Query psy4713
Match_columns 103
No_of_seqs 100 out of 108
Neff 3.8
Searched_HMMs 29240
Date Fri Aug 16 23:57:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4713.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4713hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ch4_B Pmkase, phosphomevalona 100.0 6.4E-35 2.2E-39 221.1 6.4 94 1-94 7-100 (202)
2 1dek_A Deoxynucleoside monopho 99.4 5.1E-13 1.7E-17 102.0 7.6 87 6-95 2-160 (241)
3 3lw7_A Adenylate kinase relate 97.0 0.0011 3.7E-08 43.4 5.0 41 5-49 1-41 (179)
4 1kht_A Adenylate kinase; phosp 96.8 0.0027 9.2E-08 42.8 5.8 53 6-59 4-60 (192)
5 2pbr_A DTMP kinase, thymidylat 96.8 0.0011 3.9E-08 44.7 3.8 37 7-43 2-38 (195)
6 3hdt_A Putative kinase; struct 96.7 0.003 1E-07 46.9 5.6 54 1-59 10-63 (223)
7 2c95_A Adenylate kinase 1; tra 96.5 0.0019 6.4E-08 43.9 3.0 41 3-46 7-47 (196)
8 2plr_A DTMP kinase, probable t 96.4 0.01 3.5E-07 40.5 6.3 48 1-50 1-52 (213)
9 2bwj_A Adenylate kinase 5; pho 96.3 0.004 1.4E-07 42.4 4.0 40 5-47 12-51 (199)
10 1e6c_A Shikimate kinase; phosp 96.2 0.011 3.7E-07 39.5 5.6 45 7-58 4-48 (173)
11 1qf9_A UMP/CMP kinase, protein 96.2 0.013 4.3E-07 39.3 6.0 39 6-47 7-45 (194)
12 3trf_A Shikimate kinase, SK; a 96.2 0.007 2.4E-07 41.1 4.7 42 1-45 1-42 (185)
13 1nn5_A Similar to deoxythymidy 96.0 0.0052 1.8E-07 42.3 3.5 29 4-32 8-36 (215)
14 3tlx_A Adenylate kinase 2; str 95.9 0.014 4.7E-07 42.6 5.6 43 3-48 27-69 (243)
15 2pt5_A Shikimate kinase, SK; a 95.9 0.017 5.8E-07 38.4 5.5 46 7-59 2-47 (168)
16 3dl0_A Adenylate kinase; phosp 95.8 0.0088 3E-07 41.8 4.1 53 7-62 2-56 (216)
17 1a7j_A Phosphoribulokinase; tr 95.8 0.0068 2.3E-07 46.1 3.5 39 1-39 1-41 (290)
18 2cdn_A Adenylate kinase; phosp 95.8 0.0086 2.9E-07 41.5 3.7 40 4-46 19-58 (201)
19 3iij_A Coilin-interacting nucl 95.8 0.017 5.8E-07 39.2 5.1 34 6-42 12-45 (180)
20 3umf_A Adenylate kinase; rossm 95.7 0.0081 2.8E-07 44.6 3.8 58 1-62 26-85 (217)
21 1zuh_A Shikimate kinase; alpha 95.7 0.022 7.4E-07 38.3 5.5 46 7-59 9-54 (168)
22 1nks_A Adenylate kinase; therm 95.7 0.02 6.8E-07 38.3 5.2 42 6-47 2-45 (194)
23 1jbk_A CLPB protein; beta barr 95.7 0.061 2.1E-06 35.0 7.4 25 7-31 45-69 (195)
24 3fb4_A Adenylate kinase; psych 95.7 0.016 5.6E-07 40.3 4.9 40 7-49 2-41 (216)
25 1qhx_A CPT, protein (chloramph 95.6 0.013 4.4E-07 39.4 3.9 25 6-30 4-28 (178)
26 1uf9_A TT1252 protein; P-loop, 95.5 0.02 6.9E-07 38.9 4.8 37 1-41 4-40 (203)
27 2p65_A Hypothetical protein PF 95.5 0.045 1.5E-06 35.9 6.2 25 7-31 45-69 (187)
28 2rhm_A Putative kinase; P-loop 95.5 0.015 5.2E-07 39.3 4.0 44 1-49 2-45 (193)
29 1tev_A UMP-CMP kinase; ploop, 95.4 0.035 1.2E-06 37.1 5.6 40 5-47 3-42 (196)
30 1cke_A CK, MSSA, protein (cyti 95.4 0.013 4.5E-07 40.8 3.5 30 1-30 1-30 (227)
31 1ukz_A Uridylate kinase; trans 95.4 0.035 1.2E-06 38.2 5.7 41 4-47 14-54 (203)
32 4eaq_A DTMP kinase, thymidylat 95.4 0.029 1E-06 40.9 5.5 55 4-63 25-79 (229)
33 3fdi_A Uncharacterized protein 95.3 0.011 3.9E-07 42.4 3.0 48 5-57 6-53 (201)
34 1aky_A Adenylate kinase; ATP:A 95.3 0.019 6.5E-07 40.4 4.1 42 3-47 2-43 (220)
35 1ak2_A Adenylate kinase isoenz 95.3 0.027 9.4E-07 40.3 5.0 39 6-47 17-55 (233)
36 3t61_A Gluconokinase; PSI-biol 95.3 0.013 4.3E-07 40.7 3.1 26 5-30 18-43 (202)
37 3tau_A Guanylate kinase, GMP k 95.2 0.014 4.7E-07 41.4 3.2 30 1-30 4-33 (208)
38 1knq_A Gluconate kinase; ALFA/ 95.2 0.022 7.5E-07 38.4 4.1 26 5-30 8-33 (175)
39 1e4v_A Adenylate kinase; trans 95.2 0.027 9.4E-07 39.5 4.7 52 7-61 2-55 (214)
40 2iyv_A Shikimate kinase, SK; t 95.2 0.033 1.1E-06 37.8 5.0 46 7-59 4-49 (184)
41 3kb2_A SPBC2 prophage-derived 95.1 0.02 6.9E-07 37.7 3.7 24 7-30 3-26 (173)
42 1uj2_A Uridine-cytidine kinase 94.9 0.044 1.5E-06 39.7 5.3 39 4-42 21-66 (252)
43 3r20_A Cytidylate kinase; stru 94.9 0.018 6.2E-07 43.3 3.4 52 1-56 5-59 (233)
44 4fcw_A Chaperone protein CLPB; 94.9 0.033 1.1E-06 40.4 4.7 28 4-31 46-73 (311)
45 1u94_A RECA protein, recombina 94.9 0.029 1E-06 44.3 4.6 56 4-59 62-119 (356)
46 1zd8_A GTP:AMP phosphotransfer 94.9 0.035 1.2E-06 39.3 4.6 54 6-62 8-63 (227)
47 2grj_A Dephospho-COA kinase; T 94.9 0.066 2.3E-06 38.5 6.1 43 4-49 11-53 (192)
48 1zak_A Adenylate kinase; ATP:A 94.8 0.026 8.9E-07 39.8 3.6 54 6-62 6-61 (222)
49 3ake_A Cytidylate kinase; CMP 94.7 0.033 1.1E-06 38.0 4.0 24 7-30 4-27 (208)
50 2wwf_A Thymidilate kinase, put 94.7 0.025 8.7E-07 38.8 3.4 27 5-31 10-36 (212)
51 3a4m_A L-seryl-tRNA(SEC) kinas 94.7 0.036 1.2E-06 40.7 4.3 30 1-31 1-30 (260)
52 2yvu_A Probable adenylyl-sulfa 94.6 0.047 1.6E-06 37.3 4.6 29 3-31 11-39 (186)
53 1vht_A Dephospho-COA kinase; s 94.6 0.036 1.2E-06 38.8 3.9 34 1-39 1-34 (218)
54 3n70_A Transport activator; si 94.5 0.021 7.2E-07 38.2 2.6 23 8-30 27-49 (145)
55 4edh_A DTMP kinase, thymidylat 94.5 0.052 1.8E-06 39.6 4.9 54 5-62 6-59 (213)
56 2v54_A DTMP kinase, thymidylat 94.5 0.037 1.3E-06 37.8 3.8 40 1-43 1-40 (204)
57 2qor_A Guanylate kinase; phosp 94.5 0.024 8.3E-07 39.6 2.9 27 4-30 11-37 (204)
58 2z0h_A DTMP kinase, thymidylat 94.4 0.036 1.2E-06 37.5 3.5 36 7-42 2-37 (197)
59 1y63_A LMAJ004144AAA protein; 94.4 0.069 2.4E-06 36.8 5.0 38 5-45 10-48 (184)
60 1via_A Shikimate kinase; struc 94.3 0.033 1.1E-06 37.7 3.1 46 7-59 6-51 (175)
61 2bjv_A PSP operon transcriptio 94.2 0.043 1.5E-06 39.5 3.7 27 6-32 30-56 (265)
62 3cm0_A Adenylate kinase; ATP-b 94.1 0.059 2E-06 36.3 4.1 39 4-45 3-41 (186)
63 1xp8_A RECA protein, recombina 94.1 0.053 1.8E-06 43.0 4.5 57 6-62 75-133 (366)
64 2xb4_A Adenylate kinase; ATP-b 94.1 0.045 1.5E-06 39.1 3.7 54 7-63 2-57 (223)
65 2zr9_A Protein RECA, recombina 94.0 0.059 2E-06 42.2 4.5 57 5-61 61-119 (349)
66 2w58_A DNAI, primosome compone 93.9 0.064 2.2E-06 36.9 4.1 35 6-40 55-91 (202)
67 1ex7_A Guanylate kinase; subst 93.9 0.036 1.2E-06 40.2 3.0 23 8-30 4-26 (186)
68 3bos_A Putative DNA replicatio 93.9 0.067 2.3E-06 36.6 4.1 37 5-41 52-90 (242)
69 3uie_A Adenylyl-sulfate kinase 93.8 0.051 1.8E-06 37.8 3.5 29 2-30 22-50 (200)
70 3t15_A Ribulose bisphosphate c 93.8 0.067 2.3E-06 40.1 4.3 28 3-30 34-61 (293)
71 2h92_A Cytidylate kinase; ross 93.7 0.041 1.4E-06 38.3 2.8 38 5-45 3-40 (219)
72 2f6r_A COA synthase, bifunctio 93.7 0.099 3.4E-06 39.1 5.0 35 4-42 74-108 (281)
73 2chg_A Replication factor C sm 93.7 0.066 2.3E-06 35.6 3.7 24 8-31 41-64 (226)
74 1kag_A SKI, shikimate kinase I 93.6 0.046 1.6E-06 36.5 2.9 29 1-30 1-29 (173)
75 3sr0_A Adenylate kinase; phosp 93.6 0.14 4.6E-06 37.3 5.5 53 7-62 2-56 (206)
76 1rz3_A Hypothetical protein rb 93.6 0.093 3.2E-06 36.7 4.5 36 3-38 20-57 (201)
77 2axn_A 6-phosphofructo-2-kinas 93.5 0.11 3.8E-06 42.8 5.5 40 2-41 32-73 (520)
78 3be4_A Adenylate kinase; malar 93.5 0.072 2.5E-06 37.6 3.9 53 6-61 6-60 (217)
79 1gvn_B Zeta; postsegregational 93.5 0.098 3.4E-06 39.4 4.8 27 4-30 32-58 (287)
80 4e22_A Cytidylate kinase; P-lo 93.4 0.065 2.2E-06 39.2 3.6 31 1-31 23-53 (252)
81 2vli_A Antibiotic resistance p 93.3 0.045 1.5E-06 36.7 2.3 26 6-31 6-31 (183)
82 3rhf_A Putative polyphosphate 93.1 0.13 4.5E-06 40.8 5.2 46 3-48 73-118 (289)
83 1ly1_A Polynucleotide kinase; 93.1 0.075 2.6E-06 35.2 3.3 36 6-45 3-39 (181)
84 3cf0_A Transitional endoplasmi 93.0 0.12 4E-06 38.6 4.6 36 4-42 48-83 (301)
85 1gtv_A TMK, thymidylate kinase 92.9 0.059 2E-06 37.0 2.6 25 7-31 2-26 (214)
86 1njg_A DNA polymerase III subu 92.7 0.098 3.4E-06 34.9 3.4 25 7-31 47-71 (250)
87 2if2_A Dephospho-COA kinase; a 92.6 0.1 3.4E-06 35.9 3.5 32 7-42 3-34 (204)
88 3d3q_A TRNA delta(2)-isopenten 92.6 0.16 5.5E-06 40.5 5.1 30 6-38 8-37 (340)
89 2qt1_A Nicotinamide riboside k 92.6 0.083 2.8E-06 36.6 3.0 36 3-40 19-54 (207)
90 3b9p_A CG5977-PA, isoform A; A 92.4 0.14 4.9E-06 37.1 4.2 27 4-30 53-79 (297)
91 3vaa_A Shikimate kinase, SK; s 92.3 0.2 6.9E-06 34.7 4.7 48 5-59 25-72 (199)
92 3tmk_A Thymidylate kinase; pho 92.3 0.21 7.1E-06 36.9 5.0 38 1-39 1-38 (216)
93 3crm_A TRNA delta(2)-isopenten 92.2 0.18 6E-06 39.9 4.8 36 1-39 1-36 (323)
94 3syl_A Protein CBBX; photosynt 92.1 0.15 5E-06 37.1 4.0 28 4-31 66-93 (309)
95 2j41_A Guanylate kinase; GMP, 92.1 0.11 3.7E-06 35.3 3.0 26 4-29 5-30 (207)
96 3hr8_A Protein RECA; alpha and 92.0 0.16 5.3E-06 40.5 4.3 60 4-63 60-121 (356)
97 2p5t_B PEZT; postsegregational 92.0 0.19 6.6E-06 36.5 4.4 27 4-30 31-57 (253)
98 2w0m_A SSO2452; RECA, SSPF, un 91.9 0.43 1.5E-05 32.5 5.8 54 6-59 24-81 (235)
99 1l8q_A Chromosomal replication 91.8 0.15 5.2E-06 37.8 3.8 35 6-40 38-72 (324)
100 2qz4_A Paraplegin; AAA+, SPG7, 91.8 0.22 7.4E-06 35.1 4.4 26 6-31 40-65 (262)
101 1fnn_A CDC6P, cell division co 91.8 0.23 7.7E-06 36.7 4.7 34 7-40 46-80 (389)
102 3io5_A Recombination and repai 91.8 0.24 8.1E-06 40.0 5.2 62 7-68 30-96 (333)
103 1q3t_A Cytidylate kinase; nucl 91.7 0.16 5.5E-06 36.3 3.7 28 3-30 14-41 (236)
104 2bbw_A Adenylate kinase 4, AK4 91.7 0.15 5E-06 36.6 3.5 28 4-31 26-53 (246)
105 4eun_A Thermoresistant glucoki 91.7 0.15 5.2E-06 35.4 3.5 28 4-31 28-55 (200)
106 2qgz_A Helicase loader, putati 91.6 0.16 5.5E-06 38.6 3.8 36 5-40 152-188 (308)
107 1ofh_A ATP-dependent HSL prote 91.6 0.21 7.1E-06 35.8 4.2 26 6-31 51-76 (310)
108 2pez_A Bifunctional 3'-phospho 91.4 0.25 8.4E-06 33.4 4.2 27 4-30 4-30 (179)
109 1odf_A YGR205W, hypothetical 3 91.4 0.28 9.7E-06 37.3 5.0 40 3-42 29-73 (290)
110 3eie_A Vacuolar protein sortin 91.3 0.28 9.5E-06 36.8 4.8 35 4-41 50-84 (322)
111 1d2n_A N-ethylmaleimide-sensit 91.2 0.35 1.2E-05 34.9 5.1 29 3-31 62-90 (272)
112 1kgd_A CASK, peripheral plasma 91.2 0.16 5.5E-06 34.9 3.2 26 5-30 5-30 (180)
113 3tqc_A Pantothenate kinase; bi 91.2 0.4 1.4E-05 37.5 5.8 39 3-41 90-132 (321)
114 1xwi_A SKD1 protein; VPS4B, AA 91.2 0.26 9E-06 37.4 4.6 27 4-30 44-70 (322)
115 2v1u_A Cell division control p 91.2 0.18 6.2E-06 37.0 3.6 37 5-41 44-86 (387)
116 1ojl_A Transcriptional regulat 91.1 0.12 4.3E-06 39.0 2.7 26 6-31 26-51 (304)
117 3co5_A Putative two-component 91.1 0.039 1.3E-06 36.9 -0.1 23 8-30 30-52 (143)
118 3ec2_A DNA replication protein 91.1 0.26 8.8E-06 33.3 4.1 39 5-43 38-79 (180)
119 3pfi_A Holliday junction ATP-d 91.1 0.22 7.6E-06 36.8 4.0 26 6-31 56-81 (338)
120 2cvh_A DNA repair and recombin 91.0 0.63 2.2E-05 31.7 6.0 55 4-59 19-77 (220)
121 2dr3_A UPF0273 protein PH0284; 91.0 0.47 1.6E-05 32.8 5.4 55 5-59 23-81 (247)
122 2qby_B CDC6 homolog 3, cell di 91.0 0.23 8E-06 36.8 4.1 36 6-41 46-89 (384)
123 2qby_A CDC6 homolog 1, cell di 91.0 0.2 6.8E-06 36.6 3.6 37 5-41 45-84 (386)
124 2xj4_A MIPZ; replication, cell 90.9 0.25 8.5E-06 36.5 4.1 39 1-39 1-41 (286)
125 3c8u_A Fructokinase; YP_612366 90.5 0.47 1.6E-05 33.1 5.1 39 3-41 20-60 (208)
126 1jjv_A Dephospho-COA kinase; P 90.4 0.24 8.3E-06 34.1 3.5 24 6-30 3-26 (206)
127 1zp6_A Hypothetical protein AT 90.4 0.26 8.9E-06 33.2 3.6 27 4-30 8-34 (191)
128 3d8b_A Fidgetin-like protein 1 90.4 0.31 1.1E-05 37.3 4.4 34 4-40 116-149 (357)
129 2chq_A Replication factor C sm 90.4 0.22 7.5E-06 35.8 3.4 23 8-30 41-63 (319)
130 3v9p_A DTMP kinase, thymidylat 90.4 0.12 4.1E-06 38.5 2.0 39 4-42 24-66 (227)
131 2jaq_A Deoxyguanosine kinase; 90.3 0.27 9.2E-06 33.1 3.6 25 7-31 2-26 (205)
132 1lv7_A FTSH; alpha/beta domain 90.2 0.33 1.1E-05 34.6 4.2 24 7-30 47-70 (257)
133 3czp_A Putative polyphosphate 90.1 0.4 1.4E-05 40.1 5.1 47 3-49 41-87 (500)
134 3h4m_A Proteasome-activating n 90.1 0.33 1.1E-05 34.9 4.1 28 4-31 50-77 (285)
135 3bs4_A Uncharacterized protein 90.0 0.65 2.2E-05 35.5 5.9 59 4-62 20-82 (260)
136 2z43_A DNA repair and recombin 90.0 0.55 1.9E-05 35.5 5.5 55 5-59 107-173 (324)
137 2qp9_X Vacuolar protein sortin 89.9 0.34 1.2E-05 37.3 4.3 36 4-42 83-118 (355)
138 3a00_A Guanylate kinase, GMP k 89.8 0.22 7.4E-06 34.3 2.8 24 7-30 3-26 (186)
139 1hqc_A RUVB; extended AAA-ATPa 89.8 0.26 9.1E-06 35.8 3.4 25 6-30 39-63 (324)
140 3asz_A Uridine kinase; cytidin 89.8 0.33 1.1E-05 33.4 3.8 34 4-38 5-38 (211)
141 3hws_A ATP-dependent CLP prote 89.7 0.35 1.2E-05 36.7 4.1 28 4-31 50-77 (363)
142 3eph_A TRNA isopentenyltransfe 89.7 0.27 9.4E-06 40.4 3.8 27 4-30 1-27 (409)
143 1m7g_A Adenylylsulfate kinase; 89.6 0.35 1.2E-05 33.8 3.8 27 4-30 24-50 (211)
144 1sxj_B Activator 1 37 kDa subu 89.6 0.28 9.7E-06 35.2 3.4 33 8-40 45-79 (323)
145 2r62_A Cell division protease 89.5 0.16 5.6E-06 36.3 2.1 24 8-31 47-70 (268)
146 1jr3_A DNA polymerase III subu 89.5 0.31 1E-05 36.0 3.6 25 7-31 40-64 (373)
147 1sq5_A Pantothenate kinase; P- 89.5 0.69 2.4E-05 34.8 5.6 39 3-41 78-120 (308)
148 1sxj_A Activator 1 95 kDa subu 89.4 0.39 1.3E-05 38.8 4.4 34 4-40 76-109 (516)
149 2ze6_A Isopentenyl transferase 89.3 0.33 1.1E-05 35.6 3.6 30 7-39 3-32 (253)
150 3zvl_A Bifunctional polynucleo 89.2 0.25 8.6E-06 39.1 3.2 69 4-78 257-333 (416)
151 2kjq_A DNAA-related protein; s 89.2 0.39 1.3E-05 32.7 3.8 26 6-31 37-62 (149)
152 2jeo_A Uridine-cytidine kinase 89.2 0.41 1.4E-05 34.4 4.0 28 4-31 24-51 (245)
153 3uk6_A RUVB-like 2; hexameric 89.2 0.42 1.4E-05 35.5 4.1 26 6-31 71-96 (368)
154 3pxg_A Negative regulator of g 89.1 0.3 1E-05 39.1 3.6 35 8-42 204-245 (468)
155 3exa_A TRNA delta(2)-isopenten 89.1 0.41 1.4E-05 38.3 4.3 66 6-74 4-87 (322)
156 3cmu_A Protein RECA, recombina 88.9 0.32 1.1E-05 47.1 4.2 67 4-70 1080-1149(2050)
157 1g8p_A Magnesium-chelatase 38 88.8 0.23 8E-06 36.4 2.5 23 8-30 48-70 (350)
158 1iqp_A RFCS; clamp loader, ext 88.8 0.34 1.1E-05 34.9 3.3 24 8-31 49-72 (327)
159 2woo_A ATPase GET3; tail-ancho 88.7 0.62 2.1E-05 35.6 4.9 36 3-38 17-54 (329)
160 4b4t_J 26S protease regulatory 88.7 0.48 1.7E-05 38.7 4.6 36 4-42 181-216 (405)
161 3lv8_A DTMP kinase, thymidylat 88.6 0.53 1.8E-05 35.1 4.4 28 5-32 27-54 (236)
162 3pxi_A Negative regulator of g 88.5 0.5 1.7E-05 39.7 4.7 28 4-31 520-547 (758)
163 2i1q_A DNA repair and recombin 88.4 0.7 2.4E-05 34.5 5.0 56 4-59 97-174 (322)
164 2c9o_A RUVB-like 1; hexameric 88.4 0.48 1.6E-05 37.6 4.2 35 6-41 64-98 (456)
165 1bif_A 6-phosphofructo-2-kinas 88.3 1.5 5.2E-05 34.9 7.2 29 3-31 37-65 (469)
166 1qvr_A CLPB protein; coiled co 88.3 0.44 1.5E-05 40.9 4.3 36 4-39 587-622 (854)
167 3cmw_A Protein RECA, recombina 88.3 0.39 1.3E-05 45.7 4.2 62 6-67 1083-1147(1706)
168 3foz_A TRNA delta(2)-isopenten 88.2 0.59 2E-05 37.3 4.7 30 6-38 11-40 (316)
169 1um8_A ATP-dependent CLP prote 88.1 0.48 1.6E-05 36.0 4.0 28 4-31 71-98 (376)
170 3tr0_A Guanylate kinase, GMP k 88.1 0.42 1.4E-05 32.4 3.3 26 4-29 6-31 (205)
171 3czq_A Putative polyphosphate 88.0 0.57 2E-05 37.1 4.5 44 4-47 85-128 (304)
172 2r2a_A Uncharacterized protein 88.0 0.42 1.4E-05 34.6 3.4 23 6-28 6-28 (199)
173 3czp_A Putative polyphosphate 87.9 0.5 1.7E-05 39.5 4.2 47 3-49 298-344 (500)
174 2zan_A Vacuolar protein sortin 87.5 0.58 2E-05 37.2 4.2 27 4-30 166-192 (444)
175 3cmu_A Protein RECA, recombina 87.5 0.45 1.5E-05 46.1 4.2 61 4-64 1426-1488(2050)
176 2zts_A Putative uncharacterize 87.5 1.5 5.3E-05 30.1 5.9 59 4-62 29-92 (251)
177 3u61_B DNA polymerase accessor 87.4 0.55 1.9E-05 34.5 3.8 34 4-40 47-80 (324)
178 3ney_A 55 kDa erythrocyte memb 87.3 0.48 1.6E-05 34.7 3.4 26 5-30 19-44 (197)
179 1v5w_A DMC1, meiotic recombina 87.2 1.2 4.1E-05 34.1 5.8 57 4-60 121-189 (343)
180 1ltq_A Polynucleotide kinase; 87.1 0.51 1.7E-05 34.3 3.4 32 6-39 3-34 (301)
181 3ld9_A DTMP kinase, thymidylat 86.9 0.36 1.2E-05 35.9 2.6 29 3-31 19-47 (223)
182 2woj_A ATPase GET3; tail-ancho 86.8 0.82 2.8E-05 35.6 4.7 28 3-30 16-43 (354)
183 1ixz_A ATP-dependent metallopr 86.8 0.69 2.4E-05 32.9 4.0 31 8-41 52-82 (254)
184 1sxj_C Activator 1 40 kDa subu 86.7 0.54 1.8E-05 35.2 3.5 24 8-31 49-72 (340)
185 3cmw_A Protein RECA, recombina 86.7 0.55 1.9E-05 44.7 4.2 67 6-72 1432-1501(1706)
186 4b4t_K 26S protease regulatory 86.7 0.81 2.8E-05 37.3 4.7 36 4-42 205-240 (428)
187 3ug7_A Arsenical pump-driving 86.5 1 3.4E-05 34.8 5.0 37 3-39 24-62 (349)
188 1r6b_X CLPA protein; AAA+, N-t 86.5 1.1 3.8E-05 37.4 5.5 27 4-30 487-513 (758)
189 1sxj_D Activator 1 41 kDa subu 86.4 0.51 1.8E-05 34.5 3.2 23 8-30 61-83 (353)
190 1s96_A Guanylate kinase, GMP k 86.2 0.53 1.8E-05 34.3 3.1 27 4-30 15-41 (219)
191 4tmk_A Protein (thymidylate ki 86.1 0.53 1.8E-05 34.3 3.1 37 6-42 4-41 (213)
192 1n0w_A DNA repair protein RAD5 85.9 1.9 6.4E-05 29.7 5.7 55 5-59 24-90 (243)
193 2fna_A Conserved hypothetical 85.9 1.3 4.4E-05 31.9 5.0 34 7-41 32-65 (357)
194 3vfd_A Spastin; ATPase, microt 85.9 0.77 2.6E-05 35.3 4.0 28 4-31 147-174 (389)
195 3pxi_A Negative regulator of g 85.8 0.58 2E-05 39.3 3.6 34 8-41 204-244 (758)
196 4b4t_L 26S protease subunit RP 85.8 0.97 3.3E-05 37.0 4.8 36 4-42 214-249 (437)
197 1r6b_X CLPA protein; AAA+, N-t 85.7 0.77 2.6E-05 38.3 4.2 66 5-84 207-279 (758)
198 4b4t_M 26S protease regulatory 85.4 1 3.5E-05 36.8 4.8 36 4-42 214-249 (434)
199 1g8f_A Sulfate adenylyltransfe 85.4 0.63 2.2E-05 38.9 3.5 27 5-31 395-421 (511)
200 2gks_A Bifunctional SAT/APS ki 85.2 0.81 2.8E-05 38.0 4.1 27 5-31 372-398 (546)
201 1a5t_A Delta prime, HOLB; zinc 85.2 0.74 2.5E-05 34.8 3.6 26 6-31 25-50 (334)
202 1lvg_A Guanylate kinase, GMP k 85.2 0.61 2.1E-05 32.7 2.9 26 4-29 3-28 (198)
203 2ehv_A Hypothetical protein PH 85.0 3.1 0.0001 28.7 6.4 53 6-58 31-88 (251)
204 1ihu_A Arsenical pump-driving 85.0 0.88 3E-05 37.1 4.1 38 3-40 6-45 (589)
205 3hu3_A Transitional endoplasmi 84.9 0.94 3.2E-05 37.0 4.3 34 4-40 237-270 (489)
206 3iqw_A Tail-anchored protein t 84.8 1.4 4.8E-05 34.2 5.1 37 4-40 15-53 (334)
207 4b4t_H 26S protease regulatory 84.7 0.96 3.3E-05 37.8 4.3 36 4-42 242-277 (467)
208 2qen_A Walker-type ATPase; unk 84.7 1.2 4E-05 32.1 4.3 32 7-41 33-64 (350)
209 3ea0_A ATPase, para family; al 84.6 1.6 5.4E-05 30.3 4.8 38 2-39 2-42 (245)
210 2r8r_A Sensor protein; KDPD, P 84.6 0.9 3.1E-05 34.5 3.8 37 3-39 4-42 (228)
211 1g3q_A MIND ATPase, cell divis 84.3 1.5 5.3E-05 30.3 4.7 36 4-39 2-39 (237)
212 2r44_A Uncharacterized protein 84.2 0.75 2.6E-05 34.0 3.2 24 8-31 49-72 (331)
213 1sxj_E Activator 1 40 kDa subu 84.2 0.67 2.3E-05 34.2 2.9 22 8-29 39-60 (354)
214 1x6v_B Bifunctional 3'-phospho 84.0 1.1 3.8E-05 38.5 4.5 36 4-39 51-86 (630)
215 1m8p_A Sulfate adenylyltransfe 83.8 1.4 4.7E-05 36.9 4.9 27 5-31 396-422 (573)
216 2ph1_A Nucleotide-binding prot 83.8 1.5 5.1E-05 31.6 4.6 36 3-38 17-54 (262)
217 1hyq_A MIND, cell division inh 83.5 1.7 5.8E-05 30.8 4.7 36 4-39 2-39 (263)
218 1xjc_A MOBB protein homolog; s 83.4 1.5 5E-05 31.4 4.3 34 6-39 5-40 (169)
219 4b4t_I 26S protease regulatory 83.3 1.2 4E-05 37.0 4.3 36 4-42 215-250 (437)
220 3zq6_A Putative arsenical pump 83.1 1.4 4.9E-05 33.3 4.4 35 5-39 14-50 (324)
221 3bh0_A DNAB-like replicative h 83.0 4 0.00014 30.8 6.8 56 4-59 67-128 (315)
222 2r6a_A DNAB helicase, replicat 83.0 6.4 0.00022 31.1 8.3 57 4-60 202-265 (454)
223 3q9l_A Septum site-determining 82.8 1.8 6E-05 30.4 4.5 36 4-39 2-39 (260)
224 2z4s_A Chromosomal replication 82.8 0.97 3.3E-05 35.9 3.5 36 6-41 131-168 (440)
225 2x8a_A Nuclear valosin-contain 82.7 2 6.7E-05 31.9 4.9 31 8-41 47-77 (274)
226 4dzz_A Plasmid partitioning pr 82.7 1.6 5.3E-05 29.5 4.0 35 5-39 2-38 (206)
227 2p6w_A VP54, putative glycosyl 82.5 0.28 9.5E-06 38.0 0.2 38 1-55 3-40 (213)
228 2bdt_A BH3686; alpha-beta prot 82.4 1.2 4E-05 30.2 3.3 24 6-29 3-26 (189)
229 3k9g_A PF-32 protein; ssgcid, 82.3 1.6 5.5E-05 31.2 4.2 37 3-39 26-63 (267)
230 3pvs_A Replication-associated 82.3 1.3 4.4E-05 35.7 4.0 25 7-31 52-76 (447)
231 1qvr_A CLPB protein; coiled co 82.1 1.7 5.6E-05 37.3 4.8 61 7-81 193-260 (854)
232 3nwj_A ATSK2; P loop, shikimat 81.9 1 3.5E-05 33.6 3.2 26 6-31 49-74 (250)
233 1ny5_A Transcriptional regulat 81.8 1.3 4.3E-05 34.6 3.7 27 5-31 160-186 (387)
234 1iy2_A ATP-dependent metallopr 81.6 2.2 7.6E-05 30.9 4.8 23 8-30 76-98 (278)
235 3la6_A Tyrosine-protein kinase 81.5 2.4 8.2E-05 32.0 5.1 36 3-38 91-128 (286)
236 1p5z_B DCK, deoxycytidine kina 81.5 0.71 2.4E-05 33.4 2.1 30 1-30 20-49 (263)
237 1np6_A Molybdopterin-guanine d 81.2 2 6.9E-05 30.4 4.3 34 6-39 7-42 (174)
238 1w5s_A Origin recognition comp 81.1 2 6.8E-05 31.9 4.4 35 6-40 51-93 (412)
239 3dzd_A Transcriptional regulat 81.0 1.7 6E-05 33.7 4.3 26 6-31 153-178 (368)
240 3tqf_A HPR(Ser) kinase; transf 81.0 1.5 5.2E-05 32.7 3.8 22 7-28 18-39 (181)
241 1in4_A RUVB, holliday junction 80.9 1.6 5.4E-05 33.0 3.9 25 6-30 52-76 (334)
242 3io3_A DEHA2D07832P; chaperone 80.7 2.2 7.4E-05 33.4 4.7 37 4-40 17-57 (348)
243 2ce7_A Cell division protein F 80.3 1.7 5.8E-05 35.7 4.1 31 8-41 52-82 (476)
244 3jvv_A Twitching mobility prot 80.2 1.6 5.6E-05 34.3 3.9 40 4-43 122-162 (356)
245 3fkq_A NTRC-like two-domain pr 80.1 2.4 8.1E-05 32.6 4.7 38 3-40 142-181 (373)
246 2dhr_A FTSH; AAA+ protein, hex 79.9 1.7 5.8E-05 35.9 4.1 31 8-41 67-97 (499)
247 2qmh_A HPR kinase/phosphorylas 79.9 1.8 6.2E-05 32.6 3.9 67 6-72 35-116 (205)
248 3m6a_A ATP-dependent protease 79.6 2 6.7E-05 35.3 4.3 27 5-31 108-134 (543)
249 1nlf_A Regulatory protein REPA 79.6 2.5 8.6E-05 30.7 4.5 49 6-54 31-93 (279)
250 1yrb_A ATP(GTP)binding protein 79.3 3.1 0.00011 29.2 4.8 35 4-38 13-48 (262)
251 3te6_A Regulatory protein SIR3 79.2 1.7 5.8E-05 34.0 3.7 39 4-42 44-89 (318)
252 3kjh_A CO dehydrogenase/acetyl 78.9 2.2 7.7E-05 29.2 3.9 31 8-38 3-35 (254)
253 1lkx_A Myosin IE heavy chain; 78.5 1.4 4.9E-05 38.2 3.3 24 7-30 96-119 (697)
254 2q6t_A DNAB replication FORK h 77.8 7.4 0.00025 30.6 7.0 57 4-60 199-262 (444)
255 4ds3_A Phosphoribosylglycinami 77.5 2.1 7E-05 31.9 3.5 72 1-78 5-84 (209)
256 3p32_A Probable GTPase RV1496/ 77.4 3.9 0.00013 31.3 5.2 36 3-38 77-114 (355)
257 1wcv_1 SOJ, segregation protei 77.3 1.9 6.6E-05 30.8 3.2 36 3-38 5-42 (257)
258 3a8t_A Adenylate isopentenyltr 77.2 2.6 9.1E-05 33.6 4.3 25 6-30 41-65 (339)
259 3cio_A ETK, tyrosine-protein k 76.9 3.6 0.00012 31.0 4.8 36 3-38 103-140 (299)
260 3dm5_A SRP54, signal recogniti 76.8 4.2 0.00014 33.4 5.5 35 4-38 99-135 (443)
261 2v26_A Myosin VI; calmodulin-b 76.6 1.7 5.9E-05 38.2 3.3 23 7-29 142-164 (784)
262 1byi_A Dethiobiotin synthase; 76.3 3.1 0.00011 28.6 4.0 33 5-37 2-36 (224)
263 1cp2_A CP2, nitrogenase iron p 76.2 3.4 0.00012 29.3 4.3 32 7-38 3-36 (269)
264 3lnc_A Guanylate kinase, GMP k 75.9 1.4 4.8E-05 31.0 2.2 25 5-29 27-52 (231)
265 1kk8_A Myosin heavy chain, str 75.6 1.9 6.4E-05 38.3 3.3 25 7-31 171-195 (837)
266 1w7j_A Myosin VA; motor protei 75.6 1.9 6.5E-05 38.0 3.3 24 7-30 158-181 (795)
267 1ye8_A Protein THEP1, hypothet 75.5 2.8 9.5E-05 29.3 3.6 24 7-30 2-25 (178)
268 2dfs_A Myosin-5A; myosin-V, in 75.3 1.9 6.5E-05 39.0 3.3 24 7-30 158-181 (1080)
269 2ycu_A Non muscle myosin 2C, a 75.2 1.9 6.5E-05 38.7 3.2 24 7-30 148-171 (995)
270 2ewv_A Twitching motility prot 75.0 2.9 9.8E-05 32.7 3.9 41 3-43 134-175 (372)
271 3bfv_A CAPA1, CAPB2, membrane 74.9 4.1 0.00014 30.2 4.6 36 3-38 81-118 (271)
272 4anj_A Unconventional myosin-V 74.9 2 6.8E-05 39.1 3.3 23 7-29 146-168 (1052)
273 1z6g_A Guanylate kinase; struc 74.5 2.1 7.3E-05 30.4 2.8 25 5-29 23-47 (218)
274 1p9r_A General secretion pathw 74.5 3.3 0.00011 33.3 4.2 41 3-43 165-205 (418)
275 3cwq_A Para family chromosome 74.4 3.9 0.00013 28.7 4.1 33 5-37 1-34 (209)
276 1w9i_A Myosin II heavy chain; 74.4 2.1 7.3E-05 37.7 3.3 24 7-30 174-197 (770)
277 1g8x_A Myosin II heavy chain f 74.3 2 6.8E-05 38.8 3.1 24 7-30 174-197 (1010)
278 3gmt_A Adenylate kinase; ssgci 74.3 3.3 0.00011 31.1 4.0 55 5-62 8-64 (230)
279 4a1f_A DNAB helicase, replicat 74.1 15 0.00052 28.8 7.9 58 4-61 45-108 (338)
280 3ez2_A Plasmid partition prote 74.0 4.6 0.00016 31.0 4.8 37 3-39 107-151 (398)
281 3aez_A Pantothenate kinase; tr 73.8 3.4 0.00012 31.6 4.0 41 3-43 88-132 (312)
282 1ihu_A Arsenical pump-driving 73.8 4.6 0.00016 32.8 5.0 36 3-38 325-362 (589)
283 1ypw_A Transitional endoplasmi 73.7 3.2 0.00011 35.9 4.2 35 4-41 237-271 (806)
284 4db1_A Myosin-7; S1DC, cardiac 73.5 2.3 7.9E-05 37.5 3.3 24 7-30 173-196 (783)
285 2orw_A Thymidine kinase; TMTK, 72.8 4.4 0.00015 28.3 4.1 25 5-29 3-27 (184)
286 2eyu_A Twitching motility prot 72.8 3.7 0.00013 30.5 3.9 39 4-42 24-63 (261)
287 3cf2_A TER ATPase, transitiona 72.7 3.2 0.00011 36.6 4.0 36 4-42 237-272 (806)
288 1i84_S Smooth muscle myosin he 72.5 1.9 6.5E-05 38.8 2.6 25 7-31 171-195 (1184)
289 3cf2_A TER ATPase, transitiona 72.2 3 0.0001 36.8 3.8 34 6-42 512-545 (806)
290 1ko7_A HPR kinase/phosphatase; 72.1 3.1 0.00011 32.7 3.5 22 7-28 146-167 (314)
291 2f1r_A Molybdopterin-guanine d 71.9 2.2 7.6E-05 30.0 2.4 33 7-39 4-38 (171)
292 3kl4_A SRP54, signal recogniti 71.5 5 0.00017 32.7 4.7 28 4-31 96-123 (433)
293 2afh_E Nitrogenase iron protei 71.1 4.5 0.00015 29.3 3.9 31 7-37 4-36 (289)
294 1c9k_A COBU, adenosylcobinamid 70.8 2.8 9.7E-05 30.4 2.8 24 7-31 1-24 (180)
295 2ocp_A DGK, deoxyguanosine kin 70.6 3.7 0.00013 29.0 3.3 25 6-30 3-27 (241)
296 3k1j_A LON protease, ATP-depen 70.2 3.9 0.00013 33.7 3.8 25 7-31 62-86 (604)
297 3bgw_A DNAB-like replicative h 70.1 13 0.00045 29.7 6.8 55 4-58 196-256 (444)
298 3igf_A ALL4481 protein; two-do 70.1 3.2 0.00011 33.1 3.1 34 6-39 3-38 (374)
299 2oze_A ORF delta'; para, walke 69.6 5.3 0.00018 28.9 4.0 35 4-38 34-72 (298)
300 3upu_A ATP-dependent DNA helic 69.4 11 0.00036 29.7 6.0 46 7-52 47-95 (459)
301 1u0j_A DNA replication protein 69.1 3.6 0.00012 31.7 3.2 26 4-29 103-128 (267)
302 3end_A Light-independent proto 68.9 7.2 0.00025 28.5 4.7 35 4-39 41-77 (307)
303 3da8_A Probable 5'-phosphoribo 68.9 9.5 0.00032 28.3 5.4 69 3-78 12-87 (215)
304 3ez9_A Para; DNA binding, wing 68.9 3.8 0.00013 31.6 3.3 28 3-30 110-137 (403)
305 2xxa_A Signal recognition part 68.6 5 0.00017 32.3 4.1 52 4-55 99-159 (433)
306 1tue_A Replication protein E1; 68.3 3.7 0.00013 31.1 3.0 27 5-31 58-84 (212)
307 3kta_A Chromosome segregation 68.2 4.6 0.00016 26.9 3.2 24 7-30 28-51 (182)
308 3gn3_A Putative protein-disulf 67.0 4.2 0.00014 28.6 3.0 48 42-89 114-161 (182)
309 4gp7_A Metallophosphoesterase; 65.9 6.1 0.00021 26.7 3.5 20 5-24 9-28 (171)
310 1znw_A Guanylate kinase, GMP k 65.8 5.3 0.00018 27.7 3.2 24 6-29 21-44 (207)
311 1tf7_A KAIC; homohexamer, hexa 65.8 14 0.00047 29.8 6.1 54 6-59 40-98 (525)
312 3e1s_A Exodeoxyribonuclease V, 65.6 13 0.00044 30.9 6.1 55 7-61 206-265 (574)
313 3k32_A Uncharacterized protein 65.6 16 0.00056 25.8 5.9 58 1-63 4-68 (203)
314 3lda_A DNA repair protein RAD5 65.6 10 0.00036 30.2 5.3 55 5-59 178-244 (400)
315 3lou_A Formyltetrahydrofolate 64.8 19 0.00065 27.8 6.5 70 3-78 95-169 (292)
316 1g41_A Heat shock protein HSLU 64.5 8.2 0.00028 31.6 4.6 25 7-31 52-76 (444)
317 1knx_A Probable HPR(Ser) kinas 63.7 4 0.00014 32.1 2.5 22 7-28 149-170 (312)
318 1q57_A DNA primase/helicase; d 63.7 6.2 0.00021 31.4 3.7 54 4-57 241-301 (503)
319 1ls1_A Signal recognition part 63.6 7 0.00024 29.4 3.8 33 6-38 99-133 (295)
320 4i1u_A Dephospho-COA kinase; s 63.6 13 0.00046 27.3 5.2 24 6-30 10-33 (210)
321 2wsm_A Hydrogenase expression/ 63.5 14 0.00048 25.0 5.0 33 5-37 30-63 (221)
322 2ffh_A Protein (FFH); SRP54, s 63.0 9.6 0.00033 30.9 4.7 50 5-54 98-155 (425)
323 2v3c_C SRP54, signal recogniti 63.0 6.2 0.00021 31.8 3.6 34 5-38 99-134 (432)
324 1vma_A Cell division protein F 62.9 11 0.00037 28.9 4.8 28 4-31 103-130 (306)
325 3nbx_X ATPase RAVA; AAA+ ATPas 62.7 3.6 0.00012 33.9 2.2 24 8-31 44-67 (500)
326 1tf7_A KAIC; homohexamer, hexa 62.3 18 0.00061 29.1 6.1 55 5-59 281-339 (525)
327 4ag6_A VIRB4 ATPase, type IV s 62.2 7.2 0.00025 29.7 3.7 24 8-31 38-61 (392)
328 4a74_A DNA repair and recombin 62.2 6.1 0.00021 26.8 2.9 55 4-58 24-90 (231)
329 3cr8_A Sulfate adenylyltranfer 62.2 4.2 0.00014 34.0 2.5 28 4-31 368-395 (552)
330 1pui_A ENGB, probable GTP-bind 62.1 4 0.00014 27.4 2.0 24 3-26 24-47 (210)
331 3o1l_A Formyltetrahydrofolate 61.9 24 0.00082 27.5 6.7 70 3-78 105-179 (302)
332 1svm_A Large T antigen; AAA+ f 61.4 7.1 0.00024 31.0 3.6 27 4-30 168-194 (377)
333 1zu4_A FTSY; GTPase, signal re 61.4 8.9 0.00031 29.4 4.1 34 4-37 104-139 (320)
334 3n0v_A Formyltetrahydrofolate 61.1 27 0.00093 26.8 6.8 70 3-78 90-164 (286)
335 3hjn_A DTMP kinase, thymidylat 61.1 7.6 0.00026 27.4 3.4 37 6-42 1-37 (197)
336 1pzn_A RAD51, DNA repair and r 60.6 17 0.00057 28.0 5.5 56 4-59 130-197 (349)
337 1j8m_F SRP54, signal recogniti 60.5 9.4 0.00032 28.9 4.0 50 5-54 98-155 (297)
338 2gza_A Type IV secretion syste 60.5 4.5 0.00015 31.3 2.3 38 4-42 174-211 (361)
339 2f9l_A RAB11B, member RAS onco 59.9 11 0.00036 25.3 3.8 28 1-28 1-28 (199)
340 2fn4_A P23, RAS-related protei 59.6 12 0.00042 23.8 4.0 26 3-28 7-32 (181)
341 2lkc_A Translation initiation 59.3 9.5 0.00033 24.4 3.4 27 1-27 4-30 (178)
342 2vhj_A Ntpase P4, P4; non- hyd 59.1 5.8 0.0002 31.7 2.7 33 6-39 124-156 (331)
343 1upt_A ARL1, ADP-ribosylation 58.9 13 0.00046 23.4 4.0 26 2-27 4-29 (171)
344 2gno_A DNA polymerase III, gam 58.7 6.8 0.00023 29.8 2.9 24 6-29 19-42 (305)
345 3pg5_A Uncharacterized protein 57.6 6.9 0.00024 30.0 2.9 34 5-38 2-37 (361)
346 1cr0_A DNA primase/helicase; R 57.0 20 0.00068 25.9 5.1 39 5-43 35-76 (296)
347 2v9p_A Replication protein E1; 56.1 9.7 0.00033 29.5 3.5 26 4-29 125-150 (305)
348 2gco_A H9, RHO-related GTP-bin 56.1 12 0.00041 25.1 3.6 27 1-27 21-47 (201)
349 2j37_W Signal recognition part 55.9 15 0.00051 30.4 4.8 36 4-39 100-137 (504)
350 2yc2_C IFT27, small RAB-relate 55.6 3 0.0001 27.6 0.4 25 3-27 18-42 (208)
351 1r2q_A RAS-related protein RAB 55.1 9.9 0.00034 23.9 2.9 26 2-27 3-28 (170)
352 3obi_A Formyltetrahydrofolate 55.0 11 0.00039 29.0 3.7 70 3-78 89-164 (288)
353 2px0_A Flagellar biosynthesis 54.9 10 0.00035 28.7 3.4 34 5-38 105-141 (296)
354 2fz4_A DNA repair protein RAD2 54.7 30 0.001 24.7 5.7 41 8-49 111-151 (237)
355 2b8t_A Thymidine kinase; deoxy 54.6 19 0.00065 26.4 4.7 36 3-38 10-47 (223)
356 2p67_A LAO/AO transport system 54.4 17 0.0006 27.5 4.6 35 4-38 55-91 (341)
357 3rjz_A N-type ATP pyrophosphat 54.4 17 0.00058 27.5 4.5 71 1-76 1-86 (237)
358 1ypw_A Transitional endoplasmi 53.5 5.1 0.00017 34.6 1.6 28 4-31 510-537 (806)
359 3bl5_A Queuosine biosynthesis 53.5 20 0.00067 24.7 4.4 49 1-55 1-59 (219)
360 2vp4_A Deoxynucleoside kinase; 52.6 12 0.00042 26.3 3.3 34 3-38 18-51 (230)
361 1ky3_A GTP-binding protein YPT 52.4 18 0.0006 23.0 3.8 26 3-28 6-31 (182)
362 2fv8_A H6, RHO-related GTP-bin 52.4 11 0.00038 25.4 3.0 27 1-27 21-47 (207)
363 3b85_A Phosphate starvation-in 52.4 10 0.00035 27.2 2.9 22 7-28 24-45 (208)
364 3clv_A RAB5 protein, putative; 52.4 14 0.00049 23.7 3.4 25 4-28 6-30 (208)
365 3llm_A ATP-dependent RNA helic 52.2 6.6 0.00023 27.7 1.8 15 7-21 78-92 (235)
366 1nij_A Hypothetical protein YJ 52.2 17 0.0006 27.2 4.3 25 4-28 3-27 (318)
367 2hf9_A Probable hydrogenase ni 51.5 32 0.0011 23.3 5.2 26 5-30 38-63 (226)
368 2pt7_A CAG-ALFA; ATPase, prote 51.0 7.3 0.00025 29.9 2.0 36 6-42 172-207 (330)
369 2ga8_A Hypothetical 39.9 kDa p 50.9 15 0.00053 29.5 4.0 26 5-30 24-49 (359)
370 2ce2_X GTPase HRAS; signaling 50.7 20 0.00069 22.1 3.8 25 4-28 2-26 (166)
371 2oap_1 GSPE-2, type II secreti 50.4 7.9 0.00027 31.9 2.2 37 5-42 260-296 (511)
372 1u8z_A RAS-related protein RAL 50.1 24 0.00083 21.9 4.1 25 3-27 2-26 (168)
373 2i3b_A HCR-ntpase, human cance 49.6 14 0.00047 26.1 3.1 23 7-29 3-25 (189)
374 2ged_A SR-beta, signal recogni 49.1 16 0.00056 23.8 3.3 26 3-28 46-71 (193)
375 4a2c_A Galactitol-1-phosphate 49.0 38 0.0013 24.9 5.6 46 7-55 163-208 (346)
376 1w36_D RECD, exodeoxyribonucle 48.6 32 0.0011 28.4 5.7 25 6-30 165-189 (608)
377 4hlc_A DTMP kinase, thymidylat 48.1 20 0.0007 25.4 3.9 35 7-42 4-38 (205)
378 4dsu_A GTPase KRAS, isoform 2B 47.9 20 0.0007 23.0 3.6 26 3-28 2-27 (189)
379 1hv8_A Putative ATP-dependent 47.1 60 0.0021 23.0 6.3 43 7-49 46-92 (367)
380 3f9v_A Minichromosome maintena 46.9 4.4 0.00015 33.7 0.2 24 7-30 329-352 (595)
381 3qks_A DNA double-strand break 46.7 18 0.00061 25.4 3.4 25 6-30 24-48 (203)
382 3cbq_A GTP-binding protein REM 46.5 12 0.00041 25.3 2.4 23 3-25 21-43 (195)
383 3auy_A DNA double-strand break 46.2 13 0.00044 28.4 2.8 22 6-27 26-47 (371)
384 1kao_A RAP2A; GTP-binding prot 46.2 28 0.00096 21.5 3.9 24 4-27 2-25 (167)
385 1z08_A RAS-related protein RAB 45.2 24 0.00083 22.2 3.6 26 3-28 4-29 (170)
386 1z06_A RAS-related protein RAB 45.0 26 0.00089 22.9 3.8 25 3-27 18-42 (189)
387 2gs3_A PHGPX, GPX-4, phospholi 44.7 63 0.0021 21.5 5.8 52 4-58 50-118 (185)
388 2y8e_A RAB-protein 6, GH09086P 44.5 23 0.0008 22.4 3.4 24 4-27 13-36 (179)
389 1z2a_A RAS-related protein RAB 44.3 29 0.00099 21.7 3.8 26 3-28 3-28 (168)
390 3e70_C DPA, signal recognition 44.0 32 0.0011 26.5 4.7 29 3-31 127-155 (328)
391 2cbz_A Multidrug resistance-as 43.9 17 0.00058 26.3 3.0 24 7-30 33-56 (237)
392 1e9r_A Conjugal transfer prote 43.5 35 0.0012 26.1 4.9 33 8-40 56-90 (437)
393 2hxs_A RAB-26, RAS-related pro 43.3 34 0.0012 21.7 4.1 26 2-27 3-28 (178)
394 2nzj_A GTP-binding protein REM 43.2 30 0.001 21.8 3.8 24 3-26 2-25 (175)
395 2j1l_A RHO-related GTP-binding 43.2 25 0.00086 23.9 3.6 25 3-27 32-56 (214)
396 1wms_A RAB-9, RAB9, RAS-relate 43.2 24 0.00083 22.4 3.4 25 3-27 5-29 (177)
397 1rj9_A FTSY, signal recognitio 43.1 25 0.00085 26.7 3.9 27 5-31 102-128 (304)
398 3kkq_A RAS-related protein M-R 42.9 35 0.0012 21.9 4.1 26 3-28 16-41 (183)
399 1ek0_A Protein (GTP-binding pr 42.9 26 0.0009 21.8 3.4 24 4-27 2-25 (170)
400 3qf7_A RAD50; ABC-ATPase, ATPa 42.6 18 0.00062 27.9 3.1 20 7-26 25-44 (365)
401 1f2t_A RAD50 ABC-ATPase; DNA d 42.5 26 0.00088 23.5 3.5 23 7-29 25-47 (149)
402 3gj0_A GTP-binding nuclear pro 42.4 16 0.00055 24.8 2.5 27 3-29 13-40 (221)
403 1z0j_A RAB-22, RAS-related pro 42.1 26 0.00088 22.0 3.3 26 3-28 4-29 (170)
404 1c1y_A RAS-related protein RAP 41.9 36 0.0012 21.2 4.0 24 4-27 2-25 (167)
405 3pih_A Uvrabc system protein A 41.9 9.1 0.00031 34.2 1.4 16 7-22 26-41 (916)
406 2dyk_A GTP-binding protein; GT 41.8 23 0.00079 22.0 3.0 21 8-28 4-24 (161)
407 2a9k_A RAS-related protein RAL 41.7 33 0.0011 21.8 3.8 25 3-27 16-40 (187)
408 1z0f_A RAB14, member RAS oncog 41.6 31 0.0011 21.7 3.7 25 4-28 14-38 (179)
409 3ihw_A Centg3; RAS, centaurin, 41.6 38 0.0013 22.5 4.2 27 2-28 17-43 (184)
410 2www_A Methylmalonic aciduria 41.4 39 0.0013 25.8 4.8 26 4-29 73-98 (349)
411 3qxc_A Dethiobiotin synthetase 41.4 43 0.0015 24.7 4.9 36 3-38 20-57 (242)
412 2fu5_C RAS-related protein RAB 41.3 13 0.00046 24.0 1.9 23 4-26 7-29 (183)
413 2vf7_A UVRA2, excinuclease ABC 41.1 11 0.00038 33.3 1.9 16 7-22 38-53 (842)
414 1htw_A HI0065; nucleotide-bind 41.1 31 0.0011 23.6 3.8 26 4-29 32-57 (158)
415 2bw0_A 10-FTHFDH, 10-formyltet 41.0 58 0.002 25.3 5.8 50 1-57 20-77 (329)
416 3av3_A Phosphoribosylglycinami 40.9 29 0.00099 25.2 3.8 70 4-77 4-79 (212)
417 3fwy_A Light-independent proto 40.9 31 0.0011 26.3 4.1 33 7-39 50-84 (314)
418 1nrj_B SR-beta, signal recogni 40.8 26 0.00088 23.5 3.3 26 4-29 11-36 (218)
419 2ff7_A Alpha-hemolysin translo 40.6 20 0.00069 26.1 3.0 24 7-30 37-60 (247)
420 2d2e_A SUFC protein; ABC-ATPas 40.5 22 0.00075 25.9 3.1 22 7-28 31-52 (250)
421 3kij_A Probable glutathione pe 40.4 77 0.0026 20.9 5.7 52 5-58 39-108 (180)
422 2eq9_C Pyruvate dehydrogenase 40.2 19 0.00065 19.5 2.1 24 41-64 4-27 (41)
423 2g6b_A RAS-related protein RAB 40.2 36 0.0012 21.6 3.8 25 3-27 8-32 (180)
424 2ixe_A Antigen peptide transpo 39.8 21 0.00071 26.5 3.0 26 6-31 46-71 (271)
425 1mv5_A LMRA, multidrug resista 39.8 21 0.00073 25.8 2.9 26 5-30 28-53 (243)
426 3b6e_A Interferon-induced heli 39.8 66 0.0022 21.2 5.2 42 8-49 51-101 (216)
427 1vg8_A RAS-related protein RAB 39.7 35 0.0012 22.4 3.8 26 3-28 6-31 (207)
428 2b6h_A ADP-ribosylation factor 39.6 30 0.001 23.1 3.5 25 2-26 26-50 (192)
429 2bov_A RAla, RAS-related prote 39.6 41 0.0014 22.0 4.1 25 3-27 12-36 (206)
430 3tif_A Uncharacterized ABC tra 39.5 22 0.00075 25.7 3.0 25 6-30 32-56 (235)
431 1zd9_A ADP-ribosylation factor 39.3 35 0.0012 22.4 3.7 25 3-27 20-44 (188)
432 1t6n_A Probable ATP-dependent 39.3 86 0.0029 21.1 6.5 42 8-49 54-100 (220)
433 2pze_A Cystic fibrosis transme 39.2 24 0.00082 25.3 3.1 24 7-30 36-59 (229)
434 2hma_A Probable tRNA (5-methyl 39.0 23 0.00079 27.9 3.2 79 3-91 9-109 (376)
435 2erx_A GTP-binding protein DI- 39.0 36 0.0012 21.2 3.6 24 4-27 2-25 (172)
436 2ghi_A Transport protein; mult 38.6 23 0.00077 26.1 3.0 24 6-29 47-70 (260)
437 2pcj_A ABC transporter, lipopr 38.5 21 0.00073 25.5 2.7 24 7-30 32-55 (224)
438 2zu0_C Probable ATP-dependent 38.4 24 0.00083 26.0 3.1 23 6-28 47-69 (267)
439 1wp9_A ATP-dependent RNA helic 38.4 1E+02 0.0035 22.3 6.4 42 8-49 26-70 (494)
440 1f8f_A Benzyl alcohol dehydrog 38.3 67 0.0023 24.0 5.6 45 7-54 193-237 (371)
441 1p0f_A NADP-dependent alcohol 38.3 61 0.0021 24.3 5.4 45 7-54 194-238 (373)
442 2xtp_A GTPase IMAP family memb 38.3 27 0.00093 24.5 3.2 24 4-27 21-44 (260)
443 2wji_A Ferrous iron transport 38.2 39 0.0013 21.7 3.8 24 4-27 2-25 (165)
444 2ygr_A Uvrabc system protein A 38.2 12 0.00042 34.0 1.7 15 7-21 48-62 (993)
445 1fzq_A ADP-ribosylation factor 38.1 34 0.0012 22.5 3.5 25 3-27 14-38 (181)
446 2eq8_C Pyruvate dehydrogenase 37.9 19 0.00065 19.4 1.9 24 41-64 3-26 (40)
447 2r6f_A Excinuclease ABC subuni 37.9 12 0.00043 33.9 1.7 15 7-21 46-60 (972)
448 1m2o_B GTP-binding protein SAR 37.7 26 0.00088 23.3 2.9 26 2-27 20-45 (190)
449 3con_A GTPase NRAS; structural 37.6 36 0.0012 22.1 3.6 25 4-28 20-44 (190)
450 2d00_A V-type ATP synthase sub 37.5 27 0.00094 23.2 3.0 28 4-31 73-105 (109)
451 1ji0_A ABC transporter; ATP bi 37.3 25 0.00084 25.4 3.0 24 7-30 34-57 (240)
452 3t5g_A GTP-binding protein RHE 37.3 34 0.0012 21.9 3.4 23 4-26 5-27 (181)
453 1zbd_A Rabphilin-3A; G protein 37.2 37 0.0013 22.3 3.6 25 3-27 6-30 (203)
454 1vj0_A Alcohol dehydrogenase, 37.2 70 0.0024 24.2 5.6 45 7-54 198-242 (380)
455 3cwo_X Beta/alpha-barrel prote 37.1 34 0.0012 22.9 3.5 24 8-31 147-172 (237)
456 2gxq_A Heat resistant RNA depe 37.1 88 0.003 20.6 6.5 42 8-49 41-90 (207)
457 1lw7_A Transcriptional regulat 37.1 25 0.00085 26.7 3.0 27 5-31 170-196 (365)
458 4ido_A Atlastin-1; GTPase, GTP 36.9 33 0.0011 28.4 4.0 27 3-29 65-91 (457)
459 4djt_A GTP-binding nuclear pro 36.7 21 0.00072 23.9 2.4 23 4-26 10-32 (218)
460 2wjg_A FEOB, ferrous iron tran 36.5 46 0.0016 21.4 4.0 24 4-27 6-29 (188)
461 1moz_A ARL1, ADP-ribosylation 36.3 24 0.00084 22.6 2.5 24 3-26 16-39 (183)
462 2eq7_C 2-oxoglutarate dehydrog 36.3 18 0.0006 19.6 1.6 24 41-64 3-26 (40)
463 1sgw_A Putative ABC transporte 36.1 24 0.00081 25.5 2.7 24 7-30 37-60 (214)
464 2fh5_B SR-beta, signal recogni 36.1 30 0.001 23.1 3.1 25 3-27 5-29 (214)
465 3or5_A Thiol:disulfide interch 36.0 80 0.0027 19.8 5.3 55 4-61 35-99 (165)
466 1kol_A Formaldehyde dehydrogen 35.9 74 0.0025 24.0 5.6 45 7-54 188-232 (398)
467 1ksh_A ARF-like protein 2; sma 35.9 35 0.0012 22.1 3.3 25 3-27 16-40 (186)
468 3uko_A Alcohol dehydrogenase c 35.9 63 0.0022 24.3 5.1 45 8-55 197-241 (378)
469 2qi9_C Vitamin B12 import ATP- 35.9 26 0.0009 25.7 2.9 24 7-30 28-51 (249)
470 3s2e_A Zinc-containing alcohol 35.8 73 0.0025 23.4 5.4 44 7-55 169-213 (340)
471 1pl8_A Human sorbitol dehydrog 35.4 80 0.0027 23.5 5.6 45 7-54 174-218 (356)
472 2gf0_A GTP-binding protein DI- 35.4 44 0.0015 21.7 3.7 25 3-27 6-30 (199)
473 1e69_A Chromosome segregation 35.3 27 0.00091 26.1 2.9 25 4-29 24-48 (322)
474 2fg5_A RAB-22B, RAS-related pr 35.1 38 0.0013 22.3 3.4 25 3-27 21-45 (192)
475 2yz2_A Putative ABC transporte 35.1 28 0.00095 25.6 3.0 24 7-30 35-58 (266)
476 2der_A TRNA-specific 2-thiouri 35.1 54 0.0018 25.9 4.8 79 3-91 17-117 (380)
477 3aon_B V-type sodium ATPase su 35.0 31 0.0011 23.3 3.0 28 4-31 70-100 (115)
478 2nq2_C Hypothetical ABC transp 34.9 31 0.001 25.3 3.2 24 7-30 33-56 (253)
479 3nau_A Zinc fingers and homeob 34.9 49 0.0017 20.8 3.7 30 39-82 29-58 (66)
480 1g16_A RAS-related protein SEC 34.9 46 0.0016 20.7 3.6 24 4-27 2-25 (170)
481 1jfu_A Thiol:disulfide interch 34.8 60 0.0021 21.2 4.4 57 4-63 61-128 (186)
482 1x3s_A RAS-related protein RAB 34.5 41 0.0014 21.6 3.4 25 4-28 14-38 (195)
483 2bme_A RAB4A, RAS-related prot 34.4 43 0.0015 21.5 3.5 25 4-28 9-33 (186)
484 1u8s_A Glycine cleavage system 34.2 52 0.0018 22.7 4.1 35 1-38 1-36 (192)
485 1s2m_A Putative ATP-dependent 34.2 1.3E+02 0.0045 21.8 6.5 42 8-49 61-107 (400)
486 1b0u_A Histidine permease; ABC 34.1 29 0.001 25.5 2.9 24 7-30 34-57 (262)
487 4ej6_A Putative zinc-binding d 34.1 70 0.0024 24.1 5.2 45 7-54 185-229 (370)
488 4hde_A SCO1/SENC family lipopr 34.1 43 0.0015 22.4 3.6 38 32-69 67-113 (170)
489 3t1o_A Gliding protein MGLA; G 34.1 38 0.0013 21.7 3.2 27 4-30 13-39 (198)
490 3gfo_A Cobalt import ATP-bindi 34.0 29 0.00098 26.0 2.9 25 7-31 36-60 (275)
491 3bc1_A RAS-related protein RAB 34.0 48 0.0017 21.1 3.7 23 5-27 11-33 (195)
492 2a5j_A RAS-related protein RAB 33.9 50 0.0017 21.6 3.9 25 3-27 19-43 (191)
493 2oil_A CATX-8, RAS-related pro 33.7 48 0.0016 21.6 3.7 24 4-27 24-47 (193)
494 1vpl_A ABC transporter, ATP-bi 33.7 30 0.001 25.6 2.9 25 6-30 42-66 (256)
495 2efe_B Small GTP-binding prote 33.5 47 0.0016 21.1 3.6 24 4-27 11-34 (181)
496 1xvw_A Hypothetical protein RV 33.5 72 0.0025 20.2 4.5 54 5-61 38-100 (160)
497 1e3i_A Alcohol dehydrogenase, 33.4 75 0.0026 23.8 5.2 45 7-54 198-242 (376)
498 2qm8_A GTPase/ATPase; G protei 33.3 61 0.0021 24.7 4.7 35 4-38 54-90 (337)
499 1g6h_A High-affinity branched- 33.1 34 0.0012 25.0 3.1 24 7-30 35-58 (257)
500 4g1u_C Hemin import ATP-bindin 33.0 31 0.0011 25.6 2.9 24 7-30 39-62 (266)
No 1
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=100.00 E-value=6.4e-35 Score=221.12 Aligned_cols=94 Identities=48% Similarity=0.918 Sum_probs=82.5
Q ss_pred CCCCeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHHHcCccHHHhcCCCCcHHHhHHHHHHHHHHHh
Q psy4713 1 MTQPKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQNGLEMDKLLGATKYKEKYRAEMITWSEAER 80 (103)
Q Consensus 1 ~~~pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~~~glDl~~LL~d~~YKE~~R~~mi~wge~~R 80 (103)
|..|++||+||||+||||||||++|.++++...+.+++||+|||++||+++|||+++||+|++|||+||++|+.||++.|
T Consensus 7 ~~~~~~II~itGk~~SGKd~va~~l~~~~g~~~~~vv~msD~iK~~~a~~~gl~~~~~l~~~~ykE~~R~~m~~~g~~~R 86 (202)
T 3ch4_B 7 GGAPRLVLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPLKEQYAQEHGLNFQRLLDTSTYKEAFRKDMIRWGEEKR 86 (202)
T ss_dssp BCCCSEEEEEEECTTSSHHHHHHHHHHHHCTTTEEEECTHHHHHHHHHHTTTCCCC-------CCSSHHHHHHHHHHHHH
T ss_pred ccCCCEEEEEECCCCCChHHHHHHHHHHcCCCCceEEEccHHHHHHHHHHcCCCchhhcchhhhHHHHHHHHHHHHHHHH
Confidence 45799999999999999999999999999876799999999999999999999999999999999999999999999999
Q ss_pred ccChhhhHHHHHHH
Q psy4713 81 RKDNGCFIRSAIEM 94 (103)
Q Consensus 81 ~~D~g~Fcr~~~~~ 94 (103)
++||++||+.+++.
T Consensus 87 ~~d~~~~~~~~~~~ 100 (202)
T 3ch4_B 87 QADPGFFCRKIVEG 100 (202)
T ss_dssp HHCTTTTHHHHSBT
T ss_pred hcCchHHHHHHHHh
Confidence 99999999988753
No 2
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=99.40 E-value=5.1e-13 Score=101.99 Aligned_cols=87 Identities=21% Similarity=0.307 Sum_probs=73.8
Q ss_pred EEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHHHcC----------ccHHHhcC---CC----------
Q psy4713 6 LILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQNG----------LEMDKLLG---AT---------- 62 (103)
Q Consensus 6 lIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~~~g----------lDl~~LL~---d~---------- 62 (103)
.||.+||..+|||+.+++.|.+.+| +.++++++|+|++.++.+| |+.+.+.+ |+
T Consensus 2 ~~i~ltG~~~sGK~tv~~~l~~~~g---~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~g~~~dRe~~~~~~~~~ 78 (241)
T 1dek_A 2 KLIFLSGVKRSGKDTTADFIMSNYS---AVKYQLAGPIKDALAYAWGVFAANTDYPCLTRKEFEGIDYDRETNLNLTKLE 78 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSC---EEECCTTHHHHHHHHHHHHHHSTTSSSCCCCHHHHTTTTSCTTSCCCCCHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC---CeEEecChHHHHHHHHHccccccccccccCCHhhhcccccccccccccchhH
Confidence 5899999999999999999999876 6789999999999999999 77655554 22
Q ss_pred --------------------Cc-------------------------HH--HhHHHHHHHHHH-Hhc-cChhhhHHHHHH
Q psy4713 63 --------------------KY-------------------------KE--KYRAEMITWSEA-ERR-KDNGCFIRSAIE 93 (103)
Q Consensus 63 --------------------~Y-------------------------KE--~~R~~mi~wge~-~R~-~D~g~Fcr~~~~ 93 (103)
+| || .+|..|+.||++ .|+ .+|++||+.+++
T Consensus 79 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~R~l~~~~G~d~~R~~~~~~~~~~~~~~ 158 (241)
T 1dek_A 79 VITIMEQAFCYLNGKSPIKGVFVFDDEGKESVNFVAFNKITDVINNIEDQWSVRRLMQALGTDLIVNNFDRMYWVKLFAL 158 (241)
T ss_dssp HHHHHHHHHHHHHTTSCCTTCCEEESSSCEEECHHHHHHHHHHHHTCCSCCCHHHHHHHHHTTTHHHHTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccccccccccccccccccccchhhhhhhhhhcccCCCCHHHHHHHHHHHHHHHHccchHHHHHHHH
Confidence 22 45 899999999995 688 999999998877
Q ss_pred HH
Q psy4713 94 MA 95 (103)
Q Consensus 94 ~~ 95 (103)
..
T Consensus 159 ~i 160 (241)
T 1dek_A 159 DY 160 (241)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 3
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.02 E-value=0.0011 Score=43.39 Aligned_cols=41 Identities=22% Similarity=0.412 Sum_probs=33.7
Q ss_pred eEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHH
Q psy4713 5 KLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAK 49 (103)
Q Consensus 5 klIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~ 49 (103)
+.+|+|+|-+||||.-++..| +.++ ..++++++.+.+.+..
T Consensus 1 k~~I~l~G~~GsGKsT~a~~L-~~~g---~~~i~~~~~~~~~~~~ 41 (179)
T 3lw7_A 1 IKVILITGMPGSGKSEFAKLL-KERG---AKVIVMSDVVRKRYSI 41 (179)
T ss_dssp -CEEEEECCTTSCHHHHHHHH-HHTT---CEEEEHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHH-HHCC---CcEEEHhHHHHHHHHh
Confidence 358899999999999999999 6664 6688888888877665
No 4
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.82 E-value=0.0027 Score=42.75 Aligned_cols=53 Identities=11% Similarity=0.276 Sum_probs=39.8
Q ss_pred EEEEEecCcCCchhHHHHHHHHHhcccc--eEEEecchhhHHHHHHHcCc--cHHHhc
Q psy4713 6 LILLFSGKRKSGKDFLTDYLLERIGSQH--CAIIRLSAPIKSHWAKQNGL--EMDKLL 59 (103)
Q Consensus 6 lIiL~sGKrksGKDy~a~~l~~~l~~~~--~~iv~iS~piK~~yA~~~gl--Dl~~LL 59 (103)
.+|+|+|-.||||.-++..|++.++... ..++++++-+++. +...|. +.+++.
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~~~~r~~-~~~~~~~~~~~~~~ 60 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEV-AKEENLVSDRDQMR 60 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHHHHHHH-HHHTTSCSSGGGGS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEehHHHHHHH-HhccCCCCCHHHHh
Confidence 5789999999999999999999997533 6778887777665 344554 444443
No 5
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.80 E-value=0.0011 Score=44.70 Aligned_cols=37 Identities=22% Similarity=0.262 Sum_probs=28.7
Q ss_pred EEEEecCcCCchhHHHHHHHHHhcccceEEEecchhh
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPI 43 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~pi 43 (103)
+|+|+|-.||||--++..|++.+....+.++..-.|.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d~~~ 38 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYREPG 38 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 6899999999999999999999854344555544443
No 6
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=96.66 E-value=0.003 Score=46.89 Aligned_cols=54 Identities=17% Similarity=0.193 Sum_probs=37.2
Q ss_pred CCCCeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHHHcCccHHHhc
Q psy4713 1 MTQPKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQNGLEMDKLL 59 (103)
Q Consensus 1 ~~~pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~~~glDl~~LL 59 (103)
|.+.+.||.|+|..||||.-++..|++++| +.++. +.+=++.|+..|++.+.+-
T Consensus 10 m~~~~~iI~i~g~~gsGk~~i~~~la~~lg---~~~~d--~~~~~~~a~~~g~~~~~~~ 63 (223)
T 3hdt_A 10 MGNKNLIITIEREYGSGGRIVGKKLAEELG---IHFYD--DDILKLASEKSAVGEQFFR 63 (223)
T ss_dssp --CCCEEEEEEECTTSCHHHHHHHHHHHHT---CEEEC--HHHHHHHHHCC--------
T ss_pred cCCCCeEEEEeCCCCCCHHHHHHHHHHHcC---CcEEc--HHHHHHHHHHcCCCHHHHH
Confidence 566688999999999999999999999996 45544 5566678999999876553
No 7
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.45 E-value=0.0019 Score=43.94 Aligned_cols=41 Identities=17% Similarity=0.309 Sum_probs=31.8
Q ss_pred CCeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHH
Q psy4713 3 QPKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSH 46 (103)
Q Consensus 3 ~pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~ 46 (103)
.+..+|+|+|-.||||--++..|++.++ ..+++..+-+.+.
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l~---~~~i~~d~~~~~~ 47 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKYG---YTHLSTGDLLRSE 47 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHHC---CEEEEHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHhC---CeEEcHHHHHHHH
Confidence 3456788999999999999999999986 4566666555543
No 8
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.36 E-value=0.01 Score=40.49 Aligned_cols=48 Identities=21% Similarity=0.225 Sum_probs=34.3
Q ss_pred CCCCeEEEEEecCcCCchhHHHHHHHHHhcccceEEEe----cchhhHHHHHHH
Q psy4713 1 MTQPKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIR----LSAPIKSHWAKQ 50 (103)
Q Consensus 1 ~~~pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~----iS~piK~~yA~~ 50 (103)
|+++ .+|+|+|-.||||.-++..|++.++... .++. +++.+++.+...
T Consensus 1 mm~~-~~I~i~G~~GsGKsT~~~~L~~~l~~~g-~~~~~~~~~~~~i~~~~~~~ 52 (213)
T 2plr_A 1 MKKG-VLIAFEGIDGSGKSSQATLLKDWIELKR-DVYLTEWNSSDWIHDIIKEA 52 (213)
T ss_dssp -CCC-EEEEEECCTTSSHHHHHHHHHHHHTTTS-CEEEEETTCCCHHHHHHHHH
T ss_pred CCCC-eEEEEEcCCCCCHHHHHHHHHHHHhhcC-CEEEecCCcHHHHHHHHhcc
Confidence 5444 5788999999999999999999997532 3344 455566666553
No 9
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.29 E-value=0.004 Score=42.37 Aligned_cols=40 Identities=20% Similarity=0.297 Sum_probs=32.9
Q ss_pred eEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHH
Q psy4713 5 KLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHW 47 (103)
Q Consensus 5 klIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~y 47 (103)
..+|+|+|-.||||.-++..|++.++ +.+++..+-+.++.
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~---~~~i~~d~~~~~~~ 51 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYG---FTHLSTGELLREEL 51 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHT---CEEEEHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC---CeEEcHHHHHHHHH
Confidence 35788999999999999999999986 66777766666655
No 10
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.20 E-value=0.011 Score=39.48 Aligned_cols=45 Identities=13% Similarity=0.302 Sum_probs=32.9
Q ss_pred EEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHHHcCccHHHh
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQNGLEMDKL 58 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~~~glDl~~L 58 (103)
+|+|+|-.||||--++..|++.++ +.++.....+++. .|..+.++
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg---~~~id~d~~~~~~----~g~~~~~~ 48 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALG---YEFVDTDIFMQHT----SGMTVADV 48 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHT---CEEEEHHHHHHHH----HCSCHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC---CcEEcccHHHHHH----hCCCHHHH
Confidence 688999999999999999999986 4566655444332 45555444
No 11
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.19 E-value=0.013 Score=39.32 Aligned_cols=39 Identities=13% Similarity=0.201 Sum_probs=32.0
Q ss_pred EEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHH
Q psy4713 6 LILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHW 47 (103)
Q Consensus 6 lIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~y 47 (103)
.+|+|+|-.||||--++..|++.++ ..+++..+-+.++.
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~l~---~~~i~~d~~~~~~~ 45 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRDFG---WVHLSAGDLLRQEQ 45 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHC---CEEEEHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC---CeEeeHHHHHHHHH
Confidence 5789999999999999999999986 56677666666554
No 12
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.17 E-value=0.007 Score=41.09 Aligned_cols=42 Identities=14% Similarity=0.104 Sum_probs=29.6
Q ss_pred CCCCeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHH
Q psy4713 1 MTQPKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKS 45 (103)
Q Consensus 1 ~~~pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~ 45 (103)
|.++.-+|+++|-+||||--++..|++.++ +.+++....+++
T Consensus 1 m~~~~~~i~l~G~~GsGKst~a~~La~~l~---~~~i~~d~~~~~ 42 (185)
T 3trf_A 1 MKKNLTNIYLIGLMGAGKTSVGSQLAKLTK---RILYDSDKEIEK 42 (185)
T ss_dssp ----CCEEEEECSTTSSHHHHHHHHHHHHC---CCEEEHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHhC---CCEEEChHHHHH
Confidence 554445677899999999999999999986 556665554443
No 13
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.02 E-value=0.0052 Score=42.31 Aligned_cols=29 Identities=17% Similarity=0.357 Sum_probs=25.4
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhccc
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIGSQ 32 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~~~ 32 (103)
+..+|+|+|-.||||.-++..|++.++..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~ 36 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEALCAA 36 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 34678999999999999999999998753
No 14
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.92 E-value=0.014 Score=42.63 Aligned_cols=43 Identities=16% Similarity=0.126 Sum_probs=35.6
Q ss_pred CCeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHH
Q psy4713 3 QPKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWA 48 (103)
Q Consensus 3 ~pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA 48 (103)
++..+|+|+|-.||||.-++..|.+.++ +.+++.++-+++..+
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~g---~~~is~~~~~r~~~~ 69 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSHC---YCHLSTGDLLREAAE 69 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHC---CEEEEHHHHHHHHTT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhC---CeEEecHHHHHHHHh
Confidence 4567889999999999999999999884 677888887777543
No 15
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.91 E-value=0.017 Score=38.44 Aligned_cols=46 Identities=15% Similarity=0.270 Sum_probs=36.1
Q ss_pred EEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHHHcCccHHHhc
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQNGLEMDKLL 59 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~~~glDl~~LL 59 (103)
+|+|+|-.||||--++..|++.++ +.++...++.++.+ |..+.+++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~---~~~i~~d~~~~~~~----g~~~~~~~ 47 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN---IPFYDVDEEVQKRE----GLSIPQIF 47 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT---CCEEEHHHHHHHHH----TSCHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC---CCEEECcHHHHHHc----CCCHHHHH
Confidence 689999999999999999999986 56777777765543 55665554
No 16
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.85 E-value=0.0088 Score=41.78 Aligned_cols=53 Identities=19% Similarity=0.285 Sum_probs=39.4
Q ss_pred EEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHHH--cCccHHHhcCCC
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQ--NGLEMDKLLGAT 62 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~~--~glDl~~LL~d~ 62 (103)
.|+|+|-.||||.-++..|++.++ +.+++.++-+++..+.. .|..+.+++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~---~~~i~~d~~~r~~~~~~~~~~~~~~~~~~~g 56 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYG---IPHISTGDMFRAAMKEETPLGLEAKSYIDKG 56 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS---CCEEEHHHHHHHHHHTTCHHHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC---CcEEeHHHHHHHHHhcCCHHHHHHHHHHHCC
Confidence 578899999999999999999874 67888888888765542 233444555444
No 17
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.78 E-value=0.0068 Score=46.13 Aligned_cols=39 Identities=13% Similarity=0.158 Sum_probs=29.4
Q ss_pred CCCCeEEEEEecCcCCchhHHHHHHHHHhcc--cceEEEec
Q psy4713 1 MTQPKLILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRL 39 (103)
Q Consensus 1 ~~~pklIiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~i 39 (103)
|.+++.||.|||-+||||--++..|++.++. .++.++..
T Consensus 1 Ms~~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~ 41 (290)
T 1a7j_A 1 MSKKHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEG 41 (290)
T ss_dssp -CTTSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEG
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeec
Confidence 7778889999999999999999999999874 34666663
No 18
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.77 E-value=0.0086 Score=41.51 Aligned_cols=40 Identities=20% Similarity=0.293 Sum_probs=32.4
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHH
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSH 46 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~ 46 (103)
...+|+|+|-.||||--++..|++.++ ..+++..+-+++.
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l~---~~~i~~d~~~r~~ 58 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKLG---IPQISTGELFRRN 58 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHHT---CCEEEHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC---CcEEehhHHHHHH
Confidence 446889999999999999999999986 4567776666553
No 19
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.76 E-value=0.017 Score=39.22 Aligned_cols=34 Identities=24% Similarity=0.286 Sum_probs=26.7
Q ss_pred EEEEEecCcCCchhHHHHHHHHHhcccceEEEecchh
Q psy4713 6 LILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAP 42 (103)
Q Consensus 6 lIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~p 42 (103)
.+|+|+|-+||||..++..|.+.++ +..++..+-
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~~~~---~~~~~~d~~ 45 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELASKSG---LKYINVGDL 45 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHC---CEEEEHHHH
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHhC---CeEEEHHHH
Confidence 3567999999999999999999985 445555443
No 20
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.74 E-value=0.0081 Score=44.65 Aligned_cols=58 Identities=16% Similarity=0.284 Sum_probs=38.4
Q ss_pred CCCCeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHHH--cCccHHHhcCCC
Q psy4713 1 MTQPKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQ--NGLEMDKLLGAT 62 (103)
Q Consensus 1 ~~~pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~~--~glDl~~LL~d~ 62 (103)
|.+||+|+ |.|..||||.=.|..|++.++ ..-||..+-++.+-+.. .|..+...+..+
T Consensus 26 ~~k~kiI~-llGpPGsGKgTqa~~L~~~~g---~~hIstGdllR~~i~~~t~lg~~~~~~~~~G 85 (217)
T 3umf_A 26 LAKAKVIF-VLGGPGSGKGTQCEKLVQKFH---FNHLSSGDLLRAEVQSGSPKGKELKAMMERG 85 (217)
T ss_dssp TTSCEEEE-EECCTTCCHHHHHHHHHHHHC---CEEECHHHHHHHHHTTCCHHHHHHHHHHHHT
T ss_pred ccCCcEEE-EECCCCCCHHHHHHHHHHHHC---CceEcHHHHHHHHHHcCCchHHHHHHHHhcC
Confidence 45677554 569999999999999999985 55566666666654432 233444444443
No 21
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.73 E-value=0.022 Score=38.26 Aligned_cols=46 Identities=22% Similarity=0.256 Sum_probs=36.4
Q ss_pred EEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHHHcCccHHHhc
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQNGLEMDKLL 59 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~~~glDl~~LL 59 (103)
+|+|+|-.||||--++..|++.++ +.++....++.+.+ |..+.+++
T Consensus 9 ~i~l~G~~GsGKSTva~~La~~lg---~~~id~D~~~~~~~----g~~~~~~~ 54 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLAQELGLALK---LEVLDTDMIISERV----GLSVREIF 54 (168)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHT---CCEEEHHHHHHHHH----TSCHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC---CCEEEChHHHHHHh----CCCHHHHH
Confidence 789999999999999999999986 56777777766543 65665554
No 22
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.69 E-value=0.02 Score=38.35 Aligned_cols=42 Identities=19% Similarity=0.146 Sum_probs=32.9
Q ss_pred EEEEEecCcCCchhHHHHHHHHHhccc--ceEEEecchhhHHHH
Q psy4713 6 LILLFSGKRKSGKDFLTDYLLERIGSQ--HCAIIRLSAPIKSHW 47 (103)
Q Consensus 6 lIiL~sGKrksGKDy~a~~l~~~l~~~--~~~iv~iS~piK~~y 47 (103)
.+|+|+|-.||||.-++..|++.++.. .+..+..++++.+..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~~~~~~ 45 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATA 45 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECChHHHHHH
Confidence 378999999999999999999999752 355666667765544
No 23
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=95.68 E-value=0.061 Score=34.96 Aligned_cols=25 Identities=24% Similarity=0.272 Sum_probs=22.0
Q ss_pred EEEEecCcCCchhHHHHHHHHHhcc
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIGS 31 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~~ 31 (103)
.++|+|.+|+||-.++..+...+..
T Consensus 45 ~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 45 NPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHh
Confidence 4689999999999999999998843
No 24
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.66 E-value=0.016 Score=40.29 Aligned_cols=40 Identities=13% Similarity=0.201 Sum_probs=33.3
Q ss_pred EEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHH
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAK 49 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~ 49 (103)
+|+|+|-.||||.-++..|++.++ +.+++.++-+++....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~---~~~i~~d~~~r~~~~~ 41 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYE---IPHISTGDMFRAAIKN 41 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC---CCEEEHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC---CcEeeHHHHHHHHHhc
Confidence 578899999999999999999885 6678888877776543
No 25
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.56 E-value=0.013 Score=39.41 Aligned_cols=25 Identities=16% Similarity=0.324 Sum_probs=23.0
Q ss_pred EEEEEecCcCCchhHHHHHHHHHhc
Q psy4713 6 LILLFSGKRKSGKDFLTDYLLERIG 30 (103)
Q Consensus 6 lIiL~sGKrksGKDy~a~~l~~~l~ 30 (103)
.+|+|+|-+||||.-++..|+++++
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4678999999999999999999986
No 26
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.51 E-value=0.02 Score=38.94 Aligned_cols=37 Identities=24% Similarity=0.377 Sum_probs=27.9
Q ss_pred CCCCeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecch
Q psy4713 1 MTQPKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSA 41 (103)
Q Consensus 1 ~~~pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~ 41 (103)
|.++..+|.|+|..||||--++..|++. | +.++...+
T Consensus 4 ~~~~~~~I~i~G~~GsGKST~~~~La~~-g---~~~id~d~ 40 (203)
T 1uf9_A 4 EAKHPIIIGITGNIGSGKSTVAALLRSW-G---YPVLDLDA 40 (203)
T ss_dssp --CCCEEEEEEECTTSCHHHHHHHHHHT-T---CCEEEHHH
T ss_pred cccCceEEEEECCCCCCHHHHHHHHHHC-C---CEEEcccH
Confidence 3455678999999999999999999997 4 44555433
No 27
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=95.47 E-value=0.045 Score=35.87 Aligned_cols=25 Identities=20% Similarity=0.194 Sum_probs=22.1
Q ss_pred EEEEecCcCCchhHHHHHHHHHhcc
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIGS 31 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~~ 31 (103)
-+||+|.+|+||-.++..+...+..
T Consensus 45 ~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 45 NPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp EEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHh
Confidence 4589999999999999999998843
No 28
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.46 E-value=0.015 Score=39.26 Aligned_cols=44 Identities=18% Similarity=0.343 Sum_probs=32.5
Q ss_pred CCCCeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHH
Q psy4713 1 MTQPKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAK 49 (103)
Q Consensus 1 ~~~pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~ 49 (103)
|..| .+|+|+|-+||||--++..|.+.++ ..+++. +.+.+....
T Consensus 2 ~~~~-~~I~l~G~~GsGKST~~~~L~~~l~---~~~i~~-D~~~~~~~~ 45 (193)
T 2rhm_A 2 MQTP-ALIIVTGHPATGKTTLSQALATGLR---LPLLSK-DAFKEVMFD 45 (193)
T ss_dssp CSCC-EEEEEEESTTSSHHHHHHHHHHHHT---CCEEEH-HHHHHHHHH
T ss_pred CCCC-eEEEEECCCCCCHHHHHHHHHHHcC---CeEecH-HHHHHHHHH
Confidence 4444 5788999999999999999999986 334543 666655554
No 29
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.38 E-value=0.035 Score=37.14 Aligned_cols=40 Identities=15% Similarity=0.297 Sum_probs=31.5
Q ss_pred eEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHH
Q psy4713 5 KLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHW 47 (103)
Q Consensus 5 klIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~y 47 (103)
..+|+|+|-.||||--++..|++.++ ..+++..+-+....
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~---~~~i~~d~~~~~~~ 42 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYG---YTHLSAGELLRDER 42 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHC---CEEEEHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC---CeEEeHHHHHHHHH
Confidence 45788999999999999999999986 45666666555544
No 30
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.37 E-value=0.013 Score=40.80 Aligned_cols=30 Identities=23% Similarity=0.325 Sum_probs=24.9
Q ss_pred CCCCeEEEEEecCcCCchhHHHHHHHHHhc
Q psy4713 1 MTQPKLILLFSGKRKSGKDFLTDYLLERIG 30 (103)
Q Consensus 1 ~~~pklIiL~sGKrksGKDy~a~~l~~~l~ 30 (103)
|+....+|.|+|.+||||--++..|...++
T Consensus 1 mm~~~~~i~i~G~~GsGKSTl~~~L~~~~g 30 (227)
T 1cke_A 1 MTAIAPVITIDGPSGAGKGTLCKAMAEALQ 30 (227)
T ss_dssp --CCSCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 555456899999999999999999999886
No 31
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.36 E-value=0.035 Score=38.19 Aligned_cols=41 Identities=10% Similarity=0.162 Sum_probs=32.2
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHH
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHW 47 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~y 47 (103)
...+|+|+|-.||||--++..|.+.++ +.+++.++-+++++
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~g---~~~i~~d~~~~~~~ 54 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDYS---FVHLSAGDLLRAEQ 54 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHSS---CEEEEHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC---ceEEeHHHHHHHHH
Confidence 345889999999999999999999875 56677666555543
No 32
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.36 E-value=0.029 Score=40.94 Aligned_cols=55 Identities=18% Similarity=0.238 Sum_probs=40.6
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHHHcCccHHHhcCCCC
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQNGLEMDKLLGATK 63 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~~~glDl~~LL~d~~ 63 (103)
+..+|+|.|-.||||.-++..|.+.++. ...++....|......+ .+.+++.++.
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~~~p~~~~~g~----~i~~~~~~~~ 79 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMTREPGGVPTGE----EIRKIVLEGN 79 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEECTTTTCHHHH----HHHHHTTC--
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceeecCCCCCchHH----HHHHHHhCCC
Confidence 4567889999999999999999999986 55666666676555544 5666666655
No 33
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=95.27 E-value=0.011 Score=42.42 Aligned_cols=48 Identities=15% Similarity=0.208 Sum_probs=32.6
Q ss_pred eEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHHHcCccHHH
Q psy4713 5 KLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQNGLEMDK 57 (103)
Q Consensus 5 klIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~~~glDl~~ 57 (103)
+.||.|+|..||||.-++..|+++|| ...+- +.+=++.|+.+|++.+.
T Consensus 6 ~~iI~i~g~~GsGk~ti~~~la~~lg---~~~~D--~~~~~~~a~~~g~~~~~ 53 (201)
T 3fdi_A 6 QIIIAIGREFGSGGHLVAKKLAEHYN---IPLYS--KELLDEVAKDGRYSKEV 53 (201)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHTT---CCEEC--HHHHHHTTCC-------
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHhC---cCEEC--HHHHHHHHHhcCCCHHH
Confidence 56999999999999999999999997 34443 44545567778887543
No 34
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.27 E-value=0.019 Score=40.41 Aligned_cols=42 Identities=19% Similarity=0.251 Sum_probs=33.7
Q ss_pred CCeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHH
Q psy4713 3 QPKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHW 47 (103)
Q Consensus 3 ~pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~y 47 (103)
.+..+|+|+|-.||||--++..|++.++ +.+++..+-+++..
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~l~---~~~i~~d~~~~~~~ 43 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQERFH---AAHLATGDMLRSQI 43 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHHC---CEEEEHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHcC---ceEEehhHHHHHHH
Confidence 3456789999999999999999999986 56777777776653
No 35
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.26 E-value=0.027 Score=40.25 Aligned_cols=39 Identities=10% Similarity=0.103 Sum_probs=32.0
Q ss_pred EEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHH
Q psy4713 6 LILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHW 47 (103)
Q Consensus 6 lIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~y 47 (103)
..|+|+|-.||||-.++..|++.++ +.+++..+-+.+..
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l~---~~~i~~d~li~~~~ 55 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNFC---VCHLATGDMLRAMV 55 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT---CEEEEHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC---CceecHHHHHHHHH
Confidence 5688999999999999999999986 56777766666543
No 36
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.25 E-value=0.013 Score=40.67 Aligned_cols=26 Identities=23% Similarity=0.272 Sum_probs=23.6
Q ss_pred eEEEEEecCcCCchhHHHHHHHHHhc
Q psy4713 5 KLILLFSGKRKSGKDFLTDYLLERIG 30 (103)
Q Consensus 5 klIiL~sGKrksGKDy~a~~l~~~l~ 30 (103)
..+|+|+|-+||||--++..|...++
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg 43 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACG 43 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34789999999999999999999986
No 37
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.18 E-value=0.014 Score=41.38 Aligned_cols=30 Identities=23% Similarity=0.411 Sum_probs=25.8
Q ss_pred CCCCeEEEEEecCcCCchhHHHHHHHHHhc
Q psy4713 1 MTQPKLILLFSGKRKSGKDFLTDYLLERIG 30 (103)
Q Consensus 1 ~~~pklIiL~sGKrksGKDy~a~~l~~~l~ 30 (103)
|+++.-+|+|+|.+||||.=++..|...+.
T Consensus 4 m~~~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 4 MTERGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp -CCCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred ccCCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 666777888999999999999999998874
No 38
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=95.18 E-value=0.022 Score=38.36 Aligned_cols=26 Identities=19% Similarity=0.296 Sum_probs=23.6
Q ss_pred eEEEEEecCcCCchhHHHHHHHHHhc
Q psy4713 5 KLILLFSGKRKSGKDFLTDYLLERIG 30 (103)
Q Consensus 5 klIiL~sGKrksGKDy~a~~l~~~l~ 30 (103)
.-+|+++|.+||||--++..|...+|
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~g 33 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQLH 33 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhhC
Confidence 36889999999999999999999886
No 39
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.17 E-value=0.027 Score=39.52 Aligned_cols=52 Identities=15% Similarity=0.335 Sum_probs=39.7
Q ss_pred EEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHH--HcCccHHHhcCC
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAK--QNGLEMDKLLGA 61 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~--~~glDl~~LL~d 61 (103)
.|+|+|-.||||--++..|++.++ ..+++.++-++++... ..|..+.+++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g---~~~i~~d~~~r~~~~~~~~~g~~i~~~~~~ 55 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYG---IPQISTGDMLRAAVKSGSELGKQAKDIMDA 55 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHC---CCEEEHHHHHHHHHHHTCTTTGGGHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC---CeEEeHHHHHHHHHHcCChHHHHHHHHHHC
Confidence 479999999999999999999985 6678888888776655 234455555543
No 40
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.16 E-value=0.033 Score=37.76 Aligned_cols=46 Identities=17% Similarity=0.354 Sum_probs=33.0
Q ss_pred EEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHHHcCccHHHhc
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQNGLEMDKLL 59 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~~~glDl~~LL 59 (103)
+|+|+|-.||||--++..|++.++ +.+++..+-+++. .|..+.+++
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg---~~~id~D~~~~~~----~g~~~~~~~ 49 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALG---VGLLDTDVAIEQR----TGRSIADIF 49 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHT---CCEEEHHHHHHHH----HSSCHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHcC---CCEEeCchHHHHH----cCCCHHHHH
Confidence 588999999999999999999986 4566654443332 355544443
No 41
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.12 E-value=0.02 Score=37.75 Aligned_cols=24 Identities=13% Similarity=0.211 Sum_probs=22.7
Q ss_pred EEEEecCcCCchhHHHHHHHHHhc
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIG 30 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~ 30 (103)
+|+|+|-+||||--++..|.++++
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 789999999999999999999986
No 42
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=94.92 E-value=0.044 Score=39.70 Aligned_cols=39 Identities=18% Similarity=0.313 Sum_probs=30.7
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhccc-------ceEEEecchh
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIGSQ-------HCAIIRLSAP 42 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~~~-------~~~iv~iS~p 42 (103)
...||.|+|-.||||-.++..|++.++-. .+.+++..+=
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~ 66 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSF 66 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCcc
Confidence 45789999999999999999999998742 3456665543
No 43
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=94.92 E-value=0.018 Score=43.34 Aligned_cols=52 Identities=15% Similarity=0.287 Sum_probs=35.4
Q ss_pred CCCCeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHH---HHcCccHH
Q psy4713 1 MTQPKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWA---KQNGLEMD 56 (103)
Q Consensus 1 ~~~pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA---~~~glDl~ 56 (103)
|++.+++|.|+|.+||||.-++..|.+.++ ...+. ++.+-+..+ ...|.|++
T Consensus 5 m~~~~~~i~i~G~~GsGKsTla~~la~~lg---~~~~d-~g~~~r~~~~~~~~~gi~~~ 59 (233)
T 3r20_A 5 MVSGSLVVAVDGPAGTGKSSVSRGLARALG---ARYLD-TGAMYRIATLAVLRAGADLT 59 (233)
T ss_dssp ----CCEEEEECCTTSSHHHHHHHHHHHHT---CEEEE-HHHHHHHHHHHHHHHTCCTT
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHhC---CCccc-CCcHHHHHHHHHHHcCCCch
Confidence 556678999999999999999999999986 33444 344444433 56777643
No 44
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=94.91 E-value=0.033 Score=40.43 Aligned_cols=28 Identities=29% Similarity=0.284 Sum_probs=25.2
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhcc
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIGS 31 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~~ 31 (103)
|.-.+||+|.+|+||-.+|..++..+..
T Consensus 46 ~~~~~ll~G~~GtGKt~la~~la~~~~~ 73 (311)
T 4fcw_A 46 PIGSFLFLGPTGVGKTELAKTLAATLFD 73 (311)
T ss_dssp CSEEEEEESCSSSSHHHHHHHHHHHHHS
T ss_pred CceEEEEECCCCcCHHHHHHHHHHHHcC
Confidence 5568999999999999999999999864
No 45
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=94.89 E-value=0.029 Score=44.29 Aligned_cols=56 Identities=27% Similarity=0.418 Sum_probs=46.4
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhcc--cceEEEecchhhHHHHHHHcCccHHHhc
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRLSAPIKSHWAKQNGLEMDKLL 59 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~iS~piK~~yA~~~glDl~~LL 59 (103)
+.-|++|+|+.+|||--++..+...+.. ..|..++..++....+|...|.|+++|+
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~ 119 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLL 119 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhhee
Confidence 3457899999999999999888766543 5788899988888889999999998875
No 46
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=94.88 E-value=0.035 Score=39.34 Aligned_cols=54 Identities=11% Similarity=0.167 Sum_probs=38.2
Q ss_pred EEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHHH--cCccHHHhcCCC
Q psy4713 6 LILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQ--NGLEMDKLLGAT 62 (103)
Q Consensus 6 lIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~~--~glDl~~LL~d~ 62 (103)
.+|+|+|-.||||--++..|++.++ ...++.++-+....... .|..+.+++.++
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~~l~---~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g 63 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITTHFE---LKHLSSGDLLRDNMLRGTEIGVLAKAFIDQG 63 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSS---SEEEEHHHHHHHHHHHTCHHHHHHHHHHTTT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC---CeEEechHHHHHhhhcCChHHHHHHHHHHcC
Confidence 5788999999999999999999885 56777777666654331 133444555443
No 47
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=94.87 E-value=0.066 Score=38.49 Aligned_cols=43 Identities=14% Similarity=0.281 Sum_probs=34.8
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHH
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAK 49 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~ 49 (103)
.+.+|.+||-.||||--++..|++.+| +.++...+-.++.+.+
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~lg---~~vid~D~~~~~~~~~ 53 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKYG---AHVVNVDRIGHEVLEE 53 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHC---CEEEEHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhcC---CEEEECcHHHHHHHHH
Confidence 578999999999999999999999875 7777765555555543
No 48
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=94.76 E-value=0.026 Score=39.75 Aligned_cols=54 Identities=20% Similarity=0.291 Sum_probs=37.8
Q ss_pred EEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHH--HcCccHHHhcCCC
Q psy4713 6 LILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAK--QNGLEMDKLLGAT 62 (103)
Q Consensus 6 lIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~--~~glDl~~LL~d~ 62 (103)
.+|+|+|-.||||.-++..|++.++ ...++.++-+.++... ..|.++.+++.++
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l~---~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g 61 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKYQ---LAHISAGDLLRAEIAAGSENGKRAKEFMEKG 61 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHHC---CEECCHHHHHHHHHHHTCHHHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC---CceecHHHHHHHHHHcCCchhHHHHHHHHcC
Confidence 4688999999999999999999986 4556666666654332 2344555555444
No 49
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=94.74 E-value=0.033 Score=38.04 Aligned_cols=24 Identities=25% Similarity=0.429 Sum_probs=23.0
Q ss_pred EEEEecCcCCchhHHHHHHHHHhc
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIG 30 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~ 30 (103)
+|.|+|..||||--++..|++.++
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 899999999999999999999986
No 50
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=94.71 E-value=0.025 Score=38.81 Aligned_cols=27 Identities=26% Similarity=0.463 Sum_probs=24.6
Q ss_pred eEEEEEecCcCCchhHHHHHHHHHhcc
Q psy4713 5 KLILLFSGKRKSGKDFLTDYLLERIGS 31 (103)
Q Consensus 5 klIiL~sGKrksGKDy~a~~l~~~l~~ 31 (103)
..+|+|+|-.||||--++..|++.++.
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~ 36 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKN 36 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 457899999999999999999999876
No 51
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=94.65 E-value=0.036 Score=40.68 Aligned_cols=30 Identities=17% Similarity=0.325 Sum_probs=24.1
Q ss_pred CCCCeEEEEEecCcCCchhHHHHHHHHHhcc
Q psy4713 1 MTQPKLILLFSGKRKSGKDFLTDYLLERIGS 31 (103)
Q Consensus 1 ~~~pklIiL~sGKrksGKDy~a~~l~~~l~~ 31 (103)
|..|. +|+|+|-.||||-.++..|.+.|..
T Consensus 1 M~~~~-lIvl~G~pGSGKSTla~~La~~L~~ 30 (260)
T 3a4m_A 1 MGDIM-LIILTGLPGVGKSTFSKNLAKILSK 30 (260)
T ss_dssp --CCE-EEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCCE-EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 55554 6889999999999999999998654
No 52
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.62 E-value=0.047 Score=37.26 Aligned_cols=29 Identities=17% Similarity=0.342 Sum_probs=25.5
Q ss_pred CCeEEEEEecCcCCchhHHHHHHHHHhcc
Q psy4713 3 QPKLILLFSGKRKSGKDFLTDYLLERIGS 31 (103)
Q Consensus 3 ~pklIiL~sGKrksGKDy~a~~l~~~l~~ 31 (103)
.+..+|+|+|..||||--++..|...++.
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 35578889999999999999999999875
No 53
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=94.55 E-value=0.036 Score=38.82 Aligned_cols=34 Identities=24% Similarity=0.425 Sum_probs=26.0
Q ss_pred CCCCeEEEEEecCcCCchhHHHHHHHHHhcccceEEEec
Q psy4713 1 MTQPKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRL 39 (103)
Q Consensus 1 ~~~pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~i 39 (103)
|.+| .+|.|+|-.||||--++..|.. +| +.++..
T Consensus 1 M~~~-~~I~i~G~~GSGKST~~~~L~~-lg---~~~id~ 34 (218)
T 1vht_A 1 MSLR-YIVALTGGIGSGKSTVANAFAD-LG---INVIDA 34 (218)
T ss_dssp -CCC-EEEEEECCTTSCHHHHHHHHHH-TT---CEEEEH
T ss_pred CCCc-eEEEEECCCCCCHHHHHHHHHH-cC---CEEEEc
Confidence 5544 7889999999999999999987 65 344443
No 54
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=94.52 E-value=0.021 Score=38.21 Aligned_cols=23 Identities=17% Similarity=0.144 Sum_probs=21.0
Q ss_pred EEEecCcCCchhHHHHHHHHHhc
Q psy4713 8 LLFSGKRKSGKDFLTDYLLERIG 30 (103)
Q Consensus 8 iL~sGKrksGKDy~a~~l~~~l~ 30 (103)
|||+|++|+||..+|..++....
T Consensus 27 vll~G~~GtGKt~lA~~i~~~~~ 49 (145)
T 3n70_A 27 VWLYGAPGTGRMTGARYLHQFGR 49 (145)
T ss_dssp EEEESSTTSSHHHHHHHHHHSST
T ss_pred EEEECCCCCCHHHHHHHHHHhCC
Confidence 78999999999999999998764
No 55
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=94.50 E-value=0.052 Score=39.62 Aligned_cols=54 Identities=26% Similarity=0.342 Sum_probs=37.7
Q ss_pred eEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHHHcCccHHHhcCCC
Q psy4713 5 KLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQNGLEMDKLLGAT 62 (103)
Q Consensus 5 klIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~~~glDl~~LL~d~ 62 (103)
-.+|+|.|-.||||.-+++.|.+.|......++....|--....+ -+.+++.++
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~~p~~~~~g~----~i~~~l~~~ 59 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTREPGGTPLAE----RIRELLLAP 59 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEESSCSSHHHH----HHHHHHHSC
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCHHHH----HHHHHHhcC
Confidence 467889999999999999999999987444555555664333322 445555544
No 56
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=94.50 E-value=0.037 Score=37.77 Aligned_cols=40 Identities=30% Similarity=0.434 Sum_probs=29.3
Q ss_pred CCCCeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhh
Q psy4713 1 MTQPKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPI 43 (103)
Q Consensus 1 ~~~pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~pi 43 (103)
|..+ .+|+|+|-.||||-=++..|++.++.. .++.++.|+
T Consensus 1 m~~~-~~I~l~G~~GsGKsT~~~~L~~~l~g~--~~~~~~~~~ 40 (204)
T 2v54_A 1 MSRG-ALIVFEGLDKSGKTTQCMNIMESIPAN--TIKYLNFPQ 40 (204)
T ss_dssp CCCC-CEEEEECCTTSSHHHHHHHHHHTSCGG--GEEEEESSC
T ss_pred CCCC-cEEEEEcCCCCCHHHHHHHHHHHHCCC--ceEEEecCC
Confidence 5544 567899999999999999999998322 234445554
No 57
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=94.50 E-value=0.024 Score=39.64 Aligned_cols=27 Identities=22% Similarity=0.213 Sum_probs=23.0
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhc
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIG 30 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~ 30 (103)
+..+|+|+|.+||||.-+++.|.+.+.
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 334677899999999999999999884
No 58
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=94.40 E-value=0.036 Score=37.51 Aligned_cols=36 Identities=22% Similarity=0.313 Sum_probs=27.6
Q ss_pred EEEEecCcCCchhHHHHHHHHHhcccceEEEecchh
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAP 42 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~p 42 (103)
+|+|+|-.||||.-+++.|.+.+......++....|
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~~~ 37 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKREP 37 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEESS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEeeCC
Confidence 689999999999999999999995433445544444
No 59
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=94.38 E-value=0.069 Score=36.80 Aligned_cols=38 Identities=16% Similarity=0.336 Sum_probs=30.0
Q ss_pred eEEEEEecCcCCchhHHHHHHHHH-hcccceEEEecchhhHH
Q psy4713 5 KLILLFSGKRKSGKDFLTDYLLER-IGSQHCAIIRLSAPIKS 45 (103)
Q Consensus 5 klIiL~sGKrksGKDy~a~~l~~~-l~~~~~~iv~iS~piK~ 45 (103)
..+|+++|-.||||--++..|++. ++ +.++...+-+.+
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~l~g---~~~id~d~~~~~ 48 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAELDG---FQHLEVGKLVKE 48 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHHSTT---EEEEEHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCC---CEEeeHHHHHHH
Confidence 457889999999999999999998 54 666666655444
No 60
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=94.26 E-value=0.033 Score=37.70 Aligned_cols=46 Identities=17% Similarity=0.251 Sum_probs=32.4
Q ss_pred EEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHHHcCccHHHhc
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQNGLEMDKLL 59 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~~~glDl~~LL 59 (103)
+|+|+|.+||||--++..|++.++ +..+....-+ .+..|.++..++
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~---~~~~d~d~~~----~~~~g~~~~~~~ 51 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD---LVFLDSDFLI----EQKFNQKVSEIF 51 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT---CEEEEHHHHH----HHHHTSCHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC---CCEEcccHHH----HHHcCCCHHHHH
Confidence 578899999999999999999986 4455533222 233566665544
No 61
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=94.16 E-value=0.043 Score=39.51 Aligned_cols=27 Identities=22% Similarity=0.282 Sum_probs=23.4
Q ss_pred EEEEEecCcCCchhHHHHHHHHHhccc
Q psy4713 6 LILLFSGKRKSGKDFLTDYLLERIGSQ 32 (103)
Q Consensus 6 lIiL~sGKrksGKDy~a~~l~~~l~~~ 32 (103)
.-|||+|++|+||-.++..+...+...
T Consensus 30 ~~vll~G~~GtGKt~la~~i~~~~~~~ 56 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIASRLHYLSSRW 56 (265)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHTSTTT
T ss_pred CCEEEECCCCCcHHHHHHHHHHhcCcc
Confidence 357899999999999999999987643
No 62
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=94.09 E-value=0.059 Score=36.33 Aligned_cols=39 Identities=15% Similarity=0.262 Sum_probs=29.2
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHH
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKS 45 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~ 45 (103)
+..+|+|+|-.||||--++..|++.++ ..+++..+-+.+
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~~l~---~~~i~~d~~~~~ 41 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQELG---FKKLSTGDILRD 41 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHHHT---CEEECHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC---CeEecHHHHHHH
Confidence 345788999999999999999999886 445554444433
No 63
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=94.09 E-value=0.053 Score=43.04 Aligned_cols=57 Identities=23% Similarity=0.341 Sum_probs=47.0
Q ss_pred EEEEEecCcCCchhHHHHHHHHHhcc--cceEEEecchhhHHHHHHHcCccHHHhcCCC
Q psy4713 6 LILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRLSAPIKSHWAKQNGLEMDKLLGAT 62 (103)
Q Consensus 6 lIiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~iS~piK~~yA~~~glDl~~LL~d~ 62 (103)
-+++|.|..+|||-.++..+...+.. ..|..++...+....|+...|+|+++|+-..
T Consensus 75 ~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~ 133 (366)
T 1xp8_A 75 RITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQ 133 (366)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEEC
T ss_pred cEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeec
Confidence 36777999999999999887766532 5788999999988999999999999876443
No 64
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=94.09 E-value=0.045 Score=39.09 Aligned_cols=54 Identities=17% Similarity=0.233 Sum_probs=37.2
Q ss_pred EEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHH--HcCccHHHhcCCCC
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAK--QNGLEMDKLLGATK 63 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~--~~glDl~~LL~d~~ 63 (103)
+|+|+|-.||||--++..|++.++ ..+++..+-+++.... ..|-.+.+++.++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg---~~~i~~dd~~r~~~~~~~~~g~~i~~~~~~g~ 57 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYS---LAHIESGGIFREHIGGGTELGKKAKEFIDRGD 57 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT---CEEEEHHHHHHHHTTTTCHHHHHHHHHHTTTC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC---CeEEchHHHHHHHHHcCCHHHHHHHHHHHcCC
Confidence 689999999999999999999986 4667775555554221 12334555555543
No 65
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=93.97 E-value=0.059 Score=42.19 Aligned_cols=57 Identities=21% Similarity=0.282 Sum_probs=46.5
Q ss_pred eEEEEEecCcCCchhHHHHHHHHHhcc--cceEEEecchhhHHHHHHHcCccHHHhcCC
Q psy4713 5 KLILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRLSAPIKSHWAKQNGLEMDKLLGA 61 (103)
Q Consensus 5 klIiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~iS~piK~~yA~~~glDl~~LL~d 61 (103)
--|++|.|..||||=-++..+...+.. ..|..++...+....+|+..|.|+++++-.
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~ 119 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVS 119 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEe
Confidence 347899999999999998888765533 578888988888888999999999887633
No 66
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=93.94 E-value=0.064 Score=36.86 Aligned_cols=35 Identities=17% Similarity=0.284 Sum_probs=26.9
Q ss_pred EEEEEecCcCCchhHHHHHHHHHhccc--ceEEEecc
Q psy4713 6 LILLFSGKRKSGKDFLTDYLLERIGSQ--HCAIIRLS 40 (103)
Q Consensus 6 lIiL~sGKrksGKDy~a~~l~~~l~~~--~~~iv~iS 40 (103)
..++|+|..|+||-+++..+...+... .+..+..+
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~ 91 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVP 91 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhH
Confidence 567899999999999999999988653 33344444
No 67
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=93.93 E-value=0.036 Score=40.23 Aligned_cols=23 Identities=26% Similarity=0.397 Sum_probs=20.4
Q ss_pred EEEecCcCCchhHHHHHHHHHhc
Q psy4713 8 LLFSGKRKSGKDFLTDYLLERIG 30 (103)
Q Consensus 8 iL~sGKrksGKDy~a~~l~~~l~ 30 (103)
|+|+|.+|||||=+.+.|.+.+.
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEECCCCCCHHHHHHHHHHhCC
Confidence 67899999999999999988763
No 68
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=93.86 E-value=0.067 Score=36.59 Aligned_cols=37 Identities=22% Similarity=0.230 Sum_probs=28.7
Q ss_pred eEEEEEecCcCCchhHHHHHHHHHhcc--cceEEEecch
Q psy4713 5 KLILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRLSA 41 (103)
Q Consensus 5 klIiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~iS~ 41 (103)
.-.++|+|.+|+||-.++..+...+.. ..+..+..++
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~ 90 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGI 90 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHH
Confidence 456889999999999999999998875 3445555544
No 69
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=93.83 E-value=0.051 Score=37.82 Aligned_cols=29 Identities=24% Similarity=0.218 Sum_probs=25.7
Q ss_pred CCCeEEEEEecCcCCchhHHHHHHHHHhc
Q psy4713 2 TQPKLILLFSGKRKSGKDFLTDYLLERIG 30 (103)
Q Consensus 2 ~~pklIiL~sGKrksGKDy~a~~l~~~l~ 30 (103)
..+.-+|.|+|.+||||--++..|...+.
T Consensus 22 ~~~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 22 DQKGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp TSCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35667899999999999999999999985
No 70
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=93.78 E-value=0.067 Score=40.09 Aligned_cols=28 Identities=29% Similarity=0.543 Sum_probs=24.7
Q ss_pred CCeEEEEEecCcCCchhHHHHHHHHHhc
Q psy4713 3 QPKLILLFSGKRKSGKDFLTDYLLERIG 30 (103)
Q Consensus 3 ~pklIiL~sGKrksGKDy~a~~l~~~l~ 30 (103)
++...+||.|.+|+||=+++..+++.++
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~l~ 61 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRKMG 61 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3456788899999999999999999986
No 71
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=93.68 E-value=0.041 Score=38.30 Aligned_cols=38 Identities=11% Similarity=0.238 Sum_probs=30.0
Q ss_pred eEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHH
Q psy4713 5 KLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKS 45 (103)
Q Consensus 5 klIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~ 45 (103)
+.+|.|+|..||||-.++..|.+.+| +.++....-++.
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~g---~~~~~~d~~~~~ 40 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASELS---MIYVDTGAMYRA 40 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTT---CEEEEHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC---CceecCChHHHH
Confidence 46889999999999999999999986 455665544443
No 72
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=93.67 E-value=0.099 Score=39.13 Aligned_cols=35 Identities=26% Similarity=0.285 Sum_probs=27.7
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchh
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAP 42 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~p 42 (103)
...+|.|+|-.||||..++..|+ .+| +.+++..+-
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La-~lg---~~~id~D~~ 108 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK-NLG---AYIIDSDHL 108 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH-HHT---CEEEEHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH-HCC---CcEEehhHH
Confidence 35789999999999999999999 454 556665443
No 73
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=93.66 E-value=0.066 Score=35.61 Aligned_cols=24 Identities=33% Similarity=0.340 Sum_probs=21.8
Q ss_pred EEEecCcCCchhHHHHHHHHHhcc
Q psy4713 8 LLFSGKRKSGKDFLTDYLLERIGS 31 (103)
Q Consensus 8 iL~sGKrksGKDy~a~~l~~~l~~ 31 (103)
++|+|.+|+||-.++..+.+.+..
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~~~~~ 64 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALARDLFG 64 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHG
T ss_pred EEEECCCCCCHHHHHHHHHHHHhc
Confidence 899999999999999999988743
No 74
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=93.65 E-value=0.046 Score=36.45 Aligned_cols=29 Identities=17% Similarity=0.324 Sum_probs=23.6
Q ss_pred CCCCeEEEEEecCcCCchhHHHHHHHHHhc
Q psy4713 1 MTQPKLILLFSGKRKSGKDFLTDYLLERIG 30 (103)
Q Consensus 1 ~~~pklIiL~sGKrksGKDy~a~~l~~~l~ 30 (103)
|.++ .+|+|+|.+||||--++..|...++
T Consensus 1 m~~~-~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 1 MAEK-RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp --CC-CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCCC-CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 4443 4688999999999999999999986
No 75
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=93.58 E-value=0.14 Score=37.30 Aligned_cols=53 Identities=21% Similarity=0.272 Sum_probs=38.5
Q ss_pred EEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHHHc--CccHHHhcCCC
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQN--GLEMDKLLGAT 62 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~~~--glDl~~LL~d~ 62 (103)
||+|-|..||||.-.|..|++.++ ..-||..+-++++-+..+ |...+..+..|
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g---~~~istGdllR~~i~~~t~lg~~~~~~~~~G 56 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG---FVHISTGDILREAVQKGTPLGKKAKEYMERG 56 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC---CEEEEHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC---CeEEcHHHHHHHHHHhcChhhhhHHHHHhcC
Confidence 688889999999999999999985 566777777777665532 33444444433
No 76
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=93.57 E-value=0.093 Score=36.72 Aligned_cols=36 Identities=22% Similarity=0.367 Sum_probs=28.2
Q ss_pred CCeEEEEEecCcCCchhHHHHHHHHHhcc--cceEEEe
Q psy4713 3 QPKLILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIR 38 (103)
Q Consensus 3 ~pklIiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~ 38 (103)
.+..||.|+|.+||||--++..|...+.. ..+.+++
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~ 57 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFH 57 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEec
Confidence 35679999999999999999999998853 3344443
No 77
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=93.54 E-value=0.11 Score=42.82 Aligned_cols=40 Identities=13% Similarity=0.292 Sum_probs=31.2
Q ss_pred CCCeEEEEEecCcCCchhHHHHHHHHHhcc--cceEEEecch
Q psy4713 2 TQPKLILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRLSA 41 (103)
Q Consensus 2 ~~pklIiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~iS~ 41 (103)
+..+.+|++.|-.||||-+++..|+..++- ..+.+++..+
T Consensus 32 ~~~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~ 73 (520)
T 2axn_A 32 TNSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGE 73 (520)
T ss_dssp -CCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccH
Confidence 445678899999999999999999999864 3555666544
No 78
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=93.53 E-value=0.072 Score=37.64 Aligned_cols=53 Identities=19% Similarity=0.317 Sum_probs=37.7
Q ss_pred EEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHH--HcCccHHHhcCC
Q psy4713 6 LILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAK--QNGLEMDKLLGA 61 (103)
Q Consensus 6 lIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~--~~glDl~~LL~d 61 (103)
..|+|+|-.||||--++..|++.++ ..+++..+-+.+.... ..|..+.+++.+
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~---~~~i~~d~li~~~~~~~t~~g~~i~~~~~~ 60 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYG---LAHLSTGDMLREAIKNGTKIGLEAKSIIES 60 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHC---CEEEEHHHHHHHHHHTC--CCHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC---ceEEehhHHHHHHHHcCCHHHHHHHHHHHC
Confidence 4688899999999999999999985 6677776666554332 134445555543
No 79
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=93.47 E-value=0.098 Score=39.44 Aligned_cols=27 Identities=26% Similarity=0.380 Sum_probs=24.1
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhc
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIG 30 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~ 30 (103)
+..+|+|+|-+||||--++..|.+.+.
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~~ 58 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEETQ 58 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 457889999999999999999999874
No 80
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=93.45 E-value=0.065 Score=39.22 Aligned_cols=31 Identities=26% Similarity=0.301 Sum_probs=26.9
Q ss_pred CCCCeEEEEEecCcCCchhHHHHHHHHHhcc
Q psy4713 1 MTQPKLILLFSGKRKSGKDFLTDYLLERIGS 31 (103)
Q Consensus 1 ~~~pklIiL~sGKrksGKDy~a~~l~~~l~~ 31 (103)
|+++..+|.|+|.+||||-=++..|.++||-
T Consensus 23 m~~~g~~I~I~G~~GsGKSTl~k~La~~Lg~ 53 (252)
T 4e22_A 23 MTAIAPVITVDGPSGAGKGTLCKALAESLNW 53 (252)
T ss_dssp CTTTSCEEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 4456678999999999999999999999873
No 81
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=93.28 E-value=0.045 Score=36.72 Aligned_cols=26 Identities=27% Similarity=0.333 Sum_probs=19.6
Q ss_pred EEEEEecCcCCchhHHHHHHHHHhcc
Q psy4713 6 LILLFSGKRKSGKDFLTDYLLERIGS 31 (103)
Q Consensus 6 lIiL~sGKrksGKDy~a~~l~~~l~~ 31 (103)
.+|+|+|-.||||--++..|++.++.
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l~~ 31 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERLPG 31 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHSTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 47889999999999999999999873
No 82
>3rhf_A Putative polyphosphate kinase 2 family protein; PSI-biology, MCSG, structural genomics, midwest center for S genomics; HET: PGE FLC PG4; 2.45A {Arthrobacter aurescens}
Probab=93.14 E-value=0.13 Score=40.81 Aligned_cols=46 Identities=15% Similarity=0.303 Sum_probs=42.4
Q ss_pred CCeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHH
Q psy4713 3 QPKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWA 48 (103)
Q Consensus 3 ~pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA 48 (103)
..++||+|-|=-+||||=+.+.+.+.+....++|+.++.|+-+|-+
T Consensus 73 ~~~vlIvfEG~DaAGKgg~Ik~l~~~ldPRg~~V~a~~~Pt~eE~~ 118 (289)
T 3rhf_A 73 PKRLLLILQAMDTAGKGGIVSHVVGAMDPQGVQLTAFKAPTDEEKS 118 (289)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHHHSCGGGEEEEECCSCCHHHHT
T ss_pred CCcEEEEEECCCCCChHHHHHHHHHhcCcCceEEEECCCCChhhhc
Confidence 3689999999999999999999999999999999999999988744
No 83
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=93.11 E-value=0.075 Score=35.18 Aligned_cols=36 Identities=19% Similarity=0.116 Sum_probs=26.8
Q ss_pred EEEEEecCcCCchhHHHHHHHH-HhcccceEEEecchhhHH
Q psy4713 6 LILLFSGKRKSGKDFLTDYLLE-RIGSQHCAIIRLSAPIKS 45 (103)
Q Consensus 6 lIiL~sGKrksGKDy~a~~l~~-~l~~~~~~iv~iS~piK~ 45 (103)
.+|+|+|-+||||--++..|.+ .+ ...+++. +.+.+
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~~~---~~~~i~~-d~~r~ 39 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAKNP---GFYNINR-DDYRQ 39 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHST---TEEEECH-HHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHhhcC---CcEEecH-HHHHH
Confidence 5788999999999999999998 33 3455553 44443
No 84
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=93.04 E-value=0.12 Score=38.61 Aligned_cols=36 Identities=25% Similarity=0.442 Sum_probs=28.8
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchh
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAP 42 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~p 42 (103)
|.-.|||.|.+|+||-.++..++..++ +..+.++.+
T Consensus 48 ~~~~vLL~Gp~GtGKT~la~ala~~~~---~~~i~v~~~ 83 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLAKAIANECQ---ANFISIKGP 83 (301)
T ss_dssp CCSEEEEECSSSSSHHHHHHHHHHHTT---CEEEEECHH
T ss_pred CCceEEEECCCCcCHHHHHHHHHHHhC---CCEEEEEhH
Confidence 445689999999999999999999875 455666643
No 85
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=92.92 E-value=0.059 Score=37.00 Aligned_cols=25 Identities=20% Similarity=0.317 Sum_probs=23.3
Q ss_pred EEEEecCcCCchhHHHHHHHHHhcc
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIGS 31 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~~ 31 (103)
+|+|+|-+||||--+++.|.+.++.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 7899999999999999999999975
No 86
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=92.70 E-value=0.098 Score=34.93 Aligned_cols=25 Identities=32% Similarity=0.509 Sum_probs=22.7
Q ss_pred EEEEecCcCCchhHHHHHHHHHhcc
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIGS 31 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~~ 31 (103)
+++|+|.+|+||-.++..+.+.+..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~~~~ 71 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKGLNC 71 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcC
Confidence 7899999999999999999988754
No 87
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=92.65 E-value=0.1 Score=35.88 Aligned_cols=32 Identities=16% Similarity=0.293 Sum_probs=26.2
Q ss_pred EEEEecCcCCchhHHHHHHHHHhcccceEEEecchh
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAP 42 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~p 42 (103)
+|.|+|..||||--++..|+. +| +.++...+-
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g---~~~i~~d~~ 34 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LG---AYVLDADKL 34 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TT---CEEEEHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH-CC---CEEEEccHH
Confidence 789999999999999999999 74 556655443
No 88
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=92.60 E-value=0.16 Score=40.49 Aligned_cols=30 Identities=23% Similarity=0.375 Sum_probs=25.8
Q ss_pred EEEEEecCcCCchhHHHHHHHHHhcccceEEEe
Q psy4713 6 LILLFSGKRKSGKDFLTDYLLERIGSQHCAIIR 38 (103)
Q Consensus 6 lIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~ 38 (103)
.+|+|+|.++|||--++..|++.++ +.||+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~---~~iis 37 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN---GEIIS 37 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT---EEEEE
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC---Cceec
Confidence 5889999999999999999999986 44444
No 89
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=92.59 E-value=0.083 Score=36.62 Aligned_cols=36 Identities=28% Similarity=0.476 Sum_probs=27.7
Q ss_pred CCeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecc
Q psy4713 3 QPKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLS 40 (103)
Q Consensus 3 ~pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS 40 (103)
++..+|.|+|.+||||--+++.|...+. .+.++...
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~~~--~~~~i~~D 54 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKHLP--NCSVISQD 54 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTTST--TEEEEEGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhcC--CcEEEeCC
Confidence 3567899999999999999999998763 34444433
No 90
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=92.41 E-value=0.14 Score=37.13 Aligned_cols=27 Identities=26% Similarity=0.332 Sum_probs=23.8
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhc
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIG 30 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~ 30 (103)
|.--+||+|.+|+||-.++..+...++
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~~ 79 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATECS 79 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhC
Confidence 445789999999999999999999875
No 91
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=92.33 E-value=0.2 Score=34.71 Aligned_cols=48 Identities=17% Similarity=0.258 Sum_probs=34.3
Q ss_pred eEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHHHcCccHHHhc
Q psy4713 5 KLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQNGLEMDKLL 59 (103)
Q Consensus 5 klIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~~~glDl~~LL 59 (103)
.-+|+|+|-+||||--++..|+..++ ...+...+.+.+ ..|..+.+++
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l~---~~~i~~d~~~~~----~~g~~i~~~~ 72 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKLN---VPFIDLDWYIEE----RFHKTVGELF 72 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHT---CCEEEHHHHHHH----HHTSCHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcC---CCEEcchHHHHH----HhCCcHHHHH
Confidence 34778899999999999999999985 455666555443 2355555543
No 92
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=92.33 E-value=0.21 Score=36.88 Aligned_cols=38 Identities=18% Similarity=0.505 Sum_probs=31.1
Q ss_pred CCCCeEEEEEecCcCCchhHHHHHHHHHhcccceEEEec
Q psy4713 1 MTQPKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRL 39 (103)
Q Consensus 1 ~~~pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~i 39 (103)
|+++-.+|+|.|-.||||.-.++.|.+.++. .+.+++.
T Consensus 1 ~m~~g~~i~~eG~~g~GKst~~~~l~~~l~~-~~~~~~e 38 (216)
T 3tmk_A 1 MMGRGKLILIEGLDRTGKTTQCNILYKKLQP-NCKLLKF 38 (216)
T ss_dssp CCCCCCEEEEEECSSSSHHHHHHHHHHHHCS-SEEEEES
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhcc-cceEEEe
Confidence 5666678889999999999999999999986 4445553
No 93
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=92.25 E-value=0.18 Score=39.94 Aligned_cols=36 Identities=22% Similarity=0.396 Sum_probs=28.0
Q ss_pred CCCCeEEEEEecCcCCchhHHHHHHHHHhcccceEEEec
Q psy4713 1 MTQPKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRL 39 (103)
Q Consensus 1 ~~~pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~i 39 (103)
|++.+.+|+|+|.+||||--++..|++.++ +.+++.
T Consensus 1 ~~~m~~~i~i~GptGsGKTtla~~La~~l~---~~iis~ 36 (323)
T 3crm_A 1 MSSLPPAIFLMGPTAAGKTDLAMALADALP---CELISV 36 (323)
T ss_dssp --CCCEEEEEECCTTSCHHHHHHHHHHHSC---EEEEEE
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHcC---CcEEec
Confidence 555556889999999999999999999986 455554
No 94
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=92.15 E-value=0.15 Score=37.06 Aligned_cols=28 Identities=21% Similarity=0.350 Sum_probs=24.3
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhcc
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIGS 31 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~~ 31 (103)
+..-+||+|.+|+||-.++..+.+.+..
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l~~ 93 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLLHR 93 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4456899999999999999999988854
No 95
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=92.06 E-value=0.11 Score=35.35 Aligned_cols=26 Identities=23% Similarity=0.400 Sum_probs=23.1
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHh
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERI 29 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l 29 (103)
+.-+|.|+|.+||||.-++..|...+
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 34578899999999999999999887
No 96
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=92.02 E-value=0.16 Score=40.48 Aligned_cols=60 Identities=22% Similarity=0.251 Sum_probs=47.6
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhcc--cceEEEecchhhHHHHHHHcCccHHHhcCCCC
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRLSAPIKSHWAKQNGLEMDKLLGATK 63 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~iS~piK~~yA~~~glDl~~LL~d~~ 63 (103)
|--|++|.|..||||--++..+...+.. ..|..+...++....+|+..|+|+++++-..+
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~ 121 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQP 121 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhc
Confidence 4458999999999999999888877643 45666777777777899999999998765544
No 97
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=91.97 E-value=0.19 Score=36.50 Aligned_cols=27 Identities=15% Similarity=0.314 Sum_probs=24.3
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhc
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIG 30 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~ 30 (103)
+..+|+++|-+||||--++..|...++
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 346889999999999999999999986
No 98
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=91.86 E-value=0.43 Score=32.46 Aligned_cols=54 Identities=15% Similarity=0.298 Sum_probs=36.7
Q ss_pred EEEEEecCcCCchhHHHHHHHHHhcc--cceEEEecchhhHH--HHHHHcCccHHHhc
Q psy4713 6 LILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRLSAPIKS--HWAKQNGLEMDKLL 59 (103)
Q Consensus 6 lIiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~iS~piK~--~yA~~~glDl~~LL 59 (103)
-+++|.|.+||||--++..+...+.. ..+.+++...+..+ ......|.+++.+.
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEESRDSIIRQAKQFNWDFEEYI 81 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSCHHHHHHHHHHTTCCCGGGB
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccCHHHHHHHHHHhcchHHHHh
Confidence 47888999999999999888866533 45666665554332 22335677776653
No 99
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=91.85 E-value=0.15 Score=37.75 Aligned_cols=35 Identities=17% Similarity=0.124 Sum_probs=26.6
Q ss_pred EEEEEecCcCCchhHHHHHHHHHhcccceEEEecc
Q psy4713 6 LILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLS 40 (103)
Q Consensus 6 lIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS 40 (103)
..++|+|.+|+||-.++..+...+......++.++
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~ 72 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSS 72 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 45889999999999999999998854333444443
No 100
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=91.84 E-value=0.22 Score=35.10 Aligned_cols=26 Identities=19% Similarity=0.169 Sum_probs=23.0
Q ss_pred EEEEEecCcCCchhHHHHHHHHHhcc
Q psy4713 6 LILLFSGKRKSGKDFLTDYLLERIGS 31 (103)
Q Consensus 6 lIiL~sGKrksGKDy~a~~l~~~l~~ 31 (103)
.-|||+|.+|+||-+++..+...++.
T Consensus 40 ~~vll~G~~GtGKT~la~~la~~~~~ 65 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVATEAQV 65 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTC
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 45789999999999999999998863
No 101
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=91.84 E-value=0.23 Score=36.71 Aligned_cols=34 Identities=15% Similarity=0.190 Sum_probs=28.2
Q ss_pred EEEEecCcCCchhHHHHHHHHHhccc-ceEEEecc
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIGSQ-HCAIIRLS 40 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~~~-~~~iv~iS 40 (103)
.++|+|.+|+||-.++..+...+... ...++.++
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~ 80 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYIN 80 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEe
Confidence 78899999999999999999998654 45666665
No 102
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=91.81 E-value=0.24 Score=40.04 Aligned_cols=62 Identities=15% Similarity=0.226 Sum_probs=46.6
Q ss_pred EEEEecCcCCchhHHHHHHHHHhcc----cceEEEecchhhHHHHHHHcCccHHHhcCCCCc-HHHh
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIGS----QHCAIIRLSAPIKSHWAKQNGLEMDKLLGATKY-KEKY 68 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~~----~~~~iv~iS~piK~~yA~~~glDl~~LL~d~~Y-KE~~ 68 (103)
+++|.|..+|||--++-.+...... ..|.-|.--+++-..||+..|+|+++|+-..+. =|+-
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~ 96 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQL 96 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHH
Confidence 7899999999998887666555432 456667777777778999999999998766543 3443
No 103
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=91.70 E-value=0.16 Score=36.27 Aligned_cols=28 Identities=18% Similarity=0.366 Sum_probs=25.0
Q ss_pred CCeEEEEEecCcCCchhHHHHHHHHHhc
Q psy4713 3 QPKLILLFSGKRKSGKDFLTDYLLERIG 30 (103)
Q Consensus 3 ~pklIiL~sGKrksGKDy~a~~l~~~l~ 30 (103)
.+..+|.|+|..||||--++..|...+|
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~lg 41 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDFG 41 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHHC
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3556899999999999999999999886
No 104
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=91.68 E-value=0.15 Score=36.58 Aligned_cols=28 Identities=21% Similarity=0.261 Sum_probs=24.3
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhcc
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIGS 31 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~~ 31 (103)
+.-+|+|.|.+||||--++..|.+.+|-
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~ 53 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGL 53 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3457889999999999999999988874
No 105
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=91.67 E-value=0.15 Score=35.37 Aligned_cols=28 Identities=21% Similarity=0.316 Sum_probs=24.5
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhcc
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIGS 31 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~~ 31 (103)
+.-+|+|+|.+||||-=++..|...+|.
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~g~ 55 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADETGL 55 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhCC
Confidence 4567889999999999999999999863
No 106
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=91.61 E-value=0.16 Score=38.63 Aligned_cols=36 Identities=17% Similarity=0.228 Sum_probs=27.4
Q ss_pred eEEEEEecCcCCchhHHHHHHHHHhc-ccceEEEecc
Q psy4713 5 KLILLFSGKRKSGKDFLTDYLLERIG-SQHCAIIRLS 40 (103)
Q Consensus 5 klIiL~sGKrksGKDy~a~~l~~~l~-~~~~~iv~iS 40 (103)
.--|+|+|..|+||-+++..+...+. .....++-++
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~ 188 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLH 188 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 45678999999999999999999887 5334443333
No 107
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=91.55 E-value=0.21 Score=35.84 Aligned_cols=26 Identities=19% Similarity=0.195 Sum_probs=23.0
Q ss_pred EEEEEecCcCCchhHHHHHHHHHhcc
Q psy4713 6 LILLFSGKRKSGKDFLTDYLLERIGS 31 (103)
Q Consensus 6 lIiL~sGKrksGKDy~a~~l~~~l~~ 31 (103)
.-+||+|.+|+||-.++..+.+.++.
T Consensus 51 ~~vll~G~~GtGKT~la~~la~~l~~ 76 (310)
T 1ofh_A 51 KNILMIGPTGVGKTEIARRLAKLANA 76 (310)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 35789999999999999999999853
No 108
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=91.40 E-value=0.25 Score=33.42 Aligned_cols=27 Identities=19% Similarity=0.162 Sum_probs=23.6
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhc
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIG 30 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~ 30 (103)
+..+|.|+|-.||||--++..|...+.
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~ 30 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLV 30 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 445778999999999999999999883
No 109
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=91.39 E-value=0.28 Score=37.34 Aligned_cols=40 Identities=20% Similarity=0.330 Sum_probs=31.0
Q ss_pred CCeEEEEEecCcCCchhHHHHHHHHHhccc-----ceEEEecchh
Q psy4713 3 QPKLILLFSGKRKSGKDFLTDYLLERIGSQ-----HCAIIRLSAP 42 (103)
Q Consensus 3 ~pklIiL~sGKrksGKDy~a~~l~~~l~~~-----~~~iv~iS~p 42 (103)
++..||.|+|.+||||--++..|...+... .+.+|+.-+-
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f 73 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDF 73 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccc
Confidence 467899999999999999999999999752 3334366543
No 110
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=91.26 E-value=0.28 Score=36.79 Aligned_cols=35 Identities=20% Similarity=0.381 Sum_probs=27.6
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecch
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSA 41 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~ 41 (103)
|..-|||+|.+|+||-.++..+.+.++ +.++.++.
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~~~~---~~~~~v~~ 84 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVATEAN---STFFSVSS 84 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHHHHT---CEEEEEEH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHC---CCEEEEch
Confidence 445689999999999999999999875 44555544
No 111
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=91.24 E-value=0.35 Score=34.92 Aligned_cols=29 Identities=28% Similarity=0.375 Sum_probs=25.1
Q ss_pred CCeEEEEEecCcCCchhHHHHHHHHHhcc
Q psy4713 3 QPKLILLFSGKRKSGKDFLTDYLLERIGS 31 (103)
Q Consensus 3 ~pklIiL~sGKrksGKDy~a~~l~~~l~~ 31 (103)
.+..-+||+|.+|+||-.+|..++..++.
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~~~~ 90 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEESNF 90 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHHHTC
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHhCC
Confidence 35567899999999999999999998753
No 112
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=91.23 E-value=0.16 Score=34.88 Aligned_cols=26 Identities=15% Similarity=0.362 Sum_probs=22.6
Q ss_pred eEEEEEecCcCCchhHHHHHHHHHhc
Q psy4713 5 KLILLFSGKRKSGKDFLTDYLLERIG 30 (103)
Q Consensus 5 klIiL~sGKrksGKDy~a~~l~~~l~ 30 (103)
.-+++|+|.+||||.=+++.|...+.
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 34789999999999999999988764
No 113
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=91.22 E-value=0.4 Score=37.53 Aligned_cols=39 Identities=15% Similarity=0.208 Sum_probs=32.8
Q ss_pred CCeEEEEEecCcCCchhHHHHHHHHHhcc----cceEEEecch
Q psy4713 3 QPKLILLFSGKRKSGKDFLTDYLLERIGS----QHCAIIRLSA 41 (103)
Q Consensus 3 ~pklIiL~sGKrksGKDy~a~~l~~~l~~----~~~~iv~iS~ 41 (103)
.+.+||.|+|.+||||--++..|...+.. ..+.++++-+
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~ 132 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDG 132 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecc
Confidence 45689999999999999999999999863 4677888765
No 114
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=91.21 E-value=0.26 Score=37.40 Aligned_cols=27 Identities=22% Similarity=0.343 Sum_probs=23.5
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhc
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIG 30 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~ 30 (103)
|.--|||+|.+|+||-.++..++..+.
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~~~~ 70 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVATEAN 70 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTT
T ss_pred CCceEEEECCCCccHHHHHHHHHHHcC
Confidence 445678899999999999999999983
No 115
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=91.20 E-value=0.18 Score=36.96 Aligned_cols=37 Identities=22% Similarity=0.268 Sum_probs=29.2
Q ss_pred eEEEEEecCcCCchhHHHHHHHHHhccc------ceEEEecch
Q psy4713 5 KLILLFSGKRKSGKDFLTDYLLERIGSQ------HCAIIRLSA 41 (103)
Q Consensus 5 klIiL~sGKrksGKDy~a~~l~~~l~~~------~~~iv~iS~ 41 (103)
.-.++|+|.+|+||-.++..+.+.+... .+.++.++.
T Consensus 44 ~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~ 86 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNA 86 (387)
T ss_dssp CCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEET
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEEC
Confidence 3468899999999999999999988432 566666663
No 116
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=91.13 E-value=0.12 Score=38.99 Aligned_cols=26 Identities=19% Similarity=0.321 Sum_probs=22.4
Q ss_pred EEEEEecCcCCchhHHHHHHHHHhcc
Q psy4713 6 LILLFSGKRKSGKDFLTDYLLERIGS 31 (103)
Q Consensus 6 lIiL~sGKrksGKDy~a~~l~~~l~~ 31 (103)
.-|||+|++|+||..+|..++.....
T Consensus 26 ~~vLi~Ge~GtGKt~lAr~i~~~~~~ 51 (304)
T 1ojl_A 26 ATVLIHGDSGTGKELVARALHACSAR 51 (304)
T ss_dssp SCEEEESCTTSCHHHHHHHHHHHSSC
T ss_pred CcEEEECCCCchHHHHHHHHHHhCcc
Confidence 35789999999999999999997643
No 117
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=91.11 E-value=0.039 Score=36.89 Aligned_cols=23 Identities=13% Similarity=0.249 Sum_probs=20.5
Q ss_pred EEEecCcCCchhHHHHHHHHHhc
Q psy4713 8 LLFSGKRKSGKDFLTDYLLERIG 30 (103)
Q Consensus 8 iL~sGKrksGKDy~a~~l~~~l~ 30 (103)
|||+|++|+||-++|..+.....
T Consensus 30 vll~G~~GtGKt~lA~~i~~~~~ 52 (143)
T 3co5_A 30 VFLTGEAGSPFETVARYFHKNGT 52 (143)
T ss_dssp EEEEEETTCCHHHHHGGGCCTTS
T ss_pred EEEECCCCccHHHHHHHHHHhCC
Confidence 78899999999999999887754
No 118
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=91.10 E-value=0.26 Score=33.34 Aligned_cols=39 Identities=23% Similarity=0.120 Sum_probs=29.1
Q ss_pred eEEEEEecCcCCchhHHHHHHHHHhcc---cceEEEecchhh
Q psy4713 5 KLILLFSGKRKSGKDFLTDYLLERIGS---QHCAIIRLSAPI 43 (103)
Q Consensus 5 klIiL~sGKrksGKDy~a~~l~~~l~~---~~~~iv~iS~pi 43 (103)
.-+++|.|.+||||=.++..+...+.. ..+..+..++-+
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~ 79 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLI 79 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHH
Confidence 357889999999999999999988841 344555555443
No 119
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=91.09 E-value=0.22 Score=36.79 Aligned_cols=26 Identities=27% Similarity=0.362 Sum_probs=23.1
Q ss_pred EEEEEecCcCCchhHHHHHHHHHhcc
Q psy4713 6 LILLFSGKRKSGKDFLTDYLLERIGS 31 (103)
Q Consensus 6 lIiL~sGKrksGKDy~a~~l~~~l~~ 31 (103)
--|||+|.+|+||-.++..+...++.
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~~~~ 81 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYEMSA 81 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred CeEEEECcCCCCHHHHHHHHHHHhCC
Confidence 35799999999999999999998764
No 120
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=91.04 E-value=0.63 Score=31.68 Aligned_cols=55 Identities=20% Similarity=0.236 Sum_probs=37.0
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecch--hhHH--HHHHHcCccHHHhc
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSA--PIKS--HWAKQNGLEMDKLL 59 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~--piK~--~yA~~~glDl~~LL 59 (103)
+--+++|.|++||||=-++..+.. .....+..++... +..+ +.++..|+|.++++
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~-~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL-LSGKKVAYVDTEGGFSPERLVQMAETRGLNPEEAL 77 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH-HHCSEEEEEESSCCCCHHHHHHHHHTTTCCHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH-HcCCcEEEEECCCCCCHHHHHHHHHhcCCChHHHh
Confidence 345889999999999999998887 2234566666554 3332 33456677766643
No 121
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=90.99 E-value=0.47 Score=32.81 Aligned_cols=55 Identities=16% Similarity=0.143 Sum_probs=38.2
Q ss_pred eEEEEEecCcCCchhHHHHHHHHHhcc--cceEEEecchhhHHH--HHHHcCccHHHhc
Q psy4713 5 KLILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRLSAPIKSH--WAKQNGLEMDKLL 59 (103)
Q Consensus 5 klIiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~iS~piK~~--yA~~~glDl~~LL 59 (103)
.-+++|.|.+||||--++..+...+.. ..+..++...+..+- .+...|.+++++.
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~g~~~~~~~ 81 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEEHPVQVRQNMAQFGWDVKPYE 81 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSSCHHHHHHHHHTTTCCCHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccCCHHHHHHHHHHcCCCHHHHh
Confidence 347899999999999997766554432 467777777665432 3456788877653
No 122
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=90.97 E-value=0.23 Score=36.78 Aligned_cols=36 Identities=22% Similarity=0.426 Sum_probs=28.8
Q ss_pred EEEEEecCcCCchhHHHHHHHHHhccc--------ceEEEecch
Q psy4713 6 LILLFSGKRKSGKDFLTDYLLERIGSQ--------HCAIIRLSA 41 (103)
Q Consensus 6 lIiL~sGKrksGKDy~a~~l~~~l~~~--------~~~iv~iS~ 41 (103)
-.++|+|.+|+||-.++..+.+.+... .+.++.++.
T Consensus 46 ~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~ 89 (384)
T 2qby_B 46 FSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNC 89 (384)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEH
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEEC
Confidence 478999999999999999999987432 566666663
No 123
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=90.97 E-value=0.2 Score=36.62 Aligned_cols=37 Identities=11% Similarity=0.286 Sum_probs=29.1
Q ss_pred eEEEEEecCcCCchhHHHHHHHHHhccc---ceEEEecch
Q psy4713 5 KLILLFSGKRKSGKDFLTDYLLERIGSQ---HCAIIRLSA 41 (103)
Q Consensus 5 klIiL~sGKrksGKDy~a~~l~~~l~~~---~~~iv~iS~ 41 (103)
.-.++|+|.+|+||-.++..+...+... .+.++.++.
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~ 84 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINT 84 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEC
Confidence 3478899999999999999999887542 556666664
No 124
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=90.90 E-value=0.25 Score=36.45 Aligned_cols=39 Identities=23% Similarity=0.322 Sum_probs=29.9
Q ss_pred CCCCeEEEEEecCcCCchhHHHHHHHHHhcc--cceEEEec
Q psy4713 1 MTQPKLILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRL 39 (103)
Q Consensus 1 ~~~pklIiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~i 39 (103)
|.++++|.+.|+|-|+||=.+|-.|+..|.+ .++.+|-.
T Consensus 1 M~M~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~ 41 (286)
T 2xj4_A 1 MAETRVIVVGNEKGGAGKSTIAVHLVTALLYGGAKVAVIDL 41 (286)
T ss_dssp ---CEEEEECCSSSCTTHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCCCeEEEEEcCCCCCCHHHHHHHHHHHHHHCCCcEEEEEC
Confidence 6778899999999999999999999998865 35555543
No 125
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=90.51 E-value=0.47 Score=33.14 Aligned_cols=39 Identities=18% Similarity=0.338 Sum_probs=31.2
Q ss_pred CCeEEEEEecCcCCchhHHHHHHHHHhcc--cceEEEecch
Q psy4713 3 QPKLILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRLSA 41 (103)
Q Consensus 3 ~pklIiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~iS~ 41 (103)
++..+|.|.|.+||||--++..|...+.. ..+.+|++.+
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~ 60 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDG 60 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCC
Confidence 46679999999999999999999998863 2466666654
No 126
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=90.45 E-value=0.24 Score=34.09 Aligned_cols=24 Identities=25% Similarity=0.488 Sum_probs=21.8
Q ss_pred EEEEEecCcCCchhHHHHHHHHHhc
Q psy4713 6 LILLFSGKRKSGKDFLTDYLLERIG 30 (103)
Q Consensus 6 lIiL~sGKrksGKDy~a~~l~~~l~ 30 (103)
.||.++|..||||--++..|.. +|
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~-lg 26 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD-LG 26 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT-TT
T ss_pred cEEEEECCCCCCHHHHHHHHHH-CC
Confidence 6899999999999999999987 65
No 127
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=90.43 E-value=0.26 Score=33.21 Aligned_cols=27 Identities=37% Similarity=0.438 Sum_probs=23.2
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhc
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIG 30 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~ 30 (103)
+.-+|+++|.+||||--++..|...++
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~~~ 34 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANLPG 34 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhccC
Confidence 446788999999999999999988754
No 128
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=90.43 E-value=0.31 Score=37.32 Aligned_cols=34 Identities=21% Similarity=0.407 Sum_probs=26.7
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecc
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLS 40 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS 40 (103)
+..-|||+|.+|+||-.++..++..++ +.++.++
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~~~---~~~~~i~ 149 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQSG---ATFFSIS 149 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHHTT---CEEEEEE
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHcC---CeEEEEe
Confidence 345688999999999999999999875 3444444
No 129
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=90.42 E-value=0.22 Score=35.75 Aligned_cols=23 Identities=35% Similarity=0.349 Sum_probs=21.3
Q ss_pred EEEecCcCCchhHHHHHHHHHhc
Q psy4713 8 LLFSGKRKSGKDFLTDYLLERIG 30 (103)
Q Consensus 8 iL~sGKrksGKDy~a~~l~~~l~ 30 (103)
+||+|.+|+||-.++..+.+.+.
T Consensus 41 ~ll~G~~G~GKt~la~~l~~~l~ 63 (319)
T 2chq_A 41 LLFSGPPGTGKTATAIALARDLF 63 (319)
T ss_dssp EEEESSSSSSHHHHHHHHHHHHH
T ss_pred EEEECcCCcCHHHHHHHHHHHhc
Confidence 79999999999999999999873
No 130
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=90.38 E-value=0.12 Score=38.47 Aligned_cols=39 Identities=15% Similarity=0.313 Sum_probs=26.5
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhccc----ceEEEecchh
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIGSQ----HCAIIRLSAP 42 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~~~----~~~iv~iS~p 42 (103)
+..+|+|.|-.||||.=+++.|.+.|... ...|+....|
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~rep 66 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVTREP 66 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEEESS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeeecCC
Confidence 45678899999999999999999999653 3334444444
No 131
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=90.33 E-value=0.27 Score=33.10 Aligned_cols=25 Identities=16% Similarity=0.320 Sum_probs=23.2
Q ss_pred EEEEecCcCCchhHHHHHHHHHhcc
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIGS 31 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~~ 31 (103)
+|+|.|-.||||--++..|++.++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~ 26 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGY 26 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCC
T ss_pred EEEEECCCccCHHHHHHHHHHhcCC
Confidence 6899999999999999999999974
No 132
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=90.16 E-value=0.33 Score=34.61 Aligned_cols=24 Identities=21% Similarity=0.299 Sum_probs=21.9
Q ss_pred EEEEecCcCCchhHHHHHHHHHhc
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIG 30 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~ 30 (103)
-+||.|.+|+||-.++..+...++
T Consensus 47 ~vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECcCCCCHHHHHHHHHHHcC
Confidence 378999999999999999999875
No 133
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=90.09 E-value=0.4 Score=40.07 Aligned_cols=47 Identities=17% Similarity=0.253 Sum_probs=42.7
Q ss_pred CCeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHH
Q psy4713 3 QPKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAK 49 (103)
Q Consensus 3 ~pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~ 49 (103)
..+++|+|-|=-+||||=..+.|.+.|....+.|+.++.|+-++-+.
T Consensus 41 ~~~vlIvfEG~D~AGKg~~Ik~l~~~l~prg~~V~a~~~Pt~~E~~~ 87 (500)
T 3czp_A 41 RFPVIILINGIEGAGKGETVKLLNEWMDPRLIEVQSFLRPSDEELER 87 (500)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHSCGGGEEEEECSSCCHHHHTS
T ss_pred CCCEEEEEeCcCCCCHHHHHHHHHHhcCccCCeEEEeCCCChhhccC
Confidence 45789999999999999999999999999899999999999887553
No 134
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=90.06 E-value=0.33 Score=34.88 Aligned_cols=28 Identities=21% Similarity=0.350 Sum_probs=24.0
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhcc
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIGS 31 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~~ 31 (103)
+..-+||+|.+|+||-.++..+...++.
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la~~~~~ 77 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVATETNA 77 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHHHHTTC
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhCC
Confidence 4445899999999999999999999863
No 135
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=90.04 E-value=0.65 Score=35.50 Aligned_cols=59 Identities=19% Similarity=0.219 Sum_probs=43.1
Q ss_pred CeEEEEEecCcCCchhHH-HHHHHHHhcc-cceEEEecchhhHHH--HHHHcCccHHHhcCCC
Q psy4713 4 PKLILLFSGKRKSGKDFL-TDYLLERIGS-QHCAIIRLSAPIKSH--WAKQNGLEMDKLLGAT 62 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~-a~~l~~~l~~-~~~~iv~iS~piK~~--yA~~~glDl~~LL~d~ 62 (103)
+--++||+|-.++||--+ ...+.+.+.. ..|.++.+++|..+- -|+.+|+|+++++.++
T Consensus 20 ~gs~~li~g~p~~~~~~l~~qfl~~g~~~Ge~~~~~~~~e~~~~l~~~~~~~G~dl~~~~~~g 82 (260)
T 3bs4_A 20 HSLILIHEEDASSRGKDILFYILSRKLKSDNLVGMFSISYPLQLIIRILSRFGVDVIKYLENH 82 (260)
T ss_dssp TCEEEEEECSGGGCHHHHHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHTTCCHHHHHHTT
T ss_pred CCcEEEEEeCCCccHHHHHHHHHHHHHHCCCcEEEEEEeCCHHHHHHHHHHcCCCHHHHhhCC
Confidence 456788897777777655 4444555544 789999999998874 4567999999986543
No 136
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=89.97 E-value=0.55 Score=35.53 Aligned_cols=55 Identities=25% Similarity=0.349 Sum_probs=39.9
Q ss_pred eEEEEEecCcCCchhHHHHHHHHHhc--------ccceEEEecchhh--H--HHHHHHcCccHHHhc
Q psy4713 5 KLILLFSGKRKSGKDFLTDYLLERIG--------SQHCAIIRLSAPI--K--SHWAKQNGLEMDKLL 59 (103)
Q Consensus 5 klIiL~sGKrksGKDy~a~~l~~~l~--------~~~~~iv~iS~pi--K--~~yA~~~glDl~~LL 59 (103)
.-+++|.|.+||||--++..+..... ...|..++..++. . .++++..|.|.++++
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~ 173 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVM 173 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHH
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHh
Confidence 34889999999999998888876542 2456677776642 1 247888999997654
No 137
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=89.92 E-value=0.34 Score=37.25 Aligned_cols=36 Identities=19% Similarity=0.374 Sum_probs=27.5
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchh
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAP 42 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~p 42 (103)
|.--|||+|.+|+||-.+|..++..++ +.++.++.+
T Consensus 83 ~~~~iLL~GppGtGKT~la~ala~~~~---~~~~~v~~~ 118 (355)
T 2qp9_X 83 PTSGILLYGPPGTGKSYLAKAVATEAN---STFFSVSSS 118 (355)
T ss_dssp CCCCEEEECSTTSCHHHHHHHHHHHHT---CEEEEEEHH
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHhC---CCEEEeeHH
Confidence 334578899999999999999999985 445555443
No 138
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=89.85 E-value=0.22 Score=34.32 Aligned_cols=24 Identities=25% Similarity=0.344 Sum_probs=21.4
Q ss_pred EEEEecCcCCchhHHHHHHHHHhc
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIG 30 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~ 30 (103)
|+.|+|.+||||.=+.+.|...+.
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhCC
Confidence 578899999999999999998764
No 139
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=89.81 E-value=0.26 Score=35.83 Aligned_cols=25 Identities=28% Similarity=0.367 Sum_probs=22.9
Q ss_pred EEEEEecCcCCchhHHHHHHHHHhc
Q psy4713 6 LILLFSGKRKSGKDFLTDYLLERIG 30 (103)
Q Consensus 6 lIiL~sGKrksGKDy~a~~l~~~l~ 30 (103)
..+||+|.+|+||-.++..++..++
T Consensus 39 ~~vll~G~~GtGKT~la~~i~~~~~ 63 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLAHVIAHELG 63 (324)
T ss_dssp CCCEEECCTTCCCHHHHHHHHHHHT
T ss_pred CcEEEECCCCCCHHHHHHHHHHHhC
Confidence 4688999999999999999999886
No 140
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=89.79 E-value=0.33 Score=33.41 Aligned_cols=34 Identities=24% Similarity=0.420 Sum_probs=27.2
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhcccceEEEe
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIR 38 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~ 38 (103)
+..+|.++|.+||||--++..|...++. .+.++.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~~-~i~~v~ 38 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLGE-RVALLP 38 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHGG-GEEEEE
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhCC-CeEEEe
Confidence 4568999999999999999999998763 344443
No 141
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=89.73 E-value=0.35 Score=36.70 Aligned_cols=28 Identities=29% Similarity=0.367 Sum_probs=24.5
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhcc
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIGS 31 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~~ 31 (103)
|..-|||.|.+|+||-++|..+++.++.
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~~~ 77 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLLDV 77 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCC
Confidence 4556899999999999999999999853
No 142
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=89.68 E-value=0.27 Score=40.41 Aligned_cols=27 Identities=22% Similarity=0.396 Sum_probs=24.9
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhc
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIG 30 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~ 30 (103)
|+.+|+|+|.++|||--++..|++.++
T Consensus 1 ~~~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 1 SKKVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred CCcEEEEECcchhhHHHHHHHHHHHCC
Confidence 567889999999999999999999986
No 143
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=89.64 E-value=0.35 Score=33.81 Aligned_cols=27 Identities=26% Similarity=0.283 Sum_probs=23.8
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhc
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIG 30 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~ 30 (103)
+..+|+|+|-.||||.-++..|...++
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 345778899999999999999999987
No 144
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=89.59 E-value=0.28 Score=35.22 Aligned_cols=33 Identities=18% Similarity=0.244 Sum_probs=25.3
Q ss_pred EEEecCcCCchhHHHHHHHHHhcc--cceEEEecc
Q psy4713 8 LLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRLS 40 (103)
Q Consensus 8 iL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~iS 40 (103)
+||+|.+|+||..++..+.+.+.. ....++.++
T Consensus 45 ~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~ 79 (323)
T 1sxj_B 45 MIISGMPGIGKTTSVHCLAHELLGRSYADGVLELN 79 (323)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEEC
T ss_pred EEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEec
Confidence 899999999999999999998743 223344444
No 145
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=89.53 E-value=0.16 Score=36.27 Aligned_cols=24 Identities=21% Similarity=0.335 Sum_probs=22.0
Q ss_pred EEEecCcCCchhHHHHHHHHHhcc
Q psy4713 8 LLFSGKRKSGKDFLTDYLLERIGS 31 (103)
Q Consensus 8 iL~sGKrksGKDy~a~~l~~~l~~ 31 (103)
+||+|.+|+||-+++..+...++.
T Consensus 47 vll~G~~GtGKT~la~~la~~~~~ 70 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAGEAHV 70 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHHHHTC
T ss_pred EEEECCCCCcHHHHHHHHHHHhCC
Confidence 789999999999999999998864
No 146
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=89.50 E-value=0.31 Score=36.00 Aligned_cols=25 Identities=32% Similarity=0.509 Sum_probs=22.7
Q ss_pred EEEEecCcCCchhHHHHHHHHHhcc
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIGS 31 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~~ 31 (103)
.+||+|.+|+||-.++..+.+.+..
T Consensus 40 ~~ll~G~~G~GKT~la~~la~~l~~ 64 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIARLLAKGLNC 64 (373)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 6899999999999999999998853
No 147
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=89.48 E-value=0.69 Score=34.82 Aligned_cols=39 Identities=15% Similarity=0.229 Sum_probs=31.5
Q ss_pred CCeEEEEEecCcCCchhHHHHHHHHHhc--c--cceEEEecch
Q psy4713 3 QPKLILLFSGKRKSGKDFLTDYLLERIG--S--QHCAIIRLSA 41 (103)
Q Consensus 3 ~pklIiL~sGKrksGKDy~a~~l~~~l~--~--~~~~iv~iS~ 41 (103)
.+..||.|+|.+||||--++..|...+. . ..+.+++..+
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~ 120 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDG 120 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCC
Confidence 4557999999999999999999999876 2 4577766654
No 148
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=89.38 E-value=0.39 Score=38.78 Aligned_cols=34 Identities=15% Similarity=0.208 Sum_probs=27.2
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecc
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLS 40 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS 40 (103)
+.-.+||+|.+|+||-.++..+++.++ +.++.++
T Consensus 76 ~~~~lLL~GppGtGKTtla~~la~~l~---~~~i~in 109 (516)
T 1sxj_A 76 VFRAAMLYGPPGIGKTTAAHLVAQELG---YDILEQN 109 (516)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHTT---CEEEEEC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC---CCEEEEe
Confidence 345789999999999999999999985 4444443
No 149
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=89.26 E-value=0.33 Score=35.64 Aligned_cols=30 Identities=23% Similarity=0.346 Sum_probs=25.3
Q ss_pred EEEEecCcCCchhHHHHHHHHHhcccceEEEec
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRL 39 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~i 39 (103)
+|+|+|.+||||--++..|++.++ +.+++.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~---~~~i~~ 32 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETG---WPVVAL 32 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHC---CCEEEC
T ss_pred EEEEECCCCcCHHHHHHHHHhcCC---CeEEec
Confidence 789999999999999999999986 344544
No 150
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=89.25 E-value=0.25 Score=39.07 Aligned_cols=69 Identities=16% Similarity=0.163 Sum_probs=41.3
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhh------HHHHHH--HcCccHHHhcCCCCcHHHhHHHHHHH
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPI------KSHWAK--QNGLEMDKLLGATKYKEKYRAEMITW 75 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~pi------K~~yA~--~~glDl~~LL~d~~YKE~~R~~mi~w 75 (103)
+..+|+++|-+||||--++..|.+.++ +.+|+. +.+ .+.-.. ..|.+ =+++.......+|..++..
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~~---~~~i~~-D~~~~~~~~~~~~~~~l~~g~~--vIiD~~~~~~~~r~~~~~~ 330 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSAG---YVHVNR-DTLGSWQRCVSSCQAALRQGKR--VVIDNTNPDVPSRARYIQC 330 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGGT---CEECCG-GGSCSHHHHHHHHHHHHHTTCC--EEEESCCCSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhcC---cEEEcc-chHHHHHHHHHHHHHHHhcCCc--EEEeCCCCCHHHHHHHHHH
Confidence 346778899999999999999998875 333432 222 111111 11221 2355566677777777665
Q ss_pred HHH
Q psy4713 76 SEA 78 (103)
Q Consensus 76 ge~ 78 (103)
..+
T Consensus 331 ~~~ 333 (416)
T 3zvl_A 331 AKD 333 (416)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 151
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=89.21 E-value=0.39 Score=32.73 Aligned_cols=26 Identities=15% Similarity=0.212 Sum_probs=22.6
Q ss_pred EEEEEecCcCCchhHHHHHHHHHhcc
Q psy4713 6 LILLFSGKRKSGKDFLTDYLLERIGS 31 (103)
Q Consensus 6 lIiL~sGKrksGKDy~a~~l~~~l~~ 31 (103)
-+++|.|.+||||-.++..+...+..
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~~~~~ 62 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVAQALE 62 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 36788999999999999999998844
No 152
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=89.18 E-value=0.41 Score=34.40 Aligned_cols=28 Identities=25% Similarity=0.450 Sum_probs=25.4
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhcc
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIGS 31 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~~ 31 (103)
+..||.|+|.+||||--++..|...+|.
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~lG~ 51 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELLGQ 51 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHHTG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhch
Confidence 5578999999999999999999998874
No 153
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=89.15 E-value=0.42 Score=35.52 Aligned_cols=26 Identities=19% Similarity=0.372 Sum_probs=23.7
Q ss_pred EEEEEecCcCCchhHHHHHHHHHhcc
Q psy4713 6 LILLFSGKRKSGKDFLTDYLLERIGS 31 (103)
Q Consensus 6 lIiL~sGKrksGKDy~a~~l~~~l~~ 31 (103)
-.+||+|.+|+||-.++..+...++.
T Consensus 71 ~~vLl~GppGtGKT~la~~la~~l~~ 96 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQALGP 96 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHCS
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 46899999999999999999999974
No 154
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=89.07 E-value=0.3 Score=39.10 Aligned_cols=35 Identities=17% Similarity=0.255 Sum_probs=26.3
Q ss_pred EEEecCcCCchhHHHHHHHHHhcc-------cceEEEecchh
Q psy4713 8 LLFSGKRKSGKDFLTDYLLERIGS-------QHCAIIRLSAP 42 (103)
Q Consensus 8 iL~sGKrksGKDy~a~~l~~~l~~-------~~~~iv~iS~p 42 (103)
+||.|.+|+||-.++..++..+.. ....++.++..
T Consensus 204 ~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~ 245 (468)
T 3pxg_A 204 PVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG 245 (468)
T ss_dssp EEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC---
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC
Confidence 588999999999999999999843 24566666654
No 155
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=89.06 E-value=0.41 Score=38.30 Aligned_cols=66 Identities=9% Similarity=0.106 Sum_probs=40.8
Q ss_pred EEEEEecCcCCchhHHHHHHHHHhcccceEEEec-------------chhhHHHHHH--HcC---ccHHHhcCCCCcHHH
Q psy4713 6 LILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRL-------------SAPIKSHWAK--QNG---LEMDKLLGATKYKEK 67 (103)
Q Consensus 6 lIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~i-------------S~piK~~yA~--~~g---lDl~~LL~d~~YKE~ 67 (103)
.+|+|+|.++|||--++..|++.++ +.||+. ..|...|-+. .|- +|+++-.+.+.|.|.
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~~---~~iis~Ds~QvYr~~~igTakp~~~E~~gvphhlid~~~~~e~~s~~~F~~~ 80 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRLN---GEVISGDSMQVYRGMDIGTAKITAEEMDGVPHHLIDIKDPSESFSVADFQDL 80 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTT---EEEEECCGGGGBTTCCTTTTCCCHHHHTTCCEESSSCBCTTSCCCHHHHHHH
T ss_pred cEEEEECCCcCCHHHHHHHHHHhCc---cceeecCcccceeeeeecCCCCCHHHHcCCCEEEeccCChhhhccHHHHHHH
Confidence 3678999999999999999999985 333321 2355554432 122 244455555566666
Q ss_pred hHHHHHH
Q psy4713 68 YRAEMIT 74 (103)
Q Consensus 68 ~R~~mi~ 74 (103)
-+..+-.
T Consensus 81 a~~~i~~ 87 (322)
T 3exa_A 81 ATPLITE 87 (322)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555544
No 156
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=88.94 E-value=0.32 Score=47.12 Aligned_cols=67 Identities=24% Similarity=0.331 Sum_probs=53.4
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhcc--cceEEEecchhhHHHHHHHcCccHHHhcC-CCCcHHHhHH
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRLSAPIKSHWAKQNGLEMDKLLG-ATKYKEKYRA 70 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~iS~piK~~yA~~~glDl~~LL~-d~~YKE~~R~ 70 (103)
+.-++||.|..||||..++-.+...-.+ ..|.-++++++.-+.||+.+|.|+++|.- +....|+.+.
T Consensus 1080 ~g~~vll~G~~GtGKT~la~~~~~ea~k~Ge~~~Fit~ee~~~~L~a~~~G~dl~~l~~~~pd~~e~~~~ 1149 (2050)
T 3cmu_A 1080 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALE 1149 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEccccHHHHHHHHcCCChhHheeecCcchHHHHH
Confidence 3457899999999999999887654433 78999999999999999999999998763 3345566654
No 157
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=88.80 E-value=0.23 Score=36.41 Aligned_cols=23 Identities=26% Similarity=0.313 Sum_probs=21.8
Q ss_pred EEEecCcCCchhHHHHHHHHHhc
Q psy4713 8 LLFSGKRKSGKDFLTDYLLERIG 30 (103)
Q Consensus 8 iL~sGKrksGKDy~a~~l~~~l~ 30 (103)
|||+|..|+||-.++..+.+.++
T Consensus 48 vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 48 VLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp EEEECCGGGCTTHHHHHHHHHSC
T ss_pred EEEECCCCccHHHHHHHHHHhCc
Confidence 89999999999999999999886
No 158
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=88.77 E-value=0.34 Score=34.89 Aligned_cols=24 Identities=29% Similarity=0.300 Sum_probs=21.9
Q ss_pred EEEecCcCCchhHHHHHHHHHhcc
Q psy4713 8 LLFSGKRKSGKDFLTDYLLERIGS 31 (103)
Q Consensus 8 iL~sGKrksGKDy~a~~l~~~l~~ 31 (103)
+||+|.+|+||-.++..+.+.+..
T Consensus 49 ~ll~G~~G~GKT~la~~l~~~l~~ 72 (327)
T 1iqp_A 49 LLFAGPPGVGKTTAALALARELFG 72 (327)
T ss_dssp EEEESCTTSSHHHHHHHHHHHHHG
T ss_pred EEEECcCCCCHHHHHHHHHHHhcC
Confidence 899999999999999999998743
No 159
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=88.72 E-value=0.62 Score=35.60 Aligned_cols=36 Identities=17% Similarity=0.179 Sum_probs=29.5
Q ss_pred CCeEEEEEecCcCCchhHHHHHHHHHhcc--cceEEEe
Q psy4713 3 QPKLILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIR 38 (103)
Q Consensus 3 ~pklIiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~ 38 (103)
.++.|+++|||-|+||-.+|-.++..+.+ .++.+|.
T Consensus 17 ~~~~i~v~sgkGGvGKTTva~~LA~~lA~~G~rVllvD 54 (329)
T 2woo_A 17 TSLKWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLIS 54 (329)
T ss_dssp TTCCEEEEECSSSSSHHHHHHHHHHHHHTSSSCEEEEE
T ss_pred CCCEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEE
Confidence 35788999999999999999999998876 4555554
No 160
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.71 E-value=0.48 Score=38.74 Aligned_cols=36 Identities=22% Similarity=0.403 Sum_probs=28.6
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchh
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAP 42 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~p 42 (103)
|+-=||+.|.+|+||=.+|..++..++ +.++++|.|
T Consensus 181 ~prGvLL~GPPGTGKTllAkAiA~e~~---~~f~~v~~s 216 (405)
T 4b4t_J 181 QPKGVILYGPPGTGKTLLARAVAHHTD---CKFIRVSGA 216 (405)
T ss_dssp CCCCEEEESCSSSSHHHHHHHHHHHHT---CEEEEEEGG
T ss_pred CCCceEEeCCCCCCHHHHHHHHHHhhC---CCceEEEhH
Confidence 344578999999999999999999975 556666654
No 161
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=88.61 E-value=0.53 Score=35.08 Aligned_cols=28 Identities=14% Similarity=0.299 Sum_probs=24.6
Q ss_pred eEEEEEecCcCCchhHHHHHHHHHhccc
Q psy4713 5 KLILLFSGKRKSGKDFLTDYLLERIGSQ 32 (103)
Q Consensus 5 klIiL~sGKrksGKDy~a~~l~~~l~~~ 32 (103)
..+|+|.|-.||||.-.+..|.+.+...
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~~ 54 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQQN 54 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 3577899999999999999999999763
No 162
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=88.55 E-value=0.5 Score=39.73 Aligned_cols=28 Identities=32% Similarity=0.312 Sum_probs=24.3
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhcc
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIGS 31 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~~ 31 (103)
|.-.+||.|.+|+||-.+|..++..+..
T Consensus 520 p~~~~Ll~Gp~GtGKT~lA~ala~~l~~ 547 (758)
T 3pxi_A 520 PIGSFIFLGPTGVGKTELARALAESIFG 547 (758)
T ss_dssp CSEEEEEESCTTSSHHHHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4446999999999999999999999843
No 163
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=88.45 E-value=0.7 Score=34.49 Aligned_cols=56 Identities=18% Similarity=0.279 Sum_probs=39.7
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHh---------------c---ccceEEEecchhh--H--HHHHHHcCccHHHhc
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERI---------------G---SQHCAIIRLSAPI--K--SHWAKQNGLEMDKLL 59 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l---------------~---~~~~~iv~iS~pi--K--~~yA~~~glDl~~LL 59 (103)
+.-|++|.|..||||--++..+.... | ...|..++..++. . .++++..|+|.++++
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~~g~~~~~~~ 174 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHAGIDGQTVL 174 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHHHTCCHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHHcCCCHHHHh
Confidence 44689999999999999888877542 1 1456667776652 1 237888999987654
No 164
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=88.38 E-value=0.48 Score=37.57 Aligned_cols=35 Identities=20% Similarity=0.333 Sum_probs=27.6
Q ss_pred EEEEEecCcCCchhHHHHHHHHHhcccceEEEecch
Q psy4713 6 LILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSA 41 (103)
Q Consensus 6 lIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~ 41 (103)
--+||+|.+|+||=.+|..++..++. .+..+.++.
T Consensus 64 ~~iLl~GppGtGKT~la~ala~~l~~-~~~~~~~~~ 98 (456)
T 2c9o_A 64 RAVLLAGPPGTGKTALALAIAQELGS-KVPFCPMVG 98 (456)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCT-TSCEEEEEG
T ss_pred CeEEEECCCcCCHHHHHHHHHHHhCC-CceEEEEeH
Confidence 34788999999999999999999974 245555554
No 165
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=88.34 E-value=1.5 Score=34.86 Aligned_cols=29 Identities=14% Similarity=0.300 Sum_probs=25.2
Q ss_pred CCeEEEEEecCcCCchhHHHHHHHHHhcc
Q psy4713 3 QPKLILLFSGKRKSGKDFLTDYLLERIGS 31 (103)
Q Consensus 3 ~pklIiL~sGKrksGKDy~a~~l~~~l~~ 31 (103)
+.+.+|++.|-.||||-.++..|+..++.
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~ 65 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLNF 65 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 35678999999999999999999998864
No 166
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=88.30 E-value=0.44 Score=40.87 Aligned_cols=36 Identities=31% Similarity=0.348 Sum_probs=27.5
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhcccceEEEec
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRL 39 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~i 39 (103)
|.-.+||+|.+|+||-.+|..++..+......+++|
T Consensus 587 p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i 622 (854)
T 1qvr_A 587 PIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRI 622 (854)
T ss_dssp CSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEE
Confidence 446899999999999999999999985433333333
No 167
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=88.27 E-value=0.39 Score=45.73 Aligned_cols=62 Identities=26% Similarity=0.407 Sum_probs=50.7
Q ss_pred EEEEEecCcCCchhHHHHHHHHHhcc--cceEEEecchhhHHHHHHHcCccHHHhcCC-CCcHHH
Q psy4713 6 LILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRLSAPIKSHWAKQNGLEMDKLLGA-TKYKEK 67 (103)
Q Consensus 6 lIiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~iS~piK~~yA~~~glDl~~LL~d-~~YKE~ 67 (103)
-++|+.|..+|||=.+|-.+...-.. ..+.-|++.+++-..|++..|.|+++|+.. ++..|+
T Consensus 1083 ~~~l~~G~~g~GKT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~ 1147 (1706)
T 3cmw_A 1083 RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQ 1147 (1706)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHH
T ss_pred CEEEEEcCCCCChHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHH
Confidence 37899999999999999887765433 578889999999999999999999999977 334443
No 168
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=88.20 E-value=0.59 Score=37.25 Aligned_cols=30 Identities=23% Similarity=0.269 Sum_probs=25.1
Q ss_pred EEEEEecCcCCchhHHHHHHHHHhcccceEEEe
Q psy4713 6 LILLFSGKRKSGKDFLTDYLLERIGSQHCAIIR 38 (103)
Q Consensus 6 lIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~ 38 (103)
.+|+|+|.++|||--++..|++.++ +.||+
T Consensus 11 ~~i~i~GptgsGKt~la~~La~~~~---~~iis 40 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRKILP---VELIS 40 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC---EEEEE
T ss_pred cEEEEECCCccCHHHHHHHHHHhCC---CcEEe
Confidence 4678999999999999999999985 44444
No 169
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=88.14 E-value=0.48 Score=35.97 Aligned_cols=28 Identities=25% Similarity=0.388 Sum_probs=24.4
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhcc
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIGS 31 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~~ 31 (103)
+..-|||+|.+|+||-.+|..+++.++.
T Consensus 71 ~~~~ill~Gp~GtGKT~la~~la~~l~~ 98 (376)
T 1um8_A 71 SKSNILLIGPTGSGKTLMAQTLAKHLDI 98 (376)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3456899999999999999999999863
No 170
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=88.07 E-value=0.42 Score=32.45 Aligned_cols=26 Identities=19% Similarity=0.312 Sum_probs=22.2
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHh
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERI 29 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l 29 (103)
+--|+.|+|.+||||-=++..|...+
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 34477889999999999999998875
No 171
>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}
Probab=88.00 E-value=0.57 Score=37.09 Aligned_cols=44 Identities=14% Similarity=0.353 Sum_probs=39.9
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHH
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHW 47 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~y 47 (103)
.+++|+|-|=-+|||+=..+.|.+.|....+.|+.++.|+-++-
T Consensus 85 ~~vlIvfEG~DgAGKgt~Ik~L~e~Ldprg~~V~~~~~Pt~eE~ 128 (304)
T 3czq_A 85 KRVMAVFEGRDAAGKGGAIHATTANMNPRSARVVALTKPTETER 128 (304)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTSCTTTEEEEECCSCCHHHH
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHhcccCCeEEEeCCcChHHH
Confidence 47899999999999999999999999988899999999995543
No 172
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=87.99 E-value=0.42 Score=34.65 Aligned_cols=23 Identities=26% Similarity=0.339 Sum_probs=19.1
Q ss_pred EEEEEecCcCCchhHHHHHHHHH
Q psy4713 6 LILLFSGKRKSGKDFLTDYLLER 28 (103)
Q Consensus 6 lIiL~sGKrksGKDy~a~~l~~~ 28 (103)
.|.||||..||||-+.+-.+...
T Consensus 6 mi~l~tG~pGsGKT~~a~~~~~~ 28 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVSMMAN 28 (199)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHH
Confidence 38999999999999998776433
No 173
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=87.89 E-value=0.5 Score=39.49 Aligned_cols=47 Identities=21% Similarity=0.399 Sum_probs=42.7
Q ss_pred CCeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHH
Q psy4713 3 QPKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAK 49 (103)
Q Consensus 3 ~pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~ 49 (103)
+.+++|+|-|=-+|||+=..+.|.+.|....+.|+.++.|+-++-+.
T Consensus 298 ~~~vlIvfEG~DaAGKg~~Ik~l~~~ldprg~~V~~~~~Pt~~E~~~ 344 (500)
T 3czp_A 298 QHSLVAVFEGNDAAGKGGAIRRVTDALDPRQYHIVPIAAPTEEERAQ 344 (500)
T ss_dssp GCEEEEEEEESTTSCHHHHHHHHHTTSCGGGCEEEECCSCCHHHHTS
T ss_pred CCCEEEEEeccCCCCHHHHHHHHHHhcCccCCeEEEeCCCChhhhcc
Confidence 35789999999999999999999999999899999999999887643
No 174
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=87.52 E-value=0.58 Score=37.22 Aligned_cols=27 Identities=22% Similarity=0.343 Sum_probs=23.4
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhc
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIG 30 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~ 30 (103)
|.--|||+|.+|+||-.++..++..+.
T Consensus 166 ~~~~vLL~GppGtGKT~lA~aia~~~~ 192 (444)
T 2zan_A 166 PWRGILLFGPPGTGKSYLAKAVATEAN 192 (444)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHCC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHcC
Confidence 445688999999999999999999983
No 175
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=87.51 E-value=0.45 Score=46.14 Aligned_cols=61 Identities=25% Similarity=0.361 Sum_probs=50.1
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhcc--cceEEEecchhhHHHHHHHcCccHHHhcCCCCc
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRLSAPIKSHWAKQNGLEMDKLLGATKY 64 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~iS~piK~~yA~~~glDl~~LL~d~~Y 64 (103)
+.-+++|+|..|+||=.+|-.+...... ..|..++..+++-..||+..|.|+++|+-..++
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~ 1488 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPD 1488 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCC
Confidence 4457899999999999999888665443 688999999988888899999999998754443
No 176
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=87.48 E-value=1.5 Score=30.12 Aligned_cols=59 Identities=12% Similarity=0.187 Sum_probs=40.5
Q ss_pred CeEEEEEecCcCCchhHHHHHHH-HHhc--ccceEEEecchhhHHH--HHHHcCccHHHhcCCC
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLL-ERIG--SQHCAIIRLSAPIKSH--WAKQNGLEMDKLLGAT 62 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~-~~l~--~~~~~iv~iS~piK~~--yA~~~glDl~~LL~d~ 62 (103)
|--+++|.|..|+||--++-.+. +... ...+..+++..+..+. .+...|.|++.++.++
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E~~~~~~~~~~~~~~~~~~~~~~~~ 92 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRREMASFGWDFEKYEKEG 92 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTT
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecccCCHHHHHHHHHHcCCChHHHHhcC
Confidence 34578999999999997765543 3222 2578888888776654 3556788887765543
No 177
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=87.42 E-value=0.55 Score=34.53 Aligned_cols=34 Identities=18% Similarity=0.246 Sum_probs=27.0
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecc
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLS 40 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS 40 (103)
+.-++|++|.+|+||-.++..+.+.++ ..++.++
T Consensus 47 ~~~~~L~~G~~G~GKT~la~~la~~l~---~~~~~i~ 80 (324)
T 3u61_B 47 IPHIILHSPSPGTGKTTVAKALCHDVN---ADMMFVN 80 (324)
T ss_dssp CCSEEEECSSTTSSHHHHHHHHHHHTT---EEEEEEE
T ss_pred CCeEEEeeCcCCCCHHHHHHHHHHHhC---CCEEEEc
Confidence 345789999999999999999999885 4444444
No 178
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=87.30 E-value=0.48 Score=34.71 Aligned_cols=26 Identities=19% Similarity=0.358 Sum_probs=21.9
Q ss_pred eEEEEEecCcCCchhHHHHHHHHHhc
Q psy4713 5 KLILLFSGKRKSGKDFLTDYLLERIG 30 (103)
Q Consensus 5 klIiL~sGKrksGKDy~a~~l~~~l~ 30 (103)
.-+|+|+|.+||||+=+.+.|...+.
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 34677899999999999999988753
No 179
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=87.19 E-value=1.2 Score=34.15 Aligned_cols=57 Identities=18% Similarity=0.177 Sum_probs=40.8
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhc--------ccceEEEecchhhH----HHHHHHcCccHHHhcC
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIG--------SQHCAIIRLSAPIK----SHWAKQNGLEMDKLLG 60 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~--------~~~~~iv~iS~piK----~~yA~~~glDl~~LL~ 60 (103)
+.-|++|.|.+||||=-++..+..... ...+..++..++.. .+++...|+|.++++.
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~ 189 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLD 189 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHh
Confidence 456889999999999999988877521 24566677666422 3478889999875543
No 180
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=87.10 E-value=0.51 Score=34.34 Aligned_cols=32 Identities=22% Similarity=0.124 Sum_probs=25.2
Q ss_pred EEEEEecCcCCchhHHHHHHHHHhcccceEEEec
Q psy4713 6 LILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRL 39 (103)
Q Consensus 6 lIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~i 39 (103)
.+|+|+|-+||||--++..|.+.+. .+.+++.
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~~--~~~~i~~ 34 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKNP--GFYNINR 34 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHST--TEEEECH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhCC--CcEEecc
Confidence 5788999999999999999998642 3445544
No 181
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=86.91 E-value=0.36 Score=35.86 Aligned_cols=29 Identities=24% Similarity=0.369 Sum_probs=25.6
Q ss_pred CCeEEEEEecCcCCchhHHHHHHHHHhcc
Q psy4713 3 QPKLILLFSGKRKSGKDFLTDYLLERIGS 31 (103)
Q Consensus 3 ~pklIiL~sGKrksGKDy~a~~l~~~l~~ 31 (103)
.+..+|+|.|-.||||--+++.|.+.|..
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 34567889999999999999999999875
No 182
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=86.83 E-value=0.82 Score=35.59 Aligned_cols=28 Identities=14% Similarity=0.170 Sum_probs=25.5
Q ss_pred CCeEEEEEecCcCCchhHHHHHHHHHhc
Q psy4713 3 QPKLILLFSGKRKSGKDFLTDYLLERIG 30 (103)
Q Consensus 3 ~pklIiL~sGKrksGKDy~a~~l~~~l~ 30 (103)
+++.|+++|||-|.||-.+|-.|+-.+.
T Consensus 16 ~~~~i~v~sgKGGvGKTTvaanLA~~lA 43 (354)
T 2woj_A 16 TTHKWIFVGGKGGVGKTTSSCSIAIQMA 43 (354)
T ss_dssp SSCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHH
Confidence 4578999999999999999999998887
No 183
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=86.82 E-value=0.69 Score=32.87 Aligned_cols=31 Identities=23% Similarity=0.288 Sum_probs=24.7
Q ss_pred EEEecCcCCchhHHHHHHHHHhcccceEEEecch
Q psy4713 8 LLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSA 41 (103)
Q Consensus 8 iL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~ 41 (103)
++|.|.+||||-.++..+...++ ...+.+++
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~~---~~~i~~~~ 82 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEAR---VPFITASG 82 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT---CCEEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhC---CCEEEeeH
Confidence 88999999999999999998875 33444443
No 184
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=86.73 E-value=0.54 Score=35.21 Aligned_cols=24 Identities=33% Similarity=0.315 Sum_probs=21.8
Q ss_pred EEEecCcCCchhHHHHHHHHHhcc
Q psy4713 8 LLFSGKRKSGKDFLTDYLLERIGS 31 (103)
Q Consensus 8 iL~sGKrksGKDy~a~~l~~~l~~ 31 (103)
+||+|.+|+||-.++..+...+..
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l~~ 72 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREIYG 72 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHcC
Confidence 789999999999999999998743
No 185
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=86.67 E-value=0.55 Score=44.74 Aligned_cols=67 Identities=24% Similarity=0.337 Sum_probs=53.6
Q ss_pred EEEEEecCcCCchhHHHHHHHHHhcc--cceEEEecchhhHHHHHHHcCccHHHhcCC-CCcHHHhHHHH
Q psy4713 6 LILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRLSAPIKSHWAKQNGLEMDKLLGA-TKYKEKYRAEM 72 (103)
Q Consensus 6 lIiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~iS~piK~~yA~~~glDl~~LL~d-~~YKE~~R~~m 72 (103)
-||+++|..+|||=.+|-.......+ ..|..+..-+++=..||+..|.|+++|+-. +..-|++=..+
T Consensus 1432 ~~iei~g~~~sGkttl~~~~~a~~~~~g~~~~~i~~e~~~~~~~~~~~Gv~~~~l~~~~p~~~e~~l~~~ 1501 (1706)
T 3cmw_A 1432 RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEIC 1501 (1706)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEecCCCCCHHHHHHcCCCHHHeEEeCCCcHHHHHHHH
Confidence 58999999999999999877754332 788889988888889999999999999865 44557664433
No 186
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.66 E-value=0.81 Score=37.33 Aligned_cols=36 Identities=25% Similarity=0.383 Sum_probs=28.5
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchh
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAP 42 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~p 42 (103)
|+-=||+.|..|+||=.+|..++..++ +.+++++.+
T Consensus 205 ~prGiLL~GPPGtGKT~lakAiA~~~~---~~~~~v~~~ 240 (428)
T 4b4t_K 205 PPRGVLLYGPPGTGKTMLVKAVANSTK---AAFIRVNGS 240 (428)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHHHT---CEEEEEEGG
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhC---CCeEEEecc
Confidence 344588999999999999999999985 555555544
No 187
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=86.50 E-value=1 Score=34.76 Aligned_cols=37 Identities=16% Similarity=0.223 Sum_probs=30.1
Q ss_pred CCeEEEEEecCcCCchhHHHHHHHHHhcc--cceEEEec
Q psy4713 3 QPKLILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRL 39 (103)
Q Consensus 3 ~pklIiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~i 39 (103)
.++.|+++|||-|+||=-+|-.++..+.+ .++.+|..
T Consensus 24 ~~~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~ 62 (349)
T 3ug7_A 24 DGTKYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVST 62 (349)
T ss_dssp CSCEEEEEECSSSTTHHHHHHHHHHHHHHSSCCEEEEEC
T ss_pred CCCEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 46889999999999999999999988865 45555553
No 188
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=86.45 E-value=1.1 Score=37.38 Aligned_cols=27 Identities=33% Similarity=0.433 Sum_probs=24.5
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhc
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIG 30 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~ 30 (103)
|.--+||+|.+|+||-.+|..+++.++
T Consensus 487 p~~~~ll~G~~GtGKT~la~~la~~l~ 513 (758)
T 1r6b_X 487 PVGSFLFAGPTGVGKTEVTVQLSKALG 513 (758)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CceEEEEECCCCCcHHHHHHHHHHHhc
Confidence 556799999999999999999999985
No 189
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=86.45 E-value=0.51 Score=34.50 Aligned_cols=23 Identities=26% Similarity=0.283 Sum_probs=21.5
Q ss_pred EEEecCcCCchhHHHHHHHHHhc
Q psy4713 8 LLFSGKRKSGKDFLTDYLLERIG 30 (103)
Q Consensus 8 iL~sGKrksGKDy~a~~l~~~l~ 30 (103)
+||+|.+|+||-.++..+...+.
T Consensus 61 ~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 79999999999999999999875
No 190
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=86.18 E-value=0.53 Score=34.26 Aligned_cols=27 Identities=22% Similarity=0.250 Sum_probs=23.1
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhc
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIG 30 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~ 30 (103)
+--++.|+|.+||||+=+.+.|...+.
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 445788999999999999999988764
No 191
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=86.08 E-value=0.53 Score=34.34 Aligned_cols=37 Identities=14% Similarity=0.258 Sum_probs=28.1
Q ss_pred EEEEEecCcCCchhHHHHHHHHHhcccce-EEEecchh
Q psy4713 6 LILLFSGKRKSGKDFLTDYLLERIGSQHC-AIIRLSAP 42 (103)
Q Consensus 6 lIiL~sGKrksGKDy~a~~l~~~l~~~~~-~iv~iS~p 42 (103)
.+|+|.|-.||||.-.++.|.+.|..... .++-..+|
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~~~rep 41 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTREP 41 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCCcceeeeCC
Confidence 57789999999999999999999976332 33434444
No 192
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=85.93 E-value=1.9 Score=29.73 Aligned_cols=55 Identities=18% Similarity=0.147 Sum_probs=36.3
Q ss_pred eEEEEEecCcCCchhHHHHHHHHH--hc------ccceEEEecchh--h--HHHHHHHcCccHHHhc
Q psy4713 5 KLILLFSGKRKSGKDFLTDYLLER--IG------SQHCAIIRLSAP--I--KSHWAKQNGLEMDKLL 59 (103)
Q Consensus 5 klIiL~sGKrksGKDy~a~~l~~~--l~------~~~~~iv~iS~p--i--K~~yA~~~glDl~~LL 59 (103)
--+++|.|.+||||=-++..+... +. ...+..+...++ . -.++++..|.+.++++
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~ 90 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVL 90 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHh
Confidence 347899999999999999988874 31 123333444331 1 2356778899986543
No 193
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=85.87 E-value=1.3 Score=31.90 Aligned_cols=34 Identities=21% Similarity=0.307 Sum_probs=27.4
Q ss_pred EEEEecCcCCchhHHHHHHHHHhcccceEEEecch
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSA 41 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~ 41 (103)
+++|+|.+|+||=-++..+.+.+.. .+..++.+.
T Consensus 32 ~v~i~G~~G~GKT~L~~~~~~~~~~-~~~~~~~~~ 65 (357)
T 2fna_A 32 ITLVLGLRRTGKSSIIKIGINELNL-PYIYLDLRK 65 (357)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTC-CEEEEEGGG
T ss_pred cEEEECCCCCCHHHHHHHHHHhcCC-CEEEEEchh
Confidence 7899999999999999999988764 355566553
No 194
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=85.85 E-value=0.77 Score=35.26 Aligned_cols=28 Identities=25% Similarity=0.330 Sum_probs=24.2
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhcc
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIGS 31 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~~ 31 (103)
|..-|||+|.+|+||-.++..+...++.
T Consensus 147 ~~~~vLL~GppGtGKT~la~aia~~~~~ 174 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLAKAVAAESNA 174 (389)
T ss_dssp CCSEEEEESSTTSCHHHHHHHHHHHTTC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhhcC
Confidence 3456899999999999999999998763
No 195
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=85.82 E-value=0.58 Score=39.34 Aligned_cols=34 Identities=18% Similarity=0.278 Sum_probs=27.1
Q ss_pred EEEecCcCCchhHHHHHHHHHhcc-------cceEEEecch
Q psy4713 8 LLFSGKRKSGKDFLTDYLLERIGS-------QHCAIIRLSA 41 (103)
Q Consensus 8 iL~sGKrksGKDy~a~~l~~~l~~-------~~~~iv~iS~ 41 (103)
+||.|.+|+||-.++..++..+.. ..+.+++++.
T Consensus 204 vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~ 244 (758)
T 3pxi_A 204 PVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM 244 (758)
T ss_dssp EEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC--
T ss_pred eEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc
Confidence 689999999999999999999843 2567777765
No 196
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.79 E-value=0.97 Score=37.02 Aligned_cols=36 Identities=28% Similarity=0.377 Sum_probs=27.9
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchh
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAP 42 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~p 42 (103)
|+-=||+.|.+|+||=.+|..++..++ +.+++++.+
T Consensus 214 ~prGvLL~GPPGtGKTllAkAiA~e~~---~~~~~v~~s 249 (437)
T 4b4t_L 214 PPKGVLLYGPPGTGKTLLAKAVAATIG---ANFIFSPAS 249 (437)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHT---CEEEEEEGG
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhC---CCEEEEehh
Confidence 444578889999999999999999986 445555543
No 197
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=85.68 E-value=0.77 Score=38.34 Aligned_cols=66 Identities=26% Similarity=0.386 Sum_probs=40.2
Q ss_pred eEEEEEecCcCCchhHHHHHHHHHhcc-------cceEEEecchhhHHHHHHHcCccHHHhcCCCCcHHHhHHHHHHHHH
Q psy4713 5 KLILLFSGKRKSGKDFLTDYLLERIGS-------QHCAIIRLSAPIKSHWAKQNGLEMDKLLGATKYKEKYRAEMITWSE 77 (103)
Q Consensus 5 klIiL~sGKrksGKDy~a~~l~~~l~~-------~~~~iv~iS~piK~~yA~~~glDl~~LL~d~~YKE~~R~~mi~wge 77 (103)
+.-+||+|.+|+||-.++..+...+.. ..+.++.+ |+..++....|.......+-.+++
T Consensus 207 ~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~--------------~~~~l~~~~~~~g~~e~~l~~~~~ 272 (758)
T 1r6b_X 207 KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL--------------DIGSLLAGTKYRGDFEKRFKALLK 272 (758)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEEC--------------CCC---CCCCCSSCHHHHHHHHHH
T ss_pred CCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEE--------------cHHHHhccccccchHHHHHHHHHH
Confidence 344689999999999999999998853 13444443 334444434455555555555555
Q ss_pred HHhccCh
Q psy4713 78 AERRKDN 84 (103)
Q Consensus 78 ~~R~~D~ 84 (103)
+-++..+
T Consensus 273 ~~~~~~~ 279 (758)
T 1r6b_X 273 QLEQDTN 279 (758)
T ss_dssp HHSSSSC
T ss_pred HHHhcCC
Confidence 5555433
No 198
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.44 E-value=1 Score=36.82 Aligned_cols=36 Identities=22% Similarity=0.337 Sum_probs=27.8
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchh
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAP 42 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~p 42 (103)
|+-=||+.|.+|+||=.+|..++..++ +.++++|.+
T Consensus 214 ~prGvLLyGPPGTGKTllAkAiA~e~~---~~f~~v~~s 249 (434)
T 4b4t_M 214 APKGALMYGPPGTGKTLLARACAAQTN---ATFLKLAAP 249 (434)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHT---CEEEEEEGG
T ss_pred CCCeeEEECcCCCCHHHHHHHHHHHhC---CCEEEEehh
Confidence 344578899999999999999999986 455555543
No 199
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=85.37 E-value=0.63 Score=38.86 Aligned_cols=27 Identities=11% Similarity=0.138 Sum_probs=25.0
Q ss_pred eEEEEEecCcCCchhHHHHHHHHHhcc
Q psy4713 5 KLILLFSGKRKSGKDFLTDYLLERIGS 31 (103)
Q Consensus 5 klIiL~sGKrksGKDy~a~~l~~~l~~ 31 (103)
-.+|+|+|-+||||--++..|+++|+.
T Consensus 395 ~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 395 GFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp CEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred ceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 378999999999999999999999984
No 200
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=85.18 E-value=0.81 Score=38.00 Aligned_cols=27 Identities=15% Similarity=0.294 Sum_probs=24.5
Q ss_pred eEEEEEecCcCCchhHHHHHHHHHhcc
Q psy4713 5 KLILLFSGKRKSGKDFLTDYLLERIGS 31 (103)
Q Consensus 5 klIiL~sGKrksGKDy~a~~l~~~l~~ 31 (103)
..+|+|+|-.||||.-++..|.+.++.
T Consensus 372 ~~~I~l~G~~GsGKSTia~~La~~L~~ 398 (546)
T 2gks_A 372 GFCVWLTGLPCAGKSTIAEILATMLQA 398 (546)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred ceEEEccCCCCCCHHHHHHHHHHHhhh
Confidence 467899999999999999999999875
No 201
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=85.18 E-value=0.74 Score=34.80 Aligned_cols=26 Identities=23% Similarity=0.110 Sum_probs=23.3
Q ss_pred EEEEEecCcCCchhHHHHHHHHHhcc
Q psy4713 6 LILLFSGKRKSGKDFLTDYLLERIGS 31 (103)
Q Consensus 6 lIiL~sGKrksGKDy~a~~l~~~l~~ 31 (103)
-.+||+|..|+||.-++..+++.+..
T Consensus 25 ~a~L~~G~~G~GKt~~a~~la~~l~~ 50 (334)
T 1a5t_A 25 HALLIQALPGMGDDALIYALSRYLLC 50 (334)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred eeEEEECCCCchHHHHHHHHHHHHhC
Confidence 36899999999999999999998863
No 202
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=85.16 E-value=0.61 Score=32.68 Aligned_cols=26 Identities=23% Similarity=0.280 Sum_probs=21.3
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHh
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERI 29 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l 29 (103)
|.-++.|.|.+||||.=+.+.|...+
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 44577899999999999999998765
No 203
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=85.04 E-value=3.1 Score=28.69 Aligned_cols=53 Identities=13% Similarity=0.211 Sum_probs=35.6
Q ss_pred EEEEEecCcCCchhHHHHHHHH--H-hcccceEEEecchhhHH--HHHHHcCccHHHh
Q psy4713 6 LILLFSGKRKSGKDFLTDYLLE--R-IGSQHCAIIRLSAPIKS--HWAKQNGLEMDKL 58 (103)
Q Consensus 6 lIiL~sGKrksGKDy~a~~l~~--~-l~~~~~~iv~iS~piK~--~yA~~~glDl~~L 58 (103)
=|++|.|.+||||==+...+.. . .....+.++....+.++ +.++..|.+++..
T Consensus 31 ~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 88 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRREMASFGWDFEKY 88 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHHTTTCCHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHHHcCCChHHH
Confidence 4788999999999999988873 3 12245555655555443 3345678888775
No 204
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=84.97 E-value=0.88 Score=37.07 Aligned_cols=38 Identities=18% Similarity=0.268 Sum_probs=30.5
Q ss_pred CCeEEEEEecCcCCchhHHHHHHHHHhcc--cceEEEecc
Q psy4713 3 QPKLILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRLS 40 (103)
Q Consensus 3 ~pklIiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~iS 40 (103)
+++.|+++|||-|+||=.+|-.++..+.+ .++-+|+..
T Consensus 6 ~~~~i~~~sgkGGvGKTT~a~~lA~~lA~~G~rVLlvd~D 45 (589)
T 1ihu_A 6 NIPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTD 45 (589)
T ss_dssp SCCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CCCEEEEEeCCCcCHHHHHHHHHHHHHHHCCCcEEEEECC
Confidence 45678899999999999999999988865 456666554
No 205
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=84.91 E-value=0.94 Score=37.03 Aligned_cols=34 Identities=18% Similarity=0.344 Sum_probs=26.5
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecc
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLS 40 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS 40 (103)
+..-|||+|.+|+||-.++..+...++ +.++.++
T Consensus 237 ~~~~vLL~GppGtGKT~lAraia~~~~---~~fv~vn 270 (489)
T 3hu3_A 237 PPRGILLYGPPGTGKTLIARAVANETG---AFFFLIN 270 (489)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHCS---SEEEEEE
T ss_pred CCCcEEEECcCCCCHHHHHHHHHHHhC---CCEEEEE
Confidence 334588999999999999999998874 4445554
No 206
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=84.78 E-value=1.4 Score=34.24 Aligned_cols=37 Identities=14% Similarity=0.170 Sum_probs=30.1
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhcc--cceEEEecc
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRLS 40 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~iS 40 (103)
.+.|+++|||-|+||=.+|-.++..+.+ .++.+|..-
T Consensus 15 ~~~i~~~sgkGGvGKTt~a~~lA~~la~~g~~vllid~D 53 (334)
T 3iqw_A 15 SLRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLSTD 53 (334)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEEECC
T ss_pred CeEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEECC
Confidence 3678899999999999999999998876 456666653
No 207
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=84.72 E-value=0.96 Score=37.83 Aligned_cols=36 Identities=22% Similarity=0.359 Sum_probs=28.2
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchh
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAP 42 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~p 42 (103)
|+-=||+.|..|+||=.+|..+++.++ +.++++|.+
T Consensus 242 pprGILLyGPPGTGKTlLAkAiA~e~~---~~fi~vs~s 277 (467)
T 4b4t_H 242 PPKGILLYGPPGTGKTLCARAVANRTD---ATFIRVIGS 277 (467)
T ss_dssp CCSEEEECSCTTSSHHHHHHHHHHHHT---CEEEEEEGG
T ss_pred CCCceEeeCCCCCcHHHHHHHHHhccC---CCeEEEEhH
Confidence 444578899999999999999999986 455555543
No 208
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=84.67 E-value=1.2 Score=32.13 Aligned_cols=32 Identities=25% Similarity=0.307 Sum_probs=25.5
Q ss_pred EEEEecCcCCchhHHHHHHHHHhcccceEEEecch
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSA 41 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~ 41 (103)
+++|+|.+|+||=-++..+.+.++ +..++.++
T Consensus 33 ~v~i~G~~G~GKT~Ll~~~~~~~~---~~~~~~~~ 64 (350)
T 2qen_A 33 LTLLLGIRRVGKSSLLRAFLNERP---GILIDCRE 64 (350)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHSS---EEEEEHHH
T ss_pred eEEEECCCcCCHHHHHHHHHHHcC---cEEEEeec
Confidence 688999999999999999988863 44555543
No 209
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=84.60 E-value=1.6 Score=30.34 Aligned_cols=38 Identities=11% Similarity=0.222 Sum_probs=31.0
Q ss_pred CCCeEEEEEecCcCCchhHHHHHHHHHhccc---ceEEEec
Q psy4713 2 TQPKLILLFSGKRKSGKDFLTDYLLERIGSQ---HCAIIRL 39 (103)
Q Consensus 2 ~~pklIiL~sGKrksGKDy~a~~l~~~l~~~---~~~iv~i 39 (103)
.++++|.+.|+|-|+||=.+|-.|+..|.+. ++.+|-.
T Consensus 2 ~~~~vI~v~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~ 42 (245)
T 3ea0_A 2 NAKRVFGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAVDI 42 (245)
T ss_dssp -CCEEEEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEEEEC
T ss_pred CCCeEEEEECCCCCcchHHHHHHHHHHHHhCcCCCEEEEEC
Confidence 4678999999999999999999999998753 4555554
No 210
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=84.56 E-value=0.9 Score=34.53 Aligned_cols=37 Identities=8% Similarity=-0.006 Sum_probs=28.3
Q ss_pred CCeEEEEEecCcCCchhHHHHHHHHHhcc--cceEEEec
Q psy4713 3 QPKLILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRL 39 (103)
Q Consensus 3 ~pklIiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~i 39 (103)
.-++.|+++||.|+||=+++-.+...+.+ ..+.++-+
T Consensus 4 ~g~l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~ 42 (228)
T 2r8r_A 4 RGRLKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVV 42 (228)
T ss_dssp CCCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEe
Confidence 34789999999999999998888887765 24444443
No 211
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=84.25 E-value=1.5 Score=30.33 Aligned_cols=36 Identities=25% Similarity=0.354 Sum_probs=30.1
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhcc--cceEEEec
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRL 39 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~i 39 (103)
++.|.++|+|-|+||=.+|-.|+..|.+ .++.+|-.
T Consensus 2 ~~~i~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~ 39 (237)
T 1g3q_A 2 GRIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDG 39 (237)
T ss_dssp CEEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred ceEEEEecCCCCCCHHHHHHHHHHHHHhcCCeEEEEeC
Confidence 5789999999999999999999998865 45666655
No 212
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=84.19 E-value=0.75 Score=33.99 Aligned_cols=24 Identities=17% Similarity=0.252 Sum_probs=22.0
Q ss_pred EEEecCcCCchhHHHHHHHHHhcc
Q psy4713 8 LLFSGKRKSGKDFLTDYLLERIGS 31 (103)
Q Consensus 8 iL~sGKrksGKDy~a~~l~~~l~~ 31 (103)
+||.|..|+||-.++..+...++.
T Consensus 49 vll~G~pGtGKT~la~~la~~~~~ 72 (331)
T 2r44_A 49 ILLEGVPGLAKTLSVNTLAKTMDL 72 (331)
T ss_dssp EEEESCCCHHHHHHHHHHHHHTTC
T ss_pred EEEECCCCCcHHHHHHHHHHHhCC
Confidence 789999999999999999998864
No 213
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=84.18 E-value=0.67 Score=34.18 Aligned_cols=22 Identities=41% Similarity=0.461 Sum_probs=20.4
Q ss_pred EEEecCcCCchhHHHHHHHHHh
Q psy4713 8 LLFSGKRKSGKDFLTDYLLERI 29 (103)
Q Consensus 8 iL~sGKrksGKDy~a~~l~~~l 29 (103)
++|+|.+|+||--++..+...+
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l 60 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESI 60 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 8999999999999999999965
No 214
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=84.03 E-value=1.1 Score=38.48 Aligned_cols=36 Identities=17% Similarity=0.133 Sum_probs=27.5
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhcccceEEEec
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRL 39 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~i 39 (103)
+..+|+|+|-+||||--++..|.++|.+....++.+
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~l 86 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTL 86 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEe
Confidence 456889999999999999999999984322333334
No 215
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=83.82 E-value=1.4 Score=36.91 Aligned_cols=27 Identities=22% Similarity=0.386 Sum_probs=24.8
Q ss_pred eEEEEEecCcCCchhHHHHHHHHHhcc
Q psy4713 5 KLILLFSGKRKSGKDFLTDYLLERIGS 31 (103)
Q Consensus 5 klIiL~sGKrksGKDy~a~~l~~~l~~ 31 (103)
..+|+|+|-+||||--++..|.++|+.
T Consensus 396 ~~~I~l~GlsGSGKSTiA~~La~~L~~ 422 (573)
T 1m8p_A 396 GFTIFLTGYMNSGKDAIARALQVTLNQ 422 (573)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred ceEEEeecCCCCCHHHHHHHHHHHhcc
Confidence 478999999999999999999999974
No 216
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=83.80 E-value=1.5 Score=31.61 Aligned_cols=36 Identities=25% Similarity=0.305 Sum_probs=29.2
Q ss_pred CCeEEEEEecCcCCchhHHHHHHHHHhcc--cceEEEe
Q psy4713 3 QPKLILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIR 38 (103)
Q Consensus 3 ~pklIiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~ 38 (103)
.++.|.++|||-|+||=.+|-.|+..|.. .++.+|-
T Consensus 17 ~~~vI~v~s~kGGvGKTT~a~nLA~~la~~G~~VlliD 54 (262)
T 2ph1_A 17 IKSRIAVMSGKGGVGKSTVTALLAVHYARQGKKVGILD 54 (262)
T ss_dssp CSCEEEEECSSSCTTHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEEEcCCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 46789999999999999999999988865 3455544
No 217
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=83.54 E-value=1.7 Score=30.79 Aligned_cols=36 Identities=25% Similarity=0.305 Sum_probs=29.8
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhcc--cceEEEec
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRL 39 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~i 39 (103)
++.|.++|+|-|+||=.+|-.|+..|.. .++.+|-.
T Consensus 2 ~~~I~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~ 39 (263)
T 1hyq_A 2 VRTITVASGKGGTGKTTITANLGVALAQLGHDVTIVDA 39 (263)
T ss_dssp CEEEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CeEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEEC
Confidence 5789999999999999999999998865 45666654
No 218
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=83.36 E-value=1.5 Score=31.40 Aligned_cols=34 Identities=15% Similarity=0.163 Sum_probs=27.6
Q ss_pred EEEEEecCcCCchhHHHHHHHHHhcc--cceEEEec
Q psy4713 6 LILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRL 39 (103)
Q Consensus 6 lIiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~i 39 (103)
.++.|+|.+||||--++..|...|.. .++.++..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~ 40 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKH 40 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEe
Confidence 47899999999999999999998865 45666663
No 219
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=83.25 E-value=1.2 Score=37.04 Aligned_cols=36 Identities=17% Similarity=0.377 Sum_probs=27.8
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchh
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAP 42 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~p 42 (103)
|+-=||+.|..|+||=.+|..++..++ +.++++|.+
T Consensus 215 ~prGvLLyGPPGTGKTlLAkAiA~e~~---~~fi~v~~s 250 (437)
T 4b4t_I 215 PPKGVILYGAPGTGKTLLAKAVANQTS---ATFLRIVGS 250 (437)
T ss_dssp CCSEEEEESSTTTTHHHHHHHHHHHHT---CEEEEEESG
T ss_pred CCCCCceECCCCchHHHHHHHHHHHhC---CCEEEEEHH
Confidence 334578899999999999999999986 455555543
No 220
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=83.12 E-value=1.4 Score=33.29 Aligned_cols=35 Identities=14% Similarity=0.221 Sum_probs=28.4
Q ss_pred eEEEEEecCcCCchhHHHHHHHHHhcc--cceEEEec
Q psy4713 5 KLILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRL 39 (103)
Q Consensus 5 klIiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~i 39 (103)
+.|+++|||-|+||=.+|-.++..+.+ .++.+|..
T Consensus 14 ~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~ 50 (324)
T 3zq6_A 14 TTFVFIGGKGGVGKTTISAATALWMARSGKKTLVIST 50 (324)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEeC
Confidence 689999999999999999999888765 34555543
No 221
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=83.01 E-value=4 Score=30.77 Aligned_cols=56 Identities=11% Similarity=0.130 Sum_probs=40.9
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhcc--cceEEEecchhhH----HHHHHHcCccHHHhc
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRLSAPIK----SHWAKQNGLEMDKLL 59 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~iS~piK----~~yA~~~glDl~~LL 59 (103)
|--+++|+|.+|+||=-++-.+...... ..+.++++-.|.. |..+...|.++++|.
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE~s~~~l~~R~~~~~~~i~~~~l~ 128 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEMGKKENIKRLIVTAGSINAQKIK 128 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESSSCHHHHHHHHHHHHTTCCHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECCCCHHHHHHHHHHHHcCCCHHHHh
Confidence 4457899999999999777766654432 4677888877654 444556799999884
No 222
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=82.96 E-value=6.4 Score=31.09 Aligned_cols=57 Identities=11% Similarity=0.239 Sum_probs=41.9
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhcc---cceEEEecchhhHH----HHHHHcCccHHHhcC
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIGS---QHCAIIRLSAPIKS----HWAKQNGLEMDKLLG 60 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~~---~~~~iv~iS~piK~----~yA~~~glDl~~LL~ 60 (103)
|.-+++|.|.+|+||=-++..+...+.. ..+.++++..|-.+ -.+...|.++++|..
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s~~~l~~r~~~~~~~~~~~~l~~ 265 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMSAQQLVMRMLCAEGNINAQNLRT 265 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSCHHHHHHHHHHHHHTCCHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHHcCCCHHHHhc
Confidence 3447899999999999888777766532 36888887766433 335678999999854
No 223
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=82.84 E-value=1.8 Score=30.38 Aligned_cols=36 Identities=19% Similarity=0.363 Sum_probs=29.7
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhcc--cceEEEec
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRL 39 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~i 39 (103)
+++|.+.|+|.|+||=.+|-.|+..|.+ .++.+|-.
T Consensus 2 ~~vi~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~ 39 (260)
T 3q9l_A 2 ARIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDF 39 (260)
T ss_dssp CEEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CeEEEEECCCCCCcHHHHHHHHHHHHHhCCCcEEEEEC
Confidence 5789999999999999999999998875 45555544
No 224
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=82.84 E-value=0.97 Score=35.95 Aligned_cols=36 Identities=14% Similarity=0.158 Sum_probs=27.1
Q ss_pred EEEEEecCcCCchhHHHHHHHHHhccc--ceEEEecch
Q psy4713 6 LILLFSGKRKSGKDFLTDYLLERIGSQ--HCAIIRLSA 41 (103)
Q Consensus 6 lIiL~sGKrksGKDy~a~~l~~~l~~~--~~~iv~iS~ 41 (103)
--++|+|.+|+||-.++..+...+... ...++.++.
T Consensus 131 ~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~ 168 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS 168 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeH
Confidence 357899999999999999999988432 344444443
No 225
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=82.69 E-value=2 Score=31.94 Aligned_cols=31 Identities=23% Similarity=0.423 Sum_probs=25.2
Q ss_pred EEEecCcCCchhHHHHHHHHHhcccceEEEecch
Q psy4713 8 LLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSA 41 (103)
Q Consensus 8 iL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~ 41 (103)
+++.|.+||||=.++..+...++. ..+.+++
T Consensus 47 vlL~Gp~GtGKTtLakala~~~~~---~~i~i~g 77 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANESGL---NFISVKG 77 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHTTC---EEEEEET
T ss_pred EEEECCCCCcHHHHHHHHHHHcCC---CEEEEEc
Confidence 899999999999999999988764 3455543
No 226
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=82.67 E-value=1.6 Score=29.46 Aligned_cols=35 Identities=20% Similarity=0.230 Sum_probs=28.9
Q ss_pred eEEEEEecCcCCchhHHHHHHHHHhcc--cceEEEec
Q psy4713 5 KLILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRL 39 (103)
Q Consensus 5 klIiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~i 39 (103)
++|.+.|+|-|+||=.+|-.|+..+.. .++.+|-.
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD~ 38 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALSRSGYNIAVVDT 38 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEEC
Confidence 678888999999999999999988876 45666654
No 227
>2p6w_A VP54, putative glycosyltransferase (mannosyltransferase in glycosylating the PBCV-1 major...; HET: FLC; 1.60A {Paramecium bursaria chlorella virus 1} PDB: 2p72_A* 2p73_A*
Probab=82.48 E-value=0.28 Score=37.95 Aligned_cols=38 Identities=21% Similarity=0.368 Sum_probs=25.4
Q ss_pred CCCCeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHHHcCccH
Q psy4713 1 MTQPKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQNGLEM 55 (103)
Q Consensus 1 ~~~pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~~~glDl 55 (103)
|+.|+ |+|+||+.- ..|.+++-|---|..||+.||.++
T Consensus 3 ~~~p~-IllvtGs~p----------------~ew~yl~ksiKNK~DYArrHGYel 40 (213)
T 2p6w_A 3 MTTPC-ITILSGHFP----------------KETIYARKTKELVEEYCSIHGYNF 40 (213)
T ss_dssp ---CC-EEEEEECSC----------------TTCHHHHHHHHHHHHHHHHHTCEE
T ss_pred CCCce-EEEEeCCCC----------------CCcHHHHHHHHHHHHHHHHcCCeE
Confidence 55665 677888753 245566666677999999999765
No 228
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=82.40 E-value=1.2 Score=30.17 Aligned_cols=24 Identities=17% Similarity=0.299 Sum_probs=21.2
Q ss_pred EEEEEecCcCCchhHHHHHHHHHh
Q psy4713 6 LILLFSGKRKSGKDFLTDYLLERI 29 (103)
Q Consensus 6 lIiL~sGKrksGKDy~a~~l~~~l 29 (103)
-|++|+|.+||||--++..|...+
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~~ 26 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQL 26 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCcHHHHHHHHhccc
Confidence 478899999999999999998754
No 229
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=82.32 E-value=1.6 Score=31.19 Aligned_cols=37 Identities=24% Similarity=0.284 Sum_probs=29.7
Q ss_pred CCeEEEEEecCcCCchhHHHHHHHHHhcc-cceEEEec
Q psy4713 3 QPKLILLFSGKRKSGKDFLTDYLLERIGS-QHCAIIRL 39 (103)
Q Consensus 3 ~pklIiL~sGKrksGKDy~a~~l~~~l~~-~~~~iv~i 39 (103)
++++|.++|+|-|+||=-+|-.|+..|.. .++.+|-.
T Consensus 26 ~~~vI~v~s~kGGvGKTT~a~~LA~~la~g~~VlliD~ 63 (267)
T 3k9g_A 26 KPKIITIASIKGGVGKSTSAIILATLLSKNNKVLLIDM 63 (267)
T ss_dssp CCEEEEECCSSSSSCHHHHHHHHHHHHTTTSCEEEEEE
T ss_pred CCeEEEEEeCCCCchHHHHHHHHHHHHHCCCCEEEEEC
Confidence 57899999999999999999999988863 34555543
No 230
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=82.30 E-value=1.3 Score=35.70 Aligned_cols=25 Identities=16% Similarity=0.304 Sum_probs=22.7
Q ss_pred EEEEecCcCCchhHHHHHHHHHhcc
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIGS 31 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~~ 31 (103)
-+||+|.+|+||-.++..+.+.++.
T Consensus 52 ~vLL~GppGtGKTtlAr~ia~~~~~ 76 (447)
T 3pvs_A 52 SMILWGPPGTGKTTLAEVIARYANA 76 (447)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred EEEEECCCCCcHHHHHHHHHHHhCC
Confidence 5899999999999999999999753
No 231
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=82.09 E-value=1.7 Score=37.35 Aligned_cols=61 Identities=20% Similarity=0.296 Sum_probs=35.3
Q ss_pred EEEEecCcCCchhHHHHHHHHHhcc-------cceEEEecchhhHHHHHHHcCccHHHhcCCCCcHHHhHHHHHHHHHHH
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIGS-------QHCAIIRLSAPIKSHWAKQNGLEMDKLLGATKYKEKYRAEMITWSEAE 79 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~~-------~~~~iv~iS~piK~~yA~~~glDl~~LL~d~~YKE~~R~~mi~wge~~ 79 (103)
-+||+|.+|+||-.++..++..+.. ..+.++.++- ..+.....|.......+-.++++.
T Consensus 193 ~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~--------------~~l~~g~~~~g~~~~~l~~~~~~~ 258 (854)
T 1qvr_A 193 NPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQM--------------GSLLAGAKYRGEFEERLKAVIQEV 258 (854)
T ss_dssp CCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-------------------------CHHHHHHHHHHHH
T ss_pred ceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeeh--------------HHhhccCccchHHHHHHHHHHHHH
Confidence 4688999999999999999999843 1456666542 233333344444455555555555
Q ss_pred hc
Q psy4713 80 RR 81 (103)
Q Consensus 80 R~ 81 (103)
+.
T Consensus 259 ~~ 260 (854)
T 1qvr_A 259 VQ 260 (854)
T ss_dssp HT
T ss_pred Hh
Confidence 54
No 232
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=81.92 E-value=1 Score=33.63 Aligned_cols=26 Identities=19% Similarity=0.281 Sum_probs=23.3
Q ss_pred EEEEEecCcCCchhHHHHHHHHHhcc
Q psy4713 6 LILLFSGKRKSGKDFLTDYLLERIGS 31 (103)
Q Consensus 6 lIiL~sGKrksGKDy~a~~l~~~l~~ 31 (103)
-+|.|+|.+||||--++..|...++-
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg~ 74 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLGY 74 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 36889999999999999999999873
No 233
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=81.80 E-value=1.3 Score=34.60 Aligned_cols=27 Identities=15% Similarity=0.293 Sum_probs=22.9
Q ss_pred eEEEEEecCcCCchhHHHHHHHHHhcc
Q psy4713 5 KLILLFSGKRKSGKDFLTDYLLERIGS 31 (103)
Q Consensus 5 klIiL~sGKrksGKDy~a~~l~~~l~~ 31 (103)
..-|+++|++|+||..+|..++.....
T Consensus 160 ~~~vli~Ge~GtGK~~lAr~ih~~s~r 186 (387)
T 1ny5_A 160 ECPVLITGESGVGKEVVARLIHKLSDR 186 (387)
T ss_dssp CSCEEEECSTTSSHHHHHHHHHHHSTT
T ss_pred CCCeEEecCCCcCHHHHHHHHHHhcCC
Confidence 345799999999999999999987654
No 234
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=81.60 E-value=2.2 Score=30.89 Aligned_cols=23 Identities=22% Similarity=0.291 Sum_probs=21.4
Q ss_pred EEEecCcCCchhHHHHHHHHHhc
Q psy4713 8 LLFSGKRKSGKDFLTDYLLERIG 30 (103)
Q Consensus 8 iL~sGKrksGKDy~a~~l~~~l~ 30 (103)
++|.|.+||||-.++..+...+.
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~~~ 98 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGEAR 98 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCcChHHHHHHHHHHHcC
Confidence 78999999999999999998875
No 235
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=81.54 E-value=2.4 Score=31.96 Aligned_cols=36 Identities=17% Similarity=0.278 Sum_probs=29.7
Q ss_pred CCeEEEEEecCcCCchhHHHHHHHHHhcc--cceEEEe
Q psy4713 3 QPKLILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIR 38 (103)
Q Consensus 3 ~pklIiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~ 38 (103)
++++|.+.|+|.|+||=.+|-.|+..+.+ .++.+|-
T Consensus 91 ~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID 128 (286)
T 3la6_A 91 QNNVLMMTGVSPSIGMTFVCANLAAVISQTNKRVLLID 128 (286)
T ss_dssp TCCEEEEEESSSSSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEe
Confidence 46899999999999999999999999876 3455543
No 236
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=81.53 E-value=0.71 Score=33.38 Aligned_cols=30 Identities=13% Similarity=0.096 Sum_probs=24.4
Q ss_pred CCCCeEEEEEecCcCCchhHHHHHHHHHhc
Q psy4713 1 MTQPKLILLFSGKRKSGKDFLTDYLLERIG 30 (103)
Q Consensus 1 ~~~pklIiL~sGKrksGKDy~a~~l~~~l~ 30 (103)
|.++..+|+|.|-.||||--+++.|++.+.
T Consensus 20 ~~~~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 20 EGTRIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp ---CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred cccCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 344557889999999999999999999985
No 237
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=81.22 E-value=2 Score=30.35 Aligned_cols=34 Identities=21% Similarity=0.282 Sum_probs=25.5
Q ss_pred EEEEEecCcCCchhHHHHHHHHHhcc--cceEEEec
Q psy4713 6 LILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRL 39 (103)
Q Consensus 6 lIiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~i 39 (103)
-++.|+|.+||||-=+.+.|...+.. .++.++..
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~ 42 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKH 42 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEee
Confidence 36789999999999999988887754 23444443
No 238
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=81.08 E-value=2 Score=31.95 Aligned_cols=35 Identities=14% Similarity=0.358 Sum_probs=26.9
Q ss_pred EEEEE--ecCcCCchhHHHHHHHHHhccc------ceEEEecc
Q psy4713 6 LILLF--SGKRKSGKDFLTDYLLERIGSQ------HCAIIRLS 40 (103)
Q Consensus 6 lIiL~--sGKrksGKDy~a~~l~~~l~~~------~~~iv~iS 40 (103)
-.++| +|.+|+||=.++..+.+.+... .+.++.++
T Consensus 51 ~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (412)
T 1w5s_A 51 VNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVN 93 (412)
T ss_dssp EEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred CEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEE
Confidence 35666 9999999999999999887532 45666665
No 239
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=81.01 E-value=1.7 Score=33.73 Aligned_cols=26 Identities=19% Similarity=0.414 Sum_probs=22.7
Q ss_pred EEEEEecCcCCchhHHHHHHHHHhcc
Q psy4713 6 LILLFSGKRKSGKDFLTDYLLERIGS 31 (103)
Q Consensus 6 lIiL~sGKrksGKDy~a~~l~~~l~~ 31 (103)
.-+|++|++|+||..+|..++...+.
T Consensus 153 ~~vli~GesGtGKe~lAr~ih~~s~r 178 (368)
T 3dzd_A 153 APVLITGESGTGKEIVARLIHRYSGR 178 (368)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred hhheEEeCCCchHHHHHHHHHHhccc
Confidence 34789999999999999999988765
No 240
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=80.99 E-value=1.5 Score=32.68 Aligned_cols=22 Identities=32% Similarity=0.454 Sum_probs=20.2
Q ss_pred EEEEecCcCCchhHHHHHHHHH
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLER 28 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~ 28 (103)
-|||+|.+|+||-=+|..|.++
T Consensus 18 gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 18 GVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp EEEEEESSSSSHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHc
Confidence 4899999999999999999887
No 241
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=80.90 E-value=1.6 Score=32.97 Aligned_cols=25 Identities=20% Similarity=0.275 Sum_probs=22.6
Q ss_pred EEEEEecCcCCchhHHHHHHHHHhc
Q psy4713 6 LILLFSGKRKSGKDFLTDYLLERIG 30 (103)
Q Consensus 6 lIiL~sGKrksGKDy~a~~l~~~l~ 30 (103)
-+++|.|.+|+||=-++..+...++
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l~ 76 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASELQ 76 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhC
Confidence 4588999999999999999999885
No 242
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=80.68 E-value=2.2 Score=33.43 Aligned_cols=37 Identities=14% Similarity=0.211 Sum_probs=30.4
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhc--c--cceEEEecc
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIG--S--QHCAIIRLS 40 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~--~--~~~~iv~iS 40 (103)
++-|+++|||-|+||=.+|-.++..+. . .++.+|..-
T Consensus 17 ~~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid~D 57 (348)
T 3io3_A 17 SLKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLISTD 57 (348)
T ss_dssp TCSEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEECC
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECC
Confidence 467889999999999999999998887 5 466666654
No 243
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=80.30 E-value=1.7 Score=35.74 Aligned_cols=31 Identities=19% Similarity=0.382 Sum_probs=24.9
Q ss_pred EEEecCcCCchhHHHHHHHHHhcccceEEEecch
Q psy4713 8 LLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSA 41 (103)
Q Consensus 8 iL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~ 41 (103)
||+.|.+|+||-.++..+...++ +..+++|.
T Consensus 52 vLL~GppGtGKT~Laraia~~~~---~~f~~is~ 82 (476)
T 2ce7_A 52 ILLVGPPGTGKTLLARAVAGEAN---VPFFHISG 82 (476)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHT---CCEEEEEG
T ss_pred EEEECCCCCCHHHHHHHHHHHcC---CCeeeCCH
Confidence 78999999999999999999875 34444543
No 244
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=80.21 E-value=1.6 Score=34.26 Aligned_cols=40 Identities=25% Similarity=0.454 Sum_probs=31.4
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhccc-ceEEEecchhh
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIGSQ-HCAIIRLSAPI 43 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~~~-~~~iv~iS~pi 43 (103)
|.=+++|+|.+||||-=+...+...+... ...|+.+-+|+
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~ 162 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPI 162 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcH
Confidence 55589999999999998888888777653 45677777765
No 245
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=80.09 E-value=2.4 Score=32.64 Aligned_cols=38 Identities=5% Similarity=0.068 Sum_probs=31.3
Q ss_pred CCeEEEEEecCcCCchhHHHHHHHHHhcc--cceEEEecc
Q psy4713 3 QPKLILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRLS 40 (103)
Q Consensus 3 ~pklIiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~iS 40 (103)
++++|.++|||-|+||=-+|-.|+..|.. .++.+|-.-
T Consensus 142 ~~kvIav~s~KGGvGKTT~a~nLA~~La~~g~rVlliD~D 181 (373)
T 3fkq_A 142 KSSVVIFTSPCGGVGTSTVAAACAIAHANMGKKVFYLNIE 181 (373)
T ss_dssp SCEEEEEECSSTTSSHHHHHHHHHHHHHHHTCCEEEEECC
T ss_pred CceEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 57899999999999999999999988865 466666643
No 246
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=79.93 E-value=1.7 Score=35.92 Aligned_cols=31 Identities=23% Similarity=0.288 Sum_probs=25.3
Q ss_pred EEEecCcCCchhHHHHHHHHHhcccceEEEecch
Q psy4713 8 LLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSA 41 (103)
Q Consensus 8 iL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~ 41 (103)
|||.|.+|+||-.++..+...++ +..+.+++
T Consensus 67 vLL~GppGtGKTtLaraIa~~~~---~~~i~i~g 97 (499)
T 2dhr_A 67 VLLVGPPGVGKTHLARAVAGEAR---VPFITASG 97 (499)
T ss_dssp EEEECSSSSSHHHHHHHHHHHTT---CCEEEEEG
T ss_pred EEEECCCCCCHHHHHHHHHHHhC---CCEEEEeh
Confidence 88999999999999999998875 44455554
No 247
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=79.89 E-value=1.8 Score=32.64 Aligned_cols=67 Identities=24% Similarity=0.339 Sum_probs=42.5
Q ss_pred EEEEEecCcCCchhHHHHHHHHHhcc----cceEEEecch--------hhHHHHHHHcC---ccHHHhcCCCCcHHHhHH
Q psy4713 6 LILLFSGKRKSGKDFLTDYLLERIGS----QHCAIIRLSA--------PIKSHWAKQNG---LEMDKLLGATKYKEKYRA 70 (103)
Q Consensus 6 lIiL~sGKrksGKDy~a~~l~~~l~~----~~~~iv~iS~--------piK~~yA~~~g---lDl~~LL~d~~YKE~~R~ 70 (103)
..|+|+|.++|||-=+|..|.+++.+ +.+.|.+..+ |+-+++-+..| +|.++..+.+.|.+.-+-
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~g~~iIsdDs~~v~~~~~~~liGtak~~i~h~lEiRGigiid~~~~f~~~~f~~~a~i 114 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQRGHRLIADDRVDVYQQDEQTIVGAAPPILSHLLEIRGLGIIDVMNLFGAGAVREDTTI 114 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTTTCEEEESSEEEEEECSTTCEEEECCSSSTTEEEETTTEEEEHHHHHCTTSBCSCCBC
T ss_pred EEEEEECCCCCCHHHHHHHHHHhCCeEEecchhheeecCCceEEEECCccccccccccceeEEcccccCCHHHHHhcCce
Confidence 46899999999999999999998765 4455544433 33222222223 356777777776655444
Q ss_pred HH
Q psy4713 71 EM 72 (103)
Q Consensus 71 ~m 72 (103)
+|
T Consensus 115 ~l 116 (205)
T 2qmh_A 115 SL 116 (205)
T ss_dssp CE
T ss_pred eE
Confidence 33
No 248
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=79.64 E-value=2 Score=35.25 Aligned_cols=27 Identities=26% Similarity=0.386 Sum_probs=24.0
Q ss_pred eEEEEEecCcCCchhHHHHHHHHHhcc
Q psy4713 5 KLILLFSGKRKSGKDFLTDYLLERIGS 31 (103)
Q Consensus 5 klIiL~sGKrksGKDy~a~~l~~~l~~ 31 (103)
.-++||.|.+|+||-.++..+...++.
T Consensus 108 g~~vll~Gp~GtGKTtlar~ia~~l~~ 134 (543)
T 3m6a_A 108 GPILCLAGPPGVGKTSLAKSIAKSLGR 134 (543)
T ss_dssp SCEEEEESSSSSSHHHHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 347899999999999999999999864
No 249
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=79.63 E-value=2.5 Score=30.69 Aligned_cols=49 Identities=14% Similarity=0.121 Sum_probs=34.1
Q ss_pred EEEEEecCcCCchhHHHHHHHHHhcc------------cceEEEecchhhHHH--HHHHcCcc
Q psy4713 6 LILLFSGKRKSGKDFLTDYLLERIGS------------QHCAIIRLSAPIKSH--WAKQNGLE 54 (103)
Q Consensus 6 lIiL~sGKrksGKDy~a~~l~~~l~~------------~~~~iv~iS~piK~~--yA~~~glD 54 (103)
-+++|.|.+||||=-++..+...+.. ..+..++..++.... ++...|.+
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~~~~~~~~r~~~~g~~ 93 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDPPTAIHHRLHALGAH 93 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSCHHHHHHHHHHHHTT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCCCHHHHHHHHHHHHhh
Confidence 37899999999999999888765532 346667777776432 44445544
No 250
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=79.34 E-value=3.1 Score=29.21 Aligned_cols=35 Identities=26% Similarity=0.365 Sum_probs=27.3
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhcc-cceEEEe
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIGS-QHCAIIR 38 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~~-~~~~iv~ 38 (103)
...|++++||.|+||==++..|...+.. .++.+|.
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd 48 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVN 48 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEE
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEe
Confidence 4689999999999999999999877752 3444544
No 251
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=79.20 E-value=1.7 Score=33.97 Aligned_cols=39 Identities=13% Similarity=0.158 Sum_probs=30.5
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhccc-------ceEEEecchh
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIGSQ-------HCAIIRLSAP 42 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~~~-------~~~iv~iS~p 42 (103)
+.-.++|+|++|+||=-++..+.+.+... .+.++.|.+.
T Consensus 44 ~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~ 89 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDAL 89 (318)
T ss_dssp CCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEecc
Confidence 33456899999999999999999998641 4677777743
No 252
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=78.92 E-value=2.2 Score=29.24 Aligned_cols=31 Identities=23% Similarity=0.296 Sum_probs=24.9
Q ss_pred EEEecCcCCchhHHHHHHHHHhcc--cceEEEe
Q psy4713 8 LLFSGKRKSGKDFLTDYLLERIGS--QHCAIIR 38 (103)
Q Consensus 8 iL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~ 38 (103)
|.||||-|+||=-+|-.|+..|.+ .++.+|-
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~~g~~VlliD 35 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMASDYDKIYAVD 35 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTTTCSCEEEEE
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 445999999999999999999976 4555554
No 253
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=78.51 E-value=1.4 Score=38.24 Aligned_cols=24 Identities=17% Similarity=0.344 Sum_probs=20.2
Q ss_pred EEEEecCcCCchhHHHHHHHHHhc
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIG 30 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~ 30 (103)
.|||||+|||||--.|..+.+-|.
T Consensus 96 sIiisGESGAGKTe~tK~i~~yla 119 (697)
T 1lkx_A 96 CVIISGESGAGKTEASKKIMQFLT 119 (697)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEecCCCCCCchhhHHHHHHHHH
Confidence 478999999999988888777664
No 254
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=77.77 E-value=7.4 Score=30.64 Aligned_cols=57 Identities=12% Similarity=0.215 Sum_probs=42.2
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhc---ccceEEEecchhhH----HHHHHHcCccHHHhcC
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIG---SQHCAIIRLSAPIK----SHWAKQNGLEMDKLLG 60 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~---~~~~~iv~iS~piK----~~yA~~~glDl~~LL~ 60 (103)
|--+++|.|.+|+||=-++-.+..... ...+.++++-.|-. |..+...|.|+++|..
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE~~~~~l~~R~~~~~~~i~~~~l~~ 262 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLEMPAAQLTLRMMCSEARIDMNRVRL 262 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSSCHHHHHHHHHHHHTTCCTTTCCG
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHHHcCCCHHHHhC
Confidence 445789999999999887777665543 24688888877754 4557788999988753
No 255
>4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.85A {Brucella melitensis BV}
Probab=77.52 E-value=2.1 Score=31.86 Aligned_cols=72 Identities=14% Similarity=0.193 Sum_probs=42.2
Q ss_pred CCCCeEEEEEecCcCCchhHHHHHHHHHhcc-----cceEEEec-chhhHHHHHHHcCccHHHhcCCCC--cHHHhHHHH
Q psy4713 1 MTQPKLILLFSGKRKSGKDFLTDYLLERIGS-----QHCAIIRL-SAPIKSHWAKQNGLEMDKLLGATK--YKEKYRAEM 72 (103)
Q Consensus 1 ~~~pklIiL~sGKrksGKDy~a~~l~~~l~~-----~~~~iv~i-S~piK~~yA~~~glDl~~LL~d~~--YKE~~R~~m 72 (103)
|+++|+.||+||- | -+...+...+.+ ..+.|++= .++--.++|+++|+..-.+ .... -+|.|-+++
T Consensus 5 m~~~ri~vl~SG~---g--snl~all~~~~~~~l~~~I~~Visn~~~a~~l~~A~~~gIp~~~~-~~~~~~~r~~~d~~~ 78 (209)
T 4ds3_A 5 MKRNRVVIFISGG---G--SNMEALIRAAQAPGFPAEIVAVFSDKAEAGGLAKAEAAGIATQVF-KRKDFASKEAHEDAI 78 (209)
T ss_dssp -CCEEEEEEESSC---C--HHHHHHHHHHTSTTCSEEEEEEEESCTTCTHHHHHHHTTCCEEEC-CGGGSSSHHHHHHHH
T ss_pred CCCccEEEEEECC---c--HHHHHHHHHHHcCCCCcEEEEEEECCcccHHHHHHHHcCCCEEEe-CccccCCHHHHHHHH
Confidence 7778999999885 2 334444444433 23444442 1223357999999875432 1222 377777888
Q ss_pred HHHHHH
Q psy4713 73 ITWSEA 78 (103)
Q Consensus 73 i~wge~ 78 (103)
+++-++
T Consensus 79 ~~~l~~ 84 (209)
T 4ds3_A 79 LAALDV 84 (209)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 777665
No 256
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=77.40 E-value=3.9 Score=31.25 Aligned_cols=36 Identities=14% Similarity=0.078 Sum_probs=27.7
Q ss_pred CCeEEEEEecCcCCchhHHHHHHHHHhcc--cceEEEe
Q psy4713 3 QPKLILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIR 38 (103)
Q Consensus 3 ~pklIiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~ 38 (103)
....+|+|+|+.|+||=-+++.|...+.. .++.++.
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~ 114 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLA 114 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEe
Confidence 34568899999999999999999988744 3444443
No 257
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=77.25 E-value=1.9 Score=30.83 Aligned_cols=36 Identities=17% Similarity=0.159 Sum_probs=29.0
Q ss_pred CCeEEEEEecCcCCchhHHHHHHHHHhcc--cceEEEe
Q psy4713 3 QPKLILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIR 38 (103)
Q Consensus 3 ~pklIiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~ 38 (103)
++++|.+.|+|-|+||=.+|-.|+..|.. .++.+|-
T Consensus 5 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD 42 (257)
T 1wcv_1 5 KVRRIALANQKGGVGKTTTAINLAAYLARLGKRVLLVD 42 (257)
T ss_dssp CCCEEEECCSSCCHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCEEEEEEeCCCCchHHHHHHHHHHHHHHCCCCEEEEE
Confidence 45778888999999999999999998865 4555554
No 258
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=77.18 E-value=2.6 Score=33.59 Aligned_cols=25 Identities=24% Similarity=0.299 Sum_probs=23.1
Q ss_pred EEEEEecCcCCchhHHHHHHHHHhc
Q psy4713 6 LILLFSGKRKSGKDFLTDYLLERIG 30 (103)
Q Consensus 6 lIiL~sGKrksGKDy~a~~l~~~l~ 30 (103)
.+|+|+|-.+|||-=++..|+++++
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred ceEEEECCCCCCHHHHHHHHHHHCC
Confidence 4788999999999999999999986
No 259
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=76.90 E-value=3.6 Score=30.97 Aligned_cols=36 Identities=22% Similarity=0.412 Sum_probs=28.3
Q ss_pred CCeEEEEEecCcCCchhHHHHHHHHHhcc--cceEEEe
Q psy4713 3 QPKLILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIR 38 (103)
Q Consensus 3 ~pklIiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~ 38 (103)
.+++|.+.|.|.|+||=.+|-.|+..+.+ .++.+|-
T Consensus 103 ~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID 140 (299)
T 3cio_A 103 ENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFID 140 (299)
T ss_dssp SCCEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEEE
Confidence 45777788889999999999999998865 3455553
No 260
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=76.79 E-value=4.2 Score=33.39 Aligned_cols=35 Identities=23% Similarity=0.249 Sum_probs=27.9
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhcc--cceEEEe
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIR 38 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~ 38 (103)
+..||+|+|..||||--++..|+..+.. .++.++.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~ 135 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVC 135 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 4678999999999999999999988866 3444443
No 261
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Probab=76.64 E-value=1.7 Score=38.19 Aligned_cols=23 Identities=26% Similarity=0.463 Sum_probs=17.2
Q ss_pred EEEEecCcCCchhHHHHHHHHHh
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERI 29 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l 29 (103)
.|||||+|||||--.|..+.+-|
T Consensus 142 sIiiSGESGAGKTe~tK~i~~yl 164 (784)
T 2v26_A 142 SIIVSGESGAGKTENTKFVLRYL 164 (784)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEcCCCCCCceehHHHHHHHH
Confidence 57899999999986665554443
No 262
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=76.34 E-value=3.1 Score=28.57 Aligned_cols=33 Identities=18% Similarity=0.107 Sum_probs=26.9
Q ss_pred eEEEEEecCcCCchhHHHHHHHHHhcc--cceEEE
Q psy4713 5 KLILLFSGKRKSGKDFLTDYLLERIGS--QHCAII 37 (103)
Q Consensus 5 klIiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv 37 (103)
|.|.+.|+|.|+||=.+|-.|+..|.+ .++.++
T Consensus 2 k~I~v~s~kgGvGKTt~a~nLa~~la~~G~rVll~ 36 (224)
T 1byi_A 2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGY 36 (224)
T ss_dssp EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEE
Confidence 678889999999999999999988865 344444
No 263
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=76.19 E-value=3.4 Score=29.31 Aligned_cols=32 Identities=19% Similarity=0.226 Sum_probs=24.6
Q ss_pred EEEEecCcCCchhHHHHHHHHHhcc--cceEEEe
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIR 38 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~ 38 (103)
||.|+||-|+||=-+|-.|+..|.. .++.+|-
T Consensus 3 vI~vs~KGGvGKTT~a~nLA~~la~~G~~VlliD 36 (269)
T 1cp2_A 3 QVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVG 36 (269)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred EEEEecCCCCcHHHHHHHHHHHHHHCCCcEEEEc
Confidence 4455899999999999999998865 3455543
No 264
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=75.93 E-value=1.4 Score=30.97 Aligned_cols=25 Identities=28% Similarity=0.428 Sum_probs=15.8
Q ss_pred eEEEEEecCcCCchhHHHHHHH-HHh
Q psy4713 5 KLILLFSGKRKSGKDFLTDYLL-ERI 29 (103)
Q Consensus 5 klIiL~sGKrksGKDy~a~~l~-~~l 29 (103)
--|+.|+|.+||||.=+...|. ..+
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 3578899999999999999998 665
No 265
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=75.65 E-value=1.9 Score=38.26 Aligned_cols=25 Identities=20% Similarity=0.252 Sum_probs=20.9
Q ss_pred EEEEecCcCCchhHHHHHHHHHhcc
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIGS 31 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~~ 31 (103)
.|||||+|||||--.|..+.+-|..
T Consensus 171 sIiiSGESGAGKTe~tK~i~~yla~ 195 (837)
T 1kk8_A 171 SCLITGESGAGKTENTKKVIMYLAK 195 (837)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCchhhHHHHHHHHHH
Confidence 5789999999999888888777643
No 266
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=75.58 E-value=1.9 Score=38.01 Aligned_cols=24 Identities=21% Similarity=0.447 Sum_probs=19.9
Q ss_pred EEEEecCcCCchhHHHHHHHHHhc
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIG 30 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~ 30 (103)
.|||||++||||--.|..+..-|.
T Consensus 158 sIiisGESGAGKTe~tK~i~~yla 181 (795)
T 1w7j_A 158 SIIVSGESGAGKTVSAKYAMRYFA 181 (795)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCcchHHHHHHHHHH
Confidence 578999999999988877766664
No 267
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=75.54 E-value=2.8 Score=29.29 Aligned_cols=24 Identities=29% Similarity=0.599 Sum_probs=21.4
Q ss_pred EEEEecCcCCchhHHHHHHHHHhc
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIG 30 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~ 30 (103)
++.|+|.+||||--+...+...++
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 578999999999999999988874
No 268
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=75.31 E-value=1.9 Score=39.04 Aligned_cols=24 Identities=21% Similarity=0.447 Sum_probs=20.6
Q ss_pred EEEEecCcCCchhHHHHHHHHHhc
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIG 30 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~ 30 (103)
.|||||+|||||--.|..+..-|.
T Consensus 158 sIiisGESGAGKTe~~K~i~~yla 181 (1080)
T 2dfs_A 158 SIIVSGESGAGKTVSAKYAMRYFA 181 (1080)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEcCCCCCCccchHHHHHHHHH
Confidence 578999999999988888877764
No 269
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=75.19 E-value=1.9 Score=38.71 Aligned_cols=24 Identities=21% Similarity=0.347 Sum_probs=20.5
Q ss_pred EEEEecCcCCchhHHHHHHHHHhc
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIG 30 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~ 30 (103)
.|||||+|||||--.|..+..-|.
T Consensus 148 sIiisGESGAGKTe~~K~i~~yla 171 (995)
T 2ycu_A 148 SILCTGESGAGKTENTKKVIQYLA 171 (995)
T ss_dssp EEEEECBTTSSHHHHHHHHHHHHH
T ss_pred EEEecCCCCCCchhhHHHHHHHHH
Confidence 478999999999988888877764
No 270
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=74.99 E-value=2.9 Score=32.71 Aligned_cols=41 Identities=24% Similarity=0.399 Sum_probs=31.5
Q ss_pred CCeEEEEEecCcCCchhHHHHHHHHHhccc-ceEEEecchhh
Q psy4713 3 QPKLILLFSGKRKSGKDFLTDYLLERIGSQ-HCAIIRLSAPI 43 (103)
Q Consensus 3 ~pklIiL~sGKrksGKDy~a~~l~~~l~~~-~~~iv~iS~pi 43 (103)
.|.-+++|+|.+||||==+...+...+... .-.|+-+-+|+
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~ 175 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPI 175 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccH
Confidence 355689999999999999999888877543 45666666665
No 271
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=74.93 E-value=4.1 Score=30.19 Aligned_cols=36 Identities=17% Similarity=0.169 Sum_probs=28.2
Q ss_pred CCeEEEEEecCcCCchhHHHHHHHHHhcc--cceEEEe
Q psy4713 3 QPKLILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIR 38 (103)
Q Consensus 3 ~pklIiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~ 38 (103)
.+++|.+.|+|.|+||=.+|-.|+..+.+ .++.+|-
T Consensus 81 ~~kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLID 118 (271)
T 3bfv_A 81 AVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVD 118 (271)
T ss_dssp CCCEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEEe
Confidence 45777778889999999999999999875 3455543
No 272
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=74.88 E-value=2 Score=39.15 Aligned_cols=23 Identities=26% Similarity=0.463 Sum_probs=18.2
Q ss_pred EEEEecCcCCchhHHHHHHHHHh
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERI 29 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l 29 (103)
-|||||++||||--.|..+..-|
T Consensus 146 sIiiSGESGAGKTestK~im~yL 168 (1052)
T 4anj_A 146 SIIVSGESGAGKTENTKFVLRYL 168 (1052)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEecCCCCCHHHHHHHHHHHH
Confidence 58899999999987776665544
No 273
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=74.46 E-value=2.1 Score=30.36 Aligned_cols=25 Identities=28% Similarity=0.344 Sum_probs=21.7
Q ss_pred eEEEEEecCcCCchhHHHHHHHHHh
Q psy4713 5 KLILLFSGKRKSGKDFLTDYLLERI 29 (103)
Q Consensus 5 klIiL~sGKrksGKDy~a~~l~~~l 29 (103)
--++.|.|.+||||.=+.+.|...+
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3477889999999999999998876
No 274
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=74.45 E-value=3.3 Score=33.32 Aligned_cols=41 Identities=29% Similarity=0.409 Sum_probs=33.2
Q ss_pred CCeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhh
Q psy4713 3 QPKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPI 43 (103)
Q Consensus 3 ~pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~pi 43 (103)
.|.=+++|+|.+||||==+...+...+....-.|+-+-+|+
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~i 205 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPI 205 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSC
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccc
Confidence 45668999999999999988888888866556677777776
No 275
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=74.42 E-value=3.9 Score=28.72 Aligned_cols=33 Identities=24% Similarity=0.123 Sum_probs=26.2
Q ss_pred eEEEEEecCcCCchhHHHHHHHHHhccc-ceEEE
Q psy4713 5 KLILLFSGKRKSGKDFLTDYLLERIGSQ-HCAII 37 (103)
Q Consensus 5 klIiL~sGKrksGKDy~a~~l~~~l~~~-~~~iv 37 (103)
++|.++|+|-|+||=.+|-.|+..|... ++.+|
T Consensus 1 kvI~v~s~KGGvGKTT~a~~LA~~la~~g~Vlli 34 (209)
T 3cwq_A 1 MIITVASFKGGVGKTTTAVHLSAYLALQGETLLI 34 (209)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHTTSCEEEE
T ss_pred CEEEEEcCCCCCcHHHHHHHHHHHHHhcCCEEEE
Confidence 3677889999999999999999888654 34443
No 276
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...
Probab=74.38 E-value=2.1 Score=37.71 Aligned_cols=24 Identities=25% Similarity=0.389 Sum_probs=19.5
Q ss_pred EEEEecCcCCchhHHHHHHHHHhc
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIG 30 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~ 30 (103)
.|||||+|||||--.|..+.+-|.
T Consensus 174 sIiisGESGAGKTe~tK~i~~yla 197 (770)
T 1w9i_A 174 SLLITGESGAGKTENTKKVIQYLA 197 (770)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEecCCCCcchHHHHHHHHHHH
Confidence 578999999999988877766554
No 277
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=74.26 E-value=2 Score=38.76 Aligned_cols=24 Identities=25% Similarity=0.389 Sum_probs=20.1
Q ss_pred EEEEecCcCCchhHHHHHHHHHhc
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIG 30 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~ 30 (103)
.|||||+|||||--.|..+..-|.
T Consensus 174 sIiisGESGAGKTe~~K~i~~yla 197 (1010)
T 1g8x_A 174 SLLITGESGAGKTENTKKVIQYLA 197 (1010)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCcchHHHHHHHHHH
Confidence 578999999999988888776664
No 278
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=74.25 E-value=3.3 Score=31.08 Aligned_cols=55 Identities=16% Similarity=0.312 Sum_probs=39.8
Q ss_pred eEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHHH--cCccHHHhcCCC
Q psy4713 5 KLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQ--NGLEMDKLLGAT 62 (103)
Q Consensus 5 klIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~~--~glDl~~LL~d~ 62 (103)
+.-+-|.|-.||||.-.+..|++.++ +..++..+-++++-+.. .|.-+.+.+..+
T Consensus 8 ~~~~~~~G~pGsGKsT~a~~L~~~~g---~~~is~gdllR~~~~~~t~lG~~i~~~~~~G 64 (230)
T 3gmt_A 8 HMRLILLGAPGAGKGTQANFIKEKFG---IPQISTGDMLRAAVKAGTPLGVEAKTYMDEG 64 (230)
T ss_dssp -CEEEEECCTTSCHHHHHHHHHHHHT---CCEECHHHHHHHHHHTTCHHHHHHHHHHTTT
T ss_pred ccceeeECCCCCCHHHHHHHHHHHhC---CCeeechHHHHHhccCCChHHHHHHHHHhhc
Confidence 44567899999999999999999984 67788888777765442 234455555554
No 279
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=74.11 E-value=15 Score=28.76 Aligned_cols=58 Identities=12% Similarity=0.154 Sum_probs=43.0
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhc--ccceEEEecchhh----HHHHHHHcCccHHHhcCC
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIG--SQHCAIIRLSAPI----KSHWAKQNGLEMDKLLGA 61 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~--~~~~~iv~iS~pi----K~~yA~~~glDl~~LL~d 61 (103)
|--+++|.|.+++||=-++..++..+. ...+.++++-.|- .|-.+...|+|+++|...
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlEms~~ql~~Rlls~~~~v~~~~l~~g 108 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLEMSAEQLALRALSDLTSINMHDLESG 108 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESSSCHHHHHHHHHHHHHCCCHHHHHHT
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHHhhCCCHHHHhcC
Confidence 445789999999999887777665543 2577888887664 445566789999998653
No 280
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=74.02 E-value=4.6 Score=30.99 Aligned_cols=37 Identities=19% Similarity=0.143 Sum_probs=30.5
Q ss_pred CCeEEEEEecCcCCchhHHHHHHHHHhc--------ccceEEEec
Q psy4713 3 QPKLILLFSGKRKSGKDFLTDYLLERIG--------SQHCAIIRL 39 (103)
Q Consensus 3 ~pklIiL~sGKrksGKDy~a~~l~~~l~--------~~~~~iv~i 39 (103)
.+++|.++|||-|+||=-+|-.|+..|. ..++.+|-.
T Consensus 107 ~~~vIav~s~KGGvGKTT~a~nLA~~La~~~~~~~~g~rVlliD~ 151 (398)
T 3ez2_A 107 EAYVIFISNLKGGVSKTVSTVSLAHAMRAHPHLLMEDLRILVIDL 151 (398)
T ss_dssp SCEEEEECCSSSSSSHHHHHHHHHHHHHHCTTTGGGCCCEEEEEE
T ss_pred CCeEEEEEeCCCCccHHHHHHHHHHHHHhcchhhcCCCeEEEEeC
Confidence 4789999999999999999999998885 245666654
No 281
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=73.82 E-value=3.4 Score=31.64 Aligned_cols=41 Identities=12% Similarity=0.165 Sum_probs=32.3
Q ss_pred CCeEEEEEecCcCCchhHHHHHHHHHhcc----cceEEEecchhh
Q psy4713 3 QPKLILLFSGKRKSGKDFLTDYLLERIGS----QHCAIIRLSAPI 43 (103)
Q Consensus 3 ~pklIiL~sGKrksGKDy~a~~l~~~l~~----~~~~iv~iS~pi 43 (103)
.+..||.|.|.+||||-=++..|...+.. ..+.+|...+.+
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~~~ 132 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDGFL 132 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGGGB
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecCccC
Confidence 46679999999999999999999998854 346677665543
No 282
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=73.78 E-value=4.6 Score=32.80 Aligned_cols=36 Identities=14% Similarity=0.259 Sum_probs=29.1
Q ss_pred CCeEEEEEecCcCCchhHHHHHHHHHhcc--cceEEEe
Q psy4713 3 QPKLILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIR 38 (103)
Q Consensus 3 ~pklIiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~ 38 (103)
.++.|++++||.|+||--+|-.++..+.. .++.++.
T Consensus 325 ~~~~~~~~~~~~g~Gktt~a~~lA~~l~~~g~~vllvD 362 (589)
T 1ihu_A 325 NEHGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTT 362 (589)
T ss_dssp TSCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cCCeEEEEecCCCCChhhHHHHHHHHHHHCCCcEEEEe
Confidence 35789999999999999999999888865 4555553
No 283
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=73.74 E-value=3.2 Score=35.85 Aligned_cols=35 Identities=17% Similarity=0.339 Sum_probs=26.8
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecch
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSA 41 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~ 41 (103)
|.--|||.|.+||||-.++..+...++ ...+.+++
T Consensus 237 ~~~~vLL~Gp~GtGKTtLarala~~l~---~~~i~v~~ 271 (806)
T 1ypw_A 237 PPRGILLYGPPGTGKTLIARAVANETG---AFFFLING 271 (806)
T ss_dssp CCCEEEECSCTTSSHHHHHHHHHHTTT---CEEEEEEH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHcC---CcEEEEEc
Confidence 344688999999999999999998875 33455543
No 284
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*
Probab=73.52 E-value=2.3 Score=37.52 Aligned_cols=24 Identities=21% Similarity=0.407 Sum_probs=19.9
Q ss_pred EEEEecCcCCchhHHHHHHHHHhc
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIG 30 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~ 30 (103)
.|||||+|||||--.|..+.+-|.
T Consensus 173 sIiiSGESGAGKTe~tK~im~yla 196 (783)
T 4db1_A 173 SILITGESGAGKTVNTKRVIQYFA 196 (783)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred eEEEeCCCCCCCchHHHHHHHhhh
Confidence 478999999999988887776663
No 285
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=72.84 E-value=4.4 Score=28.34 Aligned_cols=25 Identities=20% Similarity=0.121 Sum_probs=19.6
Q ss_pred eEEEEEecCcCCchhHHHHHHHHHh
Q psy4713 5 KLILLFSGKRKSGKDFLTDYLLERI 29 (103)
Q Consensus 5 klIiL~sGKrksGKDy~a~~l~~~l 29 (103)
-.|++++|.++|||=..+-.+..++
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHH
Confidence 3488999999999999885555544
No 286
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=72.75 E-value=3.7 Score=30.51 Aligned_cols=39 Identities=23% Similarity=0.372 Sum_probs=28.0
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhccc-ceEEEecchh
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIGSQ-HCAIIRLSAP 42 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~~~-~~~iv~iS~p 42 (103)
|.=+++|+|.+||||-=+...+...+... .-.|+-.-+|
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~ 63 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDP 63 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESS
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCc
Confidence 55689999999999999988888776433 3444444444
No 287
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=72.69 E-value=3.2 Score=36.60 Aligned_cols=36 Identities=19% Similarity=0.400 Sum_probs=29.1
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchh
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAP 42 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~p 42 (103)
|..=||+.|.+|+||=.++..+++.++ +.++.++.|
T Consensus 237 ~p~GILL~GPPGTGKT~LAraiA~elg---~~~~~v~~~ 272 (806)
T 3cf2_A 237 PPRGILLYGPPGTGKTLIARAVANETG---AFFFLINGP 272 (806)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHTTTT---CEEEEEEHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC---CeEEEEEhH
Confidence 445678999999999999999998875 566666654
No 288
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=72.53 E-value=1.9 Score=38.82 Aligned_cols=25 Identities=20% Similarity=0.320 Sum_probs=21.0
Q ss_pred EEEEecCcCCchhHHHHHHHHHhcc
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIGS 31 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~~ 31 (103)
.|||||+|||||--.|..+..-|..
T Consensus 171 ~i~isGeSGaGKTe~~k~~~~yla~ 195 (1184)
T 1i84_S 171 SILCTGESGAGKTENTKKVIQYLAV 195 (1184)
T ss_dssp EEECCCSTTSSTTHHHHHHHHHHHH
T ss_pred EEEEecCCCCCccHHHHHHHHHHHH
Confidence 5789999999999888888777643
No 289
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=72.25 E-value=3 Score=36.76 Aligned_cols=34 Identities=24% Similarity=0.392 Sum_probs=27.4
Q ss_pred EEEEEecCcCCchhHHHHHHHHHhcccceEEEecchh
Q psy4713 6 LILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAP 42 (103)
Q Consensus 6 lIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~p 42 (103)
-=||+.|..|+||-++|..++..++ +..++++.|
T Consensus 512 ~gvLl~GPPGtGKT~lAkaiA~e~~---~~f~~v~~~ 545 (806)
T 3cf2_A 512 KGVLFYGPPGCGKTLLAKAIANECQ---ANFISIKGP 545 (806)
T ss_dssp SCCEEESSTTSSHHHHHHHHHHTTT---CEEEECCHH
T ss_pred ceEEEecCCCCCchHHHHHHHHHhC---CceEEeccc
Confidence 3478999999999999999999975 455666654
No 290
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=72.10 E-value=3.1 Score=32.75 Aligned_cols=22 Identities=27% Similarity=0.297 Sum_probs=20.0
Q ss_pred EEEEecCcCCchhHHHHHHHHH
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLER 28 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~ 28 (103)
-|||+|.+|+||-=+|..|..+
T Consensus 146 ~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 146 GVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp EEEEEESTTSSHHHHHHHHHHT
T ss_pred EEEEEeCCCCCHHHHHHHHHhc
Confidence 4899999999999999999885
No 291
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=71.90 E-value=2.2 Score=29.98 Aligned_cols=33 Identities=24% Similarity=0.407 Sum_probs=25.5
Q ss_pred EEEEecCcCCchhHHHHHHHHHhccc--ceEEEec
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIGSQ--HCAIIRL 39 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~~~--~~~iv~i 39 (103)
++.|.|.+||||--+++.|...+... +.-.|.+
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~ 38 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKR 38 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEE
Confidence 68899999999999999999887643 2344444
No 292
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=71.50 E-value=5 Score=32.71 Aligned_cols=28 Identities=21% Similarity=0.208 Sum_probs=24.3
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhcc
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIGS 31 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~~ 31 (103)
+..||+|+|..||||=-++..|+..+..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~ 123 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKK 123 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4578888999999999999999988865
No 293
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=71.13 E-value=4.5 Score=29.31 Aligned_cols=31 Identities=23% Similarity=0.285 Sum_probs=23.8
Q ss_pred EEEEecCcCCchhHHHHHHHHHhcc--cceEEE
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIGS--QHCAII 37 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv 37 (103)
||.||||-|+||=-+|-.|+..|.. .++.+|
T Consensus 4 vIavs~KGGvGKTT~a~nLA~~La~~G~rVlli 36 (289)
T 2afh_E 4 QCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIV 36 (289)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEE
Confidence 4445899999999999999988865 344444
No 294
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=70.76 E-value=2.8 Score=30.37 Aligned_cols=24 Identities=25% Similarity=0.468 Sum_probs=21.2
Q ss_pred EEEEecCcCCchhHHHHHHHHHhcc
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIGS 31 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~~ 31 (103)
++||+|-.+|||-=.|+.|... +.
T Consensus 1 ~ilV~Gg~~SGKS~~A~~la~~-~~ 24 (180)
T 1c9k_A 1 MILVTGGARSGKSRHAEALIGD-AP 24 (180)
T ss_dssp CEEEEECTTSSHHHHHHHHHCS-CS
T ss_pred CEEEECCCCCcHHHHHHHHHhc-CC
Confidence 5899999999999999999877 53
No 295
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=70.57 E-value=3.7 Score=29.03 Aligned_cols=25 Identities=20% Similarity=0.190 Sum_probs=22.9
Q ss_pred EEEEEecCcCCchhHHHHHHHHHhc
Q psy4713 6 LILLFSGKRKSGKDFLTDYLLERIG 30 (103)
Q Consensus 6 lIiL~sGKrksGKDy~a~~l~~~l~ 30 (103)
.+|+|.|-.||||--+++.|.+.+.
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 4688999999999999999999985
No 296
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=70.20 E-value=3.9 Score=33.68 Aligned_cols=25 Identities=24% Similarity=0.405 Sum_probs=22.9
Q ss_pred EEEEecCcCCchhHHHHHHHHHhcc
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIGS 31 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~~ 31 (103)
.++|.|.+|+||-.++..+...+..
T Consensus 62 ~vll~Gp~GtGKTtlar~ia~~l~~ 86 (604)
T 3k1j_A 62 HVLLIGEPGTGKSMLGQAMAELLPT 86 (604)
T ss_dssp CEEEECCTTSSHHHHHHHHHHTSCC
T ss_pred EEEEEeCCCCCHHHHHHHHhccCCc
Confidence 6899999999999999999998854
No 297
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=70.09 E-value=13 Score=29.70 Aligned_cols=55 Identities=11% Similarity=0.145 Sum_probs=40.9
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhcc--cceEEEecchhhH----HHHHHHcCccHHHh
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRLSAPIK----SHWAKQNGLEMDKL 58 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~iS~piK----~~yA~~~glDl~~L 58 (103)
|--+++|+|.+|+||=-++-.++..... ..+.++++-.|-. |..+...|.|+++|
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlEms~~ql~~R~~~~~~~i~~~~l 256 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEMGKKENIKRLIVTAGSINAQKI 256 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSSSCTTHHHHHHHHHHSCCCHHHH
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECCCCHHHHHHHHHHHHcCCCHHHH
Confidence 4457899999999998777666655432 5688888876644 44566789999998
No 298
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=70.09 E-value=3.2 Score=33.06 Aligned_cols=34 Identities=24% Similarity=0.280 Sum_probs=27.9
Q ss_pred EEEEEecCcCCchhHHHHHHHHHhcc--cceEEEec
Q psy4713 6 LILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRL 39 (103)
Q Consensus 6 lIiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~i 39 (103)
.|+++|||-|+||=.+|-.++..+.. .++-+|..
T Consensus 3 ~i~~~~gkGG~GKTt~a~~la~~la~~g~~vllvd~ 38 (374)
T 3igf_A 3 LILTFLGKSGVARTKIAIAAAKLLASQGKRVLLAGL 38 (374)
T ss_dssp EEEEEECSBHHHHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCeEEEeC
Confidence 47889999999999999999888765 45666665
No 299
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=69.59 E-value=5.3 Score=28.91 Aligned_cols=35 Identities=17% Similarity=0.167 Sum_probs=26.8
Q ss_pred CeEEEEEe--cCcCCchhHHHHHHHHHhcc--cceEEEe
Q psy4713 4 PKLILLFS--GKRKSGKDFLTDYLLERIGS--QHCAIIR 38 (103)
Q Consensus 4 pklIiL~s--GKrksGKDy~a~~l~~~l~~--~~~~iv~ 38 (103)
++.|.+++ +|-|+||=.+|-.|+..|.. .++.+|-
T Consensus 34 ~~~i~v~~~s~KGGvGKTT~a~nLA~~la~~G~rVlliD 72 (298)
T 2oze_A 34 NEAIVILNNYFKGGVGKSKLSTMFAYLTDKLNLKVLMID 72 (298)
T ss_dssp CSCEEEEECCSSSSSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CcEEEEEeccCCCCchHHHHHHHHHHHHHhCCCeEEEEe
Confidence 45666666 89999999999999988865 3455543
No 300
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=69.36 E-value=11 Score=29.72 Aligned_cols=46 Identities=20% Similarity=0.276 Sum_probs=35.1
Q ss_pred EEEEecCcCCchhHHHHHHHHHhcc---cceEEEecchhhHHHHHHHcC
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIGS---QHCAIIRLSAPIKSHWAKQNG 52 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~~---~~~~iv~iS~piK~~yA~~~g 52 (103)
.++|+|..|+||=+++..+...+.. ..+.++..++..-++..+..|
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~T~~Aa~~l~~~~~ 95 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEALISTGETGIILAAPTHAAKKILSKLSG 95 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHHHS
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecCcHHHHHHHHhhhc
Confidence 8899999999999999999888855 246667677666666665443
No 301
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=69.08 E-value=3.6 Score=31.70 Aligned_cols=26 Identities=12% Similarity=0.287 Sum_probs=23.3
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHh
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERI 29 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l 29 (103)
++.-|+|.|..++||-+++..|++.+
T Consensus 103 ~~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 103 KRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHhhh
Confidence 46779999999999999999999864
No 302
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=68.92 E-value=7.2 Score=28.48 Aligned_cols=35 Identities=20% Similarity=0.190 Sum_probs=25.7
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhcc--cceEEEec
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRL 39 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~i 39 (103)
+++|.+ +||-|+||=-+|-.|+..|.+ .++.+|-.
T Consensus 41 ~~vI~v-~~KGGvGKTT~a~nLA~~La~~G~~VlliD~ 77 (307)
T 3end_A 41 AKVFAV-YGKGGIGKSTTSSNLSAAFSILGKRVLQIGC 77 (307)
T ss_dssp CEEEEE-ECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred ceEEEE-ECCCCccHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 444544 499999999999999888865 45555543
No 303
>3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN; glycinamide ribonucleotide transformylase, structure; 1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A*
Probab=68.88 E-value=9.5 Score=28.34 Aligned_cols=69 Identities=17% Similarity=0.220 Sum_probs=40.7
Q ss_pred CCeEEEEEecCcCCchhHHHHHHHHHhcc----cceEEEecchhh--HHHHHHHcCccHHHh-cCCCCcHHHhHHHHHHH
Q psy4713 3 QPKLILLFSGKRKSGKDFLTDYLLERIGS----QHCAIIRLSAPI--KSHWAKQNGLEMDKL-LGATKYKEKYRAEMITW 75 (103)
Q Consensus 3 ~pklIiL~sGKrksGKDy~a~~l~~~l~~----~~~~iv~iS~pi--K~~yA~~~glDl~~L-L~d~~YKE~~R~~mi~w 75 (103)
.+|++||+||- | -+...|...+.+ ..+.| +|+|- -.++|+++|+..-.. +.+.+-||.|=++++++
T Consensus 12 ~~ri~vl~SG~---g--snl~all~~~~~~~~~eI~~V--is~~~a~~~~~A~~~gIp~~~~~~~~~~~r~~~d~~~~~~ 84 (215)
T 3da8_A 12 PARLVVLASGT---G--SLLRSLLDAAVGDYPARVVAV--GVDRECRAAEIAAEASVPVFTVRLADHPSRDAWDVAITAA 84 (215)
T ss_dssp SEEEEEEESSC---C--HHHHHHHHHSSTTCSEEEEEE--EESSCCHHHHHHHHTTCCEEECCGGGSSSHHHHHHHHHHH
T ss_pred CcEEEEEEeCC---h--HHHHHHHHHHhccCCCeEEEE--EeCCchHHHHHHHHcCCCEEEeCcccccchhhhhHHHHHH
Confidence 45889999984 2 244455554422 22333 45442 257899999986655 11233477777777766
Q ss_pred HHH
Q psy4713 76 SEA 78 (103)
Q Consensus 76 ge~ 78 (103)
-++
T Consensus 85 l~~ 87 (215)
T 3da8_A 85 TAA 87 (215)
T ss_dssp HHT
T ss_pred HHh
Confidence 543
No 304
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=68.85 E-value=3.8 Score=31.60 Aligned_cols=28 Identities=21% Similarity=0.189 Sum_probs=17.8
Q ss_pred CCeEEEEEecCcCCchhHHHHHHHHHhc
Q psy4713 3 QPKLILLFSGKRKSGKDFLTDYLLERIG 30 (103)
Q Consensus 3 ~pklIiL~sGKrksGKDy~a~~l~~~l~ 30 (103)
++++|.++|||-|+||=-+|-.|+..|.
T Consensus 110 ~~~vIav~s~KGGvGKTT~a~nLA~~LA 137 (403)
T 3ez9_A 110 SPYVIFVVNLKGGVSKTVSTVTLAHALR 137 (403)
T ss_dssp SCEEEEECCC--------CHHHHHHHHH
T ss_pred CceEEEEEcCCCCchHHHHHHHHHHHHH
Confidence 5789999999999999999999998885
No 305
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=68.59 E-value=5 Score=32.32 Aligned_cols=52 Identities=23% Similarity=0.377 Sum_probs=33.6
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhcc---cceEEEecc----hhhH--HHHHHHcCccH
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIGS---QHCAIIRLS----APIK--SHWAKQNGLEM 55 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~~---~~~~iv~iS----~piK--~~yA~~~glDl 55 (103)
+..+|+|+|+.|+||=-++..|+..+.. .++.++..- +++. +.++...|+|+
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v 159 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDF 159 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeE
Confidence 3456667799999999999999988864 344444332 2222 13566666653
No 306
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=68.32 E-value=3.7 Score=31.10 Aligned_cols=27 Identities=26% Similarity=0.451 Sum_probs=23.6
Q ss_pred eEEEEEecCcCCchhHHHHHHHHHhcc
Q psy4713 5 KLILLFSGKRKSGKDFLTDYLLERIGS 31 (103)
Q Consensus 5 klIiL~sGKrksGKDy~a~~l~~~l~~ 31 (103)
+..+||.|..|+||-+.+..+++.+..
T Consensus 58 kn~ili~GPPGtGKTt~a~ala~~l~g 84 (212)
T 1tue_A 58 KNCLVFCGPANTGKSYFGMSFIHFIQG 84 (212)
T ss_dssp CSEEEEESCGGGCHHHHHHHHHHHHTC
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 445899999999999999999998853
No 307
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=68.20 E-value=4.6 Score=26.86 Aligned_cols=24 Identities=29% Similarity=0.387 Sum_probs=20.9
Q ss_pred EEEEecCcCCchhHHHHHHHHHhc
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIG 30 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~ 30 (103)
+.+|+|++||||==+.+.+.-.++
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 789999999999999999876654
No 308
>3gn3_A Putative protein-disulfide isomerase; MCSG, PSI, structural GEN protein structure initiative, midwest center for structural genomics; 2.50A {Pseudomonas syringae PV}
Probab=66.95 E-value=4.2 Score=28.58 Aligned_cols=48 Identities=8% Similarity=0.082 Sum_probs=38.9
Q ss_pred hhHHHHHHHcCccHHHhcCCCCcHHHhHHHHHHHHHHHhccChhhhHH
Q psy4713 42 PIKSHWAKQNGLEMDKLLGATKYKEKYRAEMITWSEAERRKDNGCFIR 89 (103)
Q Consensus 42 piK~~yA~~~glDl~~LL~d~~YKE~~R~~mi~wge~~R~~D~g~Fcr 89 (103)
.+-...|+..|+|.+++|.+.++++..|.+.-..-+-+-+--|.||-.
T Consensus 114 ~~l~~~a~~~Gld~~~~l~~~~~~~~v~~~~~~a~~~GV~gtPtf~in 161 (182)
T 3gn3_A 114 DIIARIERYSGLALAEAFANPELEHAVKWHTKYARQNGIHVSPTFMIN 161 (182)
T ss_dssp HHHHHHHHHHTCCCHHHHHCGGGHHHHHHHHHHHHHHTCCSSSEEEET
T ss_pred HHHHHHHHHhCCCHHHHhcChHHHHHHHHHHHHHHHCCCCccCEEEEC
Confidence 355678999999999999999999999988877777667777777643
No 309
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=65.85 E-value=6.1 Score=26.72 Aligned_cols=20 Identities=20% Similarity=0.320 Sum_probs=17.2
Q ss_pred eEEEEEecCcCCchhHHHHH
Q psy4713 5 KLILLFSGKRKSGKDFLTDY 24 (103)
Q Consensus 5 klIiL~sGKrksGKDy~a~~ 24 (103)
-=|+.+.|.+||||--++..
T Consensus 9 gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHH
Confidence 34788999999999999884
No 310
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=65.84 E-value=5.3 Score=27.65 Aligned_cols=24 Identities=33% Similarity=0.505 Sum_probs=21.3
Q ss_pred EEEEEecCcCCchhHHHHHHHHHh
Q psy4713 6 LILLFSGKRKSGKDFLTDYLLERI 29 (103)
Q Consensus 6 lIiL~sGKrksGKDy~a~~l~~~l 29 (103)
-|+.|.|.+||||-=+.+.|...+
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 478899999999999999998876
No 311
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=65.84 E-value=14 Score=29.78 Aligned_cols=54 Identities=19% Similarity=0.239 Sum_probs=34.1
Q ss_pred EEEEEecCcCCchhHHHHHH--HHHhc-ccceEEEecchhhH--HHHHHHcCccHHHhc
Q psy4713 6 LILLFSGKRKSGKDFLTDYL--LERIG-SQHCAIIRLSAPIK--SHWAKQNGLEMDKLL 59 (103)
Q Consensus 6 lIiL~sGKrksGKDy~a~~l--~~~l~-~~~~~iv~iS~piK--~~yA~~~glDl~~LL 59 (103)
-+++|.|.+||||-=++..+ .-.+. ...+..+...++-. .+.++..|.+++...
T Consensus 40 e~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~ 98 (525)
T 1tf7_A 40 RSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLAKLV 98 (525)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGGGTCCHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCChHHhh
Confidence 47899999999999999884 33332 12233333333221 345667899988754
No 312
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=65.60 E-value=13 Score=30.85 Aligned_cols=55 Identities=16% Similarity=0.270 Sum_probs=38.3
Q ss_pred EEEEecCcCCchhHHHHHHHHHhcc--cceEEEecchhhHHHHHHHcCc---cHHHhcCC
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRLSAPIKSHWAKQNGL---EMDKLLGA 61 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~iS~piK~~yA~~~gl---Dl~~LL~d 61 (103)
+++|+|-.|+||=+++..+...+.. ..+.++..++..-....+..|. .+.+||.-
T Consensus 206 ~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT~~Aa~~L~e~~~~~a~Tih~ll~~ 265 (574)
T 3e1s_A 206 LVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAARRLGEVTGRTASTVHRLLGY 265 (574)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHTSCEEEHHHHTTE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCcHHHHHHhHhhhcccHHHHHHHHcC
Confidence 6789999999999999999887765 4555555555555555555543 45566643
No 313
>3k32_A Uncharacterized protein MJ0690; predicted subunit of tRNA methyltransferase, methanocaldococcus jannaschii DSM , PSI- 2; 2.50A {Methanocaldococcus jannaschii}
Probab=65.57 E-value=16 Score=25.78 Aligned_cols=58 Identities=26% Similarity=0.330 Sum_probs=34.6
Q ss_pred CCCCeEEEEEecCcCCchhHHHHHH-HHHhcccceEEEecchh------hHHHHHHHcCccHHHhcCCCC
Q psy4713 1 MTQPKLILLFSGKRKSGKDFLTDYL-LERIGSQHCAIIRLSAP------IKSHWAKQNGLEMDKLLGATK 63 (103)
Q Consensus 1 ~~~pklIiL~sGKrksGKDy~a~~l-~~~l~~~~~~iv~iS~p------iK~~yA~~~glDl~~LL~d~~ 63 (103)
|...+++|++|| |+|=.+-.+ ....+ ..+.++.+... .=+++|+..|+++.-+-.+..
T Consensus 4 m~~~kv~v~~SG----G~DS~~ll~ll~~~g-~~v~~~~v~~~~~~~~~~~~~~a~~lgi~~~~~~~~~~ 68 (203)
T 3k32_A 4 MKLMDVHVLFSG----GKDSSLSAVILKKLG-YNPHLITINFGVIPSYKLAEETAKILGFKHKVITLDRK 68 (203)
T ss_dssp --CEEEEEECCC----SHHHHHHHHHHHHTT-EEEEEEEEECSSSCTTHHHHHHHHHHTCEEEEEECCTH
T ss_pred ccCCeEEEEEEC----cHHHHHHHHHHHHcC-CCeEEEEEeCCCchHHHHHHHHHHHhCCCEEEEECCHH
Confidence 556799999999 999655432 22333 34455544332 235678888987765554443
No 314
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=65.55 E-value=10 Score=30.21 Aligned_cols=55 Identities=24% Similarity=0.247 Sum_probs=35.4
Q ss_pred eEEEEEecCcCCchhHHHHHHHHH-hc-------ccceEEEecchh---h-HHHHHHHcCccHHHhc
Q psy4713 5 KLILLFSGKRKSGKDFLTDYLLER-IG-------SQHCAIIRLSAP---I-KSHWAKQNGLEMDKLL 59 (103)
Q Consensus 5 klIiL~sGKrksGKDy~a~~l~~~-l~-------~~~~~iv~iS~p---i-K~~yA~~~glDl~~LL 59 (103)
--|++|.|.+||||=-++..+.-. +. ...+..+...++ . -+++++..|++.+.++
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vl 244 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDAL 244 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHh
Confidence 347899999999999988866422 21 122444443332 1 2457889999988654
No 315
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=64.78 E-value=19 Score=27.83 Aligned_cols=70 Identities=21% Similarity=0.244 Sum_probs=43.7
Q ss_pred CCeEEEEEecCcCCchhHHHHHHHHHh--cc---cceEEEecchhhHHHHHHHcCccHHHhcCCCCcHHHhHHHHHHHHH
Q psy4713 3 QPKLILLFSGKRKSGKDFLTDYLLERI--GS---QHCAIIRLSAPIKSHWAKQNGLEMDKLLGATKYKEKYRAEMITWSE 77 (103)
Q Consensus 3 ~pklIiL~sGKrksGKDy~a~~l~~~l--~~---~~~~iv~iS~piK~~yA~~~glDl~~LL~d~~YKE~~R~~mi~wge 77 (103)
.+|++||+||. | -|...|..+. ++ ..+.|+|=-...+ ++|+++|+..-.+-...+-|+.+=+++.++-+
T Consensus 95 ~~ri~vl~Sg~---g--~~l~~ll~~~~~g~l~~~i~~Visn~~~~~-~~A~~~gIp~~~~~~~~~~r~~~~~~~~~~l~ 168 (292)
T 3lou_A 95 RPKVLIMVSKL---E--HCLADLLFRWKMGELKMDIVGIVSNHPDFA-PLAAQHGLPFRHFPITADTKAQQEAQWLDVFE 168 (292)
T ss_dssp CCEEEEEECSC---C--HHHHHHHHHHHHTSSCCEEEEEEESSSTTH-HHHHHTTCCEEECCCCSSCHHHHHHHHHHHHH
T ss_pred CCEEEEEEcCC---C--cCHHHHHHHHHcCCCCcEEEEEEeCcHHHH-HHHHHcCCCEEEeCCCcCCHHHHHHHHHHHHH
Confidence 46888999875 3 4666665554 33 3344555333344 57999999876543333457777777777765
Q ss_pred H
Q psy4713 78 A 78 (103)
Q Consensus 78 ~ 78 (103)
+
T Consensus 169 ~ 169 (292)
T 3lou_A 169 T 169 (292)
T ss_dssp H
T ss_pred H
Confidence 4
No 316
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=64.48 E-value=8.2 Score=31.62 Aligned_cols=25 Identities=20% Similarity=0.231 Sum_probs=22.5
Q ss_pred EEEEecCcCCchhHHHHHHHHHhcc
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIGS 31 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~~ 31 (103)
-||+.|.+|+||=.++..++..++.
T Consensus 52 ~iLl~GppGtGKT~lar~lA~~l~~ 76 (444)
T 1g41_A 52 NILMIGPTGVGKTEIARRLAKLANA 76 (444)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred eEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 4788999999999999999999864
No 317
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=63.72 E-value=4 Score=32.14 Aligned_cols=22 Identities=23% Similarity=0.306 Sum_probs=19.1
Q ss_pred EEEEecCcCCchhHHHHHHHHH
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLER 28 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~ 28 (103)
-|||+|++|+||-=+|-.|..+
T Consensus 149 gvli~G~sG~GKStlal~l~~~ 170 (312)
T 1knx_A 149 GVLLTGRSGIGKSECALDLINK 170 (312)
T ss_dssp EEEEEESSSSSHHHHHHHHHTT
T ss_pred EEEEEcCCCCCHHHHHHHHHHc
Confidence 4899999999998888888775
No 318
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=63.69 E-value=6.2 Score=31.38 Aligned_cols=54 Identities=6% Similarity=0.091 Sum_probs=40.0
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhcc---cceEEEecchhhH----HHHHHHcCccHHH
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIGS---QHCAIIRLSAPIK----SHWAKQNGLEMDK 57 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~~---~~~~iv~iS~piK----~~yA~~~glDl~~ 57 (103)
|--+++|+|..|+||=-++-.++..+.. ..+..+++-.+.. +..+...|.|+.+
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E~s~~~l~~r~~~~~~~~~~~~ 301 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLEESVEETAEDLIGLHNRVRLRQ 301 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESSSCHHHHHHHHHHHHTTSCCTT
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEeccCCHHHHHHHHHHHHcCCChhh
Confidence 3457899999999999888777766543 4788888877654 4456677888764
No 319
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=63.57 E-value=7 Score=29.41 Aligned_cols=33 Identities=15% Similarity=0.139 Sum_probs=24.4
Q ss_pred EEEEEecCcCCchhHHHHHHHHHhcc--cceEEEe
Q psy4713 6 LILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIR 38 (103)
Q Consensus 6 lIiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~ 38 (103)
-|+.|+|+.||||--++..|...+.. .++.++.
T Consensus 99 ~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~ 133 (295)
T 1ls1_A 99 NLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVA 133 (295)
T ss_dssp EEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEec
Confidence 45666699999999999999888764 3444443
No 320
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=63.55 E-value=13 Score=27.27 Aligned_cols=24 Identities=25% Similarity=0.349 Sum_probs=21.4
Q ss_pred EEEEEecCcCCchhHHHHHHHHHhc
Q psy4713 6 LILLFSGKRKSGKDFLTDYLLERIG 30 (103)
Q Consensus 6 lIiL~sGKrksGKDy~a~~l~~~l~ 30 (103)
.-|-+||--||||-.++..|.+ +|
T Consensus 10 ~~iglTGgigsGKStv~~~l~~-~g 33 (210)
T 4i1u_A 10 YAIGLTGGIGSGKTTVADLFAA-RG 33 (210)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH-TT
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CC
Confidence 4678999999999999999988 65
No 321
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=63.50 E-value=14 Score=25.00 Aligned_cols=33 Identities=27% Similarity=0.425 Sum_probs=24.5
Q ss_pred eEEEEEecCcCCchhHHHHHHHHHhcc-cceEEE
Q psy4713 5 KLILLFSGKRKSGKDFLTDYLLERIGS-QHCAII 37 (103)
Q Consensus 5 klIiL~sGKrksGKDy~a~~l~~~l~~-~~~~iv 37 (103)
..+|+|+|..+|||==+++.|...+.. .++.++
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i 63 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAM 63 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEE
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEE
Confidence 357888999999999888888877643 234444
No 322
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=63.02 E-value=9.6 Score=30.90 Aligned_cols=50 Identities=14% Similarity=0.183 Sum_probs=32.7
Q ss_pred eEEEEEecCcCCchhHHHHHHHHHhcc--cceEEEec--chh--hH--HHHHHHcCcc
Q psy4713 5 KLILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRL--SAP--IK--SHWAKQNGLE 54 (103)
Q Consensus 5 klIiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~i--S~p--iK--~~yA~~~glD 54 (103)
.-||+|+|+.||||--++..|...+.. .++.++.. ..| .. +.|+...|++
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~ 155 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVP 155 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCCcc
Confidence 346667799999999999999988865 34555442 112 11 2456666665
No 323
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=62.96 E-value=6.2 Score=31.79 Aligned_cols=34 Identities=26% Similarity=0.296 Sum_probs=26.5
Q ss_pred eEEEEEecCcCCchhHHHHHHHHHhcc--cceEEEe
Q psy4713 5 KLILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIR 38 (103)
Q Consensus 5 klIiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~ 38 (103)
..+|+|+|..||||=-++..|...+.. .++.++.
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~ 134 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIA 134 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 457888999999999999999988754 3444443
No 324
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=62.90 E-value=11 Score=28.89 Aligned_cols=28 Identities=18% Similarity=0.310 Sum_probs=23.7
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhcc
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIGS 31 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~~ 31 (103)
+.-||+|+|..||||==++..|+..+..
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~ 130 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVD 130 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHh
Confidence 4468889999999999999998888754
No 325
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=62.74 E-value=3.6 Score=33.93 Aligned_cols=24 Identities=13% Similarity=0.164 Sum_probs=21.8
Q ss_pred EEEecCcCCchhHHHHHHHHHhcc
Q psy4713 8 LLFSGKRKSGKDFLTDYLLERIGS 31 (103)
Q Consensus 8 iL~sGKrksGKDy~a~~l~~~l~~ 31 (103)
||+.|.+|+||-.+|..++..++.
T Consensus 44 VLL~GpPGtGKT~LAraLa~~l~~ 67 (500)
T 3nbx_X 44 VFLLGPPGIAKSLIARRLKFAFQN 67 (500)
T ss_dssp EEEECCSSSSHHHHHHHGGGGBSS
T ss_pred eEeecCchHHHHHHHHHHHHHHhh
Confidence 788999999999999999998854
No 326
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=62.26 E-value=18 Score=29.11 Aligned_cols=55 Identities=16% Similarity=0.307 Sum_probs=35.1
Q ss_pred eEEEEEecCcCCchhHHHHHHHHHhcc--cceEEEecchhhHHHH--HHHcCccHHHhc
Q psy4713 5 KLILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRLSAPIKSHW--AKQNGLEMDKLL 59 (103)
Q Consensus 5 klIiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~iS~piK~~y--A~~~glDl~~LL 59 (103)
--|++|+|.+||||-=++..+...+.. ..+..+..-+|..+-. +...|+|++++.
T Consensus 281 G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~~~l~~~~~~~g~~~~~~~ 339 (525)
T 1tf7_A 281 DSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEEME 339 (525)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHHHHHHHHHTTSCCHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCCHHHHH
Confidence 348899999999999998888766543 2344455545533222 334577765543
No 327
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=62.25 E-value=7.2 Score=29.75 Aligned_cols=24 Identities=29% Similarity=0.257 Sum_probs=20.5
Q ss_pred EEEecCcCCchhHHHHHHHHHhcc
Q psy4713 8 LLFSGKRKSGKDFLTDYLLERIGS 31 (103)
Q Consensus 8 iL~sGKrksGKDy~a~~l~~~l~~ 31 (103)
++|.|.+||||-.++..+...+-.
T Consensus 38 ~~i~G~~G~GKs~~~~~~~~~~~~ 61 (392)
T 4ag6_A 38 WTILAKPGAGKSFTAKMLLLREYM 61 (392)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHT
T ss_pred eEEEcCCCCCHHHHHHHHHHHHHH
Confidence 578899999999999998877654
No 328
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=62.24 E-value=6.1 Score=26.79 Aligned_cols=55 Identities=22% Similarity=0.231 Sum_probs=35.1
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhcc------cceEEEecchh------hHHHHHHHcCccHHHh
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIGS------QHCAIIRLSAP------IKSHWAKQNGLEMDKL 58 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~~------~~~~iv~iS~p------iK~~yA~~~glDl~~L 58 (103)
+-=|+.|.|.+||||=-++..+...+.. ..-.++.+++. --...++..|++.+..
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~ 90 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEV 90 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTSCHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHHHHHHHHHcCCCHHHH
Confidence 3457899999999999999998774322 12234444332 1135667788887643
No 329
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=62.16 E-value=4.2 Score=33.98 Aligned_cols=28 Identities=25% Similarity=0.405 Sum_probs=24.9
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhcc
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIGS 31 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~~ 31 (103)
+--+|.|+|.+||||--++..|...+..
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L~~ 395 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARLME 395 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHHHT
T ss_pred cceEEEEECCCCChHHHHHHHHHHhhcc
Confidence 4468899999999999999999999874
No 330
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=62.14 E-value=4 Score=27.38 Aligned_cols=24 Identities=21% Similarity=0.386 Sum_probs=17.9
Q ss_pred CCeEEEEEecCcCCchhHHHHHHH
Q psy4713 3 QPKLILLFSGKRKSGKDFLTDYLL 26 (103)
Q Consensus 3 ~pklIiL~sGKrksGKDy~a~~l~ 26 (103)
.+..+|+|.|.++|||==+.+.|.
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~ 47 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLT 47 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHh
Confidence 356789999999999965555443
No 331
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=61.91 E-value=24 Score=27.49 Aligned_cols=70 Identities=16% Similarity=0.133 Sum_probs=43.5
Q ss_pred CCeEEEEEecCcCCchhHHHHHHHHHh--cc---cceEEEecchhhHHHHHHHcCccHHHhcCCCCcHHHhHHHHHHHHH
Q psy4713 3 QPKLILLFSGKRKSGKDFLTDYLLERI--GS---QHCAIIRLSAPIKSHWAKQNGLEMDKLLGATKYKEKYRAEMITWSE 77 (103)
Q Consensus 3 ~pklIiL~sGKrksGKDy~a~~l~~~l--~~---~~~~iv~iS~piK~~yA~~~glDl~~LL~d~~YKE~~R~~mi~wge 77 (103)
.+|++||+||. | -|...|..+. ++ ..+.|+|=-...+ ++|+++|+.+-.+-....-|+.+=++++++-+
T Consensus 105 ~~ri~vl~Sg~---g--~nl~~ll~~~~~g~l~~~I~~Visn~~~~~-~~A~~~gIp~~~~~~~~~~r~~~~~~~~~~l~ 178 (302)
T 3o1l_A 105 KKRVVLMASRE---S--HCLADLLHRWHSDELDCDIACVISNHQDLR-SMVEWHDIPYYHVPVDPKDKEPAFAEVSRLVG 178 (302)
T ss_dssp CCEEEEEECSC---C--HHHHHHHHHHHTTCSCSEEEEEEESSSTTH-HHHHTTTCCEEECCCCSSCCHHHHHHHHHHHH
T ss_pred CcEEEEEEeCC---c--hhHHHHHHHHHCCCCCcEEEEEEECcHHHH-HHHHHcCCCEEEcCCCcCCHHHHHHHHHHHHH
Confidence 46889999886 3 3555555543 33 3344554333344 68999999876653334557777777777765
Q ss_pred H
Q psy4713 78 A 78 (103)
Q Consensus 78 ~ 78 (103)
+
T Consensus 179 ~ 179 (302)
T 3o1l_A 179 H 179 (302)
T ss_dssp H
T ss_pred H
Confidence 4
No 332
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=61.43 E-value=7.1 Score=30.98 Aligned_cols=27 Identities=44% Similarity=0.507 Sum_probs=23.4
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhc
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIG 30 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~ 30 (103)
+.-+++|.|.+||||--++..|...++
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~~~~ 194 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLELCG 194 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 455888999999999999999998764
No 333
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=61.36 E-value=8.9 Score=29.43 Aligned_cols=34 Identities=15% Similarity=0.128 Sum_probs=26.3
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhcc--cceEEE
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIGS--QHCAII 37 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv 37 (103)
+.-||+|+|..||||=-++..|+..+.. .++.++
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVlli 139 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIA 139 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 4557888899999999999999888765 344444
No 334
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=61.12 E-value=27 Score=26.81 Aligned_cols=70 Identities=17% Similarity=0.192 Sum_probs=43.3
Q ss_pred CCeEEEEEecCcCCchhHHHHHHHHHh--ccc---ceEEEecchhhHHHHHHHcCccHHHhcCCCCcHHHhHHHHHHHHH
Q psy4713 3 QPKLILLFSGKRKSGKDFLTDYLLERI--GSQ---HCAIIRLSAPIKSHWAKQNGLEMDKLLGATKYKEKYRAEMITWSE 77 (103)
Q Consensus 3 ~pklIiL~sGKrksGKDy~a~~l~~~l--~~~---~~~iv~iS~piK~~yA~~~glDl~~LL~d~~YKE~~R~~mi~wge 77 (103)
.+|++||+||. | -|...|..+. ++. .+.|+|=-...+ ++|+++|+..-.+-...+-|+.+=+++.++-+
T Consensus 90 ~~ri~vl~Sg~---g--~~l~~ll~~~~~g~l~~~i~~Visn~~~~~-~~A~~~gIp~~~~~~~~~~r~~~~~~~~~~l~ 163 (286)
T 3n0v_A 90 RPKVVIMVSKA---D--HCLNDLLYRQRIGQLGMDVVAVVSNHPDLE-PLAHWHKIPYYHFALDPKDKPGQERKVLQVIE 163 (286)
T ss_dssp CCEEEEEESSC---C--HHHHHHHHHHHTTSSCCEEEEEEESSSTTH-HHHHHTTCCEEECCCBTTBHHHHHHHHHHHHH
T ss_pred CcEEEEEEeCC---C--CCHHHHHHHHHCCCCCcEEEEEEeCcHHHH-HHHHHcCCCEEEeCCCcCCHHHHHHHHHHHHH
Confidence 46889999886 3 5666666654 332 334444333344 57999999865543223457777777777765
Q ss_pred H
Q psy4713 78 A 78 (103)
Q Consensus 78 ~ 78 (103)
+
T Consensus 164 ~ 164 (286)
T 3n0v_A 164 E 164 (286)
T ss_dssp H
T ss_pred h
Confidence 5
No 335
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=61.10 E-value=7.6 Score=27.43 Aligned_cols=37 Identities=22% Similarity=0.330 Sum_probs=29.0
Q ss_pred EEEEEecCcCCchhHHHHHHHHHhcccceEEEecchh
Q psy4713 6 LILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAP 42 (103)
Q Consensus 6 lIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~p 42 (103)
+.|.|-|==||||-=.++.|++.|.+....++-...|
T Consensus 1 mfI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~treP 37 (197)
T 3hjn_A 1 MFITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKREP 37 (197)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECC
Confidence 3578999999999999999999997754455544444
No 336
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=60.56 E-value=17 Score=27.98 Aligned_cols=56 Identities=23% Similarity=0.237 Sum_probs=36.9
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhcc--------cceEEEecchhh--H--HHHHHHcCccHHHhc
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIGS--------QHCAIIRLSAPI--K--SHWAKQNGLEMDKLL 59 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~~--------~~~~iv~iS~pi--K--~~yA~~~glDl~~LL 59 (103)
+--|++|.|.+||||==++..+.-.+.. ..|..+.-.++. + .++++..|++.+.++
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i~~i~q~~~~~~~~v~ 197 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVL 197 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHHHHHHHTTTCCHHHHG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHHHHHHHHcCCCHHHHh
Confidence 3458999999999999999888876521 122333332221 1 237788899887665
No 337
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=60.53 E-value=9.4 Score=28.94 Aligned_cols=50 Identities=14% Similarity=0.241 Sum_probs=32.3
Q ss_pred eEEEEEecCcCCchhHHHHHHHHHhcc--cceEEEecc----hhhH--HHHHHHcCcc
Q psy4713 5 KLILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRLS----APIK--SHWAKQNGLE 54 (103)
Q Consensus 5 klIiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~iS----~piK--~~yA~~~glD 54 (103)
.-||+|+|+.|+||=-++..|+..+.. .++.++... .... +.|+...|++
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~ 155 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVP 155 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeE
Confidence 346667799999999999999888754 345554432 1111 2356666665
No 338
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=60.48 E-value=4.5 Score=31.30 Aligned_cols=38 Identities=21% Similarity=0.326 Sum_probs=28.2
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchh
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAP 42 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~p 42 (103)
+.-+++|+|.+||||-=+.+.|...+.. ...+|.|-++
T Consensus 174 ~G~~i~ivG~sGsGKSTll~~l~~~~~~-~~g~I~ie~~ 211 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLMKALMQEIPF-DQRLITIEDV 211 (361)
T ss_dssp TTCCEEEEESSSSCHHHHHHHHHTTSCT-TSCEEEEESS
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhcCCC-CceEEEECCc
Confidence 3457899999999999999988877643 3455556554
No 339
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=59.93 E-value=11 Score=25.33 Aligned_cols=28 Identities=18% Similarity=0.199 Sum_probs=23.8
Q ss_pred CCCCeEEEEEecCcCCchhHHHHHHHHH
Q psy4713 1 MTQPKLILLFSGKRKSGKDFLTDYLLER 28 (103)
Q Consensus 1 ~~~pklIiL~sGKrksGKDy~a~~l~~~ 28 (103)
|.+..+-|+|-|.++|||==+.+.+...
T Consensus 1 m~~~~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 1 MYDYLFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp CCSEEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred CCcceEEEEEECcCCCCHHHHHHHHhcC
Confidence 6777889999999999998888777654
No 340
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=59.62 E-value=12 Score=23.76 Aligned_cols=26 Identities=23% Similarity=0.238 Sum_probs=21.2
Q ss_pred CCeEEEEEecCcCCchhHHHHHHHHH
Q psy4713 3 QPKLILLFSGKRKSGKDFLTDYLLER 28 (103)
Q Consensus 3 ~pklIiL~sGKrksGKDy~a~~l~~~ 28 (103)
.+.+-|+|.|..+|||==+.+.+...
T Consensus 7 ~~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 7 SETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp SCEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 35578999999999998888877654
No 341
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=59.30 E-value=9.5 Score=24.42 Aligned_cols=27 Identities=22% Similarity=0.306 Sum_probs=21.4
Q ss_pred CCCCeEEEEEecCcCCchhHHHHHHHH
Q psy4713 1 MTQPKLILLFSGKRKSGKDFLTDYLLE 27 (103)
Q Consensus 1 ~~~pklIiL~sGKrksGKDy~a~~l~~ 27 (103)
|.++..-|+|.|..+|||==+.+.+..
T Consensus 4 ~~~~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 4 MVERPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp TCCCCCEEEEESCTTTTHHHHHHHHHT
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHhC
Confidence 345677889999999999877777753
No 342
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=59.15 E-value=5.8 Score=31.74 Aligned_cols=33 Identities=27% Similarity=0.329 Sum_probs=25.2
Q ss_pred EEEEEecCcCCchhHHHHHHHHHhcccceEEEec
Q psy4713 6 LILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRL 39 (103)
Q Consensus 6 lIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~i 39 (103)
-+++|+|..|+||-.++..+....+ ..|.-+++
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~~G-~~VlyIs~ 156 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEALG-GKDKYATV 156 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHHHH-TTSCCEEE
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhCC-CCEEEEEe
Confidence 4578999999999999999987733 34455555
No 343
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=58.91 E-value=13 Score=23.43 Aligned_cols=26 Identities=19% Similarity=0.194 Sum_probs=21.2
Q ss_pred CCCeEEEEEecCcCCchhHHHHHHHH
Q psy4713 2 TQPKLILLFSGKRKSGKDFLTDYLLE 27 (103)
Q Consensus 2 ~~pklIiL~sGKrksGKDy~a~~l~~ 27 (103)
+++.+-|+|.|..++||==+.+.+..
T Consensus 4 ~~~~~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 4 MTREMRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhc
Confidence 45678899999999999888777753
No 344
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=58.68 E-value=6.8 Score=29.78 Aligned_cols=24 Identities=21% Similarity=0.164 Sum_probs=21.4
Q ss_pred EEEEEecCcCCchhHHHHHHHHHh
Q psy4713 6 LILLFSGKRKSGKDFLTDYLLERI 29 (103)
Q Consensus 6 lIiL~sGKrksGKDy~a~~l~~~l 29 (103)
-.+||+|..|+||.-++..+++.+
T Consensus 19 ~~~Lf~Gp~G~GKtt~a~~la~~~ 42 (305)
T 2gno_A 19 ISILINGEDLSYPREVSLELPEYV 42 (305)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHhC
Confidence 478999999999999999998764
No 345
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=57.60 E-value=6.9 Score=30.03 Aligned_cols=34 Identities=18% Similarity=0.266 Sum_probs=27.9
Q ss_pred eEEEEEecCcCCchhHHHHHHHHHhcc--cceEEEe
Q psy4713 5 KLILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIR 38 (103)
Q Consensus 5 klIiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~ 38 (103)
|+|.++|+|-|+||=-+|-.|+..|.. .++-+|-
T Consensus 2 kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVLlID 37 (361)
T 3pg5_A 2 RTISFFNNKGGVGKTTLSTNVAHYFALQGKRVLYVD 37 (361)
T ss_dssp EEEEBCCSSCCHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEEcCCCCCcHHHHHHHHHHHHHhCCCcEEEEE
Confidence 688999999999999999999988865 3455543
No 346
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=56.98 E-value=20 Score=25.93 Aligned_cols=39 Identities=10% Similarity=0.185 Sum_probs=28.8
Q ss_pred eEEEEEecCcCCchhHHHHHHHHHhcc--c-ceEEEecchhh
Q psy4713 5 KLILLFSGKRKSGKDFLTDYLLERIGS--Q-HCAIIRLSAPI 43 (103)
Q Consensus 5 klIiL~sGKrksGKDy~a~~l~~~l~~--~-~~~iv~iS~pi 43 (103)
--+++|.|.+||||==++..+...+.. . .+.+++...+.
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~~~ 76 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEESV 76 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSSCH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcCCH
Confidence 347899999999999998888877643 2 46666665543
No 347
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=56.09 E-value=9.7 Score=29.47 Aligned_cols=26 Identities=31% Similarity=0.468 Sum_probs=23.1
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHh
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERI 29 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l 29 (103)
|.-++.|.|.+||||--+...|...+
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 44578999999999999999999887
No 348
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=56.08 E-value=12 Score=25.13 Aligned_cols=27 Identities=22% Similarity=0.250 Sum_probs=22.2
Q ss_pred CCCCeEEEEEecCcCCchhHHHHHHHH
Q psy4713 1 MTQPKLILLFSGKRKSGKDFLTDYLLE 27 (103)
Q Consensus 1 ~~~pklIiL~sGKrksGKDy~a~~l~~ 27 (103)
|.+.++=|+|.|..++||==+.+.+..
T Consensus 21 m~~~~~ki~vvG~~~~GKSsli~~l~~ 47 (201)
T 2gco_A 21 MAAIRKKLVIVGDGACGKTCLLIVFSK 47 (201)
T ss_dssp -CCEEEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHh
Confidence 566778899999999999988887765
No 349
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=55.92 E-value=15 Score=30.41 Aligned_cols=36 Identities=19% Similarity=0.202 Sum_probs=27.1
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhcc--cceEEEec
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRL 39 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~i 39 (103)
+..+|+|.|..||||=-+++.|+..+.. .++.+|..
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~ 137 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA 137 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 4557788899999999999999988864 45555554
No 350
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=55.59 E-value=3 Score=27.60 Aligned_cols=25 Identities=16% Similarity=0.207 Sum_probs=6.9
Q ss_pred CCeEEEEEecCcCCchhHHHHHHHH
Q psy4713 3 QPKLILLFSGKRKSGKDFLTDYLLE 27 (103)
Q Consensus 3 ~pklIiL~sGKrksGKDy~a~~l~~ 27 (103)
.+.+-|+|.|..++||==+.+.+..
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~ 42 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTS 42 (208)
T ss_dssp EEEEEEEEC----------------
T ss_pred ccceEEEEECCCCCCHHHHHHHHHh
Confidence 3567899999999999776666554
No 351
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=55.14 E-value=9.9 Score=23.89 Aligned_cols=26 Identities=19% Similarity=0.246 Sum_probs=21.5
Q ss_pred CCCeEEEEEecCcCCchhHHHHHHHH
Q psy4713 2 TQPKLILLFSGKRKSGKDFLTDYLLE 27 (103)
Q Consensus 2 ~~pklIiL~sGKrksGKDy~a~~l~~ 27 (103)
..+++=|+|-|..++||==+.+.|..
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 3 KICQFKLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHc
Confidence 45677899999999999888877764
No 352
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=54.97 E-value=11 Score=29.01 Aligned_cols=70 Identities=16% Similarity=0.107 Sum_probs=43.0
Q ss_pred CCeEEEEEecCcCCchhHHHHHHHHHh--ccc---ceEEEecc-hhhHHHHHHHcCccHHHhcCCCCcHHHhHHHHHHHH
Q psy4713 3 QPKLILLFSGKRKSGKDFLTDYLLERI--GSQ---HCAIIRLS-APIKSHWAKQNGLEMDKLLGATKYKEKYRAEMITWS 76 (103)
Q Consensus 3 ~pklIiL~sGKrksGKDy~a~~l~~~l--~~~---~~~iv~iS-~piK~~yA~~~glDl~~LL~d~~YKE~~R~~mi~wg 76 (103)
.+|++||+||. +-|...|..+. ++. .+.|+|=- .+.+ ++|+++|+.+-.+-...+-|+.+=.++.++-
T Consensus 89 ~~ri~vl~Sg~-----g~nl~~ll~~~~~g~l~~~i~~Visn~p~~~~-~~A~~~gIp~~~~~~~~~~r~~~~~~~~~~l 162 (288)
T 3obi_A 89 RRKVMLLVSQS-----DHCLADILYRWRVGDLHMIPTAIVSNHPRETF-SGFDFGDIPFYHFPVNKDTRRQQEAAITALI 162 (288)
T ss_dssp CEEEEEEECSC-----CHHHHHHHHHHHTTSSCEEEEEEEESSCGGGS-CCTTTTTCCEEECCCCTTTHHHHHHHHHHHH
T ss_pred CcEEEEEEcCC-----CCCHHHHHHHHHCCCCCeEEEEEEcCCChhHH-HHHHHcCCCEEEeCCCcccHHHHHHHHHHHH
Confidence 46788899875 34665555554 333 33444433 3354 6899999887654323345777777777776
Q ss_pred HH
Q psy4713 77 EA 78 (103)
Q Consensus 77 e~ 78 (103)
++
T Consensus 163 ~~ 164 (288)
T 3obi_A 163 AQ 164 (288)
T ss_dssp HH
T ss_pred Hh
Confidence 65
No 353
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=54.88 E-value=10 Score=28.66 Aligned_cols=34 Identities=18% Similarity=0.114 Sum_probs=26.4
Q ss_pred eEEEEEecCcCCchhHHHHHHHHHhcc---cceEEEe
Q psy4713 5 KLILLFSGKRKSGKDFLTDYLLERIGS---QHCAIIR 38 (103)
Q Consensus 5 klIiL~sGKrksGKDy~a~~l~~~l~~---~~~~iv~ 38 (103)
.-|++|.|..||||=-++..|...+.. .++.++.
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~ 141 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFIT 141 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 347888899999999999999988753 2555554
No 354
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=54.66 E-value=30 Score=24.69 Aligned_cols=41 Identities=12% Similarity=0.184 Sum_probs=29.3
Q ss_pred EEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHH
Q psy4713 8 LLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAK 49 (103)
Q Consensus 8 iL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~ 49 (103)
+++.|..|+||=+++-.+...++ ..+.++-=+..+-.++.+
T Consensus 111 ~ll~~~tG~GKT~~a~~~~~~~~-~~~liv~P~~~L~~q~~~ 151 (237)
T 2fz4_A 111 GCIVLPTGSGKTHVAMAAINELS-TPTLIVVPTLALAEQWKE 151 (237)
T ss_dssp EEEEESSSTTHHHHHHHHHHHSC-SCEEEEESSHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHcC-CCEEEEeCCHHHHHHHHH
Confidence 67889999999999988887774 345555444455555555
No 355
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=54.58 E-value=19 Score=26.44 Aligned_cols=36 Identities=17% Similarity=0.131 Sum_probs=26.5
Q ss_pred CCeEEEEEecCcCCchhHHHHHHHHHhcc--cceEEEe
Q psy4713 3 QPKLILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIR 38 (103)
Q Consensus 3 ~pklIiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~ 38 (103)
.+-.|+++||..||||=-.+-.+..+... .++.++.
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~ 47 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFK 47 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEE
Confidence 45679999999999998777666666643 4666663
No 356
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=54.41 E-value=17 Score=27.51 Aligned_cols=35 Identities=20% Similarity=0.159 Sum_probs=25.3
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhcc--cceEEEe
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIR 38 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~ 38 (103)
+..+|.|+|+.|+||==+.+.|...+.. .++.|+.
T Consensus 55 ~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~ 91 (341)
T 2p67_A 55 NTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIA 91 (341)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 3467788999999999988888776632 3444443
No 357
>3rjz_A N-type ATP pyrophosphatase superfamily; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein; 2.30A {Pyrococcus furiosus} SCOP: c.26.2.1 PDB: 3h7e_A 3rk0_A* 3rk1_A* 1ru8_A 2d13_A
Probab=54.41 E-value=17 Score=27.46 Aligned_cols=71 Identities=20% Similarity=0.162 Sum_probs=35.1
Q ss_pred CCCC-eEEEEEecCcCCchhHHHHHHHHH-hcccceEEEecc-------------hhhHHHHHHHcCccHHHhcCCCCcH
Q psy4713 1 MTQP-KLILLFSGKRKSGKDFLTDYLLER-IGSQHCAIIRLS-------------APIKSHWAKQNGLEMDKLLGATKYK 65 (103)
Q Consensus 1 ~~~p-klIiL~sGKrksGKDy~a~~l~~~-l~~~~~~iv~iS-------------~piK~~yA~~~glDl~~LL~d~~YK 65 (103)
|.+. |+|+++|| |||=++..+.-. -|-....++-.. -..=+..|++.|+.+-.+--.++ +
T Consensus 1 ~~~~MKvvvl~SG----GkDSs~al~~l~~~G~eV~~L~~~~~~~~~s~~~h~~~~e~a~~~A~~LGIpl~~v~~~g~-~ 75 (237)
T 3rjz_A 1 MVGLADVAVLYSG----GKDSNYALYWAIKNRFSVKFLVTMVSENEESYMYHTINANLTDLQARALGIPLVKGFTQGE-K 75 (237)
T ss_dssp --CCSEEEEECCS----SHHHHHHHHHHHHTTCEEEEEEEEECC--------CCSSSHHHHHHHHHTCCEEEEEC-----
T ss_pred CCCCCEEEEEecC----cHHHHHHHHHHHHcCCeEEEEEEEcCCCCCccccCCccHHHHHHHHHHcCCCEEEEECCCC-c
Confidence 4554 99999999 999766654332 232222222111 12335578888987654433333 3
Q ss_pred HHhHHHHHHHH
Q psy4713 66 EKYRAEMITWS 76 (103)
Q Consensus 66 E~~R~~mi~wg 76 (103)
|.+-.+|..-.
T Consensus 76 ~~e~e~l~~~l 86 (237)
T 3rjz_A 76 EKEVEDLKRVL 86 (237)
T ss_dssp --CHHHHHHHH
T ss_pred hHHHHHHHHHH
Confidence 44555555433
No 358
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=53.52 E-value=5.1 Score=34.57 Aligned_cols=28 Identities=25% Similarity=0.390 Sum_probs=24.5
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhcc
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIGS 31 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~~ 31 (103)
|.-.+||.|.+|+||-.++..++..++.
T Consensus 510 ~~~~vLL~GppGtGKT~Lakala~~~~~ 537 (806)
T 1ypw_A 510 PSKGVLFYGPPGCGKTLLAKAIANECQA 537 (806)
T ss_dssp CCCCCCCBCCTTSSHHHHHHHHHHHHTC
T ss_pred CCceeEEECCCCCCHHHHHHHHHHHhCC
Confidence 4556899999999999999999999863
No 359
>3bl5_A Queuosine biosynthesis protein QUEC; PREQ1 biosynthesis, RNA modification, tRNA, hydrolase; 2.95A {Bacillus subtilis}
Probab=53.48 E-value=20 Score=24.67 Aligned_cols=49 Identities=24% Similarity=0.339 Sum_probs=28.5
Q ss_pred CCCCeEEEEEecCcCCchhHHH--HHHHHHhcccceEEEecchhh--------HHHHHHHcCccH
Q psy4713 1 MTQPKLILLFSGKRKSGKDFLT--DYLLERIGSQHCAIIRLSAPI--------KSHWAKQNGLEM 55 (103)
Q Consensus 1 ~~~pklIiL~sGKrksGKDy~a--~~l~~~l~~~~~~iv~iS~pi--------K~~yA~~~glDl 55 (103)
|.+.+++|+||| |+|=.+ ..+.+. + .++..+.+.... =+..|+..|+++
T Consensus 1 m~~~~v~v~lSG----G~DS~~ll~ll~~~-~-~~v~~~~~~~~~~~~~e~~~a~~~a~~lgi~~ 59 (219)
T 3bl5_A 1 MKKEKAIVVFSG----GQDSTTCLLWALKE-F-EEVETVTFHYNQRHSQEVEVAKSIAEKLGVKN 59 (219)
T ss_dssp --CCEEEEECCS----SHHHHHHHHHHHHH-C-SEEEEEEEESSCTTCHHHHHHHHHHHTTCCCE
T ss_pred CCCCCEEEEccC----cHHHHHHHHHHHHc-C-CceEEEEEeCCCCCHHHHHHHHHHHHHhCCCe
Confidence 778899999999 999643 444443 3 345555554322 124556677754
No 360
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=52.64 E-value=12 Score=26.30 Aligned_cols=34 Identities=15% Similarity=0.231 Sum_probs=25.5
Q ss_pred CCeEEEEEecCcCCchhHHHHHHHHHhcccceEEEe
Q psy4713 3 QPKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIR 38 (103)
Q Consensus 3 ~pklIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~ 38 (103)
++-.+|.|.|..||||-=++..|... + ..+.+.+
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~-~-g~v~~~~ 51 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY-K-NDICLLT 51 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG-T-TTEEEEC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc-c-CCeEEEe
Confidence 35578999999999999988888776 2 3444443
No 361
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=52.44 E-value=18 Score=23.03 Aligned_cols=26 Identities=19% Similarity=0.259 Sum_probs=20.9
Q ss_pred CCeEEEEEecCcCCchhHHHHHHHHH
Q psy4713 3 QPKLILLFSGKRKSGKDFLTDYLLER 28 (103)
Q Consensus 3 ~pklIiL~sGKrksGKDy~a~~l~~~ 28 (103)
++.+-|+|.|..+|||-=+.+.+...
T Consensus 6 ~~~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 6 KNILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhC
Confidence 35678999999999999888877653
No 362
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=52.41 E-value=11 Score=25.38 Aligned_cols=27 Identities=19% Similarity=0.175 Sum_probs=21.7
Q ss_pred CCCCeEEEEEecCcCCchhHHHHHHHH
Q psy4713 1 MTQPKLILLFSGKRKSGKDFLTDYLLE 27 (103)
Q Consensus 1 ~~~pklIiL~sGKrksGKDy~a~~l~~ 27 (103)
|..+++=|+|.|..++||==+.+.+..
T Consensus 21 ~~~~~~ki~vvG~~~~GKSsli~~l~~ 47 (207)
T 2fv8_A 21 QSMIRKKLVVVGDGACGKTCLLIVFSK 47 (207)
T ss_dssp GGSEEEEEEEEECTTSSHHHHHHHHHH
T ss_pred ccccCcEEEEECcCCCCHHHHHHHHhc
Confidence 445677899999999999887777764
No 363
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=52.40 E-value=10 Score=27.18 Aligned_cols=22 Identities=27% Similarity=0.268 Sum_probs=19.5
Q ss_pred EEEEecCcCCchhHHHHHHHHH
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLER 28 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~ 28 (103)
|+.+.|.+||||--+...+.-.
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6788999999999999988765
No 364
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=52.40 E-value=14 Score=23.65 Aligned_cols=25 Identities=16% Similarity=0.183 Sum_probs=20.5
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHH
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLER 28 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~ 28 (103)
+.+=|+|.|..++||==+.+.|...
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 4567999999999998887777654
No 365
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=52.22 E-value=6.6 Score=27.68 Aligned_cols=15 Identities=20% Similarity=0.434 Sum_probs=12.8
Q ss_pred EEEEecCcCCchhHH
Q psy4713 7 ILLFSGKRKSGKDFL 21 (103)
Q Consensus 7 IiL~sGKrksGKDy~ 21 (103)
+++++|..||||=-+
T Consensus 78 ~~~i~g~TGsGKTt~ 92 (235)
T 3llm_A 78 VVIIRGATGCGKTTQ 92 (235)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEEeCCCCCcHHh
Confidence 678999999999743
No 366
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=52.19 E-value=17 Score=27.24 Aligned_cols=25 Identities=28% Similarity=0.409 Sum_probs=20.1
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHH
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLER 28 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~ 28 (103)
+-=|++|||.+||||==+.+.|...
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred cccEEEEEecCCCCHHHHHHHHHhh
Confidence 3447889999999998888877754
No 367
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=51.46 E-value=32 Score=23.27 Aligned_cols=26 Identities=27% Similarity=0.451 Sum_probs=20.4
Q ss_pred eEEEEEecCcCCchhHHHHHHHHHhc
Q psy4713 5 KLILLFSGKRKSGKDFLTDYLLERIG 30 (103)
Q Consensus 5 klIiL~sGKrksGKDy~a~~l~~~l~ 30 (103)
..+|+|.|..+|||==+.+.+...+.
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 45677779999999888887776653
No 368
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=51.03 E-value=7.3 Score=29.87 Aligned_cols=36 Identities=22% Similarity=0.259 Sum_probs=26.2
Q ss_pred EEEEEecCcCCchhHHHHHHHHHhcccceEEEecchh
Q psy4713 6 LILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAP 42 (103)
Q Consensus 6 lIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~p 42 (103)
-+++|+|.+||||-=+.+.|...+.. ...+|.|-++
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~~-~~g~i~i~~~ 207 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIPK-EERIISIEDT 207 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSCT-TSCEEEEESS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcC-CCcEEEECCe
Confidence 47899999999999888888776543 3445555554
No 369
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=50.91 E-value=15 Score=29.46 Aligned_cols=26 Identities=23% Similarity=0.432 Sum_probs=22.6
Q ss_pred eEEEEEecCcCCchhHHHHHHHHHhc
Q psy4713 5 KLILLFSGKRKSGKDFLTDYLLERIG 30 (103)
Q Consensus 5 klIiL~sGKrksGKDy~a~~l~~~l~ 30 (103)
...|+|.|-+||||=-++..|...++
T Consensus 24 ~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 24 RVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 34578899999999999999998876
No 370
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=50.70 E-value=20 Score=22.11 Aligned_cols=25 Identities=28% Similarity=0.335 Sum_probs=20.2
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHH
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLER 28 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~ 28 (103)
+++-|+|.|..+|||==+.+.|...
T Consensus 2 ~~~~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 2 TEYKLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhC
Confidence 4566889999999998888887643
No 371
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=50.40 E-value=7.9 Score=31.86 Aligned_cols=37 Identities=16% Similarity=0.275 Sum_probs=27.4
Q ss_pred eEEEEEecCcCCchhHHHHHHHHHhcccceEEEecchh
Q psy4713 5 KLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAP 42 (103)
Q Consensus 5 klIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~p 42 (103)
..+++|+|.+||||==+.+.+...+. ....++.|-+|
T Consensus 260 g~~i~I~GptGSGKTTlL~aL~~~i~-~~~giitied~ 296 (511)
T 2oap_1 260 KFSAIVVGETASGKTTTLNAIMMFIP-PDAKVVSIEDT 296 (511)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGGSC-TTCCEEEEESS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC-CCCCEEEEcCc
Confidence 44689999999999888877776654 34566666665
No 372
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=50.11 E-value=24 Score=21.86 Aligned_cols=25 Identities=20% Similarity=0.166 Sum_probs=20.4
Q ss_pred CCeEEEEEecCcCCchhHHHHHHHH
Q psy4713 3 QPKLILLFSGKRKSGKDFLTDYLLE 27 (103)
Q Consensus 3 ~pklIiL~sGKrksGKDy~a~~l~~ 27 (103)
.|.+=|+|.|..+|||==+.+.+..
T Consensus 2 ~~~~~i~v~G~~~~GKssl~~~l~~ 26 (168)
T 1u8z_A 2 LALHKVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEEECCCCCCHHHHHHHHHh
Confidence 3667789999999999887777764
No 373
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=49.56 E-value=14 Score=26.12 Aligned_cols=23 Identities=22% Similarity=0.270 Sum_probs=20.2
Q ss_pred EEEEecCcCCchhHHHHHHHHHh
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERI 29 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l 29 (103)
++.|.|.+||||-=+...+...+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 57899999999998888888776
No 374
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=49.12 E-value=16 Score=23.84 Aligned_cols=26 Identities=23% Similarity=0.318 Sum_probs=20.4
Q ss_pred CCeEEEEEecCcCCchhHHHHHHHHH
Q psy4713 3 QPKLILLFSGKRKSGKDFLTDYLLER 28 (103)
Q Consensus 3 ~pklIiL~sGKrksGKDy~a~~l~~~ 28 (103)
.+.+-|+|.|.++|||-=+.+.|...
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 35667899999999998777776643
No 375
>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}
Probab=48.99 E-value=38 Score=24.86 Aligned_cols=46 Identities=17% Similarity=0.161 Sum_probs=31.7
Q ss_pred EEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHHHcCccH
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQNGLEM 55 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~~~glDl 55 (103)
-|||.|= .|=..++-.+....|...+.++.. .+-|.++|++.|+|.
T Consensus 163 ~VlV~Ga--G~vG~~aiq~ak~~G~~~vi~~~~-~~~k~~~a~~lGa~~ 208 (346)
T 4a2c_A 163 NVIIIGA--GTIGLLAIQCAVALGAKSVTAIDI-SSEKLALAKSFGAMQ 208 (346)
T ss_dssp EEEEECC--SHHHHHHHHHHHHTTCSEEEEEES-CHHHHHHHHHTTCSE
T ss_pred EEEEECC--CCcchHHHHHHHHcCCcEEEEEec-hHHHHHHHHHcCCeE
Confidence 3566784 455677777788877554445544 456899999999873
No 376
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=48.64 E-value=32 Score=28.44 Aligned_cols=25 Identities=28% Similarity=0.259 Sum_probs=21.1
Q ss_pred EEEEEecCcCCchhHHHHHHHHHhc
Q psy4713 6 LILLFSGKRKSGKDFLTDYLLERIG 30 (103)
Q Consensus 6 lIiL~sGKrksGKDy~a~~l~~~l~ 30 (103)
-+++++|..|+||=+++..+...+.
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~l~ 189 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAALI 189 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHHH
Confidence 4689999999999998887777664
No 377
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=48.10 E-value=20 Score=25.44 Aligned_cols=35 Identities=23% Similarity=0.412 Sum_probs=26.5
Q ss_pred EEEEecCcCCchhHHHHHHHHHhcccceEEEecchh
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAP 42 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~p 42 (103)
-|.|-|=-||||-=.++.|++.|.+ ...++...+|
T Consensus 4 FI~~EG~dGsGKsTq~~~L~~~L~~-~~~v~~~~eP 38 (205)
T 4hlc_A 4 FITFEGPEGSGKTTVINEVYHRLVK-DYDVIMTREP 38 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEEESS
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHC-CCCEEEeeCC
Confidence 4668999999999999999999965 2334444444
No 378
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=47.85 E-value=20 Score=22.95 Aligned_cols=26 Identities=27% Similarity=0.333 Sum_probs=21.5
Q ss_pred CCeEEEEEecCcCCchhHHHHHHHHH
Q psy4713 3 QPKLILLFSGKRKSGKDFLTDYLLER 28 (103)
Q Consensus 3 ~pklIiL~sGKrksGKDy~a~~l~~~ 28 (103)
++++=|+|.|..++||==+.+.|...
T Consensus 2 ~~~~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 2 STEYKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhC
Confidence 46778999999999998888877643
No 379
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=47.07 E-value=60 Score=23.02 Aligned_cols=43 Identities=14% Similarity=0.082 Sum_probs=28.2
Q ss_pred EEEEecCcCCchhHHHHHHHHHhc----ccceEEEecchhhHHHHHH
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIG----SQHCAIIRLSAPIKSHWAK 49 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~----~~~~~iv~iS~piK~~yA~ 49 (103)
-+++.+..||||=.++-...-.+- ...+-|+.=+-.+-.++++
T Consensus 46 ~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~ 92 (367)
T 1hv8_A 46 NIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTPTRELAIQVAD 92 (367)
T ss_dssp EEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEECSCHHHHHHHHH
T ss_pred CEEEECCCCChHHHHHHHHHHHHhcccCCCcEEEEcCCHHHHHHHHH
Confidence 467899999999998766554432 1355555555555566665
No 380
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=46.88 E-value=4.4 Score=33.74 Aligned_cols=24 Identities=13% Similarity=0.227 Sum_probs=21.6
Q ss_pred EEEEecCcCCchhHHHHHHHHHhc
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIG 30 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~ 30 (103)
=|||.|..|+||-.+|..+++.+.
T Consensus 329 ~vLL~GppGtGKT~LAr~la~~~~ 352 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISRVAP 352 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSSTTCS
T ss_pred ceEEECCCchHHHHHHHHHHHhCC
Confidence 488999999999999999998875
No 381
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=46.70 E-value=18 Score=25.39 Aligned_cols=25 Identities=36% Similarity=0.331 Sum_probs=20.9
Q ss_pred EEEEEecCcCCchhHHHHHHHHHhc
Q psy4713 6 LILLFSGKRKSGKDFLTDYLLERIG 30 (103)
Q Consensus 6 lIiL~sGKrksGKDy~a~~l~~~l~ 30 (103)
-+.+|+|.++|||==+.+.+.-.|+
T Consensus 24 ~~~~I~G~NgsGKStil~ai~~~l~ 48 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLLDAILVGLY 48 (203)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhc
Confidence 3678999999999999998876654
No 382
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=46.49 E-value=12 Score=25.28 Aligned_cols=23 Identities=17% Similarity=0.307 Sum_probs=18.0
Q ss_pred CCeEEEEEecCcCCchhHHHHHH
Q psy4713 3 QPKLILLFSGKRKSGKDFLTDYL 25 (103)
Q Consensus 3 ~pklIiL~sGKrksGKDy~a~~l 25 (103)
.+.+-|+|-|..++||==+.+.+
T Consensus 21 ~~~~ki~vvG~~~vGKSsLi~~l 43 (195)
T 3cbq_A 21 DGIFKVMLVGESGVGKSTLAGTF 43 (195)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHT
T ss_pred CcEEEEEEECCCCCCHHHHHHHH
Confidence 45678999999999997666655
No 383
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=46.23 E-value=13 Score=28.44 Aligned_cols=22 Identities=23% Similarity=0.261 Sum_probs=19.1
Q ss_pred EEEEEecCcCCchhHHHHHHHH
Q psy4713 6 LILLFSGKRKSGKDFLTDYLLE 27 (103)
Q Consensus 6 lIiL~sGKrksGKDy~a~~l~~ 27 (103)
=+.+|+|+.||||==+-|.+.=
T Consensus 26 gl~vi~G~NGaGKT~ileAI~~ 47 (371)
T 3auy_A 26 GIVAIIGENGSGKSSIFEAVFF 47 (371)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999988888874
No 384
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=46.22 E-value=28 Score=21.54 Aligned_cols=24 Identities=21% Similarity=0.238 Sum_probs=20.1
Q ss_pred CeEEEEEecCcCCchhHHHHHHHH
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLE 27 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~ 27 (103)
+++=|+|-|..+|||==+.+.+..
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~ 25 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEEEECCCCCCHHHHHHHHHc
Confidence 567789999999999888777764
No 385
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=45.16 E-value=24 Score=22.16 Aligned_cols=26 Identities=19% Similarity=0.140 Sum_probs=21.4
Q ss_pred CCeEEEEEecCcCCchhHHHHHHHHH
Q psy4713 3 QPKLILLFSGKRKSGKDFLTDYLLER 28 (103)
Q Consensus 3 ~pklIiL~sGKrksGKDy~a~~l~~~ 28 (103)
++.+=|+|.|..++||==+.+.+...
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 4 AYSFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHC
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcC
Confidence 45677999999999998888877643
No 386
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=44.95 E-value=26 Score=22.92 Aligned_cols=25 Identities=20% Similarity=0.256 Sum_probs=20.0
Q ss_pred CCeEEEEEecCcCCchhHHHHHHHH
Q psy4713 3 QPKLILLFSGKRKSGKDFLTDYLLE 27 (103)
Q Consensus 3 ~pklIiL~sGKrksGKDy~a~~l~~ 27 (103)
++.+=|+|.|..+|||==+.+.+..
T Consensus 18 ~~~~ki~v~G~~~~GKSsli~~l~~ 42 (189)
T 1z06_A 18 SRIFKIIVIGDSNVGKTCLTYRFCA 42 (189)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEEECCCCCCHHHHHHHHHc
Confidence 4567899999999999877777753
No 387
>2gs3_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase; GSHPX-4,phospholipid hydroperoxide; 1.90A {Homo sapiens}
Probab=44.71 E-value=63 Score=21.48 Aligned_cols=52 Identities=13% Similarity=0.079 Sum_probs=32.0
Q ss_pred CeEEEEEecCcCCchhHHHHH------HHHHhcccceEEEecch-----------hhHHHHHHHcCccHHHh
Q psy4713 4 PKLILLFSGKRKSGKDFLTDY------LLERIGSQHCAIIRLSA-----------PIKSHWAKQNGLEMDKL 58 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~------l~~~l~~~~~~iv~iS~-----------piK~~yA~~~glDl~~L 58 (103)
+.++|.|.+ .-|+ +|... +.+.+....+.|+.||- .-=++|++.+|+++.-+
T Consensus 50 k~vlv~F~a-twC~--~C~~~~~~l~~l~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~p~~ 118 (185)
T 2gs3_A 50 FVCIVTNVA-SQGG--KTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQEPGSNEEIKEFAAGYNVKFDMF 118 (185)
T ss_dssp SEEEEEEEC-SSST--THHHHHHHHHHHHHHHGGGTEEEEEEECCTTTTCCCSCHHHHHHHHHHTTCCSEEB
T ss_pred CEEEEEEec-CCCC--chHHHHHHHHHHHHHhhcCCeEEEEEECcccCCCCCCCHHHHHHHHHHcCCCCeee
Confidence 344555555 5566 78544 34444445688888871 12267889999987544
No 388
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=44.52 E-value=23 Score=22.37 Aligned_cols=24 Identities=29% Similarity=0.445 Sum_probs=19.7
Q ss_pred CeEEEEEecCcCCchhHHHHHHHH
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLE 27 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~ 27 (103)
+++=|+|.|..+|||==+.+.|..
T Consensus 13 ~~~~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 13 RKFKLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHc
Confidence 457788899999999888887763
No 389
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=44.34 E-value=29 Score=21.66 Aligned_cols=26 Identities=12% Similarity=0.212 Sum_probs=20.6
Q ss_pred CCeEEEEEecCcCCchhHHHHHHHHH
Q psy4713 3 QPKLILLFSGKRKSGKDFLTDYLLER 28 (103)
Q Consensus 3 ~pklIiL~sGKrksGKDy~a~~l~~~ 28 (103)
+..+=|+|.|..+|||==+.+.+...
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHC
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcC
Confidence 34567899999999999888887653
No 390
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=44.02 E-value=32 Score=26.47 Aligned_cols=29 Identities=21% Similarity=0.322 Sum_probs=24.2
Q ss_pred CCeEEEEEecCcCCchhHHHHHHHHHhcc
Q psy4713 3 QPKLILLFSGKRKSGKDFLTDYLLERIGS 31 (103)
Q Consensus 3 ~pklIiL~sGKrksGKDy~a~~l~~~l~~ 31 (103)
.|.-|+.|.|.+||||==+...|...+..
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~ 155 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKN 155 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 35678999999999999888888877754
No 391
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=43.86 E-value=17 Score=26.33 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=20.0
Q ss_pred EEEEecCcCCchhHHHHHHHHHhc
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIG 30 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~ 30 (103)
++.+.|.+||||-=+...+.-.+.
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~~ 56 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAEMD 56 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCSE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 788999999999888888776653
No 392
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=43.50 E-value=35 Score=26.12 Aligned_cols=33 Identities=24% Similarity=0.209 Sum_probs=22.6
Q ss_pred EEEecCcCCchhHHHHHHHHHhcc--cceEEEecc
Q psy4713 8 LLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRLS 40 (103)
Q Consensus 8 iL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~iS 40 (103)
++|.|..||||-.....+...+-. ..+.|+-.-
T Consensus 56 ~~i~G~tGsGKs~~~~~li~~~~~~g~~viv~Dpk 90 (437)
T 1e9r_A 56 LLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDPN 90 (437)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEEET
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence 578899999999987666665543 344444433
No 393
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=43.27 E-value=34 Score=21.69 Aligned_cols=26 Identities=27% Similarity=0.350 Sum_probs=21.2
Q ss_pred CCCeEEEEEecCcCCchhHHHHHHHH
Q psy4713 2 TQPKLILLFSGKRKSGKDFLTDYLLE 27 (103)
Q Consensus 2 ~~pklIiL~sGKrksGKDy~a~~l~~ 27 (103)
.++.+=|+|-|..+|||==+.+.+..
T Consensus 3 ~~~~~ki~v~G~~~~GKssl~~~l~~ 28 (178)
T 2hxs_A 3 HMRQLKIVVLGDGASGKTSLTTCFAQ 28 (178)
T ss_dssp CCCEEEEEEECCTTSSHHHHHHHHHG
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHh
Confidence 35677899999999999887777764
No 394
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=43.25 E-value=30 Score=21.83 Aligned_cols=24 Identities=17% Similarity=0.214 Sum_probs=19.6
Q ss_pred CCeEEEEEecCcCCchhHHHHHHH
Q psy4713 3 QPKLILLFSGKRKSGKDFLTDYLL 26 (103)
Q Consensus 3 ~pklIiL~sGKrksGKDy~a~~l~ 26 (103)
++.+=|+|-|..++||==+.+.|.
T Consensus 2 ~~~~ki~i~G~~~vGKSsl~~~l~ 25 (175)
T 2nzj_A 2 MALYRVVLLGDPGVGKTSLASLFA 25 (175)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEEEEECCCCccHHHHHHHHh
Confidence 567789999999999977766664
No 395
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=43.18 E-value=25 Score=23.87 Aligned_cols=25 Identities=16% Similarity=0.218 Sum_probs=20.9
Q ss_pred CCeEEEEEecCcCCchhHHHHHHHH
Q psy4713 3 QPKLILLFSGKRKSGKDFLTDYLLE 27 (103)
Q Consensus 3 ~pklIiL~sGKrksGKDy~a~~l~~ 27 (103)
.+.+=|+|-|..++||==+.+.+..
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC
T ss_pred cceEEEEEECcCCCCHHHHHHHHHc
Confidence 4568899999999999888887763
No 396
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=43.16 E-value=24 Score=22.39 Aligned_cols=25 Identities=16% Similarity=0.267 Sum_probs=19.8
Q ss_pred CCeEEEEEecCcCCchhHHHHHHHH
Q psy4713 3 QPKLILLFSGKRKSGKDFLTDYLLE 27 (103)
Q Consensus 3 ~pklIiL~sGKrksGKDy~a~~l~~ 27 (103)
.+.+=|+|.|..+|||==+.+.+..
T Consensus 5 ~~~~~i~v~G~~~~GKSsli~~l~~ 29 (177)
T 1wms_A 5 SSLFKVILLGDGGVGKSSLMNRYVT 29 (177)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHH
T ss_pred cceeEEEEECCCCCCHHHHHHHHHc
Confidence 3467789999999999877777653
No 397
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=43.06 E-value=25 Score=26.70 Aligned_cols=27 Identities=19% Similarity=0.107 Sum_probs=22.6
Q ss_pred eEEEEEecCcCCchhHHHHHHHHHhcc
Q psy4713 5 KLILLFSGKRKSGKDFLTDYLLERIGS 31 (103)
Q Consensus 5 klIiL~sGKrksGKDy~a~~l~~~l~~ 31 (103)
.-++.|.|.+||||==+...|...+..
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll~~ 128 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYYQN 128 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 347778899999999999999887754
No 398
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=42.94 E-value=35 Score=21.94 Aligned_cols=26 Identities=27% Similarity=0.390 Sum_probs=21.0
Q ss_pred CCeEEEEEecCcCCchhHHHHHHHHH
Q psy4713 3 QPKLILLFSGKRKSGKDFLTDYLLER 28 (103)
Q Consensus 3 ~pklIiL~sGKrksGKDy~a~~l~~~ 28 (103)
.|.+-|+|.|..++||==+.+.+...
T Consensus 16 ~~~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 16 LPTYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 35778999999999998777777643
No 399
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=42.89 E-value=26 Score=21.82 Aligned_cols=24 Identities=17% Similarity=0.292 Sum_probs=19.6
Q ss_pred CeEEEEEecCcCCchhHHHHHHHH
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLE 27 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~ 27 (103)
|++=|+|.|..+|||==+.+.+..
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVS 25 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHhc
Confidence 567789999999999877777754
No 400
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=42.62 E-value=18 Score=27.88 Aligned_cols=20 Identities=25% Similarity=0.361 Sum_probs=17.5
Q ss_pred EEEEecCcCCchhHHHHHHH
Q psy4713 7 ILLFSGKRKSGKDFLTDYLL 26 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~ 26 (103)
+.+|+|++||||-=+-|.+.
T Consensus 25 ~~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 67799999999998888776
No 401
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=42.46 E-value=26 Score=23.45 Aligned_cols=23 Identities=39% Similarity=0.481 Sum_probs=19.8
Q ss_pred EEEEecCcCCchhHHHHHHHHHh
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERI 29 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l 29 (103)
+.+|.|.+||||==+.+.+.-.+
T Consensus 25 ~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 67899999999999888887655
No 402
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=42.39 E-value=16 Score=24.78 Aligned_cols=27 Identities=22% Similarity=0.337 Sum_probs=20.5
Q ss_pred CCeEEEEEecCcCCchhHHHHH-HHHHh
Q psy4713 3 QPKLILLFSGKRKSGKDFLTDY-LLERI 29 (103)
Q Consensus 3 ~pklIiL~sGKrksGKDy~a~~-l~~~l 29 (103)
.+++-|+|-|..+|||==+.+. +...+
T Consensus 13 ~~~~ki~v~G~~~~GKSsli~~~~~~~~ 40 (221)
T 3gj0_A 13 QVQFKLVLVGDGGTGKTTFVKRHLTGEF 40 (221)
T ss_dssp CCEEEEEEEECTTSSHHHHHTTBHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCC
Confidence 4567899999999999877776 44443
No 403
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=42.08 E-value=26 Score=21.95 Aligned_cols=26 Identities=19% Similarity=0.199 Sum_probs=20.9
Q ss_pred CCeEEEEEecCcCCchhHHHHHHHHH
Q psy4713 3 QPKLILLFSGKRKSGKDFLTDYLLER 28 (103)
Q Consensus 3 ~pklIiL~sGKrksGKDy~a~~l~~~ 28 (103)
.+.+=|+|.|..++||==+.+.+...
T Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 4 LRELKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcC
Confidence 45677999999999998877777654
No 404
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=41.87 E-value=36 Score=21.19 Aligned_cols=24 Identities=25% Similarity=0.293 Sum_probs=19.8
Q ss_pred CeEEEEEecCcCCchhHHHHHHHH
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLE 27 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~ 27 (103)
+++=|+|-|..+|||-=+.+.+..
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~ 25 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceeEEEEECCCCCCHHHHHHHHHc
Confidence 456688899999999888887765
No 405
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=41.86 E-value=9.1 Score=34.19 Aligned_cols=16 Identities=31% Similarity=0.559 Sum_probs=12.8
Q ss_pred EEEEecCcCCchhHHH
Q psy4713 7 ILLFSGKRKSGKDFLT 22 (103)
Q Consensus 7 IiL~sGKrksGKDy~a 22 (103)
+++|||-|||||-=+|
T Consensus 26 l~v~tG~SGSGKSsLa 41 (916)
T 3pih_A 26 LVVITGVSGSGKSSLA 41 (916)
T ss_dssp EEEEEESTTSSSHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 6789999999996544
No 406
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=41.78 E-value=23 Score=22.04 Aligned_cols=21 Identities=29% Similarity=0.531 Sum_probs=17.6
Q ss_pred EEEecCcCCchhHHHHHHHHH
Q psy4713 8 LLFSGKRKSGKDFLTDYLLER 28 (103)
Q Consensus 8 iL~sGKrksGKDy~a~~l~~~ 28 (103)
|+|.|..++||==+.+.+...
T Consensus 4 i~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 4 VVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEECCTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 678899999999888887654
No 407
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=41.66 E-value=33 Score=21.81 Aligned_cols=25 Identities=20% Similarity=0.166 Sum_probs=20.3
Q ss_pred CCeEEEEEecCcCCchhHHHHHHHH
Q psy4713 3 QPKLILLFSGKRKSGKDFLTDYLLE 27 (103)
Q Consensus 3 ~pklIiL~sGKrksGKDy~a~~l~~ 27 (103)
.+.+=|+|.|..+|||==+.+.+..
T Consensus 16 ~~~~ki~v~G~~~~GKSsli~~l~~ 40 (187)
T 2a9k_A 16 LALHKVIMVGSGGVGKSALTLQFMY 40 (187)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHhh
Confidence 3567789999999999888877764
No 408
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=41.64 E-value=31 Score=21.74 Aligned_cols=25 Identities=20% Similarity=0.240 Sum_probs=20.7
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHH
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLER 28 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~ 28 (103)
+.+=|+|.|..++||==+.+.+...
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHcC
Confidence 4677899999999999888887654
No 409
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=41.58 E-value=38 Score=22.46 Aligned_cols=27 Identities=30% Similarity=0.348 Sum_probs=21.6
Q ss_pred CCCeEEEEEecCcCCchhHHHHHHHHH
Q psy4713 2 TQPKLILLFSGKRKSGKDFLTDYLLER 28 (103)
Q Consensus 2 ~~pklIiL~sGKrksGKDy~a~~l~~~ 28 (103)
..+++=|+|-|..++||==+.+.+...
T Consensus 17 ~~~~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 17 QGPELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp CCCEEEEEEECCTTSCHHHHHHHHHHS
T ss_pred CCCeeEEEEECCCCCCHHHHHHHHhcC
Confidence 356788999999999998877766543
No 410
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=41.43 E-value=39 Score=25.80 Aligned_cols=26 Identities=19% Similarity=0.303 Sum_probs=22.4
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHh
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERI 29 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l 29 (103)
+..+|.|+|..+|||==+.+.|...+
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 45789999999999998888888765
No 411
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=41.40 E-value=43 Score=24.75 Aligned_cols=36 Identities=11% Similarity=0.255 Sum_probs=27.6
Q ss_pred CCeEEEEEecCcCCchhHHHHHHHHHhcc--cceEEEe
Q psy4713 3 QPKLILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIR 38 (103)
Q Consensus 3 ~pklIiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~ 38 (103)
+.+.|++..-.+++||=++|-.|...|.+ .++..++
T Consensus 20 m~k~i~ItgT~t~vGKT~vs~gL~~~L~~~G~~V~~fK 57 (242)
T 3qxc_A 20 QGHMLFISATNTNAGKTTCARLLAQYCNACGVKTILLK 57 (242)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred cCcEEEEEeCCCCCcHHHHHHHHHHHHHhCCCceEEEe
Confidence 45677777778999999999999988866 4455554
No 412
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=41.34 E-value=13 Score=23.99 Aligned_cols=23 Identities=22% Similarity=0.158 Sum_probs=11.3
Q ss_pred CeEEEEEecCcCCchhHHHHHHH
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLL 26 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~ 26 (103)
+.+=|+|-|..++||==+.+.+.
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~l~ 29 (183)
T 2fu5_C 7 YLFKLLLIGDSGVGKTCVLFRFS 29 (183)
T ss_dssp EEEEEEEECCCCC----------
T ss_pred CceEEEEECCCCCCHHHHHHHHH
Confidence 46779999999999987776664
No 413
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=41.15 E-value=11 Score=33.33 Aligned_cols=16 Identities=38% Similarity=0.684 Sum_probs=13.3
Q ss_pred EEEEecCcCCchhHHH
Q psy4713 7 ILLFSGKRKSGKDFLT 22 (103)
Q Consensus 7 IiL~sGKrksGKDy~a 22 (103)
+++|||=|||||-=++
T Consensus 38 l~viTGvSGSGKSSLa 53 (842)
T 2vf7_A 38 LVVFTGVSGSGKSSLA 53 (842)
T ss_dssp EEEEESSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 6789999999996554
No 414
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=41.14 E-value=31 Score=23.59 Aligned_cols=26 Identities=27% Similarity=0.452 Sum_probs=23.1
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHh
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERI 29 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l 29 (103)
|--|+.+.|.+||||==+...+...+
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 44588999999999999999999887
No 415
>2bw0_A 10-FTHFDH, 10-formyltetrahydrofolate dehydrogenase; nucleotide biosynthesis, oxidoreductase; 1.7A {Homo sapiens} SCOP: b.46.1.1 c.65.1.1 PDB: 2cfi_A* 1s3i_A
Probab=41.04 E-value=58 Score=25.27 Aligned_cols=50 Identities=14% Similarity=0.227 Sum_probs=30.2
Q ss_pred CCCCeEEEEEecCcCCchhHHHHHHHHHhcc--cceEEEec------chhhHHHHHHHcCccHHH
Q psy4713 1 MTQPKLILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRL------SAPIKSHWAKQNGLEMDK 57 (103)
Q Consensus 1 ~~~pklIiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~i------S~piK~~yA~~~glDl~~ 57 (103)
|++.|++++ | |-+|-+..|...+.. ..+.||+. ..|.| ++|.++|+..-.
T Consensus 20 ~~~mrIvf~--G----~~~fa~~~L~~L~~~~~~i~~Vvt~pd~~~~~~~v~-~~A~~~gIpv~~ 77 (329)
T 2bw0_A 20 FQSMKIAVI--G----QSLFGQEVYCHLRKEGHEVVGVFTVPDKDGKADPLG-LEAEKDGVPVFK 77 (329)
T ss_dssp -CCCEEEEE--C----CHHHHHHHHHHHHHTTCEEEEEEECCCCSSCCCHHH-HHHHHHTCCEEE
T ss_pred CCCCEEEEE--c----CcHHHHHHHHHHHHCCCeEEEEEeCCCcCCCCCHHH-HHHHHcCCCEEe
Confidence 344455444 3 567766566555433 44556653 25888 899999997544
No 416
>3av3_A Phosphoribosylglycinamide formyltransferase; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; HET: MSE; 1.70A {Geobacillus kaustophilus}
Probab=40.88 E-value=29 Score=25.25 Aligned_cols=70 Identities=9% Similarity=0.030 Sum_probs=36.9
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhcc----cceEEEec-chhhHHHHHHHcCccHHHhcC-CCCcHHHhHHHHHHHHH
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIGS----QHCAIIRL-SAPIKSHWAKQNGLEMDKLLG-ATKYKEKYRAEMITWSE 77 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~~----~~~~iv~i-S~piK~~yA~~~glDl~~LL~-d~~YKE~~R~~mi~wge 77 (103)
+|+.|+|||-. .+...+|...... ..+.|++= .++-=.++|+++|+..-.+-. +-.-+|.|-++++++-+
T Consensus 4 ~ki~vl~sG~g----~~~~~~l~~l~~~~l~~~I~~Vit~~~~~~v~~~A~~~gIp~~~~~~~~~~~~~~~~~~~~~~l~ 79 (212)
T 3av3_A 4 KRLAVFASGSG----TNFQAIVDAAKRGDLPARVALLVCDRPGAKVIERAARENVPAFVFSPKDYPSKAAFESEILRELK 79 (212)
T ss_dssp EEEEEECCSSC----HHHHHHHHHHHTTCCCEEEEEEEESSTTCHHHHHHHHTTCCEEECCGGGSSSHHHHHHHHHHHHH
T ss_pred cEEEEEEECCc----HHHHHHHHHHHhCCCCCeEEEEEeCCCCcHHHHHHHHcCCCEEEeCcccccchhhhHHHHHHHHH
Confidence 58999999963 2333344333222 22334432 112223689999997642211 11236677777776654
No 417
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=40.87 E-value=31 Score=26.30 Aligned_cols=33 Identities=18% Similarity=0.172 Sum_probs=26.4
Q ss_pred EEEEecCcCCchhHHHHHHHHHhcc--cceEEEec
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIRL 39 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~i 39 (103)
||.|+||=|.||==+|--|...|.+ .++-+|-.
T Consensus 50 VIAIaGKGGVGKTTtavNLA~aLA~~GkkVllID~ 84 (314)
T 3fwy_A 50 VFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIGC 84 (314)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred EEEEECCCccCHHHHHHHHHHHHHHCCCeEEEEec
Confidence 7778999999999999999888866 45555543
No 418
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=40.82 E-value=26 Score=23.50 Aligned_cols=26 Identities=23% Similarity=0.293 Sum_probs=21.1
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHh
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERI 29 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l 29 (103)
+..-|+|.|..++||==+.+.+....
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45678999999999998888877643
No 419
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=40.61 E-value=20 Score=26.14 Aligned_cols=24 Identities=25% Similarity=0.279 Sum_probs=20.0
Q ss_pred EEEEecCcCCchhHHHHHHHHHhc
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIG 30 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~ 30 (103)
++.|.|.+||||-=+...+.-.+.
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl~~ 60 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRFYI 60 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 788999999999888888766654
No 420
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=40.47 E-value=22 Score=25.86 Aligned_cols=22 Identities=23% Similarity=0.295 Sum_probs=19.6
Q ss_pred EEEEecCcCCchhHHHHHHHHH
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLER 28 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~ 28 (103)
|+.+.|.+||||==+...+.-.
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7889999999999888888775
No 421
>3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane, oxidoreductase, transmembrane; 1.80A {Homo sapiens} SCOP: c.47.1.0 PDB: 3cyn_A
Probab=40.39 E-value=77 Score=20.86 Aligned_cols=52 Identities=13% Similarity=0.287 Sum_probs=33.3
Q ss_pred eEEEEEecCcCCchhHHHHH------HHHHhcccceEEEecc-----------hhhHHHHHHH-cCccHHHh
Q psy4713 5 KLILLFSGKRKSGKDFLTDY------LLERIGSQHCAIIRLS-----------APIKSHWAKQ-NGLEMDKL 58 (103)
Q Consensus 5 klIiL~sGKrksGKDy~a~~------l~~~l~~~~~~iv~iS-----------~piK~~yA~~-~glDl~~L 58 (103)
|.+||+-.-.-|| +|... +.+.++...+.||.|| ..-=++|++. +|+++.-+
T Consensus 39 k~vlv~F~atwC~--~C~~~~p~l~~l~~~~~~~~~~vi~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 108 (180)
T 3kij_A 39 KVSLVVNVASDCQ--LTDRNYLGLKELHKEFGPSHFSVLAFPCNQFGESEPRPSKEVESFARKNYGVTFPIF 108 (180)
T ss_dssp SEEEEEEECSSST--THHHHHHHHHHHHHHHTTTSEEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSCBB
T ss_pred CEEEEEEEecCCC--CcHHHHHHHHHHHHHhccCCeEEEEEECCccccCCCCCHHHHHHHHHHhcCCCCcee
Confidence 3555555556677 78764 4455555568899986 1233578888 89887643
No 422
>2eq9_C Pyruvate dehydrogenase complex, dihydrolipoamide acetyltransferase E2 component; protein-protein complex, oxidoreductase; HET: FAD; 2.09A {Thermus thermophilus}
Probab=40.22 E-value=19 Score=19.53 Aligned_cols=24 Identities=17% Similarity=0.429 Sum_probs=20.4
Q ss_pred hhhHHHHHHHcCccHHHhcCCCCc
Q psy4713 41 APIKSHWAKQNGLEMDKLLGATKY 64 (103)
Q Consensus 41 ~piK~~yA~~~glDl~~LL~d~~Y 64 (103)
.|.-+..|.++|+|+..+-..++-
T Consensus 4 sP~ar~la~e~gidl~~v~gtG~~ 27 (41)
T 2eq9_C 4 VPAARKLARELGIPIEEVPGSGPL 27 (41)
T ss_dssp CHHHHHHHHHTTCCGGGSCCCSTT
T ss_pred ChHHHHHHHHcCCChhhcCCCCCC
Confidence 477788999999999999887765
No 423
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=40.20 E-value=36 Score=21.62 Aligned_cols=25 Identities=16% Similarity=0.250 Sum_probs=20.5
Q ss_pred CCeEEEEEecCcCCchhHHHHHHHH
Q psy4713 3 QPKLILLFSGKRKSGKDFLTDYLLE 27 (103)
Q Consensus 3 ~pklIiL~sGKrksGKDy~a~~l~~ 27 (103)
++.+=|+|.|..++||==+.+.+..
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l~~ 32 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFKD 32 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcceEEEEECcCCCCHHHHHHHHHh
Confidence 4567789999999999887777754
No 424
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=39.85 E-value=21 Score=26.51 Aligned_cols=26 Identities=19% Similarity=0.218 Sum_probs=21.0
Q ss_pred EEEEEecCcCCchhHHHHHHHHHhcc
Q psy4713 6 LILLFSGKRKSGKDFLTDYLLERIGS 31 (103)
Q Consensus 6 lIiL~sGKrksGKDy~a~~l~~~l~~ 31 (103)
=++.|.|.+||||-=+...|.-.+..
T Consensus 46 e~~~i~G~nGsGKSTLlk~l~Gl~~p 71 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALLQNLYQP 71 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 37889999999998888887766543
No 425
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=39.76 E-value=21 Score=25.76 Aligned_cols=26 Identities=23% Similarity=0.301 Sum_probs=20.9
Q ss_pred eEEEEEecCcCCchhHHHHHHHHHhc
Q psy4713 5 KLILLFSGKRKSGKDFLTDYLLERIG 30 (103)
Q Consensus 5 klIiL~sGKrksGKDy~a~~l~~~l~ 30 (103)
-=++.+.|.+||||-=+...+.-.+.
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLERFYQ 53 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 34788999999999888888776653
No 426
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=39.76 E-value=66 Score=21.17 Aligned_cols=42 Identities=12% Similarity=0.154 Sum_probs=27.2
Q ss_pred EEEecCcCCchhHHHHHHHHHhc--------ccceEEEecchhhHHH-HHH
Q psy4713 8 LLFSGKRKSGKDFLTDYLLERIG--------SQHCAIIRLSAPIKSH-WAK 49 (103)
Q Consensus 8 iL~sGKrksGKDy~a~~l~~~l~--------~~~~~iv~iS~piK~~-yA~ 49 (103)
+++.+..|+||=+++-.+...+- ...+.|+-=+..+-.+ +++
T Consensus 51 ~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~ 101 (216)
T 3b6e_A 51 IIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRK 101 (216)
T ss_dssp EEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHH
Confidence 67899999999999887766541 1345555444444444 544
No 427
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=39.66 E-value=35 Score=22.39 Aligned_cols=26 Identities=19% Similarity=0.310 Sum_probs=20.7
Q ss_pred CCeEEEEEecCcCCchhHHHHHHHHH
Q psy4713 3 QPKLILLFSGKRKSGKDFLTDYLLER 28 (103)
Q Consensus 3 ~pklIiL~sGKrksGKDy~a~~l~~~ 28 (103)
++.+-|+|.|..++||==+.+.|...
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 6 KVLLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcC
Confidence 46788999999999998777777543
No 428
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=39.63 E-value=30 Score=23.05 Aligned_cols=25 Identities=20% Similarity=0.270 Sum_probs=20.1
Q ss_pred CCCeEEEEEecCcCCchhHHHHHHH
Q psy4713 2 TQPKLILLFSGKRKSGKDFLTDYLL 26 (103)
Q Consensus 2 ~~pklIiL~sGKrksGKDy~a~~l~ 26 (103)
..+.+-|+|.|..++||==+.+.+.
T Consensus 26 ~~~~~ki~v~G~~~vGKSsLi~~l~ 50 (192)
T 2b6h_A 26 GKKQMRILMVGLDAAGKTTILYKLK 50 (192)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHC
T ss_pred cCCccEEEEECCCCCCHHHHHHHHH
Confidence 4567889999999999977766663
No 429
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=39.58 E-value=41 Score=21.95 Aligned_cols=25 Identities=20% Similarity=0.166 Sum_probs=20.3
Q ss_pred CCeEEEEEecCcCCchhHHHHHHHH
Q psy4713 3 QPKLILLFSGKRKSGKDFLTDYLLE 27 (103)
Q Consensus 3 ~pklIiL~sGKrksGKDy~a~~l~~ 27 (103)
.+.+-|+|.|..+|||==+.+.+..
T Consensus 12 ~~~~ki~v~G~~~~GKSsli~~l~~ 36 (206)
T 2bov_A 12 LALHKVIMVGSGGVGKSALTLQFMY 36 (206)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEEECCCCCCHHHHHHHHHh
Confidence 3567789999999999888777764
No 430
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=39.48 E-value=22 Score=25.70 Aligned_cols=25 Identities=16% Similarity=0.053 Sum_probs=19.2
Q ss_pred EEEEEecCcCCchhHHHHHHHHHhc
Q psy4713 6 LILLFSGKRKSGKDFLTDYLLERIG 30 (103)
Q Consensus 6 lIiL~sGKrksGKDy~a~~l~~~l~ 30 (103)
=++.+.|.+||||==+...+.-.+.
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~Gl~~ 56 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGCLDK 56 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCC
Confidence 3688999999999877776665543
No 431
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=39.29 E-value=35 Score=22.42 Aligned_cols=25 Identities=20% Similarity=0.329 Sum_probs=20.4
Q ss_pred CCeEEEEEecCcCCchhHHHHHHHH
Q psy4713 3 QPKLILLFSGKRKSGKDFLTDYLLE 27 (103)
Q Consensus 3 ~pklIiL~sGKrksGKDy~a~~l~~ 27 (103)
++.+=|+|.|..++||==+.+.+..
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~ 44 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIAS 44 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHc
Confidence 4567799999999999887777764
No 432
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=39.27 E-value=86 Score=21.07 Aligned_cols=42 Identities=12% Similarity=0.055 Sum_probs=27.5
Q ss_pred EEEecCcCCchhHHHHHHHHHh-cc----cceEEEecchhhHHHHHH
Q psy4713 8 LLFSGKRKSGKDFLTDYLLERI-GS----QHCAIIRLSAPIKSHWAK 49 (103)
Q Consensus 8 iL~sGKrksGKDy~a~~l~~~l-~~----~~~~iv~iS~piK~~yA~ 49 (103)
+++.+..||||=.++-...-.. .. ..+-|+.=+..+-.++++
T Consensus 54 ~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~ 100 (220)
T 1t6n_A 54 VLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISK 100 (220)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHH
T ss_pred EEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEeCCHHHHHHHHH
Confidence 6788999999998877665544 11 255566555555555554
No 433
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=39.16 E-value=24 Score=25.33 Aligned_cols=24 Identities=21% Similarity=0.376 Sum_probs=20.0
Q ss_pred EEEEecCcCCchhHHHHHHHHHhc
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIG 30 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~ 30 (103)
++.+.|++||||-=+...+.-.+.
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGELE 59 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 688999999999888888776654
No 434
>2hma_A Probable tRNA (5-methylaminomethyl-2-thiouridylat methyltransferase; alpha-beta, beta barrel, structural genomics, PSI-2; HET: MSE SAM; 2.41A {Streptococcus pneumoniae}
Probab=39.00 E-value=23 Score=27.90 Aligned_cols=79 Identities=18% Similarity=0.232 Sum_probs=42.5
Q ss_pred CCeEEEEEecCcCCchhHH--HHHHHHHhcccceEEEecch------------hh----HHHHHHHcCccHHHhcCCCCc
Q psy4713 3 QPKLILLFSGKRKSGKDFL--TDYLLERIGSQHCAIIRLSA------------PI----KSHWAKQNGLEMDKLLGATKY 64 (103)
Q Consensus 3 ~pklIiL~sGKrksGKDy~--a~~l~~~l~~~~~~iv~iS~------------pi----K~~yA~~~glDl~~LL~d~~Y 64 (103)
..+++|.+|| |||=. +..|++. + ..+..+-+-. +. =+..|+..|+.+.-+- +
T Consensus 9 ~~kVlVa~SG----GvDSsv~a~lL~~~-G-~~V~~v~~~~~~~~~~~~~c~~~~d~~~a~~va~~lGIp~~vv~----~ 78 (376)
T 2hma_A 9 KTRVVVGMSG----GVDSSVTALLLKEQ-G-YDVIGIFMKNWDDTDENGVCTATEDYKDVVAVADQIGIPYYSVN----F 78 (376)
T ss_dssp GSEEEEECCS----SHHHHHHHHHHHHT-T-CEEEEEEEECCCCCC----CHHHHHHHHHHHHHHHHTCCEEEEE----C
T ss_pred CCeEEEEEeC----HHHHHHHHHHHHHc-C-CcEEEEEEECCCcccccccCCCHHHHHHHHHHHHHhCCcEEEEe----C
Confidence 3689999999 99943 3333333 3 3444444311 11 1345666777654433 3
Q ss_pred HHHhHHHHHHHH----HHHhccChhhhHHHH
Q psy4713 65 KEKYRAEMITWS----EAERRKDNGCFIRSA 91 (103)
Q Consensus 65 KE~~R~~mi~wg----e~~R~~D~g~Fcr~~ 91 (103)
.+.|+...+..+ ...+..+|-+.|.+.
T Consensus 79 ~~~~~~~v~~~~l~~y~~G~tpnpc~~C~r~ 109 (376)
T 2hma_A 79 EKEYWDRVFEYFLAEYRAGRTPNPDVMCNKE 109 (376)
T ss_dssp HHHHHHHTHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhcCCCCChHHHHHHH
Confidence 344444433322 224566788999643
No 435
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=39.00 E-value=36 Score=21.21 Aligned_cols=24 Identities=17% Similarity=0.126 Sum_probs=20.0
Q ss_pred CeEEEEEecCcCCchhHHHHHHHH
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLE 27 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~ 27 (103)
+.+=|+|.|..+|||==+.+.+..
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHc
Confidence 456789999999999888887764
No 436
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=38.56 E-value=23 Score=26.08 Aligned_cols=24 Identities=21% Similarity=0.238 Sum_probs=20.1
Q ss_pred EEEEEecCcCCchhHHHHHHHHHh
Q psy4713 6 LILLFSGKRKSGKDFLTDYLLERI 29 (103)
Q Consensus 6 lIiL~sGKrksGKDy~a~~l~~~l 29 (103)
=++.|.|.+||||-=+...+.-.+
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhccC
Confidence 378899999999988888877655
No 437
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=38.46 E-value=21 Score=25.49 Aligned_cols=24 Identities=25% Similarity=0.080 Sum_probs=19.6
Q ss_pred EEEEecCcCCchhHHHHHHHHHhc
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIG 30 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~ 30 (103)
|+.+.|.+||||==+...+.-.+.
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl~~ 55 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLLDA 55 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 678999999999888887766554
No 438
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=38.39 E-value=24 Score=26.02 Aligned_cols=23 Identities=30% Similarity=0.325 Sum_probs=19.9
Q ss_pred EEEEEecCcCCchhHHHHHHHHH
Q psy4713 6 LILLFSGKRKSGKDFLTDYLLER 28 (103)
Q Consensus 6 lIiL~sGKrksGKDy~a~~l~~~ 28 (103)
=|+.+.|.+||||-=+...+.-.
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 37889999999999888888776
No 439
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=38.35 E-value=1e+02 Score=22.29 Aligned_cols=42 Identities=14% Similarity=0.129 Sum_probs=30.1
Q ss_pred EEEecCcCCchhHHHHHHHHHh---cccceEEEecchhhHHHHHH
Q psy4713 8 LLFSGKRKSGKDFLTDYLLERI---GSQHCAIIRLSAPIKSHWAK 49 (103)
Q Consensus 8 iL~sGKrksGKDy~a~~l~~~l---~~~~~~iv~iS~piK~~yA~ 49 (103)
+++.+..|+||=+++-.+.... ....+-||-=+-++-.+++.
T Consensus 26 ~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P~~~L~~q~~~ 70 (494)
T 1wp9_A 26 CLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAE 70 (494)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSSHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHH
Confidence 5788999999999998886655 23456666555566666666
No 440
>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1
Probab=38.35 E-value=67 Score=24.01 Aligned_cols=45 Identities=13% Similarity=0.052 Sum_probs=31.2
Q ss_pred EEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHHHcCcc
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQNGLE 54 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~~~glD 54 (103)
-|||+| . .|=...+-.+...+|...+.++. +.+-|.++|++.|+|
T Consensus 193 ~VlV~G-a-G~vG~~a~qlak~~Ga~~Vi~~~-~~~~~~~~a~~lGa~ 237 (371)
T 1f8f_A 193 SFVTWG-A-GAVGLSALLAAKVCGASIIIAVD-IVESRLELAKQLGAT 237 (371)
T ss_dssp EEEEES-C-SHHHHHHHHHHHHHTCSEEEEEE-SCHHHHHHHHHHTCS
T ss_pred EEEEEC-C-CHHHHHHHHHHHHcCCCeEEEEC-CCHHHHHHHHHcCCC
Confidence 356678 3 46678888888887743333333 357799999999986
No 441
>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*
Probab=38.31 E-value=61 Score=24.26 Aligned_cols=45 Identities=16% Similarity=-0.006 Sum_probs=31.6
Q ss_pred EEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHHHcCcc
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQNGLE 54 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~~~glD 54 (103)
-|||+| . .|=..++-.+++.+|...+.++. +.+-|.++|++.|+|
T Consensus 194 ~VlV~G-a-G~vG~~aiqlak~~Ga~~Vi~~~-~~~~~~~~a~~lGa~ 238 (373)
T 1p0f_A 194 TCAVFG-L-GGVGFSAIVGCKAAGASRIIGVG-THKDKFPKAIELGAT 238 (373)
T ss_dssp EEEEEC-C-SHHHHHHHHHHHHHTCSEEEEEC-SCGGGHHHHHHTTCS
T ss_pred EEEEEC-C-CHHHHHHHHHHHHcCCCeEEEEC-CCHHHHHHHHHcCCc
Confidence 356678 3 57788888888888743333333 357799999999986
No 442
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=38.27 E-value=27 Score=24.53 Aligned_cols=24 Identities=25% Similarity=0.459 Sum_probs=20.4
Q ss_pred CeEEEEEecCcCCchhHHHHHHHH
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLE 27 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~ 27 (103)
+.+-|+|.|..+|||==+.+.+..
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~ 44 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILR 44 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHhC
Confidence 467789999999999988888864
No 443
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=38.20 E-value=39 Score=21.73 Aligned_cols=24 Identities=17% Similarity=0.217 Sum_probs=19.5
Q ss_pred CeEEEEEecCcCCchhHHHHHHHH
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLE 27 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~ 27 (103)
+...|+|-|.+++||==+.+.+..
T Consensus 2 ~~~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 2 KSYEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHC
T ss_pred CccEEEEECCCCCCHHHHHHHHhC
Confidence 356788999999999877777764
No 444
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=38.16 E-value=12 Score=33.97 Aligned_cols=15 Identities=40% Similarity=0.729 Sum_probs=10.3
Q ss_pred EEEEecCcCCchhHH
Q psy4713 7 ILLFSGKRKSGKDFL 21 (103)
Q Consensus 7 IiL~sGKrksGKDy~ 21 (103)
+++|||-|||||-=+
T Consensus 48 lvv~tG~SGSGKSSL 62 (993)
T 2ygr_A 48 LIVFTGLSGSGKSSL 62 (993)
T ss_dssp EEEEEESTTSSHHHH
T ss_pred EEEEECCCCCcHHHH
Confidence 466788888888533
No 445
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=38.05 E-value=34 Score=22.49 Aligned_cols=25 Identities=24% Similarity=0.351 Sum_probs=19.8
Q ss_pred CCeEEEEEecCcCCchhHHHHHHHH
Q psy4713 3 QPKLILLFSGKRKSGKDFLTDYLLE 27 (103)
Q Consensus 3 ~pklIiL~sGKrksGKDy~a~~l~~ 27 (103)
.+.+-|+|-|..++||==+.+.+..
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~ 38 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLAS 38 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCC
T ss_pred CCceEEEEECCCCCCHHHHHHHHhc
Confidence 5678899999999999766665543
No 446
>2eq8_C Pyruvate dehydrogenase complex, dihydrolipoamide acetyltransferase E2 component; protein-protein complex, oxidoreductase; HET: FAD; 1.94A {Thermus thermophilus}
Probab=37.91 E-value=19 Score=19.41 Aligned_cols=24 Identities=25% Similarity=0.415 Sum_probs=20.2
Q ss_pred hhhHHHHHHHcCccHHHhcCCCCc
Q psy4713 41 APIKSHWAKQNGLEMDKLLGATKY 64 (103)
Q Consensus 41 ~piK~~yA~~~glDl~~LL~d~~Y 64 (103)
.|.-+..|.++|+|+..+-..++-
T Consensus 3 sP~ar~la~e~gidl~~v~gtG~~ 26 (40)
T 2eq8_C 3 APSIRRLARELGVDLTRLRGTGLA 26 (40)
T ss_dssp CHHHHHHHHHHTCCGGGCCCCSTT
T ss_pred ChHHHHHHHHhCCChhhcCCCCCC
Confidence 477788999999999998877765
No 447
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=37.85 E-value=12 Score=33.87 Aligned_cols=15 Identities=33% Similarity=0.596 Sum_probs=11.7
Q ss_pred EEEEecCcCCchhHH
Q psy4713 7 ILLFSGKRKSGKDFL 21 (103)
Q Consensus 7 IiL~sGKrksGKDy~ 21 (103)
+++|||-|||||-=+
T Consensus 46 lvv~tG~SGSGKSSL 60 (972)
T 2r6f_A 46 LVVLTGLSGSGKSSL 60 (972)
T ss_dssp EEEEEESTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 577899999999543
No 448
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=37.65 E-value=26 Score=23.35 Aligned_cols=26 Identities=31% Similarity=0.296 Sum_probs=18.7
Q ss_pred CCCeEEEEEecCcCCchhHHHHHHHH
Q psy4713 2 TQPKLILLFSGKRKSGKDFLTDYLLE 27 (103)
Q Consensus 2 ~~pklIiL~sGKrksGKDy~a~~l~~ 27 (103)
..+.+-|+|-|..++||==+.+.+..
T Consensus 20 ~~~~~ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 20 WNKHGKLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp ----CEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCccEEEEECCCCCCHHHHHHHHhc
Confidence 34667789999999999877777764
No 449
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=37.59 E-value=36 Score=22.05 Aligned_cols=25 Identities=28% Similarity=0.335 Sum_probs=20.6
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHH
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLER 28 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~ 28 (103)
+.+-|+|-|..+|||==+.+.|...
T Consensus 20 ~~~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 20 TEYKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceeEEEEECcCCCCHHHHHHHHHcC
Confidence 4577889999999998888887654
No 450
>2d00_A V-type ATP synthase subunit F; V-ATPase, CHEY, FRET, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.149.1.1 PDB: 3a5c_H* 3a5d_H 3j0j_H*
Probab=37.53 E-value=27 Score=23.19 Aligned_cols=28 Identities=14% Similarity=0.375 Sum_probs=23.3
Q ss_pred CeEEEEEecCc---CC--chhHHHHHHHHHhcc
Q psy4713 4 PKLILLFSGKR---KS--GKDFLTDYLLERIGS 31 (103)
Q Consensus 4 pklIiL~sGKr---ks--GKDy~a~~l~~~l~~ 31 (103)
.++||.|-++. ++ ||||+.+...+.+|.
T Consensus 73 ~P~Il~IPs~~~~~g~~~~~~~i~~~V~~aiG~ 105 (109)
T 2d00_A 73 LPVLLPIAGLKEAFQGHDVEGYMRELVRKTIGF 105 (109)
T ss_dssp CCEEEEESCGGGGGSSSCHHHHHHHHHHHHHSC
T ss_pred CeEEEEECCCcccCCCcchHHHHHHHHHHHhCC
Confidence 45788888888 55 899999999998874
No 451
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=37.35 E-value=25 Score=25.43 Aligned_cols=24 Identities=17% Similarity=0.213 Sum_probs=20.0
Q ss_pred EEEEecCcCCchhHHHHHHHHHhc
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIG 30 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~ 30 (103)
|+.+.|.+||||-=+...+.-.+.
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl~~ 57 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGLVR 57 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 788999999999888888776654
No 452
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=37.30 E-value=34 Score=21.90 Aligned_cols=23 Identities=26% Similarity=0.238 Sum_probs=19.4
Q ss_pred CeEEEEEecCcCCchhHHHHHHH
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLL 26 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~ 26 (103)
+.+-|+|-|..++||==+.+.+.
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~ 27 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFV 27 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHH
T ss_pred ceEEEEEECcCCCCHHHHHHHHH
Confidence 45778999999999988777776
No 453
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=37.24 E-value=37 Score=22.34 Aligned_cols=25 Identities=16% Similarity=0.155 Sum_probs=20.1
Q ss_pred CCeEEEEEecCcCCchhHHHHHHHH
Q psy4713 3 QPKLILLFSGKRKSGKDFLTDYLLE 27 (103)
Q Consensus 3 ~pklIiL~sGKrksGKDy~a~~l~~ 27 (103)
.+.+=|+|.|..++||==+.+.|..
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~ 30 (203)
T 1zbd_A 6 DYMFKILIIGNSSVGKTSFLFRYAD 30 (203)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHT
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhc
Confidence 4556789999999999887777754
No 454
>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1
Probab=37.22 E-value=70 Score=24.19 Aligned_cols=45 Identities=13% Similarity=0.293 Sum_probs=32.0
Q ss_pred EEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHHHcCcc
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQNGLE 54 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~~~glD 54 (103)
-|||+| . .|=...+-.++..+|..++.++.. .+-|.+++++.|+|
T Consensus 198 ~VlV~G-a-G~vG~~aiqlak~~Ga~~Vi~~~~-~~~~~~~~~~lGa~ 242 (380)
T 1vj0_A 198 TVVIQG-A-GPLGLFGVVIARSLGAENVIVIAG-SPNRLKLAEEIGAD 242 (380)
T ss_dssp EEEEEC-C-SHHHHHHHHHHHHTTBSEEEEEES-CHHHHHHHHHTTCS
T ss_pred EEEEEC-c-CHHHHHHHHHHHHcCCceEEEEcC-CHHHHHHHHHcCCc
Confidence 578899 4 577888888888876323333332 56799999999986
No 455
>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A
Probab=37.14 E-value=34 Score=22.89 Aligned_cols=24 Identities=8% Similarity=0.104 Sum_probs=17.6
Q ss_pred EEEec--CcCCchhHHHHHHHHHhcc
Q psy4713 8 LLFSG--KRKSGKDFLTDYLLERIGS 31 (103)
Q Consensus 8 iL~sG--KrksGKDy~a~~l~~~l~~ 31 (103)
|+++| +.+.||++.++.+.+.-..
T Consensus 147 vli~~~~~~g~~~g~~~~~i~~~~~~ 172 (237)
T 3cwo_X 147 ILLTSIDRDGTKSGYDTEMIRFVRPL 172 (237)
T ss_dssp EEEEETTTTTCCSCCCHHHHHHHGGG
T ss_pred EEEEecCCCCccccccHHHHHHHHHh
Confidence 34455 9999999988777776544
No 456
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=37.12 E-value=88 Score=20.58 Aligned_cols=42 Identities=14% Similarity=0.243 Sum_probs=25.5
Q ss_pred EEEecCcCCchhHHHHHHH-HHhc-------ccceEEEecchhhHHHHHH
Q psy4713 8 LLFSGKRKSGKDFLTDYLL-ERIG-------SQHCAIIRLSAPIKSHWAK 49 (103)
Q Consensus 8 iL~sGKrksGKDy~a~~l~-~~l~-------~~~~~iv~iS~piK~~yA~ 49 (103)
+++.+..||||=.++-... ..+. ...+-|+-=+..+-.++++
T Consensus 41 ~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~L~~q~~~ 90 (207)
T 2gxq_A 41 LIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVAS 90 (207)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHHHHHHHHH
T ss_pred EEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHHHHHHHHH
Confidence 6788999999999855543 4332 1345555444445455554
No 457
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=37.09 E-value=25 Score=26.66 Aligned_cols=27 Identities=22% Similarity=0.283 Sum_probs=22.8
Q ss_pred eEEEEEecCcCCchhHHHHHHHHHhcc
Q psy4713 5 KLILLFSGKRKSGKDFLTDYLLERIGS 31 (103)
Q Consensus 5 klIiL~sGKrksGKDy~a~~l~~~l~~ 31 (103)
.-.+.|.|.+||||==++..|...+..
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~ 196 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNT 196 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTC
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 346789999999999999999888753
No 458
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=36.88 E-value=33 Score=28.43 Aligned_cols=27 Identities=26% Similarity=0.561 Sum_probs=22.9
Q ss_pred CCeEEEEEecCcCCchhHHHHHHHHHh
Q psy4713 3 QPKLILLFSGKRKSGKDFLTDYLLERI 29 (103)
Q Consensus 3 ~pklIiL~sGKrksGKDy~a~~l~~~l 29 (103)
.|-.||-|.|..++||-|+.|.+...+
T Consensus 65 ~~v~vvsv~G~~~~gks~l~N~ll~~~ 91 (457)
T 4ido_A 65 KEVVAVSVAGAFRKGKSFLMDFMLRYM 91 (457)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHHHHH
T ss_pred CceEEEEEECCCCCchhHHHHHHHHHh
Confidence 467788899999999999999886554
No 459
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=36.68 E-value=21 Score=23.94 Aligned_cols=23 Identities=17% Similarity=0.210 Sum_probs=18.1
Q ss_pred CeEEEEEecCcCCchhHHHHHHH
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLL 26 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~ 26 (103)
+.+=|+|.|..++||==+.+.|.
T Consensus 10 ~~~ki~vvG~~~~GKSsli~~l~ 32 (218)
T 4djt_A 10 LTYKICLIGDGGVGKTTYINRVL 32 (218)
T ss_dssp CEEEEEEECCTTSSHHHHHCBCT
T ss_pred CccEEEEECCCCCCHHHHHHHHh
Confidence 45778899999999976666554
No 460
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=36.51 E-value=46 Score=21.41 Aligned_cols=24 Identities=17% Similarity=0.217 Sum_probs=20.5
Q ss_pred CeEEEEEecCcCCchhHHHHHHHH
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLE 27 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~ 27 (103)
+++.|+|-|..++||==+.+.+..
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 567899999999999888877765
No 461
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=36.32 E-value=24 Score=22.60 Aligned_cols=24 Identities=25% Similarity=0.275 Sum_probs=19.3
Q ss_pred CCeEEEEEecCcCCchhHHHHHHH
Q psy4713 3 QPKLILLFSGKRKSGKDFLTDYLL 26 (103)
Q Consensus 3 ~pklIiL~sGKrksGKDy~a~~l~ 26 (103)
++++-|+|.|..+|||==+.+.+.
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTC
T ss_pred CCccEEEEECCCCCCHHHHHHHHh
Confidence 578889999999999976665554
No 462
>2eq7_C 2-oxoglutarate dehydrogenase E2 component; protein-protein complex, oxidoreductase; HET: FAD NAD; 1.80A {Thermus thermophilus}
Probab=36.30 E-value=18 Score=19.55 Aligned_cols=24 Identities=13% Similarity=0.230 Sum_probs=19.8
Q ss_pred hhhHHHHHHHcCccHHHhcCCCCc
Q psy4713 41 APIKSHWAKQNGLEMDKLLGATKY 64 (103)
Q Consensus 41 ~piK~~yA~~~glDl~~LL~d~~Y 64 (103)
.|.-+..|.++|+|+..+-..++-
T Consensus 3 sP~ar~la~e~gidl~~v~gtG~~ 26 (40)
T 2eq7_C 3 MPAAERLMQEKGVSPAEVQGTGLG 26 (40)
T ss_dssp CHHHHHHHHHTTCCTTTSCCCSSS
T ss_pred CcHHHHHHHHhCCChhhcCCCCCC
Confidence 477788999999999988777654
No 463
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=36.15 E-value=24 Score=25.47 Aligned_cols=24 Identities=21% Similarity=0.300 Sum_probs=19.9
Q ss_pred EEEEecCcCCchhHHHHHHHHHhc
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIG 30 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~ 30 (103)
|+.+.|.+||||-=+...+.-.+.
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl~~ 60 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTYLK 60 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 678899999999888888776654
No 464
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=36.14 E-value=30 Score=23.06 Aligned_cols=25 Identities=36% Similarity=0.437 Sum_probs=18.5
Q ss_pred CCeEEEEEecCcCCchhHHHHHHHH
Q psy4713 3 QPKLILLFSGKRKSGKDFLTDYLLE 27 (103)
Q Consensus 3 ~pklIiL~sGKrksGKDy~a~~l~~ 27 (103)
.+.+-|+|.|..++||==+.+.+..
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~ 29 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLT 29 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4567789999999999877777664
No 465
>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0
Probab=36.02 E-value=80 Score=19.76 Aligned_cols=55 Identities=11% Similarity=0.149 Sum_probs=33.6
Q ss_pred CeEEEEEecCcCCchhHHHHHH------HHHhcccceEEEecc----hhhHHHHHHHcCccHHHhcCC
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYL------LERIGSQHCAIIRLS----APIKSHWAKQNGLEMDKLLGA 61 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l------~~~l~~~~~~iv~iS----~piK~~yA~~~glDl~~LL~d 61 (103)
..+||.|.+-.| + +|...+ .+.+....+.++.|+ ...-++|++.+|+++.-+.++
T Consensus 35 k~vlv~f~~~~C-~--~C~~~~~~l~~l~~~~~~~~v~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~ 99 (165)
T 3or5_A 35 KAYIVNFFATWC-P--PCRSEIPDMVQVQKTWASRGFTFVGIAVNEQLPNVKNYMKTQGIIYPVMMAT 99 (165)
T ss_dssp CEEEEEEECTTS-H--HHHHHHHHHHHHHHHHTTTTEEEEEEECSCCHHHHHHHHHHHTCCSCEEECC
T ss_pred CEEEEEEEcCcC-H--HHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHHHHcCCCCceEecC
Confidence 345566665444 3 476543 333333458888886 345578889999988765544
No 466
>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1
Probab=35.92 E-value=74 Score=24.03 Aligned_cols=45 Identities=16% Similarity=0.201 Sum_probs=31.8
Q ss_pred EEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHHHcCcc
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQNGLE 54 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~~~glD 54 (103)
-|||.| . .|=..++=.+++.+|..++.++. +.+-|.++|++.|+|
T Consensus 188 ~VlV~G-a-G~vG~~aiqlAk~~Ga~~Vi~~~-~~~~~~~~a~~lGa~ 232 (398)
T 1kol_A 188 TVYVAG-A-GPVGLAAAASARLLGAAVVIVGD-LNPARLAHAKAQGFE 232 (398)
T ss_dssp EEEEEC-C-SHHHHHHHHHHHHTTCSEEEEEE-SCHHHHHHHHHTTCE
T ss_pred EEEEEC-C-cHHHHHHHHHHHHCCCCeEEEEc-CCHHHHHHHHHcCCc
Confidence 356788 3 57788888888887743333333 356789999999996
No 467
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=35.91 E-value=35 Score=22.06 Aligned_cols=25 Identities=24% Similarity=0.307 Sum_probs=20.2
Q ss_pred CCeEEEEEecCcCCchhHHHHHHHH
Q psy4713 3 QPKLILLFSGKRKSGKDFLTDYLLE 27 (103)
Q Consensus 3 ~pklIiL~sGKrksGKDy~a~~l~~ 27 (103)
++.+-|+|.|..++||==+.+.+..
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~ 40 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNG 40 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTT
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhc
Confidence 4678899999999999888777753
No 468
>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}
Probab=35.89 E-value=63 Score=24.30 Aligned_cols=45 Identities=16% Similarity=0.073 Sum_probs=31.8
Q ss_pred EEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHHHcCccH
Q psy4713 8 LLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQNGLEM 55 (103)
Q Consensus 8 iL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~~~glDl 55 (103)
|||+|= .|=..++-.+.+.+|..++.++.. .+-|.++|++.|+|.
T Consensus 197 VlV~Ga--G~vG~~a~q~a~~~Ga~~Vi~~~~-~~~~~~~a~~lGa~~ 241 (378)
T 3uko_A 197 VAIFGL--GTVGLAVAEGAKTAGASRIIGIDI-DSKKYETAKKFGVNE 241 (378)
T ss_dssp EEEECC--SHHHHHHHHHHHHHTCSCEEEECS-CTTHHHHHHTTTCCE
T ss_pred EEEECC--CHHHHHHHHHHHHcCCCeEEEEcC-CHHHHHHHHHcCCcE
Confidence 566784 567788888888887433443332 567899999999873
No 469
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=35.85 E-value=26 Score=25.75 Aligned_cols=24 Identities=25% Similarity=0.293 Sum_probs=20.1
Q ss_pred EEEEecCcCCchhHHHHHHHHHhc
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIG 30 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~ 30 (103)
++.+.|.+||||-=+...+.-.+.
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~~ 51 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMTS 51 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 788999999999888888776653
No 470
>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*
Probab=35.77 E-value=73 Score=23.42 Aligned_cols=44 Identities=18% Similarity=0.251 Sum_probs=31.6
Q ss_pred EEEEecCcCCchhHHHHHHHHHhcccceEEEec-chhhHHHHHHHcCccH
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRL-SAPIKSHWAKQNGLEM 55 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~i-S~piK~~yA~~~glDl 55 (103)
.|||+|= .|=..++-.+....|. +|+-+ +.+-|.+++++.|+|.
T Consensus 169 ~VlV~Ga--G~vG~~a~qla~~~Ga---~Vi~~~~~~~~~~~~~~lGa~~ 213 (340)
T 3s2e_A 169 WVVISGI--GGLGHVAVQYARAMGL---RVAAVDIDDAKLNLARRLGAEV 213 (340)
T ss_dssp EEEEECC--STTHHHHHHHHHHTTC---EEEEEESCHHHHHHHHHTTCSE
T ss_pred EEEEECC--CHHHHHHHHHHHHCCC---eEEEEeCCHHHHHHHHHcCCCE
Confidence 3566884 5667888888888774 44444 4578999999999873
No 471
>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A
Probab=35.44 E-value=80 Score=23.52 Aligned_cols=45 Identities=16% Similarity=0.235 Sum_probs=31.2
Q ss_pred EEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHHHcCcc
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQNGLE 54 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~~~glD 54 (103)
-|||+| . .|=...+-.+...+|..++.++. +.+-|.+++++.|+|
T Consensus 174 ~VlV~G-a-G~vG~~aiqlak~~Ga~~Vi~~~-~~~~~~~~a~~lGa~ 218 (356)
T 1pl8_A 174 KVLVCG-A-GPIGMVTLLVAKAMGAAQVVVTD-LSATRLSKAKEIGAD 218 (356)
T ss_dssp EEEEEC-C-SHHHHHHHHHHHHTTCSEEEEEE-SCHHHHHHHHHTTCS
T ss_pred EEEEEC-C-CHHHHHHHHHHHHcCCCEEEEEC-CCHHHHHHHHHhCCC
Confidence 356678 3 46678888888887743344443 356788999999987
No 472
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=35.39 E-value=44 Score=21.68 Aligned_cols=25 Identities=16% Similarity=0.163 Sum_probs=20.5
Q ss_pred CCeEEEEEecCcCCchhHHHHHHHH
Q psy4713 3 QPKLILLFSGKRKSGKDFLTDYLLE 27 (103)
Q Consensus 3 ~pklIiL~sGKrksGKDy~a~~l~~ 27 (103)
.+.+=|+|.|..+|||==+.+.|..
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHc
Confidence 3557789999999999888887765
No 473
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=35.28 E-value=27 Score=26.06 Aligned_cols=25 Identities=20% Similarity=0.233 Sum_probs=21.0
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHh
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERI 29 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l 29 (103)
|. +.+|+|.+||||==+.+.+.-.+
T Consensus 24 ~g-~~~i~G~NGsGKS~ll~ai~~ll 48 (322)
T 1e69_A 24 DR-VTAIVGPNGSGKSNIIDAIKWVF 48 (322)
T ss_dssp SS-EEEEECCTTTCSTHHHHHHHHTS
T ss_pred CC-cEEEECCCCCcHHHHHHHHHHHh
Confidence 44 88999999999999999987444
No 474
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=35.11 E-value=38 Score=22.33 Aligned_cols=25 Identities=16% Similarity=0.216 Sum_probs=20.4
Q ss_pred CCeEEEEEecCcCCchhHHHHHHHH
Q psy4713 3 QPKLILLFSGKRKSGKDFLTDYLLE 27 (103)
Q Consensus 3 ~pklIiL~sGKrksGKDy~a~~l~~ 27 (103)
++.+=|+|.|..++||==+.+.+..
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~ 45 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQ 45 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCceEEEEECcCCCCHHHHHHHHhc
Confidence 3567799999999999888777764
No 475
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=35.09 E-value=28 Score=25.62 Aligned_cols=24 Identities=33% Similarity=0.393 Sum_probs=19.9
Q ss_pred EEEEecCcCCchhHHHHHHHHHhc
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIG 30 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~ 30 (103)
|+.+.|.+||||-=+...+.-.+.
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl~~ 58 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGLIE 58 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 788999999999888888776553
No 476
>2der_A TRNA-specific 2-thiouridylase MNMA; protein-RNA complex, transferase/RNA complex; 3.10A {Escherichia coli} PDB: 2det_A 2deu_A*
Probab=35.07 E-value=54 Score=25.91 Aligned_cols=79 Identities=18% Similarity=0.220 Sum_probs=44.9
Q ss_pred CCeEEEEEecCcCCchhH--HHHHHHHHhcccceEEEecc------------hh----hHHHHHHHcCccHHHhcCCCCc
Q psy4713 3 QPKLILLFSGKRKSGKDF--LTDYLLERIGSQHCAIIRLS------------AP----IKSHWAKQNGLEMDKLLGATKY 64 (103)
Q Consensus 3 ~pklIiL~sGKrksGKDy--~a~~l~~~l~~~~~~iv~iS------------~p----iK~~yA~~~glDl~~LL~d~~Y 64 (103)
..+++|.+|| |||= ++.+|++. + ..+..+-+. .+ .=+..|+..|+.+.-+- +
T Consensus 17 ~~kVvVa~SG----GvDSsv~a~lL~~~-G-~~V~~v~~~~~~~~~~~~~~~s~~d~~~a~~va~~LGIp~~vvd----~ 86 (380)
T 2der_A 17 AKKVIVGMSG----GVDSSVSAWLLQQQ-G-YQVEGLFMKNWEEDDGEEYCTAAADLADAQAVCDKLGIELHTVN----F 86 (380)
T ss_dssp CCEEEEECCS----CSTTHHHHHHHHTT-C-CEEEEEEEECCCCCSHHHHHHHHHHHHHHHHHHHHHTCCEEEEE----C
T ss_pred CCEEEEEEEC----hHHHHHHHHHHHHc-C-CeEEEEEEEcCccccccCCCCCHHHHHHHHHHHHHcCCcEEEEe----C
Confidence 3589999999 9994 33444433 4 444444442 01 11345666777654432 4
Q ss_pred HHHhHHHHHHHHH----HHhccChhhhHHHH
Q psy4713 65 KEKYRAEMITWSE----AERRKDNGCFIRSA 91 (103)
Q Consensus 65 KE~~R~~mi~wge----~~R~~D~g~Fcr~~ 91 (103)
.|.|+..++..+- ..+..+|-++|...
T Consensus 87 ~~~f~~~v~~~~~~ey~~G~tpnpc~~Cnr~ 117 (380)
T 2der_A 87 AAEYWDNVFELFLAEYKAGRTPNPDILCNKE 117 (380)
T ss_dssp HHHHHHHTHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHcCCCCChhHHHHHH
Confidence 4566655554432 23566888999864
No 477
>3aon_B V-type sodium ATPase subunit G; V-ATPase, coiled-coil, alpha/beta fold, hydrol Na(+)-ATPase, NTPA3-NTPB3, NTPC, central AXIS; HET: MSE; 2.00A {Enterococcus hirae}
Probab=35.04 E-value=31 Score=23.26 Aligned_cols=28 Identities=14% Similarity=0.350 Sum_probs=24.6
Q ss_pred CeEEEEEecCcCC---chhHHHHHHHHHhcc
Q psy4713 4 PKLILLFSGKRKS---GKDFLTDYLLERIGS 31 (103)
Q Consensus 4 pklIiL~sGKrks---GKDy~a~~l~~~l~~ 31 (103)
.++||.|-++.++ |||++.+...+.+|.
T Consensus 70 ~P~IveIPs~~g~~~~~~~~i~~~V~~aiG~ 100 (115)
T 3aon_B 70 TPAIILIPSHQGTLGIGLEEIQNSVEKAVGQ 100 (115)
T ss_dssp SCEEEEECBTTBCCSHHHHHHHHHHHHHTTC
T ss_pred CCEEEEECCCCCCCCccHHHHHHHHHHHhCc
Confidence 4689999999988 699999999999985
No 478
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=34.91 E-value=31 Score=25.32 Aligned_cols=24 Identities=38% Similarity=0.408 Sum_probs=20.2
Q ss_pred EEEEecCcCCchhHHHHHHHHHhc
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIG 30 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~ 30 (103)
|+.+.|.+||||-=+...+.-.+.
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIHR 56 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 688999999999888888776654
No 479
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=34.89 E-value=49 Score=20.76 Aligned_cols=30 Identities=20% Similarity=0.324 Sum_probs=24.7
Q ss_pred cchhhHHHHHHHcCccHHHhcCCCCcHHHhHHHHHHHHHHHhcc
Q psy4713 39 LSAPIKSHWAKQNGLEMDKLLGATKYKEKYRAEMITWSEAERRK 82 (103)
Q Consensus 39 iS~piK~~yA~~~glDl~~LL~d~~YKE~~R~~mi~wge~~R~~ 82 (103)
+|.+-+++-|..+||. +...-.||++.|.+
T Consensus 29 Ps~~er~eLA~~tgLt--------------~~qVkvWFqNRR~k 58 (66)
T 3nau_A 29 PDDAEVYRLIEVTGLA--------------RSEIKKWFSDHRYR 58 (66)
T ss_dssp CCHHHHHHHHHHHCCC--------------HHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCcC--------------HHHhhHhcccchhh
Confidence 6888889999999998 45677899999853
No 480
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=34.87 E-value=46 Score=20.74 Aligned_cols=24 Identities=25% Similarity=0.358 Sum_probs=19.2
Q ss_pred CeEEEEEecCcCCchhHHHHHHHH
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLE 27 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~ 27 (103)
..+=|+|.|..++||==+.+.+..
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVE 25 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHH
T ss_pred CceEEEEECcCCCCHHHHHHHHHh
Confidence 345689999999999888777763
No 481
>1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10
Probab=34.78 E-value=60 Score=21.18 Aligned_cols=57 Identities=7% Similarity=0.077 Sum_probs=33.6
Q ss_pred CeEEEEEecCcCCchhHHHHHH------HHHhcccceEEEecchhh-----HHHHHHHcCccHHHhcCCCC
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYL------LERIGSQHCAIIRLSAPI-----KSHWAKQNGLEMDKLLGATK 63 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l------~~~l~~~~~~iv~iS~pi-----K~~yA~~~glDl~~LL~d~~ 63 (103)
+.+||.|.+ .-|+ +|...+ .+.+....+.|+.||-.. -+.|++.+|++--.++.|..
T Consensus 61 k~vll~F~a-~~C~--~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~ 128 (186)
T 1jfu_A 61 KTLLVNLWA-TWCV--PCRKEMPALDELQGKLSGPNFEVVAINIDTRDPEKPKTFLKEANLTRLGYFNDQK 128 (186)
T ss_dssp SEEEEEEEC-TTCH--HHHHHHHHHHHHHHHHCBTTEEEEEEECCCSCTTHHHHHHHHTTCCTTCCEECTT
T ss_pred CEEEEEEEe-CCCH--hHHHHHHHHHHHHHHhccCCcEEEEEECCCCCHHHHHHHHHHcCCCCCceEECCc
Confidence 345555655 4455 786543 344443567787776432 27889999985334556654
No 482
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=34.47 E-value=41 Score=21.65 Aligned_cols=25 Identities=24% Similarity=0.283 Sum_probs=20.8
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHH
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLER 28 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~ 28 (103)
+++-|+|.|..++||==+.+.|...
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHcC
Confidence 4678999999999999888877653
No 483
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=34.44 E-value=43 Score=21.46 Aligned_cols=25 Identities=24% Similarity=0.368 Sum_probs=20.4
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHH
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLER 28 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~ 28 (103)
+.+=|+|.|..+|||==+.+.+...
T Consensus 9 ~~~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 9 FLFKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHcC
Confidence 4577899999999998888877643
No 484
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=34.24 E-value=52 Score=22.67 Aligned_cols=35 Identities=20% Similarity=0.471 Sum_probs=22.6
Q ss_pred CCCC-eEEEEEecCcCCchhHHHHHHHHHhcccceEEEe
Q psy4713 1 MTQP-KLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIR 38 (103)
Q Consensus 1 ~~~p-klIiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~ 38 (103)
|+.+ +++|.|+|+-+.| +...+...|.+..+-|+.
T Consensus 1 m~m~~~~~itv~~~DrpG---iva~vt~~La~~g~NI~d 36 (192)
T 1u8s_A 1 MSLTQHLVITAVGTDRPG---ICNEVVRLVTQAGCNIID 36 (192)
T ss_dssp -CCCEEEEEEEEEECCTT---HHHHHHHHHHHTTCEEEE
T ss_pred CCCCcEEEEEEEcCCCCc---HHHHHHHHHHHCCCCEEe
Confidence 5444 7999999999888 455555666554444433
No 485
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=34.18 E-value=1.3e+02 Score=21.83 Aligned_cols=42 Identities=12% Similarity=0.018 Sum_probs=26.3
Q ss_pred EEEecCcCCchhHHHHHHHHHh-c----ccceEEEecchhhHHHHHH
Q psy4713 8 LLFSGKRKSGKDFLTDYLLERI-G----SQHCAIIRLSAPIKSHWAK 49 (103)
Q Consensus 8 iL~sGKrksGKDy~a~~l~~~l-~----~~~~~iv~iS~piK~~yA~ 49 (103)
+++.+..||||=.++-...-.. . ...+-|+-=+-.+-.++++
T Consensus 61 ~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~ 107 (400)
T 1s2m_A 61 ILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQ 107 (400)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHH
T ss_pred EEEECCCCcHHHHHHHHHHHHHHhhccCCccEEEEcCCHHHHHHHHH
Confidence 6789999999998766544332 1 1345555545555555554
No 486
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=34.10 E-value=29 Score=25.51 Aligned_cols=24 Identities=17% Similarity=0.120 Sum_probs=19.8
Q ss_pred EEEEecCcCCchhHHHHHHHHHhc
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIG 30 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~ 30 (103)
|+.+.|.+||||==+...+.-.+.
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl~~ 57 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFLEK 57 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 678899999999888887776654
No 487
>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*
Probab=34.09 E-value=70 Score=24.15 Aligned_cols=45 Identities=18% Similarity=0.162 Sum_probs=32.2
Q ss_pred EEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHHHcCcc
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQNGLE 54 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~~~glD 54 (103)
-|||+|= .|=...+-.+...+|..++.++. +.+-|.++|++.|+|
T Consensus 185 ~VlV~Ga--G~vG~~aiqlak~~Ga~~Vi~~~-~~~~~~~~a~~lGa~ 229 (370)
T 4ej6_A 185 TVAILGG--GVIGLLTVQLARLAGATTVILST-RQATKRRLAEEVGAT 229 (370)
T ss_dssp EEEEECC--SHHHHHHHHHHHHTTCSEEEEEC-SCHHHHHHHHHHTCS
T ss_pred EEEEECC--CHHHHHHHHHHHHcCCCEEEEEC-CCHHHHHHHHHcCCC
Confidence 3566783 56778888888888743444443 457789999999987
No 488
>4hde_A SCO1/SENC family lipoprotein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; HET: MSE; 1.32A {Bacillus anthracis}
Probab=34.07 E-value=43 Score=22.42 Aligned_cols=38 Identities=11% Similarity=0.158 Sum_probs=23.5
Q ss_pred cceEEEecc-hhh------HHHHHHHcCccHHH--hcCCCCcHHHhH
Q psy4713 32 QHCAIIRLS-API------KSHWAKQNGLEMDK--LLGATKYKEKYR 69 (103)
Q Consensus 32 ~~~~iv~iS-~pi------K~~yA~~~glDl~~--LL~d~~YKE~~R 69 (103)
.++.+|+|| +|- =++|++.+|.|... +|....-.+..+
T Consensus 67 ~~v~~v~isvDp~~Dtp~~l~~y~~~~~~~~~~~~~ltg~~~~~~~~ 113 (170)
T 4hde_A 67 LDVQFVSFSVDPDLDKPENLKAFIQKFTEDTSNWNLLTGYSLEDITK 113 (170)
T ss_dssp CCCEEEEEESCTTTCCHHHHHHHHTTTCSCCTTEEEEBCSCHHHHHH
T ss_pred ccceeEeeecCcccccHHHHHHHHHHcCCCCCCceecCcccHHHHHH
Confidence 468888887 221 26899999988664 355444443333
No 489
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=34.06 E-value=38 Score=21.74 Aligned_cols=27 Identities=15% Similarity=0.324 Sum_probs=21.1
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhc
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIG 30 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~ 30 (103)
+.+=|+|-|..++||==+.+.+...+.
T Consensus 13 ~~~ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 13 INFKIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHTSC
T ss_pred cccEEEEECCCCCCHHHHHHHHHhhcc
Confidence 457789999999999877777765543
No 490
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=34.02 E-value=29 Score=26.03 Aligned_cols=25 Identities=16% Similarity=0.142 Sum_probs=19.9
Q ss_pred EEEEecCcCCchhHHHHHHHHHhcc
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIGS 31 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~~ 31 (103)
|+.|.|.+||||==+...+.-.+..
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl~~p 60 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGILKP 60 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCC
Confidence 6789999999998887777665543
No 491
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=33.98 E-value=48 Score=21.07 Aligned_cols=23 Identities=17% Similarity=0.138 Sum_probs=19.7
Q ss_pred eEEEEEecCcCCchhHHHHHHHH
Q psy4713 5 KLILLFSGKRKSGKDFLTDYLLE 27 (103)
Q Consensus 5 klIiL~sGKrksGKDy~a~~l~~ 27 (103)
.+=|+|.|..++||==+.+.|..
T Consensus 11 ~~ki~v~G~~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 11 LIKFLALGDSGVGKTSVLYQYTD 33 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhc
Confidence 57789999999999988887765
No 492
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=33.88 E-value=50 Score=21.60 Aligned_cols=25 Identities=16% Similarity=0.157 Sum_probs=20.6
Q ss_pred CCeEEEEEecCcCCchhHHHHHHHH
Q psy4713 3 QPKLILLFSGKRKSGKDFLTDYLLE 27 (103)
Q Consensus 3 ~pklIiL~sGKrksGKDy~a~~l~~ 27 (103)
.+.+=|+|.|..++||==+.+.+..
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~ 43 (191)
T 2a5j_A 19 SYLFKYIIIGDTGVGKSCLLLQFTD 43 (191)
T ss_dssp CEEEEEEEESSTTSSHHHHHHHHHH
T ss_pred CcceEEEEECcCCCCHHHHHHHHhc
Confidence 4567789999999999888887764
No 493
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=33.70 E-value=48 Score=21.60 Aligned_cols=24 Identities=17% Similarity=0.181 Sum_probs=19.6
Q ss_pred CeEEEEEecCcCCchhHHHHHHHH
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLE 27 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~ 27 (103)
+.+=|+|-|..++||==+.+.|..
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~ 47 (193)
T 2oil_A 24 FVFKVVLIGESGVGKTNLLSRFTR 47 (193)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHhc
Confidence 456789999999999887777764
No 494
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=33.68 E-value=30 Score=25.55 Aligned_cols=25 Identities=20% Similarity=0.143 Sum_probs=20.4
Q ss_pred EEEEEecCcCCchhHHHHHHHHHhc
Q psy4713 6 LILLFSGKRKSGKDFLTDYLLERIG 30 (103)
Q Consensus 6 lIiL~sGKrksGKDy~a~~l~~~l~ 30 (103)
=|+.|.|.+||||-=+...+.-.+.
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~Gl~~ 66 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIISTLIK 66 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3788999999999888888776654
No 495
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=33.53 E-value=47 Score=21.09 Aligned_cols=24 Identities=21% Similarity=0.229 Sum_probs=19.7
Q ss_pred CeEEEEEecCcCCchhHHHHHHHH
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLE 27 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~ 27 (103)
+.+=|+|-|..++||==+.+.+..
T Consensus 11 ~~~ki~v~G~~~~GKSsli~~l~~ 34 (181)
T 2efe_B 11 INAKLVLLGDVGAGKSSLVLRFVK 34 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHHc
Confidence 456789999999999888777764
No 496
>1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A
Probab=33.52 E-value=72 Score=20.17 Aligned_cols=54 Identities=22% Similarity=0.374 Sum_probs=33.9
Q ss_pred eEEEEEecCcCCchhHHHHHHHH------HhcccceEEEecchh---hHHHHHHHcCccHHHhcCC
Q psy4713 5 KLILLFSGKRKSGKDFLTDYLLE------RIGSQHCAIIRLSAP---IKSHWAKQNGLEMDKLLGA 61 (103)
Q Consensus 5 klIiL~sGKrksGKDy~a~~l~~------~l~~~~~~iv~iS~p---iK~~yA~~~glDl~~LL~d 61 (103)
.+||.|.+-..|+ .|...+.. .+....+.++.||-- .=++|++.+|+++. ++.|
T Consensus 38 ~vvl~F~~a~~C~--~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~-~~~d 100 (160)
T 1xvw_A 38 NVLLVFFPLAFTG--ICQGELDQLRDHLPEFENDDSAALAISVGPPPTHKIWATQSGFTFP-LLSD 100 (160)
T ss_dssp EEEEEECSCTTSS--HHHHHHHHHHHTGGGTSSSSEEEEEEESCCHHHHHHHHHHHTCCSC-EEEC
T ss_pred CEEEEEECCCCCC--chHHHHHHHHHHHHHHHHCCcEEEEEeCCCHHHHHHHHHhcCCCce-EEec
Confidence 4666676667777 78765432 222246777777632 33678888999876 4445
No 497
>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*
Probab=33.37 E-value=75 Score=23.78 Aligned_cols=45 Identities=16% Similarity=-0.072 Sum_probs=31.3
Q ss_pred EEEEecCcCCchhHHHHHHHHHhcccceEEEecchhhHHHHHHHcCcc
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQNGLE 54 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~~~~~~iv~iS~piK~~yA~~~glD 54 (103)
-|||+| . .|=...+-.+...+|..++.++. +.+-|.++|++.|+|
T Consensus 198 ~VlV~G-a-G~vG~~aiqlak~~Ga~~Vi~~~-~~~~~~~~a~~lGa~ 242 (376)
T 1e3i_A 198 TCAVFG-L-GCVGLSAIIGCKIAGASRIIAID-INGEKFPKAKALGAT 242 (376)
T ss_dssp EEEEEC-C-SHHHHHHHHHHHHTTCSEEEEEC-SCGGGHHHHHHTTCS
T ss_pred EEEEEC-C-CHHHHHHHHHHHHcCCCeEEEEc-CCHHHHHHHHHhCCc
Confidence 366778 3 57778888888887632333332 367799999999986
No 498
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=33.34 E-value=61 Score=24.67 Aligned_cols=35 Identities=17% Similarity=0.188 Sum_probs=25.6
Q ss_pred CeEEEEEecCcCCchhHHHHHHHHHhcc--cceEEEe
Q psy4713 4 PKLILLFSGKRKSGKDFLTDYLLERIGS--QHCAIIR 38 (103)
Q Consensus 4 pklIiL~sGKrksGKDy~a~~l~~~l~~--~~~~iv~ 38 (103)
+--++.|+|.+||||==+.+.|...+.. ..+.|+.
T Consensus 54 ~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~ 90 (337)
T 2qm8_A 54 RAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLA 90 (337)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEE
Confidence 4568999999999998888888766532 3444443
No 499
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=33.08 E-value=34 Score=24.95 Aligned_cols=24 Identities=25% Similarity=0.337 Sum_probs=20.0
Q ss_pred EEEEecCcCCchhHHHHHHHHHhc
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIG 30 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~ 30 (103)
|+.+.|.+||||==+...+.-.+.
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl~~ 58 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGFLK 58 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 788999999999888888776654
No 500
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=33.03 E-value=31 Score=25.56 Aligned_cols=24 Identities=21% Similarity=0.313 Sum_probs=19.6
Q ss_pred EEEEecCcCCchhHHHHHHHHHhc
Q psy4713 7 ILLFSGKRKSGKDFLTDYLLERIG 30 (103)
Q Consensus 7 IiL~sGKrksGKDy~a~~l~~~l~ 30 (103)
++.+.|.+||||==+...+.-.+.
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl~~ 62 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGYLS 62 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSSSC
T ss_pred EEEEECCCCCcHHHHHHHHhcCCC
Confidence 678999999999888777766553
Done!