BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4717
(90 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4BCA|A Chain A, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Tyr578phe Mutant
pdb|4BCA|B Chain B, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Tyr578phe Mutant
pdb|4BCA|C Chain C, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Tyr578phe Mutant
pdb|4BCA|D Chain D, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Tyr578phe Mutant
Length = 658
Score = 63.9 bits (154), Expect = 2e-11, Method: Composition-based stats.
Identities = 29/48 (60%), Positives = 37/48 (77%)
Query: 40 EDVEKVVQVAHDHNLVIIPFGGGTNVTGAVACPENELRTIISLDTSQM 87
+DV K+V +A +NL IIP GGGT+V+ + CP +E RTIISLDTSQM
Sbjct: 216 DDVVKIVNLACKYNLCIIPIGGGTSVSYGLMCPADETRTIISLDTSQM 263
>pdb|4BBY|A Chain A, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Wild-Type
pdb|4BBY|B Chain B, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Wild-Type
pdb|4BBY|C Chain C, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Wild-Type
pdb|4BBY|D Chain D, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Wild-Type
pdb|4BC9|A Chain A, Mammalian Alkyldihydroxyacetonephosphate Synthase: Wild-
Type, Adduct With Cyanoethyl
pdb|4BC9|B Chain B, Mammalian Alkyldihydroxyacetonephosphate Synthase: Wild-
Type, Adduct With Cyanoethyl
pdb|4BC9|C Chain C, Mammalian Alkyldihydroxyacetonephosphate Synthase: Wild-
Type, Adduct With Cyanoethyl
pdb|4BC9|D Chain D, Mammalian Alkyldihydroxyacetonephosphate Synthase: Wild-
Type, Adduct With Cyanoethyl
Length = 658
Score = 63.9 bits (154), Expect = 2e-11, Method: Composition-based stats.
Identities = 29/48 (60%), Positives = 37/48 (77%)
Query: 40 EDVEKVVQVAHDHNLVIIPFGGGTNVTGAVACPENELRTIISLDTSQM 87
+DV K+V +A +NL IIP GGGT+V+ + CP +E RTIISLDTSQM
Sbjct: 216 DDVVKIVNLACKYNLCIIPIGGGTSVSYGLMCPADETRTIISLDTSQM 263
>pdb|4BC7|A Chain A, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Arg419his Mutant
pdb|4BC7|B Chain B, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Arg419his Mutant
pdb|4BC7|C Chain C, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Arg419his Mutant
pdb|4BC7|D Chain D, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Arg419his Mutant
Length = 658
Score = 63.5 bits (153), Expect = 3e-11, Method: Composition-based stats.
Identities = 29/48 (60%), Positives = 37/48 (77%)
Query: 40 EDVEKVVQVAHDHNLVIIPFGGGTNVTGAVACPENELRTIISLDTSQM 87
+DV K+V +A +NL IIP GGGT+V+ + CP +E RTIISLDTSQM
Sbjct: 216 DDVVKIVNLACKYNLCIIPIGGGTSVSYGLMCPADETRTIISLDTSQM 263
>pdb|2UUU|A Chain A, Alkyldihydroxyacetonephosphate Synthase In P212121
pdb|2UUU|B Chain B, Alkyldihydroxyacetonephosphate Synthase In P212121
pdb|2UUU|C Chain C, Alkyldihydroxyacetonephosphate Synthase In P212121
pdb|2UUU|D Chain D, Alkyldihydroxyacetonephosphate Synthase In P212121
pdb|2UUV|A Chain A, Alkyldihydroxyacetonephosphate Synthase In P1
pdb|2UUV|B Chain B, Alkyldihydroxyacetonephosphate Synthase In P1
pdb|2UUV|C Chain C, Alkyldihydroxyacetonephosphate Synthase In P1
pdb|2UUV|D Chain D, Alkyldihydroxyacetonephosphate Synthase In P1
Length = 584
Score = 54.7 bits (130), Expect = 1e-08, Method: Composition-based stats.
Identities = 25/53 (47%), Positives = 38/53 (71%), Gaps = 1/53 (1%)
Query: 35 ITESTEDVEKVVQVAHDHNLVIIPFGGGTNVTGAVACPENELRTIISLDTSQM 87
+ S E+VE++VQ+AH +N+VIIP GGG+N+ GA+ NE R +S+D +M
Sbjct: 143 LPHSHEEVERLVQLAHKYNVVIIPMGGGSNIVGAIEPVSNE-RFTVSIDMRRM 194
>pdb|3PM9|A Chain A, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
pdb|3PM9|B Chain B, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
pdb|3PM9|C Chain C, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
pdb|3PM9|D Chain D, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
pdb|3PM9|E Chain E, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
pdb|3PM9|F Chain F, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
Length = 476
Score = 26.9 bits (58), Expect = 2.9, Method: Composition-based stats.
Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 8/79 (10%)
Query: 4 TEDVEKVVQVAHDHNLVVNHQAIFIGTRYWCITESTEDVEKVVQVAHDHNLVIIPFGGGT 63
T+ +E + + NL H + + STE+V + ++A++ + ++P GG T
Sbjct: 32 TDPLELEAYITEERNLYRGHSPLVLRP------GSTEEVVAICKLANEARVALVPQGGNT 85
Query: 64 NVTGAVACPENELRTIISL 82
+ G P N +ISL
Sbjct: 86 GLVGG-QTPHNG-EVVISL 102
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.131 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,563,799
Number of Sequences: 62578
Number of extensions: 90561
Number of successful extensions: 280
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 273
Number of HSP's gapped (non-prelim): 7
length of query: 90
length of database: 14,973,337
effective HSP length: 57
effective length of query: 33
effective length of database: 11,406,391
effective search space: 376410903
effective search space used: 376410903
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)