BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4717
(90 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9V778|ADAS_DROME Alkyldihydroxyacetonephosphate synthase OS=Drosophila melanogaster
GN=CG10253 PE=2 SV=1
Length = 631
Score = 67.8 bits (164), Expect = 2e-11, Method: Composition-based stats.
Identities = 26/48 (54%), Positives = 42/48 (87%)
Query: 40 EDVEKVVQVAHDHNLVIIPFGGGTNVTGAVACPENELRTIISLDTSQM 87
++V ++V++A+ HN++++PFGGGT+V+GA+ CP+NE R I +LDTSQM
Sbjct: 169 DEVVQLVRLANKHNVMLVPFGGGTSVSGAITCPQNESRMICALDTSQM 216
>sp|P97275|ADAS_CAVPO Alkyldihydroxyacetonephosphate synthase, peroxisomal OS=Cavia
porcellus GN=AGPS PE=1 SV=1
Length = 658
Score = 63.9 bits (154), Expect = 3e-10, Method: Composition-based stats.
Identities = 29/48 (60%), Positives = 37/48 (77%)
Query: 40 EDVEKVVQVAHDHNLVIIPFGGGTNVTGAVACPENELRTIISLDTSQM 87
+DV K+V +A +NL IIP GGGT+V+ + CP +E RTIISLDTSQM
Sbjct: 216 DDVVKIVNLACKYNLCIIPIGGGTSVSYGLMCPADETRTIISLDTSQM 263
>sp|O00116|ADAS_HUMAN Alkyldihydroxyacetonephosphate synthase, peroxisomal OS=Homo
sapiens GN=AGPS PE=1 SV=1
Length = 658
Score = 63.5 bits (153), Expect = 4e-10, Method: Composition-based stats.
Identities = 29/48 (60%), Positives = 37/48 (77%)
Query: 40 EDVEKVVQVAHDHNLVIIPFGGGTNVTGAVACPENELRTIISLDTSQM 87
+DV K+V +A +NL IIP GGGT+V+ + CP +E RTIISLDTSQM
Sbjct: 216 DDVVKIVNLACKYNLCIIPIGGGTSVSYGLMCPADETRTIISLDTSQM 263
>sp|Q8C0I1|ADAS_MOUSE Alkyldihydroxyacetonephosphate synthase, peroxisomal OS=Mus
musculus GN=Agps PE=1 SV=1
Length = 645
Score = 63.5 bits (153), Expect = 4e-10, Method: Composition-based stats.
Identities = 29/48 (60%), Positives = 37/48 (77%)
Query: 40 EDVEKVVQVAHDHNLVIIPFGGGTNVTGAVACPENELRTIISLDTSQM 87
+DV K+V +A +NL IIP GGGT+V+ + CP +E RTIISLDTSQM
Sbjct: 203 DDVVKIVNLACKYNLCIIPIGGGTSVSYGLMCPADETRTIISLDTSQM 250
>sp|Q9EQR2|ADAS_RAT Alkyldihydroxyacetonephosphate synthase, peroxisomal OS=Rattus
norvegicus GN=Agps PE=2 SV=1
Length = 644
Score = 63.5 bits (153), Expect = 4e-10, Method: Composition-based stats.
Identities = 29/48 (60%), Positives = 37/48 (77%)
Query: 40 EDVEKVVQVAHDHNLVIIPFGGGTNVTGAVACPENELRTIISLDTSQM 87
+DV K+V +A +NL IIP GGGT+V+ + CP +E RTIISLDTSQM
Sbjct: 202 DDVVKIVNLACKYNLCIIPIGGGTSVSYGLMCPADETRTIISLDTSQM 249
>sp|O96759|ADAS_DICDI Alkyldihydroxyacetonephosphate synthase OS=Dictyostelium discoideum
GN=eapA PE=1 SV=1
Length = 611
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 25/53 (47%), Positives = 38/53 (71%), Gaps = 1/53 (1%)
Query: 35 ITESTEDVEKVVQVAHDHNLVIIPFGGGTNVTGAVACPENELRTIISLDTSQM 87
+ S E+VE++VQ+AH +N+VIIP GGG+N+ GA+ NE R +S+D +M
Sbjct: 146 LPHSHEEVERLVQLAHKYNVVIIPMGGGSNIVGAIEPVSNE-RFTVSIDMRRM 197
>sp|O45218|ADAS_CAEEL Alkyldihydroxyacetonephosphate synthase OS=Caenorhabditis elegans
GN=ads-1 PE=2 SV=1
Length = 597
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 34/51 (66%)
Query: 37 ESTEDVEKVVQVAHDHNLVIIPFGGGTNVTGAVACPENELRTIISLDTSQM 87
+S ++ K+++ A HN IIP GGGT+VT A+ PE E R +IS+D + +
Sbjct: 142 KSEHEIVKIIEGAMSHNCAIIPIGGGTSVTNALDTPETEKRAVISMDMALL 192
>sp|P32891|DLD1_YEAST D-lactate dehydrogenase [cytochrome] 1, mitochondrial
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=DLD1 PE=1 SV=2
Length = 587
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 25/30 (83%)
Query: 38 STEDVEKVVQVAHDHNLVIIPFGGGTNVTG 67
+TE+V K++++ HD+N+ ++PF GGT++ G
Sbjct: 159 TTEEVSKILKICHDNNMPVVPFSGGTSLEG 188
>sp|Q12627|DLD1_KLULA D-lactate dehydrogenase [cytochrome], mitochondrial
OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=DLD1 PE=3
SV=2
Length = 576
Score = 37.0 bits (84), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 24/31 (77%)
Query: 37 ESTEDVEKVVQVAHDHNLVIIPFGGGTNVTG 67
+TEDV K++++ H +++ +IPF GGT++ G
Sbjct: 151 RNTEDVSKLLKICHKYSIPVIPFSGGTSLEG 181
>sp|Q94AX4|DLD_ARATH D-lactate dehydrogenase [cytochrome], mitochondrial OS=Arabidopsis
thaliana GN=DLD PE=1 SV=1
Length = 567
Score = 32.3 bits (72), Expect = 0.83, Method: Composition-based stats.
Identities = 14/51 (27%), Positives = 30/51 (58%), Gaps = 4/51 (7%)
Query: 38 STEDVEKVVQVAHDHNLVIIPFGGGTNVTGAVACPENELRTIISLDTSQMQ 88
S E+V K+++ +++ + I+P+GG T++ G P+ + +D S M+
Sbjct: 154 SEEEVSKILKSCNEYKVPIVPYGGATSIEGHTLAPKGG----VCIDMSLMK 200
>sp|P39976|DLD3_YEAST D-lactate dehydrogenase [cytochrome] 3 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=DLD3 PE=1 SV=1
Length = 496
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 12/34 (35%), Positives = 22/34 (64%)
Query: 35 ITESTEDVEKVVQVAHDHNLVIIPFGGGTNVTGA 68
+ ST+ V K+++ +D L ++P GG T++ GA
Sbjct: 73 LPNSTDKVSKIMKYCNDKKLAVVPQGGNTDLVGA 106
>sp|P94535|GLCD_BACSU Glycolate oxidase subunit GlcD OS=Bacillus subtilis (strain 168)
GN=glcD PE=3 SV=1
Length = 470
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 11/35 (31%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Query: 38 STEDVEKVVQVAHDHNLVIIPFGGGTNVTGAVACP 72
+T+++ +++ + +H + I+P G GTN+ G CP
Sbjct: 49 NTDEISRILTICSEHRVPIVPRGSGTNLCGG-TCP 82
>sp|A9KSS3|MURB_CLOPH UDP-N-acetylenolpyruvoylglucosamine reductase OS=Clostridium
phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg)
GN=murB PE=3 SV=1
Length = 310
Score = 31.2 bits (69), Expect = 1.7, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 23 HQAIFIG--TRYWCITESTEDVEKVVQVAHDHNLVIIPFGGGTNV 65
H + IG Y+ IT+ E+ V+Q + HNL ++ G G+N+
Sbjct: 27 HTSFKIGGPADYFVITKKIEETAAVIQCCNQHNLPLLMIGKGSNL 71
>sp|Q7UZK9|DAPA_PROMP 4-hydroxy-tetrahydrodipicolinate synthase OS=Prochlorococcus
marinus subsp. pastoris (strain CCMP1986 / MED4) GN=dapA
PE=3 SV=1
Length = 302
Score = 30.4 bits (67), Expect = 3.6, Method: Composition-based stats.
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 7/53 (13%)
Query: 14 AHDHNLVV-------NHQAIFIGTRYWCITESTEDVEKVVQVAHDHNLVIIPF 59
A HNL V + + +GT C +E+ E +K + D LV++P+
Sbjct: 65 AEQHNLFVAVKGSLNSRSKVIVGTGSNCTSEAIEATQKAYEFGADGALVVVPY 117
>sp|Q29L80|PITH1_DROPS PITH domain-containing protein GA19395 OS=Drosophila
pseudoobscura pseudoobscura GN=GA19395 PE=3 SV=1
Length = 211
Score = 29.3 bits (64), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 37 ESTEDVEKVVQVAHDHNLVI-IPFGGGTNVTGAVACPENE 75
ES +D+ K VQ D L+ IPF G + G + C N+
Sbjct: 59 ESRQDMSKFVQSDADEELLFNIPFTGNIKLKGIIICGAND 98
>sp|O05337|PDRP_STAAU Putative pyruvate, phosphate dikinase regulatory protein
OS=Staphylococcus aureus PE=3 SV=1
Length = 269
Score = 29.3 bits (64), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
Query: 31 RYWCITESTEDVEKVVQVAHDHNLVII 57
RY I ES EDV++V+QVA D N +I+
Sbjct: 39 RYPYI-ESFEDVDEVIQVAKDTNAIIV 64
>sp|Q4L6R3|PDRP2_STAHJ Putative pyruvate, phosphate dikinase regulatory protein 2
OS=Staphylococcus haemolyticus (strain JCSC1435)
GN=SH1353 PE=3 SV=1
Length = 271
Score = 29.3 bits (64), Expect = 7.9, Method: Composition-based stats.
Identities = 10/21 (47%), Positives = 18/21 (85%)
Query: 37 ESTEDVEKVVQVAHDHNLVII 57
E+ ED+++V+QVA+D N +I+
Sbjct: 44 ETKEDIDEVIQVANDRNAIIV 64
>sp|Q5L5A3|MURB_CHLAB UDP-N-acetylenolpyruvoylglucosamine reductase OS=Chlamydophila
abortus (strain S26/3) GN=murB PE=3 SV=1
Length = 296
Score = 28.9 bits (63), Expect = 8.7, Method: Composition-based stats.
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 32 YWCITESTEDVEKVVQVAHDHNLVIIPFGGGTN 64
Y+ + S + ++V+Q H HN I G G+N
Sbjct: 33 YFKVVHSASEAQQVIQFLHSHNYPFIIVGKGSN 65
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.131 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,461,049
Number of Sequences: 539616
Number of extensions: 1088865
Number of successful extensions: 2901
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 2846
Number of HSP's gapped (non-prelim): 57
length of query: 90
length of database: 191,569,459
effective HSP length: 60
effective length of query: 30
effective length of database: 159,192,499
effective search space: 4775774970
effective search space used: 4775774970
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)