RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4713
(103 letters)
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the
strand order 23145, walker A motif, cholesterol
biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Length = 202
Score = 116 bits (291), Expect = 2e-34
Identities = 45/93 (48%), Positives = 65/93 (69%)
Query: 4 PKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQNGLEMDKLLGATK 63
P+L+LLFSGKRKSGKDF+T+ L R+G+ CA++RLS P+K +A+++GL +LL +
Sbjct: 10 PRLVLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPLKEQYAQEHGLNFQRLLDTST 69
Query: 64 YKEKYRAEMITWSEAERRKDNGCFIRSAIEMAH 96
YKE +R +MI W E +R+ D G F R +E
Sbjct: 70 YKEAFRKDMIRWGEEKRQADPGFFCRKIVEGIS 102
>1dek_A Deoxynucleoside monophosphate kinase; transferase,
phosphotransferase; HET: DGP; 2.00A {Enterobacteria
phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Length = 241
Score = 28.7 bits (63), Expect = 0.24
Identities = 11/38 (28%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
Query: 7 ILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIK 44
++ SG ++SGKD D+++ + +L+ PIK
Sbjct: 3 LIFLSGVKRSGKDTTADFIMSNYSAVK---YQLAGPIK 37
>2w5y_A Histone-lysine N-methyltransferase HRX; transcription regulation,
chromosomal rearrangement, protein lysine
methyltransferase, proto-oncogene; HET: SAH; 2.00A {Homo
sapiens} PDB: 2w5z_A*
Length = 192
Score = 25.4 bits (56), Expect = 3.5
Identities = 6/27 (22%), Positives = 12/27 (44%), Gaps = 6/27 (22%)
Query: 68 YRAEMITWSEAERR------KDNGCFI 88
Y +I + ++R K GC++
Sbjct: 81 YAGNVIRSIQTDKREKYYDSKGIGCYM 107
>3m1r_A Formimidoylglutamase; structural genomics, PSI-2, protein structure
initiative, midwest center for structural genomics,
MCSG; HET: CAC; 2.20A {Bacillus subtilis}
Length = 322
Score = 25.3 bits (56), Expect = 4.3
Identities = 3/21 (14%), Positives = 7/21 (33%)
Query: 74 TWSEAERRKDNGCFIRSAIEM 94
+ + NG R ++
Sbjct: 158 VRNTEDGGPTNGTPFRRLLDE 178
>4ay1_A Chitinase-3-like protein 2; chilectin, lectin,
chitooligosaccharide, pseudochitinase, HY; HET: NAG;
1.95A {Homo sapiens}
Length = 365
Score = 25.3 bits (56), Expect = 4.7
Identities = 8/37 (21%), Positives = 12/37 (32%), Gaps = 8/37 (21%)
Query: 40 SAPIKSHWAKQNGL--------EMDKLLGATKYKEKY 68
S K + K L +MD G + + Y
Sbjct: 316 SMETKVQFLKNLNLGGAMIWSIDMDDFTGKSCNQGPY 352
>1wb0_A Chitinase 1, chitotriosidase 1; cyclopentapeptide inhibitors,
chitinase inhibitors, carbohyd metabolism, chitin
degradation, chitin-binding; HET: VR0 MEA; 1.65A {Homo
sapiens} SCOP: c.1.8.5 d.26.3.1 PDB: 1waw_A* 1guv_A
1lg2_A 1lg1_A 1lq0_A 1hki_A* 1hkj_A* 1hkm_A* 1hkk_A*
Length = 445
Score = 24.7 bits (54), Expect = 6.6
Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 8/37 (21%)
Query: 40 SAPIKSHWAKQNGL--------EMDKLLGATKYKEKY 68
S K + KQ GL ++D G + + +Y
Sbjct: 318 SFKTKVSYLKQKGLGGAMVWALDLDDFAGFSCNQGRY 354
>2f69_A Histone-lysine N-methyltransferase, H3 lysine-4 specific SET7; SET
domain, protein lysine methyltransferase, enzyme-
peptide-adohcy complex; HET: MLZ SAH; 1.30A {Homo
sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 3m53_A* 3m55_A*
3m54_A* 3m56_A* 3m58_A* 3m57_A* 3m59_A* 3m5a_A* 1xqh_A*
4e47_A* 1n6a_A* 1o9s_A* 3cbp_A* 3cbm_A* 3cbo_A* 3os5_A*
Length = 261
Score = 24.3 bits (52), Expect = 8.2
Identities = 7/24 (29%), Positives = 9/24 (37%), Gaps = 2/24 (8%)
Query: 68 YRAEMITWSEAERR--KDNGCFIR 89
Y IT E + R NG +
Sbjct: 140 YNGVRITHQEVDSRDWALNGNTLS 163
>3hna_A Histone-lysine N-methyltransferase, H3 lysine-9 specific 5; EHMT1,
structural genomics, SGC, structural genomics
consortium, alternative splicing, ANK repeat; HET: MLZ
SAH; 1.50A {Homo sapiens} PDB: 2rfi_A* 2igq_A* 3mo0_A*
3mo2_A* 3mo5_A* 3sw9_A* 3swc_A* 3fpd_A* 3k5k_A* 3nni_A*
3rjw_A* 2o8j_A*
Length = 287
Score = 24.5 bits (53), Expect = 9.1
Identities = 7/17 (41%), Positives = 13/17 (76%)
Query: 68 YRAEMITWSEAERRKDN 84
Y E+I+ SEA+ R+++
Sbjct: 176 YVGELISDSEADVREED 192
>1ejb_A Lumazine synthase; analysis, inhibitor complex, vitamin
biosynthesis transferase; HET: INJ; 1.85A {Saccharomyces
cerevisiae} SCOP: c.16.1.1 PDB: 2jfb_A
Length = 168
Score = 24.1 bits (53), Expect = 9.4
Identities = 5/12 (41%), Positives = 7/12 (58%)
Query: 90 SAIEMAHAMKKL 101
+A+EMA K
Sbjct: 155 AAVEMAVKFGKN 166
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA,
national P protein structural and functional analyses;
HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Length = 190
Score = 24.2 bits (53), Expect = 9.6
Identities = 6/30 (20%), Positives = 12/30 (40%)
Query: 4 PKLILLFSGKRKSGKDFLTDYLLERIGSQH 33
K+ + S K + L + + E I +
Sbjct: 157 DKVFIPISAKFGDNIERLKNRIFEVIRERQ 186
>2qw5_A Xylose isomerase-like TIM barrel; putative sugar phosphate
isomerase/epimerase; 1.78A {Anabaena variabilis atcc
29413}
Length = 335
Score = 24.3 bits (52), Expect = 9.7
Identities = 9/52 (17%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
Query: 47 WAKQNGLEMDKLLGATKYKEKYRAEMITWSEAERRKDNGCFIRSAIEMAHAM 98
+ GLE K+ R + + E+R++ +++S +++ A+
Sbjct: 73 YLDSEGLENVKISTNVGA---TRTFDPSSNYPEQRQEALEYLKSRVDITAAL 121
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.134 0.398
Gapped
Lambda K H
0.267 0.0741 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,574,941
Number of extensions: 82387
Number of successful extensions: 303
Number of sequences better than 10.0: 1
Number of HSP's gapped: 303
Number of HSP's successfully gapped: 14
Length of query: 103
Length of database: 6,701,793
Length adjustment: 68
Effective length of query: 35
Effective length of database: 4,803,165
Effective search space: 168110775
Effective search space used: 168110775
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.4 bits)