RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4713
         (103 letters)



>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId:
          562]}
          Length = 205

 Score = 25.2 bits (54), Expect = 1.5
 Identities = 11/75 (14%), Positives = 23/75 (30%), Gaps = 1/75 (1%)

Query: 3  QPKLILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQNGLEMDKLLGAT 62
          Q  L ++ S    +GK  L   LL+        +       +    + +G     +    
Sbjct: 1  QGTLYIV-SAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDE 59

Query: 63 KYKEKYRAEMITWSE 77
            +   R   +  +E
Sbjct: 60 FKEMISRDAFLEHAE 74


>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium
          tuberculosis [TaxId: 1773]}
          Length = 182

 Score = 25.0 bits (53), Expect = 2.2
 Identities = 9/42 (21%), Positives = 18/42 (42%)

Query: 6  LILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHW 47
           +++ SG    GK  +   L ERI + H ++   +   +   
Sbjct: 3  RVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRPGE 44


>d1cv8a_ d.3.1.1 (A:) Staphopain StpA {Staphylococcus aureus
          [TaxId: 1280]}
          Length = 173

 Score = 24.5 bits (53), Expect = 2.5
 Identities = 10/22 (45%), Positives = 11/22 (50%)

Query: 52 GLEMDKLLGATKYKEKYRAEMI 73
          G  M  LL AT    KY AE +
Sbjct: 25 GYTMSALLNATYNTNKYHAEAV 46


>d1pxva_ d.3.1.1 (A:) Staphopain SspB {Staphylococcus aureus
          [TaxId: 1280]}
          Length = 183

 Score = 23.7 bits (51), Expect = 4.2
 Identities = 10/22 (45%), Positives = 11/22 (50%)

Query: 52 GLEMDKLLGATKYKEKYRAEMI 73
          G  M  LL ATK  + Y A  I
Sbjct: 35 GFSMAALLNATKNTDTYNAHDI 56


>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase
           {Bacteriophage T4 [TaxId: 10665]}
          Length = 241

 Score = 23.7 bits (50), Expect = 4.8
 Identities = 14/98 (14%), Positives = 26/98 (26%), Gaps = 4/98 (4%)

Query: 6   LILLFSGKRKSGKDFLTDYLLERIGSQHCAIIRLSAPIKSHWAKQNGLEMDKLLGATKYK 65
            ++  SG ++SGKD   D+++           +L+ PIK                     
Sbjct: 2   KLIFLSGVKRSGKDTTADFIMSNYS---AVKYQLAGPIK-DALAYAWGVFAANTDYPCLT 57

Query: 66  EKYRAEMITWSEAERRKDNGCFIRSAIEMAHAMKKLLH 103
            K    +    E          I    +    +     
Sbjct: 58  RKEFEGIDYDRETNLNLTKLEVITIMEQAFCYLNGKSP 95


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.134    0.398 

Gapped
Lambda     K      H
   0.267   0.0442    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 388,559
Number of extensions: 15923
Number of successful extensions: 64
Number of sequences better than 10.0: 1
Number of HSP's gapped: 64
Number of HSP's successfully gapped: 13
Length of query: 103
Length of database: 2,407,596
Length adjustment: 64
Effective length of query: 39
Effective length of database: 1,528,876
Effective search space: 59626164
Effective search space used: 59626164
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.6 bits)