RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4716
(334 letters)
>d1sf8a_ d.271.1.1 (A:) Chaperone protein HtpG {Escherichia coli
[TaxId: 562]}
Length = 115
Score = 118 bits (296), Expect = 1e-33
Identities = 29/123 (23%), Positives = 61/123 (49%), Gaps = 10/123 (8%)
Query: 175 NLCKVMKDILDKKVEKVIVSNRLVDSPCCIVTSQYGWTANMERIMKAQALRDTSTMGYMA 234
+ +K +L ++V+ V +++RL D+P + T + M ++ A
Sbjct: 1 SFIDRVKALLGERVKDVRLTHRLTDTPAIVSTDADEMSTQMAKLFAAAG------QKVPE 54
Query: 235 AKKHLEINPDHSIVETLRQKADADKNDKAVKDLVNLLFETSLLSSGFTLEEPQVHAARIH 294
K E+NPDH +V ++A +++ + V LL + +LL+ TLE+P + R++
Sbjct: 55 VKYIFELNPDHVLV----KRAADTEDEAKFSEWVELLLDQALLAERGTLEDPNLFIRRMN 110
Query: 295 RMI 297
+++
Sbjct: 111 QLL 113
>d1usua_ d.14.1.8 (A:) Heat shock protein hsp82 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 256
Score = 97.0 bits (241), Expect = 5e-24
Identities = 38/70 (54%), Positives = 53/70 (75%)
Query: 83 EDYVARMKENQKQIYYITGETKDQVANSSFVERVKKRGFEVIYMTEPIDEYVVQQLKDYD 142
DYV RM E+QK IYYITGE+ V S F++ +K + FEV+++T+PIDEY QLK+++
Sbjct: 187 TDYVTRMPEHQKNIYYITGESLKSVEKSPFLDALKAKNFEVLFLTDPIDEYAFTQLKEFE 246
Query: 143 GKTLVSVTKE 152
GKTLV +TK+
Sbjct: 247 GKTLVDITKD 256
>d2gqpa1 d.122.1.1 (A:74-337) HSP90 {Dog (Canis familiaris) [TaxId:
9615]}
Length = 227
Score = 33.1 bits (75), Expect = 0.032
Identities = 32/65 (49%), Positives = 38/65 (58%), Gaps = 4/65 (6%)
Query: 3 GFYSAYLVADKVTVTSKHNDDEQYIWESSAGGSFTIKPDNSQPLGR----LLVEKEREKE 58
GFYSA+LVADKV VTSKHN+D Q+IWES + I LGR LV KE +
Sbjct: 125 GFYSAFLVADKVIVTSKHNNDTQHIWESDSNEFSVIADPRGNTLGRGTTITLVLKEEASD 184
Query: 59 LSEDE 63
E +
Sbjct: 185 YLELD 189
>d1iruc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 250
Score = 30.0 bits (67), Expect = 0.36
Identities = 13/37 (35%), Positives = 24/37 (64%)
Query: 37 TIKPDNSQPLGRLLVEKEREKELSEDEEEEKKEEEKE 73
T+ +N + + R+L +KE E+ + + EEEE K E ++
Sbjct: 214 TLTRENGKTVIRVLKQKEVEQLIKKHEEEEAKAEREK 250
>d1dxya2 c.23.12.1 (A:1-100,A:300-330) D-2-hydroxyisocaproate
dehydrogenase {Lactobacillus casei [TaxId: 1582]}
Length = 131
Score = 28.5 bits (63), Expect = 0.55
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 111 SFVERVKKRGFEVIYMTEPIDEYVVQQLKDYDG 143
F + K G + Y TE +DE V+ K +DG
Sbjct: 15 YFKQWAKDTGNTLEYHTEFLDENTVEWAKGFDG 47
>d1rxxa_ d.126.1.4 (A:) Arginine deiminase {Pseudomonas aeruginosa
[TaxId: 287]}
Length = 412
Score = 28.6 bits (63), Expect = 1.1
Identities = 9/92 (9%), Positives = 30/92 (32%)
Query: 81 EDEDYVARMKENQKQIYYITGETKDQVANSSFVERVKKRGFEVIYMTEPIDEYVVQQLKD 140
+ D+V +M+E + + + + N ++ + R + + + L+
Sbjct: 49 DHFDFVTKMRERGIDVLEMHNLLTETIQNPEALKWILDRKITADSVGLGLTSELRSWLES 108
Query: 141 YDGKTLVSVTKEGLELPEDEEEKKKREEDKVK 172
+ + L G+ + + +
Sbjct: 109 LEPRKLAEYLIGGVAADDLPASEGANILKMYR 140
>d1rz4a1 a.4.5.53 (A:132-216) Eukaryotic translation initiation
factor 3 subunit 12, eIF3k, C-terminal domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 85
Score = 25.4 bits (56), Expect = 3.7
Identities = 6/26 (23%), Positives = 14/26 (53%)
Query: 156 LPEDEEEKKKREEDKVKFENLCKVMK 181
++E K K +K+ F+++ +M
Sbjct: 59 CSQEESIKPKNIVEKIDFDSVSSIMA 84
>d2j0td1 b.40.3.1 (D:1-124) TIMP-1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 124
Score = 25.7 bits (56), Expect = 5.2
Identities = 19/103 (18%), Positives = 31/103 (30%), Gaps = 20/103 (19%)
Query: 109 NSSFVERVKKRGFEVIYMTEPIDEYVVQQLKDYDGKTLVSVTKEGLEL--PEDEEEKKKR 166
NS V R K G + T Y ++ K Y G + + + P
Sbjct: 14 NSDLVIRAKFVGTPEVNQTTLYQRYEIKMTKMYKGFQALGDAADIRFVYTPAM------- 66
Query: 167 EEDKVKFENLCKVMKDILDKKVEKVI----VSNRLVDSPCCIV 205
E++C ++ E +I L + C V
Sbjct: 67 -------ESVCGYFHRSHNRSEEFLIAGKLQDGLLHITTCSFV 102
>d1jr2a_ c.113.1.1 (A:) Uroporphyrinogen III synthase (U3S, HemD)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 260
Score = 26.1 bits (56), Expect = 6.1
Identities = 7/53 (13%), Positives = 16/53 (30%), Gaps = 8/53 (15%)
Query: 99 ITGETKDQVANSSFVERVKKRGFEVIYM----TEPID----EYVVQQLKDYDG 143
+ +D ++ + G E + E + + +DY G
Sbjct: 6 LKDAKEDDCGQDPYIRELGLYGLEATLIPVLSFEFLSLPSFSEKLSHPEDYGG 58
>d1ofcx3 a.187.1.1 (X:697-798) HAND domain of the nucleosome
remodeling ATPase ISWI {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 102
Score = 25.2 bits (55), Expect = 6.4
Identities = 8/31 (25%), Positives = 18/31 (58%)
Query: 54 EREKELSEDEEEEKKEEEKEEDKTPKLEDED 84
+ EL D + ++EE+++ D+ L +E+
Sbjct: 59 PKNTELGSDATKVQREEQRKIDEAEPLTEEE 89
>d1k4ta3 e.15.1.1 (A:201-430) Eukaryotic DNA topoisomerase I,
N-terminal DNA-binding fragment {Human (Homo sapiens)
[TaxId: 9606]}
Length = 230
Score = 25.8 bits (57), Expect = 6.4
Identities = 8/25 (32%), Positives = 17/25 (68%)
Query: 52 EKEREKELSEDEEEEKKEEEKEEDK 76
+ E K++S++E+ + KEE ++ K
Sbjct: 112 QTEARKQMSKEEKLKIKEENEKLLK 136
>d1wj5a_ a.4.5.59 (A:) OB fold-containing protein 1, Obfc1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 120
Score = 24.8 bits (54), Expect = 7.7
Identities = 7/27 (25%), Positives = 15/27 (55%)
Query: 79 KLEDEDYVARMKENQKQIYYITGETKD 105
L+++ V + ++YY+T + KD
Sbjct: 86 LLQEKGLVFQRDSGSDKLYYVTTKDKD 112
>d1oisa_ e.15.1.1 (A:) Eukaryotic DNA topoisomerase I, N-terminal
DNA-binding fragment {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 223
Score = 25.4 bits (56), Expect = 8.7
Identities = 6/28 (21%), Positives = 20/28 (71%)
Query: 49 LLVEKEREKELSEDEEEEKKEEEKEEDK 76
++KE++K+L+ E+++ + E ++ ++
Sbjct: 101 FQLQKEQKKQLTSQEKKQIRLEREKFEE 128
>d1wcha_ c.45.1.2 (A:) Tyrosine-protein phosphatase, non-receptor
type 13 (PTPL1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 308
Score = 25.6 bits (55), Expect = 9.3
Identities = 28/182 (15%), Positives = 58/182 (31%), Gaps = 19/182 (10%)
Query: 53 KEREKELSEDEEEEKKEEEKEEDKTPKLEDEDYVARMKENQKQIYY--ITGETKDQVA-- 108
K + L ++ +E E + K D+ + + KEN+++ Y I +V
Sbjct: 29 KSVIRVLRGLLDQGIPSKELENLQELKPLDQCLIGQTKENRRKNRYKNILPYDATRVPLG 88
Query: 109 ------NSSFVE-RVKKRGFEVIYMTEPIDEYVV---QQLKDYDGKTLVSVTKEGLELPE 158
N+SF++ V K F I P+ V Q + + + +T+E
Sbjct: 89 DEGGYINASFIKIPVGKEEFVYIACQGPLPTTVGDFWQMIWEQKSTVIAMMTQEVEGEKI 148
Query: 159 DEEEKKKREEDKV-----KFENLCKVMKDILDKKVEKVIVSNRLVDSPCCIVTSQYGWTA 213
+ K + M+ + V + + + I +
Sbjct: 149 KCQRYWPNILGKTTMVSNRLRLALVRMQQLKGFVVRAMTLEDIQTREVRHISHLNFTAWP 208
Query: 214 NM 215
+
Sbjct: 209 DH 210
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.309 0.129 0.350
Gapped
Lambda K H
0.267 0.0566 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,216,795
Number of extensions: 59071
Number of successful extensions: 298
Number of sequences better than 10.0: 1
Number of HSP's gapped: 281
Number of HSP's successfully gapped: 55
Length of query: 334
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 248
Effective length of database: 1,226,816
Effective search space: 304250368
Effective search space used: 304250368
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 53 (24.6 bits)