RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4716
(334 letters)
>3q6m_A Heat shock protein HSP 90-alpha; three domains, trimer of dimer,
hexamer, chaperone; 3.00A {Homo sapiens} PDB: 3q6n_A
Length = 448
Score = 365 bits (940), Expect = e-125
Identities = 194/252 (76%), Positives = 218/252 (86%)
Query: 83 EDYVARMKENQKQIYYITGETKDQVANSSFVERVKKRGFEVIYMTEPIDEYVVQQLKDYD 142
+DY RMKENQK IYYITGETKDQVANS+FVER++K G EVIYM EPIDEY VQQLK+++
Sbjct: 188 KDYCTRMKENQKHIYYITGETKDQVANSAFVERLRKHGLEVIYMIEPIDEYCVQQLKEFE 247
Query: 143 GKTLVSVTKEGLELPEDEEEKKKREEDKVKFENLCKVMKDILDKKVEKVIVSNRLVDSPC 202
GKTLVSVTKEGLELPEDEEEKKK+EE K KFENLCK+MKDIL+KKVEKV+VSNRLV SPC
Sbjct: 248 GKTLVSVTKEGLELPEDEEEKKKQEEKKTKFENLCKIMKDILEKKVEKVVVSNRLVTSPC 307
Query: 203 CIVTSQYGWTANMERIMKAQALRDTSTMGYMAAKKHLEINPDHSIVETLRQKADADKNDK 262
CIVTS YGWTANMERIMKAQALRD STMGYMAAKKHLEINPDHSI+ETLRQKA+ADKNDK
Sbjct: 308 CIVTSTYGWTANMERIMKAQALRDNSTMGYMAAKKHLEINPDHSIIETLRQKAEADKNDK 367
Query: 263 AVKDLVNLLFETSLLSSGFTLEEPQVHAARIHRMIKLGLGIEDEDEVATGDDVKAGDIPV 322
+VKDLV LL+ET+LLSSGF+LE+PQ HA RI+RMIKLGLGI+++D A +
Sbjct: 368 SVKDLVILLYETALLSSGFSLEDPQTHANRIYRMIKLGLGIDEDDPTADDTSAAVTEEMP 427
Query: 323 AEGEAEDASRME 334
+D SRME
Sbjct: 428 PLEGDDDTSRME 439
Score = 27.7 bits (62), Expect = 5.5
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 6/34 (17%)
Query: 58 ELSEDEEEEKKEEEKEEDKTPKLEDEDYVARMKE 91
EL EDEEE+KK+EEK+ + E+ MK+
Sbjct: 260 ELPEDEEEKKKQEEKKT------KFENLCKIMKD 287
>3hjc_A Heat shock protein 83-1; sleeping sickness, structura genomics,
stress response protein, chaperone, structural GE
consortium, SGC; 2.50A {Leishmania major}
Length = 444
Score = 362 bits (932), Expect = e-124
Identities = 135/242 (55%), Positives = 184/242 (76%), Gaps = 2/242 (0%)
Query: 83 EDYVARMKENQKQIYYITGETKDQVANSSFVERVKKRGFEVIYMTEPIDEYVVQQLKDYD 142
+DYV RMK QK IYYITG++K ++ S F+E+ ++RG EV++MTEPIDEYV+QQ+KD++
Sbjct: 204 KDYVTRMKAGQKSIYYITGDSKKKLETSPFIEQARRRGLEVLFMTEPIDEYVMQQVKDFE 263
Query: 143 GKTLVSVTKEGLELPEDEEEKKKREEDKVKFENLCKVMKDILDKKVEKVIVSNRLVDSPC 202
K +TKEG+ E EEEK++REE+K E LCK MK++L KVEKVIVS RL SPC
Sbjct: 264 DKKFACLTKEGVHFEESEEEKQQREEEKAACEKLCKTMKEVLGDKVEKVIVSERLSTSPC 323
Query: 203 CIVTSQYGWTANMERIMKAQALRDTSTMGYMAAKKHLEINPDHSIVETLRQKADADKNDK 262
+VTS++GW+A+ME+IM+ QALRD+S YM +KK +E+NP H I++ LR++ AD+NDK
Sbjct: 324 ILVTSEFGWSAHMEQIMRNQALRDSSMAQYMMSKKTMELNPRHPIIKELRRRVGADENDK 383
Query: 263 AVKDLVNLLFETSLLSSGFTLEEPQVHAARIHRMIKLGLGIEDEDEVATGDDVKAGDIPV 322
AVKDLV LLF+TSLL+SGF LE+P +A RI+RMIKLGL +++E+E A + +
Sbjct: 384 AVKDLVFLLFDTSLLTSGFQLEDPTGYAERINRMIKLGLSLDEEEEEA--AEAPVAETAP 441
Query: 323 AE 324
AE
Sbjct: 442 AE 443
Score = 26.9 bits (60), Expect = 9.8
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 61 EDEEEEKKEEEKEEDKTPKLEDEDYVARMKE 91
E E+ EEEK++ + K E MKE
Sbjct: 273 EGVHFEESEEEKQQREEEKAACEKLCKTMKE 303
>2cge_A ATP-dependent molecular chaperone HSP82; chaperone complex, heat
shock protein, CO-chaperone, ATP-binding, heat shock;
3.0A {Saccharomyces cerevisiae}
Length = 405
Score = 340 bits (875), Expect = e-116
Identities = 120/231 (51%), Positives = 168/231 (72%), Gaps = 4/231 (1%)
Query: 72 KEEDKTPKLEDEDYVARMKENQKQIYYITGETKDQVANSSFVERVKKRGFEVIYMTEPID 131
K D+ L D YV RM E+QK IYYITGE+ V S F++ +K + FEV+++T+PID
Sbjct: 177 KSVDELTSLTD--YVTRMPEHQKNIYYITGESLKAVEKSPFLDALKAKNFEVLFLTDPID 234
Query: 132 EYVVQQLKDYDGKTLVSVTKEGLELPEDEEEKKKREEDKVKFENLCKVMKDILDKKVEKV 191
EY QLK+++GKTLV +TK+ EL E +EEK +RE++ ++E L K +K+IL +VEKV
Sbjct: 235 EYAFTQLKEFEGKTLVDITKD-FELEETDEEKAEREKEIKEYEPLTKALKEILGDQVEKV 293
Query: 192 IVSNRLVDSPCCIVTSQYGWTANMERIMKAQALRDTSTMGYMAAKKHLEINPDHSIVETL 251
+VS +L+D+P I T Q+GW+ANMERIMKAQALRD+S YM++KK EI+P I++ L
Sbjct: 294 VVSYKLLDAPAAIRTGQFGWSANMERIMKAQALRDSSMSSYMSSKKTFEISPKSPIIKEL 353
Query: 252 RQKAD-ADKNDKAVKDLVNLLFETSLLSSGFTLEEPQVHAARIHRMIKLGL 301
+++ D DK VKDL LL+ET+LL+SGF+L+EP A+RI+R+I LGL
Sbjct: 354 KKRVDEGGAQDKTVKDLTKLLYETALLTSGFSLDEPTSFASRINRLISLGL 404
Score = 28.8 bits (65), Expect = 2.4
Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 6/45 (13%)
Query: 47 GRLLVEKEREKELSEDEEEEKKEEEKEEDKTPKLEDEDYVARMKE 91
G+ LV+ ++ EL E +EE+ + E++ + E E +KE
Sbjct: 246 GKTLVDITKDFELEETDEEKAEREKEIK------EYEPLTKALKE 284
>2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96;
HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A*
2o1w_A 2o1t_A
Length = 666
Score = 325 bits (834), Expect = e-106
Identities = 107/241 (44%), Positives = 156/241 (64%), Gaps = 6/241 (2%)
Query: 72 KEEDKTPKLEDEDYVARMKENQKQIYYITGETKDQVANSSFVERVKKRGFEVIYMTEPID 131
L+ YV RMKE Q +IY++ G ++ + +S FVER+ K+G+EVIY+TEP+D
Sbjct: 428 HHPSDITSLDQ--YVERMKEKQDKIYFMAGSSRKEAESSPFVERLLKKGYEVIYLTEPVD 485
Query: 132 EYVVQQLKDYDGKTLVSVTKEGLELPEDEEEKKKREEDKVKFENLCKVMKD-ILDKKVEK 190
EY +Q L ++DGK +V KEG++ E E+ K+ RE + +FE L MKD L K+EK
Sbjct: 486 EYCIQALPEFDGKRFQNVAKEGVKFDESEKTKESREAIEKEFEPLLNWMKDKALKDKIEK 545
Query: 191 VIVSNRLVDSPCCIVTSQYGWTANMERIMKAQAL---RDTSTMGYMAAKKHLEINPDHSI 247
+VS RL +SPC +V SQYGW+ NMERIMKAQA +D ST Y + KK EINP H +
Sbjct: 546 AVVSQRLTESPCALVASQYGWSGNMERIMKAQAYQTGKDISTNYYASQKKTFEINPRHPL 605
Query: 248 VETLRQKADADKNDKAVKDLVNLLFETSLLSSGFTLEEPQVHAARIHRMIKLGLGIEDED 307
++ + ++ D++DK V DL +LFET+ L SG+ L + + + RI RM++L L I+ +
Sbjct: 606 IKDMLRRVKEDEDDKTVSDLAVVLFETATLRSGYLLPDTKAYGDRIERMLRLSLNIDPDA 665
Query: 308 E 308
+
Sbjct: 666 K 666
Score = 87.7 bits (218), Expect = 3e-19
Identities = 36/106 (33%), Positives = 49/106 (46%), Gaps = 18/106 (16%)
Query: 3 GFYSAYLVADKVTVTSKHNDDEQYIWESSAGGSFTIKPDNSQPLGR-----LLVEKEREK 57
GFYSA+LVADKV VTSKHN+D Q+IWES + I LGR L++++E
Sbjct: 147 GFYSAFLVADKVIVTSKHNNDTQHIWESDSNEFSVIADPRGNTLGRGTTITLVLKEEASD 206
Query: 58 ELSEDEEEE--KK-----------EEEKEEDKTPKLEDEDYVARMK 90
L D + KK K + D + + +K
Sbjct: 207 YLELDTIKNLVKKYSQFINFPIYVWSSKTGGGGKTVWDWELMNDIK 252
Score = 28.0 bits (63), Expect = 5.7
Identities = 8/33 (24%), Positives = 16/33 (48%)
Query: 60 SEDEEEEKKEEEKEEDKTPKLEDEDYVARMKEN 92
E + ++ E+ KE + + E E + MK+
Sbjct: 505 KEGVKFDESEKTKESREAIEKEFEPLLNWMKDK 537
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90,
heat shock protein, ATP-binding, heat shock,
nucleotide-binding, acetylation; HET: ATP; 3.1A
{Saccharomyces cerevisiae}
Length = 677
Score = 312 bits (802), Expect = e-102
Identities = 120/231 (51%), Positives = 168/231 (72%), Gaps = 4/231 (1%)
Query: 72 KEEDKTPKLEDEDYVARMKENQKQIYYITGETKDQVANSSFVERVKKRGFEVIYMTEPID 131
K D+ L D YV RM E+QK IYYITGE+ V S F++ +K + FEV+++T+PID
Sbjct: 449 KSVDELTSLTD--YVTRMPEHQKNIYYITGESLKAVEKSPFLDALKAKNFEVLFLTDPID 506
Query: 132 EYVVQQLKDYDGKTLVSVTKEGLELPEDEEEKKKREEDKVKFENLCKVMKDILDKKVEKV 191
EY QLK+++GKTLV +TK+ EL E +EEK +RE++ ++E L K +K+IL +VEKV
Sbjct: 507 EYAFTQLKEFEGKTLVDITKD-FELEETDEEKAEREKEIKEYEPLTKALKEILGDQVEKV 565
Query: 192 IVSNRLVDSPCCIVTSQYGWTANMERIMKAQALRDTSTMGYMAAKKHLEINPDHSIVETL 251
+VS +L+D+P I T Q+GW+ANMERIMKAQALRD+S YM++KK EI+P I++ L
Sbjct: 566 VVSYKLLDAPAAIRTGQFGWSANMERIMKAQALRDSSMSSYMSSKKTFEISPKSPIIKEL 625
Query: 252 RQKAD-ADKNDKAVKDLVNLLFETSLLSSGFTLEEPQVHAARIHRMIKLGL 301
+++ D DK VKDL LL+ET+LL+SGF+L+EP A+RI+R+I LGL
Sbjct: 626 KKRVDEGGAQDKTVKDLTKLLYETALLTSGFSLDEPTSFASRINRLISLGL 676
Score = 94.4 bits (235), Expect = 1e-21
Identities = 48/130 (36%), Positives = 67/130 (51%), Gaps = 38/130 (29%)
Query: 3 GFYSAYLVADKVTVTSKHNDDEQYIWESSAGGSFTIKPDNS-QPLGR------------- 48
GFYS +LVAD+V V SK NDDEQYIWES+AGGSFT+ D + +GR
Sbjct: 123 GFYSLFLVADRVQVISKSNDDEQYIWESNAGGSFTVTLDEVNERIGRGTILRLFLKDDQL 182
Query: 49 ------------------------LLVEKEREKELSEDEEEEKKEEEKEEDKTPKLEDED 84
L+V KE EKE+ EEE+K EE+K+E+K + + +
Sbjct: 183 EYLEEKRIKEVIKRHSEFVAYPIQLVVTKEVEKEVPIPEEEKKDEEKKDEEKKDEDDKKP 242
Query: 85 YVARMKENQK 94
+ + E ++
Sbjct: 243 KLEEVDEEEE 252
Score = 27.4 bits (61), Expect = 9.1
Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 6/45 (13%)
Query: 47 GRLLVEKEREKELSEDEEEEKKEEEKEEDKTPKLEDEDYVARMKE 91
G+ LV+ ++ EL E +EE+ + E++ + E E +KE
Sbjct: 518 GKTLVDITKDFELEETDEEKAEREKEIK------EYEPLTKALKE 556
>2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A
{Escherichia coli} PDB: 2iop_A
Length = 624
Score = 266 bits (682), Expect = 2e-84
Identities = 62/216 (28%), Positives = 119/216 (55%), Gaps = 11/216 (5%)
Query: 83 EDYVARMKENQKQIYYITGETKDQVANSSFVERVKKRGFEVIYMTEPIDEYVVQQLKDYD 142
EDYV+RMKE Q++IYYIT ++ +S +E ++K+G EV+ +++ IDE+++ L ++D
Sbjct: 417 EDYVSRMKEGQEKIYYITADSYAAAKSSPHLELLRKKGIEVLLLSDRIDEWMMNYLTEFD 476
Query: 143 GKTLVSVTKEGLELPE-DEEEKKKREEDKVKFENLCKVMKDILDKKVEKVIVSNRLVDSP 201
GK SV+K L + +E + +E + +K +L ++V+ V +++RL D+P
Sbjct: 477 GKPFQSVSKVDESLEKLADEVDESAKEAEKALTPFIDRVKALLGERVKDVRLTHRLTDTP 536
Query: 202 CCIVTSQYGWTANMERIMKAQALRDTSTMGYMAAKKHLEINPDHSIVETLRQKADADKND 261
+ T + M ++ A + K E+NPDH +V ++A +++
Sbjct: 537 AIVSTDADEMSTQMAKLFAAAGQK------VPEVKYIFELNPDHVLV----KRAADTEDE 586
Query: 262 KAVKDLVNLLFETSLLSSGFTLEEPQVHAARIHRMI 297
+ V LL + +LL+ TLE+P + R+++++
Sbjct: 587 AKFSEWVELLLDQALLAERGTLEDPNLFIRRMNQLL 622
Score = 70.7 bits (174), Expect = 1e-13
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 3 GFYSAYLVADKVTVTSK---HNDDEQYIWESSAGGSFTIKPDNSQPLG 47
GFYSA++VADKVTV ++ + WES+ G +T+ + G
Sbjct: 126 GFYSAFIVADKVTVRTRAAGEKPENGVFWESAGEGEYTVADITKEDRG 173
>1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET:
ADP; 2.90A {Escherichia coli} PDB: 1y4u_A
Length = 559
Score = 200 bits (511), Expect = 5e-60
Identities = 44/141 (31%), Positives = 82/141 (58%), Gaps = 1/141 (0%)
Query: 83 EDYVARMKENQKQIYYITGETKDQVANSSFVERVKKRGFEVIYMTEPIDEYVVQQLKDYD 142
EDYV+RMKE Q++IYYIT ++ +S +E ++K+G EV+ +++ IDE+++ L ++D
Sbjct: 417 EDYVSRMKEGQEKIYYITADSYAAAKSSPHLELLRKKGIEVLLLSDRIDEWMMNYLTEFD 476
Query: 143 GKTLVSVTKEGLELPE-DEEEKKKREEDKVKFENLCKVMKDILDKKVEKVIVSNRLVDSP 201
GK SV+K L + +E + +E + +K +L ++V+ V +++RL D+P
Sbjct: 477 GKPFQSVSKVDESLEKLADEVDESAKEAEKALTPFIDRVKALLGERVKDVRLTHRLTDTP 536
Query: 202 CCIVTSQYGWTANMERIMKAQ 222
+ T + M ++ A
Sbjct: 537 AIVSTDADEMSTQMAKLFAAA 557
Score = 69.9 bits (172), Expect = 2e-13
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 3 GFYSAYLVADKVTVTSK---HNDDEQYIWESSAGGSFTIKPDNSQPLG 47
GFYSA++VADKVTV ++ + WES+ G +T+ + G
Sbjct: 126 GFYSAFIVADKVTVRTRAAGEKPENGVFWESAGEGEYTVADITKEDRG 173
>1sf8_A Chaperone protein HTPG; four helix bundle dimerization interface,
exposed amphipathic helix, three stranded beta sheet;
2.60A {Escherichia coli} SCOP: d.271.1.1
Length = 126
Score = 169 bits (430), Expect = 8e-53
Identities = 29/133 (21%), Positives = 63/133 (47%), Gaps = 10/133 (7%)
Query: 165 KREEDKVKFENLCKVMKDILDKKVEKVIVSNRLVDSPCCIVTSQYGWTANMERIMKAQAL 224
+ + +K +L ++V+ V +++RL D+P + T + M ++ A
Sbjct: 2 RGSHHHHHHGSFIDRVKALLGERVKDVRLTHRLTDTPAIVSTDADEMSTQMAKLFAAAGQ 61
Query: 225 RDTSTMGYMAAKKHLEINPDHSIVETLRQKADADKNDKAVKDLVNLLFETSLLSSGFTLE 284
+ K E+NPDH +V ++A +++ + V LL + +LL+ TLE
Sbjct: 62 KV------PEVKYIFELNPDHVLV----KRAADTEDEAKFSEWVELLLDQALLAERGTLE 111
Query: 285 EPQVHAARIHRMI 297
+P + R+++++
Sbjct: 112 DPNLFIRRMNQLL 124
>1hk7_A Heat shock protein HSP82; ATPase, chaperone; 2.5A {Saccharomyces
cerevisiae} SCOP: d.14.1.8
Length = 288
Score = 166 bits (424), Expect = 8e-50
Identities = 55/113 (48%), Positives = 79/113 (69%), Gaps = 3/113 (2%)
Query: 72 KEEDKTPKLEDEDYVARMKENQKQIYYITGETKDQVANSSFVERVKKRGFEVIYMTEPID 131
K D+ L D YV RM E+QK IYYITGE+ V S F++ +K + FEV+++T+PID
Sbjct: 177 KSVDELTSLTD--YVTRMPEHQKNIYYITGESLKAVEKSPFLDALKAKNFEVLFLTDPID 234
Query: 132 EYVVQQLKDYDGKTLVSVTKEGLELPEDEEEKKKREEDKVKFENLCKVMKDIL 184
EY QLK+++GKTLV +TK+ EL E +EEK +RE++ ++E L K +K+IL
Sbjct: 235 EYAFTQLKEFEGKTLVDITKD-FELEETDEEKAEREKEIKEYEPLTKALKEIL 286
Score = 29.1 bits (66), Expect = 1.8
Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 6/45 (13%)
Query: 47 GRLLVEKEREKELSEDEEEEKKEEEKEEDKTPKLEDEDYVARMKE 91
G+ LV+ ++ EL E +EE+ + E++ + E E +KE
Sbjct: 246 GKTLVDITKDFELEETDEEKAEREKEIK------EYEPLTKALKE 284
>2gq0_A Chaperone protein HTPG; molecular chaperone, HSP90, E. coli,
hydrolase; 1.90A {Escherichia coli}
Length = 303
Score = 160 bits (408), Expect = 3e-47
Identities = 33/115 (28%), Positives = 60/115 (52%), Gaps = 1/115 (0%)
Query: 83 EDYVARMKENQKQIYYITGETKDQVANSSFVERVKKRGFEVIYMTEPIDEYVVQQLKDYD 142
EDYV+RMKE Q++IYYIT ++ +S +E ++K+G EV+ +++ IDE+++ L ++D
Sbjct: 189 EDYVSRMKEGQEKIYYITADSYAAAKSSPHLELLRKKGIEVLLLSDRIDEWMMNYLTEFD 248
Query: 143 GKTLVSVTKEGLELPEDEEEKKKREEDKVKFENLCKVMKDILDKKVEKVIVSNRL 197
GK SV+K L + + + + +DK + +
Sbjct: 249 GKPFQSVSKVDESLEKLADGDLGTLVPRGS-MAISDPNSSSVDKLAAALEHHHHH 302
>3pry_A Heat shock protein HSP 90-beta; structural genomics, structural
genomics consortium, SGC, HE protein, chaperone; 2.28A
{Homo sapiens}
Length = 268
Score = 143 bits (363), Expect = 4e-41
Identities = 63/88 (71%), Positives = 76/88 (86%), Gaps = 2/88 (2%)
Query: 72 KEEDKTPKLEDEDYVARMKENQKQIYYITGETKDQVANSSFVERVKKRGFEVIYMTEPID 131
+ D+ L + YV+RMKE QK IYYITGE+K+QVANS+FVERV+KRGFEV+YMTEPID
Sbjct: 179 QSGDEMTSLSE--YVSRMKETQKSIYYITGESKEQVANSAFVERVRKRGFEVVYMTEPID 236
Query: 132 EYVVQQLKDYDGKTLVSVTKEGLELPED 159
EY VQQLK++DGK+LVSVTKEGLEL E+
Sbjct: 237 EYCVQQLKEFDGKSLVSVTKEGLELAEN 264
>1usu_A Heat shock protein HSP82; chaperone/complex, chaperone, activator,
HSP90; 2.15A {Saccharomyces cerevisiae} SCOP: d.14.1.8
PDB: 1usv_A
Length = 260
Score = 132 bits (335), Expect = 5e-37
Identities = 43/85 (50%), Positives = 59/85 (69%), Gaps = 3/85 (3%)
Query: 72 KEEDKTPKLEDEDYVARMKENQKQIYYITGETKDQVANSSFVERVKKRGFEVIYMTEPID 131
K D+ L D YV RM E+QK IYYITGE+ V S F++ +K + FEV+++T+PID
Sbjct: 179 KSVDELTSLTD--YVTRMPEHQKNIYYITGESLKSVEKSPFLDALKAKNFEVLFLTDPID 236
Query: 132 EYVVQQLKDYDGKTLVSVTKEGLEL 156
EY QLK+++GKTLV +TK+ EL
Sbjct: 237 EYAFTQLKEFEGKTLVDITKD-FEL 260
>1y6z_A Heat shock protein, putative; chaperone, structural genomics,
structural genom consortium, SGC, unknown function;
1.88A {Plasmodium falciparum}
Length = 263
Score = 125 bits (317), Expect = 2e-34
Identities = 31/83 (37%), Positives = 46/83 (55%), Gaps = 4/83 (4%)
Query: 72 KEEDKTPKLEDEDYVARMKENQKQIYYITGETKDQVANSSFVERVKKRGFEVIYMTEPID 131
DK L+ Y+ MKE+QK IYYI+GE K NS +E++K ++V++ EPID
Sbjct: 182 NSGDKKTDLDS--YIENMKEDQKCIYYISGENKKTAQNSPSLEKLKALNYDVLFSLEPID 239
Query: 132 EYVVQQL--KDYDGKTLVSVTKE 152
E+ + L Y G ++ V K
Sbjct: 240 EFCLSSLTVNKYKGYEVLDVNKA 262
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis
lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A*
1u0y_A* 1yt2_A*
Length = 269
Score = 105 bits (264), Expect = 9e-27
Identities = 40/134 (29%), Positives = 57/134 (42%), Gaps = 39/134 (29%)
Query: 3 GFYSAYLVADKVTVTSKHNDDEQYIWESSAGGSFTIKPDNSQPLGR-------------- 48
GFYSA+LVADKV VTSKHN+D Q+IWES + I LGR
Sbjct: 130 GFYSAFLVADKVIVTSKHNNDTQHIWESDSNEFSVIADPRGNTLGRGTTITLVLKEEASD 189
Query: 49 -----------------------LLVEKEREKELSEDEEEEKKEEEKEEDKTPKLEDEDY 85
+ K E +EEE KEE+++ D +E+E+
Sbjct: 190 YLELDTIKNLVKKYSQFINFPIYVWSSKTETVEEPMEEEEAAKEEKEDSDDEAAVEEEEE 249
Query: 86 VAR--MKENQKQIY 97
+ K+ +K ++
Sbjct: 250 EKKPKTKKVEKTVW 263
>3t0h_A Heat shock protein HSP 90-alpha; chaperone, ATPase; 1.20A {Homo
sapiens} PDB: 3r4m_A 3t0z_A* 3t10_A* 3t1k_A* 3t2s_A*
1uyl_A 1uy7_A* 1uy8_A* 1uy9_A* 1uyc_A* 1uyd_A* 1uye_A*
1uyf_A* 1uyg_A* 1uyh_A* 1uyk_A* 1uy6_A 2cdd_A* 2uwd_A*
2vci_A* ...
Length = 228
Score = 97.2 bits (243), Expect = 5e-24
Identities = 47/100 (47%), Positives = 56/100 (56%), Gaps = 37/100 (37%)
Query: 3 GFYSAYLVADKVTVTSKHNDDEQYIWESSAGGSFTIKPDNSQPLGR-------------- 48
GFYSAYLVA+KVTV +KHNDDEQY WESSAGGSFT++ D +P+GR
Sbjct: 129 GFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSFTVRTDTGEPMGRGTKVILHLKEDQTE 188
Query: 49 -----------------------LLVEKEREKELSEDEEE 65
L VEKER+KE+S+DE E
Sbjct: 189 YLEERRIKEIVKKHSQFIGYPITLFVEKERDKEVSDDEAE 228
>1yc1_A HSP 86, heat shock protein HSP 90-alpha; cell-cycle, cancer, drug
design, cell cycle; HET: 4BC; 1.70A {Homo sapiens} SCOP:
d.122.1.1 PDB: 1yc3_A* 1yc4_A*
Length = 264
Score = 98.1 bits (245), Expect = 5e-24
Identities = 47/100 (47%), Positives = 56/100 (56%), Gaps = 37/100 (37%)
Query: 3 GFYSAYLVADKVTVTSKHNDDEQYIWESSAGGSFTIKPDNSQPLGR-------------- 48
GFYSAYLVA+KVTV +KHNDDEQY WESSAGGSFT++ D +P+GR
Sbjct: 165 GFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSFTVRTDTGEPMGRGTKVILHLKEDQTE 224
Query: 49 -----------------------LLVEKEREKELSEDEEE 65
L VEKER+KE+S+DE E
Sbjct: 225 YLEERRIKEIVKKHSQFIGYPITLFVEKERDKEVSDDEAE 264
>3o0i_A HSP90AA1 protein; HSP90 heat-shock proteins, chaperone-inhibitor
complex; HET: P54; 1.47A {Homo sapiens} PDB: 2fwz_A*
2fwy_A* 2h55_A*
Length = 256
Score = 96.9 bits (242), Expect = 1e-23
Identities = 47/100 (47%), Positives = 56/100 (56%), Gaps = 37/100 (37%)
Query: 3 GFYSAYLVADKVTVTSKHNDDEQYIWESSAGGSFTIKPDNSQPLGR-------------- 48
GFYSAYLVA+KVTV +KHNDDEQY WESSAGGSFT++ D +P+GR
Sbjct: 157 GFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSFTVRTDTGEPMGRGTKVILHLKEDQTE 216
Query: 49 -----------------------LLVEKEREKELSEDEEE 65
L VEKER+KE+S+DE E
Sbjct: 217 YLEERRIKEIVKKHSQFIGYPITLFVEKERDKEVSDDEAE 256
>3nmq_A Heat shock protein HSP 90-beta; ATPase, chaperone-chaperone
inhibitor complex; HET: 7PP; 2.20A {Homo sapiens}
Length = 239
Score = 95.7 bits (239), Expect = 2e-23
Identities = 43/98 (43%), Positives = 56/98 (57%), Gaps = 26/98 (26%)
Query: 3 GFYSAYLVADKVTVTSKHNDDEQYIWESSAGGSFTIKPDNSQPLGR----LLVEKEREKE 58
GFYSAYLVA+KV V +KHNDDEQY WESSAGGSFT++ D+ +P+GR +L KE + E
Sbjct: 136 GFYSAYLVAEKVVVITKHNDDEQYAWESSAGGSFTVRADHGEPIGRGTKVILHLKEDQTE 195
Query: 59 LSED----------------------EEEEKKEEEKEE 74
E+ E+E +K E +
Sbjct: 196 YLEERRVKEVVKKHSQFIGYPITLYLEKEREKGEFNSK 233
>3peh_A Endoplasmin homolog; structural genomics, structural genomics
consortium, SGC, HE protein, chaperone, ATP binding;
HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A*
Length = 281
Score = 95.7 bits (239), Expect = 4e-23
Identities = 34/129 (26%), Positives = 46/129 (35%), Gaps = 40/129 (31%)
Query: 3 GFYSAYLVADKVTVTSKHNDDEQYIWESSAGGSFTIKPDNS-QPLGR------------- 48
GFYSA+LVADKV V +K+NDDEQYIWES+A FTI D L R
Sbjct: 144 GFYSAFLVADKVIVYTKNNDDEQYIWESTADAKFTIYKDPRGATLKRGTRISLHLKEDAT 203
Query: 49 ------------------------LLVEKEREKELS--EDEEEEKKEEEKEEDKTPKLED 82
LL E +E+ ++ +
Sbjct: 204 NLLNDKKLMDLISKYSQFIQFPIYLLHENVYTEEVLADIAKDMVNDPNYDSVKVEETDDP 263
Query: 83 EDYVARMKE 91
+++
Sbjct: 264 NKKTRTVEK 272
>2gqp_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, ligand, NECA,
NPCA, adenosine; HET: PA7 PG4 1PE; 1.50A {Canis lupus
familiaris} SCOP: d.122.1.1 PDB: 1tc0_A* 1tbw_A* 1u0z_A*
1u2o_A* 1ysz_A* 1yt0_A* 1yt1_A* 2exl_A* 2fyp_A* 2gfd_A*
1tc6_A* 2h8m_A* 2hch_A* 2hg1_A* 3o2f_A* 2esa_A*
Length = 236
Score = 94.5 bits (236), Expect = 6e-23
Identities = 32/101 (31%), Positives = 41/101 (40%), Gaps = 26/101 (25%)
Query: 3 GFYSAYLVADKVTVTSKHNDDEQYIWESSAGGSFTIKPDNSQPLGR----LLVEKEREKE 58
GFYSA+LVADKV VTSKHN+D Q+IWES + I LGR LV KE +
Sbjct: 134 GFYSAFLVADKVIVTSKHNNDTQHIWESDSNEFSVIADPRGNTLGRGTTITLVLKEEASD 193
Query: 59 LSED----------------------EEEEKKEEEKEEDKT 77
E + + + +
Sbjct: 194 YLELDTIKNLVKKYSQFINFPIYVWSSKTGGGGKTVWDWEL 234
>2wer_A ATP-dependent molecular chaperone HSP82; ATPase, ATP-binding,
phosphoprotein, stress respo nucleotide-binding; HET:
RDC; 1.60A {Saccharomyces cerevisiae} PDB: 2weq_A*
2wep_A* 1zwh_A* 1zw9_A* 2fxs_A* 3c11_A* 3c0e_A* 2yge_A*
2ygf_A* 2akp_A
Length = 220
Score = 91.0 bits (227), Expect = 6e-22
Identities = 35/65 (53%), Positives = 44/65 (67%), Gaps = 5/65 (7%)
Query: 3 GFYSAYLVADKVTVTSKHNDDEQYIWESSAGGSFTIKPDNS-QPLGR----LLVEKEREK 57
GFYS +LVAD+V V SK NDDEQYIWES+AGGSFT+ D + +GR L K+ +
Sbjct: 123 GFYSLFLVADRVQVISKSNDDEQYIWESNAGGSFTVTLDEVNERIGRGTILRLFLKDDQL 182
Query: 58 ELSED 62
E E+
Sbjct: 183 EYLEE 187
>2ior_A Chaperone protein HTPG; heat shock protein, HSP90; HET: ADP; 1.65A
{Escherichia coli}
Length = 235
Score = 80.3 bits (199), Expect = 8e-18
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 3 GFYSAYLVADKVTVTSK---HNDDEQYIWESSAGGSFTIKPDNSQPLG 47
GFYSA++VADKVTV ++ + WES+ G +T+ + G
Sbjct: 146 GFYSAFIVADKVTVRTRAAGEKPENGVFWESAGEGEYTVADITKEDRG 193
>3ied_A Heat shock protein; HSP90, chaperone, structural genomics,
structura genomics consortium, SGC, stress response;
HET: AN2; 2.01A {Plasmodium falciparum}
Length = 272
Score = 77.7 bits (191), Expect = 1e-16
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 11/70 (15%)
Query: 3 GFYSAYLVADKVTVTSKHNDDEQYIWESSAGGSFTIKP------DNSQPLGR----LLVE 52
GFYS++LV+++V V +K +D+ Y W S GSF++ + G +L
Sbjct: 181 GFYSSFLVSNRVEVYTK-KEDQIYRWSSDLKGSFSVNEIKKYDQEYDDIKGSGTKIILHL 239
Query: 53 KEREKELSED 62
KE E ED
Sbjct: 240 KEECDEYLED 249
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 43.7 bits (102), Expect = 7e-05
Identities = 49/362 (13%), Positives = 100/362 (27%), Gaps = 107/362 (29%)
Query: 38 IKPDNSQPLGRL---LVEKERE--KELSEDEEEEK----KEEEKEEDKTPKLEDEDY--- 85
+ D RL L+ K+ E ++ E+ K E + P + Y
Sbjct: 56 MSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQ 115
Query: 86 ---------------VARMKE---------NQKQIYYIT-----GETKD----QVANSSF 112
V+R++ + + G K V S
Sbjct: 116 RDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYK 175
Query: 113 VERVKKRGFEVIYMT---EPIDEYVVQQLK------DYDGKTLVSVTKEGLELPEDEEEK 163
V+ K F++ ++ E V++ L+ D + + + + +
Sbjct: 176 VQC--KMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE 233
Query: 164 KKREEDKVKFENLCKVMKDILDKKVEKVIVSNRLVDSPCCI-VTSQYGWTANMERIMKAQ 222
+R +EN V+ ++ + K + C I +T+
Sbjct: 234 LRRLLKSKPYENCLLVLLNVQNAKAWNA------FNLSCKILLTT--------------- 272
Query: 223 ALRDTSTMGYMAAK--KHLEINPDHSIVETLRQKAD--ADKNDKAVKDLVNLLFETSLLS 278
R +++A H+ ++ HS+ T + D +DL + T+
Sbjct: 273 --RFKQVTDFLSAATTTHISLD-HHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRR 329
Query: 279 SGFTLEEPQVHAARI-----------HRMIKLGLGIEDEDEVATG--------DDVKAGD 319
E + A +I+ L + + E
Sbjct: 330 LSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH--- 386
Query: 320 IP 321
IP
Sbjct: 387 IP 388
Score = 36.0 bits (82), Expect = 0.016
Identities = 37/280 (13%), Positives = 82/280 (29%), Gaps = 85/280 (30%)
Query: 22 DDEQYIWESSAGGSFTIKPDNSQPLGRLLVEKEREKELSEDEEEEKKEEEKEEDKTPKL- 80
+ + + A +F + ++L+ R K++++ + + L
Sbjct: 251 LN---VQNAKAWNAFNLS-------CKILL-TTRFKQVTDFLSAATTTHISLDHHSMTLT 299
Query: 81 --EDEDYVARMKENQKQIYYITGETKD---QVAN------SSFVERVKKRGFEVIYMTEP 129
E + + + Y+ +D +V S E ++
Sbjct: 300 PDEVKSLLLK---------YLDCRPQDLPREVLTTNPRRLSIIAESIRD-------GLAT 343
Query: 130 IDEYVVQQLKDYDGKTLVSVTKEGLELPEDEEEKKKREEDKVKFENLCKVMKDILDKKVE 189
D + K + L ++ + L + E E +K F+ L +
Sbjct: 344 WDNW-----KHVNCDKLTTIIESSLNVLEPAEYRK-------MFDRLS-----VFPPSAH 386
Query: 190 KVIVSNRLVDSPCCIVTSQYGWTA----NMERIM-----KAQALRD--TSTMG----YMA 234
I + L ++ W ++ ++ + + ST+ Y+
Sbjct: 387 --IPTILL-----SLI-----WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLE 434
Query: 235 AKKHLEINPD-H-SIVETLRQKADADKNDKAVKDLVNLLF 272
K LE H SIV+ D +D L +
Sbjct: 435 LKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFY 474
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 39.4 bits (91), Expect = 6e-04
Identities = 11/46 (23%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Query: 53 KEREKELSE-DEEEEKKEEEKEEDKTPKLED--EDYVARMKENQKQ 95
+E+ K L E D + E+E E LE+ + ++++N+
Sbjct: 92 EEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKIN 137
Score = 31.7 bits (71), Expect = 0.22
Identities = 10/41 (24%), Positives = 19/41 (46%)
Query: 159 DEEEKKKREEDKVKFENLCKVMKDILDKKVEKVIVSNRLVD 199
D K +E + K + + ++VEK ++NR+ D
Sbjct: 102 DAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIAD 142
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 36.2 bits (83), Expect = 0.018
Identities = 30/220 (13%), Positives = 66/220 (30%), Gaps = 48/220 (21%)
Query: 129 PIDEYVV-QQLKDYDGKTLVSVTKEGLELPEDEEEKKK------------REEDKVKFEN 175
P + + QL++ K L T+ D+E + K
Sbjct: 23 PTASFFIASQLQEQFNKILPEPTE---GFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQ 79
Query: 176 LCKVMKDILDKKVEKVIVSNRLVDSPCCIVTSQYGWTANMERIMKAQALRDTSTMGYMAA 235
+V+ L + E + + + + ++ + + + +++ Y+ A
Sbjct: 80 FDQVLNLCLT-EFENCYLEGNDIHA----LAAKLLQENDTTLVKTKELIKN-----YITA 129
Query: 236 KKHLEINPDHSIVETLRQKADADK------------NDKAVKDLVNLLFETS-------L 276
+ + D L + D ++L + L++T +
Sbjct: 130 RIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRD-LYQTYHVLVGDLI 188
Query: 277 LSSGFTLEEPQVHAARIHRMIKLGLGIED--EDEVATGDD 314
S TL E ++ GL I + E+ T D
Sbjct: 189 KFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDK 228
>1iru_C 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_B* 3une_B 3unf_B* 3unh_B
Length = 261
Score = 33.5 bits (77), Expect = 0.063
Identities = 16/47 (34%), Positives = 31/47 (65%)
Query: 37 TIKPDNSQPLGRLLVEKEREKELSEDEEEEKKEEEKEEDKTPKLEDE 83
T+ +N + + R+L +KE E+ + + EEEE K E ++++K K +D+
Sbjct: 215 TLTRENGKTVIRVLKQKEVEQLIKKHEEEEAKAEREKKEKEQKEKDK 261
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 33.5 bits (77), Expect = 0.11
Identities = 29/143 (20%), Positives = 51/143 (35%), Gaps = 7/143 (4%)
Query: 54 EREKELSEDEEEEKKEEEKEEDKTPKLEDEDYVARMKENQKQIYY-----ITGETKDQVA 108
E+ KE E+ E +T KL + RM E + + + E
Sbjct: 939 EQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRK 998
Query: 109 NSSFVERVKKRGFEVIYMTEPIDEYVVQQLKDYDGKTLVSVTKEGLELPEDEEEKKKREE 168
+ KK E + E +V +LK+ TL+ KE L ++ K+ E
Sbjct: 999 ELHQTQTEKKTIEEWADKYKHETEQLVSELKEQ--NTLLKTEKEELNRRIHDQAKEITET 1056
Query: 169 DKVKFENLCKVMKDILDKKVEKV 191
+ K K ++ L+ + +
Sbjct: 1057 MEKKLVEETKQLELDLNDERLRY 1079
Score = 28.2 bits (63), Expect = 4.4
Identities = 19/126 (15%), Positives = 41/126 (32%), Gaps = 8/126 (6%)
Query: 49 LLVEKEREKELSEDEEEEKKEEEKEEDKTPKLEDEDYVARMKENQKQIYYITGETKDQVA 108
L + E E + E + E+E + + +K++ + Q
Sbjct: 954 LEITYSTETEKLRSDVERLRMSEEEAKNATN-RVLSLQEEIAKLRKEL------HQTQTE 1006
Query: 109 NSSFVERVKKRGFEVIYMTEPIDEYVVQQLKDYDGKTLVSVTKEGLELPEDEEEKKKREE 168
+ E K E + + E LK + + + E+ E E+K E
Sbjct: 1007 KKTIEEWADKYKHETEQLVSELKE-QNTLLKTEKEELNRRIHDQAKEITETMEKKLVEET 1065
Query: 169 DKVKFE 174
+++ +
Sbjct: 1066 KQLELD 1071
Score = 28.2 bits (63), Expect = 4.7
Identities = 24/143 (16%), Positives = 56/143 (39%), Gaps = 9/143 (6%)
Query: 52 EKEREKELSEDEEEEKKEEEKEEDKTPKLEDEDYVARMKENQKQIYYITGETKDQVANSS 111
++EL + + E + E ++ LE++ + + Q++I E K + +
Sbjct: 899 RMMAKRELKKLKIEARSVERYKKLHI-GLENK-----IMQLQRKIDEQNKEYKSLLEKMN 952
Query: 112 FVERVKKRGFEVIYMTEPIDEYVVQQLKDYDGKTLV---SVTKEGLELPEDEEEKKKREE 168
+E E + ++ K+ + L + K EL + + EKK EE
Sbjct: 953 NLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEE 1012
Query: 169 DKVKFENLCKVMKDILDKKVEKV 191
K+++ + + L ++ +
Sbjct: 1013 WADKYKHETEQLVSELKEQNTLL 1035
Score = 28.2 bits (63), Expect = 5.0
Identities = 21/143 (14%), Positives = 56/143 (39%), Gaps = 7/143 (4%)
Query: 50 LVEKEREKELSEDEEEEKKEEEKEEDKTPKLEDEDYVARMKENQKQIYYITGETKD-QVA 108
L K + + DE+ ++ + E+ ++ +++ + +++ E K+
Sbjct: 926 LENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNR 985
Query: 109 NSSFVERVKKRGFEVIYMTEPIDEYVVQQLKDYDGKTLVSVTKEGLELPEDEEE-KKKRE 167
S E + K E+ + ++++ K + EL E K ++E
Sbjct: 986 VLSLQEEIAKLRKELHQTQT-----EKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKE 1040
Query: 168 EDKVKFENLCKVMKDILDKKVEK 190
E + + K + + ++KK+ +
Sbjct: 1041 ELNRRIHDQAKEITETMEKKLVE 1063
>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase,
S-adenosyl-L-methionine, RNA metabolism, mRNA
processing, methyltransferase, poxvirus; HET: SAH; 2.70A
{Vaccinia virus}
Length = 302
Score = 32.1 bits (72), Expect = 0.20
Identities = 14/111 (12%), Positives = 41/111 (36%), Gaps = 7/111 (6%)
Query: 82 DEDYVARMKENQKQIYYITGETKDQVANSSFVERVKKRGFEVIYMTEPIDEYVVQQLKDY 141
D D ++++ + + I + + + + + + + M+ P+ EY++++
Sbjct: 171 DGDKLSKLTDKKTFIIHKNLPSSENYMSVEKIADDRIVVYNPSTMSTPMTEYIIKK---- 226
Query: 142 DGKTLVSVTKE-GLELPEDEEEKKKREEDKVKFENLCKVMKDILDKKVEKV 191
+V V E G L ++ + E K + + ++
Sbjct: 227 --NDIVRVFNEYGFVLVDNVDFATIIERSKKFINGASTMEDRPSTRNFFEL 275
>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, unknown function;
HET: MSE; 1.83A {Planctomyces limnophilus}
Length = 259
Score = 30.3 bits (67), Expect = 0.82
Identities = 8/44 (18%), Positives = 15/44 (34%)
Query: 99 ITGETKDQVANSSFVERVKKRGFEVIYMTEPIDEYVVQQLKDYD 142
G+T + A + +E Y+ + V + L D
Sbjct: 9 YCGDTSLETAAGYLAGLMTSWQWEFDYIPSHVGLDVGELLAKQD 52
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 30.6 bits (69), Expect = 0.97
Identities = 26/134 (19%), Positives = 54/134 (40%), Gaps = 18/134 (13%)
Query: 53 KEREKELSEDEEEEKKEEEKEEDKTPKLEDE--DYVARMKENQKQIYYITGETKDQVANS 110
+ EL ++E+K ++ E KLE E D ++ E Q QI +
Sbjct: 1038 ESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQI-------------A 1084
Query: 111 SFVERVKKRGFEVIYMTEPIDEYVVQQLKDYDGKTLVSVTKEGLELPED-EEEKKKREED 169
++ K+ E+ +++ K+ K + + +L ED E EK R +
Sbjct: 1085 ELKAQLAKKEEELQAALARLEDE--TSQKNNALKKIRELESHISDLQEDLESEKAARNKA 1142
Query: 170 KVKFENLCKVMKDI 183
+ + +L + ++ +
Sbjct: 1143 EKQKRDLSEELEAL 1156
Score = 28.3 bits (63), Expect = 4.4
Identities = 20/123 (16%), Positives = 52/123 (42%), Gaps = 3/123 (2%)
Query: 53 KEREKELSEDEEEEKKEEEKEEDKTPKLED-EDYVARMKENQKQIYYITGETKDQVANSS 111
+E E+ + + E+KK +++ D +LE+ E +++ + + +D +
Sbjct: 937 EEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIME 996
Query: 112 FVERVKKRGFEVIYMTEPIDEYVVQQLKDYDGKTLVSVTKEGLELPEDEEEKKKREEDKV 171
++ K E + E + + ++ + ++ K E E E + ++E+K
Sbjct: 997 --DQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKS 1054
Query: 172 KFE 174
+ E
Sbjct: 1055 RQE 1057
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral
twinning, leucine-rich repeat protein, LRR, merohedral
twinning; 2.2A {Schizosaccharomyces pombe} SCOP:
c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Length = 386
Score = 28.9 bits (65), Expect = 2.7
Identities = 11/35 (31%), Positives = 24/35 (68%)
Query: 50 LVEKEREKELSEDEEEEKKEEEKEEDKTPKLEDED 84
L E + +EL+++EEE+++EE + + P+ +E+
Sbjct: 337 LDELDDMEELTDEEEEDEEEEAESQSPEPETSEEE 371
>2yx0_A Radical SAM enzyme; predicted tRNA modification enzyme, metal
binding protein, structural genomics, NPPSFA; 2.21A
{Pyrococcus horikoshii}
Length = 342
Score = 28.7 bits (63), Expect = 2.9
Identities = 22/153 (14%), Positives = 46/153 (30%), Gaps = 3/153 (1%)
Query: 41 DNSQPLGRLLVEKEREKELSEDEEEEKKEEEKEEDKTPKLEDEDYVARMKENQKQIYYIT 100
LG L + + +E + + + K D+ ++
Sbjct: 91 PMENFLGTELPQPWDDPAFIVEESIKAQRKLLIGYKGNPKVDKKKFEEAWNPTHAAISLS 150
Query: 101 GETKDQVANSSFVERVKKRGFEVIYMTEPIDEYVVQQLKDYDGKTLVSVTKEGLELPEDE 160
GE VE KRGF +T ++++ D L + + P+ E
Sbjct: 151 GEPMLYPYMGDLVEEFHKRGFTTFIVTNGTIPERLEEMIKEDK--LPTQLYVSITAPDIE 208
Query: 161 EEKK-KREEDKVKFENLCKVMKDILDKKVEKVI 192
+E + + ++ + D V+
Sbjct: 209 TYNSVNIPMIPDGWERILRFLELMRDLPTRTVV 241
>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase,
phosphoglycerate dehydrogenase deficiency, S metabolism,
2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo
sapiens}
Length = 335
Score = 28.7 bits (65), Expect = 3.1
Identities = 9/39 (23%), Positives = 20/39 (51%)
Query: 113 VERVKKRGFEVIYMTEPIDEYVVQQLKDYDGKTLVSVTK 151
+ ++ G +V+ E ++ +L+D +G + S TK
Sbjct: 40 RKILQDGGLQVVEKQNLSKEELIAELQDCEGLIVRSATK 78
>1rz4_A Eukaryotic translation initiation factor 3 subuni; heat analogous
motif, winged-helix, biosynthetic protein; 2.10A {Homo
sapiens} SCOP: a.4.5.53 a.118.1.18
Length = 226
Score = 28.1 bits (62), Expect = 3.2
Identities = 18/84 (21%), Positives = 37/84 (44%), Gaps = 12/84 (14%)
Query: 110 SSFVERVKKRGFEVIYMT-EPIDEYVVQQ-LKDYDGKTLV--------SVTKEGLELP-- 157
+ F + V+K V+ +T + ID +++ + L D L S + G
Sbjct: 132 TGFEDSVRKFICHVVGITYQHIDRWLLAEMLGDLSDSQLKVWMSKYGWSADESGQIFICS 191
Query: 158 EDEEEKKKREEDKVKFENLCKVMK 181
++E K K +K+ F+++ +M
Sbjct: 192 QEESIKPKNIVEKIDFDSVSSIMA 215
>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}
Length = 313
Score = 28.3 bits (64), Expect = 3.2
Identities = 11/39 (28%), Positives = 23/39 (58%)
Query: 113 VERVKKRGFEVIYMTEPIDEYVVQQLKDYDGKTLVSVTK 151
++ ++++G +V YM E E ++ + +YD + S TK
Sbjct: 19 IKTLREKGIQVDYMPEISKEELLNIIGNYDIIVVRSRTK 57
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics,
PSI, protein structure INI southeast collaboratory for
structural genomics; 1.51A {Pyrococcus furiosus} SCOP:
d.15.3.1
Length = 98
Score = 26.9 bits (60), Expect = 3.2
Identities = 10/52 (19%), Positives = 20/52 (38%), Gaps = 5/52 (9%)
Query: 264 VKDLVNLLFE-----TSLLSSGFTLEEPQVHAARIHRMIKLGLGIEDEDEVA 310
V+DL+ + + + E+ V+ A R + ++D D V
Sbjct: 39 VRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSWDEELKDGDVVG 90
>1wwk_A Phosphoglycerate dehydrogenase; riken structural
genomics/proteomics initiative, RSGI, structural
genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus
horikoshii}
Length = 307
Score = 28.3 bits (64), Expect = 3.7
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 113 VERVKKRGFEVIYMTEPIDEYVVQQLKDYDGKTLVSVTK 151
++ +K G EVIY P ++ +V+ +KD + + S K
Sbjct: 17 IQVLKDAGLEVIYEEYPDEDRLVELVKDVEAIIVRSKPK 55
>2bw3_A Transposase; DNA recombination, transposition; 2.0A {Musca
domestica} SCOP: a.270.1.1 c.55.3.12 PDB: 2bw3_B
Length = 534
Score = 28.6 bits (62), Expect = 3.8
Identities = 19/119 (15%), Positives = 42/119 (35%)
Query: 66 EKKEEEKEEDKTPKLEDEDYVARMKENQKQIYYITGETKDQVANSSFVERVKKRGFEVIY 125
++K + +E K+ED + + RM + ++ NS + K +
Sbjct: 369 QEKVAQIKEFCLSKMEDLELINRMSSFNELSATQLNQSDSNSHNSIDLTSHSKDISTTSF 428
Query: 126 MTEPIDEYVVQQLKDYDGKTLVSVTKEGLELPEDEEEKKKREEDKVKFENLCKVMKDIL 184
+ + ++ KE + L ED + + + K+ L K+ +L
Sbjct: 429 FFPQLTQNNSREPPVCPSDEFEFYRKEIVILSEDFKVMEWWNLNSKKYPKLSKLALSLL 487
>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate
dehydrogenase, D-lactate dehydrogenas oxidoreductase;
HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4
c.23.12.1
Length = 333
Score = 28.3 bits (64), Expect = 3.8
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 111 SFVERVKKRGFEVIYMTEPIDEYVVQQLKDYDG 143
F + K G + Y TE +DE V+ K +DG
Sbjct: 15 YFKQWAKDTGNTLEYHTEFLDENTVEWAKGFDG 47
>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase,
protease inhibitor, thiol protease inhibitor, UBL
conjugation pathway; HET: MSE; 2.01A {Homo sapiens}
Length = 323
Score = 28.1 bits (62), Expect = 4.8
Identities = 13/55 (23%), Positives = 22/55 (40%)
Query: 57 KELSEDEEEEKKEEEKEEDKTPKLEDEDYVARMKENQKQIYYITGETKDQVANSS 111
+E E +K + + K +E YVA MK+ Q + + E +D
Sbjct: 3 QEKKLGEYSKKAAMKPKPLSVLKSLEEKYVAVMKKLQFDTFEMVSEDEDGKLGFK 57
>3pnn_A Conserved domain protein; structural genomics, PSI-biology, protein
structure initiati midwest center for structural
genomics, MCSG; HET: MSE GOL; 1.90A {Porphyromonas
gingivalis}
Length = 303
Score = 27.8 bits (61), Expect = 4.9
Identities = 12/69 (17%), Positives = 26/69 (37%), Gaps = 1/69 (1%)
Query: 117 KKRGFEVIYMTEPIDEYVVQQLKDYDGKTLVSVTKEGLELPEDEEEKKKREEDKVKFENL 176
K+ + + I +Y V LV V + E E E+ + E ++ E +
Sbjct: 22 LKQLDGIGPGGDTIMDYSVYDAIRAGFGRLVFVIRHSFE-KEFREKILTKYEGRIPVELV 80
Query: 177 CKVMKDILD 185
+ + + +
Sbjct: 81 FQELDRLPE 89
>3o4z_A Telomere length regulation protein TEL2; heat like helical repeats,
protein binding; 3.10A {Saccharomyces cerevisiae}
Length = 647
Score = 27.8 bits (61), Expect = 5.4
Identities = 5/61 (8%), Positives = 21/61 (34%)
Query: 39 KPDNSQPLGRLLVEKEREKELSEDEEEEKKEEEKEEDKTPKLEDEDYVARMKENQKQIYY 98
++ + + L + + + + + + D+ + +E K+I +
Sbjct: 336 NEREARERAMFIAKLLSGGHLKYESDFKINIPNVKFESNSDDKIIDFQSLKREIVKRIVF 395
Query: 99 I 99
+
Sbjct: 396 L 396
>3s9j_A Member of DUF4221 family; 6-bladed beta-propeller, structural
genomics, joint center F structural genomics, JCSG; HET:
MSE; 1.75A {Bacteroides vulgatus}
Length = 369
Score = 27.5 bits (60), Expect = 6.6
Identities = 35/177 (19%), Positives = 54/177 (30%), Gaps = 32/177 (18%)
Query: 2 NGFYSAYLVADKVTVTSKHNDDEQYIWESSAGGSFTIKPDNSQPLGRLLVEKEREKELSE 61
+ + D + VT Y +S S K NS E
Sbjct: 210 SRLVCGFFGYDSLMVTDDLKHIRWYNAKSRYLKSMKPKLGNSM----------------E 253
Query: 62 DEEEEKKEEEKEEDKTPKLEDEDYVARMKENQKQIYY-ITGETKDQVANSSFVERVKKRG 120
K E+ Y M + + +YY N S E K +
Sbjct: 254 GINAIIKL----------NENPRYWHIMYDKYRNVYYRFAEMPYKLAPNESPYETPKGKE 303
Query: 121 FEVIYMTE---PIDEYVVQQLKDYDGKTLVSVTKEGLELPEDEEEKKKREEDKVKFE 174
F VI + I E K + + V +EGL + E+ E + +E+K+ F
Sbjct: 304 FSVIVLNADFEIIGETKFPGKKYFYKMSFV--GREGLYISENNLENPQFDENKLVFT 358
>1jnd_A Imaginal DISC growth factor-2; IDGF, chitinase, insulin recep
heparin, hormone-growth factor complex; HET: NAG BMA
MAN; 1.30A {Drosophila melanogaster} SCOP: c.1.8.5
d.26.3.1 PDB: 1jne_A*
Length = 420
Score = 27.5 bits (61), Expect = 7.3
Identities = 8/59 (13%), Positives = 18/59 (30%), Gaps = 1/59 (1%)
Query: 130 ID-EYVVQQLKDYDGKTLVSVTKEGLELPEDEEEKKKREEDKVKFENLCKVMKDILDKK 187
+ ++ + + G ++ D K +F L + +KD L
Sbjct: 129 LAYQFPKNKPRKVHGDLGLAWKSIKKLFTGDFIVDPHAALHKEQFTALVRDVKDSLRAD 187
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 427
Score = 27.4 bits (60), Expect = 7.6
Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 7/71 (9%)
Query: 53 KEREKELSEDEEEEKKEEEKE----EDKTPKLEDEDYVARMKENQKQIYYITGETKDQVA 108
KE EKEL E + KK + E EDK L+DE + +K + Q
Sbjct: 358 KEAEKELHEKFDRLKKLHQDEKKKLEDKKKSLDDE---VNAFKQRKTAAELLQSQGSQAG 414
Query: 109 NSSFVERVKKR 119
S ++R K++
Sbjct: 415 GSQTLKRDKEK 425
>3q13_A Spondin-1; FS-domain, membrane targeting, AXON guidance, C2-
derivative, glycosylated, extracellular matrix, cell
adhesi; HET: NAG BMA; 1.95A {Homo sapiens}
Length = 258
Score = 27.1 bits (59), Expect = 8.4
Identities = 3/36 (8%), Positives = 14/36 (38%)
Query: 44 QPLGRLLVEKEREKELSEDEEEEKKEEEKEEDKTPK 79
+ R+++E+ K + + ++ + +
Sbjct: 214 TQVARVVIERIARKGEQCNIVPDNVDDIVADLAPEE 249
>3bbn_I Ribosomal protein S9; small ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea}
Length = 197
Score = 26.6 bits (59), Expect = 9.2
Identities = 9/57 (15%), Positives = 11/57 (19%)
Query: 52 EKEREKELSEDEEEEKKEEEKEEDKTPKLEDEDYVARMKENQKQIYYITGETKDQVA 108
E +T LE Q TG K +A
Sbjct: 27 LSNPAVVKPLVITATSATAPVEVAETADLEKFVKSRLPGGFAAQTVIGTGRRKCAIA 83
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.309 0.129 0.350
Gapped
Lambda K H
0.267 0.0439 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,101,106
Number of extensions: 319672
Number of successful extensions: 1595
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1402
Number of HSP's successfully gapped: 191
Length of query: 334
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 240
Effective length of database: 4,077,219
Effective search space: 978532560
Effective search space used: 978532560
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 57 (26.5 bits)