVVIVFEGRDAAGKGGAIKRITEALNPRGARVVALPAPTDRERGQ 118 (270)
T ss_pred cCCeEEEEEecccccCCCchhHHHhhhcCCceeEEeecCCCChHhhcc
Confidence 467999999999999999999999999999999999999999887554
No 253
>PRK06526 transposase; Provisional
Probab=82.57 E-value=2 Score=33.61 Aligned_cols=35 Identities=20% Similarity=0.164 Sum_probs=25.3
Q ss_pred EEEEecCcCCchhHHHHHHHHHhcc--cceEEEecch
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRLSA 41 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~iS~ 41 (103)
-|+|+|+.|+||=+++..+...+-. ..+..++.++
T Consensus 100 nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~ 136 (254)
T PRK06526 100 NVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQ 136 (254)
T ss_pred eEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHH
Confidence 4799999999999999988776543 3444444443
No 254
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=82.47 E-value=2.1 Score=37.96 Aligned_cols=50 Identities=30% Similarity=0.525 Sum_probs=35.0
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHHHcCccHHHhcCC
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQNGLEMDKLLGA 61 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~~~glDl~~LL~d 61 (103)
|.-.+||.|.+|+||=++|..+++.++ +.++++.. .+|...| ...+|.++
T Consensus 483 p~~~~lf~Gp~GvGKT~lA~~la~~l~---~~~~~~d~---se~~~~~--~~~~lig~ 532 (731)
T TIGR02639 483 PVGSFLFTGPTGVGKTELAKQLAEALG---VHLERFDM---SEYMEKH--TVSRLIGA 532 (731)
T ss_pred CceeEEEECCCCccHHHHHHHHHHHhc---CCeEEEeC---chhhhcc--cHHHHhcC
Confidence 566799999999999999999999985 44555543 2354433 23455544
No 255
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=82.47 E-value=2.2 Score=30.44 Aligned_cols=56 Identities=20% Similarity=0.370 Sum_probs=35.9
Q ss_pred EEEEecCcCCchhHHHHHHHHHhccc--ceE-EE-------ecchhhHHHHHHHcCccHHHhcCCC
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIGSQ--HCA-II-------RLSAPIKSHWAKQNGLEMDKLLGAT 62 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~~~--~~~-iv-------~iS~piK~~yA~~~glDl~~LL~d~ 62 (103)
||.|.|.++|||=-++..|.+.|.+. ++. +. .++-|=+.-|.-+.|++.--+..+.
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~ik~~~~g~~~~d~pG~Dt~r~~aGA~~~~~~~~~ 67 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINELKRRGYRVAVIKHTDHGQFEIDPPGTDTWRFKAGADVVLVSSDE 67 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEE-STTSTTCSTTCHHHHHHHCT-SEEEEECSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhHcCCceEEEEEccCCCcccCCCCcccccccccceEEEEEcCC
Confidence 78999999999999999999999863 333 22 2334445333335566655444444
No 256
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=82.46 E-value=3.1 Score=33.37 Aligned_cols=40 Identities=15% Similarity=0.233 Sum_probs=29.0
Q ss_pred CCeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchh
Q psy4713 3 QPKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAP 42 (103)
Q Consensus 3 ~pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~p 42 (103)
.|..=++++|++||||=.+-......--.....|+-|..+
T Consensus 21 ~~~~r~vL~G~~GsGKS~~L~q~~~~A~~~~wiVl~vp~a 60 (309)
T PF10236_consen 21 SKNNRYVLTGERGSGKSVLLAQAVHYARENGWIVLYVPSA 60 (309)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHhCCEEEEEcCCH
Confidence 4566788999999999988777666544456666666555
No 257
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=82.26 E-value=2.7 Score=30.74 Aligned_cols=56 Identities=23% Similarity=0.361 Sum_probs=37.0
Q ss_pred EEEEecCcCCchhHHHHHHHHHhcc--cceEEEecc-------hhhHHHH-HHHcCccHHHhcCCC
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRLS-------APIKSHW-AKQNGLEMDKLLGAT 62 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~iS-------~piK~~y-A~~~glDl~~LL~d~ 62 (103)
||.|+|.++|||--+++.|...+.. .++.++... .|-+.-| -.+.|++..-+.+++
T Consensus 3 vi~i~G~~gsGKTTli~~L~~~l~~~g~~V~~iK~~~~~~~~d~~g~Ds~~~~~aGa~~v~~~~~~ 68 (159)
T cd03116 3 VIGFVGYSGSGKTTLLEKLIPALSARGLRVAVIKHDHHDFDIDTPGKDSYRHREAGAEEVLVSSPR 68 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEecCCcccccCccchHHHHHHcCCCEEEEecCC
Confidence 7899999999999999999999875 345555431 2222222 223566665555554
No 258
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=82.20 E-value=1.7 Score=31.78 Aligned_cols=25 Identities=16% Similarity=0.291 Sum_probs=22.4
Q ss_pred EEEEecCcCCchhHHHHHHHHHhcc
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIGS 31 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~~ 31 (103)
+++++|.+||||-.++..+...++.
T Consensus 5 ~i~l~G~sGsGKSTl~~~la~~l~~ 29 (176)
T PRK09825 5 SYILMGVSGSGKSLIGSKIAALFSA 29 (176)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCC
Confidence 6788999999999999999998764
No 259
>CHL00095 clpC Clp protease ATP binding subunit
Probab=82.14 E-value=4.7 Score=36.40 Aligned_cols=64 Identities=22% Similarity=0.372 Sum_probs=47.1
Q ss_pred EEEEecCcCCchhHHHHHHHHHhccc-------ceEEEecchhhHHHHHHHcCccHHHhcCCCCcHHHhHHHHHHHHHHH
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIGSQ-------HCAIIRLSAPIKSHWAKQNGLEMDKLLGATKYKEKYRAEMITWSEAE 79 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~~~-------~~~iv~iS~piK~~yA~~~glDl~~LL~d~~YKE~~R~~mi~wge~~ 79 (103)
=+|+.|++|+||--+++.|+.++... .+.++++ |+..|+.-..|..++...+-...++-
T Consensus 202 n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l--------------~~~~l~ag~~~~ge~e~rl~~i~~~~ 267 (821)
T CHL00095 202 NPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITL--------------DIGLLLAGTKYRGEFEERLKRIFDEI 267 (821)
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEe--------------eHHHHhccCCCccHHHHHHHHHHHHH
Confidence 35789999999999999999998641 3455544 66677777777777777777777776
Q ss_pred hccCh
Q psy4713 80 RRKDN 84 (103)
Q Consensus 80 R~~D~ 84 (103)
++..+
T Consensus 268 ~~~~~ 272 (821)
T CHL00095 268 QENNN 272 (821)
T ss_pred HhcCC
Confidence 55433
No 260
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=82.03 E-value=2 Score=35.93 Aligned_cols=35 Identities=23% Similarity=0.363 Sum_probs=26.5
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecch
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSA 41 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~ 41 (103)
|.--+|+.|.+|+||-.++..++..++ +..+++++
T Consensus 178 ~pkgvLL~GppGTGKT~LAkalA~~l~---~~fi~i~~ 212 (398)
T PTZ00454 178 PPRGVLLYGPPGTGKTMLAKAVAHHTT---ATFIRVVG 212 (398)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhcC---CCEEEEeh
Confidence 344577889999999999999998875 34455543
No 261
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=82.00 E-value=4.5 Score=32.88 Aligned_cols=37 Identities=22% Similarity=0.271 Sum_probs=29.3
Q ss_pred CCCeEEEEEecCcCCchhHHHHHHHHHhcc-cceEEEe
Q psy4713 2 TQPKLILLFSGKRKSGKDFLTDYLLERIGS-QHCAIIR 38 (103)
Q Consensus 2 ~~pklIiL~sGKrksGKDy~a~~l~~~l~~-~~~~iv~ 38 (103)
.-...||-|+|.++|||=-+++.|...|.+ .++.++.
T Consensus 2 ~~~~~~i~i~G~~gsGKTTl~~~l~~~l~~~~~V~~ik 39 (369)
T PRK14490 2 LFHPFEIAFCGYSGSGKTTLITALVRRLSERFSVGYYK 39 (369)
T ss_pred CCCCEEEEEEeCCCCCHHHHHHHHHHHHhhCceEEEEE
Confidence 345679999999999999999999999976 3444443
No 262
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=82.00 E-value=1.6 Score=34.42 Aligned_cols=26 Identities=23% Similarity=0.339 Sum_probs=23.2
Q ss_pred EEEEEecCcCCchhHHHHHHHHHhcc
Q psy4713 6 LILLFSGKRKSGKDFLTDYLLERIGS 31 (103)
Q Consensus 6 lIiL~sGKrksGKDy~a~~l~~~l~~ 31 (103)
-.+||+|.+|+||=.++..+++.++.
T Consensus 52 ~~~ll~GppG~GKT~la~~ia~~l~~ 77 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLANIIANEMGV 77 (328)
T ss_pred CcEEEECCCCccHHHHHHHHHHHhCC
Confidence 35789999999999999999999874
No 263
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=81.95 E-value=1.6 Score=33.45 Aligned_cols=24 Identities=29% Similarity=0.295 Sum_probs=21.5
Q ss_pred EEEecCcCCchhHHHHHHHHHhcc
Q psy4713 8 LLFSGKRKSGKDFLTDYLLERIGS 31 (103)
Q Consensus 8 iL~sGKrksGKDy~a~~l~~~l~~ 31 (103)
+||+|.+|+||=.++..+...+..
T Consensus 39 lll~Gp~GtGKT~la~~~~~~l~~ 62 (337)
T PRK12402 39 LLVQGPPGSGKTAAVRALARELYG 62 (337)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcC
Confidence 679999999999999999988753
No 264
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=81.83 E-value=3.1 Score=32.83 Aligned_cols=38 Identities=18% Similarity=0.179 Sum_probs=29.6
Q ss_pred CCeEEEEEecCcCCchhHHHHHHHHHhcc--cceEEEecc
Q psy4713 3 QPKLILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRLS 40 (103)
Q Consensus 3 ~pklIiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~iS 40 (103)
.+..+|.|+|..||||=-++..+...+.. .++.++.+-
T Consensus 32 ~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D 71 (300)
T TIGR00750 32 GNAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVD 71 (300)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 35667888899999999999999888765 456666644
No 265
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=81.73 E-value=2.2 Score=34.88 Aligned_cols=33 Identities=21% Similarity=0.411 Sum_probs=26.5
Q ss_pred EEEEecCcCCchhHHHHHHHHHhcccceEEEec
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRL 39 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~i 39 (103)
.|+|||-.||||-=.|..|++.|.+..-+++.+
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l 35 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKELRQEIWRVIHL 35 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHHHHhhhhcccc
Confidence 578999999999999999999998744444433
No 266
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=81.72 E-value=1.9 Score=34.23 Aligned_cols=41 Identities=24% Similarity=0.437 Sum_probs=30.7
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhcc--cceEEEecchhhHH
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRLSAPIKS 45 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~iS~piK~ 45 (103)
++++++.+||-|+||-.+|-.|+..+.. ..+.++- .||...
T Consensus 2 ~~i~~i~~~KGGvGKSt~a~~la~~l~~~g~~vl~iD-~D~~n~ 44 (241)
T PRK13886 2 AKIHMVLQGKGGVGKSFIAATIAQYKASKGQKPLCID-TDPVNA 44 (241)
T ss_pred CeEEEEecCCCCCcHHHHHHHHHHHHHhCCCCEEEEE-CCCCCc
Confidence 5789999999999999999999988865 3444443 345443
No 267
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=81.72 E-value=1.7 Score=32.35 Aligned_cols=23 Identities=30% Similarity=0.551 Sum_probs=21.1
Q ss_pred EEEecCcCCchhHHHHHHHHHhc
Q psy4713 8 LLFSGKRKSGKDFLTDYLLERIG 30 (103)
Q Consensus 8 iL~sGKrksGKDy~a~~l~~~l~ 30 (103)
|+|-|-+||||.-.|..|++.++
T Consensus 3 iiilG~pGaGK~T~A~~La~~~~ 25 (178)
T COG0563 3 ILILGPPGAGKSTLAKKLAKKLG 25 (178)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 67889999999999999999964
No 268
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=81.69 E-value=1.7 Score=33.31 Aligned_cols=25 Identities=28% Similarity=0.410 Sum_probs=22.6
Q ss_pred EEEEecCcCCchhHHHHHHHHHhcc
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIGS 31 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~~ 31 (103)
.++|+|.+|+||=.++..+.+.++.
T Consensus 32 ~~ll~Gp~G~GKT~la~~ia~~~~~ 56 (305)
T TIGR00635 32 HLLLYGPPGLGKTTLAHIIANEMGV 56 (305)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3688999999999999999999874
No 269
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=81.69 E-value=2.9 Score=30.65 Aligned_cols=35 Identities=26% Similarity=0.362 Sum_probs=28.6
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhcc--cceEEEe
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIR 38 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~ 38 (103)
.++|.++|+|-|+||--+|-.|+..+.+ .++.+|-
T Consensus 1 ~~ii~v~s~kGGvGKTt~a~~lA~~la~~g~~vlliD 37 (261)
T TIGR01968 1 ARVIVITSGKGGVGKTTTTANLGTALARLGKKVVLID 37 (261)
T ss_pred CeEEEEecCCCCccHHHHHHHHHHHHHHcCCeEEEEE
Confidence 4789999999999999999999988865 3455554
No 270
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=81.50 E-value=2.2 Score=31.56 Aligned_cols=22 Identities=32% Similarity=0.360 Sum_probs=19.4
Q ss_pred EEEEecCcCCchhHHHHHHHHH
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLER 28 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~ 28 (103)
-|||+|++||||-=+|..|.++
T Consensus 16 gvLi~G~sG~GKStlal~L~~~ 37 (149)
T cd01918 16 GVLITGPSGIGKSELALELIKR 37 (149)
T ss_pred EEEEEcCCCCCHHHHHHHHHHc
Confidence 5899999999999888887776
No 271
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=81.49 E-value=6.9 Score=24.37 Aligned_cols=43 Identities=12% Similarity=0.142 Sum_probs=32.2
Q ss_pred EEEEecCcCCchhHHHHHHHHHhcc----cceEEEecchhhHHHHHH
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIGS----QHCAIIRLSAPIKSHWAK 49 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~~----~~~~iv~iS~piK~~yA~ 49 (103)
.++++|..|+||=+++-.+...+.. ..+.++.-+..+-++...
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~p~~~l~~~~~~ 48 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLAPTRELANQVAE 48 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHhcccCCCEEEEcCcHHHHHHHHH
Confidence 3689999999999988888777753 566677666666666554
No 272
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=81.45 E-value=5 Score=29.53 Aligned_cols=37 Identities=19% Similarity=0.099 Sum_probs=25.8
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhcc--cceEEEecc
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRLS 40 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~iS 40 (103)
+--|++|+|.+|+||=-++-.+...+.. .+|..+..-
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 3568999999999997666666554422 456666665
No 273
>PRK06835 DNA replication protein DnaC; Validated
Probab=81.38 E-value=2.3 Score=34.70 Aligned_cols=36 Identities=22% Similarity=0.350 Sum_probs=27.1
Q ss_pred EEEEEecCcCCchhHHHHHHHHHhccc--ceEEEecch
Q psy4713 6 LILLFSGKRKSGKDFLTDYLLERIGSQ--HCAIIRLSA 41 (103)
Q Consensus 6 lIiL~sGKrksGKDy~a~~l~~~l~~~--~~~iv~iS~ 41 (103)
--++|.|..|+||=|++..+...+... .+..++.++
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~ 221 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADE 221 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHH
Confidence 458999999999999999999988653 344444433
No 274
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=81.33 E-value=1.6 Score=38.08 Aligned_cols=27 Identities=22% Similarity=0.428 Sum_probs=25.1
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhc
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIG 30 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~ 30 (103)
+..||.|.|.+||||--++..|++.|+
T Consensus 283 ~~~ii~i~G~sgsGKst~a~~la~~l~ 309 (512)
T PRK13477 283 RQPIIAIDGPAGAGKSTVTRAVAKKLG 309 (512)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 557899999999999999999999996
No 275
>PRK06893 DNA replication initiation factor; Validated
Probab=81.33 E-value=2.4 Score=32.02 Aligned_cols=34 Identities=24% Similarity=0.255 Sum_probs=27.1
Q ss_pred EEEEecCcCCchhHHHHHHHHHhcc--cceEEEecc
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRLS 40 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~iS 40 (103)
.+++.|++|+||=.++..|...+.. ..+..++.+
T Consensus 41 ~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~ 76 (229)
T PRK06893 41 FFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLS 76 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHH
Confidence 4789999999999999999988744 455666664
No 276
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=81.25 E-value=7.1 Score=30.48 Aligned_cols=57 Identities=21% Similarity=0.235 Sum_probs=38.2
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhc--------ccceEEEecch--hhHH--HHHHHcCccHHHhcC
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIG--------SQHCAIIRLSA--PIKS--HWAKQNGLEMDKLLG 60 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~--------~~~~~iv~iS~--piK~--~yA~~~glDl~~LL~ 60 (103)
+.-|++|+|.+||||==++-.+.-... ...|.-|..-+ +.++ +++...|+|.++++.
T Consensus 94 ~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~~~~~~~gl~~~~~~~ 162 (310)
T TIGR02236 94 TQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQMAEARGLDPDEVLK 162 (310)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHHHHHHHcCCCHHHHhh
Confidence 356889999999999877776654421 13555556555 3443 567788998877543
No 277
>PRK13695 putative NTPase; Provisional
Probab=81.20 E-value=2.2 Score=30.36 Aligned_cols=24 Identities=21% Similarity=0.169 Sum_probs=21.1
Q ss_pred EEEEecCcCCchhHHHHHHHHHhc
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIG 30 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~ 30 (103)
.|+|||..||||.-+...+...+.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~ 25 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLK 25 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999877764
No 278
>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.
Probab=81.18 E-value=2 Score=33.74 Aligned_cols=32 Identities=16% Similarity=0.339 Sum_probs=27.1
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhcccceE
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIGSQHCA 35 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~ 35 (103)
.+.++++.|..++||.-+.+++...+|+..+.
T Consensus 75 ~~~~~~l~G~g~nGKStl~~~l~~l~G~~~~~ 106 (304)
T TIGR01613 75 EQKLFFLYGNGGNGKSTFQNLLSNLLGDYATT 106 (304)
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHhChhhcc
Confidence 35567788999999999999999999986643
No 279
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=81.15 E-value=1.5 Score=37.78 Aligned_cols=21 Identities=24% Similarity=0.368 Sum_probs=18.8
Q ss_pred EEEecCcCCchhHHHHHHHHH
Q psy4713 8 LLFSGKRKSGKDFLTDYLLER 28 (103)
Q Consensus 8 iL~sGKrksGKDy~a~~l~~~ 28 (103)
|||+|++|+||..+|..+.+.
T Consensus 89 vLi~Ge~GtGKt~lAr~i~~~ 109 (531)
T TIGR02902 89 VIIYGPPGVGKTAAARLVLEE 109 (531)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 578999999999999999764
No 280
>PRK14529 adenylate kinase; Provisional
Probab=81.13 E-value=1.4 Score=34.30 Aligned_cols=36 Identities=25% Similarity=0.285 Sum_probs=27.0
Q ss_pred EEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHH
Q psy4713 8 LLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSH 46 (103)
Q Consensus 8 iL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~ 46 (103)
|+|.|..||||.-.+..|++.++- ..++..+-++++
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~~---~~is~gdllr~~ 38 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYDL---AHIESGAIFREH 38 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCC---CCcccchhhhhh
Confidence 677999999999999999999863 334444444443
No 281
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=81.03 E-value=1.8 Score=33.07 Aligned_cols=25 Identities=24% Similarity=0.387 Sum_probs=22.1
Q ss_pred EEEEEecCcCCchhHHHHHHHHHhc
Q psy4713 6 LILLFSGKRKSGKDFLTDYLLERIG 30 (103)
Q Consensus 6 lIiL~sGKrksGKDy~a~~l~~~l~ 30 (103)
.-+||.|.+|+||=.+|..+.+.+.
T Consensus 43 ~~vll~GppGtGKTtlA~~ia~~l~ 67 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVARILGKLFK 67 (261)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4578999999999999999998764
No 282
>PRK05973 replicative DNA helicase; Provisional
Probab=81.00 E-value=6.3 Score=31.02 Aligned_cols=55 Identities=16% Similarity=0.195 Sum_probs=39.9
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHh-cc-cceEEEecchhhHHHHH--HHcCccHHHh
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERI-GS-QHCAIIRLSAPIKSHWA--KQNGLEMDKL 58 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l-~~-~~~~iv~iS~piK~~yA--~~~glDl~~L 58 (103)
|--++||+|..|+||=-++-.+.... .. ..+..+++.++-.+... .+.|.|.+++
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEes~~~i~~R~~s~g~d~~~~ 121 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLEYTEQDVRDRLRALGADRAQF 121 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHHHHcCCChHHh
Confidence 55689999999999987776654433 22 56888999887554433 4678988876
No 283
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=80.99 E-value=1.9 Score=37.69 Aligned_cols=28 Identities=18% Similarity=0.401 Sum_probs=25.1
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhcc
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIGS 31 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~~ 31 (103)
+..+|+|+|-+||||--++..|..+|+.
T Consensus 391 ~g~~Ivl~Gl~GSGKSTia~~La~~L~~ 418 (568)
T PRK05537 391 QGFTVFFTGLSGAGKSTIAKALMVKLME 418 (568)
T ss_pred CCeEEEEECCCCChHHHHHHHHHHHhhh
Confidence 4567888999999999999999999985
No 284
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=80.96 E-value=3.1 Score=33.90 Aligned_cols=32 Identities=22% Similarity=0.324 Sum_probs=28.0
Q ss_pred EEEEecCcCCchhHHHHHHHHHhcc--cceEEEe
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIR 38 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~ 38 (103)
||-|+|.++|||=-+.+.|...|.+ .++.+|.
T Consensus 207 ~~~~~g~~~~GKtt~~~~l~~~l~~~g~~v~~iK 240 (366)
T PRK14489 207 LLGVVGYSGTGKTTLLEKLIPELIARGYRIGLIK 240 (366)
T ss_pred EEEEecCCCCCHHHHHHHHHHHHHHcCCEEEEEE
Confidence 8999999999999999999999976 4566666
No 285
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=80.90 E-value=2.2 Score=36.62 Aligned_cols=26 Identities=23% Similarity=0.445 Sum_probs=23.2
Q ss_pred eEEEEEecCcCCchhHHHHHHHHHhc
Q psy4713 5 KLILLFSGKRKSGKDFLTDYLLERIG 30 (103)
Q Consensus 5 klIiL~sGKrksGKDy~a~~l~~~l~ 30 (103)
.-.+||+|.+|+||-.+|.+++..+.
T Consensus 38 ~hayLf~Gp~G~GKTtlAr~lAk~L~ 63 (486)
T PRK14953 38 SHAYIFAGPRGTGKTTIARILAKVLN 63 (486)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 44689999999999999999999885
No 286
>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2.7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....
Probab=80.62 E-value=3 Score=32.53 Aligned_cols=71 Identities=13% Similarity=0.246 Sum_probs=45.1
Q ss_pred CCeEEEEEecCcCCchhHHHHHHHHHhcc--cceEEEecchhhHHHHHHHcCccHHHhcCCCCcHHHhH----------H
Q psy4713 3 QPKLILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRLSAPIKSHWAKQNGLEMDKLLGATKYKEKYR----------A 70 (103)
Q Consensus 3 ~pklIiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~iS~piK~~yA~~~glDl~~LL~d~~YKE~~R----------~ 70 (103)
..|+||+.-|=...||-|+|..|..-|.- .+|.|+..++--++....... .-..|....|..+ .
T Consensus 10 ~~kl~ivmVGLPArGKs~ia~kl~ryL~w~g~~~~vFn~g~yRR~~~~~~~~----~~ff~p~n~~~~~~R~~~a~~~l~ 85 (222)
T PF01591_consen 10 AGKLVIVMVGLPARGKSYIARKLCRYLNWLGVKTKVFNVGDYRRKLSGAPQD----AEFFDPDNEEAKKLREQIAKEALE 85 (222)
T ss_dssp ---EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHSS-S-----GGGGSTT-HHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCcceeecccceecccccccc----cccCCCCChHHHHHHHHHHHHHHH
Confidence 46899999999999999999999977754 899999988544443333222 2235555554332 4
Q ss_pred HHHHHHH
Q psy4713 71 EMITWSE 77 (103)
Q Consensus 71 ~mi~wge 77 (103)
+|+.|++
T Consensus 86 dl~~~l~ 92 (222)
T PF01591_consen 86 DLIEWLQ 92 (222)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 6788887
No 287
>CHL00175 minD septum-site determining protein; Validated
Probab=80.50 E-value=3.6 Score=31.37 Aligned_cols=35 Identities=31% Similarity=0.355 Sum_probs=28.5
Q ss_pred CCeEEEEEecCcCCchhHHHHHHHHHhcc--cceEEE
Q psy4713 3 QPKLILLFSGKRKSGKDFLTDYLLERIGS--QHCAII 37 (103)
Q Consensus 3 ~pklIiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv 37 (103)
..++|.++|||-|+||=.+|-.|...|.+ .++.+|
T Consensus 14 ~~~vi~v~s~KGGvGKTt~a~nLA~~La~~g~~vlli 50 (281)
T CHL00175 14 MSRIIVITSGKGGVGKTTTTANLGMSIARLGYRVALI 50 (281)
T ss_pred CceEEEEEcCCCCCcHHHHHHHHHHHHHhCCCeEEEE
Confidence 46799999999999999999999988876 344444
No 288
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=80.42 E-value=2.4 Score=29.34 Aligned_cols=26 Identities=19% Similarity=0.270 Sum_probs=23.6
Q ss_pred EEEEEecCcCCchhHHHHHHHHHhcc
Q psy4713 6 LILLFSGKRKSGKDFLTDYLLERIGS 31 (103)
Q Consensus 6 lIiL~sGKrksGKDy~a~~l~~~l~~ 31 (103)
=|.+|+|.+++||=-+.+.+.-.|+.
T Consensus 20 g~~vi~G~Ng~GKStil~ai~~~L~~ 45 (202)
T PF13476_consen 20 GLNVIYGPNGSGKSTILEAIRYALGG 45 (202)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHS
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHcC
Confidence 47899999999999999999998875
No 289
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=80.40 E-value=1.5 Score=37.52 Aligned_cols=22 Identities=18% Similarity=0.394 Sum_probs=19.6
Q ss_pred EEEEecCcCCchhHHHHHHHHH
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLER 28 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~ 28 (103)
=|||.|++|.||+++|..++..
T Consensus 103 ~vLi~GetGtGKel~A~~iH~~ 124 (403)
T COG1221 103 PVLIIGETGTGKELFARLIHAL 124 (403)
T ss_pred cEEEecCCCccHHHHHHHHHHh
Confidence 3799999999999999999943
No 290
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=80.19 E-value=1.9 Score=34.86 Aligned_cols=28 Identities=18% Similarity=0.391 Sum_probs=23.5
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhcc
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIGS 31 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~~ 31 (103)
....++++|+.|+||+++|..+......
T Consensus 156 ~~~~vli~Ge~GtGK~~~A~~ih~~~~~ 183 (463)
T TIGR01818 156 SDITVLINGESGTGKELVARALHRHSPR 183 (463)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHhCCC
Confidence 3456899999999999999999887553
No 291
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=80.11 E-value=2.4 Score=30.61 Aligned_cols=72 Identities=18% Similarity=0.098 Sum_probs=45.0
Q ss_pred EEEEecCcCCchhHHHHHHHHHhcccceE-EEecchhhHHHHHHHcCccHHHhcCCCC----cHHHhHHHHHHHHHHH
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIGSQHCA-IIRLSAPIKSHWAKQNGLEMDKLLGATK----YKEKYRAEMITWSEAE 79 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~~~~~~-iv~iS~piK~~yA~~~glDl~~LL~d~~----YKE~~R~~mi~wge~~ 79 (103)
.+||+|.+|+||.-+|..++..+-..... ..--.-+.-+.......-|+-.+-.++. -+|+-| +++.|....
T Consensus 21 a~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~~i~i~~ir-~i~~~~~~~ 97 (162)
T PF13177_consen 21 ALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKKSIKIDQIR-EIIEFLSLS 97 (162)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSSSBSHHHHH-HHHHHCTSS
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccchhhHHHHH-HHHHHHHHH
Confidence 57899999999999999999988541111 0111223333444444557766655544 578888 888886543
No 292
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=80.04 E-value=6.1 Score=28.92 Aligned_cols=58 Identities=21% Similarity=0.191 Sum_probs=37.3
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhcc--------cceEEEecchh--hH--HHHHHHcCccHHHhcCC
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIGS--------QHCAIIRLSAP--IK--SHWAKQNGLEMDKLLGA 61 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~~--------~~~~iv~iS~p--iK--~~yA~~~glDl~~LL~d 61 (103)
+--|+.|+|.+||||=-++..+...... ..+..+...++ .+ .+.++..|.|.+.+++.
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~~~~~~~~~~~~~~~~ 87 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQIAERFGLDPEEVLDN 87 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHHHHHHhccChHhHhcC
Confidence 3468899999999999999888744321 34444444442 23 24566777777766544
No 293
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=80.02 E-value=2.2 Score=35.86 Aligned_cols=32 Identities=22% Similarity=0.377 Sum_probs=25.4
Q ss_pred EEEEecCcCCchhHHHHHHHHHhcccceEEEecch
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSA 41 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~ 41 (103)
=+|+.|.+|+||-+++..+...++ +.++.+|.
T Consensus 90 giLL~GppGtGKT~la~alA~~~~---~~~~~i~~ 121 (495)
T TIGR01241 90 GVLLVGPPGTGKTLLAKAVAGEAG---VPFFSISG 121 (495)
T ss_pred cEEEECCCCCCHHHHHHHHHHHcC---CCeeeccH
Confidence 378899999999999999998764 44555553
No 294
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=80.00 E-value=2.4 Score=37.49 Aligned_cols=33 Identities=24% Similarity=0.412 Sum_probs=26.0
Q ss_pred EEEEecCcCCchhHHHHHHHHHhcccceEEEecchh
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAP 42 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~p 42 (103)
=|||.|.+||||-.++..++..++ +..++++.|
T Consensus 489 giLL~GppGtGKT~lakalA~e~~---~~fi~v~~~ 521 (733)
T TIGR01243 489 GVLLFGPPGTGKTLLAKAVATESG---ANFIAVRGP 521 (733)
T ss_pred eEEEECCCCCCHHHHHHHHHHhcC---CCEEEEehH
Confidence 468899999999999999999876 344555544
No 295
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=79.97 E-value=1.8 Score=30.48 Aligned_cols=28 Identities=29% Similarity=0.455 Sum_probs=22.8
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhcc
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIGS 31 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~~ 31 (103)
+.-.+++.|.||+||=.+...+.+.+.+
T Consensus 19 ~~~~~~l~G~rg~GKTsLl~~~~~~~~~ 46 (234)
T PF01637_consen 19 PSQHILLYGPRGSGKTSLLKEFINELKE 46 (234)
T ss_dssp -SSEEEEEESTTSSHHHHHHHHHHHCT-
T ss_pred cCcEEEEEcCCcCCHHHHHHHHHHHhhh
Confidence 3456788899999999999999998844
No 296
>COG4240 Predicted kinase [General function prediction only]
Probab=79.78 E-value=2.8 Score=34.83 Aligned_cols=37 Identities=27% Similarity=0.337 Sum_probs=29.5
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhcccc-eEEEecc
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIGSQH-CAIIRLS 40 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~~~~-~~iv~iS 40 (103)
..+|+=|||.-||||-.++-.+...|.... -+++++|
T Consensus 49 rPli~gisGpQGSGKStls~~i~~~L~~kg~ert~~lS 86 (300)
T COG4240 49 RPLIVGISGPQGSGKSTLSALIVRLLAAKGLERTATLS 86 (300)
T ss_pred CceEEEeecCCCCchhhHHHHHHHHHHHhcccceEEee
Confidence 468999999999999999999999987632 2454444
No 297
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=79.72 E-value=2.9 Score=34.14 Aligned_cols=25 Identities=32% Similarity=0.453 Sum_probs=21.4
Q ss_pred EEEEecCcCCchhHHHHHHHHHhcc
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIGS 31 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~~ 31 (103)
+|.||||-||||--+|-.|..++.+
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~ 26 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLS 26 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHh
Confidence 6899999999999999996666654
No 298
>KOG0735|consensus
Probab=79.71 E-value=2.2 Score=40.04 Aligned_cols=32 Identities=22% Similarity=0.417 Sum_probs=29.3
Q ss_pred EEEecCcCCchhHHHHHHHHHhcccceEEEecchh
Q psy4713 8 LLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAP 42 (103)
Q Consensus 8 iL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~p 42 (103)
||+-|..||||-|+|..+++.+ +.++||+-||
T Consensus 704 iLLyGppGcGKT~la~a~a~~~---~~~fisvKGP 735 (952)
T KOG0735|consen 704 ILLYGPPGCGKTLLASAIASNS---NLRFISVKGP 735 (952)
T ss_pred eEEECCCCCcHHHHHHHHHhhC---CeeEEEecCH
Confidence 6788999999999999999886 6899999998
No 299
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=79.63 E-value=2.2 Score=34.50 Aligned_cols=24 Identities=21% Similarity=0.398 Sum_probs=22.4
Q ss_pred EEEEecCcCCchhHHHHHHHHHhc
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIG 30 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~ 30 (103)
||+|+|..+|||--++..|.+.++
T Consensus 1 vi~i~G~t~~GKs~la~~l~~~~~ 24 (287)
T TIGR00174 1 VIFIMGPTAVGKSQLAIQLAKKLN 24 (287)
T ss_pred CEEEECCCCCCHHHHHHHHHHhCC
Confidence 589999999999999999999986
No 300
>PRK10536 hypothetical protein; Provisional
Probab=79.55 E-value=3.1 Score=33.73 Aligned_cols=38 Identities=13% Similarity=0.313 Sum_probs=28.3
Q ss_pred EEEEecCcCCchhHHHHHHHHH-hcccceEEEecchhhH
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLER-IGSQHCAIIRLSAPIK 44 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~-l~~~~~~iv~iS~piK 44 (103)
+++++|.-|+||=|++-.+... +....+..+-|+.|.=
T Consensus 76 lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v 114 (262)
T PRK10536 76 LIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVL 114 (262)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCC
Confidence 8899999999999999988873 4233455555666653
No 301
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=79.40 E-value=2.6 Score=33.78 Aligned_cols=27 Identities=19% Similarity=0.263 Sum_probs=23.2
Q ss_pred eEEEEEecCcCCchhHHHHHHHHHhcc
Q psy4713 5 KLILLFSGKRKSGKDFLTDYLLERIGS 31 (103)
Q Consensus 5 klIiL~sGKrksGKDy~a~~l~~~l~~ 31 (103)
.--+|+.|.+|+||=+++..+.+.++.
T Consensus 156 p~gvLL~GppGtGKT~lakaia~~l~~ 182 (364)
T TIGR01242 156 PKGVLLYGPPGTGKTLLAKAVAHETNA 182 (364)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhCCC
Confidence 334788999999999999999998764
No 302
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=79.26 E-value=3 Score=32.37 Aligned_cols=26 Identities=27% Similarity=0.452 Sum_probs=23.0
Q ss_pred eEEEEEecCcCCchhHHHHHHHHHhc
Q psy4713 5 KLILLFSGKRKSGKDFLTDYLLERIG 30 (103)
Q Consensus 5 klIiL~sGKrksGKDy~a~~l~~~l~ 30 (103)
.-.+||+|.+|+||-.++..+++.+.
T Consensus 36 ~~~~Ll~G~~G~GKt~~a~~la~~l~ 61 (355)
T TIGR02397 36 AHAYLFSGPRGTGKTSIARIFAKALN 61 (355)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 34789999999999999999998874
No 303
>PF13245 AAA_19: Part of AAA domain
Probab=79.13 E-value=8.4 Score=24.91 Aligned_cols=46 Identities=11% Similarity=0.220 Sum_probs=33.0
Q ss_pred EEEEEecCcCCchh-HHHHHHHHHhc-----ccceEEEecchhhHHHHHHHc
Q psy4713 6 LILLFSGKRKSGKD-FLTDYLLERIG-----SQHCAIIRLSAPIKSHWAKQN 51 (103)
Q Consensus 6 lIiL~sGKrksGKD-y~a~~l~~~l~-----~~~~~iv~iS~piK~~yA~~~ 51 (103)
-+++|+|-.||||= -+++.+...+. ...+-++..+...-++.++..
T Consensus 11 ~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 11 PLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHHHHHHHH
Confidence 35788999999999 44555555542 357888888888777777644
No 304
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=78.89 E-value=4.3 Score=37.56 Aligned_cols=80 Identities=25% Similarity=0.393 Sum_probs=59.1
Q ss_pred CCeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHHHcCccHHHhcCCCC----cH------HHhHH--
Q psy4713 3 QPKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQNGLEMDKLLGATK----YK------EKYRA-- 70 (103)
Q Consensus 3 ~pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~~~glDl~~LL~d~~----YK------E~~R~-- 70 (103)
.|-=..||.|.+|+||=-+|..|++.|..+.-..+||-- .||.+.|-. .+|.++++ |- |..|.
T Consensus 519 rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DM---SEy~EkHsV--SrLIGaPPGYVGyeeGG~LTEaVRr~P 593 (786)
T COG0542 519 RPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDM---SEYMEKHSV--SRLIGAPPGYVGYEEGGQLTEAVRRKP 593 (786)
T ss_pred CCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeech---HHHHHHHHH--HHHhCCCCCCceeccccchhHhhhcCC
Confidence 455689999999999999999999999987788888875 488888864 59998865 33 33332
Q ss_pred HHHHHHHHHhccChhhh
Q psy4713 71 EMITWSEAERRKDNGCF 87 (103)
Q Consensus 71 ~mi~wge~~R~~D~g~F 87 (103)
-=+-.++|.=++.|++|
T Consensus 594 ySViLlDEIEKAHpdV~ 610 (786)
T COG0542 594 YSVILLDEIEKAHPDVF 610 (786)
T ss_pred CeEEEechhhhcCHHHH
Confidence 23345556666666665
No 305
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=78.84 E-value=3.3 Score=32.81 Aligned_cols=34 Identities=15% Similarity=0.251 Sum_probs=26.1
Q ss_pred EEEEecCcCCchhHHHHHHHHHhccc--ceEEEecc
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIGSQ--HCAIIRLS 40 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~~~--~~~iv~iS 40 (103)
.++|+|.+|+||=.++..+.+.+.+. .+.++.|+
T Consensus 57 ~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in 92 (394)
T PRK00411 57 NVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYIN 92 (394)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEE
Confidence 36899999999999999998887542 35555554
No 306
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=78.78 E-value=1.8 Score=31.14 Aligned_cols=21 Identities=19% Similarity=0.281 Sum_probs=19.1
Q ss_pred ecCcCCchhHHHHHHHHHhcc
Q psy4713 11 SGKRKSGKDFLTDYLLERIGS 31 (103)
Q Consensus 11 sGKrksGKDy~a~~l~~~l~~ 31 (103)
.|-+||||..++..|..+++.
T Consensus 1 ~G~sGsGKSTla~~la~~l~~ 21 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQLHA 21 (163)
T ss_pred CCCCCCcHHHHHHHHHHHhCC
Confidence 488999999999999999974
No 307
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=78.74 E-value=3 Score=36.41 Aligned_cols=28 Identities=18% Similarity=0.343 Sum_probs=24.1
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhcc
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIGS 31 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~~ 31 (103)
|+-=||+.|.+|+||-.++..+.+.++.
T Consensus 215 ~p~GILLyGPPGTGKT~LAKAlA~eL~~ 242 (512)
T TIGR03689 215 PPKGVLLYGPPGCGKTLIAKAVANSLAQ 242 (512)
T ss_pred CCcceEEECCCCCcHHHHHHHHHHhhcc
Confidence 3445889999999999999999999864
No 308
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=78.69 E-value=4.1 Score=28.34 Aligned_cols=41 Identities=29% Similarity=0.356 Sum_probs=30.7
Q ss_pred EEEEecCcCCchhHHHHHHHHHhcc--cceEEEec--chhhHHHH
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRL--SAPIKSHW 47 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~i--S~piK~~y 47 (103)
|.+.|+|-|+||=.+|-.|+..+.. .++.++-. ..|.-..+
T Consensus 1 I~v~~~kGG~GKTt~a~~la~~la~~g~~VlliD~D~~~~~~~~~ 45 (195)
T PF01656_consen 1 IAVTSGKGGVGKTTIAANLAQALARKGKKVLLIDLDPQAPNLSIL 45 (195)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEESTTSHHHHHH
T ss_pred CEEEcCCCCccHHHHHHHHHhccccccccccccccCcccccHHHH
Confidence 6789999999999999999999976 45666655 33444443
No 309
>PRK10867 signal recognition particle protein; Provisional
Probab=78.59 E-value=6.3 Score=33.65 Aligned_cols=52 Identities=17% Similarity=0.344 Sum_probs=34.4
Q ss_pred CCeEEEEEecCcCCchhHHHHHHHHHhcc---cceEEEecc----hhhH--HHHHHHcCcc
Q psy4713 3 QPKLILLFSGKRKSGKDFLTDYLLERIGS---QHCAIIRLS----APIK--SHWAKQNGLE 54 (103)
Q Consensus 3 ~pklIiL~sGKrksGKDy~a~~l~~~l~~---~~~~iv~iS----~piK--~~yA~~~glD 54 (103)
+|+.||+|+|..||||==.+-.|+..+.. .++.+|..- .... +.||+..|++
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~ 158 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVP 158 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCe
Confidence 35688999999999999988888877743 245555432 2222 2356666665
No 310
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=78.28 E-value=2.9 Score=36.31 Aligned_cols=27 Identities=26% Similarity=0.374 Sum_probs=23.6
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhc
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIG 30 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~ 30 (103)
..-.+||+|.+|+||.-+|.+++..+.
T Consensus 37 ~~hayLf~Gp~GtGKTt~Ak~lAkal~ 63 (559)
T PRK05563 37 ISHAYLFSGPRGTGKTSAAKIFAKAVN 63 (559)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 345688999999999999999999885
No 311
>PLN02318 phosphoribulokinase/uridine kinase
Probab=78.23 E-value=3.9 Score=37.26 Aligned_cols=37 Identities=19% Similarity=0.340 Sum_probs=30.4
Q ss_pred CCeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecch
Q psy4713 3 QPKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSA 41 (103)
Q Consensus 3 ~pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~ 41 (103)
.+.+||.|.|.+||||--++..|...+. .+.+|++-+
T Consensus 63 ~~riIIGIaGpSGSGKTTLAk~LaglLp--~vgvIsmDd 99 (656)
T PLN02318 63 DGIILVGVAGPSGAGKTVFTEKVLNFMP--SIAVISMDN 99 (656)
T ss_pred CCeEEEEEECCCCCcHHHHHHHHHhhCC--CcEEEEEcc
Confidence 3579999999999999999999998874 456666644
No 312
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=78.08 E-value=7.5 Score=30.66 Aligned_cols=50 Identities=24% Similarity=0.417 Sum_probs=33.5
Q ss_pred eEEEEEecCcCCchhHHHHHHHHHhcc--cceEEEecc----hhhH--HHHHHHcCcc
Q psy4713 5 KLILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRLS----APIK--SHWAKQNGLE 54 (103)
Q Consensus 5 klIiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~iS----~piK--~~yA~~~glD 54 (103)
.-||+|+|+.|+||==.+-.|+..+.+ .++.++..- ++.. +.|+...|+.
T Consensus 72 ~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~ 129 (272)
T TIGR00064 72 PNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVD 129 (272)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeE
Confidence 346666799999999988888887755 345555432 1222 3478877755
No 313
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=78.05 E-value=3.6 Score=37.42 Aligned_cols=23 Identities=30% Similarity=0.316 Sum_probs=20.3
Q ss_pred EEEecCcCCchhHHHHHHHHHhc
Q psy4713 8 LLFSGKRKSGKDFLTDYLLERIG 30 (103)
Q Consensus 8 iL~sGKrksGKDy~a~~l~~~l~ 30 (103)
+|+.|++|+||-.+++.++.++-
T Consensus 210 ~LLvGppGvGKT~lae~la~~i~ 232 (758)
T PRK11034 210 PLLVGESGVGKTAIAEGLAWRIV 232 (758)
T ss_pred eEEECCCCCCHHHHHHHHHHHHH
Confidence 46799999999999999998763
No 314
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=77.99 E-value=3.1 Score=33.42 Aligned_cols=24 Identities=21% Similarity=0.371 Sum_probs=20.7
Q ss_pred CeEEEEEecCcCCchhHHHHHHHH
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLE 27 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~ 27 (103)
+.-+|+|||-+||||--++..|..
T Consensus 5 ~~~~i~i~G~~GsGKtt~~~~l~~ 28 (288)
T PRK05416 5 PMRLVIVTGLSGAGKSVALRALED 28 (288)
T ss_pred CceEEEEECCCCCcHHHHHHHHHH
Confidence 445889999999999999999963
No 315
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=77.94 E-value=2.7 Score=33.89 Aligned_cols=25 Identities=24% Similarity=0.368 Sum_probs=21.3
Q ss_pred EEEEecCcCCchhHHHHHHHHHhcc
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIGS 31 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~~ 31 (103)
=++++|+.|+||..+|..+......
T Consensus 164 ~vli~Ge~GtGK~~lA~~ih~~s~~ 188 (445)
T TIGR02915 164 TVLLLGESGTGKEVLARALHQLSDR 188 (445)
T ss_pred CEEEECCCCcCHHHHHHHHHHhCCc
Confidence 3678999999999999999887543
No 316
>PRK09087 hypothetical protein; Validated
Probab=77.88 E-value=2.5 Score=32.31 Aligned_cols=31 Identities=23% Similarity=0.391 Sum_probs=24.6
Q ss_pred EEEEecCcCCchhHHHHHHHHHhcccceEEEecc
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLS 40 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS 40 (103)
.+.++|.+||||=+++..|.+.. .+..+...
T Consensus 46 ~l~l~G~~GsGKThLl~~~~~~~---~~~~i~~~ 76 (226)
T PRK09087 46 VVVLAGPVGSGKTHLASIWREKS---DALLIHPN 76 (226)
T ss_pred eEEEECCCCCCHHHHHHHHHHhc---CCEEecHH
Confidence 36899999999999999999874 34455553
No 317
>smart00242 MYSc Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.
Probab=77.83 E-value=2.1 Score=38.10 Aligned_cols=25 Identities=20% Similarity=0.379 Sum_probs=21.0
Q ss_pred EEEEecCcCCchhHHHHHHHHHhcc
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIGS 31 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~~ 31 (103)
.|+|||++||||-..+..+..-|..
T Consensus 94 sIiisGESGaGKTe~~k~il~yl~~ 118 (677)
T smart00242 94 SIIISGESGAGKTENTKKIMQYLAA 118 (677)
T ss_pred eEEEecCCCCcchHHHHHHHHHHHh
Confidence 5778999999999998888777753
No 318
>PRK15115 response regulator GlrR; Provisional
Probab=77.80 E-value=2.6 Score=33.97 Aligned_cols=27 Identities=19% Similarity=0.383 Sum_probs=22.9
Q ss_pred eEEEEEecCcCCchhHHHHHHHHHhcc
Q psy4713 5 KLILLFSGKRKSGKDFLTDYLLERIGS 31 (103)
Q Consensus 5 klIiL~sGKrksGKDy~a~~l~~~l~~ 31 (103)
...|+++|++|+||..+|..++.....
T Consensus 157 ~~~vli~Ge~GtGk~~lA~~ih~~s~r 183 (444)
T PRK15115 157 DVSVLINGQSGTGKEILAQAIHNASPR 183 (444)
T ss_pred CCeEEEEcCCcchHHHHHHHHHHhcCC
Confidence 346889999999999999999887653
No 319
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=77.79 E-value=3.5 Score=36.47 Aligned_cols=35 Identities=23% Similarity=0.402 Sum_probs=27.0
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecch
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSA 41 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~ 41 (103)
|.--|||.|.+|+||-+++..++..++. ..+.++.
T Consensus 211 ~~~giLL~GppGtGKT~laraia~~~~~---~~i~i~~ 245 (733)
T TIGR01243 211 PPKGVLLYGPPGTGKTLLAKAVANEAGA---YFISING 245 (733)
T ss_pred CCceEEEECCCCCChHHHHHHHHHHhCC---eEEEEec
Confidence 3446889999999999999999998753 3444544
No 320
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=77.58 E-value=3.7 Score=34.29 Aligned_cols=43 Identities=23% Similarity=0.320 Sum_probs=34.3
Q ss_pred eEEEEEecCcCCchhHHHHHHHHHhcc--cceEEEecchhhHHHH
Q psy4713 5 KLILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRLSAPIKSHW 47 (103)
Q Consensus 5 klIiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~iS~piK~~y 47 (103)
.-.+||+|..||||==....+...+.+ ...+|+.|-+|+--.+
T Consensus 149 ~GlilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~ 193 (372)
T TIGR02525 149 AGLGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYIL 193 (372)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhcc
Confidence 346789999999999998888887754 3578999999986543
No 321
>PLN02748 tRNA dimethylallyltransferase
Probab=77.51 E-value=3.6 Score=35.62 Aligned_cols=30 Identities=20% Similarity=0.182 Sum_probs=25.9
Q ss_pred CCCCeEEEEEecCcCCchhHHHHHHHHHhc
Q psy4713 1 MTQPKLILLFSGKRKSGKDFLTDYLLERIG 30 (103)
Q Consensus 1 ~~~pklIiL~sGKrksGKDy~a~~l~~~l~ 30 (103)
|.+..-||+|.|..+|||--+|-.|+.+++
T Consensus 18 ~~~~~~~i~i~GptgsGKs~la~~la~~~~ 47 (468)
T PLN02748 18 QKGKAKVVVVMGPTGSGKSKLAVDLASHFP 47 (468)
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 445556889999999999999999999986
No 322
>PRK05428 HPr kinase/phosphorylase; Provisional
Probab=77.25 E-value=3.5 Score=34.01 Aligned_cols=65 Identities=26% Similarity=0.398 Sum_probs=46.2
Q ss_pred EEEEecCcCCchhHHHHHHHHH---hcc-cceEEEec--------chhhHHHHHHHcCc---cHHHhcCCCCcHHHhHHH
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLER---IGS-QHCAIIRL--------SAPIKSHWAKQNGL---EMDKLLGATKYKEKYRAE 71 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~---l~~-~~~~iv~i--------S~piK~~yA~~~gl---Dl~~LL~d~~YKE~~R~~ 71 (103)
=|||+|++|+||-=||-.|.++ |-. +.+.+-+. +-++=+.+-+..|+ |...|.+.++.+++-+-+
T Consensus 148 GvLi~G~SG~GKSelALeLi~rGh~LVaDD~v~i~~~~~~~L~g~~p~~l~~~lEvRG~GIi~v~~lfG~~av~~~~~I~ 227 (308)
T PRK05428 148 GVLITGESGIGKSETALELIKRGHRLVADDAVDIKRIGPDTLEGRCPELLQHLLEIRGLGIIDVRTLFGATAVRDKKRIQ 227 (308)
T ss_pred EEEEEcCCCCCHHHHHHHHHHcCCceEecCeEEEEEecCCEEEeeCchhhcchhhhcCCcEEehhhhcCccceecCcEEE
Confidence 4899999999999888888887 222 34433333 33455667777776 788888888888776654
No 323
>PRK13973 thymidylate kinase; Provisional
Probab=77.07 E-value=8.8 Score=28.56 Aligned_cols=42 Identities=21% Similarity=0.279 Sum_probs=34.0
Q ss_pred eEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHH
Q psy4713 5 KLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSH 46 (103)
Q Consensus 5 klIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~ 46 (103)
..+|+|-|=-||||-=.++.|++.|......++.++.|....
T Consensus 3 g~~IviEG~dGsGKtTq~~~l~~~l~~~g~~~~~~~~p~~~~ 44 (213)
T PRK13973 3 GRFITFEGGEGAGKSTQIRLLAERLRAAGYDVLVTREPGGSP 44 (213)
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEECCCCCc
Confidence 356777999999999999999999977666777787775433
No 324
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=76.99 E-value=6.7 Score=32.59 Aligned_cols=55 Identities=18% Similarity=0.261 Sum_probs=38.0
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhcc--cceEEEecchhhHH--HHHHHcCccHHHh
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRLSAPIKS--HWAKQNGLEMDKL 58 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~iS~piK~--~yA~~~glDl~~L 58 (103)
|.-+++|+|..|+||--++..+...+.. .++..++..++..+ ..|...|++.+.+
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l 139 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENL 139 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcccE
Confidence 4568999999999999999888877654 34545555444433 3456677776655
No 325
>cd01378 MYSc_type_I Myosin motor domain, type I myosins. Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon
Probab=76.79 E-value=2.3 Score=38.01 Aligned_cols=25 Identities=20% Similarity=0.389 Sum_probs=21.1
Q ss_pred EEEEecCcCCchhHHHHHHHHHhcc
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIGS 31 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~~ 31 (103)
-|+|||++||||--.+..+..-|..
T Consensus 88 sIiisGESGaGKTe~~K~il~yL~~ 112 (674)
T cd01378 88 CVIISGESGAGKTEAAKKIMQYIAA 112 (674)
T ss_pred eEEEEcCCCCCcchHHHHHHHHHHh
Confidence 3678999999999999888887753
No 326
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=76.62 E-value=4.1 Score=32.55 Aligned_cols=40 Identities=23% Similarity=0.305 Sum_probs=31.3
Q ss_pred eEEEEEecCcCCchhHHHHHHHHHhcc--cceEEEecchhhH
Q psy4713 5 KLILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRLSAPIK 44 (103)
Q Consensus 5 klIiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~iS~piK 44 (103)
+.-|||+|..||||==+...|...+.. ...+|+.|-+|.-
T Consensus 132 ~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~E 173 (299)
T TIGR02782 132 RKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRE 173 (299)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchh
Confidence 445789999999999999999988754 2467777777643
No 327
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=76.58 E-value=30 Score=26.13 Aligned_cols=68 Identities=12% Similarity=0.154 Sum_probs=50.0
Q ss_pred CCeEEEEEecCcCCchhHHHHHHHHHhcc---cceEEEec----chhhHHHHHHHcCccHHHhcCCCCcHHHhHH
Q psy4713 3 QPKLILLFSGKRKSGKDFLTDYLLERIGS---QHCAIIRL----SAPIKSHWAKQNGLEMDKLLGATKYKEKYRA 70 (103)
Q Consensus 3 ~pklIiL~sGKrksGKDy~a~~l~~~l~~---~~~~iv~i----S~piK~~yA~~~glDl~~LL~d~~YKE~~R~ 70 (103)
.|.-+++|.|.+++||=-.+-.++..+.. ..+..+|+ ..-..|..|...|.+++++.+..-..|.+..
T Consensus 17 ~~g~L~vi~a~pg~GKT~~~l~ia~~~a~~~~~~vly~SlEm~~~~l~~R~la~~s~v~~~~i~~g~l~~~e~~~ 91 (259)
T PF03796_consen 17 RPGELTVIAARPGVGKTAFALQIALNAALNGGYPVLYFSLEMSEEELAARLLARLSGVPYNKIRSGDLSDEEFER 91 (259)
T ss_dssp -TT-EEEEEESTTSSHHHHHHHHHHHHHHTTSSEEEEEESSS-HHHHHHHHHHHHHTSTHHHHHCCGCHHHHHHH
T ss_pred CcCcEEEEEecccCCchHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhhcchhhhhhccccCHHHHHH
Confidence 35567899999999999888877776644 46777777 4556778888999999999875555555544
No 328
>cd01377 MYSc_type_II Myosin motor domain, type II myosins. Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro
Probab=76.57 E-value=2.4 Score=38.00 Aligned_cols=25 Identities=24% Similarity=0.387 Sum_probs=21.2
Q ss_pred EEEEecCcCCchhHHHHHHHHHhcc
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIGS 31 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~~ 31 (103)
.|+|||++||||=-.+..+..-|..
T Consensus 93 sIiiSGESGAGKTes~K~il~yLa~ 117 (693)
T cd01377 93 SILITGESGAGKTENTKKVIQYLAS 117 (693)
T ss_pred eEEEEcCCCCCchHHHHHHHHHHHh
Confidence 5788999999999998888877743
No 329
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=76.39 E-value=5.2 Score=30.37 Aligned_cols=36 Identities=17% Similarity=0.245 Sum_probs=29.7
Q ss_pred CCeEEEEEecCcCCchhHHHHHHHHHhcc--cceEEEe
Q psy4713 3 QPKLILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIR 38 (103)
Q Consensus 3 ~pklIiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~ 38 (103)
.+++|.+.|+|.|.||=.+|-.|+..+.. .++-+|-
T Consensus 102 ~~~vi~vts~~~g~Gktt~a~nLA~~la~~g~~VllID 139 (274)
T TIGR03029 102 GRKALAVVSAKSGEGCSYIAANLAIVFSQLGEKTLLID 139 (274)
T ss_pred CCeEEEEECCCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 57899999999999999999999999865 3444443
No 330
>PLN02840 tRNA dimethylallyltransferase
Probab=76.30 E-value=3.3 Score=35.50 Aligned_cols=29 Identities=24% Similarity=0.392 Sum_probs=25.6
Q ss_pred CCeEEEEEecCcCCchhHHHHHHHHHhcc
Q psy4713 3 QPKLILLFSGKRKSGKDFLTDYLLERIGS 31 (103)
Q Consensus 3 ~pklIiL~sGKrksGKDy~a~~l~~~l~~ 31 (103)
++..||+|+|..||||--++..|+..++.
T Consensus 19 ~~~~vi~I~GptgsGKTtla~~La~~~~~ 47 (421)
T PLN02840 19 KKEKVIVISGPTGAGKSRLALELAKRLNG 47 (421)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHCCC
Confidence 34568999999999999999999999863
No 331
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=76.24 E-value=7.5 Score=30.68 Aligned_cols=42 Identities=26% Similarity=0.361 Sum_probs=30.1
Q ss_pred EEEecCcCCchhHHHHHHHHHhcccc--eEEEecchhhHHHHHH
Q psy4713 8 LLFSGKRKSGKDFLTDYLLERIGSQH--CAIIRLSAPIKSHWAK 49 (103)
Q Consensus 8 iL~sGKrksGKDy~a~~l~~~l~~~~--~~iv~iS~piK~~yA~ 49 (103)
+|+.|.+||||--+.....+.+.... ...+.+|.-+.....+
T Consensus 36 vLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~Tts~~~q 79 (272)
T PF12775_consen 36 VLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQTTSNQLQ 79 (272)
T ss_dssp EEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTHHHHHHH
T ss_pred EEEECCCCCchhHHHHhhhccCCccccceeEeeccCCCCHHHHH
Confidence 68999999999988877666666544 5567788877655443
No 332
>KOG3308|consensus
Probab=76.24 E-value=14 Score=29.83 Aligned_cols=73 Identities=25% Similarity=0.287 Sum_probs=48.1
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHHHcCcc---HHHhcCCCCcHHHhHHHHHHHHHHH
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQNGLE---MDKLLGATKYKEKYRAEMITWSEAE 79 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~~~glD---l~~LL~d~~YKE~~R~~mi~wge~~ 79 (103)
+-+||-|||=++|||-=+|..|++.|+ .|++|+=-+=-|-+=..+++.+ =-.|+. +-+=|..=...-.|-+..
T Consensus 3 K~~ivgiSG~TnsGKTTLak~l~~~f~--~~~lIhqDDFyKp~~Ei~v~~~n~~~wd~~e-sLdm~~fl~~ia~~l~~~ 78 (225)
T KOG3308|consen 3 KTLIVGISGCTNSGKTTLAKSLHRFFP--GCSLIHQDDFYKPENEIEVDYNNIDNWDLLE-SLDMEKFLEKIATWLDSR 78 (225)
T ss_pred eEEEEEeecccCCCHhHHHHHHHHHcc--CCeeeccccccCchhhhhcccCCcchhcchh-hhhHHHHHHHHHHHhcCc
Confidence 459999999999999999999999996 6778877666565544444333 222222 223344444555665543
No 333
>PRK11823 DNA repair protein RadA; Provisional
Probab=76.20 E-value=8.4 Score=32.55 Aligned_cols=56 Identities=21% Similarity=0.273 Sum_probs=39.8
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhcc--cceEEEecchhhHHH--HHHHcCccHHHhc
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRLSAPIKSH--WAKQNGLEMDKLL 59 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~iS~piK~~--yA~~~glDl~~LL 59 (103)
|.-++||+|..|+||=-++..+...+.+ .++..++..++..+. .|...|+|++.+.
T Consensus 79 ~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~ 138 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERLGLPSDNLY 138 (446)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHcCCChhcEE
Confidence 4568999999999999988888777642 455666665554432 3677788776643
No 334
>PRK14974 cell division protein FtsY; Provisional
Probab=76.15 E-value=5.2 Score=32.96 Aligned_cols=51 Identities=18% Similarity=0.278 Sum_probs=33.4
Q ss_pred eEEEEEecCcCCchhHHHHHHHHHhccc--ceEEEecc----hhhH--HHHHHHcCccH
Q psy4713 5 KLILLFSGKRKSGKDFLTDYLLERIGSQ--HCAIIRLS----APIK--SHWAKQNGLEM 55 (103)
Q Consensus 5 klIiL~sGKrksGKDy~a~~l~~~l~~~--~~~iv~iS----~piK--~~yA~~~glDl 55 (103)
..||+|+|..|+||-=.+..++..+.+. ++.++..- +++. +.||...|+.+
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v 198 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKV 198 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCce
Confidence 5799999999999999888888777653 34443321 1111 34667667643
No 335
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=76.11 E-value=13 Score=24.65 Aligned_cols=44 Identities=11% Similarity=0.178 Sum_probs=29.4
Q ss_pred EEEEEecCcCCchhHHHHHHHHHhcc----cceEEEecchhhHHHHHH
Q psy4713 6 LILLFSGKRKSGKDFLTDYLLERIGS----QHCAIIRLSAPIKSHWAK 49 (103)
Q Consensus 6 lIiL~sGKrksGKDy~a~~l~~~l~~----~~~~iv~iS~piK~~yA~ 49 (103)
-.++|.|..||||=.+.-.+...... ..+.++.-+..+..++.+
T Consensus 25 ~~~~i~~~~GsGKT~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~ 72 (201)
T smart00487 25 RDVILAAPTGSGKTLAALLPALEALKRGKGKRVLVLVPTRELAEQWAE 72 (201)
T ss_pred CcEEEECCCCCchhHHHHHHHHHHhcccCCCcEEEEeCCHHHHHHHHH
Confidence 35789999999999955554444432 245566665666676666
No 336
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=76.07 E-value=9.8 Score=32.68 Aligned_cols=47 Identities=17% Similarity=0.331 Sum_probs=36.9
Q ss_pred EEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHHHcCccHHHhcC
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQNGLEMDKLLG 60 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~~~glDl~~LL~ 60 (103)
-|.++|-+||||--++..|++.++ +..+....-+++ .+|..+.+++.
T Consensus 2 ~I~l~G~~GsGKSTv~~~La~~lg---~~~id~D~~i~~----~~g~~i~~i~~ 48 (488)
T PRK13951 2 RIFLVGMMGSGKSTIGKRVSEVLD---LQFIDMDEEIER----REGRSVRRIFE 48 (488)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcC---CeEEECcHHHHH----HcCCCHHHHHH
Confidence 478999999999999999999885 666777766655 46777777654
No 337
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=76.04 E-value=3.4 Score=33.30 Aligned_cols=25 Identities=20% Similarity=0.336 Sum_probs=21.4
Q ss_pred EEEEEecCcCCchhHHHHHHHHHhc
Q psy4713 6 LILLFSGKRKSGKDFLTDYLLERIG 30 (103)
Q Consensus 6 lIiL~sGKrksGKDy~a~~l~~~l~ 30 (103)
.-+|++|++|+||..+|..+.....
T Consensus 167 ~~vli~Ge~GtGK~~lA~~ih~~s~ 191 (457)
T PRK11361 167 ASVLISGESGTGKELIARAIHYNSR 191 (457)
T ss_pred cEEEEEcCCCccHHHHHHHHHHhCC
Confidence 3478999999999999999987654
No 338
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=75.98 E-value=4.9 Score=32.47 Aligned_cols=39 Identities=31% Similarity=0.386 Sum_probs=32.7
Q ss_pred CCeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecch
Q psy4713 3 QPKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSA 41 (103)
Q Consensus 3 ~pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~ 41 (103)
.|-.=+|+.|.||+||-=+...+...+.....++|.++.
T Consensus 50 ~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k 88 (249)
T PF05673_consen 50 LPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSK 88 (249)
T ss_pred CCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECH
Confidence 456668899999999998888888888887888888864
No 339
>KOG0733|consensus
Probab=75.61 E-value=2.7 Score=38.83 Aligned_cols=36 Identities=28% Similarity=0.492 Sum_probs=30.0
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchh
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAP 42 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~p 42 (103)
|.-=||+-|..||||-.+|+.++..++ +-.++||+|
T Consensus 222 PprGvLlHGPPGCGKT~lA~AiAgel~---vPf~~isAp 257 (802)
T KOG0733|consen 222 PPRGVLLHGPPGCGKTSLANAIAGELG---VPFLSISAP 257 (802)
T ss_pred CCCceeeeCCCCccHHHHHHHHhhhcC---CceEeecch
Confidence 555689999999999999999998875 666777766
No 340
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=75.61 E-value=5.1 Score=28.27 Aligned_cols=23 Identities=35% Similarity=0.433 Sum_probs=21.7
Q ss_pred EEEEecCcCCchhHHHHHHHHHh
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERI 29 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l 29 (103)
|.+.|||-|+||=.+|-.|+..+
T Consensus 2 I~v~s~kgG~GKSt~a~nLA~~l 24 (179)
T cd03110 2 IAVISGKGGTGKTTVTAALAALL 24 (179)
T ss_pred EEEEcCCCCCCHHHHHHHHHHHH
Confidence 67889999999999999999998
No 341
>PRK13949 shikimate kinase; Provisional
Probab=75.57 E-value=11 Score=27.41 Aligned_cols=59 Identities=17% Similarity=0.236 Sum_probs=38.0
Q ss_pred EEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHHHcCccHHHhcCCCCcHHHhHHHHHH
Q psy4713 8 LLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQNGLEMDKLLGATKYKEKYRAEMIT 74 (103)
Q Consensus 8 iL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~~~glDl~~LL~d~~YKE~~R~~mi~ 74 (103)
|+|.|-+||||=-++..|...++ +..+..-.-+ .+..|..+.++..+ ...|.+|..-..
T Consensus 4 I~liG~~GsGKstl~~~La~~l~---~~~id~D~~i----~~~~~~~~~~~~~~-~g~~~fr~~e~~ 62 (169)
T PRK13949 4 IFLVGYMGAGKTTLGKALARELG---LSFIDLDFFI----ENRFHKTVGDIFAE-RGEAVFRELERN 62 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC---CCeecccHHH----HHHHCccHHHHHHH-hCHHHHHHHHHH
Confidence 77889999999999999999986 4455544333 33445566665543 234455554443
No 342
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=75.54 E-value=3.4 Score=33.40 Aligned_cols=72 Identities=13% Similarity=0.003 Sum_probs=44.6
Q ss_pred CCCCeEEEEEecCcCCchhHHHHHHHHHhcccc----eEEEecchhhHHHHHHHcCccHHHhcCC--CCcHHHhHHHHHH
Q psy4713 1 MTQPKLILLFSGKRKSGKDFLTDYLLERIGSQH----CAIIRLSAPIKSHWAKQNGLEMDKLLGA--TKYKEKYRAEMIT 74 (103)
Q Consensus 1 ~~~pklIiL~sGKrksGKDy~a~~l~~~l~~~~----~~iv~iS~piK~~yA~~~glDl~~LL~d--~~YKE~~R~~mi~ 74 (103)
|.++.--+||+|..|+||.=+|..++..+-=.+ |-. -+--+.++.-..-|+-.+... .-.+|+-|.-.-.
T Consensus 3 ~~~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~----C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~ 78 (261)
T PRK05818 3 MKNKTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKT----CESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINK 78 (261)
T ss_pred CCCCCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCC----CHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHH
Confidence 788889999999999999999999998873110 100 012233444444455544333 3467888864444
Q ss_pred HH
Q psy4713 75 WS 76 (103)
Q Consensus 75 wg 76 (103)
+.
T Consensus 79 l~ 80 (261)
T PRK05818 79 LN 80 (261)
T ss_pred Hc
Confidence 43
No 343
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=75.51 E-value=3 Score=36.20 Aligned_cols=24 Identities=21% Similarity=0.292 Sum_probs=22.2
Q ss_pred EEEEecCcCCchhHHHHHHHHHhc
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIG 30 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~ 30 (103)
-+||+|.+|+||--+|.++++.+.
T Consensus 45 a~Lf~Gp~G~GKTT~ArilAk~Ln 68 (507)
T PRK06645 45 GYLLTGIRGVGKTTSARIIAKAVN 68 (507)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhc
Confidence 579999999999999999999985
No 344
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=75.49 E-value=5.2 Score=29.01 Aligned_cols=24 Identities=38% Similarity=0.445 Sum_probs=17.2
Q ss_pred EEEecCcCCchhHHHHHHHHHhcc
Q psy4713 8 LLFSGKRKSGKDFLTDYLLERIGS 31 (103)
Q Consensus 8 iL~sGKrksGKDy~a~~l~~~l~~ 31 (103)
+||.|.+||||-.+...+...+-.
T Consensus 41 ~li~G~tgsGKS~~l~~ll~~l~~ 64 (205)
T PF01580_consen 41 LLIAGATGSGKSTLLRTLLLSLAL 64 (205)
T ss_dssp EEEE--TTSSHHHHHHHHHHHHHT
T ss_pred EEEEcCCCCCccHHHHHHHHHHHH
Confidence 688999999999988866655544
No 345
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=75.40 E-value=4.5 Score=32.20 Aligned_cols=27 Identities=33% Similarity=0.459 Sum_probs=23.6
Q ss_pred eEEEEEecCcCCchhHHHHHHHHHhcc
Q psy4713 5 KLILLFSGKRKSGKDFLTDYLLERIGS 31 (103)
Q Consensus 5 klIiL~sGKrksGKDy~a~~l~~~l~~ 31 (103)
.-.+||+|..|+||..++..+...+..
T Consensus 39 ~~~~L~~G~~G~GKt~~a~~la~~l~~ 65 (367)
T PRK14970 39 AQALLFCGPRGVGKTTCARILARKINQ 65 (367)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 347899999999999999999998853
No 346
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=75.37 E-value=4.1 Score=29.09 Aligned_cols=25 Identities=24% Similarity=0.414 Sum_probs=22.1
Q ss_pred EEEEecCcCCchhHHHHHHHHHhcc
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIGS 31 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~~ 31 (103)
+|.|+|+.||||=-++..|...+.+
T Consensus 1 ~i~~~G~~GsGKTt~~~~l~~~~~~ 25 (148)
T cd03114 1 VIGITGVPGAGKSTLIDALITALRA 25 (148)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHH
Confidence 3788999999999999999988865
No 347
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=75.26 E-value=2 Score=37.21 Aligned_cols=21 Identities=33% Similarity=0.556 Sum_probs=17.3
Q ss_pred CCCeEEEEEecCcCCchhHHH
Q psy4713 2 TQPKLILLFSGKRKSGKDFLT 22 (103)
Q Consensus 2 ~~pklIiL~sGKrksGKDy~a 22 (103)
.+|--+|+|+|.|||||-=+.
T Consensus 14 e~~~TFIvV~GPrGSGK~elV 34 (431)
T PF10443_consen 14 ENPNTFIVVQGPRGSGKRELV 34 (431)
T ss_pred cCCCeEEEEECCCCCCccHHH
Confidence 567789999999999996544
No 348
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=75.12 E-value=2.9 Score=38.19 Aligned_cols=26 Identities=23% Similarity=0.408 Sum_probs=23.1
Q ss_pred eEEEEEecCcCCchhHHHHHHHHHhc
Q psy4713 5 KLILLFSGKRKSGKDFLTDYLLERIG 30 (103)
Q Consensus 5 klIiL~sGKrksGKDy~a~~l~~~l~ 30 (103)
.--+||+|.+|+||-.++.++.+.|.
T Consensus 38 ~Ha~Lf~GP~GvGKTTlAriLAk~Ln 63 (709)
T PRK08691 38 HHAYLLTGTRGVGKTTIARILAKSLN 63 (709)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHhc
Confidence 34689999999999999999999875
No 349
>PHA00520 packaging NTPase P4
Probab=75.08 E-value=3.4 Score=34.83 Aligned_cols=39 Identities=28% Similarity=0.474 Sum_probs=35.3
Q ss_pred EEEEecCcCCchhHHHHHHHHHhcc-cceEEEecchhhHH
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIGS-QHCAIIRLSAPIKS 45 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~~-~~~~iv~iS~piK~ 45 (103)
+.++.||.+|||-=.++.+...++. +...+||+-+|+--
T Consensus 126 v~vvvG~t~sGKT~~~na~a~~vgg~d~y~vIR~GEp~~~ 165 (330)
T PHA00520 126 VEVVVGGTGSGKTPLLNALAPDVGGGDKYAVIRWGEPLEG 165 (330)
T ss_pred eEEEEccCCCCCchhhhhhhhhhcCCCceeEEEecCcccc
Confidence 5688999999999999999999966 89999999999864
No 350
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=75.02 E-value=4 Score=35.58 Aligned_cols=26 Identities=27% Similarity=0.413 Sum_probs=23.2
Q ss_pred eEEEEEecCcCCchhHHHHHHHHHhc
Q psy4713 5 KLILLFSGKRKSGKDFLTDYLLERIG 30 (103)
Q Consensus 5 klIiL~sGKrksGKDy~a~~l~~~l~ 30 (103)
.-.+||+|.+|+||--++.++++.+.
T Consensus 38 ~hayLf~Gp~G~GKtt~A~~lak~l~ 63 (576)
T PRK14965 38 AHAFLFTGARGVGKTSTARILAKALN 63 (576)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhhc
Confidence 44679999999999999999999985
No 351
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=74.98 E-value=3.3 Score=33.49 Aligned_cols=25 Identities=28% Similarity=0.425 Sum_probs=22.4
Q ss_pred EEEEEecCcCCchhHHHHHHHHHhc
Q psy4713 6 LILLFSGKRKSGKDFLTDYLLERIG 30 (103)
Q Consensus 6 lIiL~sGKrksGKDy~a~~l~~~l~ 30 (103)
-.+||+|.+|+||--+|..+++.+.
T Consensus 39 h~~L~~Gp~G~GKTtla~~la~~l~ 63 (363)
T PRK14961 39 HAWLLSGTRGVGKTTIARLLAKSLN 63 (363)
T ss_pred eEEEEecCCCCCHHHHHHHHHHHhc
Confidence 3579999999999999999999885
No 352
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=74.96 E-value=4.4 Score=28.12 Aligned_cols=26 Identities=27% Similarity=0.337 Sum_probs=23.2
Q ss_pred EEEEEecCcCCchhHHHHHHHHHhcc
Q psy4713 6 LILLFSGKRKSGKDFLTDYLLERIGS 31 (103)
Q Consensus 6 lIiL~sGKrksGKDy~a~~l~~~l~~ 31 (103)
.|.+.+||.|+||--++-.|...+..
T Consensus 1 ~i~~~~~kgg~gkt~~~~~~a~~~~~ 26 (139)
T cd02038 1 IIAVTSGKGGVGKTNISANLALALAK 26 (139)
T ss_pred CEEEEcCCCCCcHHHHHHHHHHHHHH
Confidence 37789999999999999999999875
No 353
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=74.92 E-value=5.1 Score=34.20 Aligned_cols=28 Identities=18% Similarity=0.336 Sum_probs=23.8
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhcc
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIGS 31 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~~ 31 (103)
|..-+|+.|.+|+||-.+|..++..++.
T Consensus 216 ~p~gVLL~GPPGTGKT~LAraIA~el~~ 243 (438)
T PTZ00361 216 PPKGVILYGPPGTGKTLLAKAVANETSA 243 (438)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhCC
Confidence 4445778899999999999999998864
No 354
>cd00124 MYSc Myosin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila
Probab=74.89 E-value=2.9 Score=37.16 Aligned_cols=25 Identities=24% Similarity=0.414 Sum_probs=20.3
Q ss_pred EEEEecCcCCchhHHHHHHHHHhcc
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIGS 31 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~~ 31 (103)
.|+|||++||||--.+..+..-|..
T Consensus 88 sIiisGESGaGKTe~~k~il~yl~~ 112 (679)
T cd00124 88 SIIISGESGAGKTENTKLIMKYLAS 112 (679)
T ss_pred eEEEecCCCCCchHHHHHHHHHHHh
Confidence 5778999999999888887776643
No 355
>PRK13975 thymidylate kinase; Provisional
Probab=74.86 E-value=5.2 Score=28.48 Aligned_cols=26 Identities=27% Similarity=0.469 Sum_probs=24.1
Q ss_pred EEEEEecCcCCchhHHHHHHHHHhcc
Q psy4713 6 LILLFSGKRKSGKDFLTDYLLERIGS 31 (103)
Q Consensus 6 lIiL~sGKrksGKDy~a~~l~~~l~~ 31 (103)
.+|+|.|-.||||-=++..|++.++.
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~~ 28 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLNA 28 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 58999999999999999999999974
No 356
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=74.83 E-value=3.8 Score=35.71 Aligned_cols=28 Identities=36% Similarity=0.543 Sum_probs=25.0
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhcc
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIGS 31 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~~ 31 (103)
++-|+|+||..||||==...+|++.++-
T Consensus 44 ~~~iLlLtGP~G~GKtttv~~La~elg~ 71 (519)
T PF03215_consen 44 PKRILLLTGPSGCGKTTTVKVLAKELGF 71 (519)
T ss_pred CcceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4569999999999999999999999874
No 357
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=74.50 E-value=3.3 Score=35.16 Aligned_cols=26 Identities=31% Similarity=0.406 Sum_probs=23.6
Q ss_pred eEEEEEecCcCCchhHHHHHHHHHhc
Q psy4713 5 KLILLFSGKRKSGKDFLTDYLLERIG 30 (103)
Q Consensus 5 klIiL~sGKrksGKDy~a~~l~~~l~ 30 (103)
+--|||+|.+|+||-.+|..++..++
T Consensus 116 ~~~iLL~GP~GsGKT~lAraLA~~l~ 141 (413)
T TIGR00382 116 KSNILLIGPTGSGKTLLAQTLARILN 141 (413)
T ss_pred CceEEEECCCCcCHHHHHHHHHHhcC
Confidence 35699999999999999999999886
No 358
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=74.42 E-value=3.9 Score=36.04 Aligned_cols=31 Identities=19% Similarity=0.362 Sum_probs=25.2
Q ss_pred EEEecCcCCchhHHHHHHHHHhcccceEEEecch
Q psy4713 8 LLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSA 41 (103)
Q Consensus 8 iL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~ 41 (103)
||++|.+|+||-.++..+...++ +..+.+|.
T Consensus 188 ill~G~~G~GKt~~~~~~a~~~~---~~f~~is~ 218 (644)
T PRK10733 188 VLMVGPPGTGKTLLAKAIAGEAK---VPFFTISG 218 (644)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC---CCEEEEeh
Confidence 88999999999999999998875 34455554
No 359
>COG1493 HprK Serine kinase of the HPr protein, regulates carbohydrate metabolism [Signal transduction mechanisms]
Probab=74.17 E-value=3.2 Score=34.63 Aligned_cols=22 Identities=32% Similarity=0.404 Sum_probs=20.2
Q ss_pred EEEecCcCCchhHHHHHHHHHh
Q psy4713 8 LLFSGKRKSGKDFLTDYLLERI 29 (103)
Q Consensus 8 iL~sGKrksGKDy~a~~l~~~l 29 (103)
|||||.||+||-=+|-.|.++-
T Consensus 148 VLItG~SG~GKSElALeLi~rg 169 (308)
T COG1493 148 VLITGPSGAGKSELALELIKRG 169 (308)
T ss_pred EEEECCCCCCHhHHHHHHHHhc
Confidence 7999999999999999998874
No 360
>PLN02199 shikimate kinase
Probab=74.03 E-value=7.3 Score=32.26 Aligned_cols=48 Identities=15% Similarity=0.256 Sum_probs=34.5
Q ss_pred EEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHHHcCccHHHhcC
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQNGLEMDKLLG 60 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~~~glDl~~LL~ 60 (103)
-|+++|-+||||--++..|++.++ +.++..-.-+.+.+. |..+.+++.
T Consensus 104 ~I~LIG~~GSGKSTVgr~LA~~Lg---~~fIDtD~lIe~~~~---G~sI~eIf~ 151 (303)
T PLN02199 104 SMYLVGMMGSGKTTVGKLMSKVLG---YTFFDCDTLIEQAMN---GTSVAEIFV 151 (303)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC---CCEEehHHHHHHHhc---CCCHHHHHH
Confidence 467789999999999999999985 556655555555432 666666554
No 361
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=73.76 E-value=5.9 Score=35.34 Aligned_cols=49 Identities=31% Similarity=0.531 Sum_probs=39.9
Q ss_pred EEEecCcCCchhHHHHHHHHHhcc--------------cceEEEecchhhHHHHHHHcCccHH
Q psy4713 8 LLFSGKRKSGKDFLTDYLLERIGS--------------QHCAIIRLSAPIKSHWAKQNGLEMD 56 (103)
Q Consensus 8 iL~sGKrksGKDy~a~~l~~~l~~--------------~~~~iv~iS~piK~~yA~~~glDl~ 56 (103)
-++||+.|+||--+.|.|--.+|. ....++.+..|.-+.|-.+.|+|.+
T Consensus 25 tVlTGETGAGKSIiidAl~lllG~ra~~~~VR~G~~~a~v~a~F~~~~~~~~~~L~e~gie~~ 87 (557)
T COG0497 25 TVLTGETGAGKSIIIDALGLLLGGRADASLVRHGAKRAEVEAIFDLDNPPARAWLEENGIEDD 87 (557)
T ss_pred eEEecCCCCcHhHHHHHHHHHhCCCCCcchhcCCCceeEEEEEecCCchHHHHHHHHcCCCCc
Confidence 378999999999999999999986 2345677776677778889999875
No 362
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=73.66 E-value=7.2 Score=32.12 Aligned_cols=38 Identities=16% Similarity=0.183 Sum_probs=30.9
Q ss_pred CCeEEEEEecCcCCchhHHHHHHHHHhcc--cceEEEecc
Q psy4713 3 QPKLILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRLS 40 (103)
Q Consensus 3 ~pklIiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~iS 40 (103)
.+.++|-|+|-.||||==+++.+...+.+ .++.|+.+.
T Consensus 54 ~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~D 93 (332)
T PRK09435 54 GNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVD 93 (332)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeC
Confidence 45789999999999999999999988876 356666553
No 363
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=73.63 E-value=3 Score=32.57 Aligned_cols=24 Identities=29% Similarity=0.403 Sum_probs=19.9
Q ss_pred EEEecCcCCchhHHHHHHHHHhcc
Q psy4713 8 LLFSGKRKSGKDFLTDYLLERIGS 31 (103)
Q Consensus 8 iL~sGKrksGKDy~a~~l~~~l~~ 31 (103)
||+.|.+|+||-.+|..+.+.|-.
T Consensus 25 lLl~GppGtGKTmlA~~l~~lLP~ 48 (206)
T PF01078_consen 25 LLLIGPPGTGKTMLARRLPSLLPP 48 (206)
T ss_dssp EEEES-CCCTHHHHHHHHHHCS--
T ss_pred eEEECCCCCCHHHHHHHHHHhCCC
Confidence 689999999999999999999865
No 364
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=73.55 E-value=4 Score=29.17 Aligned_cols=24 Identities=29% Similarity=0.555 Sum_probs=21.9
Q ss_pred EEEEecCcCCchhHHHHHHHHHhc
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIG 30 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~ 30 (103)
+|+|.|--||||--+++.|.+.++
T Consensus 1 ~I~ieG~~GsGKSTl~~~L~~~~~ 24 (193)
T cd01673 1 VIVVEGNIGAGKSTLAKELAEHLG 24 (193)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999999864
No 365
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=73.44 E-value=3.7 Score=33.74 Aligned_cols=25 Identities=40% Similarity=0.390 Sum_probs=22.8
Q ss_pred EEEEecCcCCchhHHHHHHHHHhcc
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIGS 31 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~~ 31 (103)
.+||+|++|+||--++..+...+..
T Consensus 47 a~L~~G~~G~GKttlA~~lA~~Llc 71 (351)
T PRK09112 47 ALLFEGPEGIGKATLAFHLANHILS 71 (351)
T ss_pred eEeeECCCCCCHHHHHHHHHHHHcC
Confidence 6899999999999999999998854
No 366
>PRK13531 regulatory ATPase RavA; Provisional
Probab=73.37 E-value=6.7 Score=34.51 Aligned_cols=52 Identities=19% Similarity=0.328 Sum_probs=33.3
Q ss_pred EEEecCcCCchhHHHHHHHHHhccc---ceEEEecchhhHHHHHHHcC-ccHHHhcCCCCc
Q psy4713 8 LLFSGKRKSGKDFLTDYLLERIGSQ---HCAIIRLSAPIKSHWAKQNG-LEMDKLLGATKY 64 (103)
Q Consensus 8 iL~sGKrksGKDy~a~~l~~~l~~~---~~~iv~iS~piK~~yA~~~g-lDl~~LL~d~~Y 64 (103)
||+.|.+|+||-.+|..++..+... ...-++++-| +.-.| +++..+-.++.|
T Consensus 42 VLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp-----~DLfG~l~i~~~~~~g~f 97 (498)
T PRK13531 42 VFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTP-----EEVFGPLSIQALKDEGRY 97 (498)
T ss_pred EEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCc-----HHhcCcHHHhhhhhcCch
Confidence 7899999999999999999987531 2233444444 24444 334444444444
No 367
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=73.33 E-value=3.9 Score=33.98 Aligned_cols=28 Identities=32% Similarity=0.516 Sum_probs=24.0
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhccc
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIGSQ 32 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~~~ 32 (103)
|. |++++|.|.|||=++...+...+.+.
T Consensus 37 ~~-i~~i~GpR~~GKTtll~~l~~~~~~~ 64 (398)
T COG1373 37 PF-IILILGPRQVGKTTLLKLLIKGLLEE 64 (398)
T ss_pred Cc-EEEEECCccccHHHHHHHHHhhCCcc
Confidence 45 99999999999999998888887544
No 368
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=73.19 E-value=4.9 Score=34.73 Aligned_cols=26 Identities=31% Similarity=0.487 Sum_probs=23.0
Q ss_pred eEEEEEecCcCCchhHHHHHHHHHhc
Q psy4713 5 KLILLFSGKRKSGKDFLTDYLLERIG 30 (103)
Q Consensus 5 klIiL~sGKrksGKDy~a~~l~~~l~ 30 (103)
.-.+||+|.+|+||.-+|..+++.+.
T Consensus 38 ~ha~Lf~Gp~G~GKTt~A~~lAk~l~ 63 (527)
T PRK14969 38 HHAYLFTGTRGVGKTTLARILAKSLN 63 (527)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 34578999999999999999999884
No 369
>PRK13768 GTPase; Provisional
Probab=72.78 E-value=7.5 Score=30.02 Aligned_cols=34 Identities=35% Similarity=0.491 Sum_probs=26.8
Q ss_pred EEEEEecCcCCchhHHHHHHHHHhcc--cceEEEec
Q psy4713 6 LILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRL 39 (103)
Q Consensus 6 lIiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~i 39 (103)
.+++|+|+.||||==++..++..+.. .++.+|-+
T Consensus 3 ~~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~ 38 (253)
T PRK13768 3 YIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNL 38 (253)
T ss_pred EEEEEECCCCccHHHHHHHHHHHHHhcCCceEEEEC
Confidence 48899999999999988888888755 35556543
No 370
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=72.77 E-value=14 Score=31.10 Aligned_cols=60 Identities=15% Similarity=0.148 Sum_probs=40.9
Q ss_pred eEEEEEecCcCCchhHHHHHHHHHhc----ccceEEEecch-----h-hHHHHHHHcCccHHHhcCCCCc
Q psy4713 5 KLILLFSGKRKSGKDFLTDYLLERIG----SQHCAIIRLSA-----P-IKSHWAKQNGLEMDKLLGATKY 64 (103)
Q Consensus 5 klIiL~sGKrksGKDy~a~~l~~~l~----~~~~~iv~iS~-----p-iK~~yA~~~glDl~~LL~d~~Y 64 (103)
.-|++|.|.+|+||=-++-.|..++. ..++.++..-. . -=+.|++..|+.+...-....+
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l 206 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDL 206 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccH
Confidence 45888999999999999999987652 23455554222 1 2356888888877655554444
No 371
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=72.73 E-value=4.2 Score=31.76 Aligned_cols=25 Identities=24% Similarity=0.515 Sum_probs=22.0
Q ss_pred EEEEecCcCCchhHHHHHHHHHhcc
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIGS 31 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~~ 31 (103)
.++|+|.+|+||=.++..+.+.+.+
T Consensus 42 ~i~I~G~~GtGKT~l~~~~~~~l~~ 66 (365)
T TIGR02928 42 NVFIYGKTGTGKTAVTKYVMKELEE 66 (365)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5799999999999999999887753
No 372
>PRK06620 hypothetical protein; Validated
Probab=72.49 E-value=3.7 Score=31.09 Aligned_cols=25 Identities=32% Similarity=0.465 Sum_probs=21.9
Q ss_pred EEEEEecCcCCchhHHHHHHHHHhc
Q psy4713 6 LILLFSGKRKSGKDFLTDYLLERIG 30 (103)
Q Consensus 6 lIiL~sGKrksGKDy~a~~l~~~l~ 30 (103)
--++|.|..||||=.++.+|.+..+
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~ 69 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSN 69 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccC
Confidence 4578999999999999999988764
No 373
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act
Probab=72.37 E-value=3.5 Score=36.96 Aligned_cols=24 Identities=29% Similarity=0.432 Sum_probs=20.7
Q ss_pred EEEEecCcCCchhHHHHHHHHHhc
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIG 30 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~ 30 (103)
.|+|||++||||--.+..+..-|.
T Consensus 90 sIiisGESGaGKTe~~K~il~yLa 113 (674)
T cd01384 90 SILVSGESGAGKTETTKMLMRYLA 113 (674)
T ss_pred eEEEECCCCCCchhHHHHHHHHHH
Confidence 577899999999998888887774
No 374
>PHA00350 putative assembly protein
Probab=72.34 E-value=5.9 Score=33.71 Aligned_cols=35 Identities=14% Similarity=0.210 Sum_probs=27.0
Q ss_pred EEEEecCcCCchhHHHHH--HHHHhcccceEEEecch
Q psy4713 7 ILLFSGKRKSGKDFLTDY--LLERIGSQHCAIIRLSA 41 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~--l~~~l~~~~~~iv~iS~ 41 (103)
|.++||+.||||-|.|=. +...+.+.+..+..|.+
T Consensus 3 I~l~tG~pGSGKT~~aV~~~i~palk~GR~V~TNI~G 39 (399)
T PHA00350 3 IYAIVGRPGSYKSYEAVVYHIIPALKDGRKVITNIPG 39 (399)
T ss_pred eEEEecCCCCchhHHHHHHHHHHHHHCCCEEEECCCC
Confidence 899999999999998754 66677665555656665
No 375
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=72.22 E-value=4 Score=35.19 Aligned_cols=25 Identities=28% Similarity=0.468 Sum_probs=22.7
Q ss_pred EEEEEecCcCCchhHHHHHHHHHhc
Q psy4713 6 LILLFSGKRKSGKDFLTDYLLERIG 30 (103)
Q Consensus 6 lIiL~sGKrksGKDy~a~~l~~~l~ 30 (103)
-.+||+|.+|+||-=+|.++++.+.
T Consensus 39 ha~Lf~Gp~G~GKTt~A~~lAk~l~ 63 (509)
T PRK14958 39 HAYLFTGTRGVGKTTISRILAKCLN 63 (509)
T ss_pred eeEEEECCCCCCHHHHHHHHHHHhc
Confidence 3679999999999999999999885
No 376
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=72.12 E-value=6.5 Score=31.50 Aligned_cols=33 Identities=24% Similarity=0.394 Sum_probs=26.4
Q ss_pred EEEEecCcCCchhHHHHHHHHHhcc--cceEEEec
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRL 39 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~i 39 (103)
||+|+||=|+||==||-.++-.+.+ .++-++|+
T Consensus 3 ~~~~~GKGGVGKTT~aaA~A~~~A~~G~rtLlvS~ 37 (305)
T PF02374_consen 3 ILFFGGKGGVGKTTVAAALALALARRGKRTLLVST 37 (305)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEES
T ss_pred EEEEecCCCCCcHHHHHHHHHHHhhCCCCeeEeec
Confidence 7899999999999999888877755 45666665
No 377
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins. In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus
Probab=72.12 E-value=3.2 Score=37.21 Aligned_cols=24 Identities=29% Similarity=0.443 Sum_probs=19.0
Q ss_pred EEEEecCcCCchhHHHHHHHHHhc
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIG 30 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~ 30 (103)
.|+|||++||||--.+..+.+-|.
T Consensus 89 sIiisGESGaGKTe~~k~il~yl~ 112 (677)
T cd01387 89 CVIISGESGSGKTEATKLILRYLA 112 (677)
T ss_pred eEEEEcCCCCCeehHHHHHHHHHH
Confidence 367799999999887777766654
No 378
>PRK13342 recombination factor protein RarA; Reviewed
Probab=72.03 E-value=7.2 Score=32.04 Aligned_cols=25 Identities=16% Similarity=0.268 Sum_probs=21.8
Q ss_pred EEEEecCcCCchhHHHHHHHHHhcc
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIGS 31 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~~ 31 (103)
-++|+|.+|+||--++..+.+.++.
T Consensus 38 ~ilL~GppGtGKTtLA~~ia~~~~~ 62 (413)
T PRK13342 38 SMILWGPPGTGKTTLARIIAGATDA 62 (413)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3677999999999999999988764
No 379
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=72.02 E-value=4.2 Score=34.83 Aligned_cols=25 Identities=24% Similarity=0.498 Sum_probs=22.6
Q ss_pred EEEEecCcCCchhHHHHHHHHHhcc
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIGS 31 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~~ 31 (103)
.+||+|.+|+||--+|.++++.+..
T Consensus 38 ~~Lf~GPpGtGKTTlA~~lA~~l~~ 62 (472)
T PRK14962 38 AYIFAGPRGTGKTTVARILAKSLNC 62 (472)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcc
Confidence 4799999999999999999998863
No 380
>PHA02624 large T antigen; Provisional
Probab=72.00 E-value=6.1 Score=35.97 Aligned_cols=37 Identities=30% Similarity=0.467 Sum_probs=30.1
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhh
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPI 43 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~pi 43 (103)
.+-++||.|..++||-+.+..|.+.|+.. +++++.|+
T Consensus 430 Kk~~il~~GPpnTGKTtf~~sLl~~L~G~---vlsVNsPt 466 (647)
T PHA02624 430 KRRYWLFKGPVNSGKTTLAAALLDLCGGK---SLNVNCPP 466 (647)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHcCCe---EEEeeCCc
Confidence 46799999999999999999999999532 44466555
No 381
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=71.92 E-value=7.8 Score=33.00 Aligned_cols=52 Identities=21% Similarity=0.299 Sum_probs=34.7
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhc-c--cceEEEecc----hhh--HHHHHHHcCccH
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIG-S--QHCAIIRLS----API--KSHWAKQNGLEM 55 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~-~--~~~~iv~iS----~pi--K~~yA~~~glDl 55 (103)
++.|++|+|..||||==++-.|+..+. . .++.+|..- ... -+.|+...|+++
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~ 158 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPV 158 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHHHHhcCCce
Confidence 467999999999999999888888764 2 345555432 111 124666666653
No 382
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=71.87 E-value=5.6 Score=35.05 Aligned_cols=36 Identities=17% Similarity=0.239 Sum_probs=29.7
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhcc--cceEEEec
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRL 39 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~i 39 (103)
+++++++.|-.++||-+++..|+..|+- ..|.++..
T Consensus 214 ~~~~~~~vglp~~GKStia~~L~~~l~~~~~~~~~~~~ 251 (664)
T PTZ00322 214 GSLIVIMVGLPGRGKTYVARQIQRYFQWNGLQSRIFIH 251 (664)
T ss_pred cceeEEecccCCCChhHHHHHHHHHHHhcCCCcEEEcc
Confidence 5789999999999999999999999864 34555544
No 383
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=71.83 E-value=17 Score=27.39 Aligned_cols=73 Identities=18% Similarity=0.181 Sum_probs=41.8
Q ss_pred eEEEEEecCcCCchhHHHHHHH-HHhcccceEEEecch-----------hh--HHHHHHHcCccHHHhcCCCCcHHHhHH
Q psy4713 5 KLILLFSGKRKSGKDFLTDYLL-ERIGSQHCAIIRLSA-----------PI--KSHWAKQNGLEMDKLLGATKYKEKYRA 70 (103)
Q Consensus 5 klIiL~sGKrksGKDy~a~~l~-~~l~~~~~~iv~iS~-----------pi--K~~yA~~~glDl~~LL~d~~YKE~~R~ 70 (103)
|+++++|| |||=+...+. ...|-....++-.+. ++ =+..|++.|+.+-.+--+. -+|.|+.
T Consensus 1 kv~v~~SG----GkDS~~al~~a~~~G~~v~~l~~~~~~~~~~~~~h~~~~e~~~~~A~~lgipl~~i~~~~-~~e~~~~ 75 (194)
T cd01994 1 KVVALISG----GKDSCYALYRALEEGHEVVALLNLTPEEGSSMMYHTVNHELLELQAEAMGIPLIRIEISG-EEEDEVE 75 (194)
T ss_pred CEEEEecC----CHHHHHHHHHHHHcCCEEEEEEEEecCCCCcccccccCHHHHHHHHHHcCCcEEEEeCCC-CchHHHH
Confidence 57899999 9995544433 233433333333311 12 2467788888765544333 4577777
Q ss_pred HHHHHHHHHhcc
Q psy4713 71 EMITWSEAERRK 82 (103)
Q Consensus 71 ~mi~wge~~R~~ 82 (103)
+|..--.+.+++
T Consensus 76 ~l~~~l~~~~~~ 87 (194)
T cd01994 76 DLKELLRKLKEE 87 (194)
T ss_pred HHHHHHHHHHHc
Confidence 776665555443
No 384
>CHL00176 ftsH cell division protein; Validated
Probab=71.73 E-value=5.1 Score=35.72 Aligned_cols=32 Identities=19% Similarity=0.311 Sum_probs=25.3
Q ss_pred EEEEecCcCCchhHHHHHHHHHhcccceEEEecch
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSA 41 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~ 41 (103)
=||+.|.+|+||-++|..++..++ +..+.+|.
T Consensus 218 gVLL~GPpGTGKT~LAralA~e~~---~p~i~is~ 249 (638)
T CHL00176 218 GVLLVGPPGTGKTLLAKAIAGEAE---VPFFSISG 249 (638)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC---CCeeeccH
Confidence 478999999999999999988764 34455543
No 385
>PLN03181 glycosyltransferase; Provisional
Probab=71.67 E-value=5.6 Score=34.87 Aligned_cols=35 Identities=14% Similarity=0.518 Sum_probs=28.0
Q ss_pred eEEEEEec------CcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHHHcCccH
Q psy4713 5 KLILLFSG------KRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQNGLEM 55 (103)
Q Consensus 5 klIiL~sG------KrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~~~glDl 55 (103)
.-|||||| +.+.|..|+..+++++ ..||+.||.++
T Consensus 128 prVViVT~Sdp~~C~~~~gD~~LlriikNR----------------~dYArrHGY~l 168 (453)
T PLN03181 128 ERVVMVTGSQPTPCKNPIGDHLLLRFFKNK----------------VDYCRIHGYDI 168 (453)
T ss_pred CCEEEEECCCCCCCCCcccHHHHHHHHHHH----------------HHHHHHhCCcE
Confidence 34788888 5678999999888876 47999999765
No 386
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=71.64 E-value=2.8 Score=27.06 Aligned_cols=21 Identities=24% Similarity=0.262 Sum_probs=16.0
Q ss_pred EEEecCcCCchhHHHHHHHHH
Q psy4713 8 LLFSGKRKSGKDFLTDYLLER 28 (103)
Q Consensus 8 iL~sGKrksGKDy~a~~l~~~ 28 (103)
|+|-|.+||||==+.+.+...
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~ 22 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGG 22 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHhcC
Confidence 678899999997666666543
No 387
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=71.58 E-value=18 Score=28.61 Aligned_cols=58 Identities=22% Similarity=0.263 Sum_probs=38.6
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhc--------ccceEEEecch--hhH--HHHHHHcCccHHHhcCC
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIG--------SQHCAIIRLSA--PIK--SHWAKQNGLEMDKLLGA 61 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~--------~~~~~iv~iS~--piK--~~yA~~~glDl~~LL~d 61 (103)
+.-|++|+|..||||==++-.+.-... ...+.-|..-+ |.. .+.|+..|.|.++++..
T Consensus 101 ~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~~~~~~g~~~~~~l~~ 170 (317)
T PRK04301 101 TQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQMAEALGLDPDEVLDN 170 (317)
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHHHHHHcCCChHhhhcc
Confidence 456899999999999877776654431 12555566555 222 24566789998887644
No 388
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=71.56 E-value=6.2 Score=32.57 Aligned_cols=42 Identities=26% Similarity=0.458 Sum_probs=32.2
Q ss_pred CCeEEEEEecCcCCchhHHHHHHHHHhcc---cceEEEecchhhH
Q psy4713 3 QPKLILLFSGKRKSGKDFLTDYLLERIGS---QHCAIIRLSAPIK 44 (103)
Q Consensus 3 ~pklIiL~sGKrksGKDy~a~~l~~~l~~---~~~~iv~iS~piK 44 (103)
.|+=+|+|+|..||||==....+...+.. ....|+.+-+|+-
T Consensus 132 ~~~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE 176 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIE 176 (358)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCce
Confidence 35678999999999997777777666643 2457888999984
No 389
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=71.45 E-value=4.4 Score=28.35 Aligned_cols=26 Identities=19% Similarity=0.337 Sum_probs=19.3
Q ss_pred cCCchhHHHHHHHHHhcc--cceEEEec
Q psy4713 14 RKSGKDFLTDYLLERIGS--QHCAIIRL 39 (103)
Q Consensus 14 rksGKDy~a~~l~~~l~~--~~~~iv~i 39 (103)
=||||.|++-.|...|.. ....|+.|
T Consensus 32 ~GsG~GyLs~~La~~l~~~~~~~~v~~i 59 (141)
T PF13679_consen 32 LGSGKGYLSRALAHLLCNSSPNLRVLGI 59 (141)
T ss_pred eCCChhHHHHHHHHHHHhcCCCCeEEEE
Confidence 389999999999997643 34555544
No 390
>KOG1970|consensus
Probab=71.45 E-value=5 Score=36.42 Aligned_cols=37 Identities=32% Similarity=0.496 Sum_probs=29.0
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhh
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPI 43 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~pi 43 (103)
+.-|+|+||.+||||-=...+|.+.+| ..++--|.|+
T Consensus 109 ~~~iLLltGPsGcGKSTtvkvLskelg---~~~~Ew~Npi 145 (634)
T KOG1970|consen 109 GSRILLLTGPSGCGKSTTVKVLSKELG---YQLIEWSNPI 145 (634)
T ss_pred CceEEEEeCCCCCCchhHHHHHHHhhC---ceeeeecCCc
Confidence 346999999999999999999999986 4444444444
No 391
>PF07475 Hpr_kinase_C: HPr Serine kinase C-terminal domain; InterPro: IPR011104 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents the C-terminal kinase domain of Hpr Serine/threonine kinase PtsK. This kinase is the sensor in a multicomponent phosphorelay system in control of carbon catabolic repression in bacteria []. This kinase in unusual in that it recognises the tertiary structure of its target and is a member of a novel family unrelated to any previously described protein phosphorylating enzymes []. X-ray analysis of the full-length crystalline enzyme from Staphylococcus xylosus at a resolution of 1.95 A shows the enzyme to consist of two clearly separated domains that are assembled in a hexameric structure resembling a three-bladed propeller [].; GO: 0000155 two-component sensor activity, 0004672 protein kinase activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006109 regulation of carbohydrate metabolic process; PDB: 2QMH_C 1KKM_B 1KKL_C 1JB1_A 3TQF_B 1KNX_B 1KO7_A.
Probab=71.34 E-value=7 Score=29.92 Aligned_cols=21 Identities=33% Similarity=0.449 Sum_probs=19.7
Q ss_pred EEEecCcCCchhHHHHHHHHH
Q psy4713 8 LLFSGKRKSGKDFLTDYLLER 28 (103)
Q Consensus 8 iL~sGKrksGKDy~a~~l~~~ 28 (103)
|||+|++|+||-=+|-.|.++
T Consensus 21 VLi~G~SG~GKS~lAl~Li~r 41 (171)
T PF07475_consen 21 VLITGPSGIGKSELALELIKR 41 (171)
T ss_dssp EEEEESTTSSHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHC
Confidence 799999999999999999887
No 392
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins. Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea
Probab=71.30 E-value=3.8 Score=36.83 Aligned_cols=24 Identities=29% Similarity=0.535 Sum_probs=20.0
Q ss_pred EEEEecCcCCchhHHHHHHHHHhc
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIG 30 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~ 30 (103)
.|+|||++||||=-.+..+.+-|.
T Consensus 96 sIiisGESGAGKTet~K~il~yL~ 119 (692)
T cd01385 96 CIVISGESGSGKTESTNFLIHHLT 119 (692)
T ss_pred eEEEecCCCCCchHHHHHHHHHHH
Confidence 478899999999988888777664
No 393
>KOG3354|consensus
Probab=71.28 E-value=5.9 Score=31.14 Aligned_cols=31 Identities=29% Similarity=0.387 Sum_probs=27.0
Q ss_pred CCCCeEEEEEecCcCCchhHHHHHHHHHhcc
Q psy4713 1 MTQPKLILLFSGKRKSGKDFLTDYLLERIGS 31 (103)
Q Consensus 1 ~~~pklIiL~sGKrksGKDy~a~~l~~~l~~ 31 (103)
|+.-+.+|+|-|-+||||-=++..|.+.|+-
T Consensus 8 ~~~~k~~i~vmGvsGsGKSTigk~L~~~l~~ 38 (191)
T KOG3354|consen 8 MGPFKYVIVVMGVSGSGKSTIGKALSEELGL 38 (191)
T ss_pred cCCCceeEEEEecCCCChhhHHHHHHHHhCC
Confidence 4456789999999999999999999999863
No 394
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=71.20 E-value=6.8 Score=32.16 Aligned_cols=38 Identities=24% Similarity=0.330 Sum_probs=29.1
Q ss_pred EEEEEecCcCCchhHHHHHHHHHhcc--cceEEEecchhh
Q psy4713 6 LILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRLSAPI 43 (103)
Q Consensus 6 lIiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~iS~pi 43 (103)
.-|||+|..||||=-+.+.|...+.. ...+|+.|-+|.
T Consensus 145 ~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~ 184 (323)
T PRK13833 145 LNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTA 184 (323)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCc
Confidence 34789999999999999999888732 345677776654
No 395
>KOG2878|consensus
Probab=71.02 E-value=3.3 Score=33.99 Aligned_cols=27 Identities=33% Similarity=0.370 Sum_probs=23.9
Q ss_pred eEEEEEecCcCCchhHHHHHHHHHhcc
Q psy4713 5 KLILLFSGKRKSGKDFLTDYLLERIGS 31 (103)
Q Consensus 5 klIiL~sGKrksGKDy~a~~l~~~l~~ 31 (103)
.+||-|||.-||||-+++-.|-..+++
T Consensus 31 Pl~igfSgPQGsGKstl~~ald~~lt~ 57 (282)
T KOG2878|consen 31 PLVIGFSGPQGSGKSTLVFALDYKLTK 57 (282)
T ss_pred cEEEEecCCCCCCceeehhhhHHHHHH
Confidence 689999999999999999888777765
No 396
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=70.86 E-value=5.5 Score=31.93 Aligned_cols=33 Identities=27% Similarity=0.422 Sum_probs=26.5
Q ss_pred EEEecCcCCchhHHHHHHHHHhcccceEEEecchhh
Q psy4713 8 LLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPI 43 (103)
Q Consensus 8 iL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~pi 43 (103)
+||.|..|.||==+|.++++.++ +.+..+|+|.
T Consensus 53 ~lf~GPPG~GKTTLA~IIA~e~~---~~~~~~sg~~ 85 (233)
T PF05496_consen 53 MLFYGPPGLGKTTLARIIANELG---VNFKITSGPA 85 (233)
T ss_dssp EEEESSTTSSHHHHHHHHHHHCT-----EEEEECCC
T ss_pred EEEECCCccchhHHHHHHHhccC---CCeEeccchh
Confidence 78999999999999999999986 3344567764
No 397
>PRK13764 ATPase; Provisional
Probab=70.80 E-value=5.9 Score=35.38 Aligned_cols=38 Identities=18% Similarity=0.211 Sum_probs=30.1
Q ss_pred EEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhh
Q psy4713 6 LILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPI 43 (103)
Q Consensus 6 lIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~pi 43 (103)
--|||+|..||||=-++..|...+......|+.|-+|.
T Consensus 258 ~~ILIsG~TGSGKTTll~AL~~~i~~~~riV~TiEDp~ 295 (602)
T PRK13764 258 EGILIAGAPGAGKSTFAQALAEFYADMGKIVKTMESPR 295 (602)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEECCCc
Confidence 34799999999999999999988876555555777663
No 398
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=70.72 E-value=6.8 Score=27.59 Aligned_cols=33 Identities=21% Similarity=0.311 Sum_probs=26.9
Q ss_pred EEEEEecCcCCchhHHHHHHHHHhcc--cceEEEe
Q psy4713 6 LILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIR 38 (103)
Q Consensus 6 lIiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~ 38 (103)
+|.+.|+|-|+||=.+|-.|+..+.+ .++.+|-
T Consensus 1 vi~v~s~kgG~GKTt~a~~LA~~la~~g~~vllvD 35 (169)
T cd02037 1 VIAVMSGKGGVGKSTVAVNLALALAKLGYKVGLLD 35 (169)
T ss_pred CEEEecCCCcCChhHHHHHHHHHHHHcCCcEEEEe
Confidence 47889999999999999999998866 4555553
No 399
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=70.63 E-value=6 Score=28.68 Aligned_cols=39 Identities=31% Similarity=0.330 Sum_probs=27.7
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhh
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPI 43 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~pi 43 (103)
+.-+++|+|..||||-=+...|...+. ....++.|-+|.
T Consensus 24 ~g~~i~I~G~tGSGKTTll~aL~~~i~-~~~~~i~ied~~ 62 (186)
T cd01130 24 ARKNILISGGTGSGKTTLLNALLAFIP-PDERIITIEDTA 62 (186)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcC-CCCCEEEECCcc
Confidence 456789999999999877777766654 344566665553
No 400
>KOG0737|consensus
Probab=70.61 E-value=6.1 Score=33.96 Aligned_cols=48 Identities=17% Similarity=0.317 Sum_probs=38.5
Q ss_pred CCCCeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHH
Q psy4713 1 MTQPKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAK 49 (103)
Q Consensus 1 ~~~pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~ 49 (103)
|..|...||+-|..|+||--||..++++.|. +..=|+.|.++=+.|.+
T Consensus 123 Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga-~fInv~~s~lt~KWfgE 170 (386)
T KOG0737|consen 123 LLRPPKGILLYGPPGTGKTMLAKAIAKEAGA-NFINVSVSNLTSKWFGE 170 (386)
T ss_pred cccCCccceecCCCCchHHHHHHHHHHHcCC-CcceeeccccchhhHHH
Confidence 3567788899999999999999999999874 44556677777777765
No 401
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=70.51 E-value=7.4 Score=27.86 Aligned_cols=58 Identities=16% Similarity=0.288 Sum_probs=34.4
Q ss_pred CCeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHH----HHcCccHHHhcCC
Q psy4713 3 QPKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWA----KQNGLEMDKLLGA 61 (103)
Q Consensus 3 ~pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA----~~~glDl~~LL~d 61 (103)
++--||+++|.=||||=-.+..+...||... .|.|=+-.+=.+|- .-+-.|+=||-+.
T Consensus 13 ~~g~vi~L~GdLGaGKTtf~r~l~~~lg~~~-~V~SPTF~l~~~Y~~~~~~l~H~DLYRl~~~ 74 (123)
T PF02367_consen 13 KPGDVILLSGDLGAGKTTFVRGLARALGIDE-EVTSPTFSLVNEYEGGNIPLYHFDLYRLEDP 74 (123)
T ss_dssp SS-EEEEEEESTTSSHHHHHHHHHHHTT--S-----TTTTSEEEEEETTEEEEEEE-TT-SST
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCCCC-CcCCCCeEEEEEecCCCceEEEeeccccCCH
Confidence 3567999999999999999999999997532 44444444444442 2233455555443
No 402
>TIGR00679 hpr-ser Hpr(Ser) kinase/phosphatase. The hprK gene of Enterococcus faecalis encodes a bifunctional enzyme: the HPr kinase/phosphatase
Probab=70.28 E-value=6.7 Score=32.43 Aligned_cols=66 Identities=24% Similarity=0.395 Sum_probs=44.2
Q ss_pred EEEEEecCcCCchhHHHHHHHHH---hcc-cceEEEec--------chhhHHHHHHHcCc---cHHHhcCCCCcHHHhHH
Q psy4713 6 LILLFSGKRKSGKDFLTDYLLER---IGS-QHCAIIRL--------SAPIKSHWAKQNGL---EMDKLLGATKYKEKYRA 70 (103)
Q Consensus 6 lIiL~sGKrksGKDy~a~~l~~~---l~~-~~~~iv~i--------S~piK~~yA~~~gl---Dl~~LL~d~~YKE~~R~ 70 (103)
.-|||+|++|+||-=+|-.|.++ |-. +.+.+.+. +-++=+.+-+..|+ |...+.+.++.+.+-+-
T Consensus 147 ~gvli~G~sg~GKS~lal~Li~rg~~lvaDD~~~~~~~~~~~L~g~~p~~l~~~iEvRG~GIi~v~~~fG~~a~~~~~~I 226 (304)
T TIGR00679 147 VGVLITGKSGVGKSETALELINRGHRLVADDAVEIYRLNGNRLFGRAQELIKHFMEIRGLGIINVERLYGLGITRERKEI 226 (304)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHcCCceeecCeEEEEEecCCEEEEeCChhhCCcEEEeCcEEEEchhhcCccceecCCEE
Confidence 35899999999999999988887 222 44444444 22333455555554 77778787777776665
Q ss_pred H
Q psy4713 71 E 71 (103)
Q Consensus 71 ~ 71 (103)
+
T Consensus 227 ~ 227 (304)
T TIGR00679 227 Q 227 (304)
T ss_pred E
Confidence 4
No 403
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins. Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of
Probab=70.24 E-value=4.3 Score=36.63 Aligned_cols=23 Identities=26% Similarity=0.463 Sum_probs=17.9
Q ss_pred EEEEecCcCCchhHHHHHHHHHh
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERI 29 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l 29 (103)
.|+|||++||||=-.+..+..-|
T Consensus 93 sIiisGESGaGKTes~K~il~yL 115 (717)
T cd01382 93 SIIVSGESGAGKTENTKFVLRYL 115 (717)
T ss_pred eEEEecCCCCChhHHHHHHHHHH
Confidence 46789999999987777665554
No 404
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=70.18 E-value=9 Score=32.84 Aligned_cols=52 Identities=13% Similarity=0.148 Sum_probs=35.7
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhcc--cceEEEecchhhH-------HHHHHHcCccHH
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRLSAPIK-------SHWAKQNGLEMD 56 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~iS~piK-------~~yA~~~glDl~ 56 (103)
++.||+|.|..||||==.+..|+..+.. .++.+|.. ||-. +.||+..|+.+-
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~-D~~R~aA~eQLk~~a~~~~vp~~ 159 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCA-DTFRAGAFDQLKQNATKARIPFY 159 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcC-cccchhHHHHHHHHhhccCCeEE
Confidence 4679999999999999888888877754 34555443 2222 457776666543
No 405
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=70.00 E-value=4.5 Score=33.37 Aligned_cols=39 Identities=23% Similarity=0.427 Sum_probs=31.1
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhh
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPI 43 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~pi 43 (103)
++.-|||+|..||||==+.+.|...+.. ..+++.|-+|.
T Consensus 161 ~~~nilI~G~tGSGKTTll~aLl~~i~~-~~rivtiEd~~ 199 (344)
T PRK13851 161 GRLTMLLCGPTGSGKTTMSKTLISAIPP-QERLITIEDTL 199 (344)
T ss_pred cCCeEEEECCCCccHHHHHHHHHcccCC-CCCEEEECCCc
Confidence 4567999999999999999998887754 45677777664
No 406
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=69.73 E-value=13 Score=26.02 Aligned_cols=24 Identities=21% Similarity=0.303 Sum_probs=17.4
Q ss_pred EEEEEecCcCCchhHHHHHHHHHh
Q psy4713 6 LILLFSGKRKSGKDFLTDYLLERI 29 (103)
Q Consensus 6 lIiL~sGKrksGKDy~a~~l~~~l 29 (103)
.|.+|+|..|+||=.+.-.+...+
T Consensus 18 ~~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 18 GITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp E-EEEE-STTSSHHHHHHHHHHHH
T ss_pred CCEEEECCCCCChHHHHHHHHHHh
Confidence 389999999999997666666555
No 407
>PLN02165 adenylate isopentenyltransferase
Probab=69.60 E-value=5.6 Score=33.15 Aligned_cols=29 Identities=24% Similarity=0.266 Sum_probs=25.2
Q ss_pred CCCeEEEEEecCcCCchhHHHHHHHHHhc
Q psy4713 2 TQPKLILLFSGKRKSGKDFLTDYLLERIG 30 (103)
Q Consensus 2 ~~pklIiL~sGKrksGKDy~a~~l~~~l~ 30 (103)
.++.-||+|.|..+|||==++..|+..++
T Consensus 40 ~~~g~iivIiGPTGSGKStLA~~LA~~l~ 68 (334)
T PLN02165 40 NCKDKVVVIMGATGSGKSRLSVDLATRFP 68 (334)
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHHHHcC
Confidence 34555899999999999999999999986
No 408
>PF09140 MipZ: ATPase MipZ; InterPro: IPR015223 Cell division in bacteria is facilitated by a polymeric ring structure, the Z ring, composed of tubulin-like FtsZ protofilaments. Correct positioning of the division plane is a prerequisite for the generation of daughter cells with a normal chromosome complement. In Caulobacter crescentus MipZ, an essential protein, coordinates and regulates the assembly of the FtsZ cytokinetic ring during cell division. MipZ, forms a complex with the partitioning protein ParB near the origin of replication and localizes with the duplicated origin regions to the cell poles. MipZ also directly interferes with FtsZ polymerisation, thereby restricting FtsZ ring formation to mid-cell, the region of lowest MipZ concentration. In eukaryotes members of this entry belong to the Mrp/NBP35 ATP-binding protein family, and specifically the NUBP2/CFD1 subfamily. This includes the cytosolic Fe-S cluster assembly factor Cfd1, which is a component of the cytosolic iron-sulphur (Fe/S) protein assembly machinery. This protein is required for maturation of extra-mitochondrial Fe/S proteins. It may bind and transfer a labile 4Fe-4S cluster to target apoproteins. Cfd1 is also required for biogenesis and export of both ribosomal subunits, suggesting a role in assembly of the Fe/S clusters in RLI1, a protein which performs rRNA processing and ribosome export. ; PDB: 2XIT_B 2XJ4_A 2XJ9_A.
Probab=69.55 E-value=14 Score=30.15 Aligned_cols=52 Identities=25% Similarity=0.517 Sum_probs=33.1
Q ss_pred eEEEEEecCcCCchhHHHHHHHHHhcc--cceEEEec--chh-------hHHHHHHHcCccHH
Q psy4713 5 KLILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRL--SAP-------IKSHWAKQNGLEMD 56 (103)
Q Consensus 5 klIiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~i--S~p-------iK~~yA~~~glDl~ 56 (103)
|+|++-|||=|+||-=+|-.++-.|.. .++.++-+ -+| .+..|++..|+++.
T Consensus 1 HiIvV~sgKGGvGKSTva~~lA~aLa~~G~kVg~lD~Di~q~S~~r~l~nr~~~~~~~gi~Lp 63 (261)
T PF09140_consen 1 HIIVVGSGKGGVGKSTVAVNLAVALARMGKKVGLLDLDIRQPSLPRYLENRAAWAQRDGIELP 63 (261)
T ss_dssp EEEEEE-SSTTTTHHHHHHHHHHHHHCTT--EEEEE--TTT-HHHHHHHHHHHHHHHHT----
T ss_pred CEEEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCCHHHHHhccchhHHhcCcccC
Confidence 689999999999999999999988876 34444322 122 35677777787754
No 409
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=69.45 E-value=6.9 Score=32.31 Aligned_cols=45 Identities=24% Similarity=0.370 Sum_probs=33.6
Q ss_pred eEEEEEecCcCCchhHHHHHHHHHhccc-----ceEE-----EecchhhHHHHHH
Q psy4713 5 KLILLFSGKRKSGKDFLTDYLLERIGSQ-----HCAI-----IRLSAPIKSHWAK 49 (103)
Q Consensus 5 klIiL~sGKrksGKDy~a~~l~~~l~~~-----~~~i-----v~iS~piK~~yA~ 49 (103)
+-+|+|.|..+|||-.+|-.|+++++.. ...| |.=.-|+.++.+.
T Consensus 3 ~~~i~I~GPTAsGKT~lai~LAk~~~~eIIs~DSmQvYr~mdIGTAKps~~e~~~ 57 (308)
T COG0324 3 PKLIVIAGPTASGKTALAIALAKRLGGEIISLDSMQVYRGLDIGTAKPSLEELAG 57 (308)
T ss_pred ccEEEEECCCCcCHHHHHHHHHHHcCCcEEecchhhhcCCCcccCCCCCHHHHcC
Confidence 4578899999999999999999999762 2222 3335677777765
No 410
>cd01379 MYSc_type_III Myosin motor domain, type III myosins. Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the
Probab=69.28 E-value=4.8 Score=35.97 Aligned_cols=23 Identities=26% Similarity=0.465 Sum_probs=18.5
Q ss_pred EEEEecCcCCchhHHHHHHHHHh
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERI 29 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l 29 (103)
.|+|||++||||=-.+..+..-|
T Consensus 88 sIiisGESGsGKTet~K~l~~yL 110 (653)
T cd01379 88 CIVISGESGSGKTESAHLLVQQL 110 (653)
T ss_pred eEEEecCCCCCchHHHHHHHHHH
Confidence 47889999999987777766665
No 411
>PLN03025 replication factor C subunit; Provisional
Probab=69.24 E-value=5.6 Score=31.34 Aligned_cols=22 Identities=27% Similarity=0.329 Sum_probs=20.4
Q ss_pred EEEecCcCCchhHHHHHHHHHh
Q psy4713 8 LLFSGKRKSGKDFLTDYLLERI 29 (103)
Q Consensus 8 iL~sGKrksGKDy~a~~l~~~l 29 (103)
+||+|.+|+||--++..+++.+
T Consensus 37 lll~Gp~G~GKTtla~~la~~l 58 (319)
T PLN03025 37 LILSGPPGTGKTTSILALAHEL 58 (319)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 5789999999999999999887
No 412
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=69.04 E-value=5.1 Score=35.77 Aligned_cols=25 Identities=28% Similarity=0.481 Sum_probs=22.7
Q ss_pred EEEEEecCcCCchhHHHHHHHHHhc
Q psy4713 6 LILLFSGKRKSGKDFLTDYLLERIG 30 (103)
Q Consensus 6 lIiL~sGKrksGKDy~a~~l~~~l~ 30 (103)
-.+||+|.+|+||--++.++++.|.
T Consensus 39 ha~Lf~Gp~GvGKTtlAr~lAk~Ln 63 (618)
T PRK14951 39 HAYLFTGTRGVGKTTVSRILAKSLN 63 (618)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3689999999999999999999885
No 413
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=68.97 E-value=8.2 Score=32.95 Aligned_cols=36 Identities=14% Similarity=0.185 Sum_probs=27.9
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhcc--cceEEEec
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRL 39 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~i 39 (103)
++.+|+|+|..||||=-.+-.|+..+.+ .++.+|..
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~ 131 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAA 131 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecC
Confidence 4568888999999999999999888865 34555443
No 414
>TIGR00420 trmU tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase. tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (trmU, asuE, or mnmA) is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine (mnm5s2U34) present in the wobble position of some tRNAs. This enzyme appears not to occur in the Archaea.
Probab=68.93 E-value=32 Score=28.31 Aligned_cols=79 Identities=16% Similarity=0.301 Sum_probs=46.6
Q ss_pred eEEEEEecCcCCchhH--HHHHHHHHhcccceEEEecc----------------hhhH--HHHHHHcCccHHHhcCCCCc
Q psy4713 5 KLILLFSGKRKSGKDF--LTDYLLERIGSQHCAIIRLS----------------APIK--SHWAKQNGLEMDKLLGATKY 64 (103)
Q Consensus 5 klIiL~sGKrksGKDy--~a~~l~~~l~~~~~~iv~iS----------------~piK--~~yA~~~glDl~~LL~d~~Y 64 (103)
+++|++|| |||= ++.++.+. + ..+..+-+. ..+. +.+|+..|+.+.-+ .+
T Consensus 2 kVlValSG----GvDSsv~a~lL~~~-G-~~V~~v~~~~~~~~~~~~~~~c~~~~~~~~a~~va~~lgIp~~vi----d~ 71 (352)
T TIGR00420 2 KVIVGLSG----GVDSSVSAYLLKQQ-G-YEVVGVFMKNWEEDDKNDGHGCTSAEDLRDAQAICEKLGIPLEKV----NF 71 (352)
T ss_pred eEEEEEeC----CHHHHHHHHHHHHc-C-CeEEEEEEEcccccccccccCcCCHHHHHHHHHHHHHcCCCEEEE----EC
Confidence 78999998 9994 33333332 3 344444441 1122 46778888876543 34
Q ss_pred HHHhHHHHHHHH----HHHhccChhhhHHHHHH
Q psy4713 65 KEKYRAEMITWS----EAERRKDNGCFIRSAIE 93 (103)
Q Consensus 65 KE~~R~~mi~wg----e~~R~~D~g~Fcr~~~~ 93 (103)
.|.|+.+.+..+ ...+..+|-++|...++
T Consensus 72 ~~~f~~~v~~~~~~~y~~g~tpnpC~~Cnr~iK 104 (352)
T TIGR00420 72 QKEYWNKVFEPFIQEYKEGRTPNPDILCNKFIK 104 (352)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCcchhhhHHHH
Confidence 455555555443 33466789999987664
No 415
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=68.90 E-value=6.9 Score=34.43 Aligned_cols=25 Identities=32% Similarity=0.458 Sum_probs=22.6
Q ss_pred EEEEEecCcCCchhHHHHHHHHHhc
Q psy4713 6 LILLFSGKRKSGKDFLTDYLLERIG 30 (103)
Q Consensus 6 lIiL~sGKrksGKDy~a~~l~~~l~ 30 (103)
-.+||+|.+|+||--+|..++..+.
T Consensus 39 ha~Lf~Gp~GvGKTTlAr~lAk~L~ 63 (546)
T PRK14957 39 HAYLFTGTRGVGKTTLGRLLAKCLN 63 (546)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3679999999999999999999875
No 416
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=68.74 E-value=6.7 Score=33.23 Aligned_cols=36 Identities=17% Similarity=0.207 Sum_probs=27.5
Q ss_pred EEEEEecCcCCchhHHHHHHHHHhcccceEEEecch
Q psy4713 6 LILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSA 41 (103)
Q Consensus 6 lIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~ 41 (103)
--++|.|.+|+||=.++..+...+......|+-++.
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~ 177 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRS 177 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeH
Confidence 346789999999999999999987654455555554
No 417
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=68.61 E-value=9.6 Score=29.66 Aligned_cols=38 Identities=32% Similarity=0.566 Sum_probs=29.7
Q ss_pred EEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHHHcCc
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQNGL 53 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~~~gl 53 (103)
.|+|||-.|.||-=+++.|. .+| -.+++++ ++|+++|+
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~lg---~~~i~l~-----el~~e~~~ 39 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-ELG---YKVIELN-----ELAKENGL 39 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-HhC---CceeeHH-----HHHHhcCC
Confidence 58999999999999999999 665 3444554 56777776
No 418
>cd01380 MYSc_type_V Myosin motor domain, type V myosins. Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an act
Probab=68.58 E-value=4.8 Score=36.10 Aligned_cols=24 Identities=21% Similarity=0.502 Sum_probs=19.1
Q ss_pred EEEEecCcCCchhHHHHHHHHHhc
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIG 30 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~ 30 (103)
.|+|||++||||=-.+..+..-|.
T Consensus 88 sIiiSGESGaGKTes~K~i~~yLa 111 (691)
T cd01380 88 SIIVSGESGAGKTVSAKYIMRYFA 111 (691)
T ss_pred eEEEEcCCCCCchHHHHHHHHHHH
Confidence 477899999999877777666653
No 419
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=68.58 E-value=9.6 Score=26.85 Aligned_cols=27 Identities=26% Similarity=0.290 Sum_probs=21.9
Q ss_pred eEEEEEecCcCCchhHHHHHHHHHhcc
Q psy4713 5 KLILLFSGKRKSGKDFLTDYLLERIGS 31 (103)
Q Consensus 5 klIiL~sGKrksGKDy~a~~l~~~l~~ 31 (103)
.-+.+|+|.+|+||=.++-.+...+..
T Consensus 32 g~l~~i~g~~g~GKT~~~~~l~~~~~~ 58 (193)
T PF13481_consen 32 GELTLIAGPPGSGKTTLALQLAAALAT 58 (193)
T ss_dssp TSEEEEEECSTSSHHHHHHHHHHHHHT
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 347899999999999988888776643
No 420
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins. Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr
Probab=68.45 E-value=4.3 Score=36.32 Aligned_cols=24 Identities=25% Similarity=0.447 Sum_probs=19.3
Q ss_pred EEEEecCcCCchhHHHHHHHHHhc
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIG 30 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~ 30 (103)
.|+|||++||||=--+..+..-|.
T Consensus 88 sIiisGESGaGKTes~K~i~~yLa 111 (671)
T cd01381 88 CIIISGESGAGKTESTKLILQYLA 111 (671)
T ss_pred eEEEEcCCCCCeehHHHHHHHHHH
Confidence 467899999999888877766654
No 421
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=68.41 E-value=15 Score=27.62 Aligned_cols=53 Identities=11% Similarity=0.154 Sum_probs=36.3
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhc---ccceEEEecchhhHHHH----HHHcCccHH
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIG---SQHCAIIRLSAPIKSHW----AKQNGLEMD 56 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~---~~~~~iv~iS~piK~~y----A~~~glDl~ 56 (103)
+.-+++|+|..|+||=.++..+...+. ...+..+++..|..+.. +...|.++.
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E~~~~~~~~r~~~~~~~~~~~ 88 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEEPVVRTARRLLGQYAGKRLH 88 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEcccCHHHHHHHHHHHHhCCCcc
Confidence 345788999999999988877766542 25788888877654443 333455554
No 422
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=68.12 E-value=7.3 Score=32.95 Aligned_cols=26 Identities=31% Similarity=0.456 Sum_probs=23.1
Q ss_pred eEEEEEecCcCCchhHHHHHHHHHhc
Q psy4713 5 KLILLFSGKRKSGKDFLTDYLLERIG 30 (103)
Q Consensus 5 klIiL~sGKrksGKDy~a~~l~~~l~ 30 (103)
.-.+||+|..|+||.-+|..++..+.
T Consensus 39 ~ha~Lf~Gp~G~GKtt~A~~lAk~l~ 64 (451)
T PRK06305 39 AHAYLFSGIRGTGKTTLARIFAKALN 64 (451)
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 34688999999999999999999885
No 423
>CHL00195 ycf46 Ycf46; Provisional
Probab=68.11 E-value=5.6 Score=34.34 Aligned_cols=24 Identities=21% Similarity=0.282 Sum_probs=21.9
Q ss_pred EEEEecCcCCchhHHHHHHHHHhc
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIG 30 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~ 30 (103)
=||+.|..|+||-.+|..+++.++
T Consensus 261 GILL~GPpGTGKTllAkaiA~e~~ 284 (489)
T CHL00195 261 GLLLVGIQGTGKSLTAKAIANDWQ 284 (489)
T ss_pred eEEEECCCCCcHHHHHHHHHHHhC
Confidence 468889999999999999999986
No 424
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=68.06 E-value=8.6 Score=31.95 Aligned_cols=25 Identities=16% Similarity=0.279 Sum_probs=23.0
Q ss_pred EEEEecCcCCchhHHHHHHHHHhcc
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIGS 31 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~~ 31 (103)
-||++|..|+||=-++..++.+++-
T Consensus 66 ~ilL~G~pGtGKTtla~~lA~~l~~ 90 (327)
T TIGR01650 66 RVMVQGYHGTGKSTHIEQIAARLNW 90 (327)
T ss_pred cEEEEeCCCChHHHHHHHHHHHHCC
Confidence 3889999999999999999999974
No 425
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=67.96 E-value=10 Score=27.83 Aligned_cols=28 Identities=25% Similarity=0.291 Sum_probs=24.3
Q ss_pred CCeEEEEEecCcCCchhHHHHHHHHHhc
Q psy4713 3 QPKLILLFSGKRKSGKDFLTDYLLERIG 30 (103)
Q Consensus 3 ~pklIiL~sGKrksGKDy~a~~l~~~l~ 30 (103)
..++|.++|+|.|+||=.++-.|+..+.
T Consensus 34 ~~~vi~v~s~kgG~GkSt~a~nLA~~la 61 (207)
T TIGR03018 34 NNNLIMVTSSLPGEGKSFTAINLAISLA 61 (207)
T ss_pred CCeEEEEECCCCCCCHHHHHHHHHHHHH
Confidence 3568888889999999999999998875
No 426
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=67.91 E-value=5.7 Score=34.33 Aligned_cols=25 Identities=28% Similarity=0.391 Sum_probs=22.1
Q ss_pred EEEEEecCcCCchhHHHHHHHHHhc
Q psy4713 6 LILLFSGKRKSGKDFLTDYLLERIG 30 (103)
Q Consensus 6 lIiL~sGKrksGKDy~a~~l~~~l~ 30 (103)
.=||+-|..||||-++|.-|+..|.
T Consensus 98 SNILLiGPTGsGKTlLAqTLAk~Ln 122 (408)
T COG1219 98 SNILLIGPTGSGKTLLAQTLAKILN 122 (408)
T ss_pred ccEEEECCCCCcHHHHHHHHHHHhC
Confidence 3467789999999999999999985
No 427
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=67.75 E-value=7.9 Score=30.97 Aligned_cols=47 Identities=23% Similarity=0.405 Sum_probs=34.5
Q ss_pred EEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHHH---cCccHH
Q psy4713 6 LILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQ---NGLEMD 56 (103)
Q Consensus 6 lIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~~---~glDl~ 56 (103)
+||-|=|.++|||.=++..+++.||=. .- -||.+=|.+|-. +|.|++
T Consensus 5 ~~IAIDGPagsGKsTvak~lA~~Lg~~-yl---dTGamYRa~a~~~l~~~~~~~ 54 (222)
T COG0283 5 IIIAIDGPAGSGKSTVAKILAEKLGFH-YL---DTGAMYRAVALAALKHGVDLD 54 (222)
T ss_pred eEEEEeCCCccChHHHHHHHHHHhCCC-ee---cccHHHHHHHHHHHHcCCCCc
Confidence 899999999999999999999999841 11 355555555443 555543
No 428
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=67.70 E-value=20 Score=32.71 Aligned_cols=64 Identities=19% Similarity=0.318 Sum_probs=42.8
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhccc-------ceEEEecchhhHHHHHHHcCccHHHhcCCCCcHHHhHHHHHHHH
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIGSQ-------HCAIIRLSAPIKSHWAKQNGLEMDKLLGATKYKEKYRAEMITWS 76 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~~~-------~~~iv~iS~piK~~yA~~~glDl~~LL~d~~YKE~~R~~mi~wg 76 (103)
.+.-+++.|.+|+||=.+++.|..++... ...++.+ |+..|+....|+-.....+...+
T Consensus 193 ~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l--------------~~~~l~a~~~~~g~~e~~l~~~l 258 (852)
T TIGR03346 193 TKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLAL--------------DMGALIAGAKYRGEFEERLKAVL 258 (852)
T ss_pred CCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEe--------------eHHHHhhcchhhhhHHHHHHHHH
Confidence 44556789999999999999999998541 3344443 45566655566655555666666
Q ss_pred HHHhc
Q psy4713 77 EAERR 81 (103)
Q Consensus 77 e~~R~ 81 (103)
++.++
T Consensus 259 ~~~~~ 263 (852)
T TIGR03346 259 NEVTK 263 (852)
T ss_pred HHHHh
Confidence 55543
No 429
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=67.67 E-value=10 Score=27.72 Aligned_cols=27 Identities=30% Similarity=0.394 Sum_probs=24.0
Q ss_pred eEEEEEecCcCCchhHHHHHHHHHhcc
Q psy4713 5 KLILLFSGKRKSGKDFLTDYLLERIGS 31 (103)
Q Consensus 5 klIiL~sGKrksGKDy~a~~l~~~l~~ 31 (103)
++|.++++|-|+||=-+|-.|+..|.+
T Consensus 1 ~ii~v~~~KGGvGKTt~a~~LA~~la~ 27 (251)
T TIGR01969 1 RIITIASGKGGTGKTTITANLGVALAK 27 (251)
T ss_pred CEEEEEcCCCCCcHHHHHHHHHHHHHH
Confidence 478999999999999999999888854
No 430
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=67.52 E-value=9.5 Score=28.84 Aligned_cols=25 Identities=24% Similarity=0.271 Sum_probs=21.5
Q ss_pred EEEEecCcCCchhHHHHHHHHHhcc
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIGS 31 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~~ 31 (103)
||.|+||-|+||=-+|-.|+..|.+
T Consensus 2 ~i~v~gKGGvGKTT~a~nLA~~la~ 26 (267)
T cd02032 2 VLAVYGKGGIGKSTTSSNLSVALAK 26 (267)
T ss_pred EEEEecCCCCCHHHHHHHHHHHHHH
Confidence 6788899999999988888888755
No 431
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=67.51 E-value=8.6 Score=31.26 Aligned_cols=40 Identities=15% Similarity=0.181 Sum_probs=29.0
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhc--ccceEEEecchhh
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIG--SQHCAIIRLSAPI 43 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~--~~~~~iv~iS~pi 43 (103)
.+.-|+|+|..||||=-+.+.|...+- ....+++.|-+|-
T Consensus 147 ~~~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~ 188 (319)
T PRK13894 147 AHRNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTG 188 (319)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCC
Confidence 345689999999999999998887642 2345666666554
No 432
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f
Probab=67.47 E-value=4.8 Score=36.12 Aligned_cols=24 Identities=17% Similarity=0.340 Sum_probs=19.3
Q ss_pred EEEEecCcCCchhHHHHHHHHHhc
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIG 30 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~ 30 (103)
.|+|||++||||=-.|..+..-|.
T Consensus 94 sIiisGESGaGKTe~~K~i~~yLa 117 (677)
T cd01383 94 SIIISGESGAGKTETAKIAMQYLA 117 (677)
T ss_pred eEEEecCCCCCcchHHHHHHHHHH
Confidence 467899999999888877766654
No 433
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=67.43 E-value=5.5 Score=34.81 Aligned_cols=25 Identities=28% Similarity=0.491 Sum_probs=22.7
Q ss_pred EEEEecCcCCchhHHHHHHHHHhcc
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIGS 31 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~~ 31 (103)
.+||+|.+|+||--+|.++++.+.-
T Consensus 42 a~Lf~GP~GtGKTTlAriLAk~Lnc 66 (484)
T PRK14956 42 AYIFFGPRGVGKTTIARILAKRLNC 66 (484)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCc
Confidence 4799999999999999999999864
No 434
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=67.27 E-value=8.2 Score=33.32 Aligned_cols=34 Identities=21% Similarity=0.427 Sum_probs=26.0
Q ss_pred EEEEecCcCCchhHHHHHHHHHhcccceEEEecch
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSA 41 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~ 41 (103)
.|||+|.+|+||-=+|-.++..||+ .+-.+.||+
T Consensus 52 ~iLiaGppGtGKTAlA~~ia~eLG~-~~PF~~isg 85 (398)
T PF06068_consen 52 AILIAGPPGTGKTALAMAIAKELGE-DVPFVSISG 85 (398)
T ss_dssp EEEEEE-TTSSHHHHHHHHHHHCTT-TS-EEEEEG
T ss_pred EEEEeCCCCCCchHHHHHHHHHhCC-CCCeeEccc
Confidence 6899999999999999999999996 333444443
No 435
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=67.25 E-value=4.8 Score=26.20 Aligned_cols=22 Identities=23% Similarity=0.336 Sum_probs=17.1
Q ss_pred eEEEEEecCcCCchhHHHHHHH
Q psy4713 5 KLILLFSGKRKSGKDFLTDYLL 26 (103)
Q Consensus 5 klIiL~sGKrksGKDy~a~~l~ 26 (103)
...|+|.|..+|||==+.+.+.
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~ 24 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALV 24 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHh
Confidence 5679999999999966555553
No 436
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
Probab=67.24 E-value=10 Score=29.75 Aligned_cols=32 Identities=22% Similarity=0.304 Sum_probs=27.3
Q ss_pred EEEEecCcCCchhHHHHHHHHHhcc--cceEEEe
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIR 38 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~ 38 (103)
||-|+|-++|||=.++..|...|.. .++.++.
T Consensus 3 vi~ivG~~gsGKTtl~~~l~~~L~~~G~~V~viK 36 (229)
T PRK14494 3 AIGVIGFKDSGKTTLIEKILKNLKERGYRVATAK 36 (229)
T ss_pred EEEEECCCCChHHHHHHHHHHHHHhCCCeEEEEE
Confidence 7889999999999999999999975 4666664
No 437
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=67.17 E-value=15 Score=29.79 Aligned_cols=51 Identities=14% Similarity=0.272 Sum_probs=34.5
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhcc--cceEEEecchhh-------HHHHHHHcCccH
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRLSAPI-------KSHWAKQNGLEM 55 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~iS~pi-------K~~yA~~~glDl 55 (103)
+.-||+|.|..||||==.+..|+..+.. .++.++.. |+- -+.|+...|+.+
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~-D~~r~~a~eql~~~a~~~~i~~ 172 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAG-DTFRAAAIEQLQVWGERVGVPV 172 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEec-CccchhhHHHHHHHHHHcCceE
Confidence 4467888899999999999988888765 34554432 221 125777777653
No 438
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=67.14 E-value=18 Score=30.30 Aligned_cols=87 Identities=15% Similarity=0.068 Sum_probs=45.7
Q ss_pred EEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHHHcCccHHHhcCCCCcHHHhHHHHHHHHHHHhccChhh
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQNGLEMDKLLGATKYKEKYRAEMITWSEAERRKDNGC 86 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~~~glDl~~LL~d~~YKE~~R~~mi~wge~~R~~D~g~ 86 (103)
.|+|+|-.+|||=-+++.|...++... ..+.-++.+.+..|-+- .-+.-..|-+.-+....+..+..+..+.=.
T Consensus 221 ~IvI~G~~gsGKTTL~~~La~~~g~~~-----v~E~~R~~~~~~~~~~~-~~l~~~D~~~ia~~~~~~~~~~~~~a~~~~ 294 (399)
T PRK08099 221 TVAILGGESSGKSTLVNKLANIFNTTS-----AWEYGREYVFSHLGGDE-MALQYSDYDKIALGHAQYIDFAVKYANKVA 294 (399)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCe-----eeeccHHHHHHhhcCCc-cCCChhhhHHHHhhhHHHHHHHHHhcCCeE
Confidence 578999999999999999999987432 22333444444333221 112222232222222223334444555555
Q ss_pred hHHHHHHHHHHHH
Q psy4713 87 FIRSAIEMAHAMK 99 (103)
Q Consensus 87 Fcr~~~~~~~~~~ 99 (103)
||..-+-...+|-
T Consensus 295 f~Dt~~~~t~~y~ 307 (399)
T PRK08099 295 FIDTDFVTTQAFC 307 (399)
T ss_pred EEeCChHHHHHHH
Confidence 6664333333343
No 439
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=66.98 E-value=21 Score=30.32 Aligned_cols=56 Identities=18% Similarity=0.198 Sum_probs=38.6
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhcc--cceEEEecchhhHHHH--HHHcCccHHHhc
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRLSAPIKSHW--AKQNGLEMDKLL 59 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~iS~piK~~y--A~~~glDl~~LL 59 (103)
|--++|++|..|+||=-++-.+...+.. .++..++.-++..+.. |...|.+.+++.
T Consensus 93 ~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~~ra~rlg~~~~~l~ 152 (454)
T TIGR00416 93 PGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIKMRAIRLGLPEPNLY 152 (454)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHHHHHHHcCCChHHeE
Confidence 4568899999999999888877666543 3555666655554433 456787777653
No 440
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=66.88 E-value=5.1 Score=35.86 Aligned_cols=34 Identities=18% Similarity=0.388 Sum_probs=27.7
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhcc-------cceEEE
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIGS-------QHCAII 37 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~~-------~~~~iv 37 (103)
.-+.||+.|++|.||-.+|..++..-.. .||..+
T Consensus 245 Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAl 285 (550)
T COG3604 245 SDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAAL 285 (550)
T ss_pred CCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeecccc
Confidence 3467999999999999999999988654 466654
No 441
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=66.86 E-value=8.6 Score=32.52 Aligned_cols=33 Identities=24% Similarity=0.257 Sum_probs=25.2
Q ss_pred EEEecCcCCchhHHHHHHHHHhcc--cceEEEecc
Q psy4713 8 LLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRLS 40 (103)
Q Consensus 8 iL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~iS 40 (103)
++|+|..|+||=+++..+...+.+ ....|+-++
T Consensus 144 l~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~ 178 (450)
T PRK14087 144 LFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMS 178 (450)
T ss_pred eEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 789999999999999999887653 234554444
No 442
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=66.77 E-value=3.9 Score=30.52 Aligned_cols=21 Identities=24% Similarity=0.233 Sum_probs=17.1
Q ss_pred EEEEEecCcCCchhHHHHHHH
Q psy4713 6 LILLFSGKRKSGKDFLTDYLL 26 (103)
Q Consensus 6 lIiL~sGKrksGKDy~a~~l~ 26 (103)
-|+++||.++|||==+...+.
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~ 46 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIG 46 (199)
T ss_pred cEEEEECCCCCChHHHHHHHH
Confidence 478899999999987666554
No 443
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=66.65 E-value=10 Score=27.79 Aligned_cols=25 Identities=20% Similarity=0.232 Sum_probs=21.1
Q ss_pred EEEEecCcCCchhHHHHHHHHHhcc
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIGS 31 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~~ 31 (103)
||.|+||-|+||=-+|-.|+..|.+
T Consensus 2 ~iav~gKGGvGKTt~~~nLA~~la~ 26 (212)
T cd02117 2 QIAIYGKGGIGKSTTSQNLSAALAE 26 (212)
T ss_pred EEEEECCCcCcHHHHHHHHHHHHHH
Confidence 5677799999999988888888765
No 444
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=66.46 E-value=6.6 Score=31.87 Aligned_cols=24 Identities=25% Similarity=0.448 Sum_probs=22.0
Q ss_pred EEEEecCcCCchhHHHHHHHHHhc
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIG 30 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~ 30 (103)
-+||+|.+|+||.-+|..++..+.
T Consensus 23 A~Lf~G~~G~GK~~la~~~a~~ll 46 (325)
T PRK08699 23 AWLFAGKKGIGKTAFARFAAQALL 46 (325)
T ss_pred EEEeECCCCCCHHHHHHHHHHHHc
Confidence 578999999999999999999974
No 445
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=66.46 E-value=10 Score=31.68 Aligned_cols=58 Identities=24% Similarity=0.316 Sum_probs=42.5
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHHHcCccHHHhcCCCCc
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQNGLEMDKLLGATKY 64 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~~~glDl~~LL~d~~Y 64 (103)
..+|||+-|-+|.||-=+|-.++.+|| ...+==+|.|.+-.-+.-+=++.-.|..+.|
T Consensus 88 ~p~IILIGGasGVGkStIA~ElA~rLg---I~~visTD~IREvlR~ii~~~l~PtLh~Ssy 145 (299)
T COG2074 88 RPLIILIGGASGVGKSTIAGELARRLG---IRSVISTDSIREVLRKIISPELLPTLHTSSY 145 (299)
T ss_pred CCeEEEecCCCCCChhHHHHHHHHHcC---CceeecchHHHHHHHHhCCHHhcchhhHhHH
Confidence 358899999999999999999999997 3333346777777666666555555544444
No 446
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=66.22 E-value=6.4 Score=34.20 Aligned_cols=24 Identities=29% Similarity=0.452 Sum_probs=22.0
Q ss_pred EEEEecCcCCchhHHHHHHHHHhc
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIG 30 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~ 30 (103)
.+||+|.+|+||--++..+.+.+.
T Consensus 40 a~Lf~Gp~G~GKTtlA~~lA~~l~ 63 (585)
T PRK14950 40 AYLFTGPRGVGKTSTARILAKAVN 63 (585)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 479999999999999999998885
No 447
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=66.20 E-value=7.1 Score=25.99 Aligned_cols=27 Identities=26% Similarity=0.231 Sum_probs=20.9
Q ss_pred eEEEEEecCcCCchhHHHHHHHHHhcc
Q psy4713 5 KLILLFSGKRKSGKDFLTDYLLERIGS 31 (103)
Q Consensus 5 klIiL~sGKrksGKDy~a~~l~~~l~~ 31 (103)
-=++.|.|.+||||-=+...+......
T Consensus 11 g~~~~i~G~nGsGKStLl~~l~g~~~~ 37 (137)
T PF00005_consen 11 GEIVAIVGPNGSGKSTLLKALAGLLPP 37 (137)
T ss_dssp TSEEEEEESTTSSHHHHHHHHTTSSHE
T ss_pred CCEEEEEccCCCccccceeeecccccc
Confidence 347899999999998877777666543
No 448
>PRK14665 mnmA tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=66.02 E-value=29 Score=28.87 Aligned_cols=82 Identities=16% Similarity=0.246 Sum_probs=47.5
Q ss_pred CCCeEEEEEecCcCCchhHHH--HHHHHHhcccceEEEecch-----h---hH--HHHHHHcCccHHHhcCCCCcHHHhH
Q psy4713 2 TQPKLILLFSGKRKSGKDFLT--DYLLERIGSQHCAIIRLSA-----P---IK--SHWAKQNGLEMDKLLGATKYKEKYR 69 (103)
Q Consensus 2 ~~pklIiL~sGKrksGKDy~a--~~l~~~l~~~~~~iv~iS~-----p---iK--~~yA~~~glDl~~LL~d~~YKE~~R 69 (103)
++.+++|++|| |+|=.+ -++++ .| ..+..+-+.. + ++ +.+|+.+|+.+.-+ ...|.|+
T Consensus 4 ~~~kVlValSG----GVDSsvaa~LL~~-~G-~~V~~v~~~~~~~~~~~~d~~~a~~va~~LgIp~~vv----d~~~~f~ 73 (360)
T PRK14665 4 KNKRVLLGMSG----GTDSSVAAMLLLE-AG-YEVTGVTFRFYEFNGSTEYLEDARALAERLGIGHITY----DARKVFR 73 (360)
T ss_pred CCCEEEEEEcC----CHHHHHHHHHHHH-cC-CeEEEEEEecCCCCCChHHHHHHHHHHHHhCCCEEEE----ecHHHHH
Confidence 35789999999 999433 33333 34 3444444421 1 21 46888888755432 2444454
Q ss_pred HHHHHH----HHHHhccChhhhHHHHHH
Q psy4713 70 AEMITW----SEAERRKDNGCFIRSAIE 93 (103)
Q Consensus 70 ~~mi~w----ge~~R~~D~g~Fcr~~~~ 93 (103)
.+.+.- ....+..+|-++|++.++
T Consensus 74 ~~v~~~f~~~y~~g~tpnpC~~Cnr~ik 101 (360)
T PRK14665 74 KQIIDYFIDEYMSGHTPVPCTLCNNYLK 101 (360)
T ss_pred HHHHhhhhhHHhccCCCCHHHHHHHHHH
Confidence 444333 234566789999998664
No 449
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=65.97 E-value=6 Score=35.58 Aligned_cols=25 Identities=32% Similarity=0.517 Sum_probs=22.5
Q ss_pred EEEEecCcCCchhHHHHHHHHHhcc
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIGS 31 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~~ 31 (103)
.+||+|.+|+||--++.++++.|.-
T Consensus 40 AyLf~Gp~GvGKTTlAr~lAk~L~c 64 (647)
T PRK07994 40 AYLFSGTRGVGKTTIARLLAKGLNC 64 (647)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhhh
Confidence 4899999999999999999998853
No 450
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=65.95 E-value=7.2 Score=30.91 Aligned_cols=36 Identities=25% Similarity=0.365 Sum_probs=27.5
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecc
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLS 40 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS 40 (103)
++-.++|+|..||||--+...|...+.. .-.++.|-
T Consensus 143 ~~~~ili~G~tGsGKTTll~al~~~~~~-~~~iv~ie 178 (308)
T TIGR02788 143 SRKNIIISGGTGSGKTTFLKSLVDEIPK-DERIITIE 178 (308)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHccCCc-cccEEEEc
Confidence 4568999999999999999988877653 33455554
No 451
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=65.78 E-value=20 Score=29.05 Aligned_cols=58 Identities=22% Similarity=0.259 Sum_probs=38.7
Q ss_pred CeEEEEEecCcCCchhHHHHHHHH--Hh----cc--cceEEEecchh--hH--HHHHHHcCccHHHhcCC
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLE--RI----GS--QHCAIIRLSAP--IK--SHWAKQNGLEMDKLLGA 61 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~--~l----~~--~~~~iv~iS~p--iK--~~yA~~~glDl~~LL~d 61 (103)
+--|+.|+|+.||||==++-.+.- .+ +. ..|.-|..-++ .. .++|+..|.|.+++|..
T Consensus 95 ~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~~a~~~g~d~~~~l~~ 164 (313)
T TIGR02238 95 SMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRAIAERFGVDPDAVLDN 164 (313)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHHHHHHcCCChHHhcCc
Confidence 456899999999999877765542 21 11 34445554442 22 35788899999887755
No 452
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=65.77 E-value=5.5 Score=32.87 Aligned_cols=24 Identities=25% Similarity=0.306 Sum_probs=20.2
Q ss_pred eEEEEEecCcCCchhHHHHHHHHH
Q psy4713 5 KLILLFSGKRKSGKDFLTDYLLER 28 (103)
Q Consensus 5 klIiL~sGKrksGKDy~a~~l~~~ 28 (103)
.-.++++|..||||+.+...|.+.
T Consensus 141 ~~~ivl~G~TGsGKT~iL~~L~~~ 164 (345)
T PRK11784 141 FPLVVLGGNTGSGKTELLQALANA 164 (345)
T ss_pred CceEecCCCCcccHHHHHHHHHhc
Confidence 334679999999999999999873
No 453
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=65.65 E-value=7.2 Score=27.28 Aligned_cols=26 Identities=15% Similarity=0.207 Sum_probs=21.8
Q ss_pred eEEEEEecCcCCchhHHHHHHHHHhc
Q psy4713 5 KLILLFSGKRKSGKDFLTDYLLERIG 30 (103)
Q Consensus 5 klIiL~sGKrksGKDy~a~~l~~~l~ 30 (103)
-=++.|.|.+||||--+.+.+.-.+.
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~ 51 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGELE 51 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCCC
Confidence 34789999999999999999877653
No 454
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=65.64 E-value=12 Score=26.98 Aligned_cols=38 Identities=18% Similarity=0.122 Sum_probs=27.0
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhcc--cceEEEecch
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRLSA 41 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~iS~ 41 (103)
+--|++|+|.+||||=-++-.+...... ..|..+...+
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~ 50 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEG 50 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 4568999999999998888776655433 3555555543
No 455
>PF13479 AAA_24: AAA domain
Probab=65.56 E-value=6 Score=29.51 Aligned_cols=22 Identities=32% Similarity=0.389 Sum_probs=19.6
Q ss_pred CeEEEEEecCcCCchhHHHHHH
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYL 25 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l 25 (103)
.++.++|.|++|+||=+++..+
T Consensus 2 ~~~~~lIyG~~G~GKTt~a~~~ 23 (213)
T PF13479_consen 2 KPIKILIYGPPGSGKTTLAASL 23 (213)
T ss_pred CceEEEEECCCCCCHHHHHHhC
Confidence 5678999999999999988877
No 456
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=65.46 E-value=7.8 Score=34.39 Aligned_cols=24 Identities=25% Similarity=0.415 Sum_probs=23.1
Q ss_pred EEEEecCcCCchhHHHHHHHHHhc
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIG 30 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~ 30 (103)
+|.|+|.+||||-=++..|+++++
T Consensus 3 ~i~I~G~~GsGKST~ak~la~~l~ 26 (712)
T PRK09518 3 IVAIDGPAGVGKSSVSRALAQYLG 26 (712)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 789999999999999999999997
No 457
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=65.46 E-value=8.1 Score=30.97 Aligned_cols=25 Identities=20% Similarity=0.320 Sum_probs=21.3
Q ss_pred EEEEecCcCCchhHHHHHHHHHhcc
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIGS 31 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~~ 31 (103)
-+++||.+||||--+-..+.+.+..
T Consensus 31 ~iaitGPSG~GKStllk~va~Lisp 55 (223)
T COG4619 31 FIAITGPSGCGKSTLLKIVASLISP 55 (223)
T ss_pred eEEEeCCCCccHHHHHHHHHhccCC
Confidence 3789999999999888888887754
No 458
>PTZ00014 myosin-A; Provisional
Probab=65.32 E-value=6 Score=36.47 Aligned_cols=23 Identities=22% Similarity=0.379 Sum_probs=17.6
Q ss_pred EEEEecCcCCchhHHHHHHHHHh
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERI 29 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l 29 (103)
-|||||++||||=-.|..+..-|
T Consensus 185 sIiiSGESGAGKTe~tK~im~yl 207 (821)
T PTZ00014 185 TIIVSGESGAGKTEATKQIMRYF 207 (821)
T ss_pred eEEEEcCCCCCchHHHHHHHHHH
Confidence 47889999999986666655554
No 459
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=65.31 E-value=9.6 Score=32.03 Aligned_cols=24 Identities=21% Similarity=0.200 Sum_probs=21.9
Q ss_pred EEEecCcCCchhHHHHHHHHHhcc
Q psy4713 8 LLFSGKRKSGKDFLTDYLLERIGS 31 (103)
Q Consensus 8 iL~sGKrksGKDy~a~~l~~~l~~ 31 (103)
++|.|..|+||=+++..+...+.+
T Consensus 133 l~lyG~~G~GKTHLl~ai~~~l~~ 156 (440)
T PRK14088 133 LFIYGGVGLGKTHLLQSIGNYVVQ 156 (440)
T ss_pred EEEEcCCCCcHHHHHHHHHHHHHH
Confidence 889999999999999999998754
No 460
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=65.30 E-value=8.6 Score=33.93 Aligned_cols=58 Identities=17% Similarity=0.176 Sum_probs=38.3
Q ss_pred EEEEecCcCCchhHHHHHHHHHhcccc-eEEEecchhhHHHHHHHcCccHHHhcCCCCcHHHhHH
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIGSQH-CAIIRLSAPIKSHWAKQNGLEMDKLLGATKYKEKYRA 70 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~~~~-~~iv~iS~piK~~yA~~~glDl~~LL~d~~YKE~~R~ 70 (103)
-++|+|..|+||=.++..+.+.+.... ..++-++.|.- ...++=+-+.++.+|+..+.
T Consensus 39 ~~ll~G~pG~GKT~la~~la~~l~~~~~~~~~~~~n~~~------~~~~~~~~v~~~~g~~~~~~ 97 (608)
T TIGR00764 39 NVLLIGEPGVGKSMLAKAMAELLPDEELEDILVYPNPED------PNMPRIVEVPAGEGREIVED 97 (608)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCchhheeEEEEeCCCC------CchHHHHHHHHhhchHHHHH
Confidence 456999999999999999999997643 55666777621 11122233445556666554
No 461
>PHA02244 ATPase-like protein
Probab=65.27 E-value=9.6 Score=32.56 Aligned_cols=24 Identities=21% Similarity=0.468 Sum_probs=21.7
Q ss_pred EEEecCcCCchhHHHHHHHHHhcc
Q psy4713 8 LLFSGKRKSGKDFLTDYLLERIGS 31 (103)
Q Consensus 8 iL~sGKrksGKDy~a~~l~~~l~~ 31 (103)
||+.|..|+||-.++..++..++.
T Consensus 122 VLL~GppGtGKTtLA~aLA~~lg~ 145 (383)
T PHA02244 122 VFLKGGAGSGKNHIAEQIAEALDL 145 (383)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCC
Confidence 677999999999999999999763
No 462
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=65.26 E-value=7.7 Score=31.27 Aligned_cols=25 Identities=20% Similarity=0.345 Sum_probs=22.4
Q ss_pred EEEEEecCcCCchhHHHHHHHHHhc
Q psy4713 6 LILLFSGKRKSGKDFLTDYLLERIG 30 (103)
Q Consensus 6 lIiL~sGKrksGKDy~a~~l~~~l~ 30 (103)
-.+||+|..|+||.-.|..++..+-
T Consensus 27 ha~Lf~G~~G~Gk~~~A~~~a~~ll 51 (314)
T PRK07399 27 PAYLFAGPEGVGRKLAALCFIEGLL 51 (314)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHc
Confidence 3789999999999999999988874
No 463
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=65.21 E-value=7.1 Score=34.21 Aligned_cols=26 Identities=23% Similarity=0.278 Sum_probs=23.5
Q ss_pred eEEEEEecCcCCchhHHHHHHHHHhc
Q psy4713 5 KLILLFSGKRKSGKDFLTDYLLERIG 30 (103)
Q Consensus 5 klIiL~sGKrksGKDy~a~~l~~~l~ 30 (103)
.-.+||+|.+|.||.-+|.++++.+.
T Consensus 38 ~hayLf~Gp~G~GKTt~Ar~lAk~L~ 63 (563)
T PRK06647 38 ANAYIFSGPRGVGKTSSARAFARCLN 63 (563)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhhc
Confidence 34689999999999999999999986
No 464
>TIGR03436 acidobact_VWFA VWFA-related Acidobacterial domain. Members of this family are bacterial domains that include a region related to the von Willebrand factor type A (VWFA) domain (pfam00092). These domains are restricted to, and have undergone a large paralogous family expansion in, the Acidobacteria, including Solibacter usitatus and Acidobacterium capsulatum ATCC 51196.
Probab=65.14 E-value=30 Score=26.57 Aligned_cols=52 Identities=19% Similarity=0.220 Sum_probs=32.7
Q ss_pred CCCeEEEEEe-cCcCCchhHHHHHHHHHhcccceEE--Eecc-----------------hhhHHHHHHHcCcc
Q psy4713 2 TQPKLILLFS-GKRKSGKDFLTDYLLERIGSQHCAI--IRLS-----------------APIKSHWAKQNGLE 54 (103)
Q Consensus 2 ~~pklIiL~s-GKrksGKDy~a~~l~~~l~~~~~~i--v~iS-----------------~piK~~yA~~~glD 54 (103)
+.++.||||| |..-++.+-+.+.+. .+.+.++.| |.+. ...=++.|+.+|=-
T Consensus 163 p~rk~iIllTDG~~~~~~~~~~~~~~-~~~~~~v~vy~I~~~~~~~~~~~~~~~~~~~~~~~L~~iA~~TGG~ 234 (296)
T TIGR03436 163 PGRKALIVISDGGDNRSRDTLERAID-AAQRADVAIYSIDARGLRAPDLGAGAKAGLGGPEALERLAEETGGR 234 (296)
T ss_pred CCCeEEEEEecCCCcchHHHHHHHHH-HHHHcCCEEEEeccCccccCCcccccccCCCcHHHHHHHHHHhCCe
Confidence 3578899999 877777666665554 344444444 5553 23567778877654
No 465
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=64.94 E-value=6.5 Score=35.36 Aligned_cols=24 Identities=29% Similarity=0.505 Sum_probs=22.5
Q ss_pred EEEEecCcCCchhHHHHHHHHHhc
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIG 30 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~ 30 (103)
.+||+|.+|+||.-+|.+|++.+.
T Consensus 40 a~Lf~GPpG~GKTtiArilAk~L~ 63 (624)
T PRK14959 40 AYLFSGTRGVGKTTIARIFAKALN 63 (624)
T ss_pred eEEEECCCCCCHHHHHHHHHHhcc
Confidence 589999999999999999999985
No 466
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=64.73 E-value=25 Score=29.11 Aligned_cols=58 Identities=24% Similarity=0.281 Sum_probs=39.2
Q ss_pred CeEEEEEecCcCCchhHHHHHHHH--Hh----cc--cceEEEecch--hhH--HHHHHHcCccHHHhcCC
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLE--RI----GS--QHCAIIRLSA--PIK--SHWAKQNGLEMDKLLGA 61 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~--~l----~~--~~~~iv~iS~--piK--~~yA~~~glDl~~LL~d 61 (103)
+.-|..|+|..||||==++-.+.- .+ +. ..|.-|..-+ +.. .++|+..|+|.+++|..
T Consensus 125 ~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~ia~~~g~d~~~~l~~ 194 (344)
T PLN03187 125 TRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVPIAERFGMDADAVLDN 194 (344)
T ss_pred CCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHHHHHHcCCChhhhcCe
Confidence 456899999999999877766542 22 22 3555555544 233 46788899998887655
No 467
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=64.30 E-value=8 Score=28.41 Aligned_cols=24 Identities=25% Similarity=0.221 Sum_probs=21.3
Q ss_pred EEEEecCcCCchhHHHHHHHHHhc
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIG 30 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~ 30 (103)
++.+.|.+||||--+...+.-.+.
T Consensus 38 ~~~i~G~nGsGKSTLl~~i~Gl~~ 61 (228)
T PRK10584 38 TIALIGESGSGKSTLLAILAGLDD 61 (228)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC
Confidence 789999999999999999987753
No 468
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=64.29 E-value=9.5 Score=30.59 Aligned_cols=27 Identities=22% Similarity=0.303 Sum_probs=23.2
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhc
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIG 30 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~ 30 (103)
..-.+||+|..|+||.-+|..++..+-
T Consensus 27 l~ha~Lf~G~~G~gk~~~a~~la~~l~ 53 (329)
T PRK08058 27 LSHAYLFEGAKGTGKKATALWLAKSLF 53 (329)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHC
Confidence 345789999999999999999988874
No 469
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=64.16 E-value=7.7 Score=31.83 Aligned_cols=25 Identities=24% Similarity=0.267 Sum_probs=22.4
Q ss_pred EEEEEecCcCCchhHHHHHHHHHhc
Q psy4713 6 LILLFSGKRKSGKDFLTDYLLERIG 30 (103)
Q Consensus 6 lIiL~sGKrksGKDy~a~~l~~~l~ 30 (103)
--+||+|.+|.||.=+|..++..+-
T Consensus 25 HA~Lf~G~~G~GK~~lA~~~A~~ll 49 (325)
T PRK06871 25 HALLFKADSGLGTEQLIRALAQWLM 49 (325)
T ss_pred eeEEeECCCCCCHHHHHHHHHHHHc
Confidence 3689999999999999999999884
No 470
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=64.12 E-value=74 Score=26.05 Aligned_cols=65 Identities=14% Similarity=0.256 Sum_probs=46.1
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhc---ccceEEEecchhhHH----HHHHHcCccHHHhcCCCCcHHHh
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIG---SQHCAIIRLSAPIKS----HWAKQNGLEMDKLLGATKYKEKY 68 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~---~~~~~iv~iS~piK~----~yA~~~glDl~~LL~d~~YKE~~ 68 (103)
|--+++|+|.+|+||=-.+..+...+. ...+..+|+-.|-.+ ..+...|+++.++..-.-..|.+
T Consensus 194 ~G~l~vi~g~pg~GKT~~~l~~a~~~a~~~g~~vl~~SlEm~~~~i~~R~~~~~~~v~~~~~~~g~l~~~~~ 265 (434)
T TIGR00665 194 PSDLIILAARPSMGKTAFALNIAENAAIKEGKPVAFFSLEMSAEQLAMRMLSSESRVDSQKLRTGKLSDEDW 265 (434)
T ss_pred CCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCeEEEEeCcCCHHHHHHHHHHHhcCCCHHHhccCCCCHHHH
Confidence 556889999999999888777666542 246788898887755 44667889988886433333444
No 471
>PTZ00035 Rad51 protein; Provisional
Probab=64.04 E-value=22 Score=29.04 Aligned_cols=60 Identities=18% Similarity=0.203 Sum_probs=38.3
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhc--------ccceEEEecchhhH----HHHHHHcCccHHHhcCCCC
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIG--------SQHCAIIRLSAPIK----SHWAKQNGLEMDKLLGATK 63 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~--------~~~~~iv~iS~piK----~~yA~~~glDl~~LL~d~~ 63 (103)
+--|+.|+|.+||||==++..+.-... ...|..|.-.++.. .+.|+..|+|.+.++..=.
T Consensus 117 ~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri~~ia~~~g~~~~~~l~nI~ 188 (337)
T PTZ00035 117 TGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERIVQIAERFGLDPEDVLDNIA 188 (337)
T ss_pred CCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHHHHHHHHhCCChHhHhhceE
Confidence 456889999999999988876653221 13343444444211 3468888999877766533
No 472
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=63.92 E-value=14 Score=27.04 Aligned_cols=35 Identities=29% Similarity=0.274 Sum_probs=28.3
Q ss_pred eEEEEEecCcCCchhHHHHHHHHHhcc--cceEEEec
Q psy4713 5 KLILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRL 39 (103)
Q Consensus 5 klIiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~i 39 (103)
++|.++|+|-|+||=-+|-.|...|.+ .++.+|-.
T Consensus 2 ~iI~v~s~KGGvGKTt~a~nla~~la~~g~~VlliD~ 38 (246)
T TIGR03371 2 KVIAIVGVKGGVGKTTLTANLASALKLLGEPVLAIDL 38 (246)
T ss_pred cEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 478888999999999999999988865 45556554
No 473
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=63.90 E-value=7.8 Score=34.10 Aligned_cols=25 Identities=32% Similarity=0.340 Sum_probs=22.5
Q ss_pred EEEEEecCcCCchhHHHHHHHHHhc
Q psy4713 6 LILLFSGKRKSGKDFLTDYLLERIG 30 (103)
Q Consensus 6 lIiL~sGKrksGKDy~a~~l~~~l~ 30 (103)
-.+||+|.+|+||.-++..++..+.
T Consensus 37 hayLf~Gp~G~GKTt~Ar~LAk~L~ 61 (535)
T PRK08451 37 HAYLFSGLRGSGKTSSARIFARALV 61 (535)
T ss_pred eeEEEECCCCCcHHHHHHHHHHHhc
Confidence 4579999999999999999999884
No 474
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=63.86 E-value=4.4 Score=33.61 Aligned_cols=13 Identities=23% Similarity=0.606 Sum_probs=12.1
Q ss_pred EEEEecCcCCchh
Q psy4713 7 ILLFSGKRKSGKD 19 (103)
Q Consensus 7 IiL~sGKrksGKD 19 (103)
||+|||=|||||-
T Consensus 3 lvIVTGlSGAGKs 15 (286)
T COG1660 3 LVIVTGLSGAGKS 15 (286)
T ss_pred EEEEecCCCCcHH
Confidence 7899999999996
No 475
>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional
Probab=63.84 E-value=9.2 Score=35.52 Aligned_cols=27 Identities=30% Similarity=0.501 Sum_probs=25.3
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhc
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIG 30 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~ 30 (103)
.+++|.|+|..||||-=++..|+..|+
T Consensus 33 ~~~~i~idG~~gsGKst~~~~la~~l~ 59 (863)
T PRK12269 33 GTVIIALDGPAGSGKSSVCRLLASRLG 59 (863)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 458999999999999999999999997
No 476
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=63.69 E-value=12 Score=25.79 Aligned_cols=33 Identities=27% Similarity=0.316 Sum_probs=26.7
Q ss_pred EEEEEecCcCCchhHHHHHHHHHhcc--cceEEEe
Q psy4713 6 LILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIR 38 (103)
Q Consensus 6 lIiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~ 38 (103)
+|.++++|.|+||=-+|-.|...+.+ .++.+|-
T Consensus 1 ~i~v~~~kgG~GKtt~a~~la~~l~~~g~~vllvD 35 (179)
T cd02036 1 VIVVTSGKGGVGKTTTTANLGTALAQLGYKVVLID 35 (179)
T ss_pred CEEEeeCCCCCCHHHHHHHHHHHHHhCCCeEEEEe
Confidence 47889999999999999999988875 4555553
No 477
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=63.64 E-value=8 Score=29.03 Aligned_cols=25 Identities=16% Similarity=0.123 Sum_probs=21.3
Q ss_pred eEEEEEecCcCCchhHHHHHHHHHh
Q psy4713 5 KLILLFSGKRKSGKDFLTDYLLERI 29 (103)
Q Consensus 5 klIiL~sGKrksGKDy~a~~l~~~l 29 (103)
-=++.|.|.+||||--+.+.+.-.+
T Consensus 32 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 56 (253)
T PRK14261 32 NRVTALIGPSGCGKSTLLRCFNRMN 56 (253)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccc
Confidence 3478999999999999999998643
No 478
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=63.29 E-value=10 Score=28.58 Aligned_cols=25 Identities=24% Similarity=0.260 Sum_probs=21.2
Q ss_pred EEEEecCcCCchhHHHHHHHHHhcc
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIGS 31 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~~ 31 (103)
+..|.|++||||==+.+.+.-.|+.
T Consensus 27 ~~~IvG~NGsGKStll~Ai~~ll~~ 51 (251)
T cd03273 27 FNAITGLNGSGKSNILDAICFVLGI 51 (251)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhcc
Confidence 5679999999999888888877764
No 479
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=63.27 E-value=11 Score=28.47 Aligned_cols=34 Identities=21% Similarity=0.237 Sum_probs=26.1
Q ss_pred EEEEecCcCCchhHHHHHHHHHhcc--cceEEEecc
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRLS 40 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~iS 40 (103)
.+.+.|.+|+||=.+...+...+.+ ...+|+-++
T Consensus 36 ~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~ 71 (219)
T PF00308_consen 36 PLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS 71 (219)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhccccccceeec
Confidence 3678999999999999999887764 356666665
No 480
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=63.18 E-value=8.5 Score=28.50 Aligned_cols=24 Identities=25% Similarity=0.288 Sum_probs=20.7
Q ss_pred EEEEEecCcCCchhHHHHHHHHHh
Q psy4713 6 LILLFSGKRKSGKDFLTDYLLERI 29 (103)
Q Consensus 6 lIiL~sGKrksGKDy~a~~l~~~l 29 (103)
=++.|.|.+||||--+..+|.-..
T Consensus 34 e~~~i~G~nGsGKSTLl~~l~G~~ 57 (225)
T PRK10247 34 EFKLITGPSGCGKSTLLKIVASLI 57 (225)
T ss_pred CEEEEECCCCCCHHHHHHHHhccc
Confidence 478999999999999998887654
No 481
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=63.04 E-value=13 Score=27.78 Aligned_cols=35 Identities=26% Similarity=0.389 Sum_probs=28.8
Q ss_pred EEEEEecCcCCchhHHHHHHHHHhcc--cceEEEecc
Q psy4713 6 LILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRLS 40 (103)
Q Consensus 6 lIiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~iS 40 (103)
-|+=|+|.++|||==+.+.+...|.+ ..+.+|.-+
T Consensus 3 ~Il~ivG~k~SGKTTLie~lv~~L~~~G~rVa~iKH~ 39 (161)
T COG1763 3 KILGIVGYKNSGKTTLIEKLVRKLKARGYRVATVKHA 39 (161)
T ss_pred cEEEEEecCCCChhhHHHHHHHHHHhCCcEEEEEEec
Confidence 47889999999999999999999987 456666543
No 482
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=62.91 E-value=7.7 Score=35.58 Aligned_cols=26 Identities=27% Similarity=0.446 Sum_probs=23.3
Q ss_pred eEEEEEecCcCCchhHHHHHHHHHhc
Q psy4713 5 KLILLFSGKRKSGKDFLTDYLLERIG 30 (103)
Q Consensus 5 klIiL~sGKrksGKDy~a~~l~~~l~ 30 (103)
.-.+||+|.+|+||--+|.++++.+.
T Consensus 37 ~HAyLF~GPpGvGKTTlAriLAK~Ln 62 (702)
T PRK14960 37 HHAYLFTGTRGVGKTTIARILAKCLN 62 (702)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34689999999999999999999885
No 483
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=62.89 E-value=7.9 Score=33.65 Aligned_cols=23 Identities=17% Similarity=0.206 Sum_probs=21.2
Q ss_pred EEEEecCcCCchhHHHHHHHHHh
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERI 29 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l 29 (103)
-+||+|.+|+||-=+|.+++..+
T Consensus 37 a~Lf~Gp~G~GKTT~ArilAk~L 59 (491)
T PRK14964 37 SILLVGASGVGKTTCARIISLCL 59 (491)
T ss_pred eEEEECCCCccHHHHHHHHHHHH
Confidence 58999999999999999999876
No 484
>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the
Probab=62.44 E-value=7.4 Score=35.54 Aligned_cols=24 Identities=25% Similarity=0.404 Sum_probs=19.0
Q ss_pred EEEEecCcCCchhHHHHHHHHHhc
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIG 30 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~ 30 (103)
.|+|||++||||=-.|..+..-|.
T Consensus 88 sIiiSGESGAGKTe~tK~i~~yla 111 (767)
T cd01386 88 SIIFLGRSGAGKTTSCKHALEYLA 111 (767)
T ss_pred eEEEecCCCCCcHHHHHHHHHHHH
Confidence 578899999999877777666653
No 485
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=62.37 E-value=7.3 Score=34.25 Aligned_cols=22 Identities=18% Similarity=0.274 Sum_probs=21.3
Q ss_pred EEEecCcCCchhHHHHHHHHHh
Q psy4713 8 LLFSGKRKSGKDFLTDYLLERI 29 (103)
Q Consensus 8 iL~sGKrksGKDy~a~~l~~~l 29 (103)
|||+|.+|+||.-++..+++.+
T Consensus 28 vli~G~~GtgKs~lar~l~~~l 49 (633)
T TIGR02442 28 VLIRGEKGTAKSTAARGLAALL 49 (633)
T ss_pred EEEEcCCCCcHHHHHHHHHHhC
Confidence 8999999999999999999998
No 486
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=62.34 E-value=14 Score=29.32 Aligned_cols=35 Identities=26% Similarity=0.318 Sum_probs=20.0
Q ss_pred EEEEEecCcCCchhHHHHHHHHHhcccceEEEecc
Q psy4713 6 LILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLS 40 (103)
Q Consensus 6 lIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS 40 (103)
.=++|-|+|||||-=+.-.|..-+...-.+|+-++
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t 48 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLIT 48 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEe
Confidence 44677899999996443333333443224444443
No 487
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=62.34 E-value=13 Score=30.63 Aligned_cols=32 Identities=19% Similarity=0.396 Sum_probs=22.5
Q ss_pred EEEEEecCcCCchhHHHHHHHHHhcc--cceEEE
Q psy4713 6 LILLFSGKRKSGKDFLTDYLLERIGS--QHCAII 37 (103)
Q Consensus 6 lIiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv 37 (103)
.|++|+||-|.||==+|-..+-.+.+ .++-+|
T Consensus 3 riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlv 36 (322)
T COG0003 3 RIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLV 36 (322)
T ss_pred EEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEE
Confidence 58999999999997777665544433 334444
No 488
>smart00389 HOX Homeodomain. DNA-binding factors that are involved in the transcriptional regulation of key developmental processes
Probab=61.99 E-value=28 Score=19.98 Aligned_cols=49 Identities=16% Similarity=0.100 Sum_probs=36.4
Q ss_pred chhHHHHHHHHHhcccceEEEecchhhHHHHHHHcCccHHHhcCCCCcHHHhHHHHHHHHHHHhccC
Q psy4713 17 GKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQNGLEMDKLLGATKYKEKYRAEMITWSEAERRKD 83 (103)
Q Consensus 17 GKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~~~glDl~~LL~d~~YKE~~R~~mi~wge~~R~~D 83 (103)
--+.-..+|...+.... ..+...+.+.|+.+|+. ......||...|..+
T Consensus 7 ~~~~~~~~L~~~f~~~~----~P~~~~~~~la~~~~l~--------------~~qV~~WF~nrR~~~ 55 (56)
T smart00389 7 FTPEQLEELEKEFQKNP----YPSREEREELAAKLGLS--------------ERQVKVWFQNRRAKW 55 (56)
T ss_pred CCHHHHHHHHHHHHhCC----CCCHHHHHHHHHHHCcC--------------HHHHHHhHHHHhhcc
Confidence 33445566777775433 57889999999999988 566788999998753
No 489
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=61.70 E-value=8.1 Score=28.31 Aligned_cols=27 Identities=30% Similarity=0.367 Sum_probs=23.1
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhc
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIG 30 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~ 30 (103)
|-=++.+.|.+||||--+.+.|.-...
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 58 (202)
T cd03233 32 PGEMVLVLGRPGSGCSTLLKALANRTE 58 (202)
T ss_pred CCcEEEEECCCCCCHHHHHHHhcccCC
Confidence 334789999999999999999988765
No 490
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=61.60 E-value=8.6 Score=34.52 Aligned_cols=25 Identities=28% Similarity=0.442 Sum_probs=22.7
Q ss_pred EEEEEecCcCCchhHHHHHHHHHhc
Q psy4713 6 LILLFSGKRKSGKDFLTDYLLERIG 30 (103)
Q Consensus 6 lIiL~sGKrksGKDy~a~~l~~~l~ 30 (103)
--+||+|.+|+||-=+|..++..+.
T Consensus 39 hA~Lf~GP~GvGKTTlA~~lAk~L~ 63 (605)
T PRK05896 39 HAYIFSGPRGIGKTSIAKIFAKAIN 63 (605)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhc
Confidence 4589999999999999999999985
No 491
>PRK14491 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA; Provisional
Probab=61.42 E-value=15 Score=32.37 Aligned_cols=33 Identities=24% Similarity=0.374 Sum_probs=28.0
Q ss_pred EEEEEecCcCCchhHHHHHHHHHhcc--cceEEEe
Q psy4713 6 LILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIR 38 (103)
Q Consensus 6 lIiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~ 38 (103)
-||-|.|.++|||==+.+.|..+|.+ .++.+|.
T Consensus 11 ~vi~ivG~s~sGKTTlie~li~~L~~~G~rVavIK 45 (597)
T PRK14491 11 PLLGFCAYSGTGKTTLLEQLIPELNQRGLRLAVIK 45 (597)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHhCCceEEEEE
Confidence 38999999999999999999999976 4566665
No 492
>TIGR02746 TraC-F-type type-IV secretion system protein TraC. The protein family described here is common among the F, P and I-like type IV secretion systems. Gene symbols include TraC (F-type), TrbE/VirB4 (P-type) and TraU (I-type). The protein conyains the Walker A and B motifs and so is a putative nucleotide triphosphatase.
Probab=61.33 E-value=11 Score=33.25 Aligned_cols=24 Identities=25% Similarity=0.314 Sum_probs=20.7
Q ss_pred EEEecCcCCchhHHHHHHHHHhcc
Q psy4713 8 LLFSGKRKSGKDFLTDYLLERIGS 31 (103)
Q Consensus 8 iL~sGKrksGKDy~a~~l~~~l~~ 31 (103)
++|+|.+||||=+.++.+...+-.
T Consensus 433 ~~I~G~tGsGKS~~~~~l~~~~~~ 456 (797)
T TIGR02746 433 IAVVGGSGAGKSFFMQELIVDNLS 456 (797)
T ss_pred eEEEcCCCCCHHHHHHHHHHHHHh
Confidence 689999999999999998876544
No 493
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=61.29 E-value=10 Score=26.94 Aligned_cols=26 Identities=19% Similarity=0.162 Sum_probs=21.8
Q ss_pred eEEEEEecCcCCchhHHHHHHHHHhc
Q psy4713 5 KLILLFSGKRKSGKDFLTDYLLERIG 30 (103)
Q Consensus 5 klIiL~sGKrksGKDy~a~~l~~~l~ 30 (103)
-=++.+.|.+||||--+.+.+.-.+.
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~G~~~ 51 (163)
T cd03216 26 GEVHALLGENGAGKSTLMKILSGLYK 51 (163)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 34788999999999999999876654
No 494
>PF02263 GBP: Guanylate-binding protein, N-terminal domain; InterPro: IPR015894 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function, and an alpha-helical finger-like C-terminal domain (IPR003191 from INTERPRO). Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3QOF_A 3Q5E_C 3QNU_A 3Q5D_A 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=61.11 E-value=11 Score=29.38 Aligned_cols=27 Identities=33% Similarity=0.561 Sum_probs=23.5
Q ss_pred CCCeEEEEEecCcCCchhHHHHHHHHH
Q psy4713 2 TQPKLILLFSGKRKSGKDFLTDYLLER 28 (103)
Q Consensus 2 ~~pklIiL~sGKrksGKDy~a~~l~~~ 28 (103)
..|-.||-|.|+-++||-|+.+.|...
T Consensus 18 ~~~v~vvsi~G~~rtGKSfLln~l~~~ 44 (260)
T PF02263_consen 18 DQPVAVVSIVGPYRTGKSFLLNQLLGP 44 (260)
T ss_dssp TSBEEEEEEEEETTSSHHHHHHHHCCB
T ss_pred CCCEEEEEeecCCccchHHHHHHHhcc
Confidence 357889999999999999999998753
No 495
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=61.00 E-value=9.2 Score=35.04 Aligned_cols=26 Identities=27% Similarity=0.452 Sum_probs=23.1
Q ss_pred eEEEEEecCcCCchhHHHHHHHHHhc
Q psy4713 5 KLILLFSGKRKSGKDFLTDYLLERIG 30 (103)
Q Consensus 5 klIiL~sGKrksGKDy~a~~l~~~l~ 30 (103)
.-.+||+|.+|+||--+|.+++..+.
T Consensus 40 ~HAYLF~GP~GtGKTt~AriLAk~Ln 65 (725)
T PRK07133 40 SHAYLFSGPRGTGKTSVAKIFANALN 65 (725)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHhc
Confidence 44689999999999999999999874
No 496
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=60.99 E-value=12 Score=29.32 Aligned_cols=26 Identities=19% Similarity=0.242 Sum_probs=23.0
Q ss_pred eEEEEEecCcCCchhHHHHHHHHHhc
Q psy4713 5 KLILLFSGKRKSGKDFLTDYLLERIG 30 (103)
Q Consensus 5 klIiL~sGKrksGKDy~a~~l~~~l~ 30 (103)
+-.+||+|..|+||.=+|..++..+.
T Consensus 26 ~ha~Lf~G~~G~Gk~~la~~~a~~l~ 51 (313)
T PRK05564 26 SHAHIIVGEDGIGKSLLAKEIALKIL 51 (313)
T ss_pred CceEEeECCCCCCHHHHHHHHHHHHc
Confidence 34789999999999999999999873
No 497
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=60.77 E-value=10 Score=27.39 Aligned_cols=26 Identities=19% Similarity=0.230 Sum_probs=22.1
Q ss_pred eEEEEEecCcCCchhHHHHHHHHHhc
Q psy4713 5 KLILLFSGKRKSGKDFLTDYLLERIG 30 (103)
Q Consensus 5 klIiL~sGKrksGKDy~a~~l~~~l~ 30 (103)
-=++.+.|.+||||-=+.+.+.-.+.
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~G~~~ 51 (195)
T PRK13541 26 SAITYIKGANGCGKSSLLRMIAGIMQ 51 (195)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 34789999999999999999987754
No 498
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=60.72 E-value=13 Score=33.45 Aligned_cols=25 Identities=24% Similarity=0.324 Sum_probs=23.3
Q ss_pred EEEEecCcCCchhHHHHHHHHHhcc
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIGS 31 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~~ 31 (103)
++||.|.+|+||-.++..++..++.
T Consensus 349 ~lll~GppG~GKT~lAk~iA~~l~~ 373 (775)
T TIGR00763 349 ILCLVGPPGVGKTSLGKSIAKALNR 373 (775)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhcC
Confidence 7999999999999999999999864
No 499
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=60.62 E-value=15 Score=27.95 Aligned_cols=25 Identities=20% Similarity=0.242 Sum_probs=21.5
Q ss_pred EEEEecCcCCchhHHHHHHHHHhcc
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIGS 31 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~~ 31 (103)
+|.|+||-|+||=-+|-.|+..|.+
T Consensus 2 ~ia~~gKGGVGKTT~a~nLA~~La~ 26 (275)
T TIGR01287 2 QIAIYGKGGIGKSTTTQNIAAALAE 26 (275)
T ss_pred eeEEeCCCcCcHHHHHHHHHHHHHH
Confidence 6778899999999988888877765
No 500
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=60.52 E-value=11 Score=33.87 Aligned_cols=35 Identities=17% Similarity=0.133 Sum_probs=27.1
Q ss_pred EEEEecCcCCchhHHHHHHHHHhcc--cceEEEecch
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRLSA 41 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~iS~ 41 (103)
-|+|.|.+|+||=+++..|...+.. ....|+-++.
T Consensus 316 pL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yita 352 (617)
T PRK14086 316 PLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSS 352 (617)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeH
Confidence 3799999999999999999998754 2355555544
Done!