Query psy4716
Match_columns 334
No_of_seqs 270 out of 1955
Neff 6.2
Searched_HMMs 29240
Date Sat Aug 17 00:01:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4716.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4716hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2o1u_A Endoplasmin; GRP94, HSP 100.0 7.7E-73 2.6E-77 586.8 31.0 228 79-306 433-664 (666)
2 2cg9_A ATP-dependent molecular 100.0 1.9E-71 6.6E-76 576.7 18.6 223 79-302 454-677 (677)
3 3q6m_A Heat shock protein HSP 100.0 5.4E-68 1.8E-72 526.1 20.7 248 79-326 184-432 (448)
4 2ioq_A Chaperone protein HTPG; 100.0 4.9E-67 1.7E-71 541.3 20.9 210 79-298 413-623 (624)
5 3hjc_A Heat shock protein 83-1 100.0 9.5E-65 3.2E-69 504.2 23.6 228 79-306 200-427 (444)
6 2cge_A ATP-dependent molecular 100.0 2.2E-61 7.6E-66 477.2 24.9 223 79-302 182-405 (405)
7 1y4s_A Chaperone protein HTPG; 100.0 7.2E-51 2.5E-55 416.1 7.9 145 79-223 413-558 (559)
8 1sf8_A Chaperone protein HTPG; 100.0 6.9E-37 2.4E-41 257.6 13.1 114 175-298 12-125 (126)
9 1hk7_A Heat shock protein HSP8 100.0 1.7E-29 5.7E-34 238.2 6.7 108 78-186 181-288 (288)
10 2gq0_A Chaperone protein HTPG; 100.0 2.5E-29 8.5E-34 238.6 5.8 110 78-207 184-295 (303)
11 3pry_A Heat shock protein HSP 99.9 7.3E-25 2.5E-29 204.9 7.8 80 79-158 184-263 (268)
12 1usu_A Heat shock protein HSP8 99.9 4.1E-24 1.4E-28 199.2 6.7 74 79-152 184-257 (260)
13 1y6z_A Heat shock protein, put 99.9 2.8E-22 9.7E-27 187.5 6.2 76 78-153 186-263 (263)
14 3ied_A Heat shock protein; HSP 99.7 2.5E-17 8.4E-22 153.2 6.9 63 1-64 179-249 (272)
15 3nmq_A Heat shock protein HSP 99.7 5.8E-17 2E-21 149.7 7.0 64 1-64 134-199 (239)
16 3peh_A Endoplasmin homolog; st 99.6 1.4E-16 4.9E-21 150.1 6.8 63 1-63 142-207 (281)
17 1qy5_A Endoplasmin; GRP94, NEC 99.5 2.8E-14 9.5E-19 134.1 7.1 60 1-61 128-190 (269)
18 3o0i_A HSP90AA1 protein; HSP90 99.4 8.7E-14 3E-18 129.7 6.9 63 1-63 155-219 (256)
19 3t0h_A Heat shock protein HSP 99.4 2.2E-13 7.4E-18 125.1 7.0 61 1-61 127-189 (228)
20 2gqp_A Endoplasmin; GRP94, HSP 99.3 1.1E-12 3.8E-17 120.8 7.0 57 1-58 132-191 (236)
21 2wer_A ATP-dependent molecular 99.3 6.1E-12 2.1E-16 114.5 7.0 58 1-58 121-181 (220)
22 1yc1_A HSP 86, heat shock prot 99.2 6.3E-12 2.2E-16 117.7 6.5 58 1-58 163-222 (264)
23 2ior_A Chaperone protein HTPG; 99.1 1.2E-10 4E-15 107.2 6.1 58 1-58 144-204 (235)
24 1h7s_A PMS1 protein homolog 2; 97.4 0.0001 3.6E-09 71.6 4.7 52 1-53 108-160 (365)
25 3h4l_A DNA mismatch repair pro 97.3 0.00014 4.9E-09 70.8 3.9 52 1-53 99-150 (367)
26 1b63_A MUTL; DNA mismatch repa 97.1 0.00034 1.2E-08 67.0 4.2 51 1-53 98-150 (333)
27 3na3_A DNA mismatch repair pro 95.5 0.0051 1.7E-07 59.4 2.5 50 1-53 102-154 (348)
28 1mu5_A Type II DNA topoisomera 80.7 0.64 2.2E-05 46.4 2.1 56 1-56 110-179 (471)
29 1kij_A DNA gyrase subunit B; t 79.5 0.61 2.1E-05 45.4 1.5 56 1-57 114-173 (390)
30 2zbk_B Type 2 DNA topoisomeras 63.6 3.3 0.00011 41.8 2.6 56 1-56 109-178 (530)
31 3fv5_A DNA topoisomerase 4 sub 58.1 4.3 0.00015 35.7 2.0 57 1-59 99-160 (201)
32 2q2e_B Type 2 DNA topoisomeras 51.8 5.9 0.0002 40.8 2.1 55 1-55 114-181 (621)
33 3iwh_A Rhodanese-like domain p 41.2 16 0.00056 28.0 2.7 48 82-133 46-93 (103)
34 3eme_A Rhodanese-like domain p 34.9 24 0.00082 26.5 2.7 48 82-133 46-93 (103)
35 3foj_A Uncharacterized protein 33.4 31 0.0011 25.7 3.2 47 83-133 47-93 (100)
36 1s16_A Topoisomerase IV subuni 29.2 37 0.0013 32.7 3.6 58 1-59 113-174 (390)
37 3gk5_A Uncharacterized rhodane 28.5 50 0.0017 25.0 3.7 48 86-137 49-96 (108)
38 2pnw_A AGR_C_15P, membrane-bou 25.7 29 0.00098 33.6 2.1 31 102-136 157-187 (380)
39 4emv_A DNA topoisomerase IV, B 25.3 59 0.002 28.9 3.9 57 1-59 121-183 (226)
40 2g5d_A GNA33; hydrolase, beta 25.1 33 0.0011 33.7 2.4 32 102-137 211-242 (422)
41 3s99_A Basic membrane lipoprot 23.7 1.1E+02 0.0039 28.6 5.9 44 108-151 74-118 (356)
42 1mgs_A Human melanoma growth s 21.8 67 0.0023 23.1 3.0 20 236-255 47-66 (73)
No 1
>2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96; HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A* 2o1w_A 2o1t_A
Probab=100.00 E-value=7.7e-73 Score=586.75 Aligned_cols=228 Identities=46% Similarity=0.810 Sum_probs=208.4
Q ss_pred CCChhHHHHhccccCceEEEEeCCCHHHHhcChhHHHHHhCCcEEEeecCchhHHHHHhhhhcCCCceeeccccCCCCCC
Q psy4716 79 KLEDEDYVARMKENQKQIYYITGETKDQVANSSFVERVKKRGFEVIYMTEPIDEYVVQQLKDYDGKTLVSVTKEGLELPE 158 (334)
Q Consensus 79 ~~tl~eYv~rmke~Qk~IYY~tg~s~~~~~~SP~lE~~k~kg~EVL~l~dpiDe~~i~~l~~y~gkkf~sV~~~~~~l~~ 158 (334)
.+||+||++|||++|+.|||++|+|++++++|||+|.|++||||||||++||||||+++|.+|+|++|+||+++++++++
T Consensus 433 ~~sL~eYv~rmke~Q~~IyY~t~~~~~~~~~sp~~e~~~~kg~eVl~l~~~iDe~~~~~l~e~~gk~~~~v~~~~~~l~~ 512 (666)
T 2o1u_A 433 ITSLDQYVERMKEKQDKIYFMAGSSRKEAESSPFVERLLKKGYEVIYLTEPVDEYCIQALPEFDGKRFQNVAKEGVKFDE 512 (666)
T ss_dssp EECHHHHHHHSCTTCCEEEEEECSSHHHHHTCGGGHHHHHTTCCCEEECSTHHHHHHHTCCCBTTBEEEETTBSCCCCCC
T ss_pred eeeHHHHHHhcccccceEEEEeCCCHHHHhhCcHHHHHHhCCceEEEeCCchHHHHHHHHHhcCCCceEEeccccccccc
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred chHHHhhhhhhHHHHHHHHHHHHHh-hcccceEEEEeeccCCCceEEEecCCcchHHHHHHHHHhhcc---CCccccccc
Q psy4716 159 DEEEKKKREEDKVKFENLCKVMKDI-LDKKVEKVIVSNRLVDSPCCIVTSQYGWTANMERIMKAQALR---DTSTMGYMA 234 (334)
Q Consensus 159 ~e~~k~~~~~~~~e~~~L~~~~K~~-L~~~V~~V~vS~rL~~sPa~lv~~e~g~s~~M~r~mk~q~~~---~~~~~~~~~ 234 (334)
.+++++..+..++++++|++|||++ |+++|.+|++|+||++||||||++++|||++|||||++|+++ +++++++|.
T Consensus 513 ~~~~~~~~~~~~~~~~~l~~~~k~~~L~~~v~~V~~s~rl~~sP~~lv~~~~~~s~~m~r~~~~~~~~~~~~~~~~~~~~ 592 (666)
T 2o1u_A 513 SEKTKESREAIEKEFEPLLNWMKDKALKDKIEKAVVSQRLTESPCALVASQYGWSGNMERIMKAQAYQTGKDISTNYYAS 592 (666)
T ss_dssp CHHHHHHHHHHHHHSHHHHHHHHHTTTTTTEEEEEECSSCSSCSEEEEBCTTSCCHHHHHHHHHHHHHTSCCCCSCSSSS
T ss_pred chhhhhhhhhhHHhHHHHHHHHHhccCCCceeEEEEeecCCCCCeEEEecCcccCHHHHHHHHHhhhhcccCcccccccc
Confidence 6655555566678899999999999 999999999999999999999999999999999999999872 333445678
Q ss_pred CcceEEEcCCChHHHHHHHhhhcccchHHHHHHHHHhhhhhhhhCCCCCCCHHHHHHHHHHHHHhccCCCCc
Q psy4716 235 AKKHLEINPDHSIVETLRQKADADKNDKAVKDLVNLLFETSLLSSGFTLEEPQVHAARIHRMIKLGLGIEDE 306 (334)
Q Consensus 235 ~k~~LEINp~HplIkkL~~~~~~~~~~~~~~~~a~~Lyd~AlL~~G~~i~d~~~f~~ri~~ll~~~l~~~~~ 306 (334)
.+++|||||+||||++|+++...+++++.++++|+||||+|+|++|+.++||+.|++|+++||.++|+++.+
T Consensus 593 ~k~~LeiNp~H~li~~l~~~~~~~~~~~~~~~~~~~l~d~All~~G~~~~dp~~f~~r~~~ll~~~l~~~~~ 664 (666)
T 2o1u_A 593 QKKTFEINPRHPLIKDMLRRVKEDEDDKTVSDLAVVLFETATLRSGYLLPDTKAYGDRIERMLRLSLNIDPD 664 (666)
T ss_dssp CCEEEEECTTSHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHTCCCSCHHHHHHHHHHHHHTTSCC---
T ss_pred cCeeeEECCCCHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhcCCCcc
Confidence 899999999999999998866656667789999999999999999999999999999999999999999754
No 2
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-71 Score=576.68 Aligned_cols=223 Identities=52% Similarity=0.887 Sum_probs=193.7
Q ss_pred CCChhHHHHhccccCceEEEEeCCCHHHHhcChhHHHHHhCCcEEEeecCchhHHHHHhhhhcCCCceeeccccCCCCCC
Q psy4716 79 KLEDEDYVARMKENQKQIYYITGETKDQVANSSFVERVKKRGFEVIYMTEPIDEYVVQQLKDYDGKTLVSVTKEGLELPE 158 (334)
Q Consensus 79 ~~tl~eYv~rmke~Qk~IYY~tg~s~~~~~~SP~lE~~k~kg~EVL~l~dpiDe~~i~~l~~y~gkkf~sV~~~~~~l~~ 158 (334)
.+||++|++|||++|+.|||++|+|++++++|||+|.|++||||||||++|||+||+++|.+|+|++|+||+++ +++++
T Consensus 454 ~~sL~eYv~rmke~Q~~IyY~t~~s~~~~~~sp~~E~~~~kg~EVl~l~~~iDe~~~~~l~e~~gk~~~~v~k~-l~l~~ 532 (677)
T 2cg9_A 454 LTSLTDYVTRMPEHQKNIYYITGESLKAVEKSPFLDALKAKNFEVLFLTDPIDEYAFTQLKEFEGKTLVDITKD-FELEE 532 (677)
T ss_dssp CBCSTTHHHHSCTTCCEEEEEECSCSTTTTTCGGGHHHHTTTCCEEEECSHHHHHHHGGGSCBTTBEEECSCCC-CCSCS
T ss_pred eeeHHHHHHhccccCceEEEEeCCCHHHHHhCcHHHHHHhCCceEEEeCCchHHHHHHHHHHhCCceEEEeecc-ccccc
Confidence 37899999999999999999999999999999999999999999999999999999999999999999999999 98876
Q ss_pred chHHHhhhhhhHHHHHHHHHHHHHhhcccceEEEEeeccCCCceEEEecCCcchHHHHHHHHHhhccCCcccccccCcce
Q psy4716 159 DEEEKKKREEDKVKFENLCKVMKDILDKKVEKVIVSNRLVDSPCCIVTSQYGWTANMERIMKAQALRDTSTMGYMAAKKH 238 (334)
Q Consensus 159 ~e~~k~~~~~~~~e~~~L~~~~K~~L~~~V~~V~vS~rL~~sPa~lv~~e~g~s~~M~r~mk~q~~~~~~~~~~~~~k~~ 238 (334)
.+++++..+..+.++++|++|||++|+++|.+|++|.||++||||||++++|||++|+|||++|++++++++++|..+++
T Consensus 533 ~e~~~~~~~~~~~~~~~L~~~~k~~L~~~v~~V~~s~rl~~sP~~lv~~~~~~s~~merimka~~~~d~~~~~~~~~k~~ 612 (677)
T 2cg9_A 533 TDEEKAEREKEIKEYEPLTKALKEILGDQVEKVVVSYKLLDAPAAIRTGQFGWSANMERIMKAQALRDSSMSSYMSSKKT 612 (677)
T ss_dssp STTSSTTHHHHHGGGHHHHHHHHHTTCSSCSCEECCSSCSSSCEEEECCTTSCCHHHHHHHTTCC-------------CE
T ss_pred chhhhhhhhhhHHHHHHHHHHHHHhcCCcceEEEEeccCCCCCEEEEeCcccccHHHHHHHHHhhccccccccccccCce
Confidence 54444444556778999999999999999999999999999999999999999999999999988765555566778999
Q ss_pred EEEcCCChHHHHHHHhhhcc-cchHHHHHHHHHhhhhhhhhCCCCCCCHHHHHHHHHHHHHhccC
Q psy4716 239 LEINPDHSIVETLRQKADAD-KNDKAVKDLVNLLFETSLLSSGFTLEEPQVHAARIHRMIKLGLG 302 (334)
Q Consensus 239 LEINp~HplIkkL~~~~~~~-~~~~~~~~~a~~Lyd~AlL~~G~~i~d~~~f~~ri~~ll~~~l~ 302 (334)
|||||+||||++|+.+...+ .+++.++++|++|||+|||++|+.++||+.|++|+++||.++||
T Consensus 613 LeiNp~hpli~~L~~~~~~d~~~~~~~~~~~~~Lyd~All~~G~~l~dp~~f~~ri~~ll~~~l~ 677 (677)
T 2cg9_A 613 FEISPKSPIIKELKKRVDEGGAQDKTVKDLTKLLYETALLTSGFSLDEPTSFASRINRLISLGLN 677 (677)
T ss_dssp EEECTTCHHHHHHHHHHHTCCSSCSSSSTTHHHHHHHHHHHTTCCCSSTTHHHHHHHHTSSSSCC
T ss_pred EEEcCCCHHHHHHHHhhhccccCHHHHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHHHHHhcC
Confidence 99999999999998865443 45567899999999999999999999999999999999987765
No 3
>3q6m_A Heat shock protein HSP 90-alpha; three domains, trimer of dimer, hexamer, chaperone; 3.00A {Homo sapiens} PDB: 3q6n_A
Probab=100.00 E-value=5.4e-68 Score=526.09 Aligned_cols=248 Identities=77% Similarity=1.160 Sum_probs=200.8
Q ss_pred CCChhHHHHhccccCceEEEEeCCCHHHHhcChhHHHHHhCCcEEEeecCchhHHHHHhhhhcCCCceeeccccCCCCCC
Q psy4716 79 KLEDEDYVARMKENQKQIYYITGETKDQVANSSFVERVKKRGFEVIYMTEPIDEYVVQQLKDYDGKTLVSVTKEGLELPE 158 (334)
Q Consensus 79 ~~tl~eYv~rmke~Qk~IYY~tg~s~~~~~~SP~lE~~k~kg~EVL~l~dpiDe~~i~~l~~y~gkkf~sV~~~~~~l~~ 158 (334)
.+||++|++|||++|+.|||++|+|++++++|||+|.|++||||||||++|||+||+|+|.+|+|++|+||+++++++++
T Consensus 184 ~~SL~eYv~rmke~Qk~IYYitg~s~~~~~~sp~lE~~k~kG~EVL~l~d~iDe~~i~~L~ef~gk~~~sV~k~~l~l~~ 263 (448)
T 3q6m_A 184 MVSLKDYCTRMKENQKHIYYITGETKDQVANSAFVERLRKHGLEVIYMIEPIDEYCVQQLKEFEGKTLVSVTKEGLELPE 263 (448)
T ss_dssp CEEHHHHHHTCCSSCCEEEEEECSCHHHHHTSGGGHHHHHHTCCEEEECSTHHHHHTTTCCEETTEEEEETTBSCCCCCC
T ss_pred eEeHHHHHHhccccCceEEEEecCCHHHHHhChHHHHHHHCCCEEEEecCchHHHHHHHHHhhCCceEEEecccccCccc
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred chHHHhhhhhhHHHHHHHHHHHHHhhcccceEEEEeeccCCCceEEEecCCcchHHHHHHHHHhhccCCcccccccCcce
Q psy4716 159 DEEEKKKREEDKVKFENLCKVMKDILDKKVEKVIVSNRLVDSPCCIVTSQYGWTANMERIMKAQALRDTSTMGYMAAKKH 238 (334)
Q Consensus 159 ~e~~k~~~~~~~~e~~~L~~~~K~~L~~~V~~V~vS~rL~~sPa~lv~~e~g~s~~M~r~mk~q~~~~~~~~~~~~~k~~ 238 (334)
.++++++.+..++++++|++|||++|+++|.+|++|+||++||||||++++|||++|||||++|+++++++++++..+||
T Consensus 264 ~eeek~~~ee~~~~~~~L~~~~K~~L~~kV~~V~vS~RL~~sP~~lv~~e~g~s~~Merimkaq~~~d~~~~~~~~~kk~ 343 (448)
T 3q6m_A 264 DEEEKKKQEEKKTKFENLCKIMKDILEKKVEKVVVSNRLVTSPCCIVTSTYGWTANMERIMKAQALRDNSTMGYMAAKKH 343 (448)
T ss_dssp CHHHHHHHHHHHHHSHHHHHHHHHHTGGGCSEEEECSSCSSSSEEEEECSSSCCHHHHHHCCC--------------CEE
T ss_pred chhhhhhHHHHHHHHHHHHHHHHHHhcCcceEEEecCCCCCCCeEEEeCCcchhHHHHHHHHHhhccccccccccccCce
Confidence 66665555666778999999999999999999999999999999999999999999999999998877666677888999
Q ss_pred EEEcCCChHHHHHHHhhhcccchHHHHHHHHHhhhhhhhhCCCCCCCHHHHHHHHHHHHHhccCCCCccccccCC-CccC
Q psy4716 239 LEINPDHSIVETLRQKADADKNDKAVKDLVNLLFETSLLSSGFTLEEPQVHAARIHRMIKLGLGIEDEDEVATGD-DVKA 317 (334)
Q Consensus 239 LEINp~HplIkkL~~~~~~~~~~~~~~~~a~~Lyd~AlL~~G~~i~d~~~f~~ri~~ll~~~l~~~~~~~~~~~~-~~~~ 317 (334)
|||||+||||++|+++...+.+++.++++|++|||+|+|++|+.++||+.|++||++||.++||++.+++++++. ++.+
T Consensus 344 LEINp~Hpli~~L~~~~~~d~~~~~~~~~~~lLyd~AlL~~G~~l~DP~~f~~ri~~ll~~~L~id~~~~~~~~~~~~~~ 423 (448)
T 3q6m_A 344 LEINPDHSIIETLRQKAEADKNDKSVKDLVILLYETALLSSGFSLEDPQTHANRIYRMIKLGLGIDEDDPTADDTSAAVT 423 (448)
T ss_dssp EEECTTCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHTTC----------------
T ss_pred eEECCCCHHHHHHHHHhhcccchhHHHHHHHHHHHhHHhcCCCCCCCHHHHHHHHHHHHHHhcCCCcccccccccccccc
Confidence 999999999999999877777778999999999999999999999999999999999999999999876555432 3344
Q ss_pred CCCCCCCCC
Q psy4716 318 GDIPVAEGE 326 (334)
Q Consensus 318 ~~~~~~~~~ 326 (334)
+++|++++.
T Consensus 424 ~~~~~~~~~ 432 (448)
T 3q6m_A 424 EEMPPLEGD 432 (448)
T ss_dssp ---------
T ss_pred CCCCCCCCC
Confidence 566777654
No 4
>2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A {Escherichia coli} PDB: 2iop_A
Probab=100.00 E-value=4.9e-67 Score=541.27 Aligned_cols=210 Identities=29% Similarity=0.521 Sum_probs=172.7
Q ss_pred CCChhHHHHhccccCceEEEEeCCCHHHHhcChhHHHHHhCCcEEEeecCchhHHHHHhhhhcCCCceeeccccCCCCCC
Q psy4716 79 KLEDEDYVARMKENQKQIYYITGETKDQVANSSFVERVKKRGFEVIYMTEPIDEYVVQQLKDYDGKTLVSVTKEGLELPE 158 (334)
Q Consensus 79 ~~tl~eYv~rmke~Qk~IYY~tg~s~~~~~~SP~lE~~k~kg~EVL~l~dpiDe~~i~~l~~y~gkkf~sV~~~~~~l~~ 158 (334)
.+||+||++|||++|+.|||++|+|++++++|||+|.|++||||||||++|||+||+++|.+|+|++|++|+++++++++
T Consensus 413 ~~sL~eY~~rmke~q~~IyY~t~~~~~~~~~sp~~e~~~~kg~eVl~~~~~iDe~~~~~l~~~~~k~~~~v~~~~~~~~~ 492 (624)
T 2ioq_A 413 TVSLEDYVSRMKEGQEKIYYITADSYAAAKSSPHLELLRKKGIEVLLLSDRIDEWMMNYLTEFDGKPFQSVSKVDESLEK 492 (624)
T ss_dssp CBCHHHHHTTCCTTCCSEEEEECSSHHHHHHCHHHHHHHHHTCCCEEECSSTHHHHTTTCCEETTEEEEETTSCSTTTTT
T ss_pred eeeHHHHHHhccccCceEEEEeCCCHHHHhhChHHHHHHhCCceEEEecCchHHHHHHHHHhcCCceEEEeecccccccc
Confidence 58899999999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred c-hHHHhhhhhhHHHHHHHHHHHHHhhcccceEEEEeeccCCCceEEEecCCcchHHHHHHHHHhhccCCcccccccCcc
Q psy4716 159 D-EEEKKKREEDKVKFENLCKVMKDILDKKVEKVIVSNRLVDSPCCIVTSQYGWTANMERIMKAQALRDTSTMGYMAAKK 237 (334)
Q Consensus 159 ~-e~~k~~~~~~~~e~~~L~~~~K~~L~~~V~~V~vS~rL~~sPa~lv~~e~g~s~~M~r~mk~q~~~~~~~~~~~~~k~ 237 (334)
. +++++..+..++++++|++|||++|+++|.+|++|.||++||||||++++|||++|+|||++|++ +++..++
T Consensus 493 ~~~~~~~~~~~~~~~~~~l~~~~k~~L~~~v~~V~~s~rl~~sP~~lv~~~~~~~~~m~r~m~~~~~------~~~~~~~ 566 (624)
T 2ioq_A 493 LADEVDESAKEAEKALTPFIDRVKALLGERVKDVRLTHRLTDTPAIVSTDADEMSTQMAKLFAAAGQ------KVPEVKY 566 (624)
T ss_dssp CC-------HHHHHHHHHHHHHHHHHSSSSSSEEEECCCCSSCCEEEECCC---------------------------CC
T ss_pred cchhhhhhhhHhHHHHHHHHHHHHHhhcCCceEEEEeecCCCCcEEEEecCcCcCHHHHHHHHHhhh------cccccCc
Confidence 3 33333334567789999999999999999999999999999999999999999999999999762 2445689
Q ss_pred eEEEcCCChHHHHHHHhhhcccchHHHHHHHHHhhhhhhhhCCCCCCCHHHHHHHHHHHHH
Q psy4716 238 HLEINPDHSIVETLRQKADADKNDKAVKDLVNLLFETSLLSSGFTLEEPQVHAARIHRMIK 298 (334)
Q Consensus 238 ~LEINp~HplIkkL~~~~~~~~~~~~~~~~a~~Lyd~AlL~~G~~i~d~~~f~~ri~~ll~ 298 (334)
+|||||+||||++|.. ..+++.++++|++|||+|||++|++++||+.|++|+++||.
T Consensus 567 ~LeiN~~hpli~~L~~----~~~~~~~~~~~~~L~d~All~~g~~l~dp~~f~~r~~~~l~ 623 (624)
T 2ioq_A 567 IFELNPDHVLVKRAAD----TEDEAKFSEWVELLLDQALLAERGTLEDPNLFIRRMNQLLV 623 (624)
T ss_dssp EEEECTTCHHHHTTTS----CCCHHHHHHHHHHHHHHHHHHHHSCCSSHHHHHHHHHHHHH
T ss_pred eEEECCCCHHHHHHHh----hcCHHHHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHHhh
Confidence 9999999999999965 23567799999999999999999999999999999999996
No 5
>3hjc_A Heat shock protein 83-1; sleeping sickness, structura genomics, stress response protein, chaperone, structural GE consortium, SGC; 2.50A {Leishmania major}
Probab=100.00 E-value=9.5e-65 Score=504.24 Aligned_cols=228 Identities=57% Similarity=0.958 Sum_probs=204.2
Q ss_pred CCChhHHHHhccccCceEEEEeCCCHHHHhcChhHHHHHhCCcEEEeecCchhHHHHHhhhhcCCCceeeccccCCCCCC
Q psy4716 79 KLEDEDYVARMKENQKQIYYITGETKDQVANSSFVERVKKRGFEVIYMTEPIDEYVVQQLKDYDGKTLVSVTKEGLELPE 158 (334)
Q Consensus 79 ~~tl~eYv~rmke~Qk~IYY~tg~s~~~~~~SP~lE~~k~kg~EVL~l~dpiDe~~i~~l~~y~gkkf~sV~~~~~~l~~ 158 (334)
.+||++|++|||++|+.|||++|+|++++++|||+|.|++||||||||++|||+||+++|.+|+|++|+||+++++++++
T Consensus 200 ~~SL~eYv~rmke~Qk~IYYitg~s~~~~~~sp~lE~~k~kG~EVL~l~d~iDe~~i~~L~e~~gk~f~sV~k~~l~l~~ 279 (444)
T 3hjc_A 200 MTTLKDYVTRMKAGQKSIYYITGDSKKKLETSPFIEQARRRGLEVLFMTEPIDEYVMQQVKDFEDKKFACLTKEGVHFEE 279 (444)
T ss_dssp CBCHHHHHHTCCTTCCEEEEEECSCHHHHHTCGGGHHHHHHTCCEEEECSHHHHHHHHHCCEETTEEEEETTBSSCCCCC
T ss_pred cCcHHHHHHhccccCceEEEEeCCCHHHHHhChHHHHHHhCCcEEEEeCCchHHHHHHHHHHhCCceEEEeccccccchh
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred chHHHhhhhhhHHHHHHHHHHHHHhhcccceEEEEeeccCCCceEEEecCCcchHHHHHHHHHhhccCCcccccccCcce
Q psy4716 159 DEEEKKKREEDKVKFENLCKVMKDILDKKVEKVIVSNRLVDSPCCIVTSQYGWTANMERIMKAQALRDTSTMGYMAAKKH 238 (334)
Q Consensus 159 ~e~~k~~~~~~~~e~~~L~~~~K~~L~~~V~~V~vS~rL~~sPa~lv~~e~g~s~~M~r~mk~q~~~~~~~~~~~~~k~~ 238 (334)
.+++++..+..++++++|++|||++|+++|.+|++|.||++||||||++++|||++|||||++|++.+++++++|..+++
T Consensus 280 ~eeek~~~ee~~~~~~~L~~~~K~~L~~kV~~V~vS~RL~~sP~~lv~~e~g~s~~Merimka~~~~~~~~~~~~~~k~~ 359 (444)
T 3hjc_A 280 SEEEKQQREEEKAACEKLCKTMKEVLGDKVEKVIVSERLSTSPCILVTSEFGWSAHMEQIMRNQALRDSSMAQYMMSKKT 359 (444)
T ss_dssp CHHHHHHHHHHHHHTHHHHHHHHHHHGGGCSEEEECSSCSSSSEEEEBCSSSBCHHHHHHHHHC--------CTTBCCCE
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHhcCcceEEEecCCCCCCCeEEEcCCccccHHHHHHHHHhcccccccccccccCee
Confidence 66555555666778999999999999999999999999999999999999999999999999998765554567788999
Q ss_pred EEEcCCChHHHHHHHhhhcccchHHHHHHHHHhhhhhhhhCCCCCCCHHHHHHHHHHHHHhccCCCCc
Q psy4716 239 LEINPDHSIVETLRQKADADKNDKAVKDLVNLLFETSLLSSGFTLEEPQVHAARIHRMIKLGLGIEDE 306 (334)
Q Consensus 239 LEINp~HplIkkL~~~~~~~~~~~~~~~~a~~Lyd~AlL~~G~~i~d~~~f~~ri~~ll~~~l~~~~~ 306 (334)
|||||+||||++|+++...+.+++.++++|++|||+|+|++|+.++||+.|++|+++||.++||++.+
T Consensus 360 LEINp~Hpli~~L~~~~~~d~~~~~~~~l~~lLyd~AlL~~G~~ledp~~f~~ri~~ll~~~l~~~~~ 427 (444)
T 3hjc_A 360 MELNPRHPIIKELRRRVGADENDKAVKDLVFLLFDTSLLTSGFQLEDPTGYAERINRMIKLGLSLDEE 427 (444)
T ss_dssp EEECTTSHHHHHHHHHHHTC-CCHHHHHHHHHHHHHHHHHHTCCCSCHHHHHHHHHHHHHHHHC----
T ss_pred EEECCCCHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhcCCCcc
Confidence 99999999999999987777778899999999999999999999999999999999999999999876
No 6
>2cge_A ATP-dependent molecular chaperone HSP82; chaperone complex, heat shock protein, CO-chaperone, ATP-binding, heat shock; 3.0A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.2e-61 Score=477.15 Aligned_cols=223 Identities=52% Similarity=0.887 Sum_probs=205.3
Q ss_pred CCChhHHHHhccccCceEEEEeCCCHHHHhcChhHHHHHhCCcEEEeecCchhHHHHHhhhhcCCCceeeccccCCCCCC
Q psy4716 79 KLEDEDYVARMKENQKQIYYITGETKDQVANSSFVERVKKRGFEVIYMTEPIDEYVVQQLKDYDGKTLVSVTKEGLELPE 158 (334)
Q Consensus 79 ~~tl~eYv~rmke~Qk~IYY~tg~s~~~~~~SP~lE~~k~kg~EVL~l~dpiDe~~i~~l~~y~gkkf~sV~~~~~~l~~ 158 (334)
.+||+||++|||++|+.|||++|+|++++++|||+|.|++||||||||++|||+||+++|++|+|++|+||+++ +++++
T Consensus 182 ~~sL~eYv~rmke~Q~~IyY~t~~s~~~~~~sp~~E~~k~kG~EVL~l~d~iDe~~i~~L~e~~gk~~~sV~~~-l~l~~ 260 (405)
T 2cge_A 182 LTSLTDYVTRMPEHQKNIYYITGESLKAVEKSPFLDALKAKNFEVLFLTDPIDEYAFTQLKEFEGKTLVDITKD-FELEE 260 (405)
T ss_dssp CEEHHHHHHTCCTTCCSEEEEECSCHHHHHTCTTHHHHHHHTCCEEEECSHHHHHHHHHHCBSSSBEEESSBCC-CCSSS
T ss_pred eeeHHHHHHhccCCCceEEEEeCCCHHHHhcChHHHHHHhCCCEEEEecCchHHHHHHHHHHhCCceeEEcccc-ccccc
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999 88876
Q ss_pred chHHHhhhhhhHHHHHHHHHHHHHhhcccceEEEEeeccCCCceEEEecCCcchHHHHHHHHHhhccCCcccccccCcce
Q psy4716 159 DEEEKKKREEDKVKFENLCKVMKDILDKKVEKVIVSNRLVDSPCCIVTSQYGWTANMERIMKAQALRDTSTMGYMAAKKH 238 (334)
Q Consensus 159 ~e~~k~~~~~~~~e~~~L~~~~K~~L~~~V~~V~vS~rL~~sPa~lv~~e~g~s~~M~r~mk~q~~~~~~~~~~~~~k~~ 238 (334)
.+++++..+..++++++|++|||++|+++|.+|++|.||++||||||++++|||++|||||++|+++++++++++..+++
T Consensus 261 ~e~~~~~~~~~~~~~~~L~~~~k~~L~~~v~~V~~s~rl~~sP~~lv~~~~~~s~~mer~~k~~~~~~~~~~~~~~~k~~ 340 (405)
T 2cge_A 261 TDEEKAEREKEIKEYEPLTKALKEILGDQVEKVVVSYKLLDAPAAIRTGQFGWSANMERIMKAQALRDSSMSSYMSSKKT 340 (405)
T ss_dssp STHHHHHHHHHHHHHHHHHHHHHHHHTTSCSEEEECSSCCSSSEEEEECSSSCCHHHHHHHHHHHTTSSSCCCCCCCCEE
T ss_pred cchhhhhhhHhHHHHHHHHHHHHHHhcCcceEEEEEeccCCCCeEEEeccccccHHHHHHHHHhhccccccccccccCee
Confidence 55454444556788999999999999999999999999999999999999999999999999998776655566778999
Q ss_pred EEEcCCChHHHHHHHhhhcc-cchHHHHHHHHHhhhhhhhhCCCCCCCHHHHHHHHHHHHHhccC
Q psy4716 239 LEINPDHSIVETLRQKADAD-KNDKAVKDLVNLLFETSLLSSGFTLEEPQVHAARIHRMIKLGLG 302 (334)
Q Consensus 239 LEINp~HplIkkL~~~~~~~-~~~~~~~~~a~~Lyd~AlL~~G~~i~d~~~f~~ri~~ll~~~l~ 302 (334)
|||||+||||++|+++...+ .+++.++++|++|||+|+|++|+.++||+.|++|+++||.++||
T Consensus 341 LeiNp~Hpli~~L~~~~~~~~~~~~~~~~~~~~Lyd~AlL~~G~~~~dp~~f~~r~~~ll~~~l~ 405 (405)
T 2cge_A 341 FEISPKSPIIKELKKRVDEGGAQDKTVKDLTKLLYETALLTSGFSLDEPTSFASRINRLISLGLN 405 (405)
T ss_dssp EEECTTSHHHHHHHHHHTTTGGGCHHHHHHHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHC
T ss_pred EEEcCCCHHHHHHHHhhhccccCHHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhcC
Confidence 99999999999998865444 45678999999999999999999999999999999999998875
No 7
>1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET: ADP; 2.90A {Escherichia coli} PDB: 1y4u_A
Probab=100.00 E-value=7.2e-51 Score=416.13 Aligned_cols=145 Identities=30% Similarity=0.541 Sum_probs=69.8
Q ss_pred CCChhHHHHhccccCceEEEEeCCCHHHHhcChhHHHHHhCCcEEEeecCchhHHHHHhhhhcCCCceeeccccCCCCCC
Q psy4716 79 KLEDEDYVARMKENQKQIYYITGETKDQVANSSFVERVKKRGFEVIYMTEPIDEYVVQQLKDYDGKTLVSVTKEGLELPE 158 (334)
Q Consensus 79 ~~tl~eYv~rmke~Qk~IYY~tg~s~~~~~~SP~lE~~k~kg~EVL~l~dpiDe~~i~~l~~y~gkkf~sV~~~~~~l~~ 158 (334)
.+||+||++|||++|+.|||++|+|++++++|||+|.|++||||||||++|||+||+++|.+|+|++|++|+++++++++
T Consensus 413 ~~sL~eY~~rmk~~q~~IyY~t~~~~~~~~~sp~~e~~~~kg~eVl~~~~~iDe~~~~~l~~~~~k~~~~v~~~~~~~~~ 492 (559)
T 1y4s_A 413 TVSLEDYVSRMKEGQEKIYYITADSYAAAKSSPHLELLRKKGIEVLLLSDRIDEWMMNYLTEFDGKPFQSVSKVDESLEK 492 (559)
T ss_dssp CEETTSSSTTCCTTCSCCBEECCSSSHHHHTCSSSHHHHHTTCCCEECCSTTHHHHHHHCCCCSSSCCBCC---------
T ss_pred eeeHHHHHHhccccCceEEEEeCCCHHHHhhChHHHHHHhCCceEEEecChHHHHHHHHHHHhCCceEEecccccccccc
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred c-hHHHhhhhhhHHHHHHHHHHHHHhhcccceEEEEeeccCCCceEEEecCCcchHHHHHHHHHhh
Q psy4716 159 D-EEEKKKREEDKVKFENLCKVMKDILDKKVEKVIVSNRLVDSPCCIVTSQYGWTANMERIMKAQA 223 (334)
Q Consensus 159 ~-e~~k~~~~~~~~e~~~L~~~~K~~L~~~V~~V~vS~rL~~sPa~lv~~e~g~s~~M~r~mk~q~ 223 (334)
. +++++..+..++++++|++|||++|+++|.+|++|+||++||||||++++|||++|+|||++|+
T Consensus 493 ~~~~~~~~~~~~~~~~~~l~~~~k~~L~~~v~~V~~s~rl~~sp~~~v~~~~~~~~~m~~~~~~~~ 558 (559)
T 1y4s_A 493 LADEVDESAKEAEKALTPFIDRVKALLGERVKDVRLTHRLTDTPAIVSTDADEMSTQMAKLFAAAG 558 (559)
T ss_dssp ------------------------------------------------------------------
T ss_pred cchhhhhhhhHHHHHHHHHHHHHHHHhcCCceEEEEeccCCCCCEEEEeCCCCcCHHHHHHHHhcC
Confidence 3 3333344456778999999999999999999999999999999999999999999999999874
No 8
>1sf8_A Chaperone protein HTPG; four helix bundle dimerization interface, exposed amphipathic helix, three stranded beta sheet; 2.60A {Escherichia coli} SCOP: d.271.1.1
Probab=100.00 E-value=6.9e-37 Score=257.56 Aligned_cols=114 Identities=25% Similarity=0.462 Sum_probs=104.9
Q ss_pred HHHHHHHHhhcccceEEEEeeccCCCceEEEecCCcchHHHHHHHHHhhccCCcccccccCcceEEEcCCChHHHHHHHh
Q psy4716 175 NLCKVMKDILDKKVEKVIVSNRLVDSPCCIVTSQYGWTANMERIMKAQALRDTSTMGYMAAKKHLEINPDHSIVETLRQK 254 (334)
Q Consensus 175 ~L~~~~K~~L~~~V~~V~vS~rL~~sPa~lv~~e~g~s~~M~r~mk~q~~~~~~~~~~~~~k~~LEINp~HplIkkL~~~ 254 (334)
.+++|||++|+++|.+|++|+||++||||||++++|||++|||||++|++ +++..+|||||||+||||++|++.
T Consensus 12 ~~~~~~K~~L~dkV~~V~vS~RL~~sPa~lv~~e~g~s~~Merimka~~~------~~~~~k~~LEINp~HplIk~L~~~ 85 (126)
T 1sf8_A 12 SFIDRVKALLGERVKDVRLTHRLTDTPAIVSTDADEMSTQMAKLFAAAGQ------KVPEVKYIFELNPDHVLVKRAADT 85 (126)
T ss_dssp CHHHHHHHHHGGGSSEEEECCCCSSCCEEEECCTTSCCHHHHHHHHTTTS------CCCCCCCEEEECTTSHHHHHHHHC
T ss_pred HHHHHHHHHhcCcccEEEEeecccCCCEEEEecCcccCHHHHHHHHHhcc------ccccCCeeeeECCCCHHHHHHHHh
Confidence 48999999999999999999999999999999999999999999999853 234578999999999999999862
Q ss_pred hhcccchHHHHHHHHHhhhhhhhhCCCCCCCHHHHHHHHHHHHH
Q psy4716 255 ADADKNDKAVKDLVNLLFETSLLSSGFTLEEPQVHAARIHRMIK 298 (334)
Q Consensus 255 ~~~~~~~~~~~~~a~~Lyd~AlL~~G~~i~d~~~f~~ri~~ll~ 298 (334)
.+++.++++|+||||+|+|++|+.++||+.|++|+|+||.
T Consensus 86 ----~~~~~~k~l~~lLyd~AlL~~G~~leDp~~F~~Ri~~ll~ 125 (126)
T 1sf8_A 86 ----EDEAKFSEWVELLLDQALLAERGTLEDPNLFIRRMNQLLV 125 (126)
T ss_dssp ----CSHHHHHHHHHHHHHHHHHHHHSCCSSHHHHHHHHHHHHH
T ss_pred ----cChHHHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHh
Confidence 3567799999999999999999999999999999999995
No 9
>1hk7_A Heat shock protein HSP82; ATPase, chaperone; 2.5A {Saccharomyces cerevisiae} SCOP: d.14.1.8
Probab=99.95 E-value=1.7e-29 Score=238.21 Aligned_cols=108 Identities=48% Similarity=0.827 Sum_probs=73.7
Q ss_pred CCCChhHHHHhccccCceEEEEeCCCHHHHhcChhHHHHHhCCcEEEeecCchhHHHHHhhhhcCCCceeeccccCCCCC
Q psy4716 78 PKLEDEDYVARMKENQKQIYYITGETKDQVANSSFVERVKKRGFEVIYMTEPIDEYVVQQLKDYDGKTLVSVTKEGLELP 157 (334)
Q Consensus 78 p~~tl~eYv~rmke~Qk~IYY~tg~s~~~~~~SP~lE~~k~kg~EVL~l~dpiDe~~i~~l~~y~gkkf~sV~~~~~~l~ 157 (334)
..+||++|++||+++|+.|||++|+|++++++|||+|.|++||||||||++||||||+++|++|+|++|+||+++ ++++
T Consensus 181 ~~~SL~eYv~rmke~Qk~IYYitg~s~~~~~~sp~lE~~k~kg~EVL~l~d~iDe~~i~~L~e~~gk~~~sv~k~-~~l~ 259 (288)
T 1hk7_A 181 ELTSLTDYVTRMPEHQKNIYYITGESLKAVEKSPFLDALKAKNFEVLFLTDPIDEYAFTQLKEFEGKTLVDITKD-FELE 259 (288)
T ss_dssp SCBCHHHHHHHSCTTCCEEEEEECSSHHHHHTCGGGHHHHTTTCCCEEECSHHHHHHHHHHCEETTEEEEETTTC-----
T ss_pred CcccHHHHHhhCcCCCceEEEEeCCCHHHHhcCHHHHHHHHCCCEEEEecCchHHHHHhhhhhcCCceeeecccc-cccc
Confidence 369999999999999999999999999999999999999999999999999999999999999999999999998 8887
Q ss_pred CchHHHhhhhhhHHHHHHHHHHHHHhhcc
Q psy4716 158 EDEEEKKKREEDKVKFENLCKVMKDILDK 186 (334)
Q Consensus 158 ~~e~~k~~~~~~~~e~~~L~~~~K~~L~~ 186 (334)
+.+++++..+..++++++||+|||++|++
T Consensus 260 ~~~eek~~~e~~~~~~~~L~~~~K~~L~~ 288 (288)
T 1hk7_A 260 ETDEEKAEREKEIKEYEPLTKALKEILGD 288 (288)
T ss_dssp -----------------------------
T ss_pred chhhhhhhhHHHHHHHHHHHHHHHHHhCC
Confidence 55444444455677899999999999974
No 10
>2gq0_A Chaperone protein HTPG; molecular chaperone, HSP90, E. coli, hydrolase; 1.90A {Escherichia coli}
Probab=99.95 E-value=2.5e-29 Score=238.55 Aligned_cols=110 Identities=32% Similarity=0.502 Sum_probs=72.9
Q ss_pred CCCChhHHHHhccccCceEEEEeCCCHHHHhcChhHHHHHhCCcEEEeecCchhHHHHHhhhhcCCCceeeccccCCCCC
Q psy4716 78 PKLEDEDYVARMKENQKQIYYITGETKDQVANSSFVERVKKRGFEVIYMTEPIDEYVVQQLKDYDGKTLVSVTKEGLELP 157 (334)
Q Consensus 78 p~~tl~eYv~rmke~Qk~IYY~tg~s~~~~~~SP~lE~~k~kg~EVL~l~dpiDe~~i~~l~~y~gkkf~sV~~~~~~l~ 157 (334)
..+||+||++|||++|+.|||++|+|++++++|||+|.|++||||||||++||||||+++|++|+|++|+||++++++++
T Consensus 184 ~~~SL~eYv~rmke~Qk~IYYitg~s~~~~~~sp~lE~~k~kG~EVL~l~d~iDe~~i~~L~e~~gk~f~sV~k~~l~l~ 263 (303)
T 2gq0_A 184 QTVSLEDYVSRMKEGQEKIYYITADSYAAAKSSPHLELLRKKGIEVLLLSDRIDEWMMNYLTEFDGKPFQSVSKVDESLE 263 (303)
T ss_dssp CCBCHHHHHHTCCTTCCSEEEEECSSHHHHHTCGGGHHHHHHTCCEEEECSTTHHHHTTTCCEETTEEEEETTC------
T ss_pred CeeeHHHHHHhcccCCceEEEEeCCCHHHHhcChHHHHHHHCCCeEEEeCchhHHHHHHHHHhcCCcceEEeeccccCcc
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999999886
Q ss_pred CchHHHhhhhhhHHHHHHHHHHHHHhhcccce--EEEEeeccCCCceEEEec
Q psy4716 158 EDEEEKKKREEDKVKFENLCKVMKDILDKKVE--KVIVSNRLVDSPCCIVTS 207 (334)
Q Consensus 158 ~~e~~k~~~~~~~~e~~~L~~~~K~~L~~~V~--~V~vS~rL~~sPa~lv~~ 207 (334)
+.+ ++.|+++|. +|.+|+||++||||+++.
T Consensus 264 ~~~--------------------~~~l~~~~~~~~~~~~~~~~s~~~~~~~~ 295 (303)
T 2gq0_A 264 KLA--------------------DGDLGTLVPRGSMAISDPNSSSVDKLAAA 295 (303)
T ss_dssp ----------------------------------------------------
T ss_pred ccc--------------------hhhhccccccCCccccCcCCcchHHHHHH
Confidence 321 244677887 899999999999999765
No 11
>3pry_A Heat shock protein HSP 90-beta; structural genomics, structural genomics consortium, SGC, HE protein, chaperone; 2.28A {Homo sapiens} SCOP: d.14.1.8
Probab=99.91 E-value=7.3e-25 Score=204.93 Aligned_cols=80 Identities=76% Similarity=1.152 Sum_probs=78.2
Q ss_pred CCChhHHHHhccccCceEEEEeCCCHHHHhcChhHHHHHhCCcEEEeecCchhHHHHHhhhhcCCCceeeccccCCCCCC
Q psy4716 79 KLEDEDYVARMKENQKQIYYITGETKDQVANSSFVERVKKRGFEVIYMTEPIDEYVVQQLKDYDGKTLVSVTKEGLELPE 158 (334)
Q Consensus 79 ~~tl~eYv~rmke~Qk~IYY~tg~s~~~~~~SP~lE~~k~kg~EVL~l~dpiDe~~i~~l~~y~gkkf~sV~~~~~~l~~ 158 (334)
.+||+||++|||++|+.|||++|+|++++++|||+|.|++||||||||++||||||+|+|.+|+|++|+||+++++++++
T Consensus 184 ~~SL~eYv~rmke~Q~~IyYitg~s~~~~~~sp~~E~~k~kg~EVL~l~d~iDe~~i~~L~ef~gk~l~sv~k~~l~l~e 263 (268)
T 3pry_A 184 MTSLSEYVSRMKETQKSIYYITGESKEQVANSAFVERVRKRGFEVVYMTEPIDEYCVQQLKEFDGKSLVSVTKEGLELAE 263 (268)
T ss_dssp CEEHHHHHHTSCTTCCEEEEECSCCHHHHHTCHHHHHHHTTTCCEEECCSTTHHHHHHHHCEETTEEEEETTCSSCCCCC
T ss_pred cEeHHHHHHhcccCCceEEEEeCCCHHHHHhChHHHHHHHcCceEEEeCCchHHHHHHHHHhcCCceeeecccccCCCcc
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999874
No 12
>1usu_A Heat shock protein HSP82; chaperone/complex, chaperone, activator, HSP90; 2.15A {Saccharomyces cerevisiae} SCOP: d.14.1.8 PDB: 1usv_A
Probab=99.89 E-value=4.1e-24 Score=199.18 Aligned_cols=74 Identities=51% Similarity=0.904 Sum_probs=72.8
Q ss_pred CCChhHHHHhccccCceEEEEeCCCHHHHhcChhHHHHHhCCcEEEeecCchhHHHHHhhhhcCCCceeecccc
Q psy4716 79 KLEDEDYVARMKENQKQIYYITGETKDQVANSSFVERVKKRGFEVIYMTEPIDEYVVQQLKDYDGKTLVSVTKE 152 (334)
Q Consensus 79 ~~tl~eYv~rmke~Qk~IYY~tg~s~~~~~~SP~lE~~k~kg~EVL~l~dpiDe~~i~~l~~y~gkkf~sV~~~ 152 (334)
.+||+||++|||++|+.|||++|+|++++++|||+|.|++||||||||++||||||+++|++|+|++|+||+++
T Consensus 184 ~~sL~eYv~rmke~Q~~IyY~t~~s~~~~~~sp~lE~~k~kg~EVL~l~d~iDe~~i~~L~e~~gk~~~sv~k~ 257 (260)
T 1usu_A 184 LTSLTDYVTRMPEHQKNIYYITGESLKSVEKSPFLDALKAKNFEVLFLTDPIDEYAFTQLKEFEGKTLVDITKD 257 (260)
T ss_dssp EEEHHHHHHTSCTTCCEEEEEECSSHHHHHTCTTHHHHHHTTCCEEEECSHHHHHHHHHHCEETTEEEEETTCC
T ss_pred eeeHHHHHHhccCCCceEEEEeCCCHHHHhcChHHHHHHhCCCeEEEeCCchHHHHHHHHHhhCCceEEecccc
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999997
No 13
>1y6z_A Heat shock protein, putative; chaperone, structural genomics, structural genom consortium, SGC, unknown function; 1.88A {Plasmodium falciparum}
Probab=99.85 E-value=2.8e-22 Score=187.50 Aligned_cols=76 Identities=38% Similarity=0.709 Sum_probs=72.7
Q ss_pred CCCChhHHHHhccccCceEEEEeCCCHHHHhcChhHHHHHhCCcEEEeecCchhHHHHHhh--hhcCCCceeeccccC
Q psy4716 78 PKLEDEDYVARMKENQKQIYYITGETKDQVANSSFVERVKKRGFEVIYMTEPIDEYVVQQL--KDYDGKTLVSVTKEG 153 (334)
Q Consensus 78 p~~tl~eYv~rmke~Qk~IYY~tg~s~~~~~~SP~lE~~k~kg~EVL~l~dpiDe~~i~~l--~~y~gkkf~sV~~~~ 153 (334)
..+||+||++|||++|+.|||++|+|++++++|||+|.|++||||||+|++||||+|+++| .+|+|++|+||++++
T Consensus 186 ~~~sL~eYv~rmke~Q~~IyY~t~~~~~~~~~sp~~E~~~~kg~EVL~l~~~iDe~~i~~L~~~e~~gk~~~sv~k~~ 263 (263)
T 1y6z_A 186 KKTDLDSYIENMKEDQKCIYYISGENKKTAQNSPSLEKLKALNYDVLFSLEPIDEFCLSSLTVNKYKGYEVLDVNKAD 263 (263)
T ss_dssp SCEEHHHHHHTCCTTCCSEEEEECSSHHHHHTCGGGHHHHHHTCCCEEECSHHHHHHHHHHHHHCBTTBCEEETTCC-
T ss_pred ceeeHHHHHHhccCCCceEEEEeCCCHHHHhcCcHHHHHHhCCCeEEEeCCcHHHHHHHHhhhhccCCceEEecCCCC
Confidence 4699999999999999999999999999999999999999999999999999999999999 599999999999863
No 14
>3ied_A Heat shock protein; HSP90, chaperone, structural genomics, structura genomics consortium, SGC, stress response; HET: AN2; 2.01A {Plasmodium falciparum}
Probab=99.68 E-value=2.5e-17 Score=153.17 Aligned_cols=63 Identities=30% Similarity=0.500 Sum_probs=57.4
Q ss_pred CccceeeeeecCeeEEEeecCCCCceeeeeCCCCceEEeeCC--------CCCCccEEEEeecccccCchHH
Q psy4716 1 MNGFYSAYLVADKVTVTSKHNDDEQYIWESSAGGSFTIKPDN--------SQPLGRLLVEKEREKELSEDEE 64 (334)
Q Consensus 1 gvGfyS~f~Va~~v~v~tr~~~~~~~~w~s~~~g~~~i~~~~--------~~~~Gt~i~l~~~~~~~~~~~~ 64 (334)
|||||||||||++|+|+|| +++.+|+|+|+|+|+|+|++++ ...+||+|+||+++++..+.++
T Consensus 179 GVGFySaFmVAdkV~V~Sk-~dd~~~~WeS~g~gsfti~~~~~~~~~~g~~~~~GT~I~L~Lked~~e~le~ 249 (272)
T 3ied_A 179 GVGFYSSFLVSNRVEVYTK-KEDQIYRWSSDLKGSFSVNEIKKYDQEYDDIKGSGTKIILHLKEECDEYLED 249 (272)
T ss_dssp CCGGGGGGGTEEEEEEEEE-SSSCEEEEEECSSSEEEEEECTTCTTCC--CCSSEEEEEEEECGGGGGGGSH
T ss_pred cceeheeeccCCEEEEEEc-CCCceEEEEECCCCCEEEEECcccccccCCCCCCCcEEEEEECCChHHhcCH
Confidence 8999999999999999999 6788999999999999999886 4689999999999988766654
No 15
>3nmq_A Heat shock protein HSP 90-beta; ATPase, chaperone-chaperone inhibitor complex; HET: 7PP; 2.20A {Homo sapiens} SCOP: d.122.1.1
Probab=99.66 E-value=5.8e-17 Score=149.70 Aligned_cols=64 Identities=55% Similarity=0.810 Sum_probs=57.6
Q ss_pred CccceeeeeecCeeEEEeecCCCCceeeeeCCCCceEEeeCCC--CCCccEEEEeecccccCchHH
Q psy4716 1 MNGFYSAYLVADKVTVTSKHNDDEQYIWESSAGGSFTIKPDNS--QPLGRLLVEKEREKELSEDEE 64 (334)
Q Consensus 1 gvGfyS~f~Va~~v~v~tr~~~~~~~~w~s~~~g~~~i~~~~~--~~~Gt~i~l~~~~~~~~~~~~ 64 (334)
||||||||||||+|+|+||++++.+|+|+|+|+|+|+|++++. ..+||+|+||+++++...-++
T Consensus 134 GvGfySaf~vadkv~V~Sk~~~~~~~~W~s~~~g~fti~~~~~~~~~~GT~I~L~lk~d~~e~l~~ 199 (239)
T 3nmq_A 134 GVGFYSAYLVAEKVVVITKHNDDEQYAWESSAGGSFTVRADHGEPIGRGTKVILHLKEDQTEYLEE 199 (239)
T ss_dssp TCGGGGGGGTEEEEEEEEECTTSCCEEEEECSTTEEEEEECCSSCCSSEEEEEEEECGGGGGGGSH
T ss_pred CcccccccccCCEEEEEEeeCCCceeEEEECCCCcEEEEecCCCcCCCCCEEEEEECCChHHhcCH
Confidence 8999999999999999999988889999999999999999853 479999999999887555543
No 16
>3peh_A Endoplasmin homolog; structural genomics, structural genomics consortium, SGC, HE protein, chaperone, ATP binding; HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A*
Probab=99.64 E-value=1.4e-16 Score=150.08 Aligned_cols=63 Identities=48% Similarity=0.648 Sum_probs=56.7
Q ss_pred CccceeeeeecCeeEEEeecCCCCceeeeeCCCCceEEeeCC---CCCCccEEEEeecccccCchH
Q psy4716 1 MNGFYSAYLVADKVTVTSKHNDDEQYIWESSAGGSFTIKPDN---SQPLGRLLVEKEREKELSEDE 63 (334)
Q Consensus 1 gvGfyS~f~Va~~v~v~tr~~~~~~~~w~s~~~g~~~i~~~~---~~~~Gt~i~l~~~~~~~~~~~ 63 (334)
|||||||||||++|+|+||++++.+|+|+|+|+|+|+|++++ ..++||+|+|++++++..+-+
T Consensus 142 GVGFySaf~vadkV~V~Sk~~~~~~~~Wes~g~g~fti~~~~~~~~~~~GT~I~L~Lked~~e~le 207 (281)
T 3peh_A 142 GVGFYSAFLVADKVIVYTKNNDDEQYIWESTADAKFTIYKDPRGATLKRGTRISLHLKEDATNLLN 207 (281)
T ss_dssp TCGGGGGGGTEEEEEEEEECTTSCCEEEEEETTSCEEEEECTTCSTTSSEEEEEEEECGGGGGGGS
T ss_pred CccchhhccccCEEEEEEecCCCCEEEEEECCCccEEEEEcCCCCCCCCCeEEEEEECCchhhhcC
Confidence 899999999999999999998888999999999999999985 458999999999987654444
No 17
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A* 1u0y_A* 1yt2_A*
Probab=99.48 E-value=2.8e-14 Score=134.06 Aligned_cols=60 Identities=45% Similarity=0.634 Sum_probs=53.5
Q ss_pred CccceeeeeecCeeEEEeecCCCCceeeeeCCCCceEEeeCC---CCCCccEEEEeecccccCc
Q psy4716 1 MNGFYSAYLVADKVTVTSKHNDDEQYIWESSAGGSFTIKPDN---SQPLGRLLVEKEREKELSE 61 (334)
Q Consensus 1 gvGfyS~f~Va~~v~v~tr~~~~~~~~w~s~~~g~~~i~~~~---~~~~Gt~i~l~~~~~~~~~ 61 (334)
|||||||||||++|+|+||++++.+|+|+|+| |+|+|.+.. ..++||+|+|+++++...+
T Consensus 128 GvGfySaf~va~~v~V~Sk~~~~~~~~w~s~g-g~~~i~~~~~~~~~~~GT~I~L~Lk~d~~e~ 190 (269)
T 1qy5_A 128 GVGFYSAFLVADKVIVTSKHNNDTQHIWESDS-NEFSVIADPRGNTLGRGTTITLVLKEEASDY 190 (269)
T ss_dssp TCGGGGGGGTEEEEEEEEECTTSCCEEEEECS-SCEEEEECTTCSCSSSEEEEEEEECGGGGGG
T ss_pred cccHHHHhhccceEEEEEEecCCcEEEEEEeC-CEEEEEeccCCCcCCCCeEEEEEEcccchhh
Confidence 89999999999999999999877899999999 999999875 3589999999998765433
No 18
>3o0i_A HSP90AA1 protein; HSP90 heat-shock proteins, chaperone-inhibitor complex; HET: P54; 1.47A {Homo sapiens} PDB: 2fwz_A* 2fwy_A* 2h55_A*
Probab=99.44 E-value=8.7e-14 Score=129.66 Aligned_cols=63 Identities=56% Similarity=0.817 Sum_probs=55.9
Q ss_pred CccceeeeeecCeeEEEeecCCCCceeeeeCCCCceEEeeCC--CCCCccEEEEeecccccCchH
Q psy4716 1 MNGFYSAYLVADKVTVTSKHNDDEQYIWESSAGGSFTIKPDN--SQPLGRLLVEKEREKELSEDE 63 (334)
Q Consensus 1 gvGfyS~f~Va~~v~v~tr~~~~~~~~w~s~~~g~~~i~~~~--~~~~Gt~i~l~~~~~~~~~~~ 63 (334)
||||||+|||||+|+|+||++++.+|.|+|+|+|+|+|.+++ ..++||+|+|+++...-...|
T Consensus 155 G~Gf~S~f~Vadkv~V~Sr~~~~~g~~w~s~gg~~~~v~~~~~~~~~~GT~I~l~LK~~~~e~~e 219 (256)
T 3o0i_A 155 GVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSFTVRTDTGEPMGRGTKVILHLKEDQTEYLE 219 (256)
T ss_dssp TCGGGGGGGTEEEEEEEEECTTSCEEEEEECSTTEEEEEECCSSCCSSEEEEEEEECGGGGGGGC
T ss_pred cchHHHhhccCCeEEEEEcCCCCceEEEEEeccceEEEeeCCCCCCCCCcEEEEEEcCcchhhcc
Confidence 899999999999999999998888999999999999999975 348999999999876644433
No 19
>3t0h_A Heat shock protein HSP 90-alpha; chaperone, ATPase; 1.20A {Homo sapiens} SCOP: d.122.1.1 PDB: 3r4m_A 3t0z_A* 3t10_A* 3t1k_A* 3t2s_A* 1uyl_A 1uy7_A* 1uy8_A* 1uy9_A* 1uyc_A* 1uyd_A* 1uye_A* 1uyf_A* 1uyg_A* 1uyh_A* 1uyk_A* 1uy6_A 2cdd_A* 2uwd_A* 2vci_A* ...
Probab=99.41 E-value=2.2e-13 Score=125.12 Aligned_cols=61 Identities=56% Similarity=0.846 Sum_probs=55.0
Q ss_pred CccceeeeeecCeeEEEeecCCCCceeeeeCCCCceEEeeCC--CCCCccEEEEeecccccCc
Q psy4716 1 MNGFYSAYLVADKVTVTSKHNDDEQYIWESSAGGSFTIKPDN--SQPLGRLLVEKEREKELSE 61 (334)
Q Consensus 1 gvGfyS~f~Va~~v~v~tr~~~~~~~~w~s~~~g~~~i~~~~--~~~~Gt~i~l~~~~~~~~~ 61 (334)
|+||||+||||++|+|+||++++.+|+|+++|+|.|+|.+++ ..++||+|+|+++++.-..
T Consensus 127 G~G~~S~~~vad~v~V~Sr~~~~~~~~w~~~g~~~~~v~~~~~~~~~~GT~I~v~Lk~~~~E~ 189 (228)
T 3t0h_A 127 GVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSFTVRTDTGEPMGRGTKVILHLKEDQTEY 189 (228)
T ss_dssp TCGGGGGGGTEEEEEEEEECTTSCEEEEEECSTTEEEEEECCSSCCSSEEEEEEEECGGGGGG
T ss_pred ChhHHHHhccCCEEEEEEecCCCCcEEEEEcCCceEEEeecCCCCCCCCcEEEEEECCchhhh
Confidence 899999999999999999998778999999999999999975 4589999999999876443
No 20
>2gqp_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, ligand, NECA, NPCA, adenosine; HET: PA7 PG4 1PE; 1.50A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1tc0_A* 1tbw_A* 1u0z_A* 1u2o_A* 1ysz_A* 1yt0_A* 1yt1_A* 2exl_A* 2fyp_A* 2gfd_A* 1tc6_A* 2h8m_A* 2hch_A* 2hg1_A* 3o2f_A* 2esa_A*
Probab=99.34 E-value=1.1e-12 Score=120.82 Aligned_cols=57 Identities=47% Similarity=0.692 Sum_probs=51.9
Q ss_pred CccceeeeeecCeeEEEeecCCCCceeeeeCCCCceEEeeCC---CCCCccEEEEeecccc
Q psy4716 1 MNGFYSAYLVADKVTVTSKHNDDEQYIWESSAGGSFTIKPDN---SQPLGRLLVEKEREKE 58 (334)
Q Consensus 1 gvGfyS~f~Va~~v~v~tr~~~~~~~~w~s~~~g~~~i~~~~---~~~~Gt~i~l~~~~~~ 58 (334)
||||||+||||++|+|+||++++.+|.|+++| |+|+|.+.. ..++||+|+|+++++.
T Consensus 132 GiG~~S~f~va~~v~V~Sr~~~~~~~~w~~~g-g~~~i~~~~~~~~~~~GT~I~l~Lk~~~ 191 (236)
T 2gqp_A 132 GVGFYSAFLVADKVIVTSKHNNDTQHIWESDS-NEFSVIADPRGNTLGRGTTITLVLKEEA 191 (236)
T ss_dssp TCGGGGGGGTEEEEEEEEECTTSCCEEEEESS-SCEEEEECTTCSCSSSEEEEEEEECGGG
T ss_pred CcchhhHhhcCCEEEEEEeCCCCceEEEEEeC-CEEEEEeccCCCCCCCCeEEEEEECCcc
Confidence 89999999999999999999877899999999 999999875 3579999999998754
No 21
>2wer_A ATP-dependent molecular chaperone HSP82; ATPase, ATP-binding, phosphoprotein, stress respo nucleotide-binding; HET: RDC; 1.60A {Saccharomyces cerevisiae} PDB: 2weq_A* 2wep_A* 1zwh_A* 1zw9_A* 2fxs_A* 3c11_A* 3c0e_A* 2yge_A* 2ygf_A* 2akp_A
Probab=99.25 E-value=6.1e-12 Score=114.45 Aligned_cols=58 Identities=53% Similarity=0.807 Sum_probs=52.8
Q ss_pred CccceeeeeecCeeEEEeecCCCCceeeeeCCCCceEEeeCC---CCCCccEEEEeecccc
Q psy4716 1 MNGFYSAYLVADKVTVTSKHNDDEQYIWESSAGGSFTIKPDN---SQPLGRLLVEKEREKE 58 (334)
Q Consensus 1 gvGfyS~f~Va~~v~v~tr~~~~~~~~w~s~~~g~~~i~~~~---~~~~Gt~i~l~~~~~~ 58 (334)
|||||||||||++|+|+||+.++.+|.|+++++|.|++.+.. ..++||+|+|++++..
T Consensus 121 GiG~~s~~~~~~~v~v~S~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~GT~I~l~Lk~~~ 181 (220)
T 2wer_A 121 GVGFYSLFLVADRVQVISKSNDDEQYIWESNAGGSFTVTLDEVNERIGRGTILRLFLKDDQ 181 (220)
T ss_dssp TCGGGGGGGTEEEEEEEEECTTSCCEEEEECSSSEEEEEECSSSCCCSSEEEEEEEECTTC
T ss_pred chhHHHhhhcCCeeEEEEecCCCceeEEEeCCCCceEeecccCCCCCCCCeEEEEEECcch
Confidence 899999999999999999998777999999999999999875 4589999999998754
No 22
>1yc1_A HSP 86, heat shock protein HSP 90-alpha; cell-cycle, cancer, drug design, cell cycle; HET: 4BC; 1.70A {Homo sapiens} SCOP: d.122.1.1 PDB: 1yc3_A* 1yc4_A*
Probab=99.24 E-value=6.3e-12 Score=117.70 Aligned_cols=58 Identities=59% Similarity=0.911 Sum_probs=52.6
Q ss_pred CccceeeeeecCeeEEEeecCCCCceeeeeCCCCceEEeeCC--CCCCccEEEEeecccc
Q psy4716 1 MNGFYSAYLVADKVTVTSKHNDDEQYIWESSAGGSFTIKPDN--SQPLGRLLVEKEREKE 58 (334)
Q Consensus 1 gvGfyS~f~Va~~v~v~tr~~~~~~~~w~s~~~g~~~i~~~~--~~~~Gt~i~l~~~~~~ 58 (334)
|||||||||||++|+|+||++++.+|.|+++|+|.|+|.+++ ..++||+|+|+++++.
T Consensus 163 GiGf~S~f~va~~v~V~Sr~~~~~~~~w~~~~~~~~~i~~~~~~~~~~GT~I~l~Lk~~~ 222 (264)
T 1yc1_A 163 GVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSFTVRTDTGEPMGRGTKVILHLKEDQ 222 (264)
T ss_dssp TCGGGGHHHHEEEEEEEEECTTSCCEEEEECSTTEEEEEECCSSCCSSEEEEEEEECGGG
T ss_pred CCCccccccCCCEEEEEEecCCCceEEEEEcCCceEEEeecCCCCCCCCeEEEEEECCch
Confidence 899999999999999999998778999999999999999874 3579999999998754
No 23
>2ior_A Chaperone protein HTPG; heat shock protein, HSP90; HET: ADP; 1.65A {Escherichia coli}
Probab=99.07 E-value=1.2e-10 Score=107.16 Aligned_cols=58 Identities=36% Similarity=0.585 Sum_probs=52.6
Q ss_pred CccceeeeeecCeeEEEeecCC---CCceeeeeCCCCceEEeeCCCCCCccEEEEeecccc
Q psy4716 1 MNGFYSAYLVADKVTVTSKHND---DEQYIWESSAGGSFTIKPDNSQPLGRLLVEKEREKE 58 (334)
Q Consensus 1 gvGfyS~f~Va~~v~v~tr~~~---~~~~~w~s~~~g~~~i~~~~~~~~Gt~i~l~~~~~~ 58 (334)
||||||||++|++|+|+||+.+ ..+|.|.++++|.|+|.+....++||+|++++++..
T Consensus 144 GiG~~S~~~~~~~v~V~Sr~~~~~~~~~~~w~~~~~~~~~i~~~~~~~~GT~V~v~Lk~~~ 204 (235)
T 2ior_A 144 GVGFYSAFIVADKVTVRTRAAGEKPENGVFWESAGEGEYTVADITKEDRGTEITLHLREGE 204 (235)
T ss_dssp CCCGGGGGGTEEEEEEEEECTTSCGGGEEEEEECSSSEEEEEEECCCSCEEEEEEEECTTC
T ss_pred ChhHHHHHhCcCeEEEEEecCCCCCceeEEEEecCCCcEEEeeCCCCCCCEEEEEEEcCch
Confidence 8999999999999999999974 569999999999999998767789999999998654
No 24
>1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A*
Probab=97.40 E-value=0.0001 Score=71.62 Aligned_cols=52 Identities=15% Similarity=0.151 Sum_probs=43.7
Q ss_pred CccceeeeeecCeeEEEeecCC-CCceeeeeCCCCceEEeeCCCCCCccEEEEe
Q psy4716 1 MNGFYSAYLVADKVTVTSKHND-DEQYIWESSAGGSFTIKPDNSQPLGRLLVEK 53 (334)
Q Consensus 1 gvGfyS~f~Va~~v~v~tr~~~-~~~~~w~s~~~g~~~i~~~~~~~~Gt~i~l~ 53 (334)
|+||+|.++|| +|+|+||+.+ ..+|.|..+++|.+........++||+|+++
T Consensus 108 G~gl~si~~vs-~v~v~t~~~~~~~~~~~~~~~~G~~~~~~~~~~~~GT~V~v~ 160 (365)
T 1h7s_A 108 GEALSSLCALS-DVTISTCHASAKVGTRLMFDHNGKIIQKTPYPRPRGTTVSVQ 160 (365)
T ss_dssp SSHHHHHHHHS-EEEEEEECTTCSSCEEEEECTTSCEEEEEECCCCSEEEEEEE
T ss_pred Cchhhhhhhhc-cEEEEEccCCCcceEEEEEcCCCceEeecccCCCCCcEEEEe
Confidence 89999999999 9999999964 5599999998888765433345799999997
No 25
>3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae}
Probab=97.26 E-value=0.00014 Score=70.77 Aligned_cols=52 Identities=19% Similarity=0.148 Sum_probs=43.5
Q ss_pred CccceeeeeecCeeEEEeecCCCCceeeeeCCCCceEEeeCCCCCCccEEEEe
Q psy4716 1 MNGFYSAYLVADKVTVTSKHNDDEQYIWESSAGGSFTIKPDNSQPLGRLLVEK 53 (334)
Q Consensus 1 gvGfyS~f~Va~~v~v~tr~~~~~~~~w~s~~~g~~~i~~~~~~~~Gt~i~l~ 53 (334)
|+||+|.+.|| +|+|+||+.++.+|.|+.+++|.+........++||+|+++
T Consensus 99 GeaL~Si~avS-~l~V~sr~~~~~~~~~~~~~~G~~~~~~~~~~~~GTtV~v~ 150 (367)
T 3h4l_A 99 GEALSSLCGIA-KLSVITTTSPPKADKLEYDMVGHITSKTTTSRNKGTTVLVS 150 (367)
T ss_dssp THHHHHHHHSS-EEEEEEESSTTCEEEEEECTTCCEEEEEEECCSSEEEEEEE
T ss_pred chHHHHhhccC-EEEEEEEECCCCEEEEEEcCCCcEEeeccccCCCCeEEEEc
Confidence 88999999999 79999998667899999998888765432345899999995
No 26
>1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A*
Probab=97.06 E-value=0.00034 Score=67.01 Aligned_cols=51 Identities=24% Similarity=0.326 Sum_probs=42.7
Q ss_pred CccceeeeeecCeeEEEeecCC-CCceeeeeCCCC-ceEEeeCCCCCCccEEEEe
Q psy4716 1 MNGFYSAYLVADKVTVTSKHND-DEQYIWESSAGG-SFTIKPDNSQPLGRLLVEK 53 (334)
Q Consensus 1 gvGfyS~f~Va~~v~v~tr~~~-~~~~~w~s~~~g-~~~i~~~~~~~~Gt~i~l~ 53 (334)
|+||+|+++|| +|+|+||+.+ ..+|.|.++|+. .+++.++. .++||+|+++
T Consensus 98 G~gl~si~~vs-~l~v~s~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~GT~V~v~ 150 (333)
T 1b63_A 98 GEALASISSVS-RLTLTSRTAEQQEAWQAYAEGRDMNVTVKPAA-HPVGTTLEVL 150 (333)
T ss_dssp SCHHHHHHTTS-EEEEEEECTTCSSEEEEEEETTTTEEEEEEEC-CCSEEEEEEE
T ss_pred ccchhhhhcCC-cEEEEEecCCCceEEEEEEcCCcceEeeeccc-CCCCCEEEEe
Confidence 89999999999 8999999965 468999888876 66666653 4799999997
No 27
>3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens}
Probab=95.53 E-value=0.0051 Score=59.43 Aligned_cols=50 Identities=26% Similarity=0.226 Sum_probs=40.3
Q ss_pred CccceeeeeecCeeEEEeecC-CCCceeeeeCCCCce--EEeeCCCCCCccEEEEe
Q psy4716 1 MNGFYSAYLVADKVTVTSKHN-DDEQYIWESSAGGSF--TIKPDNSQPLGRLLVEK 53 (334)
Q Consensus 1 gvGfyS~f~Va~~v~v~tr~~-~~~~~~w~s~~~g~~--~i~~~~~~~~Gt~i~l~ 53 (334)
|+|++|...|| +|+|+||.. ...+|.|...+ |.. .+.++. .++||+|+++
T Consensus 102 GeaL~Si~avs-~l~v~sr~~~~~~~~~~~~~~-G~~~~~~~~~~-~~~GTtV~v~ 154 (348)
T 3na3_A 102 GEALASISHVA-HVTITTKTADGKCAYRASYSD-GKLKAPPKPCA-GNQGTQITVE 154 (348)
T ss_dssp TCHHHHHHHSS-EEEEEEECTTCSSEEEEEEET-TEESSCCEEEC-CCSEEEEEEE
T ss_pred ChHHHHhhccc-EEEEEEEECCCCceEEEEEeC-CEEeeeeeEec-CCCCcEEEEC
Confidence 89999999999 899999996 45799999876 443 245553 5799999995
No 28
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A*
Probab=80.66 E-value=0.64 Score=46.37 Aligned_cols=56 Identities=9% Similarity=0.018 Sum_probs=40.7
Q ss_pred CccceeeeeecCe-----eEEEeecCCCC-ceeee------eCCCCceEEeeCC--CCCCccEEEEeecc
Q psy4716 1 MNGFYSAYLVADK-----VTVTSKHNDDE-QYIWE------SSAGGSFTIKPDN--SQPLGRLLVEKERE 56 (334)
Q Consensus 1 gvGfyS~f~Va~~-----v~v~tr~~~~~-~~~w~------s~~~g~~~i~~~~--~~~~Gt~i~l~~~~ 56 (334)
|+|+++|..+++. ++|.|+..... ++.|. +.++..++..+.. ...+||+|.+++..
T Consensus 110 GLGL~iv~~l~~~~gG~~i~v~S~~~~g~~~~~~~Lpl~~~~~~g~~~~~~~~~~~~~~~GT~V~v~l~~ 179 (471)
T 1mu5_A 110 GLGVKAAVLYSQMHQDKPIEIETSPVNSKRIYTFKLKIDINKNEPIIVERGSVENTRGFHGTSVAISIPG 179 (471)
T ss_dssp TTTHHHHHHHHHHHCCCCEEEEEECTTCSEEEEEEEEECTTTCCEEEEEEEEEECCTTCCEEEEEEEEEC
T ss_pred eeeHHHHHHHHHHhCCCceeEEEecCCCceEEEEEEeccccccCCcccccccccCCCCCCCEEEEEEEcC
Confidence 8999999999997 99999986443 55555 2244456665552 34799999999643
No 29
>1kij_A DNA gyrase subunit B; topoisomerase, gyrase B-coumarin complex, isomerase; HET: DNA NOV; 2.30A {Thermus thermophilus} SCOP: d.14.1.3 d.122.1.2
Probab=79.45 E-value=0.61 Score=45.37 Aligned_cols=56 Identities=9% Similarity=-0.062 Sum_probs=38.0
Q ss_pred CccceeeeeecCeeEEEeecCCCCceeeeeC-CCCceEEeeCCC---CCCccEEEEeeccc
Q psy4716 1 MNGFYSAYLVADKVTVTSKHNDDEQYIWESS-AGGSFTIKPDNS---QPLGRLLVEKEREK 57 (334)
Q Consensus 1 gvGfyS~f~Va~~v~v~tr~~~~~~~~w~s~-~~g~~~i~~~~~---~~~Gt~i~l~~~~~ 57 (334)
|+|++++..+|++++|.|++.+ ..|.++-. |.....+.+... .++||+|..++-+.
T Consensus 114 G~Gls~v~als~~~~v~t~~~g-~~~~~~~~~G~~~~~~~~~~~~~~~~~GT~V~f~Pd~~ 173 (390)
T 1kij_A 114 GVGASVVNALSEWTVVEVFREG-KHHRIAFSRGEVTEPLRVVGEAPRGKTGTRVTFKPDPE 173 (390)
T ss_dssp TTSHHHHHHTEEEEEEEEEETT-EEEEEEEETTEEEEEEEEEEECGGGCCEEEEEEEECHH
T ss_pred CcceeeecccccceEEEEecCC-cEEEEEEcCCcccccceeeccccCCCCCcEEEEEEChH
Confidence 8999999999999999999753 34443332 322334443321 46999999986443
No 30
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae}
Probab=63.56 E-value=3.3 Score=41.82 Aligned_cols=56 Identities=9% Similarity=0.011 Sum_probs=38.5
Q ss_pred CccceeeeeecC-----eeEEEeecCCCC-ceeee----eC--CCCceEEeeCC--CCCCccEEEEeecc
Q psy4716 1 MNGFYSAYLVAD-----KVTVTSKHNDDE-QYIWE----SS--AGGSFTIKPDN--SQPLGRLLVEKERE 56 (334)
Q Consensus 1 gvGfyS~f~Va~-----~v~v~tr~~~~~-~~~w~----s~--~~g~~~i~~~~--~~~~Gt~i~l~~~~ 56 (334)
|+|+++|..+++ +++|.|+..+.. ++.|. .. ++......+.. ...+||+|.+.++.
T Consensus 109 GLGLsiv~~l~~~~gG~~I~V~S~~~~g~~~~~~~Lpl~~~~~~g~~~~~~~~~~~~~~~GT~V~v~l~~ 178 (530)
T 2zbk_B 109 GLGVKAAVLYSQMHQDKPIEIETSPVNSKRIYTFKLKIDINKNEPIIVERGSVENTRGFHGTSVAISIPG 178 (530)
T ss_dssp SSHHHHHHHHHHHHCCCCEEEEEECTTCSEEEEEEEEEETTTTEEEEEEEEEEECCSSCCEEEEEEEEEC
T ss_pred cchHHHHHHHHHHhCCCceEEEEecCCCeEEEEEEEEecccccCCccccccccCCCCCCCCcEEEEEecc
Confidence 899999999999 799999976443 55554 22 22334444442 24789999999654
No 31
>3fv5_A DNA topoisomerase 4 subunit B; topoisomerase IV B subunit complex, antibiotic resistance, ATP-binding, nucleotide-binding; HET: DNA 1EU; 1.80A {Escherichia coli} PDB: 1s14_A*
Probab=58.10 E-value=4.3 Score=35.65 Aligned_cols=57 Identities=12% Similarity=0.097 Sum_probs=34.5
Q ss_pred CccceeeeeecCeeEEEeecCCCCceeeeeCCCCce--EEeeC---CCCCCccEEEEeeccccc
Q psy4716 1 MNGFYSAYLVADKVTVTSKHNDDEQYIWESSAGGSF--TIKPD---NSQPLGRLLVEKEREKEL 59 (334)
Q Consensus 1 gvGfyS~f~Va~~v~v~tr~~~~~~~~w~s~~~g~~--~i~~~---~~~~~Gt~i~l~~~~~~~ 59 (334)
|+|.-|.-.||++++|.||..+ ..|.-+-. +|.- .+..+ ...+.||+|...+.++-+
T Consensus 99 GeglssinalS~~l~v~t~~~g-~~~~~~~~-~G~~~~~~~~~g~~~~~~~GT~V~f~Pdr~~F 160 (201)
T 3fv5_A 99 GVGISVVNALSKRVEVNVRRDG-QVYNIAFE-NGEKVQDLQVVGTCGKRNTGTSVHFWPDETFF 160 (201)
T ss_dssp ---CHHHHHTEEEEEEEEEETT-EEEEEEEE-TTEEEEEEEEEEECCTTCCEEEEEEEECGGGS
T ss_pred ceecchhhcccceEEEEEEecC-ceEEEEEe-CCEEcccceecccCCCCCCCeEEEEEECHHHc
Confidence 7899999999999999999754 23432222 2432 23222 124799999998755443
No 32
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei}
Probab=51.84 E-value=5.9 Score=40.85 Aligned_cols=55 Identities=20% Similarity=0.210 Sum_probs=38.8
Q ss_pred CccceeeeeecCe-----eEEEeecCC-CCceeee-----eCCCCceEE-eeCC-CCCCccEEEEeec
Q psy4716 1 MNGFYSAYLVADK-----VTVTSKHND-DEQYIWE-----SSAGGSFTI-KPDN-SQPLGRLLVEKER 55 (334)
Q Consensus 1 gvGfyS~f~Va~~-----v~v~tr~~~-~~~~~w~-----s~~~g~~~i-~~~~-~~~~Gt~i~l~~~ 55 (334)
|+|+++|..+++. ++|.|+..+ ..++.|+ +.|.+.... ...+ ...+||+|.++++
T Consensus 114 GlGLsiv~~ls~~~gG~~I~V~S~~~gg~~g~~~~~~lp~~~g~~~~~~~~~~~~~~~~GT~V~~~f~ 181 (621)
T 2q2e_B 114 GIGISAAVLYAQMTAGRHTKILSKTSPTAPAHYYELMINTSTNEPDILVDEVRDWFRPHGTQIELEMR 181 (621)
T ss_dssp SHHHHHHHHHHHHHTCCCCEEEEECSSSSCEEEEECCCCSSSCSCCCCCEEECCCSCSSCCCEEEECS
T ss_pred eechhhhhHHHHHhCCCceeEEeeccCCccceEEEEecchhcccccccccccccCCCCCCCEEEEEec
Confidence 8999999999988 599998764 3567766 566665522 2222 2469999999953
No 33
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=41.21 E-value=16 Score=28.03 Aligned_cols=48 Identities=13% Similarity=0.265 Sum_probs=29.6
Q ss_pred hhHHHHhccccCceEEEEeCCCHHHHhcChhHHHHHhCCcEEEeecCchhHH
Q psy4716 82 DEDYVARMKENQKQIYYITGETKDQVANSSFVERVKKRGFEVIYMTEPIDEY 133 (334)
Q Consensus 82 l~eYv~rmke~Qk~IYY~tg~s~~~~~~SP~lE~~k~kg~EVL~l~dpiDe~ 133 (334)
|.+.+..++.+++-|.||.+..|.. -....+++.||++..|..-+..|
T Consensus 46 l~~~~~~l~~~~~ivv~C~~G~rS~----~aa~~L~~~G~~~~~l~GG~~~W 93 (103)
T 3iwh_A 46 IPDNLNSFNKNEIYYIVCAGGVRSA----KVVEYLEANGIDAVNVEGGMHAW 93 (103)
T ss_dssp GGGCGGGCCTTSEEEEECSSSSHHH----HHHHHHHTTTCEEEEETTHHHHH
T ss_pred hhhhhhhhcCCCeEEEECCCCHHHH----HHHHHHHHcCCCEEEecChHHHH
Confidence 3333444444555455665555532 34567889999999887766655
No 34
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=34.91 E-value=24 Score=26.47 Aligned_cols=48 Identities=13% Similarity=0.277 Sum_probs=30.4
Q ss_pred hhHHHHhccccCceEEEEeCCCHHHHhcChhHHHHHhCCcEEEeecCchhHH
Q psy4716 82 DEDYVARMKENQKQIYYITGETKDQVANSSFVERVKKRGFEVIYMTEPIDEY 133 (334)
Q Consensus 82 l~eYv~rmke~Qk~IYY~tg~s~~~~~~SP~lE~~k~kg~EVL~l~dpiDe~ 133 (334)
|.+.+..++.++.-|.|+.+..+ ..-....++..||+|.+|..-+..|
T Consensus 46 l~~~~~~l~~~~~iv~yC~~g~r----s~~a~~~L~~~G~~v~~l~GG~~~W 93 (103)
T 3eme_A 46 IPDNLNSFNKNEIYYIVCAGGVR----SAKVVEYLEANGIDAVNVEGGMHAW 93 (103)
T ss_dssp GGGCGGGCCTTSEEEEECSSSSH----HHHHHHHHHTTTCEEEEETTHHHHH
T ss_pred HHHHHHhCCCCCeEEEECCCChH----HHHHHHHHHHCCCCeEEeCCCHHHH
Confidence 34444444444444556655533 3345677889999999998877665
No 35
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=33.44 E-value=31 Score=25.68 Aligned_cols=47 Identities=13% Similarity=0.278 Sum_probs=28.9
Q ss_pred hHHHHhccccCceEEEEeCCCHHHHhcChhHHHHHhCCcEEEeecCchhHH
Q psy4716 83 EDYVARMKENQKQIYYITGETKDQVANSSFVERVKKRGFEVIYMTEPIDEY 133 (334)
Q Consensus 83 ~eYv~rmke~Qk~IYY~tg~s~~~~~~SP~lE~~k~kg~EVL~l~dpiDe~ 133 (334)
.+.+...+.++.-|.|+.+. ....-....++..||.|..+..-+..|
T Consensus 47 ~~~~~~l~~~~~ivvyC~~g----~rs~~a~~~L~~~G~~v~~l~GG~~~W 93 (100)
T 3foj_A 47 PDNLNYFNDNETYYIICKAG----GRSAQVVQYLEQNGVNAVNVEGGMDEF 93 (100)
T ss_dssp GGCGGGSCTTSEEEEECSSS----HHHHHHHHHHHTTTCEEEEETTHHHHH
T ss_pred HHHHHhCCCCCcEEEEcCCC----chHHHHHHHHHHCCCCEEEecccHHHH
Confidence 33334444444445555444 233456677889999999998877664
No 36
>1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=29.24 E-value=37 Score=32.68 Aligned_cols=58 Identities=12% Similarity=0.082 Sum_probs=36.3
Q ss_pred CccceeeeeecCeeEEEeecCCCCceeeeeCCC-CceEEeeC---CCCCCccEEEEeeccccc
Q psy4716 1 MNGFYSAYLVADKVTVTSKHNDDEQYIWESSAG-GSFTIKPD---NSQPLGRLLVEKEREKEL 59 (334)
Q Consensus 1 gvGfyS~f~Va~~v~v~tr~~~~~~~~w~s~~~-g~~~i~~~---~~~~~Gt~i~l~~~~~~~ 59 (334)
|+|.-|+=.+|.+++|.|+..+ ..|..+-.++ -...+.++ ...+.||+|..++-+.-+
T Consensus 113 GvGls~vnalS~~l~v~~~r~g-~~~~~~~~~G~~~~~~~~~g~~~~~~~GT~V~f~Pd~~~F 174 (390)
T 1s16_A 113 GVGISVVNALSKRVEVNVRRDG-QVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFF 174 (390)
T ss_dssp SCHHHHHHHTEEEEEEEEEETT-EEEEEEEETTEEEEEEEEEEECCTTCCEEEEEEEECGGGS
T ss_pred ccchHHHHHhhcccEEEEEECC-cEEEEEEeCCcccccceecccccCCCCceEEEEEECcccc
Confidence 7888888889999999999743 4444333221 11222222 112689999998755444
No 37
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=28.46 E-value=50 Score=25.03 Aligned_cols=48 Identities=10% Similarity=0.217 Sum_probs=30.1
Q ss_pred HHhccccCceEEEEeCCCHHHHhcChhHHHHHhCCcEEEeecCchhHHHHHh
Q psy4716 86 VARMKENQKQIYYITGETKDQVANSSFVERVKKRGFEVIYMTEPIDEYVVQQ 137 (334)
Q Consensus 86 v~rmke~Qk~IYY~tg~s~~~~~~SP~lE~~k~kg~EVL~l~dpiDe~~i~~ 137 (334)
+.....++.-|.|+.+..+ ..-....++..||+|..|..-+..|.-..
T Consensus 49 ~~~l~~~~~ivvyC~~G~r----s~~aa~~L~~~G~~v~~l~GG~~~W~~~~ 96 (108)
T 3gk5_A 49 WKILERDKKYAVICAHGNR----SAAAVEFLSQLGLNIVDVEGGIQSWIEEG 96 (108)
T ss_dssp GGGSCTTSCEEEECSSSHH----HHHHHHHHHTTTCCEEEETTHHHHHHHTT
T ss_pred HHhCCCCCeEEEEcCCCcH----HHHHHHHHHHcCCCEEEEcCcHHHHHHcC
Confidence 3333333444455544423 34456788899999999999888775433
No 38
>2pnw_A AGR_C_15P, membrane-bound lytic murein transglycosylase; structural genomics, PSI-2, protein structure initiative; 1.90A {Agrobacterium tumefaciens str} SCOP: b.52.1.4
Probab=25.69 E-value=29 Score=33.62 Aligned_cols=31 Identities=16% Similarity=0.472 Sum_probs=25.4
Q ss_pred CCHHHHhcChhHHHHHhCCcEEEeecCchhHHHHH
Q psy4716 102 ETKDQVANSSFVERVKKRGFEVIYMTEPIDEYVVQ 136 (334)
Q Consensus 102 ~s~~~~~~SP~lE~~k~kg~EVL~l~dpiDe~~i~ 136 (334)
.+|.++... .+..+|.|+.++.||+|-|++|
T Consensus 157 ~~R~eI~~g----al~g~~leiaw~~dpvd~fflq 187 (380)
T 2pnw_A 157 PDRRAIDEG----CLRGRGLEIAWARSKVDLFFVH 187 (380)
T ss_dssp CCHHHHHTT----TTTTSSCEEEEESCHHHHHHHH
T ss_pred CCHHHHhcC----cccCCCcEEEEECCHHHHHHhh
Confidence 377777642 4578999999999999999984
No 39
>4emv_A DNA topoisomerase IV, B subunit; protein-inhibitor complex, ATP binding, structure-based drug antimicrobial, virtual screen; HET: DNA 0R9; 1.70A {Streptococcus pneumoniae GA47373} PDB: 4em7_A*
Probab=25.26 E-value=59 Score=28.94 Aligned_cols=57 Identities=11% Similarity=0.064 Sum_probs=35.9
Q ss_pred CccceeeeeecCeeEEEeecCCCCcee--eeeCC-C--Cce-EEeeCCCCCCccEEEEeeccccc
Q psy4716 1 MNGFYSAYLVADKVTVTSKHNDDEQYI--WESSA-G--GSF-TIKPDNSQPLGRLLVEKEREKEL 59 (334)
Q Consensus 1 gvGfyS~f~Va~~v~v~tr~~~~~~~~--w~s~~-~--g~~-~i~~~~~~~~Gt~i~l~~~~~~~ 59 (334)
|||.-++=.++.+.+|.+++.+ ..|. |+ .| . +.- .+.++.....||+|...+.+.-+
T Consensus 121 GvG~svvNALS~~l~v~v~r~g-~~~~q~f~-~Gg~~~~~l~~ig~~~~~~~GT~V~F~PD~~iF 183 (226)
T 4emv_A 121 GVGSSVVNALSSWLEVEITRDG-AVYKQRFE-NGGKPVTTLKKIGTALKSKTGTKVTFMPDATIF 183 (226)
T ss_dssp GCCHHHHHHTEEEEEEEEEETT-EEEEEEEE-TTTEESSCSEEEEECCTTCCEEEEEEEECTTTC
T ss_pred cccchhhhhcccceEEEEEeCC-cEEEEEEC-CCCEEcCCceEecccCCCCCCeEEEEEECHHHc
Confidence 6777777778899999998753 3343 54 22 1 111 23344335799999998755544
No 40
>2g5d_A GNA33; hydrolase, beta barrel; 1.95A {Neisseria gonorrhoeae fa 1090} SCOP: b.52.1.4 PDB: 2g6g_A
Probab=25.08 E-value=33 Score=33.66 Aligned_cols=32 Identities=13% Similarity=0.367 Sum_probs=25.8
Q ss_pred CCHHHHhcChhHHHHHhCCcEEEeecCchhHHHHHh
Q psy4716 102 ETKDQVANSSFVERVKKRGFEVIYMTEPIDEYVVQQ 137 (334)
Q Consensus 102 ~s~~~~~~SP~lE~~k~kg~EVL~l~dpiDe~~i~~ 137 (334)
.+|.++.+. .+..+|.|+.++.||+|-||+|-
T Consensus 211 ~tR~eI~~g----al~g~glelaw~~dpvd~FflqI 242 (422)
T 2g5d_A 211 HTRNQINGG----ALDGKAPILGYAEDPVELFFMHI 242 (422)
T ss_dssp CCHHHHHTT----TTTTSSCEEEEESCHHHHHHHHH
T ss_pred CCHHHHhcC----cccCCCcEEEEeCCHHHHHHhhh
Confidence 378777643 46789999999999999999753
No 41
>3s99_A Basic membrane lipoprotein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, adenine; HET: ADE; 2.05A {Brucella melitensis biovar abortus}
Probab=23.71 E-value=1.1e+02 Score=28.59 Aligned_cols=44 Identities=16% Similarity=0.232 Sum_probs=35.7
Q ss_pred hcChhHHHHHhCCcEEEeecCc-hhHHHHHhhhhcCCCceeeccc
Q psy4716 108 ANSSFVERVKKRGFEVIYMTEP-IDEYVVQQLKDYDGKTLVSVTK 151 (334)
Q Consensus 108 ~~SP~lE~~k~kg~EVL~l~dp-iDe~~i~~l~~y~gkkf~sV~~ 151 (334)
..-++++.+..+|+++|++... ..+.+.....+|.+.+|+-++.
T Consensus 74 d~~~~l~~l~~~g~d~Ii~~g~~~~~~~~~vA~~~Pdv~fv~id~ 118 (356)
T 3s99_A 74 DAERSIKRIARAGNKLIFTTSFGYMDPTVKVAKKFPDVKFEHATG 118 (356)
T ss_dssp HHHHHHHHHHHTTCSEEEECSGGGHHHHHHHHTTCTTSEEEEESC
T ss_pred HHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCCEEEEEec
Confidence 3467999999999999999874 4555666667999999999976
No 42
>1mgs_A Human melanoma growth stimulatory activity; chemokine(growth factor); NMR {Homo sapiens} SCOP: d.9.1.1 PDB: 1msg_A 1msh_A 1qnk_A
Probab=21.81 E-value=67 Score=23.15 Aligned_cols=20 Identities=25% Similarity=0.424 Sum_probs=17.3
Q ss_pred cceEEEcCCChHHHHHHHhh
Q psy4716 236 KKHLEINPDHSIVETLRQKA 255 (334)
Q Consensus 236 k~~LEINp~HplIkkL~~~~ 255 (334)
.+.+.+||++|.|+++.+.+
T Consensus 47 g~~vC~dP~~~wVk~~i~~l 66 (73)
T 1mgs_A 47 GRKACLNPASPIVKKIIEKM 66 (73)
T ss_dssp SCEEEECTTSHHHHHHHHHH
T ss_pred CCEEecCCChHHHHHHHHHH
Confidence 46799999999999998754
Done!