Query psy4716
Match_columns 334
No_of_seqs 270 out of 1955
Neff 6.2
Searched_HMMs 46136
Date Sat Aug 17 00:01:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4716.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4716hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0019|consensus 100.0 9.9E-77 2.1E-81 594.1 27.6 306 1-307 151-651 (656)
2 PTZ00272 heat shock protein 83 100.0 7.8E-75 1.7E-79 604.3 34.3 231 80-310 447-677 (701)
3 KOG0020|consensus 100.0 7.8E-75 1.7E-79 567.9 20.2 233 80-312 519-755 (785)
4 PTZ00130 heat shock protein 90 100.0 8E-72 1.7E-76 583.5 31.5 232 80-312 536-767 (814)
5 COG0326 HtpG Molecular chapero 100.0 1E-67 2.2E-72 537.2 28.8 212 80-301 410-622 (623)
6 PF00183 HSP90: Hsp90 protein; 100.0 2.6E-64 5.6E-69 514.2 25.8 234 78-311 272-505 (531)
7 PRK05218 heat shock protein 90 100.0 3.3E-59 7.1E-64 484.6 30.5 213 80-302 400-613 (613)
8 PRK14083 HSP90 family protein; 100.0 1.2E-49 2.6E-54 410.9 30.1 203 80-304 378-596 (601)
9 TIGR00585 mutl DNA mismatch re 93.9 0.051 1.1E-06 52.6 3.6 49 1-53 96-148 (312)
10 PF13589 HATPase_c_3: Histidin 91.9 0.11 2.5E-06 44.1 2.4 30 1-30 74-105 (137)
11 PF06112 Herpes_capsid: Gammah 74.1 3.5 7.5E-05 36.0 3.2 25 237-261 14-38 (147)
12 KOG0019|consensus 72.1 6.1 0.00013 41.8 5.0 77 81-157 270-346 (656)
13 PF12588 PSDC: Phophatidylseri 62.2 20 0.00044 31.1 5.5 56 245-303 2-62 (141)
14 TIGR01052 top6b DNA topoisomer 51.2 11 0.00025 39.0 2.6 58 1-58 105-175 (488)
15 PRK04184 DNA topoisomerase VI 43.2 20 0.00043 37.7 2.9 57 1-58 115-185 (535)
16 PRK00095 mutL DNA mismatch rep 40.2 33 0.00072 36.6 4.1 51 1-53 96-147 (617)
17 COG0323 MutL DNA mismatch repa 39.1 37 0.0008 36.5 4.2 41 12-53 107-149 (638)
18 PF03562 MltA: MltA specific i 35.1 26 0.00057 31.0 2.0 35 99-137 50-84 (158)
19 PRK05559 DNA topoisomerase IV 31.8 54 0.0012 35.2 4.0 58 1-59 119-180 (631)
20 PF08953 DUF1899: Domain of un 31.8 36 0.00079 25.6 2.0 19 25-43 45-63 (65)
21 COG1480 Predicted membrane-ass 31.1 26 0.00056 37.8 1.5 17 237-253 468-485 (700)
22 KOG0541|consensus 29.6 53 0.0011 29.3 2.9 37 112-148 70-110 (171)
23 PF04282 DUF438: Family of unk 29.2 1.3E+02 0.0027 23.2 4.6 31 271-301 36-66 (71)
24 COG4549 Uncharacterized protei 27.7 39 0.00085 30.2 1.8 97 2-106 13-112 (178)
25 COG4813 ThuA Trehalose utiliza 26.9 36 0.00079 31.3 1.5 21 235-255 126-146 (261)
26 cd01444 GlpE_ST GlpE sulfurtra 26.7 97 0.0021 23.4 3.8 49 81-133 45-94 (96)
27 cd01524 RHOD_Pyr_redox Member 26.6 1.3E+02 0.0028 22.8 4.4 47 83-133 42-88 (90)
28 PF09695 YtfJ_HI0045: Bacteria 25.8 54 0.0012 29.1 2.3 28 94-121 40-67 (160)
29 PF07429 Glyco_transf_56: 4-al 25.2 71 0.0015 31.9 3.3 45 108-156 296-340 (360)
30 PRK11162 mltA murein transglyc 23.8 47 0.001 33.2 1.8 30 102-135 151-180 (355)
31 PF03033 Glyco_transf_28: Glyc 23.7 1.5E+02 0.0033 23.9 4.7 50 97-152 2-54 (139)
32 PF04122 CW_binding_2: Putativ 23.7 3.2E+02 0.0069 21.0 6.3 55 92-149 24-79 (92)
33 COG4463 CtsR Transcriptional r 23.0 89 0.0019 27.3 3.0 71 191-280 44-114 (153)
34 TIGR01055 parE_Gneg DNA topois 22.0 71 0.0015 34.3 2.8 59 1-60 112-174 (625)
35 PRK14868 DNA topoisomerase VI 20.9 66 0.0014 35.5 2.3 53 1-54 122-188 (795)
36 cd03142 GATase1_ThuA Type 1 gl 20.7 2.7E+02 0.0058 25.8 6.0 109 112-253 28-139 (215)
37 smart00433 TOP2c Topoisomerase 20.5 1.1E+02 0.0024 32.5 3.9 55 1-57 83-141 (594)
No 1
>KOG0019|consensus
Probab=100.00 E-value=9.9e-77 Score=594.14 Aligned_cols=306 Identities=52% Similarity=0.820 Sum_probs=279.5
Q ss_pred CccceeeeeecCeeEEEeecCCCCceeeeeCCCCceEEeeCCCCCCccEEEEeecccccCchHHHHHhHhhhh-------
Q psy4716 1 MNGFYSAYLVADKVTVTSKHNDDEQYIWESSAGGSFTIKPDNSQPLGRLLVEKEREKELSEDEEEEKKEEEKE------- 73 (334)
Q Consensus 1 gvGfyS~f~Va~~v~v~tr~~~~~~~~w~s~~~g~~~i~~~~~~~~Gt~i~l~~~~~~~~~~~~~~~~~~~~~------- 73 (334)
||||||||||||+|+|+||++.+.+|.|+|+|+|+|+|..++.-.+||+|+||+++++..+.+++-+++--|+
T Consensus 151 GvGFYSaylVAdkV~V~tk~~~~e~y~Wes~~~gs~~v~~~~~~~rGTki~l~lKe~~~ey~ee~rikeiVKK~S~Fv~y 230 (656)
T KOG0019|consen 151 GVGFYSAFMVADRVVVTTRHPADEGLQWTSNGRGSYEIAEASGLRTGTKIVIHLKEGDCEFLEEKRIKEVVKKYSNFVSY 230 (656)
T ss_pred ccchhhhhhhhheeEEeeccCCCcceeeecCCCCceEEeeccCccccceEEeeehhhhhhhccHhHHHHHHhhccccccc
Confidence 8999999999999999999998889999999999999999999999999999999966665554443332110
Q ss_pred -------------------------------------------------------------------------hcc----
Q psy4716 74 -------------------------------------------------------------------------EDK---- 76 (334)
Q Consensus 74 -------------------------------------------------------------------------~~k---- 76 (334)
..|
T Consensus 231 PI~l~~ek~N~tKpiW~rnp~dit~eey~eFYksl~ndw~d~lav~hf~~eg~lefrail~vP~rap~~lF~~~kk~n~i 310 (656)
T KOG0019|consen 231 PIYLNGERVNNLKAIWTMNPKEVNEEEHEEFYKSVSGDWDDPLYVLHFKTDGPLSIRSIFYIPKRAPNSMFDMRKKKNGI 310 (656)
T ss_pred cchhhhhhhhccCcccccCchhhhHHHHHHHHHhhcccccchhhHhhhccccceEEEEEEeccccCcchhhhhhhccCce
Confidence 000
Q ss_pred --------------------------------------------------------------------------------
Q psy4716 77 -------------------------------------------------------------------------------- 76 (334)
Q Consensus 77 -------------------------------------------------------------------------------- 76 (334)
T Consensus 311 ~Ly~rrv~I~d~~~~lipe~l~fv~gvVdSeDlPLNiSremlQ~~~i~k~~rk~l~~k~l~~~~e~a~d~e~Y~kFy~~f 390 (656)
T KOG0019|consen 311 KLYARRVLITDDAGDLIPEWLRFVRGVVDSEDIPLNLSREMLQENAVLRKLRKVLPQKILEMFQDLAKDAEKYKKFFKNY 390 (656)
T ss_pred EEEEEEEecCchhHHHHHHHhchheeccccccCccchhHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence
Q ss_pred -------------------------------CCCCChhHHHHhccccCceEEEEeCCCHHHHhcChhHHHHHhCCcEEEe
Q psy4716 77 -------------------------------TPKLEDEDYVARMKENQKQIYYITGETKDQVANSSFVERVKKRGFEVIY 125 (334)
Q Consensus 77 -------------------------------~p~~tl~eYv~rmke~Qk~IYY~tg~s~~~~~~SP~lE~~k~kg~EVL~ 125 (334)
...++|++|+.||+++|++|||++|+|+.++++|||+|.++++|+||||
T Consensus 391 ~~~lk~gi~e~s~~~~k~~a~lLry~ss~s~~~~~Sl~dYv~rm~~~qk~iyyi~~~s~~~~~~sp~~E~~k~~~~evly 470 (656)
T KOG0019|consen 391 GLFLKEGIVTASEQQVKEIAKLLRYESSKSGEGATSLDDYVERMREGQKNIYYITAPNRQLAESSPYYEAFKKKNYEVLF 470 (656)
T ss_pred hhhhhhcccchhhhhhhHHHHHhhhhccccccccccHHHHHHhhcccccceEEeccchhhhhhcchHHHHHHhcCceeEe
Confidence 0015789999999999999999999999999999999999999999999
Q ss_pred ecCchhHHHHHhhhhcCCCceeeccccCCCCCCchHHHhhhhhhHHHHHHHHHHHHHhhcccceEEEEeeccCCCceEEE
Q psy4716 126 MTEPIDEYVVQQLKDYDGKTLVSVTKEGLELPEDEEEKKKREEDKVKFENLCKVMKDILDKKVEKVIVSNRLVDSPCCIV 205 (334)
Q Consensus 126 l~dpiDe~~i~~l~~y~gkkf~sV~~~~~~l~~~e~~k~~~~~~~~e~~~L~~~~K~~L~~~V~~V~vS~rL~~sPa~lv 205 (334)
|++||||+++++|.+|+|++|++|++++++++++++++.+.+..+.+|+.||+|+|+.|+++|++|++|.||++|||||+
T Consensus 471 ~~ep~DE~~~~~Lk~~~~k~lVsvtkEglel~e~ee~~~k~ee~k~efe~lck~mK~iL~~kVekV~vs~RlvssPc~I~ 550 (656)
T KOG0019|consen 471 MYEPADEVVLLGLKEFKGKKLVSVTKEGVELPEDDEEKAKDEESKKEFEELCKWMKEILGSKVEKVTVNNRLVSHPAMIT 550 (656)
T ss_pred eeccHHHHHHHhhhhhcccceeccchhhccCCccchhHHHHHHHHHHHHHHHHHHHHHhcCceEEEEecCcccCCceEEE
Confidence 99999999999999999999999999999999666656666777889999999999999999999999999999999999
Q ss_pred ecCCcchHHHHHHHHHhhccCCcccccccCcceEEEcCCChHHHHHHHhhhcccchHHHHHHHHHhhhhhhhhCCCCCCC
Q psy4716 206 TSQYGWTANMERIMKAQALRDTSTMGYMAAKKHLEINPDHSIVETLRQKADADKNDKAVKDLVNLLFETSLLSSGFTLEE 285 (334)
Q Consensus 206 ~~e~g~s~~M~r~mk~q~~~~~~~~~~~~~k~~LEINp~HplIkkL~~~~~~~~~~~~~~~~a~~Lyd~AlL~~G~~i~d 285 (334)
+++||||++|+|+|++|+..+++.+++|.++++|||||+||||+.|+++...++++ .+++++.|||++|||++||.++|
T Consensus 551 t~~~gwsAnmeriMkAqal~d~s~~~ym~~kk~lEINP~hpivk~L~~~~~~dk~d-~~k~lv~llfetALlssGfsl~d 629 (656)
T KOG0019|consen 551 TLEYGWAARMERIMKAQALTDNETMGYMKAKKHLEINPDHPLVKTLRQLRESDKND-TAKDLVEQLYETALISAGFSLDD 629 (656)
T ss_pred ecccccchhHHHHHhhhhccccChhhhccccceeeeCCCChHHHHHHHHHhcCcch-hHHHHHHHHHHHHHHHcCCCcCC
Confidence 99999999999999999999998899999999999999999999999999888887 89999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCCCCcc
Q psy4716 286 PQVHAARIHRMIKLGLGIEDED 307 (334)
Q Consensus 286 ~~~f~~ri~~ll~~~l~~~~~~ 307 (334)
|+.|+.|+|+||..+|+++.+.
T Consensus 630 P~~~~~ri~~ml~~~l~~~e~~ 651 (656)
T KOG0019|consen 630 PQTMVGRINRLLKSGLGRDEDE 651 (656)
T ss_pred hHHHhhHHHHHHHHHhccCCCc
Confidence 9999999999999999997663
No 2
>PTZ00272 heat shock protein 83 kDa (Hsp83); Provisional
Probab=100.00 E-value=7.8e-75 Score=604.32 Aligned_cols=231 Identities=58% Similarity=0.958 Sum_probs=205.4
Q ss_pred CChhHHHHhccccCceEEEEeCCCHHHHhcChhHHHHHhCCcEEEeecCchhHHHHHhhhhcCCCceeeccccCCCCCCc
Q psy4716 80 LEDEDYVARMKENQKQIYYITGETKDQVANSSFVERVKKRGFEVIYMTEPIDEYVVQQLKDYDGKTLVSVTKEGLELPED 159 (334)
Q Consensus 80 ~tl~eYv~rmke~Qk~IYY~tg~s~~~~~~SP~lE~~k~kg~EVL~l~dpiDe~~i~~l~~y~gkkf~sV~~~~~~l~~~ 159 (334)
+||++|++|||++|+.|||++|+|++++++|||+|.|++||||||||+||||+||+++|++|+|++|+||+++++++++.
T Consensus 447 ~sL~eYv~rmk~~Q~~IYY~~~~s~~~~~~sP~lE~~~~kg~EVL~l~dpiDe~~i~~l~ey~~k~f~sV~~~~~~l~~~ 526 (701)
T PTZ00272 447 TTLKDYVTRMKAGQKSIYYITGDSKKKLETSPFIEQARRRGLEVLFMTEPIDEYVMQQVKDFEDKKFACLTKEGVHFEES 526 (701)
T ss_pred eeHHHHHHhhccCCceEEEEeCCCHHHHHhChHHHHHHhCCCeEEEeCCcHHHHHHHHHHhcCCCceEeccccccccccc
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999987643
Q ss_pred hHHHhhhhhhHHHHHHHHHHHHHhhcccceEEEEeeccCCCceEEEecCCcchHHHHHHHHHhhccCCcccccccCcceE
Q psy4716 160 EEEKKKREEDKVKFENLCKVMKDILDKKVEKVIVSNRLVDSPCCIVTSQYGWTANMERIMKAQALRDTSTMGYMAAKKHL 239 (334)
Q Consensus 160 e~~k~~~~~~~~e~~~L~~~~K~~L~~~V~~V~vS~rL~~sPa~lv~~e~g~s~~M~r~mk~q~~~~~~~~~~~~~k~~L 239 (334)
+++++..+..++++++|++|||++|+++|.+|++|+||++||||||++++|+|++|+|||++|+++...+..++..+|||
T Consensus 527 ~~e~~~~~~~~~~~~~L~~~~k~~L~~kV~~VkvS~RL~~sPa~lv~~e~g~s~~Merimkaq~~~~~~~~~~~~~kkiL 606 (701)
T PTZ00272 527 EEEKQQREEEKAACEKLCKTMKEVLGDKVEKVIVSERLSTSPCILVTSEFGWSAHMEQIMRNQALRDSSMAQYMMSKKTM 606 (701)
T ss_pred ccchhhhhhhHHHHHHHHHHHHHHhCCcccEEEEeccCCCCCeEEEecccchhHHHHHHHHhcccccccccccccCCeEE
Confidence 32222223345679999999999999999999999999999999999999999999999999875332222355678999
Q ss_pred EEcCCChHHHHHHHhhhcccchHHHHHHHHHhhhhhhhhCCCCCCCHHHHHHHHHHHHHhccCCCCccccc
Q psy4716 240 EINPDHSIVETLRQKADADKNDKAVKDLVNLLFETSLLSSGFTLEEPQVHAARIHRMIKLGLGIEDEDEVA 310 (334)
Q Consensus 240 EINp~HplIkkL~~~~~~~~~~~~~~~~a~~Lyd~AlL~~G~~i~d~~~f~~ri~~ll~~~l~~~~~~~~~ 310 (334)
||||+||||++|++++..+.+++.++++|+||||+|+|++|+.++||+.|++|+++||..+|+++.++.++
T Consensus 607 EINP~HpiIk~L~~~~~~~~~~~~~~~la~~LyD~AlL~~G~~leDp~~f~~Ri~~lL~~~l~~~~~~~~~ 677 (701)
T PTZ00272 607 ELNPRHPIIKELRRRVGADENDKAVKDLVFLLFDTSLLTSGFQLEDPTGYAERINRMIKLGLSLDEEEEEA 677 (701)
T ss_pred EECCCCHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHHHHHhcCCCcccccc
Confidence 99999999999988665566667799999999999999999999999999999999998899998886553
No 3
>KOG0020|consensus
Probab=100.00 E-value=7.8e-75 Score=567.91 Aligned_cols=233 Identities=45% Similarity=0.786 Sum_probs=220.0
Q ss_pred CChhHHHHhccccCceEEEEeCCCHHHHhcChhHHHHHhCCcEEEeecCchhHHHHHhhhhcCCCceeeccccCCCCCCc
Q psy4716 80 LEDEDYVARMKENQKQIYYITGETKDQVANSSFVERVKKRGFEVIYMTEPIDEYVVQQLKDYDGKTLVSVTKEGLELPED 159 (334)
Q Consensus 80 ~tl~eYv~rmke~Qk~IYY~tg~s~~~~~~SP~lE~~k~kg~EVL~l~dpiDe~~i~~l~~y~gkkf~sV~~~~~~l~~~ 159 (334)
+||++|++|||+.|+.|||++|.||++++.|||+|.+.++|||||||++|+||||||.|.+|+|++||+|.++++.+++.
T Consensus 519 TsLdqYveRMK~kQ~~IyymaGssr~e~E~sPfvERLlkKGyEVi~ltepVDEyciqalpe~d~KkFQNVaKEG~k~~~~ 598 (785)
T KOG0020|consen 519 TSLDQYVERMKEKQDKIYYMAGSSRKEVEKSPFVERLLKKGYEVIYLTEPVDEYCIQALPEFDGKKFQNVAKEGVKFDKS 598 (785)
T ss_pred ccHHHHHHHHhhccccEEEecCCcHhhhccCcHHHHHHhcCceEEEEcchhHHHHHHhhhhhcchhHhHHHhhhcccCcc
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred hHHHhhhhhhHHHHHHHHHHHHH-hhcccceEEEEeeccCCCceEEEecCCcchHHHHHHHHHhhcc---CCcccccccC
Q psy4716 160 EEEKKKREEDKVKFENLCKVMKD-ILDKKVEKVIVSNRLVDSPCCIVTSQYGWTANMERIMKAQALR---DTSTMGYMAA 235 (334)
Q Consensus 160 e~~k~~~~~~~~e~~~L~~~~K~-~L~~~V~~V~vS~rL~~sPa~lv~~e~g~s~~M~r~mk~q~~~---~~~~~~~~~~ 235 (334)
+..|+..+..+++|+||++|||. +|+++|.++.||+||++|||++|++.||||.+|+|||++|+++ +.+..-++.+
T Consensus 599 eK~Ke~~e~l~~~FepL~~W~k~~alkd~ieka~vSqrL~~spcalVas~~GwsgNmERimksqa~~~~kD~~~~~Y~~q 678 (785)
T KOG0020|consen 599 EKTKESHEALEEEFEPLTKWLKDKALKDKIEKAVVSQRLTESPCALVASQYGWSGNMERIMKSQAYQKSKDPSKNYYASQ 678 (785)
T ss_pred cchhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhccCchhhhhhhccccccHHHHHHHhhhhccCCchhhHHhcc
Confidence 77788888899999999999998 6899999999999999999999999999999999999999987 3332337889
Q ss_pred cceEEEcCCChHHHHHHHhhhcccchHHHHHHHHHhhhhhhhhCCCCCCCHHHHHHHHHHHHHhccCCCCccccccC
Q psy4716 236 KKHLEINPDHSIVETLRQKADADKNDKAVKDLVNLLFETSLLSSGFTLEEPQVHAARIHRMIKLGLGIEDEDEVATG 312 (334)
Q Consensus 236 k~~LEINp~HplIkkL~~~~~~~~~~~~~~~~a~~Lyd~AlL~~G~~i~d~~~f~~ri~~ll~~~l~~~~~~~~~~~ 312 (334)
+++|||||+||||+.|++++.+++.++.+++.|.++|.+|+|.+||.+.|+..|+.||.+||+++|++++|+.++++
T Consensus 679 Kkt~EINPRHPlirell~Ri~adeeD~t~~d~A~lmf~TAtlrSGf~L~d~~~fadrIe~~lr~sL~is~Da~ve~e 755 (785)
T KOG0020|consen 679 KKTFEINPRHPLIRELLRRIAADEEDETVKDTAVLMFETATLRSGFILQDTKDFADRIENMLRQSLNISPDAQVEEE 755 (785)
T ss_pred CceeeeCCCChHHHHHHHHhhcCcccchHHHHHHHHHHHHHhhcCccccchHHHHHHHHHHHHhhcCCCcccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999866654
No 4
>PTZ00130 heat shock protein 90; Provisional
Probab=100.00 E-value=8e-72 Score=583.49 Aligned_cols=232 Identities=31% Similarity=0.579 Sum_probs=206.0
Q ss_pred CChhHHHHhccccCceEEEEeCCCHHHHhcChhHHHHHhCCcEEEeecCchhHHHHHhhhhcCCCceeeccccCCCCCCc
Q psy4716 80 LEDEDYVARMKENQKQIYYITGETKDQVANSSFVERVKKRGFEVIYMTEPIDEYVVQQLKDYDGKTLVSVTKEGLELPED 159 (334)
Q Consensus 80 ~tl~eYv~rmke~Qk~IYY~tg~s~~~~~~SP~lE~~k~kg~EVL~l~dpiDe~~i~~l~~y~gkkf~sV~~~~~~l~~~ 159 (334)
+||++|++||+++|+.|||++|++++++++|||+|.|+++|||||||++|||+||+++|.+|+|++|++|+++++++...
T Consensus 536 ~SL~eYv~rMke~Qk~IYY~t~~s~~~~~~SP~lE~~~~kg~EVL~l~d~iDE~~l~~L~e~~gk~~~sV~~~~~~~~~~ 615 (814)
T PTZ00130 536 ISLDTYIENMKPDQKFIYYASGDSYEYLSKIPQLQIFKKKNIDVVFLTESVDESCVQRVQEYDGKKFKSIQKGEITFELT 615 (814)
T ss_pred cCHHHHHhhhccCCeEEEEEeCCCHHHHhcChHHHHHHhCCCeEEEeCCchHHHHHHHHHHhcCceEEEecccccccccc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999887643
Q ss_pred hHHHhhhhhhHHHHHHHHHHHHHhhcccceEEEEeeccCCCceEEEecCCcchHHHHHHHHHhhccCCcccccccCcceE
Q psy4716 160 EEEKKKREEDKVKFENLCKVMKDILDKKVEKVIVSNRLVDSPCCIVTSQYGWTANMERIMKAQALRDTSTMGYMAAKKHL 239 (334)
Q Consensus 160 e~~k~~~~~~~~e~~~L~~~~K~~L~~~V~~V~vS~rL~~sPa~lv~~e~g~s~~M~r~mk~q~~~~~~~~~~~~~k~~L 239 (334)
+++++..+..++++++|++|||++|+++|.+|++|+||++||||||++++|+|++|+|||++|+. +++++.++..+|||
T Consensus 616 ~~e~~~~~~~~~~~~~L~~~~k~~L~~~V~~V~vS~RL~~sPa~lv~~e~g~s~~Merimka~~~-~~~~~~~~~~k~iL 694 (814)
T PTZ00130 616 EDEKKKEEKVKKMYKALIDVISDTLRNQIFKVEISRRLVDAPCAVVSTEWGLSGQMEKLMKINVN-NSDQIKAMSGQKIL 694 (814)
T ss_pred ccchhhhhHHHHHHHHHHHHHHHHhcCcccEEEEeccCCCCCcEEEecCccccHHHHHHHHHhhc-cccccccccCCeEE
Confidence 33323333445679999999999999999999999999999999999999999999999999863 32223456679999
Q ss_pred EEcCCChHHHHHHHhhhcccchHHHHHHHHHhhhhhhhhCCCCCCCHHHHHHHHHHHHHhccCCCCccccccC
Q psy4716 240 EINPDHSIVETLRQKADADKNDKAVKDLVNLLFETSLLSSGFTLEEPQVHAARIHRMIKLGLGIEDEDEVATG 312 (334)
Q Consensus 240 EINp~HplIkkL~~~~~~~~~~~~~~~~a~~Lyd~AlL~~G~~i~d~~~f~~ri~~ll~~~l~~~~~~~~~~~ 312 (334)
||||+||||++|+.++..+++++.++++|+||||+|+|++|+.++||+.|++|+++||.++|++++++.++..
T Consensus 695 EINp~Hpii~~L~~~~~~~~~~~~~~~~a~~Lyd~AlL~~G~~l~DP~~fa~ri~~ll~~~l~~~~~~~~~~~ 767 (814)
T PTZ00130 695 EINPDHPIMIDLLKRSVSNPKDSQLTESIKIIYQSAKLASGFDLEDTADLAQIVYDHINQKLGVDNNLKIDDL 767 (814)
T ss_pred EECCCCHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCcccccccc
Confidence 9999999999998655445566679999999999999999999999999999999999999999988666553
No 5
>COG0326 HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-67 Score=537.21 Aligned_cols=212 Identities=41% Similarity=0.660 Sum_probs=193.5
Q ss_pred CChhHHHHhccccCceEEEEeCCCHHHHhcChhHHHHHhCCcEEEeecCchhHHHHHhhhhcCCCceeeccccCCCCCCc
Q psy4716 80 LEDEDYVARMKENQKQIYYITGETKDQVANSSFVERVKKRGFEVIYMTEPIDEYVVQQLKDYDGKTLVSVTKEGLELPED 159 (334)
Q Consensus 80 ~tl~eYv~rmke~Qk~IYY~tg~s~~~~~~SP~lE~~k~kg~EVL~l~dpiDe~~i~~l~~y~gkkf~sV~~~~~~l~~~ 159 (334)
++|+|||+|||++|+.|||++|+|...+++||++|.|++||||||||+++||+|++..+.+|+|++|++|+++++++...
T Consensus 410 ~sl~eYv~rmke~q~~IyY~tges~~~~~~sP~lE~~k~kgieVL~l~d~iDe~~l~~~~e~egk~~~~i~~~~~~~~~~ 489 (623)
T COG0326 410 VSLEEYVSRMKEGQKQIYYITGESYQAAKGSPHLELFKAKGIEVLLLTDRIDEFMLTMLPEFEGKPFKSITKGDLDLELL 489 (623)
T ss_pred ccHHHHHHhcccccceeEEeccccHHHHhcCchHHHHHhcCcEEEecCccchHHHhhhhhhccCCcceeecccccccccc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999888654
Q ss_pred hHH-HhhhhhhHHHHHHHHHHHHHhhcccceEEEEeeccCCCceEEEecCCcchHHHHHHHHHhhccCCcccccccCcce
Q psy4716 160 EEE-KKKREEDKVKFENLCKVMKDILDKKVEKVIVSNRLVDSPCCIVTSQYGWTANMERIMKAQALRDTSTMGYMAAKKH 238 (334)
Q Consensus 160 e~~-k~~~~~~~~e~~~L~~~~K~~L~~~V~~V~vS~rL~~sPa~lv~~e~g~s~~M~r~mk~q~~~~~~~~~~~~~k~~ 238 (334)
.++ +...+..+.++++|++++|+.|+++|.+|++|+||+++|||++.+..+++.+|+|+|+++++.. +..++|
T Consensus 490 ~~e~~~~~~~~~~~~~~~~~~~k~~L~~~vk~Vr~s~rl~dspa~l~~~~~~~~~~m~r~l~~~~~~~------~~~k~i 563 (623)
T COG0326 490 EEEDEADSEEEKKEFKPLLERVKEILGDKVKDVRLSHRLTDSPACLTTDGADLSTQMERLLKAQGQEV------PESKKI 563 (623)
T ss_pred chhhhhhhHHHHHHHHHHHHHHHHHhcCccceeEeecccCCCcceeecCccchhHHHHHHHHhccccC------Cccccc
Confidence 333 2334455677999999999999999999999999999999999999999999999999987432 256999
Q ss_pred EEEcCCChHHHHHHHhhhcccchHHHHHHHHHhhhhhhhhCCCCCCCHHHHHHHHHHHHHhcc
Q psy4716 239 LEINPDHSIVETLRQKADADKNDKAVKDLVNLLFETSLLSSGFTLEEPQVHAARIHRMIKLGL 301 (334)
Q Consensus 239 LEINp~HplIkkL~~~~~~~~~~~~~~~~a~~Lyd~AlL~~G~~i~d~~~f~~ri~~ll~~~l 301 (334)
|||||+||||++|.... +...+++++++|||+|||++|++++||..|++|+|++|.+++
T Consensus 564 lEiNp~h~lv~~L~~~~----d~~~~~~~~~llydqAll~eg~~~~dp~~F~~rln~ll~~~~ 622 (623)
T COG0326 564 LEINPNHPLVKKLASLE----DEASVADLVELLYDQALLAEGGPLEDPAAFIERLNDLLSRLL 622 (623)
T ss_pred eeeCcccHHHHHHHhcc----cHHHHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHHHHHhc
Confidence 99999999999999853 456799999999999999999999999999999999998765
No 6
>PF00183 HSP90: Hsp90 protein; InterPro: IPR001404 Molecular chaperones, or heat shock proteins (Hsps) are ubiquitous proteins that act to maintain proper protein folding within the cell []. They assist in the folding of nascent polypeptide chains, and are also involved in the re-folding of denatured proteins following proteotoxic stress. As their name implies, the heat shock proteins were first identified as proteins that were up-regulated under conditions of elevated temperature. However, subsequent studies have shown that increased Hsp expression is induced by a variety of cellular stresses, including oxidative stress and inflammation. Five major Hsp families have been determined, and are categorized according to their molecular size (Hsp100, Hsp90, Hsp70, Hsp60, and the small Hsps). Hsps are involved in a variety of cellular processes that are ATP-dependent. These include: prevention of protein aggregation, protein degradation, protein trafficking, and maintenance of signalling proteins in a conformation that permits activation. Hsp90 chaperones are unique in their ability to regulate a specific subset of cellular signalling proteins that have been implicated in disease processes, including intracellular protein kinases, steroid hormone receptors, and growth factor receptors [].; GO: 0005524 ATP binding, 0051082 unfolded protein binding, 0006457 protein folding, 0006950 response to stress; PDB: 3K99_D 2H55_A 3RLP_A 1OSF_A 3R4M_A 1YES_A 1UY9_A 3FT8_A 2YE2_A 2QF6_A ....
Probab=100.00 E-value=2.6e-64 Score=514.18 Aligned_cols=234 Identities=50% Similarity=0.860 Sum_probs=205.1
Q ss_pred CCCChhHHHHhccccCceEEEEeCCCHHHHhcChhHHHHHhCCcEEEeecCchhHHHHHhhhhcCCCceeeccccCCCCC
Q psy4716 78 PKLEDEDYVARMKENQKQIYYITGETKDQVANSSFVERVKKRGFEVIYMTEPIDEYVVQQLKDYDGKTLVSVTKEGLELP 157 (334)
Q Consensus 78 p~~tl~eYv~rmke~Qk~IYY~tg~s~~~~~~SP~lE~~k~kg~EVL~l~dpiDe~~i~~l~~y~gkkf~sV~~~~~~l~ 157 (334)
..+||++|++||+++|+.|||++|+|++.+.+|||+|.|++||||||||++|||+|||++|++|+|++|+||++++++++
T Consensus 272 ~~~SL~eYv~rmke~Qk~IYY~~g~s~~~~~~SP~lE~~k~kG~EVL~l~dpIDe~~i~~L~e~~gkkf~~I~ke~l~l~ 351 (531)
T PF00183_consen 272 KLTSLDEYVERMKEGQKQIYYLTGESREEAEQSPYLEAFKKKGYEVLFLTDPIDEFVIQQLEEYEGKKFQSIDKEDLDLE 351 (531)
T ss_dssp SEEEHHHHHHTS-TT-SEEEEEESSSHHHHHTSGGGHHHHHCT--EEEE-SHHHHHHHHHHSEETTEEEEETTBSSSSSS
T ss_pred ccccHHHhhhccccccccceEEecchHHHHhhccchhhHHhhCceEEEeCCchHHHHHHHHhhccccccccccccccccc
Confidence 35999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CchHHHhhhhhhHHHHHHHHHHHHHhhcccceEEEEeeccCCCceEEEecCCcchHHHHHHHHHhhccCCcccccccCcc
Q psy4716 158 EDEEEKKKREEDKVKFENLCKVMKDILDKKVEKVIVSNRLVDSPCCIVTSQYGWTANMERIMKAQALRDTSTMGYMAAKK 237 (334)
Q Consensus 158 ~~e~~k~~~~~~~~e~~~L~~~~K~~L~~~V~~V~vS~rL~~sPa~lv~~e~g~s~~M~r~mk~q~~~~~~~~~~~~~k~ 237 (334)
+.++++...+..++++++|++|||++|+++|.+|++|.||++|||||+++++|+|++|||||+||++++++...+|..++
T Consensus 352 ~~e~ek~~~e~~~~~~~~L~~~~k~~L~~kV~~V~vS~RL~~sPa~lv~~e~g~s~~Merimkaqa~~~~~~~~~~~~kk 431 (531)
T PF00183_consen 352 EDEEEKKEDEELKEEFKPLTEWLKELLGDKVEKVKVSNRLVDSPAVLVSSEYGWSANMERIMKAQAMADMSMQEYMPSKK 431 (531)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSEEEE-SSSSSSSEEEEE-SSSB-HHHHHHHHHHHCCSTTTSSTSC--E
T ss_pred cchhhhhhhhhhhhHHHHHHHHHHhhhhhhhheecccccccCCcceeecccchhHHHHHHHhhhhccccccccccccccc
Confidence 76666666677788999999999999999999999999999999999999999999999999999987665556777899
Q ss_pred eEEEcCCChHHHHHHHhhhcccchHHHHHHHHHhhhhhhhhCCCCCCCHHHHHHHHHHHHHhccCCCCcccccc
Q psy4716 238 HLEINPDHSIVETLRQKADADKNDKAVKDLVNLLFETSLLSSGFTLEEPQVHAARIHRMIKLGLGIEDEDEVAT 311 (334)
Q Consensus 238 ~LEINp~HplIkkL~~~~~~~~~~~~~~~~a~~Lyd~AlL~~G~~i~d~~~f~~ri~~ll~~~l~~~~~~~~~~ 311 (334)
||||||+||||++|++++..+.+++.++++|+||||+|+|++||.++||+.|++|+++||.++||++.+..+.+
T Consensus 432 iLEINp~HPLIk~L~~~~~~d~~d~~~~~la~~LyD~AlL~~G~~l~dp~~F~~Ri~~lL~~~l~~~~~~~~~~ 505 (531)
T PF00183_consen 432 ILEINPNHPLIKKLLKLVEKDEDDELAKDLAEQLYDTALLASGFELEDPAAFAKRINKLLEKSLGVDPDAEVEE 505 (531)
T ss_dssp EEEE-TTSHHHHHHHHHHHCCTTHHHHHHHHHHHHHHHHHHTTSS-SSHHHHHHHHHHHHHHTTC--STTTTTT
T ss_pred eeecCCCCHHHHHHHhhhcccchhhHHHHHHHHHhhhhhhhcCCCcccHHHHHHHHHHHHHHhcCCCcCCcccc
Confidence 99999999999999998887888889999999999999999999999999999999999999999988765544
No 7
>PRK05218 heat shock protein 90; Provisional
Probab=100.00 E-value=3.3e-59 Score=484.60 Aligned_cols=213 Identities=39% Similarity=0.689 Sum_probs=189.9
Q ss_pred CChhHHHHhccccCceEEEEeCCCHHHHhcChhHHHHHhCCcEEEeecCchhHHHHHhhhhcCCCceeeccccCCCCCC-
Q psy4716 80 LEDEDYVARMKENQKQIYYITGETKDQVANSSFVERVKKRGFEVIYMTEPIDEYVVQQLKDYDGKTLVSVTKEGLELPE- 158 (334)
Q Consensus 80 ~tl~eYv~rmke~Qk~IYY~tg~s~~~~~~SP~lE~~k~kg~EVL~l~dpiDe~~i~~l~~y~gkkf~sV~~~~~~l~~- 158 (334)
+||+||++||+++|+.|||++++|++++++|||+|.|+++|+|||++++|+|++|+++|.+|+|++|++|++.++++++
T Consensus 400 ~sL~ey~~rm~~~q~~Iyy~~~~~~~~~~~sp~~e~~~~~g~eVl~~~~~~De~~l~~l~~~~~~~~~~i~~~~~~~~~~ 479 (613)
T PRK05218 400 VSLAEYVERMKEGQKKIYYITGDSREAAKNSPHLELFKKKGIEVLLLTDPIDEFWISYLEEFDGKPFKSVARGDLDLGKE 479 (613)
T ss_pred ccHHHHHHhCcCCCceEEEEeCCCHHHHHhChHHHHHHhcCceEEEeCCccHHHHHHHHHHhcCCceEEeeccccccccc
Confidence 5899999999999999999999999999999999999999999999999999999999999999999999999998765
Q ss_pred chHHHhhhhhhHHHHHHHHHHHHHhhcccceEEEEeeccCCCceEEEecCCcchHHHHHHHHHhhccCCcccccccCcce
Q psy4716 159 DEEEKKKREEDKVKFENLCKVMKDILDKKVEKVIVSNRLVDSPCCIVTSQYGWTANMERIMKAQALRDTSTMGYMAAKKH 238 (334)
Q Consensus 159 ~e~~k~~~~~~~~e~~~L~~~~K~~L~~~V~~V~vS~rL~~sPa~lv~~e~g~s~~M~r~mk~q~~~~~~~~~~~~~k~~ 238 (334)
.++++...+..++++++|++|+++.|+++|.+|++|.||+++||||+++++|++.+|+|+|++|+. +++..+++
T Consensus 480 ~~~~~~~~~~~~~~~~~l~~~~~~~L~~~v~~V~~s~rl~~~Pa~~v~~~~~~~~~mer~~~~~~~------~~~~~~~~ 553 (613)
T PRK05218 480 DEEEKEEKEEAEEEFKPLLERLKEALGDKVKDVRLSHRLTDSPACLVADEGDMSTQMEKLLKAAGQ------EVPESKPI 553 (613)
T ss_pred cchhhhhhhhhHHHHHHHHHHHHHHhcCcceEEEEeccCCCCCeEEEeCccchHHHHHHHHHhhhh------cccccceE
Confidence 111222223345679999999999999999999999999999999999999999999999998751 23346899
Q ss_pred EEEcCCChHHHHHHHhhhcccchHHHHHHHHHhhhhhhhhCCCCCCCHHHHHHHHHHHHHhccC
Q psy4716 239 LEINPDHSIVETLRQKADADKNDKAVKDLVNLLFETSLLSSGFTLEEPQVHAARIHRMIKLGLG 302 (334)
Q Consensus 239 LEINp~HplIkkL~~~~~~~~~~~~~~~~a~~Lyd~AlL~~G~~i~d~~~f~~ri~~ll~~~l~ 302 (334)
|||||+||||++|++.. +++.++.++++|||+|+|++|+.++||+.|++|+++||.++++
T Consensus 554 LeiNp~hplI~~L~~~~----d~~~~~~~~~~Lyd~AlL~~G~~~~d~~~~~~r~~~ll~~~~~ 613 (613)
T PRK05218 554 LEINPNHPLVKKLADEA----DEAKFKDLAELLYDQALLAEGGSLEDPAAFVKRLNELLLKLLA 613 (613)
T ss_pred EEEcCCCHHHHHHHhcc----ChHHHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHHHHHhhC
Confidence 99999999999998742 2334999999999999999999999999999999999988764
No 8
>PRK14083 HSP90 family protein; Provisional
Probab=100.00 E-value=1.2e-49 Score=410.90 Aligned_cols=203 Identities=18% Similarity=0.196 Sum_probs=165.4
Q ss_pred CChhHHHHhccccCceEEEEeCC-CHHHHhcChhHHHHHhCCcEEEeecCchhHHHHHhhhh-cCCCceeeccccCCC--
Q psy4716 80 LEDEDYVARMKENQKQIYYITGE-TKDQVANSSFVERVKKRGFEVIYMTEPIDEYVVQQLKD-YDGKTLVSVTKEGLE-- 155 (334)
Q Consensus 80 ~tl~eYv~rmke~Qk~IYY~tg~-s~~~~~~SP~lE~~k~kg~EVL~l~dpiDe~~i~~l~~-y~gkkf~sV~~~~~~-- 155 (334)
+||+||++||+ .|||++++ ++.++. +.|++||+|||+|++|||+|++++|.+ |+|++|++|+++++.
T Consensus 378 ~sL~eY~~r~~----~IyY~~~~~~~~~~~-----~~~~~kg~eVl~~~~~iDe~~l~~l~~~~~~~~~~~v~~~~~~~~ 448 (601)
T PRK14083 378 MTLAEIRRRHG----VIRYTSSVDEFRQLA-----PIARAQGMGVINGGYTYDSELLERLPRLRPGLTVERLDPAELTDR 448 (601)
T ss_pred cCHHHHHHhCC----eEEEEcCHHHHHHHH-----HHHHHCCCeEEEeCCccHHHHHHHHHhhCCCCcEEEechhhhhhh
Confidence 78999999984 79999996 666664 799999999999999999999999998 999999999998764
Q ss_pred CCCchHHHhhhhhhHHHHHHHHHHHHHhhcccceEE-EEeeccCCCceEEEecCCcchHHHHHHHHHhhccCCc----cc
Q psy4716 156 LPEDEEEKKKREEDKVKFENLCKVMKDILDKKVEKV-IVSNRLVDSPCCIVTSQYGWTANMERIMKAQALRDTS----TM 230 (334)
Q Consensus 156 l~~~e~~k~~~~~~~~e~~~L~~~~K~~L~~~V~~V-~vS~rL~~sPa~lv~~e~g~s~~M~r~mk~q~~~~~~----~~ 230 (334)
+...+ ...++++++|++|++++|++++.+| ++|.||+++||||+.++ +.+|+|+|++...+.++ ++
T Consensus 449 ~~~~~------~~~~~~~~~l~~~~~~~L~~~~~~v~~~s~rl~~~Pa~~v~~e---~~~~~~~m~~~~~~~~~~~~~~l 519 (601)
T PRK14083 449 LEPLT------PEEELALRPFLAEAREVLAPFGCDVVIRHFEPADLPALYLHDR---AAQHSREREEAVEEADDLWADIL 519 (601)
T ss_pred ccccc------hhhHHHHHHHHHHHHHHhCccceEEEEEcCCCCCCCEEEEeCc---hhHHHHHHHhhhhhcccchhhhh
Confidence 32211 1235679999999999999986655 77889999999999987 44677777543211110 01
Q ss_pred -----ccccCcceEEEcCCChHHHHHHHhhhcccchHHHHHHHHHhhhhhhhhCCCCCC--CHHHHHHHHHHHHHhccCC
Q psy4716 231 -----GYMAAKKHLEINPDHSIVETLRQKADADKNDKAVKDLVNLLFETSLLSSGFTLE--EPQVHAARIHRMIKLGLGI 303 (334)
Q Consensus 231 -----~~~~~k~~LEINp~HplIkkL~~~~~~~~~~~~~~~~a~~Lyd~AlL~~G~~i~--d~~~f~~ri~~ll~~~l~~ 303 (334)
.++..+++|||||+||||++|.++ .+++.+.+++++|||+|+|++|++++ +|+.|++++++||..+|+-
T Consensus 520 ~~~~~~~~~~~~~LeiN~~hpli~~l~~~----~d~~~~~~~~~~Lyd~AlL~~g~~l~~~e~~~~~~~~~~l~~~~l~~ 595 (601)
T PRK14083 520 GSLDESQPAPRARLVLNLRNPLVRRLATL----GDPKLLSRAVEALYVQALLLGHRPLRPAEMALLNRSLLGLLELALDA 595 (601)
T ss_pred hhhhhcccccCeEEEECCCCHHHHHHHhc----cChHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 233568999999999999999874 34567999999999999999997777 9999999999999988876
Q ss_pred C
Q psy4716 304 E 304 (334)
Q Consensus 304 ~ 304 (334)
+
T Consensus 596 ~ 596 (601)
T PRK14083 596 D 596 (601)
T ss_pred C
Confidence 4
No 9
>TIGR00585 mutl DNA mismatch repair protein MutL. All proteins in this family for which the functions are known are involved in the process of generalized mismatch repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=93.95 E-value=0.051 Score=52.60 Aligned_cols=49 Identities=20% Similarity=0.248 Sum_probs=37.3
Q ss_pred CccceeeeeecCeeEEEeec--CCCCceeeeeCCCCceEEeeC--CCCCCccEEEEe
Q psy4716 1 MNGFYSAYLVADKVTVTSKH--NDDEQYIWESSAGGSFTIKPD--NSQPLGRLLVEK 53 (334)
Q Consensus 1 gvGfyS~f~Va~~v~v~tr~--~~~~~~~w~s~~~g~~~i~~~--~~~~~Gt~i~l~ 53 (334)
|.|++|.+.+| +|+|+||. .+..+|.|.++|. .+... ...++||+|+++
T Consensus 96 G~al~si~~~s-~~~i~S~~~~~~~~~~~~~~~g~---~~~~~~~~~~~~GTtV~v~ 148 (312)
T TIGR00585 96 GEALASISSVS-RLTITTKTSAADGLAWQALLEGG---MIEEIKPAPRPVGTTVEVR 148 (312)
T ss_pred chHHHHHHhhC-cEEEEEeecCCCcceEEEEECCC---cCcccccccCCCccEEEEc
Confidence 78999999999 89999997 4677899985543 23222 224799999997
No 10
>PF13589 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PDB: 3IED_A 2XCM_B 2JKI_B 3OPD_A 2O1V_B 2GQP_A 2O1W_C 1YT2_A 1TC6_A 2H8M_B ....
Probab=91.95 E-value=0.11 Score=44.05 Aligned_cols=30 Identities=27% Similarity=0.340 Sum_probs=24.2
Q ss_pred Ccc-ceeeeeecCeeEEEeecC-CCCceeeee
Q psy4716 1 MNG-FYSAYLVADKVTVTSKHN-DDEQYIWES 30 (334)
Q Consensus 1 gvG-fyS~f~Va~~v~v~tr~~-~~~~~~w~s 30 (334)
|+| ++|+|+.+++|+|+|++. ....+.|..
T Consensus 74 G~G~k~A~~~~~~~~~v~S~~~~~~~~~~~~~ 105 (137)
T PF13589_consen 74 GIGLKLAIFSLGDRVEVISKTNGESFTYTIDY 105 (137)
T ss_dssp TSGCGGGGGGTEEEEEEEEESTTSSSEEEEEE
T ss_pred ceEHHHHHHHhcCEEEEEEEECCCCcEEEEEE
Confidence 899 899999999999999996 444555444
No 11
>PF06112 Herpes_capsid: Gammaherpesvirus capsid protein; InterPro: IPR009299 This family consists of several Gammaherpesvirus capsid proteins. The exact function of this family is unknown.; GO: 0019028 viral capsid
Probab=74.08 E-value=3.5 Score=35.96 Aligned_cols=25 Identities=20% Similarity=0.345 Sum_probs=19.3
Q ss_pred ceEEEcCCChHHHHHHHhhhcccch
Q psy4716 237 KHLEINPDHSIVETLRQKADADKND 261 (334)
Q Consensus 237 ~~LEINp~HplIkkL~~~~~~~~~~ 261 (334)
+-=+.+|+||||++|..+...+..+
T Consensus 14 RLE~d~p~~plv~~~~~L~q~Nms~ 38 (147)
T PF06112_consen 14 RLEADYPNHPLVAKLQALPQNNMSD 38 (147)
T ss_pred eecccCCCCHHHHHHHhhccCCCCH
Confidence 3446899999999999886655544
No 12
>KOG0019|consensus
Probab=72.11 E-value=6.1 Score=41.84 Aligned_cols=77 Identities=19% Similarity=0.126 Sum_probs=67.7
Q ss_pred ChhHHHHhccccCceEEEEeCCCHHHHhcChhHHHHHhCCcEEEeecCchhHHHHHhhhhcCCCceeeccccCCCCC
Q psy4716 81 EDEDYVARMKENQKQIYYITGETKDQVANSSFVERVKKRGFEVIYMTEPIDEYVVQQLKDYDGKTLVSVTKEGLELP 157 (334)
Q Consensus 81 tl~eYv~rmke~Qk~IYY~tg~s~~~~~~SP~lE~~k~kg~EVL~l~dpiDe~~i~~l~~y~gkkf~sV~~~~~~l~ 157 (334)
+.-.|+.+++..+.-+|+...-.+..+-.+-|-..=+++|+.+....-+||+.|.+.+.+|-++-..-|+++++.+.
T Consensus 270 ~d~lav~hf~~eg~lefrail~vP~rap~~lF~~~kk~n~i~Ly~rrv~I~d~~~~lipe~l~fv~gvVdSeDlPLN 346 (656)
T KOG0019|consen 270 DDPLYVLHFKTDGPLSIRSIFYIPKRAPNSMFDMRKKKNGIKLYARRVLITDDAGDLIPEWLRFVRGVVDSEDIPLN 346 (656)
T ss_pred cchhhHhhhccccceEEEEEEeccccCcchhhhhhhccCceEEEEEEEecCchhHHHHHHHhchheeccccccCccc
Confidence 35779999999998888888877777777778888889999999999999999999999999999989999988775
No 13
>PF12588 PSDC: Phophatidylserine decarboxylase ; InterPro: IPR022237 This domain family is found in bacteria and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF02666 from PFAM. Phosphatidylserine decarboxylase (PSD) is an important enzyme in the synthesis of phosphatidylethanolamine in both prokaryotes and eukaryotes.
Probab=62.21 E-value=20 Score=31.12 Aligned_cols=56 Identities=11% Similarity=0.242 Sum_probs=43.3
Q ss_pred ChHHHHHHHhhhcccchHHHHHHHHHhhhhh---hhhCC-C-CCCCHHHHHHHHHHHHHhccCC
Q psy4716 245 HSIVETLRQKADADKNDKAVKDLVNLLFETS---LLSSG-F-TLEEPQVHAARIHRMIKLGLGI 303 (334)
Q Consensus 245 HplIkkL~~~~~~~~~~~~~~~~a~~Lyd~A---lL~~G-~-~i~d~~~f~~ri~~ll~~~l~~ 303 (334)
||.|+.|.+++.. +..+..++.+.|++. .--.| . .+.|-..|..-++.+|..+=..
T Consensus 2 ~p~vqefk~lIe~---dp~l~ml~~~Mf~q~~~~~~p~g~~~~i~~~~~mL~~ln~i~t~AP~~ 62 (141)
T PF12588_consen 2 HPVVQEFKDLIES---DPRLYMLFTQMFDQPPYNADPTGNPPQIRDYDEMLQLLNHIMTTAPEF 62 (141)
T ss_pred ChHHHHHHHHHhc---CHHHHHHHHHHHhCcccccCCCCCccccccHHHHHHHHHHHHhhCCcc
Confidence 8999999999844 468999999999991 12235 3 5789999999999999765443
No 14
>TIGR01052 top6b DNA topoisomerase VI, B subunit. This model describes DNA topoisomerase VI, an archaeal type II DNA topoisomerase (DNA gyrase).
Probab=51.24 E-value=11 Score=39.05 Aligned_cols=58 Identities=17% Similarity=0.018 Sum_probs=36.2
Q ss_pred CccceeeeeecCe-----eEEEeecCC-CCceeeeeC-----CCCc-eEEeeCCCC-CCccEEEEeecccc
Q psy4716 1 MNGFYSAYLVADK-----VTVTSKHND-DEQYIWESS-----AGGS-FTIKPDNSQ-PLGRLLVEKEREKE 58 (334)
Q Consensus 1 gvGfyS~f~Va~~-----v~v~tr~~~-~~~~~w~s~-----~~g~-~~i~~~~~~-~~Gt~i~l~~~~~~ 58 (334)
|+|+.+|.++|.. |+|.|+..+ ..+|..+-. ..|. -...+.... .+||+|.++.....
T Consensus 105 GlGLs~~~~isq~~~G~~i~V~S~~~g~~~~~~~~~~id~~~n~G~i~~~~~~~~~~~~GT~V~v~f~~~~ 175 (488)
T TIGR01052 105 GIGISGAVLYSQMTTGKPVKVISSTGGEIYVYKMKLKIDVQKNEGEIVEKGEWNKPGWRGTRIELEFKGVS 175 (488)
T ss_pred cEehhHHHHHHHHcCCceEEEEEecCCceEEEEEEEEecccccCCeecceeecCCCCCCceEEEEEECCce
Confidence 8999999999874 999999863 334555532 2232 122233322 37999999854433
No 15
>PRK04184 DNA topoisomerase VI subunit B; Validated
Probab=43.17 E-value=20 Score=37.75 Aligned_cols=57 Identities=18% Similarity=0.074 Sum_probs=34.9
Q ss_pred CccceeeeeecC-----eeEEEeecCCCC-ceeeeeC-----CCCceEEe--eC-CCCCCccEEEEeecccc
Q psy4716 1 MNGFYSAYLVAD-----KVTVTSKHNDDE-QYIWESS-----AGGSFTIK--PD-NSQPLGRLLVEKEREKE 58 (334)
Q Consensus 1 gvGfyS~f~Va~-----~v~v~tr~~~~~-~~~w~s~-----~~g~~~i~--~~-~~~~~Gt~i~l~~~~~~ 58 (334)
|+|+.+|.+++. .|+|.|+..+.. ++..+=. ..|. .+. .. ....+||+|.+.+....
T Consensus 115 GLGLsiv~~isq~~~G~~I~V~S~~~~g~~~~~~~l~id~~kn~g~-i~~~~~~~~~~~~GT~V~V~l~~~~ 185 (535)
T PRK04184 115 GIGISAAVLYAQMTTGKPVRVISSTGGSKKAYYFELKIDTKKNEPI-ILEREEVDWDRWHGTRVELEIEGDW 185 (535)
T ss_pred CcchHHHHHHHHHhcCCcEEEEEecCCCceEEEEEEEecccccCCe-eccccccCCCCCCCEEEEEEECCcC
Confidence 899999998876 488999875433 4443321 2221 111 11 13468999999975443
No 16
>PRK00095 mutL DNA mismatch repair protein; Reviewed
Probab=40.19 E-value=33 Score=36.57 Aligned_cols=51 Identities=22% Similarity=0.315 Sum_probs=32.6
Q ss_pred CccceeeeeecCeeEEEeecC-CCCceeeeeCCCCceEEeeCCCCCCccEEEEe
Q psy4716 1 MNGFYSAYLVADKVTVTSKHN-DDEQYIWESSAGGSFTIKPDNSQPLGRLLVEK 53 (334)
Q Consensus 1 gvGfyS~f~Va~~v~v~tr~~-~~~~~~w~s~~~g~~~i~~~~~~~~Gt~i~l~ 53 (334)
|.|+.|.=-|+ +|+|+||.. ...+|.+.=.++..-.+.+.. .+.||+|+++
T Consensus 96 GeAL~sI~~vs-~l~i~s~~~~~~~~~~~~~~~G~~~~~~~~~-~~~GT~V~v~ 147 (617)
T PRK00095 96 GEALPSIASVS-RLTLTSRTADAAEGWQIVYEGGEIVEVKPAA-HPVGTTIEVR 147 (617)
T ss_pred hhHHHhhhhce-EEEEEEecCCCCceEEEEecCCcCcceeccc-CCCCCEEEec
Confidence 44455555566 899999986 456787765544222233332 3799999995
No 17
>COG0323 MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair]
Probab=39.15 E-value=37 Score=36.52 Aligned_cols=41 Identities=27% Similarity=0.427 Sum_probs=31.3
Q ss_pred CeeEEEeecC-CCCceeeeeCCCCce-EEeeCCCCCCccEEEEe
Q psy4716 12 DKVTVTSKHN-DDEQYIWESSAGGSF-TIKPDNSQPLGRLLVEK 53 (334)
Q Consensus 12 ~~v~v~tr~~-~~~~~~w~s~~~g~~-~i~~~~~~~~Gt~i~l~ 53 (334)
-|++|+||.+ ...+|.|.-.|++.= ++.++.. +.||+|..+
T Consensus 107 srlti~Srt~~~~~~~~~~~~g~~~~~~~~p~a~-~~GTtVeV~ 149 (638)
T COG0323 107 SRLTITSRTAEASEGTQIYAEGGGMEVTVKPAAH-PVGTTVEVR 149 (638)
T ss_pred heeEEEeecCCcCceEEEEecCCcccccccCCCC-CCCCEEEeh
Confidence 4799999975 578999999888765 5665544 679998754
No 18
>PF03562 MltA: MltA specific insert domain; InterPro: IPR005300 This group of proteins includes MltA; a membrane-bound, murein degrading transglycosylase enzyme which plays an important role in the controlled growth of the stress-bearing sacculus of Escherichia coli [, ].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 2PI8_D 2AE0_X 2PIC_A 2GAE_A 2PJJ_A 3CZB_A 2G6G_A 2PNW_A 2G5D_A.
Probab=35.11 E-value=26 Score=30.98 Aligned_cols=35 Identities=17% Similarity=0.604 Sum_probs=24.6
Q ss_pred EeCCCHHHHhcChhHHHHHhCCcEEEeecCchhHHHHHh
Q psy4716 99 ITGETKDQVANSSFVERVKKRGFEVIYMTEPIDEYVVQQ 137 (334)
Q Consensus 99 ~tg~s~~~~~~SP~lE~~k~kg~EVL~l~dpiDe~~i~~ 137 (334)
+.-.+|+++.+.. +..+|.|+.++.||+|-|++|-
T Consensus 50 ~Py~tR~eIe~g~----l~~~~~eiaw~~dpvd~fflqI 84 (158)
T PF03562_consen 50 VPYPTRAEIEDGA----LDGKGLEIAWLKDPVDAFFLQI 84 (158)
T ss_dssp EEG--HHHHHTTT----TTTSSCEEEEES-HHHHHHHHH
T ss_pred ccCCCHHHHhcCc----ccCCCCEEEEeCChHHhHHeee
Confidence 3345777777433 4569999999999999999964
No 19
>PRK05559 DNA topoisomerase IV subunit B; Reviewed
Probab=31.80 E-value=54 Score=35.21 Aligned_cols=58 Identities=10% Similarity=0.044 Sum_probs=36.9
Q ss_pred CccceeeeeecCeeEEEeecCCC-CceeeeeCCCCceE---EeeCCCCCCccEEEEeeccccc
Q psy4716 1 MNGFYSAYLVADKVTVTSKHNDD-EQYIWESSAGGSFT---IKPDNSQPLGRLLVEKEREKEL 59 (334)
Q Consensus 1 gvGfyS~f~Va~~v~v~tr~~~~-~~~~w~s~~~g~~~---i~~~~~~~~Gt~i~l~~~~~~~ 59 (334)
|||.-++=.++.+++|.|++.+. -...|+ .|.-.-. +.++.....||+|...+...-+
T Consensus 119 GvGls~vNalS~~l~V~s~r~g~~~~~~f~-~G~~~~~l~~~~~~~~~~~GT~V~f~PD~~iF 180 (631)
T PRK05559 119 GVGVSVVNALSSRLEVEVKRDGKVYRQRFE-GGDPVGPLEVVGTAGKRKTGTRVRFWPDPKIF 180 (631)
T ss_pred ccchhhhhhheeeEEEEEEeCCeEEEEEEE-CCcCccCccccccccCCCCCcEEEEEECHHHc
Confidence 78888888899999999998542 233454 2211111 2222225789999998855444
No 20
>PF08953 DUF1899: Domain of unknown function (DUF1899); InterPro: IPR015048 This set of proteins are found in various eukaryotic proteins. The function is unknown. ; PDB: 2B4E_A 2AQ5_A.
Probab=31.78 E-value=36 Score=25.58 Aligned_cols=19 Identities=42% Similarity=0.831 Sum_probs=12.0
Q ss_pred ceeeeeCCCCceEEeeCCC
Q psy4716 25 QYIWESSAGGSFTIKPDNS 43 (334)
Q Consensus 25 ~~~w~s~~~g~~~i~~~~~ 43 (334)
++.|++.|+|.|-|-|.+.
T Consensus 45 A~~~~~~GGG~~~Vlpl~~ 63 (65)
T PF08953_consen 45 AVPWESGGGGAFAVLPLNK 63 (65)
T ss_dssp EEEB--SSS--EEEEETT-
T ss_pred EEEeccCCccEEEEEeCCC
Confidence 6789999999999988754
No 21
>COG1480 Predicted membrane-associated HD superfamily hydrolase [General function prediction only]
Probab=31.08 E-value=26 Score=37.81 Aligned_cols=17 Identities=35% Similarity=0.763 Sum_probs=13.4
Q ss_pred ceEEE-cCCChHHHHHHH
Q psy4716 237 KHLEI-NPDHSIVETLRQ 253 (334)
Q Consensus 237 ~~LEI-Np~HplIkkL~~ 253 (334)
+-||+ ||||||.|+|+.
T Consensus 468 rL~ELsnpNhPLLkkll~ 485 (700)
T COG1480 468 RLLELSNPNHPLLKKLLT 485 (700)
T ss_pred hHHHhcCCCcHHHHHHHh
Confidence 44554 999999999985
No 22
>KOG0541|consensus
Probab=29.63 E-value=53 Score=29.28 Aligned_cols=37 Identities=19% Similarity=0.329 Sum_probs=29.5
Q ss_pred hHHHHHhCCcEEEeecCchhHHHHHhhh-hc---CCCceee
Q psy4716 112 FVERVKKRGFEVIYMTEPIDEYVVQQLK-DY---DGKTLVS 148 (334)
Q Consensus 112 ~lE~~k~kg~EVL~l~dpiDe~~i~~l~-~y---~gkkf~s 148 (334)
+.+.|++||++++++-.--|-|+++.-. .+ ...+|..
T Consensus 70 ~a~elksKGVd~iicvSVnDpFv~~aW~k~~g~~~~V~f~a 110 (171)
T KOG0541|consen 70 KADELKSKGVDEIICVSVNDPFVMKAWAKSLGANDHVKFVA 110 (171)
T ss_pred HHHHHHhcCCcEEEEEecCcHHHHHHHHhhcCccceEEEEe
Confidence 5778999999999999999999998766 34 3456654
No 23
>PF04282 DUF438: Family of unknown function (DUF438); InterPro: IPR007380 This is a a group of uncharacterised proteins.
Probab=29.17 E-value=1.3e+02 Score=23.17 Aligned_cols=31 Identities=23% Similarity=0.235 Sum_probs=23.2
Q ss_pred hhhhhhhhCCCCCCCHHHHHHHHHHHHHhcc
Q psy4716 271 LFETSLLSSGFTLEEPQVHAARIHRMIKLGL 301 (334)
Q Consensus 271 Lyd~AlL~~G~~i~d~~~f~~ri~~ll~~~l 301 (334)
.-+++||.+|+++++...+.+-=..+++.++
T Consensus 36 ~~Eq~Li~eG~~~eeiq~LCdvH~~lf~~~i 66 (71)
T PF04282_consen 36 AAEQELIQEGMPVEEIQKLCDVHAALFKGSI 66 (71)
T ss_pred HHHHHHHHcCCCHHHHHHHhHHHHHHHHHHH
Confidence 4578999999999998888775555555443
No 24
>COG4549 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.74 E-value=39 Score=30.20 Aligned_cols=97 Identities=9% Similarity=0.059 Sum_probs=56.1
Q ss_pred ccceeeeeecCeeEEEeecCCCCceeeeeCCCCceEEee-CCCC-CCccEEEEeecccccCchHHHHHhH-hhhhhccCC
Q psy4716 2 NGFYSAYLVADKVTVTSKHNDDEQYIWESSAGGSFTIKP-DNSQ-PLGRLLVEKEREKELSEDEEEEKKE-EEKEEDKTP 78 (334)
Q Consensus 2 vGfyS~f~Va~~v~v~tr~~~~~~~~w~s~~~g~~~i~~-~~~~-~~Gt~i~l~~~~~~~~~~~~~~~~~-~~~~~~k~p 78 (334)
++|.|.|+..-+|.|.+..+....| . .|+++- -..+ ..-|.|++++-+ -|..+.-..+.- +-...++.-
T Consensus 13 ~~~~~~~~AsAH~s~~~~ea~~gs~--~-----~atlrVPhgcdgkaTtkV~vklPe-Gvi~~kp~PkpGW~le~~Kg~y 84 (178)
T COG4549 13 ALSLSTFTASAHVSLETGEAAAGST--Y-----KATLRVPHGCDGKATTKVRVKLPE-GVIFAKPQPKPGWTLETIKGDY 84 (178)
T ss_pred HHHhccccceEEEEeccccccCCce--E-----EEEEecCCCCCCCcceEEEEeCCC-ceeeecccCCCCcEEEEeecce
Confidence 6789999999999999887543322 1 355552 1112 255889999844 443332100000 000011222
Q ss_pred CCChhHHHHhccccCceEEEEeCCCHHH
Q psy4716 79 KLEDEDYVARMKENQKQIYYITGETKDQ 106 (334)
Q Consensus 79 ~~tl~eYv~rmke~Qk~IYY~tg~s~~~ 106 (334)
..|.+.+=....++|++|++-.|++++.
T Consensus 85 ~~ty~~hG~~i~~G~~ev~w~~gnlPde 112 (178)
T COG4549 85 EKTYQNHGSGITSGVKEVFWKGGNLPDE 112 (178)
T ss_pred eeeeeccCCccccceeEEEeccCCCchh
Confidence 3455666667778999999999987654
No 25
>COG4813 ThuA Trehalose utilization protein [Carbohydrate transport and metabolism]
Probab=26.86 E-value=36 Score=31.31 Aligned_cols=21 Identities=24% Similarity=0.439 Sum_probs=18.0
Q ss_pred CcceEEEcCCChHHHHHHHhh
Q psy4716 235 AKKHLEINPDHSIVETLRQKA 255 (334)
Q Consensus 235 ~k~~LEINp~HplIkkL~~~~ 255 (334)
..++-.|||.|||-+.|-..+
T Consensus 126 rERvWvvnp~HPIA~GigE~~ 146 (261)
T COG4813 126 RERVWVVNPGHPIAEGIGESF 146 (261)
T ss_pred ceeEEEeCCCCchhhcchhhE
Confidence 468999999999999997654
No 26
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=26.67 E-value=97 Score=23.43 Aligned_cols=49 Identities=10% Similarity=0.356 Sum_probs=30.2
Q ss_pred ChhHHHHhccccCceEEEEeCCCHHHHhcChhHHHHHhCCcE-EEeecCchhHH
Q psy4716 81 EDEDYVARMKENQKQIYYITGETKDQVANSSFVERVKKRGFE-VIYMTEPIDEY 133 (334)
Q Consensus 81 tl~eYv~rmke~Qk~IYY~tg~s~~~~~~SP~lE~~k~kg~E-VL~l~dpiDe~ 133 (334)
.+.++....+.+++-|.|+.+..+ ..-....++..||. |.++...+.++
T Consensus 45 ~~~~~~~~~~~~~~ivv~c~~g~~----s~~a~~~l~~~G~~~v~~l~gG~~~w 94 (96)
T cd01444 45 SLDDWLGDLDRDRPVVVYCYHGNS----SAQLAQALREAGFTDVRSLAGGFEAW 94 (96)
T ss_pred HHHHHHhhcCCCCCEEEEeCCCCh----HHHHHHHHHHcCCceEEEcCCCHHHh
Confidence 345566666655555556655433 23345677888984 88888777654
No 27
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=26.58 E-value=1.3e+02 Score=22.82 Aligned_cols=47 Identities=15% Similarity=0.270 Sum_probs=28.2
Q ss_pred hHHHHhccccCceEEEEeCCCHHHHhcChhHHHHHhCCcEEEeecCchhHH
Q psy4716 83 EDYVARMKENQKQIYYITGETKDQVANSSFVERVKKRGFEVIYMTEPIDEY 133 (334)
Q Consensus 83 ~eYv~rmke~Qk~IYY~tg~s~~~~~~SP~lE~~k~kg~EVL~l~dpiDe~ 133 (334)
...+..+..++.-|.|+.+..+ ..-....|+..|++|..|...+..+
T Consensus 42 ~~~~~~~~~~~~vvl~c~~g~~----a~~~a~~L~~~G~~v~~l~GG~~~w 88 (90)
T cd01524 42 RDRLNELPKDKEIIVYCAVGLR----GYIAARILTQNGFKVKNLDGGYKTY 88 (90)
T ss_pred HHHHHhcCCCCcEEEEcCCChh----HHHHHHHHHHCCCCEEEecCCHHHh
Confidence 3344444445554556544322 2234557889999999998877554
No 28
>PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ.
Probab=25.83 E-value=54 Score=29.13 Aligned_cols=28 Identities=25% Similarity=0.450 Sum_probs=24.6
Q ss_pred ceEEEEeCCCHHHHhcChhHHHHHhCCc
Q psy4716 94 KQIYYITGETKDQVANSSFVERVKKRGF 121 (334)
Q Consensus 94 k~IYY~tg~s~~~~~~SP~lE~~k~kg~ 121 (334)
.-|.|++|++-...++.|+++++++.++
T Consensus 40 rviq~iAGr~sake~N~~l~~aik~a~f 67 (160)
T PF09695_consen 40 RVIQHIAGRSSAKEMNAPLIEAIKAAKF 67 (160)
T ss_pred EEEEEeccCCchhHhhHHHHHHHHHcCC
Confidence 3499999999999999999999998754
No 29
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=25.17 E-value=71 Score=31.95 Aligned_cols=45 Identities=22% Similarity=0.542 Sum_probs=33.9
Q ss_pred hcChhHHHHHhCCcEEEeecCchhHHHHHhhhhcCCCceeeccccCCCC
Q psy4716 108 ANSSFVERVKKRGFEVIYMTEPIDEYVVQQLKDYDGKTLVSVTKEGLEL 156 (334)
Q Consensus 108 ~~SP~lE~~k~kg~EVL~l~dpiDe~~i~~l~~y~gkkf~sV~~~~~~l 156 (334)
.++|+.+-|+++|+.|||..|.+|+-++.... .++.++|+..+.+
T Consensus 296 ~~np~~~~l~~~~ipVlf~~d~L~~~~v~ea~----rql~~~dk~~iaF 340 (360)
T PF07429_consen 296 RDNPFWQDLKEQGIPVLFYGDELDEALVREAQ----RQLANVDKQQIAF 340 (360)
T ss_pred cCChHHHHHHhCCCeEEeccccCCHHHHHHHH----HHHhhCcccceee
Confidence 35899999999999999999999998886643 2344555544333
No 30
>PRK11162 mltA murein transglycosylase A; Provisional
Probab=23.84 E-value=47 Score=33.15 Aligned_cols=30 Identities=17% Similarity=0.516 Sum_probs=25.4
Q ss_pred CCHHHHhcChhHHHHHhCCcEEEeecCchhHHHH
Q psy4716 102 ETKDQVANSSFVERVKKRGFEVIYMTEPIDEYVV 135 (334)
Q Consensus 102 ~s~~~~~~SP~lE~~k~kg~EVL~l~dpiDe~~i 135 (334)
++|+++.+. .+..+|.|+.++.||||-|++
T Consensus 151 ptRaeI~~g----aL~g~gleLaw~~dpvD~Ffl 180 (355)
T PRK11162 151 PSRAEIYAG----ALSGKGLELAYSNSLIDNFIM 180 (355)
T ss_pred CCHHHHhcC----cccCCCCEEEEeCCHHHhHhe
Confidence 488888753 466799999999999999999
No 31
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=23.72 E-value=1.5e+02 Score=23.94 Aligned_cols=50 Identities=28% Similarity=0.401 Sum_probs=31.7
Q ss_pred EEEeCCCHHHHhcChh---HHHHHhCCcEEEeecCchhHHHHHhhhhcCCCceeecccc
Q psy4716 97 YYITGETKDQVANSSF---VERVKKRGFEVIYMTEPIDEYVVQQLKDYDGKTLVSVTKE 152 (334)
Q Consensus 97 YY~tg~s~~~~~~SP~---lE~~k~kg~EVL~l~dpiDe~~i~~l~~y~gkkf~sV~~~ 152 (334)
..+++.++-.+ .|+ .+.++++|+||.+++.+-=+..+ +-.|..|..+..+
T Consensus 2 li~~~Gt~Ghv--~P~lala~~L~~rGh~V~~~~~~~~~~~v----~~~Gl~~~~~~~~ 54 (139)
T PF03033_consen 2 LIATGGTRGHV--YPFLALARALRRRGHEVRLATPPDFRERV----EAAGLEFVPIPGD 54 (139)
T ss_dssp EEEEESSHHHH--HHHHHHHHHHHHTT-EEEEEETGGGHHHH----HHTT-EEEESSSC
T ss_pred EEEEcCChhHH--HHHHHHHHHHhccCCeEEEeecccceecc----cccCceEEEecCC
Confidence 34455554333 344 46788999999998886644444 4578999888775
No 32
>PF04122 CW_binding_2: Putative cell wall binding repeat 2; InterPro: IPR007253 This repeat is found in multiple tandem copies in proteins including amidase enhancers [] and adhesins [].
Probab=23.71 E-value=3.2e+02 Score=20.96 Aligned_cols=55 Identities=16% Similarity=0.320 Sum_probs=42.4
Q ss_pred cCceEEEEeCCCH-HHHhcChhHHHHHhCCcEEEeecCchhHHHHHhhhhcCCCceeec
Q psy4716 92 NQKQIYYITGETK-DQVANSSFVERVKKRGFEVIYMTEPIDEYVVQQLKDYDGKTLVSV 149 (334)
Q Consensus 92 ~Qk~IYY~tg~s~-~~~~~SP~lE~~k~kg~EVL~l~dpiDe~~i~~l~~y~gkkf~sV 149 (334)
..+.+|.++|.+. +.+..+|+.- +.|..+||..+.++..+...|..+...+..-|
T Consensus 24 ~~~~v~ia~g~~~~Dalsa~~~a~---~~~~PIll~~~~l~~~~~~~l~~~~~~~v~ii 79 (92)
T PF04122_consen 24 KSDKVYIASGDNFADALSASPLAA---KNNAPILLVNNSLPSSVKAFLKSLNIKKVYII 79 (92)
T ss_pred CCCEEEEEeCcchhhhhhhHHHHH---hcCCeEEEECCCCCHHHHHHHHHcCCCEEEEE
Confidence 4577999999875 4455566543 47899999999999999999998876666655
No 33
>COG4463 CtsR Transcriptional repressor of class III stress genes [Transcription]
Probab=22.96 E-value=89 Score=27.26 Aligned_cols=71 Identities=21% Similarity=0.428 Sum_probs=49.3
Q ss_pred EEEeeccCCCceEEEecCCcchHHHHHHHHHhhccCCcccccccCcceEEEcCCChHHHHHHHhhhcccchHHHHHHHHH
Q psy4716 191 VIVSNRLVDSPCCIVTSQYGWTANMERIMKAQALRDTSTMGYMAAKKHLEINPDHSIVETLRQKADADKNDKAVKDLVNL 270 (334)
Q Consensus 191 V~vS~rL~~sPa~lv~~e~g~s~~M~r~mk~q~~~~~~~~~~~~~k~~LEINp~HplIkkL~~~~~~~~~~~~~~~~a~~ 270 (334)
-.++.|.+.+--.+|-+.- . + .|+.. =.-.+.|-+|.+|..|..++...-....+.+++..
T Consensus 44 YVIkTRFT~erGY~VESKR------------G----G--GGYIR-I~Kv~~~~~~~~i~~l~~~I~~~iSq~~~~dII~~ 104 (153)
T COG4463 44 YVIKTRFTEERGYLVESKR------------G----G--GGYIR-IIKVEYSDNHELINALLQLIGKSISQQAAEDIIQL 104 (153)
T ss_pred eeeeeeeecccceEEEeec------------C----C--CceEE-EEEecccchHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 3567777777777776631 1 1 13322 12467788999999999987655556678899999
Q ss_pred hhhhhhhhCC
Q psy4716 271 LFETSLLSSG 280 (334)
Q Consensus 271 Lyd~AlL~~G 280 (334)
|||.-+|+.-
T Consensus 105 Lfde~liter 114 (153)
T COG4463 105 LFDEKLITER 114 (153)
T ss_pred HHHhhhhhHH
Confidence 9998887763
No 34
>TIGR01055 parE_Gneg DNA topoisomerase IV, B subunit, proteobacterial. This protein is active as an alpha(2)beta(2) heterotetramer.
Probab=21.98 E-value=71 Score=34.27 Aligned_cols=59 Identities=8% Similarity=0.051 Sum_probs=38.4
Q ss_pred CccceeeeeecCeeEEEeecCCCCceeeeeCCCCc---eE-EeeCCCCCCccEEEEeecccccC
Q psy4716 1 MNGFYSAYLVADKVTVTSKHNDDEQYIWESSAGGS---FT-IKPDNSQPLGRLLVEKEREKELS 60 (334)
Q Consensus 1 gvGfyS~f~Va~~v~v~tr~~~~~~~~w~s~~~g~---~~-i~~~~~~~~Gt~i~l~~~~~~~~ 60 (334)
|+|.-|.=.+|.+++|.|++.+.. |.++-.++.. -. |.++...+.||+|...+-++.+.
T Consensus 112 GvGls~vnalS~~l~v~~~r~g~~-~~~~~~~G~~~~~~~~i~~~~~~~~GT~V~F~PD~~~F~ 174 (625)
T TIGR01055 112 GVGISVVNALSKRVKIKVYRQGKL-YSIAFENGAKVTDLISAGTCGKRLTGTSVHFTPDPEIFD 174 (625)
T ss_pred chhHHHHHHhcCeEEEEEEECCeE-EEEEEECCeEccccccccccCCCCCCeEEEEEECHHHCC
Confidence 788888888999999999975432 5544433321 11 11232345999999988776653
No 35
>PRK14868 DNA topoisomerase VI subunit B; Provisional
Probab=20.85 E-value=66 Score=35.45 Aligned_cols=53 Identities=17% Similarity=0.137 Sum_probs=34.1
Q ss_pred CccceeeeeecCe-----eEEEeecC-CCCceeeeeCCCCc----e----EEeeCCCCCCccEEEEee
Q psy4716 1 MNGFYSAYLVADK-----VTVTSKHN-DDEQYIWESSAGGS----F----TIKPDNSQPLGRLLVEKE 54 (334)
Q Consensus 1 gvGfyS~f~Va~~-----v~v~tr~~-~~~~~~w~s~~~g~----~----~i~~~~~~~~Gt~i~l~~ 54 (334)
|+|+-+|.+++.- |.|.|+.. ...++.|+=.-++. - ...+. ..++||+|.+++
T Consensus 122 G~GLglai~~sqlt~GgpI~I~S~~~~~~~g~~~~L~Id~gkNep~I~~~~~~~~-~~~~GT~IeV~L 188 (795)
T PRK14868 122 GIGISAAVLYSQLTSGKPAKITSRTQGSEEAQYFELIIDTDTNEPEISVEETTTW-DRPHGTRIELEM 188 (795)
T ss_pred ceehHHHHHHHHHcCCCcEEEEeCCCCCCceeEEEEEEecCCCccceecceeccc-CCCCceEEEEEE
Confidence 7888888888864 89999985 34566444322222 1 22222 247999999986
No 36
>cd03142 GATase1_ThuA Type 1 glutamine amidotransferase (GATase1)-like domain found in Sinorhizobium meliloti Rm1021 ThuA (SmThuA). Type 1 glutamine amidotransferase (GATase1)-like domain found in Sinorhizobium meliloti Rm1021 ThuA (SmThuA). This group includes proteins similar to SmThuA which plays a role in a major pathway for trehalose catabolism. SmThuA is induced by trehalose but not by related structurally similar disaccharides like sucrose or maltose. Proteins in this group lack the catalytic triad of typical GATase1 domains: a His replaces the reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. S. meliloti Rm1021 thuA mutants are impaired in competitive colonization of Medicago sativa roots but are more competitive than the wild-type Rml021 in infecting alfalfa roots and forming nitrogen-fixing nodules.
Probab=20.70 E-value=2.7e+02 Score=25.77 Aligned_cols=109 Identities=14% Similarity=0.187 Sum_probs=52.5
Q ss_pred hHHHHHhCCcEEEe--ecCchhHHHHHhhhhcCCCceee-ccccCCCCCCchHHHhhhhhhHHHHHHHHHHHHHhhcccc
Q psy4716 112 FVERVKKRGFEVIY--MTEPIDEYVVQQLKDYDGKTLVS-VTKEGLELPEDEEEKKKREEDKVKFENLCKVMKDILDKKV 188 (334)
Q Consensus 112 ~lE~~k~kg~EVL~--l~dpiDe~~i~~l~~y~gkkf~s-V~~~~~~l~~~e~~k~~~~~~~~e~~~L~~~~K~~L~~~V 188 (334)
+...++..|++|-+ ++||-=.+--..|.+|+-.-|-+ ...+. ...+..+.|.++++.=.|
T Consensus 28 ~~~~L~~~gf~V~~~~~~d~~~~~~~~~L~~~D~lV~~~~~~~~~--------------l~~eq~~~l~~~V~~GgG--- 90 (215)
T cd03142 28 IAAALAEYGFDVQTATLDEPEHGLTEEVLAETDVLLWWGHIAHDE--------------VKDEIVERVHRRVLDGMG--- 90 (215)
T ss_pred HHHHHHhcCcEEEEEeccCccccCCHhHHhcCCEEEEeCCCCcCc--------------CCHHHHHHHHHHHHcCCC---
Confidence 55677789999983 33332001113466777666632 22221 123345568777766433
Q ss_pred eEEEEeeccCCCceEEEecCCcchHHHHHHHHHhhccCCcccccccCcceEEEcCCChHHHHHHH
Q psy4716 189 EKVIVSNRLVDSPCCIVTSQYGWTANMERIMKAQALRDTSTMGYMAAKKHLEINPDHSIVETLRQ 253 (334)
Q Consensus 189 ~~V~vS~rL~~sPa~lv~~e~g~s~~M~r~mk~q~~~~~~~~~~~~~k~~LEINp~HplIkkL~~ 253 (334)
.++.+..-.|.-..+||-.+-.-.- ...+...++-..||+|||.+.|-+
T Consensus 91 --------------lv~lHsg~~s~~y~~lvGg~f~~~~--h~~~~~~~v~v~~p~HPIt~Gl~~ 139 (215)
T cd03142 91 --------------LIVLHSGHYSKIFKKLMGTTCTLKW--REAGERERVWVVEPGHPITDGIPE 139 (215)
T ss_pred --------------EEEECCCcCCHHHHHhhCCccccee--cCCCceeEEEEecCCCchhcCCCC
Confidence 2222211124445555533210000 000111234457999999998854
No 37
>smart00433 TOP2c TopoisomeraseII. Eukaryotic DNA topoisomerase II, GyrB, ParE
Probab=20.46 E-value=1.1e+02 Score=32.54 Aligned_cols=55 Identities=16% Similarity=0.096 Sum_probs=35.7
Q ss_pred CccceeeeeecCeeEEEeecCCCCceeeeeCCCCc----eEEeeCCCCCCccEEEEeeccc
Q psy4716 1 MNGFYSAYLVADKVTVTSKHNDDEQYIWESSAGGS----FTIKPDNSQPLGRLLVEKEREK 57 (334)
Q Consensus 1 gvGfyS~f~Va~~v~v~tr~~~~~~~~w~s~~~g~----~~i~~~~~~~~Gt~i~l~~~~~ 57 (334)
|+|.-|+=.++.+++|.|+..+. .|.++-...|. -++.+.. .+.||+|...+-+.
T Consensus 83 G~Gls~vnalS~~l~v~~~~~g~-~~~~~~~~~G~~~~~~~~~~~~-~~~GT~V~F~Pd~~ 141 (594)
T smart00433 83 GVGASVVNALSTEFEVEVARDGK-EYKQSFSNNGKPLSEPKIIGDT-KKDGTKVTFKPDLE 141 (594)
T ss_pred cchHHHHHHhcCceEEEEEeCCc-EEEEEEeCCCeECccceecCCC-CCCCcEEEEEECHH
Confidence 78888998999999999998633 24433322232 1222232 37999999766443
Done!