Query psy4717
Match_columns 90
No_of_seqs 151 out of 1193
Neff 7.2
Searched_HMMs 46136
Date Sat Aug 17 00:02:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4717.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4717hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11183 D-lactate dehydrogena 99.5 6.2E-14 1.3E-18 108.8 8.3 64 26-89 35-99 (564)
2 PRK11230 glycolate oxidase sub 99.4 5.9E-13 1.3E-17 102.5 8.5 61 25-89 51-111 (499)
3 PLN02805 D-lactate dehydrogena 99.4 7.2E-13 1.6E-17 103.3 8.8 57 29-89 133-189 (555)
4 PF01565 FAD_binding_4: FAD bi 99.4 1.1E-12 2.3E-17 84.7 7.5 55 30-89 1-55 (139)
5 COG0277 GlcD FAD/FMN-containin 99.3 3.4E-12 7.3E-17 95.5 7.4 60 25-89 27-86 (459)
6 PRK12436 UDP-N-acetylenolpyruv 99.3 5E-12 1.1E-16 92.3 6.4 64 21-89 26-91 (305)
7 PRK14652 UDP-N-acetylenolpyruv 99.3 1.3E-11 2.8E-16 90.1 7.3 61 21-86 25-87 (302)
8 PRK13906 murB UDP-N-acetylenol 99.3 1.2E-11 2.7E-16 90.4 7.0 64 21-89 26-91 (307)
9 TIGR00179 murB UDP-N-acetyleno 99.3 1.6E-11 3.5E-16 88.8 7.0 63 22-89 3-67 (284)
10 PRK13905 murB UDP-N-acetylenol 99.2 2.4E-11 5.2E-16 88.2 7.1 63 22-89 21-86 (298)
11 TIGR00387 glcD glycolate oxida 99.2 1.6E-11 3.5E-16 92.3 5.2 53 33-89 1-53 (413)
12 KOG1233|consensus 99.2 1.7E-11 3.7E-16 92.6 4.9 86 3-89 131-220 (613)
13 PLN02441 cytokinin dehydrogena 99.2 7E-11 1.5E-15 91.7 8.4 61 24-89 59-121 (525)
14 PRK14649 UDP-N-acetylenolpyruv 99.2 1E-10 2.2E-15 85.1 7.0 62 21-87 10-73 (295)
15 PRK14653 UDP-N-acetylenolpyruv 99.1 2E-10 4.4E-15 83.8 6.8 63 21-89 23-87 (297)
16 PRK13903 murB UDP-N-acetylenol 99.1 3.2E-10 7E-15 84.7 7.2 60 21-85 22-83 (363)
17 KOG1231|consensus 99.0 4.9E-10 1.1E-14 85.5 6.1 68 10-86 49-118 (505)
18 TIGR01678 FAD_lactone_ox sugar 99.0 7.7E-10 1.7E-14 84.2 7.3 58 26-89 11-68 (438)
19 PRK14648 UDP-N-acetylenolpyruv 99.0 9.9E-10 2.1E-14 81.9 6.6 63 21-88 19-83 (354)
20 PRK14650 UDP-N-acetylenolpyruv 98.9 2.4E-09 5.3E-14 78.4 6.5 63 21-88 22-87 (302)
21 TIGR01677 pln_FAD_oxido plant- 98.9 4.4E-09 9.5E-14 82.3 8.0 62 26-89 28-90 (557)
22 TIGR01676 GLDHase galactonolac 98.9 2.9E-09 6.3E-14 83.0 6.7 58 26-89 58-115 (541)
23 PRK00046 murB UDP-N-acetylenol 98.9 3.2E-09 6.9E-14 78.7 6.5 61 21-88 10-72 (334)
24 COG0812 MurB UDP-N-acetylmuram 98.8 2.5E-08 5.4E-13 72.8 6.8 62 22-88 11-74 (291)
25 PLN02465 L-galactono-1,4-lacto 98.7 3.1E-08 6.7E-13 77.8 7.2 58 26-89 93-150 (573)
26 KOG1232|consensus 98.7 6.3E-09 1.4E-13 78.5 2.1 60 26-89 86-145 (511)
27 TIGR01679 bact_FAD_ox FAD-link 98.7 4.1E-08 8.9E-13 74.3 5.5 55 26-89 8-62 (419)
28 PRK14651 UDP-N-acetylenolpyruv 98.3 9.3E-07 2E-11 64.1 5.4 53 22-86 11-65 (273)
29 PRK11282 glcE glycolate oxidas 98.2 2.8E-06 6.1E-11 63.4 6.0 46 38-89 3-48 (352)
30 KOG4730|consensus 97.7 5.6E-05 1.2E-09 58.3 4.3 54 30-89 50-103 (518)
31 PRK13904 murB UDP-N-acetylenol 97.1 0.00073 1.6E-08 48.7 3.8 44 22-81 9-54 (257)
32 COG4359 Uncharacterized conser 88.0 0.68 1.5E-05 32.5 3.2 24 42-65 78-101 (220)
33 PF00941 FAD_binding_5: FAD bi 87.6 0.51 1.1E-05 31.6 2.4 50 32-87 4-53 (171)
34 PRK09799 putative oxidoreducta 85.6 2.1 4.5E-05 30.7 4.8 49 32-87 4-52 (258)
35 cd02742 GH20_hexosaminidase Be 85.0 1.1 2.5E-05 32.5 3.2 22 38-59 70-91 (303)
36 cd06568 GH20_SpHex_like A subg 84.9 1.1 2.5E-05 33.1 3.2 22 38-59 73-94 (329)
37 cd06565 GH20_GcnA-like Glycosy 84.4 1.3 2.7E-05 32.4 3.2 24 36-59 56-79 (301)
38 PF00728 Glyco_hydro_20: Glyco 83.9 1.1 2.4E-05 32.6 2.8 22 38-59 71-92 (351)
39 cd06570 GH20_chitobiase-like_1 83.1 1.5 3.3E-05 32.3 3.3 23 37-59 65-87 (311)
40 cd06563 GH20_chitobiase-like T 82.8 1.6 3.4E-05 32.6 3.2 22 38-59 84-105 (357)
41 cd06564 GH20_DspB_LnbB-like Gl 82.3 1.4 3.1E-05 32.3 2.8 22 38-59 80-101 (326)
42 TIGR03312 Se_sel_red_FAD proba 81.5 4.1 8.9E-05 29.2 4.9 48 33-87 4-51 (257)
43 cd06562 GH20_HexA_HexB-like Be 81.5 1.9 4.1E-05 32.1 3.2 22 38-59 68-89 (348)
44 KOG4498|consensus 81.0 6.6 0.00014 27.5 5.5 60 26-85 57-116 (197)
45 PF15608 PELOTA_1: PELOTA RNA 79.4 6.3 0.00014 24.7 4.6 33 30-62 57-89 (100)
46 cd06569 GH20_Sm-chitobiase-lik 79.0 2.5 5.3E-05 32.7 3.2 22 38-59 95-116 (445)
47 cd07033 TPP_PYR_DXS_TK_like Py 79.0 4.8 0.0001 26.4 4.2 29 31-59 125-153 (156)
48 TIGR01182 eda Entner-Doudoroff 78.4 4.2 9.1E-05 28.4 4.0 28 28-58 79-106 (204)
49 PF02601 Exonuc_VII_L: Exonucl 77.0 6.3 0.00014 28.6 4.8 28 37-64 55-88 (319)
50 PF02779 Transket_pyr: Transke 75.2 7 0.00015 26.0 4.3 33 31-63 139-173 (178)
51 PRK13352 thiamine biosynthesis 74.9 11 0.00023 29.4 5.6 58 5-65 206-271 (431)
52 KOG2499|consensus 74.7 3.3 7.1E-05 32.9 2.9 35 30-67 243-279 (542)
53 cd05014 SIS_Kpsf KpsF-like pro 74.0 7.8 0.00017 23.8 4.1 32 33-64 54-85 (128)
54 PRK09971 xanthine dehydrogenas 73.8 4 8.7E-05 29.6 3.0 51 32-88 6-56 (291)
55 PF13727 CoA_binding_3: CoA-bi 73.7 14 0.00031 23.4 5.4 26 33-58 147-173 (175)
56 TIGR00190 thiC thiamine biosyn 71.3 14 0.00031 28.6 5.6 58 5-65 203-268 (423)
57 cd07036 TPP_PYR_E1-PDHc-beta_l 70.9 10 0.00022 25.4 4.3 29 31-59 136-164 (167)
58 PRK14463 ribosomal RNA large s 70.6 13 0.00028 27.9 5.2 65 3-67 264-329 (349)
59 COG4981 Enoyl reductase domain 70.4 8.7 0.00019 31.2 4.3 30 30-59 152-182 (717)
60 PRK09417 mogA molybdenum cofac 70.1 14 0.0003 25.6 4.9 36 31-66 43-79 (193)
61 PF01081 Aldolase: KDPG and KH 68.6 11 0.00025 26.1 4.2 28 28-58 79-106 (196)
62 COG0422 ThiC Thiamine biosynth 67.5 18 0.0004 28.0 5.4 37 28-64 226-268 (432)
63 PRK04322 peptidyl-tRNA hydrola 67.0 18 0.00039 22.9 4.6 34 30-63 48-82 (113)
64 TIGR02963 xanthine_xdhA xanthi 66.9 10 0.00022 29.5 4.1 53 29-87 191-243 (467)
65 PF02603 Hpr_kinase_N: HPr Ser 66.7 5.4 0.00012 25.5 2.2 34 26-59 78-111 (127)
66 PF00994 MoCF_biosynth: Probab 66.5 23 0.0005 22.6 5.2 36 30-66 34-69 (144)
67 TIGR02667 moaB_proteo molybden 66.2 21 0.00046 23.7 5.1 36 31-66 40-76 (163)
68 PRK09860 putative alcohol dehy 66.0 7.9 0.00017 29.1 3.2 28 38-65 73-101 (383)
69 PF01964 ThiC: ThiC family; I 65.8 9 0.00019 29.7 3.5 59 5-65 202-267 (420)
70 smart00642 Aamy Alpha-amylase 65.7 9.9 0.00021 25.3 3.4 22 37-58 67-88 (166)
71 PF13378 MR_MLE_C: Enolase C-t 65.1 12 0.00026 22.7 3.5 27 37-63 30-56 (111)
72 PRK15138 aldehyde reductase; P 64.5 8.1 0.00018 29.1 3.1 29 37-65 69-98 (387)
73 PF01113 DapB_N: Dihydrodipico 64.2 15 0.00033 23.1 3.9 35 30-64 68-102 (124)
74 PRK13575 3-dehydroquinate dehy 64.2 17 0.00038 25.7 4.6 34 30-63 159-196 (238)
75 PF01487 DHquinase_I: Type I 3 64.2 8.5 0.00018 26.5 2.9 35 30-64 147-185 (224)
76 cd00886 MogA_MoaB MogA_MoaB fa 63.9 26 0.00056 22.8 5.1 36 31-66 38-74 (152)
77 PRK14466 ribosomal RNA large s 63.8 23 0.0005 26.7 5.3 65 3-67 264-329 (345)
78 PF00128 Alpha-amylase: Alpha 62.8 7.9 0.00017 26.7 2.6 22 37-58 49-70 (316)
79 COG0800 Eda 2-keto-3-deoxy-6-p 62.5 11 0.00024 26.6 3.2 28 28-58 84-111 (211)
80 PRK02412 aroD 3-dehydroquinate 62.3 19 0.00041 25.6 4.5 34 30-63 169-207 (253)
81 PRK05718 keto-hydroxyglutarate 61.8 9 0.0002 26.8 2.7 29 27-58 85-113 (212)
82 TIGR03195 4hydrxCoA_B 4-hydrox 61.6 9.9 0.00021 28.3 3.0 50 32-87 6-55 (321)
83 TIGR00048 radical SAM enzyme, 61.6 31 0.00068 25.9 5.7 67 3-69 272-339 (355)
84 TIGR00177 molyb_syn molybdenum 61.6 26 0.00057 22.5 4.7 35 31-66 45-79 (144)
85 cd08185 Fe-ADH1 Iron-containin 61.5 13 0.00028 27.7 3.7 28 38-65 68-96 (380)
86 PF01981 PTH2: Peptidyl-tRNA h 61.4 25 0.00053 22.0 4.5 37 29-65 50-87 (116)
87 PRK09284 thiamine biosynthesis 61.3 28 0.00061 28.2 5.6 37 28-64 378-420 (607)
88 PF02844 GARS_N: Phosphoribosy 61.2 8.3 0.00018 24.1 2.2 29 35-63 44-72 (100)
89 cd08189 Fe-ADH5 Iron-containin 61.1 13 0.00029 27.6 3.7 29 37-65 67-96 (374)
90 cd04795 SIS SIS domain. SIS (S 61.1 18 0.00039 20.4 3.6 26 35-60 56-81 (87)
91 PLN02444 HMP-P synthase 61.1 29 0.00062 28.3 5.6 38 28-65 383-426 (642)
92 PRK06552 keto-hydroxyglutarate 61.1 16 0.00034 25.5 3.8 28 28-58 87-114 (213)
93 cd06556 ICL_KPHMT Members of t 60.9 27 0.00059 24.9 5.0 40 28-69 168-207 (240)
94 PRK00286 xseA exodeoxyribonucl 60.9 16 0.00035 27.8 4.1 34 30-63 163-204 (438)
95 cd08192 Fe-ADH7 Iron-containin 60.6 14 0.0003 27.5 3.7 29 37-65 65-94 (370)
96 TIGR01357 aroB 3-dehydroquinat 60.5 13 0.00029 27.2 3.6 29 37-65 62-94 (344)
97 cd02407 PTH2_family Peptidyl-t 60.2 29 0.00062 22.0 4.6 34 30-63 50-84 (115)
98 smart00852 MoCF_biosynth Proba 60.1 35 0.00076 21.5 5.1 35 31-66 36-70 (135)
99 cd08195 DHQS Dehydroquinate sy 59.6 14 0.00031 27.2 3.6 29 37-65 66-98 (345)
100 KOG1185|consensus 59.2 24 0.00051 28.4 4.8 57 2-66 202-258 (571)
101 TIGR00283 arch_pth2 peptidyl-t 59.0 31 0.00066 21.9 4.6 34 30-63 50-84 (115)
102 PRK07106 5-aminoimidazole-4-ca 58.9 13 0.00029 28.6 3.3 35 29-63 353-387 (390)
103 cd05710 SIS_1 A subgroup of th 58.9 25 0.00053 21.8 4.1 30 35-64 56-85 (120)
104 TIGR02638 lactal_redase lactal 58.7 14 0.00031 27.6 3.5 29 38-66 71-100 (379)
105 PRK14454 ribosomal RNA large s 58.7 37 0.00081 25.4 5.7 62 3-66 265-329 (342)
106 smart00861 Transket_pyr Transk 58.2 25 0.00055 22.9 4.3 22 31-52 134-155 (168)
107 PRK14455 ribosomal RNA large s 58.1 37 0.00081 25.5 5.6 62 3-66 276-340 (356)
108 PRK14467 ribosomal RNA large s 58.0 29 0.00062 26.1 4.9 66 3-68 266-334 (348)
109 cd08196 DHQS-like1 Dehydroquin 57.9 16 0.00034 27.3 3.6 29 37-65 57-89 (346)
110 TIGR00441 gmhA phosphoheptose 57.8 22 0.00048 23.1 3.9 30 34-63 87-116 (154)
111 cd08178 AAD_C C-terminal alcoh 57.7 17 0.00036 27.4 3.7 29 37-65 62-91 (398)
112 PRK11194 ribosomal RNA large s 57.6 37 0.0008 25.8 5.5 64 3-68 276-342 (372)
113 cd08197 DOIS 2-deoxy-scyllo-in 57.6 16 0.00036 27.3 3.6 29 37-65 65-97 (355)
114 PRK10624 L-1,2-propanediol oxi 57.2 16 0.00034 27.4 3.5 29 38-66 72-101 (382)
115 COG0521 MoaB Molybdopterin bio 57.1 38 0.00082 23.1 5.0 37 30-66 44-80 (169)
116 TIGR01093 aroD 3-dehydroquinat 57.1 21 0.00045 24.8 3.9 35 30-64 152-190 (228)
117 KOG1342|consensus 57.0 15 0.00031 28.5 3.2 27 37-63 275-301 (425)
118 cd07766 DHQ_Fe-ADH Dehydroquin 56.8 18 0.00038 26.3 3.6 29 37-65 62-91 (332)
119 cd08180 PDD 1,3-propanediol de 56.6 17 0.00038 26.5 3.6 28 38-65 63-91 (332)
120 cd03522 MoeA_like MoeA_like. T 56.6 28 0.0006 25.8 4.6 36 31-66 197-232 (312)
121 cd08182 HEPD Hydroxyethylphosp 56.5 16 0.00035 27.1 3.4 28 38-65 62-90 (367)
122 PRK06015 keto-hydroxyglutarate 56.4 21 0.00046 24.8 3.8 28 28-58 75-102 (201)
123 PF05822 UMPH-1: Pyrimidine 5' 56.3 8.4 0.00018 27.8 1.8 23 41-63 94-116 (246)
124 cd00758 MoCF_BD MoCF_BD: molyb 56.2 33 0.00071 21.7 4.5 33 33-66 39-71 (133)
125 cd05017 SIS_PGI_PMI_1 The memb 56.0 23 0.00051 21.8 3.7 31 35-65 52-82 (119)
126 cd01391 Periplasmic_Binding_Pr 56.0 32 0.00069 22.3 4.5 36 29-64 58-93 (269)
127 PRK14457 ribosomal RNA large s 55.9 35 0.00075 25.6 5.1 65 3-67 269-334 (345)
128 cd00885 cinA Competence-damage 55.8 42 0.00092 22.4 5.1 35 31-66 37-71 (170)
129 TIGR00237 xseA exodeoxyribonuc 55.8 24 0.00052 27.2 4.3 36 30-65 163-201 (432)
130 cd08551 Fe-ADH iron-containing 55.4 18 0.00039 26.8 3.5 29 37-65 64-93 (370)
131 TIGR01544 HAD-SF-IE haloacid d 55.3 16 0.00035 26.7 3.2 25 40-64 124-148 (277)
132 PF13580 SIS_2: SIS domain; PD 55.1 16 0.00034 23.3 2.8 28 37-64 19-46 (138)
133 PLN02520 bifunctional 3-dehydr 55.1 21 0.00046 28.1 4.0 34 30-63 169-202 (529)
134 cd08550 GlyDH-like Glycerol_de 54.9 20 0.00044 26.4 3.7 28 38-65 62-90 (349)
135 cd00502 DHQase_I Type I 3-dehy 54.9 21 0.00045 24.6 3.6 35 30-64 147-185 (225)
136 TIGR02109 PQQ_syn_pqqE coenzym 54.8 51 0.0011 24.2 5.8 78 3-88 38-117 (358)
137 COG1920 Predicted nucleotidylt 54.7 8 0.00017 27.3 1.5 29 38-66 100-129 (210)
138 PRK00881 purH bifunctional pho 54.6 24 0.00051 28.2 4.2 35 29-63 476-510 (513)
139 PRK03670 competence damage-ind 54.6 37 0.00079 24.4 4.9 36 31-66 38-73 (252)
140 KOG3282|consensus 54.6 35 0.00076 23.8 4.5 36 29-64 124-160 (190)
141 COG1319 CoxM Aerobic-type carb 54.4 16 0.00036 26.8 3.1 51 31-87 4-54 (284)
142 PF13407 Peripla_BP_4: Peripla 54.4 16 0.00034 24.8 2.9 34 29-62 55-89 (257)
143 cd08186 Fe-ADH8 Iron-containin 54.3 21 0.00045 26.8 3.7 28 38-65 69-97 (383)
144 PRK09212 pyruvate dehydrogenas 54.3 27 0.00059 25.8 4.3 29 31-59 143-171 (327)
145 cd02430 PTH2 Peptidyl-tRNA hyd 54.2 41 0.00089 21.3 4.6 33 30-62 50-83 (115)
146 cd06312 PBP1_ABC_sugar_binding 53.8 34 0.00073 23.3 4.5 34 29-62 57-91 (271)
147 cd05008 SIS_GlmS_GlmD_1 SIS (S 53.7 32 0.00069 20.9 4.0 28 36-63 56-83 (126)
148 COG1570 XseA Exonuclease VII, 53.6 27 0.00058 27.4 4.2 34 30-63 163-205 (440)
149 cd06311 PBP1_ABC_sugar_binding 53.4 34 0.00073 23.3 4.4 34 30-63 61-95 (274)
150 PF10087 DUF2325: Uncharacteri 53.3 41 0.00088 20.1 4.3 31 30-60 49-82 (97)
151 PF01212 Beta_elim_lyase: Beta 52.9 13 0.00028 27.1 2.3 27 35-61 140-166 (290)
152 cd08176 LPO Lactadehyde:propan 52.8 21 0.00044 26.7 3.5 29 37-65 69-98 (377)
153 PRK14456 ribosomal RNA large s 52.7 46 0.001 25.2 5.4 33 34-66 323-356 (368)
154 PRK15454 ethanol dehydrogenase 52.1 16 0.00036 27.6 2.9 28 38-65 91-119 (395)
155 cd06268 PBP1_ABC_transporter_L 51.2 25 0.00054 23.6 3.5 36 29-64 66-101 (298)
156 PF01408 GFO_IDH_MocA: Oxidore 51.1 19 0.00041 21.7 2.6 21 38-58 98-118 (120)
157 PLN02683 pyruvate dehydrogenas 51.0 32 0.0007 25.8 4.3 29 31-59 166-194 (356)
158 cd08177 MAR Maleylacetate redu 51.0 24 0.00051 25.9 3.5 28 38-65 62-90 (337)
159 COG1979 Uncharacterized oxidor 50.8 23 0.00049 27.1 3.4 28 39-66 71-99 (384)
160 COG1879 RbsB ABC-type sugar tr 50.8 31 0.00067 24.6 4.0 35 31-65 94-128 (322)
161 cd08194 Fe-ADH6 Iron-containin 50.8 24 0.00052 26.3 3.6 28 38-65 65-93 (375)
162 PRK13937 phosphoheptose isomer 50.7 36 0.00078 22.9 4.2 27 35-61 115-141 (188)
163 cd08181 PPD-like 1,3-propanedi 50.5 25 0.00053 26.1 3.6 30 37-66 67-97 (357)
164 PRK05301 pyrroloquinoline quin 50.3 60 0.0013 24.0 5.6 78 3-88 47-126 (378)
165 PRK06683 hypothetical protein; 50.2 33 0.00072 20.3 3.5 34 29-62 27-62 (82)
166 PRK04175 rpl7ae 50S ribosomal 50.2 28 0.0006 22.2 3.4 33 30-62 47-82 (122)
167 cd08179 NADPH_BDH NADPH-depend 50.1 27 0.00058 26.1 3.7 29 37-65 65-94 (375)
168 COG0138 PurH AICAR transformyl 50.0 25 0.00055 28.0 3.6 35 29-63 478-512 (515)
169 cd08170 GlyDH Glycerol dehydro 50.0 23 0.0005 26.1 3.3 28 38-65 62-90 (351)
170 cd08193 HVD 5-hydroxyvalerate 49.9 25 0.00053 26.2 3.5 29 37-65 67-96 (376)
171 CHL00144 odpB pyruvate dehydro 49.5 36 0.00078 25.2 4.3 30 30-59 141-171 (327)
172 TIGR02637 RhaS rhamnose ABC tr 49.5 46 0.001 23.2 4.7 33 30-62 57-90 (302)
173 PRK06852 aldolase; Validated 49.5 20 0.00044 26.6 3.0 22 36-57 150-171 (304)
174 cd08172 GlyDH-like1 Glycerol d 49.2 25 0.00055 25.9 3.4 29 37-65 60-89 (347)
175 TIGR03127 RuMP_HxlB 6-phospho 49.1 43 0.00093 22.0 4.3 28 35-62 81-108 (179)
176 PRK14464 ribosomal RNA large s 49.1 53 0.0011 24.8 5.1 66 3-68 256-322 (344)
177 PRK14461 ribosomal RNA large s 48.8 46 0.001 25.5 4.8 66 3-68 285-357 (371)
178 PRK10178 D-alanyl-D-alanine di 48.7 20 0.00043 24.8 2.6 45 13-59 23-67 (184)
179 PF09970 DUF2204: Nucleotidyl 48.6 24 0.00051 24.0 3.0 25 40-64 3-27 (181)
180 COG0710 AroD 3-dehydroquinate 48.6 40 0.00086 24.1 4.2 35 30-64 150-187 (231)
181 cd08190 HOT Hydroxyacid-oxoaci 48.5 28 0.00062 26.4 3.7 28 38-65 65-93 (414)
182 COG1519 KdtA 3-deoxy-D-manno-o 48.5 1E+02 0.0022 24.1 6.6 34 29-62 260-293 (419)
183 PF01380 SIS: SIS domain SIS d 48.3 43 0.00093 20.2 4.0 29 35-63 62-90 (131)
184 PF05889 SLA_LP_auto_ag: Solub 48.3 13 0.00029 28.6 1.9 25 34-58 166-190 (389)
185 cd01539 PBP1_GGBP Periplasmic 48.2 47 0.001 23.4 4.6 34 29-62 57-91 (303)
186 PRK06552 keto-hydroxyglutarate 48.1 82 0.0018 21.9 5.7 31 29-59 14-44 (213)
187 PF09383 NIL: NIL domain; Int 47.8 50 0.0011 18.6 4.0 28 30-57 47-74 (76)
188 PRK09552 mtnX 2-hydroxy-3-keto 47.8 27 0.00059 23.7 3.2 26 40-65 77-102 (219)
189 PRK14468 ribosomal RNA large s 47.7 54 0.0012 24.5 5.0 61 4-66 261-324 (343)
190 COG2144 Selenophosphate synthe 47.7 35 0.00075 25.6 3.9 36 30-65 258-297 (324)
191 PRK08227 autoinducer 2 aldolas 47.7 24 0.00052 25.6 3.0 23 36-58 123-145 (264)
192 COG3962 Acetolactate synthase 47.6 31 0.00068 27.7 3.8 32 36-67 213-244 (617)
193 cd08173 Gro1PDH Sn-glycerol-1- 47.6 27 0.00059 25.6 3.4 28 38-65 63-91 (339)
194 cd04509 PBP1_ABC_transporter_G 47.3 40 0.00086 22.6 4.0 36 29-64 67-102 (299)
195 PRK07418 acetolactate synthase 47.3 60 0.0013 25.9 5.5 28 38-65 210-237 (616)
196 PF14907 NTP_transf_5: Unchara 47.2 28 0.00061 23.8 3.3 24 40-63 58-81 (249)
197 PLN02834 3-dehydroquinate synt 47.1 39 0.00085 26.1 4.3 29 37-65 144-176 (433)
198 PF12427 DUF3665: Branched-cha 47.0 18 0.0004 16.6 1.5 12 35-46 11-22 (23)
199 COG1168 MalY Bifunctional PLP- 47.0 23 0.0005 27.3 3.0 20 38-57 176-195 (388)
200 PF07287 DUF1446: Protein of u 46.9 33 0.00071 26.1 3.8 33 34-66 52-84 (362)
201 KOG0369|consensus 46.8 21 0.00045 30.1 2.8 25 35-59 166-190 (1176)
202 cd08171 GlyDH-like2 Glycerol d 46.8 27 0.00058 25.7 3.3 28 38-65 63-91 (345)
203 PF07071 DUF1341: Protein of u 46.8 34 0.00074 24.3 3.6 25 37-61 161-185 (218)
204 cd02429 PTH2_like Peptidyl-tRN 46.6 63 0.0014 20.6 4.5 31 29-59 55-85 (116)
205 PRK08659 2-oxoglutarate ferred 46.6 41 0.00089 25.4 4.3 34 30-63 135-172 (376)
206 TIGR02666 moaA molybdenum cofa 46.5 35 0.00075 24.9 3.8 35 30-64 158-198 (334)
207 PRK07714 hypothetical protein; 46.5 38 0.00082 20.6 3.4 33 29-61 34-68 (100)
208 PRK03604 moaC bifunctional mol 46.1 58 0.0013 24.2 4.9 36 31-66 193-228 (312)
209 cd08184 Fe-ADH3 Iron-containin 46.1 30 0.00065 25.8 3.4 28 38-65 63-94 (347)
210 COG1154 Dxs Deoxyxylulose-5-ph 46.1 38 0.00082 27.7 4.1 36 30-65 441-481 (627)
211 KOG0258|consensus 46.0 49 0.0011 26.0 4.6 32 26-57 214-252 (475)
212 PRK09627 oorA 2-oxoglutarate-a 46.0 39 0.00085 25.6 4.1 33 30-62 134-170 (375)
213 cd06322 PBP1_ABC_sugar_binding 46.0 54 0.0012 22.1 4.5 33 29-61 55-88 (267)
214 PF02775 TPP_enzyme_C: Thiamin 45.7 51 0.0011 21.0 4.2 24 35-58 128-151 (153)
215 PRK02936 argD acetylornithine 45.5 28 0.00061 25.4 3.2 23 36-58 184-206 (377)
216 PF14542 Acetyltransf_CG: GCN5 45.4 28 0.0006 20.2 2.6 19 41-59 43-61 (78)
217 PRK15452 putative protease; Pr 45.3 48 0.001 25.8 4.5 24 36-59 42-65 (443)
218 cd06330 PBP1_Arsenic_SBP_like 45.3 45 0.00098 23.7 4.2 36 29-64 67-102 (346)
219 PF00465 Fe-ADH: Iron-containi 45.3 21 0.00045 26.4 2.5 31 35-65 60-91 (366)
220 PTZ00182 3-methyl-2-oxobutanat 45.2 45 0.00098 25.0 4.3 29 31-59 174-202 (355)
221 PRK10886 DnaA initiator-associ 45.0 48 0.001 22.8 4.1 28 36-63 119-146 (196)
222 PRK00843 egsA NAD(P)-dependent 44.8 32 0.0007 25.4 3.5 30 36-65 70-100 (350)
223 cd08187 BDH Butanol dehydrogen 44.8 31 0.00066 25.8 3.3 28 38-65 71-99 (382)
224 TIGR02634 xylF D-xylose ABC tr 44.7 53 0.0011 23.2 4.4 33 30-62 55-88 (302)
225 PRK13936 phosphoheptose isomer 44.5 50 0.0011 22.4 4.2 29 35-63 120-148 (197)
226 TIGR01229 rocF_arginase argina 44.5 30 0.00065 25.1 3.2 30 40-69 70-99 (300)
227 cd05005 SIS_PHI Hexulose-6-pho 44.4 49 0.0011 21.7 4.0 29 35-63 84-112 (179)
228 TIGR00355 purH phosphoribosyla 44.2 29 0.00064 27.7 3.3 35 29-63 474-508 (511)
229 COG2159 Predicted metal-depend 44.2 94 0.002 22.6 5.7 40 26-65 130-169 (293)
230 PRK14470 ribosomal RNA large s 44.1 67 0.0014 24.0 5.0 64 3-67 260-326 (336)
231 cd05006 SIS_GmhA Phosphoheptos 44.0 52 0.0011 21.6 4.1 28 36-63 111-138 (177)
232 COG1058 CinA Predicted nucleot 44.0 56 0.0012 23.7 4.4 35 31-66 39-73 (255)
233 COG0041 PurE Phosphoribosylcar 43.9 82 0.0018 21.4 4.9 57 1-63 9-67 (162)
234 PRK13772 formimidoylglutamase; 43.6 22 0.00048 26.1 2.4 31 39-69 102-132 (314)
235 PRK01215 competence damage-ind 43.6 68 0.0015 23.1 4.9 35 31-66 41-75 (264)
236 PRK09250 fructose-bisphosphate 43.4 32 0.0007 26.1 3.3 22 37-58 176-197 (348)
237 PF10609 ParA: ParA/MinD ATPas 43.3 31 0.00068 20.7 2.6 27 31-57 29-57 (81)
238 TIGR03677 rpl7ae 50S ribosomal 43.2 40 0.00086 21.3 3.2 33 30-62 43-78 (117)
239 PRK13775 formimidoylglutamase; 43.1 17 0.00036 26.9 1.7 31 39-69 109-139 (328)
240 COG1990 pth2 Peptidyl-tRNA hyd 43.1 92 0.002 20.2 5.1 28 29-56 56-83 (122)
241 cd06320 PBP1_allose_binding Pe 43.1 55 0.0012 22.2 4.2 34 29-62 57-91 (275)
242 PRK13938 phosphoheptose isomer 43.1 47 0.001 22.8 3.9 28 37-64 124-151 (196)
243 PF13986 DUF4224: Domain of un 42.9 39 0.00084 18.0 2.7 21 43-63 18-38 (47)
244 cd08183 Fe-ADH2 Iron-containin 42.9 37 0.00081 25.3 3.6 28 38-65 60-88 (374)
245 cd04724 Tryptophan_synthase_al 42.8 1.2E+02 0.0025 21.3 5.9 35 29-63 104-140 (242)
246 PRK14462 ribosomal RNA large s 42.5 75 0.0016 24.0 5.1 63 3-67 277-342 (356)
247 PLN02891 IMP cyclohydrolase 42.5 32 0.00069 27.7 3.2 35 29-63 510-544 (547)
248 TIGR03531 selenium_SpcS O-phos 42.4 25 0.00053 27.4 2.6 22 37-58 219-240 (444)
249 PRK09310 aroDE bifunctional 3- 42.4 45 0.00097 26.0 4.0 34 30-63 133-166 (477)
250 cd06360 PBP1_alkylbenzenes_lik 42.4 60 0.0013 22.8 4.4 35 29-63 189-225 (336)
251 TIGR00393 kpsF KpsF/GutQ famil 42.4 53 0.0012 22.8 4.1 32 34-65 55-86 (268)
252 cd06313 PBP1_ABC_sugar_binding 42.4 61 0.0013 22.2 4.4 34 30-63 56-90 (272)
253 PF13611 Peptidase_S76: Serine 42.3 37 0.00081 22.0 3.0 35 30-65 27-62 (121)
254 PRK11543 gutQ D-arabinose 5-ph 42.0 54 0.0012 23.5 4.2 29 35-63 98-126 (321)
255 PF10740 DUF2529: Protein of u 41.6 43 0.00094 23.0 3.4 30 31-60 85-115 (172)
256 PRK09441 cytoplasmic alpha-amy 41.5 37 0.0008 26.2 3.4 21 38-58 79-99 (479)
257 cd01582 Homoaconitase Homoacon 41.5 21 0.00046 27.2 2.0 27 36-62 42-68 (363)
258 cd00609 AAT_like Aspartate ami 41.4 35 0.00075 23.9 3.1 23 38-60 150-172 (350)
259 cd03768 SR_ResInv Serine Recom 41.4 68 0.0015 19.5 4.1 28 37-64 68-95 (126)
260 cd06316 PBP1_ABC_sugar_binding 41.4 47 0.001 23.0 3.7 33 30-62 57-90 (294)
261 cd00617 Tnase_like Tryptophana 41.3 34 0.00075 26.3 3.2 23 35-57 168-190 (431)
262 PF02244 Propep_M14: Carboxype 41.3 47 0.001 18.6 3.1 28 34-61 3-30 (74)
263 PF08544 GHMP_kinases_C: GHMP 41.2 57 0.0012 18.3 3.5 26 36-61 30-56 (85)
264 cd06342 PBP1_ABC_LIVBP_like Ty 41.2 81 0.0018 22.1 4.9 33 29-61 190-222 (334)
265 PRK15116 sulfur acceptor prote 41.2 87 0.0019 22.7 5.1 37 29-65 121-158 (268)
266 cd08188 Fe-ADH4 Iron-containin 41.2 42 0.00092 25.1 3.6 28 38-65 70-98 (377)
267 PTZ00063 histone deacetylase; 41.2 41 0.00089 26.3 3.6 28 38-65 274-302 (436)
268 PF04800 ETC_C1_NDUFA4: ETC co 41.1 35 0.00076 21.3 2.7 20 42-61 58-77 (101)
269 COG1179 Dinucleotide-utilizing 41.0 35 0.00075 25.0 3.0 37 29-65 121-158 (263)
270 cd01427 HAD_like Haloacid deha 40.9 35 0.00075 20.0 2.7 24 40-63 27-50 (139)
271 cd05013 SIS_RpiR RpiR-like pro 40.9 58 0.0012 19.6 3.7 28 37-64 71-98 (139)
272 TIGR02826 RNR_activ_nrdG3 anae 40.8 56 0.0012 21.4 3.8 27 38-64 73-99 (147)
273 KOG1185|consensus 40.8 47 0.001 26.7 3.9 30 37-66 202-231 (571)
274 PRK13125 trpA tryptophan synth 40.5 76 0.0017 22.2 4.7 35 29-63 101-140 (244)
275 PF14871 GHL6: Hypothetical gl 40.5 38 0.00082 21.9 2.9 21 40-60 44-64 (132)
276 cd06321 PBP1_ABC_sugar_binding 40.5 68 0.0015 21.7 4.3 33 30-62 58-91 (271)
277 COG4821 Uncharacterized protei 40.3 43 0.00094 24.0 3.3 27 39-65 24-50 (243)
278 COG2008 GLY1 Threonine aldolas 40.3 34 0.00074 25.9 3.0 24 38-61 148-171 (342)
279 TIGR03333 salvage_mtnX 2-hydro 40.1 38 0.00082 22.9 3.0 25 40-64 73-97 (214)
280 cd01540 PBP1_arabinose_binding 40.1 59 0.0013 22.3 4.0 34 29-62 54-88 (289)
281 PRK15408 autoinducer 2-binding 40.1 76 0.0017 23.2 4.8 34 29-62 80-114 (336)
282 TIGR01230 agmatinase agmatinas 39.9 24 0.00051 25.3 2.0 31 39-69 79-109 (275)
283 TIGR01491 HAD-SF-IB-PSPlk HAD- 39.7 37 0.0008 22.1 2.8 25 40-64 83-107 (201)
284 cd01425 RPS2 Ribosomal protein 39.7 45 0.00097 22.7 3.3 32 28-60 126-157 (193)
285 PTZ00222 60S ribosomal protein 39.5 49 0.0011 24.2 3.5 35 30-64 149-186 (263)
286 TIGR00106 uncharacterized prot 39.4 85 0.0018 19.2 4.2 28 39-66 18-45 (97)
287 PRK07324 transaminase; Validat 39.4 65 0.0014 23.7 4.3 21 38-58 171-191 (373)
288 PRK05093 argD bifunctional N-s 39.4 41 0.00088 25.0 3.3 22 36-57 201-222 (403)
289 TIGR02668 moaA_archaeal probab 39.2 72 0.0016 22.8 4.4 35 29-63 152-192 (302)
290 PRK13774 formimidoylglutamase; 39.2 19 0.00042 26.3 1.5 31 39-69 106-136 (311)
291 PLN00196 alpha-amylase; Provis 39.1 43 0.00093 25.9 3.4 22 37-58 89-110 (428)
292 cd06301 PBP1_rhizopine_binding 39.0 71 0.0015 21.6 4.3 34 29-62 56-90 (272)
293 PRK07119 2-ketoisovalerate fer 39.0 68 0.0015 24.0 4.4 34 30-63 135-172 (352)
294 PRK12474 hypothetical protein; 38.9 1E+02 0.0022 24.0 5.5 28 38-65 187-214 (518)
295 TIGR00288 conserved hypothetic 38.9 83 0.0018 21.2 4.4 37 29-65 105-141 (160)
296 COG4747 ACT domain-containing 38.8 1.1E+02 0.0025 20.1 5.1 52 6-58 82-135 (142)
297 PRK00048 dihydrodipicolinate r 38.8 1E+02 0.0022 21.7 5.2 36 29-64 60-95 (257)
298 COG2921 Uncharacterized conser 38.5 96 0.0021 19.1 5.8 48 6-54 31-85 (90)
299 PRK05899 transketolase; Review 38.2 63 0.0014 25.9 4.3 32 31-62 453-485 (624)
300 cd06310 PBP1_ABC_sugar_binding 38.1 74 0.0016 21.5 4.2 34 29-62 57-91 (273)
301 cd00755 YgdL_like Family of ac 38.1 1E+02 0.0022 21.7 5.0 33 29-61 102-135 (231)
302 cd06318 PBP1_ABC_sugar_binding 38.1 57 0.0012 22.2 3.7 34 29-62 55-89 (282)
303 PLN02721 threonine aldolase 37.7 45 0.00097 23.7 3.2 23 38-60 156-178 (353)
304 PRK00002 aroB 3-dehydroquinate 37.6 52 0.0011 24.4 3.6 29 37-65 73-105 (358)
305 TIGR03405 Phn_Fe-ADH phosphona 37.5 54 0.0012 24.3 3.7 28 38-65 63-93 (355)
306 PRK14469 ribosomal RNA large s 37.4 1.3E+02 0.0029 22.3 5.7 61 4-67 266-329 (343)
307 cd06300 PBP1_ABC_sugar_binding 37.4 81 0.0018 21.3 4.4 34 29-62 60-94 (272)
308 PRK10892 D-arabinose 5-phospha 37.4 67 0.0015 23.2 4.1 29 37-65 105-133 (326)
309 cd01538 PBP1_ABC_xylose_bindin 37.3 82 0.0018 21.8 4.4 34 29-62 55-89 (288)
310 COG1712 Predicted dinucleotide 37.3 79 0.0017 23.0 4.3 36 28-63 59-94 (255)
311 PRK00414 gmhA phosphoheptose i 37.3 74 0.0016 21.5 4.1 29 35-63 120-148 (192)
312 PLN02361 alpha-amylase 37.3 47 0.001 25.5 3.4 22 37-58 73-94 (401)
313 PRK09082 methionine aminotrans 37.3 41 0.00088 24.8 3.0 21 38-58 181-201 (386)
314 TIGR01488 HAD-SF-IB Haloacid D 37.1 40 0.00087 21.5 2.7 25 40-64 76-100 (177)
315 PRK13773 formimidoylglutamase; 37.1 27 0.0006 25.7 2.0 31 39-69 105-135 (324)
316 cd06348 PBP1_ABC_ligand_bindin 37.1 1.1E+02 0.0023 21.8 5.1 33 29-61 192-224 (344)
317 PF03614 Flag1_repress: Repres 37.1 54 0.0012 22.2 3.2 30 32-61 8-37 (165)
318 cd06307 PBP1_uncharacterized_s 37.0 86 0.0019 21.3 4.4 34 29-62 58-92 (275)
319 PF09413 DUF2007: Domain of un 36.7 75 0.0016 17.4 3.6 34 33-66 3-36 (67)
320 TIGR02403 trehalose_treC alpha 36.7 48 0.001 26.2 3.4 22 37-58 72-93 (543)
321 cd06361 PBP1_GPC6A_like Ligand 36.5 63 0.0014 24.2 3.9 34 28-61 233-266 (403)
322 TIGR02064 dsrA sulfite reducta 36.5 1.8E+02 0.0038 22.5 6.3 62 3-68 95-157 (402)
323 cd06167 LabA_like LabA_like pr 36.4 51 0.0011 20.7 3.0 36 29-64 99-134 (149)
324 PRK13776 formimidoylglutamase; 36.3 27 0.00058 25.7 1.9 30 40-69 104-133 (318)
325 PRK06203 aroB 3-dehydroquinate 36.3 47 0.001 25.2 3.2 31 35-65 89-124 (389)
326 cd06351 PBP1_iGluR_N_LIVBP_lik 36.2 73 0.0016 22.1 4.0 38 28-65 62-99 (328)
327 PRK05583 ribosomal protein L7A 36.0 71 0.0015 19.8 3.5 34 29-62 33-68 (104)
328 TIGR01662 HAD-SF-IIIA HAD-supe 35.9 48 0.001 20.3 2.8 24 40-63 28-51 (132)
329 COG1830 FbaB DhnA-type fructos 35.8 53 0.0011 24.1 3.2 29 37-65 127-157 (265)
330 PRK09423 gldA glycerol dehydro 35.7 52 0.0011 24.4 3.4 28 38-65 69-97 (366)
331 TIGR02402 trehalose_TreZ malto 35.7 51 0.0011 26.2 3.4 22 37-58 157-178 (542)
332 TIGR00222 panB 3-methyl-2-oxob 35.6 1.4E+02 0.003 21.8 5.4 42 27-70 171-212 (263)
333 TIGR00789 flhB_rel flhB C-term 35.4 76 0.0016 18.9 3.4 28 30-58 18-45 (82)
334 PRK11557 putative DNA-binding 35.4 71 0.0015 22.5 3.9 29 35-63 184-212 (278)
335 PRK07309 aromatic amino acid a 35.3 51 0.0011 24.4 3.2 21 39-59 185-205 (391)
336 PF12694 MoCo_carrier: Putativ 35.2 55 0.0012 21.9 3.0 32 30-61 92-123 (145)
337 PF10096 DUF2334: Uncharacteri 35.2 50 0.0011 23.3 3.1 20 37-56 13-32 (243)
338 PRK13237 tyrosine phenol-lyase 35.1 49 0.0011 26.0 3.2 26 35-60 193-218 (460)
339 TIGR01489 DKMTPPase-SF 2,3-dik 35.0 49 0.0011 21.2 2.8 23 41-63 76-98 (188)
340 PRK08247 cystathionine gamma-s 35.0 67 0.0014 23.7 3.8 22 38-59 151-172 (366)
341 PF07733 DNA_pol3_alpha: Bacte 34.9 22 0.00047 27.5 1.2 24 41-64 45-69 (426)
342 TIGR03128 RuMP_HxlA 3-hexulose 34.8 76 0.0017 21.2 3.8 31 28-58 75-107 (206)
343 PRK12414 putative aminotransfe 34.8 50 0.0011 24.3 3.1 20 39-58 181-200 (384)
344 COG0046 PurL Phosphoribosylfor 34.7 43 0.00094 28.0 2.9 31 32-65 329-359 (743)
345 cd06534 ALDH-SF NAD(P)+-depend 34.7 1E+02 0.0022 22.5 4.8 37 30-66 172-208 (367)
346 PRK10653 D-ribose transporter 34.7 90 0.0019 21.7 4.3 32 30-61 83-115 (295)
347 PRK05301 pyrroloquinoline quin 34.7 1.6E+02 0.0035 21.8 5.8 31 28-58 157-187 (378)
348 PRK06225 aspartate aminotransf 34.6 53 0.0011 24.0 3.2 21 38-58 175-195 (380)
349 PRK14465 ribosomal RNA large s 34.6 1.2E+02 0.0027 22.8 5.2 63 3-67 269-333 (342)
350 cd06347 PBP1_ABC_ligand_bindin 34.6 77 0.0017 22.1 4.0 33 29-61 191-223 (334)
351 PRK11892 pyruvate dehydrogenas 34.6 77 0.0017 24.8 4.2 28 31-58 281-308 (464)
352 cd06341 PBP1_ABC_ligand_bindin 34.6 79 0.0017 22.4 4.1 31 29-59 188-218 (341)
353 cd08199 EEVS 2-epi-5-epi-valio 34.4 62 0.0014 24.2 3.6 28 37-64 68-100 (354)
354 TIGR01227 hutG formimidoylglut 34.4 28 0.0006 25.4 1.7 31 39-69 97-127 (307)
355 PRK01722 formimidoylglutamase; 34.3 27 0.00059 25.5 1.6 31 39-69 103-133 (320)
356 TIGR03581 EF_0839 conserved hy 34.2 38 0.00082 24.4 2.3 24 37-60 161-184 (236)
357 COG1454 EutG Alcohol dehydroge 34.1 56 0.0012 25.0 3.3 28 38-65 71-99 (377)
358 PRK09982 universal stress prot 34.1 53 0.0011 20.6 2.8 22 42-63 92-113 (142)
359 PF13344 Hydrolase_6: Haloacid 34.1 76 0.0016 19.1 3.4 26 41-66 18-43 (101)
360 PF09286 Pro-kuma_activ: Pro-k 34.0 78 0.0017 20.1 3.6 24 38-61 60-83 (143)
361 PF09673 TrbC_Ftype: Type-F co 34.0 72 0.0016 19.9 3.3 26 39-64 10-35 (113)
362 COG4229 Predicted enolase-phos 34.0 67 0.0014 22.8 3.4 24 41-64 107-130 (229)
363 PF01855 POR_N: Pyruvate flavo 34.0 72 0.0016 22.5 3.7 36 30-65 118-157 (230)
364 cd06338 PBP1_ABC_ligand_bindin 33.9 74 0.0016 22.5 3.8 36 29-64 71-106 (345)
365 cd06308 PBP1_sensor_kinase_lik 33.9 79 0.0017 21.4 3.8 34 29-62 56-90 (270)
366 PLN02954 phosphoserine phospha 33.7 62 0.0013 21.6 3.3 26 40-65 87-112 (224)
367 cd06309 PBP1_YtfQ_like Peripla 33.7 65 0.0014 21.9 3.4 33 30-62 56-89 (273)
368 cd06345 PBP1_ABC_ligand_bindin 33.7 92 0.002 22.2 4.3 36 29-64 67-102 (344)
369 cd04726 KGPDC_HPS 3-Keto-L-gul 33.7 97 0.0021 20.5 4.2 38 28-65 76-117 (202)
370 PRK09147 succinyldiaminopimela 33.7 48 0.001 24.4 2.9 20 38-57 184-203 (396)
371 KOG1615|consensus 33.7 58 0.0013 23.2 3.1 24 40-63 91-114 (227)
372 PRK11302 DNA-binding transcrip 33.6 75 0.0016 22.3 3.8 28 34-61 183-210 (284)
373 TIGR03639 cas1_NMENI CRISPR-as 33.6 63 0.0014 23.4 3.4 38 33-70 39-76 (278)
374 TIGR03199 pucC xanthine dehydr 33.6 46 0.001 23.7 2.7 47 36-88 1-48 (264)
375 COG3797 Uncharacterized protei 33.5 96 0.0021 21.4 4.1 57 3-61 78-134 (178)
376 PHA01735 hypothetical protein 33.4 71 0.0015 18.9 3.0 24 37-60 30-53 (76)
377 PLN02607 1-aminocyclopropane-1 33.4 56 0.0012 25.0 3.3 19 39-57 219-237 (447)
378 TIGR02617 tnaA_trp_ase tryptop 33.4 59 0.0013 25.7 3.4 26 35-60 199-224 (467)
379 PRK05764 aspartate aminotransf 33.4 56 0.0012 23.9 3.2 20 39-58 183-202 (393)
380 PRK15447 putative protease; Pr 33.4 86 0.0019 22.8 4.1 22 37-58 45-66 (301)
381 PRK14460 ribosomal RNA large s 33.3 1.2E+02 0.0026 22.8 5.0 60 4-67 272-336 (354)
382 TIGR01681 HAD-SF-IIIC HAD-supe 33.3 71 0.0015 19.9 3.3 25 39-63 31-55 (128)
383 PLN02656 tyrosine transaminase 33.2 58 0.0013 24.3 3.3 19 39-57 188-206 (409)
384 cd08191 HHD 6-hydroxyhexanoate 33.2 69 0.0015 24.0 3.7 29 37-65 63-92 (386)
385 PF00543 P-II: Nitrogen regula 33.1 57 0.0012 19.7 2.7 35 31-65 2-37 (102)
386 PLN02591 tryptophan synthase 33.0 1.8E+02 0.004 20.8 6.2 31 30-60 107-138 (250)
387 COG2173 DdpX D-alanyl-D-alanin 33.0 55 0.0012 23.2 2.9 35 24-58 59-93 (211)
388 PRK13361 molybdenum cofactor b 33.0 1E+02 0.0022 22.5 4.5 28 32-59 161-189 (329)
389 PRK12313 glycogen branching en 33.0 59 0.0013 26.2 3.4 23 37-59 217-239 (633)
390 PRK00366 ispG 4-hydroxy-3-meth 32.9 67 0.0015 24.6 3.5 30 26-58 105-135 (360)
391 PRK12315 1-deoxy-D-xylulose-5- 32.8 86 0.0019 25.1 4.3 30 31-60 404-434 (581)
392 cd01450 vWFA_subfamily_ECM Von 32.8 52 0.0011 20.3 2.6 24 40-63 119-142 (161)
393 PRK10933 trehalose-6-phosphate 32.8 60 0.0013 25.8 3.4 22 37-58 78-99 (551)
394 cd08198 DHQS-like2 Dehydroquin 32.7 68 0.0015 24.3 3.6 31 35-65 77-112 (369)
395 TIGR00160 MGSA methylglyoxal s 32.7 30 0.00065 23.0 1.5 18 40-57 91-108 (143)
396 PF01867 Cas_Cas1: CRISPR asso 32.6 33 0.00071 24.5 1.8 32 39-70 44-75 (282)
397 TIGR00036 dapB dihydrodipicoli 32.5 1.5E+02 0.0032 21.1 5.1 35 29-63 68-102 (266)
398 PTZ00376 aspartate aminotransf 32.5 53 0.0011 24.4 2.9 20 38-57 194-213 (404)
399 cd06305 PBP1_methylthioribose_ 32.5 1E+02 0.0022 20.8 4.2 34 29-62 55-89 (273)
400 cd06346 PBP1_ABC_ligand_bindin 32.5 1E+02 0.0022 21.7 4.4 33 29-61 192-224 (312)
401 PRK08960 hypothetical protein; 32.4 61 0.0013 23.8 3.3 20 39-58 184-203 (387)
402 cd06347 PBP1_ABC_ligand_bindin 32.3 75 0.0016 22.2 3.6 34 29-62 67-100 (334)
403 PRK13238 tnaA tryptophanase/L- 32.3 58 0.0013 25.2 3.2 26 35-60 193-218 (460)
404 PRK07064 hypothetical protein; 32.3 1.5E+02 0.0032 23.1 5.4 26 38-63 189-214 (544)
405 PF01976 DUF116: Protein of un 32.3 48 0.001 22.1 2.4 25 41-65 74-98 (158)
406 TIGR00287 cas1 CRISPR-associat 32.3 46 0.001 24.3 2.6 34 37-70 42-75 (323)
407 cd08169 DHQ-like Dehydroquinat 32.3 71 0.0015 23.7 3.6 29 37-65 64-96 (344)
408 PRK13602 putative ribosomal pr 32.3 1E+02 0.0022 18.2 3.6 33 29-61 27-61 (82)
409 TIGR01265 tyr_nico_aTase tyros 32.2 61 0.0013 24.0 3.3 21 38-58 187-207 (403)
410 cd06338 PBP1_ABC_ligand_bindin 32.2 1.2E+02 0.0025 21.5 4.6 31 29-59 196-226 (345)
411 cd05009 SIS_GlmS_GlmD_2 SIS (S 32.1 76 0.0016 19.7 3.3 34 30-63 64-99 (153)
412 PTZ00365 60S ribosomal protein 32.1 70 0.0015 23.5 3.4 35 30-64 149-186 (266)
413 PF04472 DUF552: Protein of un 32.1 59 0.0013 18.5 2.5 21 32-52 2-22 (73)
414 PRK07777 aminotransferase; Val 32.0 62 0.0013 23.7 3.2 21 38-58 177-197 (387)
415 PRK06108 aspartate aminotransf 32.0 61 0.0013 23.5 3.2 21 38-58 176-196 (382)
416 cd06323 PBP1_ribose_binding Pe 31.9 1.1E+02 0.0025 20.3 4.4 33 29-61 55-88 (268)
417 PLN02450 1-aminocyclopropane-1 31.9 60 0.0013 25.0 3.2 20 38-57 209-228 (468)
418 PRK11337 DNA-binding transcrip 31.9 92 0.002 22.1 4.0 28 36-63 197-224 (292)
419 cd06317 PBP1_ABC_sugar_binding 31.9 83 0.0018 21.2 3.7 33 29-61 56-89 (275)
420 PLN02368 alanine transaminase 31.8 57 0.0012 24.7 3.0 20 38-57 228-247 (407)
421 PF11116 DUF2624: Protein of u 31.8 33 0.00072 20.9 1.5 17 42-58 17-33 (85)
422 PRK06702 O-acetylhomoserine am 31.8 48 0.001 25.6 2.7 28 32-59 152-183 (432)
423 PRK05444 1-deoxy-D-xylulose-5- 31.8 90 0.002 24.8 4.3 33 32-64 407-440 (580)
424 PRK07681 aspartate aminotransf 31.8 59 0.0013 24.0 3.1 19 39-57 185-203 (399)
425 cd03062 TRX_Fd_Sucrase TRX-lik 31.7 84 0.0018 19.0 3.3 27 30-56 54-89 (97)
426 cd01536 PBP1_ABC_sugar_binding 31.6 1.2E+02 0.0027 20.0 4.5 35 29-63 55-90 (267)
427 cd06502 TA_like Low-specificit 31.6 63 0.0014 22.8 3.1 21 38-58 144-164 (338)
428 PRK10785 maltodextrin glucosid 31.6 64 0.0014 25.9 3.4 22 37-58 223-244 (598)
429 PRK15482 transcriptional regul 31.5 94 0.002 22.0 4.0 32 32-63 188-219 (285)
430 cd06332 PBP1_aromatic_compound 31.4 90 0.0019 21.8 3.9 36 29-64 65-100 (333)
431 COG0296 GlgB 1,4-alpha-glucan 31.3 64 0.0014 26.4 3.4 29 30-58 200-232 (628)
432 PRK05402 glycogen branching en 31.3 64 0.0014 26.5 3.4 23 37-59 312-334 (726)
433 cd06334 PBP1_ABC_ligand_bindin 31.3 1.3E+02 0.0028 21.9 4.8 33 29-61 195-227 (351)
434 PF01094 ANF_receptor: Recepto 31.3 1E+02 0.0022 21.5 4.1 38 28-65 50-87 (348)
435 PF07905 PucR: Purine cataboli 31.2 58 0.0012 20.4 2.6 21 43-63 89-109 (123)
436 PRK09265 aminotransferase AlaT 31.2 65 0.0014 23.8 3.2 20 38-57 186-205 (404)
437 COG0052 RpsB Ribosomal protein 31.1 99 0.0021 22.5 4.0 29 30-59 157-185 (252)
438 PRK08636 aspartate aminotransf 31.0 65 0.0014 23.9 3.2 20 38-57 193-212 (403)
439 PRK08912 hypothetical protein; 31.0 64 0.0014 23.7 3.1 20 38-57 177-196 (387)
440 TIGR01515 branching_enzym alph 30.9 66 0.0014 25.9 3.4 23 37-59 203-225 (613)
441 PRK14459 ribosomal RNA large s 30.8 1.4E+02 0.0031 22.8 5.0 65 3-67 295-363 (373)
442 PRK08175 aminotransferase; Val 30.8 64 0.0014 23.8 3.1 21 38-58 182-202 (395)
443 PRK05839 hypothetical protein; 30.7 65 0.0014 23.6 3.2 20 38-57 173-192 (374)
444 PRK01278 argD acetylornithine 30.7 68 0.0015 23.6 3.2 22 37-58 193-214 (389)
445 PF00155 Aminotran_1_2: Aminot 30.7 69 0.0015 22.9 3.2 22 38-59 166-187 (363)
446 TIGR01504 glyox_carbo_lig glyo 30.7 1.8E+02 0.0039 23.2 5.7 29 38-66 188-216 (588)
447 PF00491 Arginase: Arginase fa 30.6 63 0.0014 22.8 3.0 31 39-69 66-96 (277)
448 PRK05957 aspartate aminotransf 30.6 67 0.0014 23.7 3.2 20 38-57 178-197 (389)
449 TIGR03822 AblA_like_2 lysine-2 30.6 82 0.0018 23.1 3.7 29 38-66 120-149 (321)
450 COG0826 Collagenase and relate 30.6 78 0.0017 23.8 3.6 27 37-63 46-72 (347)
451 PF03460 NIR_SIR_ferr: Nitrite 30.5 71 0.0015 17.5 2.7 33 30-65 17-49 (69)
452 PLN00143 tyrosine/nicotianamin 30.5 68 0.0015 23.9 3.3 20 38-57 188-207 (409)
453 TIGR03540 DapC_direct LL-diami 30.5 61 0.0013 23.7 3.0 20 38-57 182-201 (383)
454 cd02193 PurL Formylglycinamide 30.4 77 0.0017 22.5 3.4 31 31-61 241-271 (272)
455 PRK13601 putative L7Ae-like ri 30.4 1.1E+02 0.0024 18.2 3.6 33 29-61 24-58 (82)
456 PRK12381 bifunctional succinyl 30.3 66 0.0014 24.0 3.2 22 37-58 201-222 (406)
457 PRK07050 cystathionine beta-ly 30.3 1E+02 0.0022 23.2 4.1 21 38-58 165-185 (394)
458 PRK15395 methyl-galactoside AB 30.3 1.3E+02 0.0028 21.6 4.6 35 29-63 81-116 (330)
459 PRK07550 hypothetical protein; 30.2 66 0.0014 23.5 3.1 23 38-60 181-203 (386)
460 PRK07568 aspartate aminotransf 30.1 68 0.0015 23.4 3.2 20 38-57 180-199 (397)
461 PRK06348 aspartate aminotransf 30.0 68 0.0015 23.6 3.2 20 38-57 180-199 (384)
462 TIGR01990 bPGM beta-phosphoglu 30.0 67 0.0015 20.6 2.9 26 39-64 89-114 (185)
463 PRK07226 fructose-bisphosphate 29.9 77 0.0017 22.5 3.3 21 39-59 125-145 (267)
464 COG0821 gcpE 1-hydroxy-2-methy 29.9 57 0.0012 24.9 2.7 30 26-58 99-128 (361)
465 TIGR03638 cas1_ECOLI CRISPR-as 29.9 72 0.0016 22.9 3.2 28 37-64 52-79 (269)
466 PRK13805 bifunctional acetalde 29.9 77 0.0017 26.5 3.7 29 37-65 523-552 (862)
467 PRK07337 aminotransferase; Val 29.8 73 0.0016 23.4 3.3 21 38-58 181-201 (388)
468 PRK08068 transaminase; Reviewe 29.7 67 0.0015 23.6 3.1 20 38-57 185-204 (389)
469 PF13361 UvrD_C: UvrD-like hel 29.7 90 0.002 21.8 3.6 33 30-62 78-110 (351)
470 TIGR01140 L_thr_O3P_dcar L-thr 29.7 68 0.0015 23.1 3.1 24 38-61 143-166 (330)
471 PLN02187 rooty/superroot1 29.7 70 0.0015 24.5 3.3 20 38-57 222-241 (462)
472 PTZ00433 tyrosine aminotransfe 29.7 70 0.0015 23.8 3.2 20 38-57 195-214 (412)
473 cd00396 PurM-like AIR (aminoim 29.6 1.1E+02 0.0023 20.8 3.9 29 32-60 193-221 (222)
474 cd06319 PBP1_ABC_sugar_binding 29.6 1E+02 0.0022 20.8 3.8 34 29-62 55-89 (277)
475 PRK09440 avtA valine--pyruvate 29.6 73 0.0016 23.6 3.3 20 38-57 197-216 (416)
476 KOG4058|consensus 29.6 74 0.0016 21.9 3.0 31 34-64 53-84 (199)
477 cd00308 enolase_like Enolase-s 29.5 77 0.0017 21.7 3.2 25 37-61 180-204 (229)
478 PRK06207 aspartate aminotransf 29.5 73 0.0016 23.8 3.3 20 38-57 196-215 (405)
479 PLN02428 lipoic acid synthase 29.5 85 0.0019 23.8 3.6 26 36-61 258-283 (349)
480 PRK09505 malS alpha-amylase; R 29.5 72 0.0016 26.3 3.4 22 37-58 289-310 (683)
481 TIGR00338 serB phosphoserine p 29.4 82 0.0018 21.0 3.3 25 40-64 88-112 (219)
482 PF05378 Hydant_A_N: Hydantoin 29.3 1.5E+02 0.0032 19.9 4.5 36 31-66 125-160 (176)
483 PF00702 Hydrolase: haloacid d 29.3 42 0.0009 21.9 1.8 25 39-63 129-153 (215)
484 cd00344 FBP_aldolase_I Fructos 29.3 37 0.00081 25.6 1.7 54 1-54 110-171 (328)
485 COG1066 Sms Predicted ATP-depe 29.3 84 0.0018 24.8 3.6 31 30-60 183-217 (456)
486 PRK09276 LL-diaminopimelate am 29.2 74 0.0016 23.3 3.2 20 38-57 184-203 (385)
487 PF03447 NAD_binding_3: Homose 29.2 1.2E+02 0.0025 18.4 3.7 33 29-61 59-91 (117)
488 PRK09701 D-allose transporter 29.2 1.4E+02 0.003 21.1 4.6 35 29-63 82-117 (311)
489 PRK07590 L,L-diaminopimelate a 29.2 67 0.0014 23.9 3.0 19 39-57 195-213 (409)
490 COG4799 Acetyl-CoA carboxylase 29.2 74 0.0016 25.6 3.3 36 31-66 337-372 (526)
491 TIGR01264 tyr_amTase_E tyrosin 29.1 75 0.0016 23.4 3.3 20 38-57 186-205 (401)
492 PRK06358 threonine-phosphate d 29.1 75 0.0016 23.1 3.2 20 38-57 159-178 (354)
493 PRK13655 phosphoenolpyruvate c 29.0 1E+02 0.0023 24.5 4.1 29 40-68 221-250 (494)
494 PRK00311 panB 3-methyl-2-oxobu 29.0 1.9E+02 0.0042 20.9 5.3 41 28-70 173-213 (264)
495 PF01983 CofC: Guanylyl transf 29.0 11 0.00025 26.5 -1.1 37 30-66 89-131 (217)
496 cd01298 ATZ_TRZ_like TRZ/ATZ f 28.9 96 0.0021 22.6 3.8 27 37-63 191-217 (411)
497 PRK10355 xylF D-xylose transpo 28.9 1.4E+02 0.0029 21.6 4.5 33 29-61 81-114 (330)
498 COG2810 Predicted type IV rest 28.8 76 0.0017 23.3 3.1 29 38-66 82-110 (284)
499 TIGR03539 DapC_actino succinyl 28.8 74 0.0016 23.1 3.1 20 38-57 160-179 (357)
500 PRK07865 N-succinyldiaminopime 28.7 78 0.0017 23.0 3.2 19 39-57 167-185 (364)
No 1
>PRK11183 D-lactate dehydrogenase; Provisional
Probab=99.51 E-value=6.2e-14 Score=108.76 Aligned_cols=64 Identities=17% Similarity=0.111 Sum_probs=55.2
Q ss_pred eecCccEEEEcCCHHHHHHHHHHHHhCCCcEEEEcCCCCCCCCcccCCC-CccceEEEEcCCCCC
Q psy4717 26 IFIGTRYWCITESTEDVEKVVQVAHDHNLVIIPFGGGTNVTGAVACPEN-ELRTIISLDTSQMQS 89 (90)
Q Consensus 26 ~~~~p~~vv~P~s~~~v~~vv~~a~~~~i~v~~~G~G~n~~~~~~~~~~-~~~~gvvIdl~~m~~ 89 (90)
+...|.+||+|+|++||+++|++|+++++|++|+|+||++.||+.+..+ ..+++|+|||++||+
T Consensus 35 ~~g~P~AVV~P~SteEVa~IVklC~e~~vPVIPRGgGTGLtGGAvP~~~~~dR~gVVIsl~RMNr 99 (564)
T PRK11183 35 GQGDALAVVFPGTLLELWRVLQACVAADKIIIMQAANTGLTGGSTPNGNDYDRDIVIISTLRLDK 99 (564)
T ss_pred cCCCCCEEEecCCHHHHHHHHHHHHHcCCeEEEeCCCcccccCcccCCCCCcCCEEEEEhhHcCC
Confidence 3456999999999999999999999999999999999999999974322 123489999999986
No 2
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=99.43 E-value=5.9e-13 Score=102.49 Aligned_cols=61 Identities=18% Similarity=0.292 Sum_probs=54.5
Q ss_pred eeecCccEEEEcCCHHHHHHHHHHHHhCCCcEEEEcCCCCCCCCcccCCCCccceEEEEcCCCCC
Q psy4717 25 AIFIGTRYWCITESTEDVEKVVQVAHDHNLVIIPFGGGTNVTGAVACPENELRTIISLDTSQMQS 89 (90)
Q Consensus 25 ~~~~~p~~vv~P~s~~~v~~vv~~a~~~~i~v~~~G~G~n~~~~~~~~~~~~~~gvvIdl~~m~~ 89 (90)
.++..|.+|++|+|++||+++|++|+++++|++|+|+|||+.++.. +.. +|++|||++||+
T Consensus 51 ~~~~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~rG~Gt~~~gg~~-~~~---~gividl~~ln~ 111 (499)
T PRK11230 51 AYRTRPLLVVLPKQMEQVQALLAVCHRLRVPVVARGAGTGLSGGAL-PLE---KGVLLVMARFNR 111 (499)
T ss_pred ccCCCCCEEEeeCCHHHHHHHHHHHHHcCCeEEEECCCcCcCCCcc-cCC---CcEEEEcccCCC
Confidence 3566799999999999999999999999999999999999988875 333 489999999986
No 3
>PLN02805 D-lactate dehydrogenase [cytochrome]
Probab=99.43 E-value=7.2e-13 Score=103.25 Aligned_cols=57 Identities=28% Similarity=0.482 Sum_probs=52.1
Q ss_pred CccEEEEcCCHHHHHHHHHHHHhCCCcEEEEcCCCCCCCCcccCCCCccceEEEEcCCCCC
Q psy4717 29 GTRYWCITESTEDVEKVVQVAHDHNLVIIPFGGGTNVTGAVACPENELRTIISLDTSQMQS 89 (90)
Q Consensus 29 ~p~~vv~P~s~~~v~~vv~~a~~~~i~v~~~G~G~n~~~~~~~~~~~~~~gvvIdl~~m~~ 89 (90)
.|.+|++|+|++||+++|++|+++++|++|+|+|||+.|++.+.+ +|++|||++||+
T Consensus 133 ~P~~Vv~P~s~eeV~~ivk~a~~~~ipv~prGgGts~~G~~~~~~----ggivIdl~~mn~ 189 (555)
T PLN02805 133 IPDVVVFPRSEEEVSKIVKSCNKYKVPIVPYGGATSIEGHTLAPH----GGVCIDMSLMKS 189 (555)
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHCCCcEEEECCCCCCCCCccCCC----CEEEEEccCCCC
Confidence 599999999999999999999999999999999999998875433 589999999986
No 4
>PF01565 FAD_binding_4: FAD binding domain This is only a subset of the Pfam family; InterPro: IPR006094 Various enzymes use FAD as a co-factor, most of these enzymes are oxygen-dependent oxidoreductases, containing a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. One of the enzymes Vanillyl-alcohol oxidase (VAO, 1.1.3.38 from EC) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110 []. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyses the oxidation of a wide variety of substrates, ranging from aromatic amines to 4-alkylphenols. ; GO: 0008762 UDP-N-acetylmuramate dehydrogenase activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZR6_A 3HSU_A 2AXR_A 3D2J_A 3D2H_A 3FW9_A 3FW8_A 3FW7_A 3GSY_A 3FWA_A ....
Probab=99.41 E-value=1.1e-12 Score=84.72 Aligned_cols=55 Identities=25% Similarity=0.364 Sum_probs=49.1
Q ss_pred ccEEEEcCCHHHHHHHHHHHHhCCCcEEEEcCCCCCCCCcccCCCCccceEEEEcCCCCC
Q psy4717 30 TRYWCITESTEDVEKVVQVAHDHNLVIIPFGGGTNVTGAVACPENELRTIISLDTSQMQS 89 (90)
Q Consensus 30 p~~vv~P~s~~~v~~vv~~a~~~~i~v~~~G~G~n~~~~~~~~~~~~~~gvvIdl~~m~~ 89 (90)
|++|++|++++||++++++|+++++++.++|+|||+.+... .. ++++|||++|++
T Consensus 1 P~~vv~P~s~~ev~~~v~~a~~~~~~v~~~g~G~~~~~~~~-~~----~~ivi~~~~l~~ 55 (139)
T PF01565_consen 1 PAAVVRPKSVEEVQAIVKFANENGVPVRVRGGGHSWTGQSS-DE----GGIVIDMSRLNK 55 (139)
T ss_dssp ESEEEEESSHHHHHHHHHHHHHTTSEEEEESSSTTSSSTTS-ST----TEEEEECTTCGC
T ss_pred CcEEEEeCCHHHHHHHHHHHHHcCCcEEEEcCCCCcccccc-cC----CcEEEeeccccc
Confidence 78999999999999999999999999999999999984442 22 599999999975
No 5
>COG0277 GlcD FAD/FMN-containing dehydrogenases [Energy production and conversion]
Probab=99.34 E-value=3.4e-12 Score=95.46 Aligned_cols=60 Identities=23% Similarity=0.429 Sum_probs=54.3
Q ss_pred eeecCccEEEEcCCHHHHHHHHHHHHhCCCcEEEEcCCCCCCCCcccCCCCccceEEEEcCCCCC
Q psy4717 25 AIFIGTRYWCITESTEDVEKVVQVAHDHNLVIIPFGGGTNVTGAVACPENELRTIISLDTSQMQS 89 (90)
Q Consensus 25 ~~~~~p~~vv~P~s~~~v~~vv~~a~~~~i~v~~~G~G~n~~~~~~~~~~~~~~gvvIdl~~m~~ 89 (90)
.++..|.+++.|+|++||++++++|+++++|++|+|+||++.++.. ++ + ||+|||++||+
T Consensus 27 ~~~~~p~~v~~p~s~~eV~~iv~~a~~~~~~v~prG~gts~~g~~~-~~-~---gvvl~l~~mn~ 86 (459)
T COG0277 27 VYRGLPLAVVFPKSEEEVAAILRLANENGIPVVPRGGGTSLSGGAV-PD-G---GVVLDLSRLNR 86 (459)
T ss_pred hhcCCCCEEEccCCHHHHHHHHHHHHHcCCeEEEECCCCCcccccc-CC-C---cEEEEchhhcc
Confidence 3556799999999999999999999999999999999999999886 54 2 89999999986
No 6
>PRK12436 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.31 E-value=5e-12 Score=92.32 Aligned_cols=64 Identities=20% Similarity=0.410 Sum_probs=54.3
Q ss_pred ccceeeecC--ccEEEEcCCHHHHHHHHHHHHhCCCcEEEEcCCCCCCCCcccCCCCccceEEEEcCCCCC
Q psy4717 21 VNHQAIFIG--TRYWCITESTEDVEKVVQVAHDHNLVIIPFGGGTNVTGAVACPENELRTIISLDTSQMQS 89 (90)
Q Consensus 21 ~~~~~~~~~--p~~vv~P~s~~~v~~vv~~a~~~~i~v~~~G~G~n~~~~~~~~~~~~~~gvvIdl~~m~~ 89 (90)
..|+.++++ |++++.|+|++||++++++|+++++|++++|+|||+. +.+++++ |++|+|++|++
T Consensus 26 ~~~tt~~igg~a~~vv~p~~~edv~~~l~~a~~~~ip~~v~GgGSNll----~~d~g~~-GvvI~l~~l~~ 91 (305)
T PRK12436 26 KNHTHIKVGGKADVFVAPTNYDEIQEVIKYANKYNIPVTFLGNGSNVI----IKDGGIR-GITVSLIHITG 91 (305)
T ss_pred hhccCcccCceEEEEEecCCHHHHHHHHHHHHHcCCCEEEEcCCeEEE----EeCCCee-EEEEEeCCcCc
Confidence 345666655 9999999999999999999999999999999999996 3565554 89999987764
No 7
>PRK14652 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.28 E-value=1.3e-11 Score=90.07 Aligned_cols=61 Identities=15% Similarity=0.305 Sum_probs=53.5
Q ss_pred ccceeeecC--ccEEEEcCCHHHHHHHHHHHHhCCCcEEEEcCCCCCCCCcccCCCCccceEEEEcCC
Q psy4717 21 VNHQAIFIG--TRYWCITESTEDVEKVVQVAHDHNLVIIPFGGGTNVTGAVACPENELRTIISLDTSQ 86 (90)
Q Consensus 21 ~~~~~~~~~--p~~vv~P~s~~~v~~vv~~a~~~~i~v~~~G~G~n~~~~~~~~~~~~~~gvvIdl~~ 86 (90)
.+|++|+++ |++++.|+|++||++++++|+++++|++++|+|||+. .++++++ |++|++++
T Consensus 25 ~~~tt~~igg~a~~~v~p~~~edl~~~v~~a~~~~ip~~vlGgGSNll----v~d~g~~-gvVI~l~~ 87 (302)
T PRK14652 25 APRTAVRVGGPADLLVRPADPDALSALLRAVRELGVPLSILGGGANTL----VADAGVR-GVVLRLPQ 87 (302)
T ss_pred ccccEeecCCcceEEEEcCCHHHHHHHHHHHHHCCCcEEEEcCCccee----ecCCCEe-eEEEEecC
Confidence 467888876 8999999999999999999999999999999999995 3566554 89999976
No 8
>PRK13906 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.27 E-value=1.2e-11 Score=90.38 Aligned_cols=64 Identities=19% Similarity=0.318 Sum_probs=54.9
Q ss_pred ccceeeecC--ccEEEEcCCHHHHHHHHHHHHhCCCcEEEEcCCCCCCCCcccCCCCccceEEEEcCCCCC
Q psy4717 21 VNHQAIFIG--TRYWCITESTEDVEKVVQVAHDHNLVIIPFGGGTNVTGAVACPENELRTIISLDTSQMQS 89 (90)
Q Consensus 21 ~~~~~~~~~--p~~vv~P~s~~~v~~vv~~a~~~~i~v~~~G~G~n~~~~~~~~~~~~~~gvvIdl~~m~~ 89 (90)
..+++++++ |++++.|++++||++++++|+++++|++++|+|||+. +.+++++ |++|++++|++
T Consensus 26 ~~~tt~~iGG~A~~~v~p~~~edv~~~v~~a~~~~ip~~vlGgGSNll----~~d~g~~-GvvI~l~~l~~ 91 (307)
T PRK13906 26 KRYTYTKTGGNADFYITPTKNEEVQAVVKYAYQNEIPVTYLGNGSNII----IREGGIR-GIVISLLSLDH 91 (307)
T ss_pred ccceEcCcCceeEEEEEcCCHHHHHHHHHHHHHcCCCEEEEcCceeEe----ecCCCcc-eEEEEecCccc
Confidence 356777765 8999999999999999999999999999999999996 3555554 99999988864
No 9
>TIGR00179 murB UDP-N-acetylenolpyruvoylglucosamine reductase. This model describes MurB, UDP-N-acetylenolpyruvoylglucosamine reductase, which is also called UDP-N-acetylmuramate dehydrogenase. It is part of the pathway for the biosynthesis of the UDP-N-acetylmuramoyl-pentapeptide that is a precursor of bacterial peptidoglycan.
Probab=99.26 E-value=1.6e-11 Score=88.83 Aligned_cols=63 Identities=17% Similarity=0.225 Sum_probs=53.4
Q ss_pred cceeeecC--ccEEEEcCCHHHHHHHHHHHHhCCCcEEEEcCCCCCCCCcccCCCCccceEEEEcCCCCC
Q psy4717 22 NHQAIFIG--TRYWCITESTEDVEKVVQVAHDHNLVIIPFGGGTNVTGAVACPENELRTIISLDTSQMQS 89 (90)
Q Consensus 22 ~~~~~~~~--p~~vv~P~s~~~v~~vv~~a~~~~i~v~~~G~G~n~~~~~~~~~~~~~~gvvIdl~~m~~ 89 (90)
++++++++ |++++.|+|++||++++++|+++++|++++|+|||+.. ++.+. +|++|++.+|+.
T Consensus 3 ~~tt~~igg~a~~~v~p~s~edl~~~l~~a~~~~~p~~vlGgGSNll~----~d~~~-~gvvi~l~~~~~ 67 (284)
T TIGR00179 3 EFTTYKIGGNARHIVCPESIEQLVNVLDNAKEEDQPLLILGEGSNLLI----LDDGR-GGVIINLGKGID 67 (284)
T ss_pred CcceeecCceeeEEEEeCCHHHHHHHHHHHHHcCCCEEEEecceEEEE----ccCCc-CeEEEECCCCce
Confidence 35778766 89999999999999999999999999999999999973 33333 589999988753
No 10
>PRK13905 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.24 E-value=2.4e-11 Score=88.24 Aligned_cols=63 Identities=14% Similarity=0.388 Sum_probs=53.8
Q ss_pred cceeeecC--ccEEEEcCCHHHHHHHHHHHHhCCCcEEEEcCCCCCCCCcccCCCCccceEEEEcCC-CCC
Q psy4717 22 NHQAIFIG--TRYWCITESTEDVEKVVQVAHDHNLVIIPFGGGTNVTGAVACPENELRTIISLDTSQ-MQS 89 (90)
Q Consensus 22 ~~~~~~~~--p~~vv~P~s~~~v~~vv~~a~~~~i~v~~~G~G~n~~~~~~~~~~~~~~gvvIdl~~-m~~ 89 (90)
++++|+++ |++++.|+|++||++++++|+++++|+.++|+|||+. ..+++++ |++|++++ |+.
T Consensus 21 ~~~t~~igg~a~~vv~P~s~edv~~~v~~a~~~~~p~~v~GgGsnll----~~d~g~~-gvvI~l~~~l~~ 86 (298)
T PRK13905 21 RYTSFRVGGPADYLVEPADIEDLQEFLKLLKENNIPVTVLGNGSNLL----VRDGGIR-GVVIRLGKGLNE 86 (298)
T ss_pred ccceeecCceEeEEEeCCCHHHHHHHHHHHHHcCCCEEEEeCCceEE----ecCCCcc-eEEEEecCCcce
Confidence 55778876 8999999999999999999999999999999999985 2444443 89999987 763
No 11
>TIGR00387 glcD glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity.
Probab=99.22 E-value=1.6e-11 Score=92.31 Aligned_cols=53 Identities=26% Similarity=0.487 Sum_probs=47.7
Q ss_pred EEEcCCHHHHHHHHHHHHhCCCcEEEEcCCCCCCCCcccCCCCccceEEEEcCCCCC
Q psy4717 33 WCITESTEDVEKVVQVAHDHNLVIIPFGGGTNVTGAVACPENELRTIISLDTSQMQS 89 (90)
Q Consensus 33 vv~P~s~~~v~~vv~~a~~~~i~v~~~G~G~n~~~~~~~~~~~~~~gvvIdl~~m~~ 89 (90)
|++|+|++||++++++|+++++|++|+|+|||+.++..+.+ ++++|||++||+
T Consensus 1 Vv~P~s~eev~~iv~~a~~~~i~v~~~G~Gt~~~g~~~~~~----~~vvidl~~mn~ 53 (413)
T TIGR00387 1 VVFPKNTEQVARILKLCHEHRIPIVPRGAGTGLSGGALPEE----GGLVLVFKHMNK 53 (413)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCcEEEECCCCCCCCCccCCC----CeEEEEhHHcCc
Confidence 57899999999999999999999999999999988876443 589999999986
No 12
>KOG1233|consensus
Probab=99.21 E-value=1.7e-11 Score=92.64 Aligned_cols=86 Identities=40% Similarity=0.590 Sum_probs=72.6
Q ss_pred cchhHHHHHHHHhccCccc----cceeeecCccEEEEcCCHHHHHHHHHHHHhCCCcEEEEcCCCCCCCCcccCCCCccc
Q psy4717 3 STEDVEKVVQVAHDHNLVV----NHQAIFIGTRYWCITESTEDVEKVVQVAHDHNLVIIPFGGGTNVTGAVACPENELRT 78 (90)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~p~~vv~P~s~~~v~~vv~~a~~~~i~v~~~G~G~n~~~~~~~~~~~~~~ 78 (90)
|-|..|||.+ .|+|.++. .+..|+.-|+.|++|++.+||.++++.|.+|++-++|+|||++.+++..+|..+-+.
T Consensus 131 S~Ea~dRl~R-~HGhtlhdi~~Lregkf~RiPDiVvWP~chdevVkiv~lA~khN~~iiPiGGGTSVs~al~cP~~E~R~ 209 (613)
T KOG1233|consen 131 SNEARDRLMR-GHGHTLHDIINLREGKFPRIPDIVVWPKCHDEVVKIVELAMKHNCAIIPIGGGTSVSNALDCPETEKRA 209 (613)
T ss_pred chhHHHHHHh-hcCchHHHHHHHhcCccCCCCceEecccchHHHHHHHHHHhhcCeEEEEeCCcccccccccCCccccee
Confidence 5688999998 99998761 122233449999999999999999999999999999999999999999888877666
Q ss_pred eEEEEcCCCCC
Q psy4717 79 IISLDTSQMQS 89 (90)
Q Consensus 79 gvvIdl~~m~~ 89 (90)
-+.+|++.||+
T Consensus 210 iislDtsqmnr 220 (613)
T KOG1233|consen 210 IISLDTSQMNR 220 (613)
T ss_pred EEEecHHhhhh
Confidence 67888888885
No 13
>PLN02441 cytokinin dehydrogenase
Probab=99.21 E-value=7e-11 Score=91.73 Aligned_cols=61 Identities=16% Similarity=0.223 Sum_probs=53.3
Q ss_pred eeeecCccEEEEcCCHHHHHHHHHHHH--hCCCcEEEEcCCCCCCCCcccCCCCccceEEEEcCCCCC
Q psy4717 24 QAIFIGTRYWCITESTEDVEKVVQVAH--DHNLVIIPFGGGTNVTGAVACPENELRTIISLDTSQMQS 89 (90)
Q Consensus 24 ~~~~~~p~~vv~P~s~~~v~~vv~~a~--~~~i~v~~~G~G~n~~~~~~~~~~~~~~gvvIdl~~m~~ 89 (90)
..++..|.+|++|+|++||+++|++|+ ++++++.++|+||++.+++. .+ +|++|||++||+
T Consensus 59 ~~~~~~P~aVv~P~S~eDVa~iVr~A~~~~~~~~V~~rGgGHS~~G~a~-~~----~GivIdms~Ln~ 121 (525)
T PLN02441 59 NLVHSLPAAVLYPSSVEDIASLVRAAYGSSSPLTVAARGHGHSLNGQAQ-AP----GGVVVDMRSLRG 121 (525)
T ss_pred cccCCCCCEEEeCCCHHHHHHHHHHHhhccCCceEEEECCCcCCCCCcc-CC----CeEEEECCCCCC
Confidence 336677999999999999999999997 67999999999999987774 43 489999999986
No 14
>PRK14649 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.16 E-value=1e-10 Score=85.10 Aligned_cols=62 Identities=16% Similarity=0.260 Sum_probs=53.7
Q ss_pred ccceeeecC--ccEEEEcCCHHHHHHHHHHHHhCCCcEEEEcCCCCCCCCcccCCCCccceEEEEcCCC
Q psy4717 21 VNHQAIFIG--TRYWCITESTEDVEKVVQVAHDHNLVIIPFGGGTNVTGAVACPENELRTIISLDTSQM 87 (90)
Q Consensus 21 ~~~~~~~~~--p~~vv~P~s~~~v~~vv~~a~~~~i~v~~~G~G~n~~~~~~~~~~~~~~gvvIdl~~m 87 (90)
.++++|+++ +++++.|++++|+++++++|+++++|++++|+|||+. +.|++++ |++|+++++
T Consensus 10 ~~~tt~~iGg~a~~~v~p~~~~dl~~~l~~~~~~~ip~~vlG~GSNlL----~~d~g~~-GvVI~l~~~ 73 (295)
T PRK14649 10 APYTSWRIGGPARYFVEPTTPDEAIAAAAWAEQRQLPLFWLGGGSNLL----VRDEGFD-GLVARYRGQ 73 (295)
T ss_pred ccccEeeeCceeeEEEEcCCHHHHHHHHHHHHHCCCCEEEEecceeEE----EeCCCcC-eEEEEecCC
Confidence 356778877 8999999999999999999999999999999999996 4566564 999999764
No 15
>PRK14653 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.11 E-value=2e-10 Score=83.77 Aligned_cols=63 Identities=19% Similarity=0.372 Sum_probs=54.5
Q ss_pred ccceeeecC--ccEEEEcCCHHHHHHHHHHHHhCCCcEEEEcCCCCCCCCcccCCCCccceEEEEcCCCCC
Q psy4717 21 VNHQAIFIG--TRYWCITESTEDVEKVVQVAHDHNLVIIPFGGGTNVTGAVACPENELRTIISLDTSQMQS 89 (90)
Q Consensus 21 ~~~~~~~~~--p~~vv~P~s~~~v~~vv~~a~~~~i~v~~~G~G~n~~~~~~~~~~~~~~gvvIdl~~m~~ 89 (90)
.+|++|+++ +++++.|++++|+++++++|++ ++|++++|+|||+. ..|++++ |+||.+.+|+.
T Consensus 23 ~~~tt~~iGG~A~~~v~p~s~eel~~~~~~~~~-~~p~~vlG~GSNlL----v~d~g~~-gvVI~l~~~~~ 87 (297)
T PRK14653 23 KCHVSFKIGGPVPLFAIPNSTNGFIETINLLKE-GIEVKILGNGTNVL----PKDEPMD-FVVVSTERLDD 87 (297)
T ss_pred cccCEeeeCcEEEEEEecCCHHHHHHHHHHHhc-CCCEEEEcCCeeEE----EecCCcc-EEEEEeCCcCc
Confidence 466888877 8999999999999999999999 99999999999996 4566664 99999866754
No 16
>PRK13903 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.09 E-value=3.2e-10 Score=84.73 Aligned_cols=60 Identities=17% Similarity=0.282 Sum_probs=52.5
Q ss_pred ccceeeecC--ccEEEEcCCHHHHHHHHHHHHhCCCcEEEEcCCCCCCCCcccCCCCccceEEEEcC
Q psy4717 21 VNHQAIFIG--TRYWCITESTEDVEKVVQVAHDHNLVIIPFGGGTNVTGAVACPENELRTIISLDTS 85 (90)
Q Consensus 21 ~~~~~~~~~--p~~vv~P~s~~~v~~vv~~a~~~~i~v~~~G~G~n~~~~~~~~~~~~~~gvvIdl~ 85 (90)
..+++|+++ |++++.|+|++|+++++++|+++++|++++|+|||+. +.|++++ |+||+++
T Consensus 22 ~~~tt~~iGg~A~~~~~p~s~edl~~~l~~a~~~~~p~~vlGgGSNlL----v~D~g~~-GvVI~l~ 83 (363)
T PRK13903 22 APLTTLRVGGPARRLVTCTSTEELVAAVRELDAAGEPLLVLGGGSNLV----IADDGFD-GTVVRVA 83 (363)
T ss_pred ccccEeecCccceEEEEeCCHHHHHHHHHHHHHCCCCEEEEeCCeeEe----ECCCCcc-EEEEEeC
Confidence 356778876 8999999999999999999999999999999999996 4666664 8999986
No 17
>KOG1231|consensus
Probab=99.04 E-value=4.9e-10 Score=85.46 Aligned_cols=68 Identities=19% Similarity=0.251 Sum_probs=55.3
Q ss_pred HHHHHhccCccccceeeecCccEEEEcCCHHHHHHHHHHHHhC--CCcEEEEcCCCCCCCCcccCCCCccceEEEEcCC
Q psy4717 10 VVQVAHDHNLVVNHQAIFIGTRYWCITESTEDVEKVVQVAHDH--NLVIIPFGGGTNVTGAVACPENELRTIISLDTSQ 86 (90)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~p~~vv~P~s~~~v~~vv~~a~~~--~i~v~~~G~G~n~~~~~~~~~~~~~~gvvIdl~~ 86 (90)
++..+++.+- .+...|.+|.+|+|++||+++++.|+.. .+|++|+|+||++.|++++.. +|++|.|+.
T Consensus 49 ~a~~s~dFg~-----~~~~~P~aVL~P~S~edVs~ilk~~~~~~s~~pVaarG~GhSl~Gqa~a~~----~GvvV~m~~ 118 (505)
T KOG1231|consen 49 VAHASTDFGN-----RTQLPPLAVLFPSSVEDVSKILKHCNDYGSNFPVAARGGGHSLEGQALATR----GGVVVCMDS 118 (505)
T ss_pred hhhhhhhccc-----cCCCCCeeEEcCCCHHHHHHHHHHHhccCCcceeeccCCcccccCccccCC----CCeEEEEeh
Confidence 4444455542 3667799999999999999999999999 899999999999999997545 487777753
No 18
>TIGR01678 FAD_lactone_ox sugar 1,4-lactone oxidases. This model represents a family of at least two different sugar 1,4 lactone oxidases, both involved in synthesizing ascorbic acid or a derivative. These include L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae. Members are proposed to have the cofactor FAD covalently bound at a site specified by Prosite motif PS00862; OX2_COVAL_FAD; 1.
Probab=99.04 E-value=7.7e-10 Score=84.23 Aligned_cols=58 Identities=16% Similarity=0.256 Sum_probs=51.0
Q ss_pred eecCccEEEEcCCHHHHHHHHHHHHhCCCcEEEEcCCCCCCCCcccCCCCccceEEEEcCCCCC
Q psy4717 26 IFIGTRYWCITESTEDVEKVVQVAHDHNLVIIPFGGGTNVTGAVACPENELRTIISLDTSQMQS 89 (90)
Q Consensus 26 ~~~~p~~vv~P~s~~~v~~vv~~a~~~~i~v~~~G~G~n~~~~~~~~~~~~~~gvvIdl~~m~~ 89 (90)
+...|.+|+.|+|++||+++|++|+++++++.++|+||++.+... . +|++|||++||+
T Consensus 11 ~~~~p~~v~~P~s~eev~~iv~~A~~~~~~v~v~G~GhS~s~~~~-~-----~gvvIdl~~l~~ 68 (438)
T TIGR01678 11 YSASPEVYYQPTSVEEVREVLALAREQKKKVKVVGGGHSPSDIAC-T-----DGFLIHLDKMNK 68 (438)
T ss_pred ccCCCCEEEecCCHHHHHHHHHHHHHCCCeEEEECCCCCCCCCcc-C-----CeEEEEhhhcCC
Confidence 556699999999999999999999999999999999999875442 2 489999999975
No 19
>PRK14648 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.00 E-value=9.9e-10 Score=81.87 Aligned_cols=63 Identities=17% Similarity=0.401 Sum_probs=54.6
Q ss_pred ccceeeecC--ccEEEEcCCHHHHHHHHHHHHhCCCcEEEEcCCCCCCCCcccCCCCccceEEEEcCCCC
Q psy4717 21 VNHQAIFIG--TRYWCITESTEDVEKVVQVAHDHNLVIIPFGGGTNVTGAVACPENELRTIISLDTSQMQ 88 (90)
Q Consensus 21 ~~~~~~~~~--p~~vv~P~s~~~v~~vv~~a~~~~i~v~~~G~G~n~~~~~~~~~~~~~~gvvIdl~~m~ 88 (90)
.++++|+++ +++++.|+|.+|+++++++|+++++|++++|+|||+. +.|++++ |+||.+.+|+
T Consensus 19 a~~tT~rIGG~A~~~~~p~s~~el~~~l~~~~~~~~p~~iLG~GSNlL----~~D~g~~-G~VI~l~~~~ 83 (354)
T PRK14648 19 AERCSFRIGGAAQFWAEPRSCTQLRALIEEAQRARIPLSLIGGGSNVL----IADEGVP-GLMLSLRRFR 83 (354)
T ss_pred cccceeeeCcEEEEEEeeCCHHHHHHHHHHHHHcCCCEEEEeceeEEE----EeCCCcc-EEEEEeCCcC
Confidence 356788877 8999999999999999999999999999999999996 4666675 9999885554
No 20
>PRK14650 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=98.94 E-value=2.4e-09 Score=78.36 Aligned_cols=63 Identities=21% Similarity=0.425 Sum_probs=53.8
Q ss_pred ccceeeecC--ccEEEEcCCHHHHHHHHHHHHhCCCcEEEEcCCCCCCCCcccCCCC-ccceEEEEcCCCC
Q psy4717 21 VNHQAIFIG--TRYWCITESTEDVEKVVQVAHDHNLVIIPFGGGTNVTGAVACPENE-LRTIISLDTSQMQ 88 (90)
Q Consensus 21 ~~~~~~~~~--p~~vv~P~s~~~v~~vv~~a~~~~i~v~~~G~G~n~~~~~~~~~~~-~~~gvvIdl~~m~ 88 (90)
.++++++++ +++++.|+|.+|+++++++|.++++|++++|+|||+. +.|++ ++ |++|.+.+|+
T Consensus 22 ~~~tt~~iGG~A~~~~~p~~~~eL~~~l~~~~~~~~p~~vlG~GSNlL----v~D~g~~~-g~vi~~~~~~ 87 (302)
T PRK14650 22 ANYTTYKIGGISKLFLTPKTIKDAEHIFKAAIEEKIKIFILGGGSNIL----INDEEEID-FPIIYTGHLN 87 (302)
T ss_pred cccceeeeCcEEEEEEecCCHHHHHHHHHHHHHcCCCEEEEeceeEEE----EECCCccc-eEEEEECCcC
Confidence 356778877 8999999999999999999999999999999999996 46666 54 8888875554
No 21
>TIGR01677 pln_FAD_oxido plant-specific FAD-dependent oxidoreductase. This model represents an uncharacterized plant-specific family of FAD-dependent oxidoreductases. At least seven distinct members are found in Arabidopsis thaliana. The family shows considerable sequence similarity to three different enzymes of ascorbic acid biosynthesis: L-galactono-1,4-lactone dehydrogenase (EC 1.3.2.3) from higher plants, D-arabinono-1,4-lactone oxidase (EC 1.1.3.37 from Saccharomyces cerevisiae, and L-gulonolactone oxidase (EC 1.1.3.8) from mouse, as well as to a bacterial sorbitol oxidase. The class of compound acted on by members of this family is unknown.
Probab=98.93 E-value=4.4e-09 Score=82.30 Aligned_cols=62 Identities=8% Similarity=0.067 Sum_probs=50.3
Q ss_pred eecCccEEEEcCCHHHHHHHHHHHHhCCCcEEEEc-CCCCCCCCcccCCCCccceEEEEcCCCCC
Q psy4717 26 IFIGTRYWCITESTEDVEKVVQVAHDHNLVIIPFG-GGTNVTGAVACPENELRTIISLDTSQMQS 89 (90)
Q Consensus 26 ~~~~p~~vv~P~s~~~v~~vv~~a~~~~i~v~~~G-~G~n~~~~~~~~~~~~~~gvvIdl~~m~~ 89 (90)
+...|.+|++|+|++||+++|++|+++++++.++| +||++.+... ++ +.++|++|||++||+
T Consensus 28 ~~~~p~~vv~P~s~eeV~~iV~~A~~~g~~v~v~GG~gHs~~~~a~-t~-~~~ggvvIdL~~Ln~ 90 (557)
T TIGR01677 28 STCRAANVAYPKTEAELVSVVAAATAAGRKMKVVTRYSHSIPKLAC-PD-GSDGALLISTKRLNH 90 (557)
T ss_pred ccCCCCEEEecCCHHHHHHHHHHHHHCCCeEEEEeCCCCCcCcccc-cC-CCCCEEEEEcccCCC
Confidence 45569999999999999999999999999999996 5888765442 32 122379999999986
No 22
>TIGR01676 GLDHase galactonolactone dehydrogenase. This model represents L-Galactono-gamma-lactone dehydrogenase (EC 1.3.2.3). This enzyme catalyzes the final step in ascorbic acid biosynthesis in higher plants. This protein is homologous to ascorbic acid biosynthesis enzymes of other species: L-gulono-gamma-lactone oxidase in rat and L-galactono-gamma-lactone oxidase in yeast. All three covalently bind the cofactor FAD.
Probab=98.92 E-value=2.9e-09 Score=83.04 Aligned_cols=58 Identities=22% Similarity=0.279 Sum_probs=50.7
Q ss_pred eecCccEEEEcCCHHHHHHHHHHHHhCCCcEEEEcCCCCCCCCcccCCCCccceEEEEcCCCCC
Q psy4717 26 IFIGTRYWCITESTEDVEKVVQVAHDHNLVIIPFGGGTNVTGAVACPENELRTIISLDTSQMQS 89 (90)
Q Consensus 26 ~~~~p~~vv~P~s~~~v~~vv~~a~~~~i~v~~~G~G~n~~~~~~~~~~~~~~gvvIdl~~m~~ 89 (90)
+...|..+++|+|++||+++|+.|++++.++.|+|+||++.+... ++ +.+|||++||+
T Consensus 58 ~~~~p~~~~~P~s~eEV~~iV~~A~~~g~~Vr~~GsGhS~sg~a~-t~-----g~lldL~~ln~ 115 (541)
T TIGR01676 58 HEVLTRTFHQPEAIEELEGIVKQANEKKARIRPVGSGLSPNGIGL-SR-----AGMVNLALMDK 115 (541)
T ss_pred cccCcceEECCCCHHHHHHHHHHHHHcCCcEEEECCCcCCCCccc-CC-----CeEEEhhhCCC
Confidence 445599999999999999999999999999999999999987664 43 45799999985
No 23
>PRK00046 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=98.92 E-value=3.2e-09 Score=78.66 Aligned_cols=61 Identities=23% Similarity=0.272 Sum_probs=52.1
Q ss_pred ccceeeecC--ccEEEEcCCHHHHHHHHHHHHhCCCcEEEEcCCCCCCCCcccCCCCccceEEEEcCCCC
Q psy4717 21 VNHQAIFIG--TRYWCITESTEDVEKVVQVAHDHNLVIIPFGGGTNVTGAVACPENELRTIISLDTSQMQ 88 (90)
Q Consensus 21 ~~~~~~~~~--p~~vv~P~s~~~v~~vv~~a~~~~i~v~~~G~G~n~~~~~~~~~~~~~~gvvIdl~~m~ 88 (90)
.++++|+++ +++++.|+|++|+++++++|+++++|++++|+|||+. +.| +++ |++|.+. |+
T Consensus 10 ~~~tt~riGG~A~~~~~p~~~~el~~~~~~~~~~~~p~~vlG~GSNlL----v~D-~~~-g~vI~~~-~~ 72 (334)
T PRK00046 10 KPLNTFGIDARARHLVEAESEEQLLEALADARAAGLPVLVLGGGSNVL----FTE-DFD-GTVLLNR-IK 72 (334)
T ss_pred cccceeccCcEEeEEEeeCCHHHHHHHHHHHHHcCCCEEEEeceEEEE----ECC-CCC-EEEEEec-CC
Confidence 356788887 8999999999999999999999999999999999996 455 554 8988873 54
No 24
>COG0812 MurB UDP-N-acetylmuramate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=98.77 E-value=2.5e-08 Score=72.77 Aligned_cols=62 Identities=15% Similarity=0.333 Sum_probs=53.2
Q ss_pred cceeeecC--ccEEEEcCCHHHHHHHHHHHHhCCCcEEEEcCCCCCCCCcccCCCCccceEEEEcCCCC
Q psy4717 22 NHQAIFIG--TRYWCITESTEDVEKVVQVAHDHNLVIIPFGGGTNVTGAVACPENELRTIISLDTSQMQ 88 (90)
Q Consensus 22 ~~~~~~~~--p~~vv~P~s~~~v~~vv~~a~~~~i~v~~~G~G~n~~~~~~~~~~~~~~gvvIdl~~m~ 88 (90)
.+++|+++ ++.++.|++++|+.+++++|.+.++|+.++|+|||+. +.|++. ++++|.+.+++
T Consensus 11 ~~ttfriGg~A~~~~~~~~~e~l~~~~~~~~~~~~p~~ilG~GSNlL----v~d~g~-~gvvi~~~~~~ 74 (291)
T COG0812 11 RYTTFRIGGPAEVLVEPRDIEELKAALKYAKAEDLPVLILGGGSNLL----VRDGGI-GGVVIKLGKLN 74 (291)
T ss_pred cceeEecCcceeEEEecCCHHHHHHHHHhhhhcCCCEEEEecCceEE----EecCCC-ceEEEEccccc
Confidence 45778876 8999999999999999999999999999999999985 355554 59999887654
No 25
>PLN02465 L-galactono-1,4-lactone dehydrogenase
Probab=98.75 E-value=3.1e-08 Score=77.80 Aligned_cols=58 Identities=26% Similarity=0.330 Sum_probs=49.1
Q ss_pred eecCccEEEEcCCHHHHHHHHHHHHhCCCcEEEEcCCCCCCCCcccCCCCccceEEEEcCCCCC
Q psy4717 26 IFIGTRYWCITESTEDVEKVVQVAHDHNLVIIPFGGGTNVTGAVACPENELRTIISLDTSQMQS 89 (90)
Q Consensus 26 ~~~~p~~vv~P~s~~~v~~vv~~a~~~~i~v~~~G~G~n~~~~~~~~~~~~~~gvvIdl~~m~~ 89 (90)
....|.+++.|+|++||+++|++|+++++++.++|+||+..+... .+ +.+|||++|++
T Consensus 93 ~~~~p~~vv~P~S~eEV~~iV~~A~~~g~~VrvvGsGhS~~~l~~-td-----~glIdL~~l~~ 150 (573)
T PLN02465 93 HEVQTRRYHQPESLEELEDIVKEAHEKGRRIRPVGSGLSPNGLAF-SR-----EGMVNLALMDK 150 (573)
T ss_pred cCCCCCEEEEeCCHHHHHHHHHHHHHcCCcEEEEcCCcCCCCeee-CC-----CEEEECcCCCC
Confidence 345599999999999999999999999999999999998865553 43 45689998875
No 26
>KOG1232|consensus
Probab=98.70 E-value=6.3e-09 Score=78.50 Aligned_cols=60 Identities=23% Similarity=0.310 Sum_probs=54.4
Q ss_pred eecCccEEEEcCCHHHHHHHHHHHHhCCCcEEEEcCCCCCCCCcccCCCCccceEEEEcCCCCC
Q psy4717 26 IFIGTRYWCITESTEDVEKVVQVAHDHNLVIIPFGGGTNVTGAVACPENELRTIISLDTSQMQS 89 (90)
Q Consensus 26 ~~~~p~~vv~P~s~~~v~~vv~~a~~~~i~v~~~G~G~n~~~~~~~~~~~~~~gvvIdl~~m~~ 89 (90)
|+.....+..|+|+++|++++++|++.++.++|+||-|++.||+.|.- +-|||+|.+||+
T Consensus 86 yrG~sklvL~Pkst~eVS~ILkYCn~~kLAVVPQGGNTgLVGgSVPvf----DEiVlsl~~mNK 145 (511)
T KOG1232|consen 86 YRGQSKLVLKPKSTEEVSAILKYCNDRKLAVVPQGGNTGLVGGSVPVF----DEIVLSLGLMNK 145 (511)
T ss_pred ccCCceEEecCCCHHHHHHHHHhhccccEEEecCCCCcccccCcccch----HHHhhhhhhhcc
Confidence 566689999999999999999999999999999999999999997655 479999999985
No 27
>TIGR01679 bact_FAD_ox FAD-linked oxidoreductase. This model represents a family of bacterial oxidoreductases with covalently linked FAD, closely related to two different eukaryotic oxidases, L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae.
Probab=98.66 E-value=4.1e-08 Score=74.28 Aligned_cols=55 Identities=11% Similarity=0.103 Sum_probs=46.4
Q ss_pred eecCccEEEEcCCHHHHHHHHHHHHhCCCcEEEEcCCCCCCCCcccCCCCccceEEEEcCCCCC
Q psy4717 26 IFIGTRYWCITESTEDVEKVVQVAHDHNLVIIPFGGGTNVTGAVACPENELRTIISLDTSQMQS 89 (90)
Q Consensus 26 ~~~~p~~vv~P~s~~~v~~vv~~a~~~~i~v~~~G~G~n~~~~~~~~~~~~~~gvvIdl~~m~~ 89 (90)
+...|.+++.|+|++||+++|+.|++ ++.++|+||++.+.. .. +|++|||++||+
T Consensus 8 ~~~~p~~v~~P~s~~ev~~~v~~a~~---~v~~~G~Ghs~~~~~--~~----~g~~idl~~l~~ 62 (419)
T TIGR01679 8 QVAAPSAIVRPTDEGELADVIAQAAK---PVRAVGSGHSFTDLA--CT----DGTMISLTGLQG 62 (419)
T ss_pred ccCCCCeEECCCCHHHHHHHHHHhCC---CEEEEeCCCCCCCcc--cC----CCEEEEhhHcCC
Confidence 45569999999999999999999974 799999999987543 22 479999999975
No 28
>PRK14651 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=98.35 E-value=9.3e-07 Score=64.07 Aligned_cols=53 Identities=15% Similarity=0.323 Sum_probs=44.1
Q ss_pred cceeeecC--ccEEEEcCCHHHHHHHHHHHHhCCCcEEEEcCCCCCCCCcccCCCCccceEEEEcCC
Q psy4717 22 NHQAIFIG--TRYWCITESTEDVEKVVQVAHDHNLVIIPFGGGTNVTGAVACPENELRTIISLDTSQ 86 (90)
Q Consensus 22 ~~~~~~~~--p~~vv~P~s~~~v~~vv~~a~~~~i~v~~~G~G~n~~~~~~~~~~~~~~gvvIdl~~ 86 (90)
+|++|+++ +++++ |++++|+.+++ ++|++++|+|||+. +.|++++ |++|.+.+
T Consensus 11 ~~tt~riGG~A~~~~-p~~~~~l~~~~------~~p~~vlG~GSNlL----~~D~g~~-g~vI~l~~ 65 (273)
T PRK14651 11 RYTTLGVGGPAELWT-VETHEQLAEAT------EAPYRVLGGGSNLL----VSDAGVP-ERVIRLGG 65 (273)
T ss_pred cccEeecCceEEEEe-cCCHHHHHHHH------CCCeEEEeceeEEE----EcCCCcc-eEEEEECC
Confidence 56788876 67777 99999999988 59999999999996 5677775 89998854
No 29
>PRK11282 glcE glycolate oxidase FAD binding subunit; Provisional
Probab=98.24 E-value=2.8e-06 Score=63.43 Aligned_cols=46 Identities=17% Similarity=0.061 Sum_probs=38.5
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEcCCCCCCCCcccCCCCccceEEEEcCCCCC
Q psy4717 38 STEDVEKVVQVAHDHNLVIIPFGGGTNVTGAVACPENELRTIISLDTSQMQS 89 (90)
Q Consensus 38 s~~~v~~vv~~a~~~~i~v~~~G~G~n~~~~~~~~~~~~~~gvvIdl~~m~~ 89 (90)
.++||+++|++|+++++|+.|+|+||+..++. +. .+++|||++||+
T Consensus 3 ~~~ev~~~v~~A~~~~~~v~~~GgGt~~~~g~-~~-----~~~vldl~~ln~ 48 (352)
T PRK11282 3 ISAALLERVRQAAADGTPLRIRGGGSKDFYGR-AL-----AGEVLDTRAHRG 48 (352)
T ss_pred hHHHHHHHHHHHHHCCCeEEEECCCCCCCCCC-CC-----CCeEEEcccCCC
Confidence 47999999999999999999999998655444 23 267999999986
No 30
>KOG4730|consensus
Probab=97.68 E-value=5.6e-05 Score=58.33 Aligned_cols=54 Identities=11% Similarity=0.173 Sum_probs=47.7
Q ss_pred ccEEEEcCCHHHHHHHHHHHHhCCCcEEEEcCCCCCCCCcccCCCCccceEEEEcCCCCC
Q psy4717 30 TRYWCITESTEDVEKVVQVAHDHNLVIIPFGGGTNVTGAVACPENELRTIISLDTSQMQS 89 (90)
Q Consensus 30 p~~vv~P~s~~~v~~vv~~a~~~~i~v~~~G~G~n~~~~~~~~~~~~~~gvvIdl~~m~~ 89 (90)
++-|-+|++++|+.++|+.|++++..+.+.|.||+...-.+ .+ |.+|+|..||+
T Consensus 50 aanv~yP~teaeL~~lVa~A~~a~~kirvVg~gHSp~~l~c-td-----g~lisl~~lnk 103 (518)
T KOG4730|consen 50 AANVNYPKTEAELVELVAAATEAGKKIRVVGSGHSPSKLVC-TD-----GLLISLDKLNK 103 (518)
T ss_pred hcccCCCCCHHHHHHHHHHHHHcCceEEEecccCCCCccee-cc-----ccEEEhhhhcc
Confidence 66677899999999999999999999999999999986663 54 79999999985
No 31
>PRK13904 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=97.07 E-value=0.00073 Score=48.72 Aligned_cols=44 Identities=16% Similarity=0.172 Sum_probs=34.4
Q ss_pred cceeeecC--ccEEEEcCCHHHHHHHHHHHHhCCCcEEEEcCCCCCCCCcccCCCCccceEE
Q psy4717 22 NHQAIFIG--TRYWCITESTEDVEKVVQVAHDHNLVIIPFGGGTNVTGAVACPENELRTIIS 81 (90)
Q Consensus 22 ~~~~~~~~--p~~vv~P~s~~~v~~vv~~a~~~~i~v~~~G~G~n~~~~~~~~~~~~~~gvv 81 (90)
+|++|+++ +++++.|++.+ + ++|++++|+|||+. +.|++. ++++
T Consensus 9 ~~tt~~iGG~A~~~~~~~~~~-l----------~~p~~vlG~GSNlL----v~D~g~-~~vv 54 (257)
T PRK13904 9 KYSSVKIGPPLEVLVLEEIDD-F----------SQDGQIIGGANNLL----ISPNPK-NLAI 54 (257)
T ss_pred hcCceeECceEEEEEEechhh-h----------CCCeEEEeceeEEE----EecCCc-cEEE
Confidence 46778887 78899998887 5 89999999999996 466653 3555
No 32
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=88.01 E-value=0.68 Score=32.53 Aligned_cols=24 Identities=17% Similarity=0.380 Sum_probs=21.4
Q ss_pred HHHHHHHHHhCCCcEEEEcCCCCC
Q psy4717 42 VEKVVQVAHDHNLVIIPFGGGTNV 65 (90)
Q Consensus 42 v~~vv~~a~~~~i~v~~~G~G~n~ 65 (90)
+.+.++||+++++|+++.++|.+.
T Consensus 78 fKef~e~ike~di~fiVvSsGm~~ 101 (220)
T COG4359 78 FKEFVEWIKEHDIPFIVVSSGMDP 101 (220)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCch
Confidence 456789999999999999999986
No 33
>PF00941 FAD_binding_5: FAD binding domain in molybdopterin dehydrogenase; InterPro: IPR002346 Oxidoreductases, that also bind molybdopterin, have essentially no similarity outside this common domain. They include aldehyde oxidase (1.2.3.1 from EC), that converts an aldehyde and water to an acid and hydrogen peroxide, and xanthine dehydrogenase (1.1.1.204 from EC), that converts xanthine to urate. These enzymes require molybdopterin and FAD as cofactors and have and two 2FE-2S clusters. Another enzyme that contains this domain is the Pseudomonas thermocarboxydovorans carbon monoxide oxygenase.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2E1Q_C 2CKJ_A 3EUB_K 3NS1_K 3NVV_B 1FO4_B 3AM9_A 3AX7_B 3BDJ_A 3ETR_B ....
Probab=87.58 E-value=0.51 Score=31.64 Aligned_cols=50 Identities=18% Similarity=0.201 Sum_probs=31.9
Q ss_pred EEEEcCCHHHHHHHHHHHHhCCCcEEEEcCCCCCCCCcccCCCCccceEEEEcCCC
Q psy4717 32 YWCITESTEDVEKVVQVAHDHNLVIIPFGGGTNVTGAVACPENELRTIISLDTSQM 87 (90)
Q Consensus 32 ~vv~P~s~~~v~~vv~~a~~~~i~v~~~G~G~n~~~~~~~~~~~~~~gvvIdl~~m 87 (90)
-++.|+|.+|+.++++ . +-...+.+|||.+.... ..+......+||++++
T Consensus 4 ~~~~P~sl~ea~~ll~--~--~~~a~~vaGgT~l~~~~--~~~~~~~~~lIdl~~i 53 (171)
T PF00941_consen 4 EYFRPKSLEEALELLA--K--GPDARIVAGGTDLGVQM--REGILSPDVLIDLSRI 53 (171)
T ss_dssp EEEE-SSHHHHHHHHH--H--GTTEEEESS-TTHHHHH--HTTS---SEEEEGTTS
T ss_pred EEEccCCHHHHHHHHh--c--CCCCEEEeCCCccchhc--ccCccccceEEEeEEe
Confidence 4789999999999998 2 23578899999874222 1111113589999876
No 34
>PRK09799 putative oxidoreductase; Provisional
Probab=85.62 E-value=2.1 Score=30.67 Aligned_cols=49 Identities=12% Similarity=0.211 Sum_probs=33.4
Q ss_pred EEEEcCCHHHHHHHHHHHHhCCCcEEEEcCCCCCCCCcccCCCCccceEEEEcCCC
Q psy4717 32 YWCITESTEDVEKVVQVAHDHNLVIIPFGGGTNVTGAVACPENELRTIISLDTSQM 87 (90)
Q Consensus 32 ~vv~P~s~~~v~~vv~~a~~~~i~v~~~G~G~n~~~~~~~~~~~~~~gvvIdl~~m 87 (90)
-+..|+|.+|+.++++ +++-...+++|||.+.... +.....++||+.++
T Consensus 4 ~y~~P~sl~Ea~~ll~---~~~~~a~ilAGGT~L~~~~----~~~~~~~lIdi~~i 52 (258)
T PRK09799 4 QFFRPDSVEQALELKR---RYQDEAVWFAGGSKLNATP----TRTDKKIAISLQDL 52 (258)
T ss_pred cEeCCCCHHHHHHHHH---hCCCCCEEEecCCChHhhh----CCCCCCEEEEcCCC
Confidence 4789999999998876 3432356799999984221 11123688998865
No 35
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=84.99 E-value=1.1 Score=32.52 Aligned_cols=22 Identities=14% Similarity=0.377 Sum_probs=20.2
Q ss_pred CHHHHHHHHHHHHhCCCcEEEE
Q psy4717 38 STEDVEKVVQVAHDHNLVIIPF 59 (90)
Q Consensus 38 s~~~v~~vv~~a~~~~i~v~~~ 59 (90)
|.+|+++++++|++.||.++|-
T Consensus 70 T~~di~elv~yA~~rgI~viPE 91 (303)
T cd02742 70 TYAQLKDIIEYAAARGIEVIPE 91 (303)
T ss_pred CHHHHHHHHHHHHHcCCEEEEe
Confidence 5699999999999999999984
No 36
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=84.93 E-value=1.1 Score=33.11 Aligned_cols=22 Identities=23% Similarity=0.522 Sum_probs=20.6
Q ss_pred CHHHHHHHHHHHHhCCCcEEEE
Q psy4717 38 STEDVEKVVQVAHDHNLVIIPF 59 (90)
Q Consensus 38 s~~~v~~vv~~a~~~~i~v~~~ 59 (90)
|.+|+++++++|++.||.|+|-
T Consensus 73 T~~di~elv~yA~~rgI~vIPE 94 (329)
T cd06568 73 TQEDYKDIVAYAAERHITVVPE 94 (329)
T ss_pred CHHHHHHHHHHHHHcCCEEEEe
Confidence 7899999999999999999984
No 37
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=84.35 E-value=1.3 Score=32.39 Aligned_cols=24 Identities=17% Similarity=0.430 Sum_probs=21.7
Q ss_pred cCCHHHHHHHHHHHHhCCCcEEEE
Q psy4717 36 TESTEDVEKVVQVAHDHNLVIIPF 59 (90)
Q Consensus 36 P~s~~~v~~vv~~a~~~~i~v~~~ 59 (90)
+=|.+|+++++++|+++||.++|-
T Consensus 56 ~yT~~ei~ei~~yA~~~gI~vIPe 79 (301)
T cd06565 56 AYTKEEIREIDDYAAELGIEVIPL 79 (301)
T ss_pred CcCHHHHHHHHHHHHHcCCEEEec
Confidence 347899999999999999999984
No 38
>PF00728 Glyco_hydro_20: Glycosyl hydrolase family 20, catalytic domain; InterPro: IPR015883 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3RPM_A 1C7T_A 1QBA_A 1QBB_A 1C7S_A 3RCN_A 2YL8_A 2YL6_A 2YLL_A 2YL5_C ....
Probab=83.89 E-value=1.1 Score=32.59 Aligned_cols=22 Identities=27% Similarity=0.560 Sum_probs=19.2
Q ss_pred CHHHHHHHHHHHHhCCCcEEEE
Q psy4717 38 STEDVEKVVQVAHDHNLVIIPF 59 (90)
Q Consensus 38 s~~~v~~vv~~a~~~~i~v~~~ 59 (90)
|.+|+++++++|+++||.|+|-
T Consensus 71 T~~di~~lv~yA~~~gI~VIPe 92 (351)
T PF00728_consen 71 TKEDIRELVAYAKERGIEVIPE 92 (351)
T ss_dssp EHHHHHHHHHHHHHTT-EEEEE
T ss_pred CHHHHHHHHHHHHHcCCceeee
Confidence 5699999999999999999984
No 39
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=83.12 E-value=1.5 Score=32.27 Aligned_cols=23 Identities=26% Similarity=0.478 Sum_probs=20.9
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEE
Q psy4717 37 ESTEDVEKVVQVAHDHNLVIIPF 59 (90)
Q Consensus 37 ~s~~~v~~vv~~a~~~~i~v~~~ 59 (90)
=|.+|+++++++|++.||.++|-
T Consensus 65 yT~~di~elv~yA~~rgI~vIPE 87 (311)
T cd06570 65 YTQEQIREVVAYARDRGIRVVPE 87 (311)
T ss_pred cCHHHHHHHHHHHHHcCCEEEEe
Confidence 37799999999999999999984
No 40
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=82.84 E-value=1.6 Score=32.59 Aligned_cols=22 Identities=23% Similarity=0.555 Sum_probs=20.4
Q ss_pred CHHHHHHHHHHHHhCCCcEEEE
Q psy4717 38 STEDVEKVVQVAHDHNLVIIPF 59 (90)
Q Consensus 38 s~~~v~~vv~~a~~~~i~v~~~ 59 (90)
|.+|+++++++|+++||.|+|-
T Consensus 84 T~~di~eiv~yA~~rgI~VIPE 105 (357)
T cd06563 84 TQEEIREIVAYAAERGITVIPE 105 (357)
T ss_pred CHHHHHHHHHHHHHcCCEEEEe
Confidence 6899999999999999999984
No 41
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=82.30 E-value=1.4 Score=32.30 Aligned_cols=22 Identities=27% Similarity=0.516 Sum_probs=20.5
Q ss_pred CHHHHHHHHHHHHhCCCcEEEE
Q psy4717 38 STEDVEKVVQVAHDHNLVIIPF 59 (90)
Q Consensus 38 s~~~v~~vv~~a~~~~i~v~~~ 59 (90)
|.+|+++++++|+++||.++|-
T Consensus 80 T~~di~eiv~yA~~rgI~vIPE 101 (326)
T cd06564 80 TKEEFKELIAYAKDRGVNIIPE 101 (326)
T ss_pred cHHHHHHHHHHHHHcCCeEecc
Confidence 7799999999999999999984
No 42
>TIGR03312 Se_sel_red_FAD probable selenate reductase, FAD-binding subunit. This protein is suggested by Bebien, et al., to be the FAD-binding subunit of a molydbopterin-containing selenate reductase. Our comparative genomics suggests it to be a subunit of a selenium-dependent molybdenum hydroxylase for an unknown substrate.
Probab=81.50 E-value=4.1 Score=29.16 Aligned_cols=48 Identities=17% Similarity=0.310 Sum_probs=31.9
Q ss_pred EEEcCCHHHHHHHHHHHHhCCCcEEEEcCCCCCCCCcccCCCCccceEEEEcCCC
Q psy4717 33 WCITESTEDVEKVVQVAHDHNLVIIPFGGGTNVTGAVACPENELRTIISLDTSQM 87 (90)
Q Consensus 33 vv~P~s~~~v~~vv~~a~~~~i~v~~~G~G~n~~~~~~~~~~~~~~gvvIdl~~m 87 (90)
++.|+|.+|+.++++ +++-.-.+++|||.+.-... .. ...++||+.++
T Consensus 4 y~~P~sl~Ea~~ll~---~~~~~a~~lAGGTdL~~~~~--~~--~~~~lIdl~~i 51 (257)
T TIGR03312 4 FFRPESTIQALELKK---RHTGVAVWFAGGSKLNATPT--RT--DKKVAISLDKL 51 (257)
T ss_pred eECCCCHHHHHHHHH---hCCCCCEEEecCcchhhhhc--cc--CCCEEEEcCCC
Confidence 689999999998876 34323467899999853221 11 12578988764
No 43
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=81.45 E-value=1.9 Score=32.09 Aligned_cols=22 Identities=32% Similarity=0.522 Sum_probs=20.7
Q ss_pred CHHHHHHHHHHHHhCCCcEEEE
Q psy4717 38 STEDVEKVVQVAHDHNLVIIPF 59 (90)
Q Consensus 38 s~~~v~~vv~~a~~~~i~v~~~ 59 (90)
|.+|+++++++|++.||.|+|=
T Consensus 68 T~~di~eiv~yA~~rgI~vIPE 89 (348)
T cd06562 68 TPEDVKEIVEYARLRGIRVIPE 89 (348)
T ss_pred CHHHHHHHHHHHHHcCCEEEEe
Confidence 8899999999999999999984
No 44
>KOG4498|consensus
Probab=81.03 E-value=6.6 Score=27.48 Aligned_cols=60 Identities=15% Similarity=0.171 Sum_probs=45.3
Q ss_pred eecCccEEEEcCCHHHHHHHHHHHHhCCCcEEEEcCCCCCCCCcccCCCCccceEEEEcC
Q psy4717 26 IFIGTRYWCITESTEDVEKVVQVAHDHNLVIIPFGGGTNVTGAVACPENELRTIISLDTS 85 (90)
Q Consensus 26 ~~~~p~~vv~P~s~~~v~~vv~~a~~~~i~v~~~G~G~n~~~~~~~~~~~~~~gvvIdl~ 85 (90)
+-.+|.||+.=+-++|++.+-.+..++|++++..|.|+-...........+.+-|.+|..
T Consensus 57 ~vRrpgCvlCR~~aadLa~l~~~ld~~Gv~Li~vg~g~~~~~~~f~~q~~f~gevylD~~ 116 (197)
T KOG4498|consen 57 FVRRPGCVLCREEAADLASLKDLLDELGVVLIAVGPGSHVQFEDFWDQTYFSGEVYLDPH 116 (197)
T ss_pred EeccCcEEEeHHHHHHHHHHHHHHHHhCCEEEEEeccceeecchhhcccCcceeEEEcCc
Confidence 345699999999999999999999999999999998876544443233334445777664
No 45
>PF15608 PELOTA_1: PELOTA RNA binding domain
Probab=79.38 E-value=6.3 Score=24.73 Aligned_cols=33 Identities=6% Similarity=0.100 Sum_probs=28.5
Q ss_pred ccEEEEcCCHHHHHHHHHHHHhCCCcEEEEcCC
Q psy4717 30 TRYWCITESTEDVEKVVQVAHDHNLVIIPFGGG 62 (90)
Q Consensus 30 p~~vv~P~s~~~v~~vv~~a~~~~i~v~~~G~G 62 (90)
-..++.+.+-.+++.++.+|.+.|+|+-..+.-
T Consensus 57 ~~vLVr~~~~pd~~Hl~~LA~ekgVpVe~~~d~ 89 (100)
T PF15608_consen 57 WKVLVRDPDDPDLAHLLLLAEEKGVPVEVYPDL 89 (100)
T ss_pred CEEEECCCCCccHHHHHHHHHHcCCcEEEeCCC
Confidence 366788888899999999999999999998644
No 46
>cd06569 GH20_Sm-chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=79.02 E-value=2.5 Score=32.73 Aligned_cols=22 Identities=23% Similarity=0.389 Sum_probs=20.6
Q ss_pred CHHHHHHHHHHHHhCCCcEEEE
Q psy4717 38 STEDVEKVVQVAHDHNLVIIPF 59 (90)
Q Consensus 38 s~~~v~~vv~~a~~~~i~v~~~ 59 (90)
|.+|+++|+++|++.+|.|+|=
T Consensus 95 T~~di~eiv~yA~~rgI~VIPE 116 (445)
T cd06569 95 SRADYIEILKYAKARHIEVIPE 116 (445)
T ss_pred CHHHHHHHHHHHHHcCCEEEEc
Confidence 7899999999999999999984
No 47
>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included
Probab=78.99 E-value=4.8 Score=26.36 Aligned_cols=29 Identities=3% Similarity=-0.094 Sum_probs=25.2
Q ss_pred cEEEEcCCHHHHHHHHHHHHhCCCcEEEE
Q psy4717 31 RYWCITESTEDVEKVVQVAHDHNLVIIPF 59 (90)
Q Consensus 31 ~~vv~P~s~~~v~~vv~~a~~~~i~v~~~ 59 (90)
-.|+.|.+.+|+..++++|-+..-|++.+
T Consensus 125 ~~v~~Ps~~~~~~~ll~~a~~~~~P~~ir 153 (156)
T cd07033 125 MTVLRPADANETAAALEAALEYDGPVYIR 153 (156)
T ss_pred CEEEecCCHHHHHHHHHHHHhCCCCEEEE
Confidence 35799999999999999999887787765
No 48
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=78.45 E-value=4.2 Score=28.40 Aligned_cols=28 Identities=29% Similarity=0.507 Sum_probs=23.8
Q ss_pred cCccEEEEcCCHHHHHHHHHHHHhCCCcEEE
Q psy4717 28 IGTRYWCITESTEDVEKVVQVAHDHNLVIIP 58 (90)
Q Consensus 28 ~~p~~vv~P~s~~~v~~vv~~a~~~~i~v~~ 58 (90)
.++++++.|.... +++++|++++++++|
T Consensus 79 aGA~FivsP~~~~---~v~~~~~~~~i~~iP 106 (204)
T TIGR01182 79 AGAQFIVSPGLTP---ELAKHAQDHGIPIIP 106 (204)
T ss_pred cCCCEEECCCCCH---HHHHHHHHcCCcEEC
Confidence 4589999998855 667889999999999
No 49
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=76.95 E-value=6.3 Score=28.64 Aligned_cols=28 Identities=21% Similarity=0.423 Sum_probs=22.2
Q ss_pred CCHHHHHHHHHHHHhCC------CcEEEEcCCCC
Q psy4717 37 ESTEDVEKVVQVAHDHN------LVIIPFGGGTN 64 (90)
Q Consensus 37 ~s~~~v~~vv~~a~~~~------i~v~~~G~G~n 64 (90)
..+++|.+.++.+++.+ +=++.+|||+-
T Consensus 55 ~A~~~I~~al~~~~~~~~~~~~Dviii~RGGGs~ 88 (319)
T PF02601_consen 55 GAAASIVSALRKANEMGQADDFDVIIIIRGGGSI 88 (319)
T ss_pred chHHHHHHHHHHHHhccccccccEEEEecCCCCh
Confidence 44689999999998654 66888999984
No 50
>PF02779 Transket_pyr: Transketolase, pyrimidine binding domain; InterPro: IPR005475 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 2BFF_B 2BEV_B 1OLS_B 1V16_B 2BFD_B 1V1M_B 2BFC_B 1X80_B 1X7W_B 1OLX_B ....
Probab=75.22 E-value=7 Score=26.04 Aligned_cols=33 Identities=3% Similarity=-0.063 Sum_probs=26.4
Q ss_pred cEEEEcCCHHHHHHHHHHHHh--CCCcEEEEcCCC
Q psy4717 31 RYWCITESTEDVEKVVQVAHD--HNLVIIPFGGGT 63 (90)
Q Consensus 31 ~~vv~P~s~~~v~~vv~~a~~--~~i~v~~~G~G~ 63 (90)
--|+.|.+.+|+..+++++-+ .+-|++++-.-.
T Consensus 139 ~~v~~Psd~~e~~~~l~~a~~~~~~~P~~ir~~r~ 173 (178)
T PF02779_consen 139 MKVVVPSDPAEAKGLLRAAIRRESDGPVYIREPRG 173 (178)
T ss_dssp EEEEE-SSHHHHHHHHHHHHHSSSSSEEEEEEESS
T ss_pred cccccCCCHHHHHHHHHHHHHhCCCCeEEEEeeHH
Confidence 458899999999999999999 667888875443
No 51
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=74.93 E-value=11 Score=29.43 Aligned_cols=58 Identities=10% Similarity=0.166 Sum_probs=40.5
Q ss_pred hhHHHHHHHHhccC--ccccceeeecCccEEEEcCCHHHHHHH------HHHHHhCCCcEEEEcCCCCC
Q psy4717 5 EDVEKVVQVAHDHN--LVVNHQAIFIGTRYWCITESTEDVEKV------VQVAHDHNLVIIPFGGGTNV 65 (90)
Q Consensus 5 ~~~~~~~~~~~~~~--~~~~~~~~~~~p~~vv~P~s~~~v~~v------v~~a~~~~i~v~~~G~G~n~ 65 (90)
+-||+|-..+..++ ++ =.--.+|-++.--.+..|++++ ++.|++.|+++++=|-||-.
T Consensus 206 e~fD~lLeI~~~yDVtlS---LGDglRPG~i~Da~D~aQi~El~~lgeL~~RA~e~gVQvMVEGPGHvP 271 (431)
T PRK13352 206 EHFDYLLEILKEYDVTLS---LGDGLRPGCIADATDRAQIQELITLGELVKRAREAGVQVMVEGPGHVP 271 (431)
T ss_pred HHHHHHHHHHHHhCeeee---ccCCcCCCccccCCcHHHHHHHHHHHHHHHHHHHcCCeEEEECCCCCC
Confidence 45666655554444 33 0012348899888999888765 47788999999999999954
No 52
>KOG2499|consensus
Probab=74.72 E-value=3.3 Score=32.88 Aligned_cols=35 Identities=26% Similarity=0.267 Sum_probs=25.9
Q ss_pred ccEEEEcCCHHHHHHHHHHHHhCCCcEEEE--cCCCCCCC
Q psy4717 30 TRYWCITESTEDVEKVVQVAHDHNLVIIPF--GGGTNVTG 67 (90)
Q Consensus 30 p~~vv~P~s~~~v~~vv~~a~~~~i~v~~~--G~G~n~~~ 67 (90)
+.-+.. .+||+++|++|+-+||+|+|= +-||-.++
T Consensus 243 ~~~vYT---~eDv~evV~yarlRGIRVlpEfD~PgHt~sW 279 (542)
T KOG2499|consen 243 PRHVYT---REDVSEVVEYARLRGIRVLPEFDTPGHTGSW 279 (542)
T ss_pred cceeec---HHHHHHHHHHHHhccceeeecccCCcccccc
Confidence 444554 499999999999999999984 33554444
No 53
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=74.05 E-value=7.8 Score=23.83 Aligned_cols=32 Identities=16% Similarity=0.228 Sum_probs=26.6
Q ss_pred EEEcCCHHHHHHHHHHHHhCCCcEEEEcCCCC
Q psy4717 33 WCITESTEDVEKVVQVAHDHNLVIIPFGGGTN 64 (90)
Q Consensus 33 vv~P~s~~~v~~vv~~a~~~~i~v~~~G~G~n 64 (90)
+-.+....++.++++.|++++++++.+....+
T Consensus 54 iS~sG~t~~~~~~~~~a~~~g~~vi~iT~~~~ 85 (128)
T cd05014 54 ISNSGETDELLNLLPHLKRRGAPIIAITGNPN 85 (128)
T ss_pred EeCCCCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 33456779999999999999999999987554
No 54
>PRK09971 xanthine dehydrogenase subunit XdhB; Provisional
Probab=73.83 E-value=4 Score=29.61 Aligned_cols=51 Identities=12% Similarity=0.094 Sum_probs=33.7
Q ss_pred EEEEcCCHHHHHHHHHHHHhCCCcEEEEcCCCCCCCCcccCCCCccceEEEEcCCCC
Q psy4717 32 YWCITESTEDVEKVVQVAHDHNLVIIPFGGGTNVTGAVACPENELRTIISLDTSQMQ 88 (90)
Q Consensus 32 ~vv~P~s~~~v~~vv~~a~~~~i~v~~~G~G~n~~~~~~~~~~~~~~gvvIdl~~m~ 88 (90)
-++.|+|.+|+.++++. +. ...+++|||.+..... .+......+||+.++.
T Consensus 6 ~~~~P~sl~Ea~~ll~~---~~-~a~ivaGGTdl~~~~~--~~~~~p~~lIdl~~i~ 56 (291)
T PRK09971 6 EYHEAATLEEAIELLAD---NP-QAKLIAGGTDVLIQLH--HHNDRYRHLVSIHNIA 56 (291)
T ss_pred ceeCCCCHHHHHHHHHh---CC-CCEEEeccchHHHHHh--CCCCCCCeEEEcCCCh
Confidence 47899999999988873 22 3567999998742221 1111236889998753
No 55
>PF13727 CoA_binding_3: CoA-binding domain; PDB: 3NKL_B.
Probab=73.71 E-value=14 Score=23.45 Aligned_cols=26 Identities=8% Similarity=0.276 Sum_probs=18.5
Q ss_pred EEEcC-CHHHHHHHHHHHHhCCCcEEE
Q psy4717 33 WCITE-STEDVEKVVQVAHDHNLVIIP 58 (90)
Q Consensus 33 vv~P~-s~~~v~~vv~~a~~~~i~v~~ 58 (90)
+..|. +.+++.++++.|+++++.+..
T Consensus 147 ial~~~~~~~i~~ii~~~~~~~v~v~~ 173 (175)
T PF13727_consen 147 IALPWSEEEQIKRIIEELENHGVRVRV 173 (175)
T ss_dssp E--TTS-HHHHHHHHHHHHTTT-EEEE
T ss_pred EEcCccCHHHHHHHHHHHHhCCCEEEE
Confidence 44555 478899999999999998764
No 56
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=71.28 E-value=14 Score=28.64 Aligned_cols=58 Identities=10% Similarity=0.170 Sum_probs=40.3
Q ss_pred hhHHHHHHHHhccC--ccccceeeecCccEEEEcCCHHHHHHH------HHHHHhCCCcEEEEcCCCCC
Q psy4717 5 EDVEKVVQVAHDHN--LVVNHQAIFIGTRYWCITESTEDVEKV------VQVAHDHNLVIIPFGGGTNV 65 (90)
Q Consensus 5 ~~~~~~~~~~~~~~--~~~~~~~~~~~p~~vv~P~s~~~v~~v------v~~a~~~~i~v~~~G~G~n~ 65 (90)
+-||+|-..+..++ ++ =.--.+|-++.--.+..|++++ ++.|++.|+++++=|-||-.
T Consensus 203 e~fD~lLeI~~~yDVtlS---LGDglRPG~i~DA~D~aQi~El~~lgeL~~rA~e~gVQvMVEGPGHvP 268 (423)
T TIGR00190 203 KNFDYILEIAKEYDVTLS---LGDGLRPGCIADATDRAQISELITLGELVERAREADVQCMVEGPGHVP 268 (423)
T ss_pred HHHHHHHHHHHHhCeeee---ccCCcCCCccccCCcHHHHHHHHHHHHHHHHHHHcCCeEEEECCCCCc
Confidence 44566655454444 33 1112348899989999888765 57789999999999999953
No 57
>cd07036 TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of the beta subunits of the E1 components of: human pyruvate dehydrogenase complex (E1- PDHc), the acetoin dehydrogenase complex (ADC), and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domain
Probab=70.93 E-value=10 Score=25.41 Aligned_cols=29 Identities=10% Similarity=0.044 Sum_probs=25.1
Q ss_pred cEEEEcCCHHHHHHHHHHHHhCCCcEEEE
Q psy4717 31 RYWCITESTEDVEKVVQVAHDHNLVIIPF 59 (90)
Q Consensus 31 ~~vv~P~s~~~v~~vv~~a~~~~i~v~~~ 59 (90)
-.|+.|.+.+|..++++++.+++-|++.+
T Consensus 136 ~~V~~Psd~~e~~~~l~~~~~~~~P~~~~ 164 (167)
T cd07036 136 LKVVAPSTPYDAKGLLKAAIRDDDPVIFL 164 (167)
T ss_pred CEEEeeCCHHHHHHHHHHHHhCCCcEEEE
Confidence 45889999999999999999888777654
No 58
>PRK14463 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=70.60 E-value=13 Score=27.89 Aligned_cols=65 Identities=17% Similarity=0.226 Sum_probs=42.0
Q ss_pred cchhHHHHHHHHhccCccccceeeecCccEEEEcCCHHHHHHHHHHHHhCCCcEEEEcC-CCCCCC
Q psy4717 3 STEDVEKVVQVAHDHNLVVNHQAIFIGTRYWCITESTEDVEKVVQVAHDHNLVIIPFGG-GTNVTG 67 (90)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~vv~P~s~~~v~~vv~~a~~~~i~v~~~G~-G~n~~~ 67 (90)
|-++++++++.........+---|+..+..-+.|.+.+++.++.+...++|+++.++-. |..+.+
T Consensus 264 s~e~~~~L~~ll~~l~~~vnlIPyn~~~~~~~~~ps~e~i~~f~~~L~~~gi~v~vR~~~G~di~a 329 (349)
T PRK14463 264 SLEDAKRLVRLLSDIPSKVNLIPFNEHEGCDFRSPTQEAIDRFHKYLLDKHVTVITRSSRGSDISA 329 (349)
T ss_pred CHHHHHHHHHHHhccCceEEEEecCCCCCCCCCCCCHHHHHHHHHHHHHCCceEEEeCCCCcchhh
Confidence 45678888887766542211111222233456777889999999999999999988843 665543
No 59
>COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism]
Probab=70.43 E-value=8.7 Score=31.23 Aligned_cols=30 Identities=17% Similarity=0.184 Sum_probs=24.9
Q ss_pred ccEEEEcCCHHHHHHHHHHHHhCC-CcEEEE
Q psy4717 30 TRYWCITESTEDVEKVVQVAHDHN-LVIIPF 59 (90)
Q Consensus 30 p~~vv~P~s~~~v~~vv~~a~~~~-i~v~~~ 59 (90)
|=..+.|.|+++|..++++|.++- .|++.+
T Consensus 152 ~yv~fKPGtIeqI~svi~IAka~P~~pIilq 182 (717)
T COG4981 152 PYVAFKPGTIEQIRSVIRIAKANPTFPIILQ 182 (717)
T ss_pred eeEEecCCcHHHHHHHHHHHhcCCCCceEEE
Confidence 556789999999999999999974 566654
No 60
>PRK09417 mogA molybdenum cofactor biosynthesis protein MogA; Provisional
Probab=70.07 E-value=14 Score=25.56 Aligned_cols=36 Identities=17% Similarity=0.175 Sum_probs=29.8
Q ss_pred cEEEEcCCHHHHHHHHHHHHh-CCCcEEEEcCCCCCC
Q psy4717 31 RYWCITESTEDVEKVVQVAHD-HNLVIIPFGGGTNVT 66 (90)
Q Consensus 31 ~~vv~P~s~~~v~~vv~~a~~-~~i~v~~~G~G~n~~ 66 (90)
...+.|.+.++|++.++-+.+ .+.-+++..||++..
T Consensus 43 ~~~iVpDd~~~I~~aL~~a~~~~~~DlIITTGGtg~g 79 (193)
T PRK09417 43 ETRLIPDEQDLIEQTLIELVDEMGCDLVLTTGGTGPA 79 (193)
T ss_pred EEEECCCCHHHHHHHHHHHhhcCCCCEEEECCCCCCC
Confidence 335779999999999977765 578999999999885
No 61
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=68.60 E-value=11 Score=26.07 Aligned_cols=28 Identities=18% Similarity=0.370 Sum_probs=21.2
Q ss_pred cCccEEEEcCCHHHHHHHHHHHHhCCCcEEE
Q psy4717 28 IGTRYWCITESTEDVEKVVQVAHDHNLVIIP 58 (90)
Q Consensus 28 ~~p~~vv~P~s~~~v~~vv~~a~~~~i~v~~ 58 (90)
.++++++.|.--++ ++++|++++++++|
T Consensus 79 aGA~FivSP~~~~~---v~~~~~~~~i~~iP 106 (196)
T PF01081_consen 79 AGAQFIVSPGFDPE---VIEYAREYGIPYIP 106 (196)
T ss_dssp HT-SEEEESS--HH---HHHHHHHHTSEEEE
T ss_pred cCCCEEECCCCCHH---HHHHHHHcCCcccC
Confidence 45999999976655 57889999999999
No 62
>COG0422 ThiC Thiamine biosynthesis protein ThiC [Coenzyme metabolism]
Probab=67.45 E-value=18 Score=28.03 Aligned_cols=37 Identities=8% Similarity=0.127 Sum_probs=31.3
Q ss_pred cCccEEEEcCCHHHHHH------HHHHHHhCCCcEEEEcCCCC
Q psy4717 28 IGTRYWCITESTEDVEK------VVQVAHDHNLVIIPFGGGTN 64 (90)
Q Consensus 28 ~~p~~vv~P~s~~~v~~------vv~~a~~~~i~v~~~G~G~n 64 (90)
.+|-++.-.++..|+++ +++.|+++++++++=|-||-
T Consensus 226 lRPG~i~DA~D~aQ~~EL~tlgeL~krA~~~gVQvmvEGPGHv 268 (432)
T COG0422 226 LRPGCIADANDEAQFAELITLGELTKRAWEAGVQVMVEGPGHV 268 (432)
T ss_pred CCCCcccCCccHHHHHHHHHHHHHHHHHHHcCCEEEEECCCcC
Confidence 34889988899888765 56789999999999999984
No 63
>PRK04322 peptidyl-tRNA hydrolase; Provisional
Probab=67.02 E-value=18 Score=22.88 Aligned_cols=34 Identities=15% Similarity=0.071 Sum_probs=28.7
Q ss_pred ccEEEEcCCHHHHHHHHHHHHhCCCcEE-EEcCCC
Q psy4717 30 TRYWCITESTEDVEKVVQVAHDHNLVII-PFGGGT 63 (90)
Q Consensus 30 p~~vv~P~s~~~v~~vv~~a~~~~i~v~-~~G~G~ 63 (90)
+..++...|++++.++.+.|.+.+++.. ++-.|.
T Consensus 48 ~Kvvlkv~~~~el~~l~~~a~~~~l~~~~v~DAG~ 82 (113)
T PRK04322 48 KKVVLKVNSEEELLELKEKAERLGLPTALIRDAGL 82 (113)
T ss_pred cEEEEeCCCHHHHHHHHHHHHHcCCCEEEEEeCCC
Confidence 8889999999999999999999999854 445554
No 64
>TIGR02963 xanthine_xdhA xanthine dehydrogenase, small subunit. Members of this protein family are the small subunit (or, in eukaryotes, the N-terminal domain) of xanthine dehydrogenase, an enzyme of purine catabolism via urate. The small subunit contains both an FAD and a 2Fe-2S cofactor. Aldehyde oxidase (retinal oxidase) appears to have arisen as a neofunctionalization among xanthine dehydrogenases in eukaryotes and
Probab=66.91 E-value=10 Score=29.54 Aligned_cols=53 Identities=15% Similarity=0.098 Sum_probs=35.7
Q ss_pred CccEEEEcCCHHHHHHHHHHHHhCCCcEEEEcCCCCCCCCcccCCCCccceEEEEcCCC
Q psy4717 29 GTRYWCITESTEDVEKVVQVAHDHNLVIIPFGGGTNVTGAVACPENELRTIISLDTSQM 87 (90)
Q Consensus 29 ~p~~vv~P~s~~~v~~vv~~a~~~~i~v~~~G~G~n~~~~~~~~~~~~~~gvvIdl~~m 87 (90)
...-+++|+|.+|+.++++- +. ...+++|||.+.-... .+......+||++++
T Consensus 191 ~~~~~~~P~sl~Ea~~ll~~---~~-~a~lvAGGTdl~~~~~--~~~~~~~~lIdl~~I 243 (467)
T TIGR02963 191 GGERFIAPTTLDDLAALKAA---HP-DARIVAGSTDVGLWVT--KQMRDLPDVIYVGQV 243 (467)
T ss_pred CCceEECCCCHHHHHHHHhh---CC-CCEEEecCcchHHHHh--cCCCCCCeEEECCCC
Confidence 45568999999999988863 32 3577899998843221 111123689999875
No 65
>PF02603 Hpr_kinase_N: HPr Serine kinase N terminus; InterPro: IPR011126 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents the N-terminal region of Hpr Serine/threonine kinase PtsK. This kinase is the sensor in a multicomponent phosphorelay system in control of carbon catabolic repression in bacteria []. This kinase in unusual in that it recognises the tertiary structure of its target and is a member of a novel family unrelated to any previously described protein phosphorylating enzymes []. X-ray analysis of the full-length crystalline enzyme from Staphylococcus xylosus at a resolution of 1.95 A shows the enzyme to consist of two clearly separated domains that are assembled in a hexameric structure resembling a three-bladed propeller. The blades are formed by two N-terminal domains each, and the compact central hub assembles the C-terminal kinase domains []. ; GO: 0000155 two-component sensor activity, 0004672 protein kinase activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006109 regulation of carbohydrate metabolic process; PDB: 1KNX_B 1KO7_A.
Probab=66.75 E-value=5.4 Score=25.47 Aligned_cols=34 Identities=12% Similarity=0.173 Sum_probs=23.2
Q ss_pred eecCccEEEEcCCHHHHHHHHHHHHhCCCcEEEE
Q psy4717 26 IFIGTRYWCITESTEDVEKVVQVAHDHNLVIIPF 59 (90)
Q Consensus 26 ~~~~p~~vv~P~s~~~v~~vv~~a~~~~i~v~~~ 59 (90)
+...|-|++.-++.+--..+++.|+++++|+.--
T Consensus 78 ~~~~~P~iIvt~~~~~p~~l~e~a~~~~ipll~t 111 (127)
T PF02603_consen 78 FSYNPPCIIVTRGLEPPPELIELAEKYNIPLLRT 111 (127)
T ss_dssp CTTT-S-EEEETTT---HHHHHHHHHCT--EEEE
T ss_pred hCCCCCEEEEECcCCCCHHHHHHHHHhCCcEEEc
Confidence 4456889999999999999999999999999864
No 66
>PF00994 MoCF_biosynth: Probable molybdopterin binding domain; InterPro: IPR001453 Eukaryotic and prokaryotic molybdoenzymes require a molybdopterin cofactor (MoCF) for their activity. The biosynthesis of this cofactor involves a complex multistep enzymatic pathway. One of the eukaryotic proteins involved in this pathway is the Drosophila protein cinnamon [] which is highly similar to gephyrin, a rat microtubule-associated protein which was thought to anchor the glycine receptor to subsynaptic microtubules. Cinnamon and gephyrin are evolutionary related, in their N-terminal half, to the Escherichia coli MoCF biosynthesis proteins mog/chlG and moaB/chlA2 and, in their C-terminal half, to E. coli moeA/chlE.; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process; PDB: 3TCR_B 1O8O_B 1O8Q_G 1EAV_D 1O8N_C 1UUX_A 1UUY_A 2G2C_A 2G4R_C 3K6A_F ....
Probab=66.48 E-value=23 Score=22.57 Aligned_cols=36 Identities=19% Similarity=0.357 Sum_probs=29.5
Q ss_pred ccEEEEcCCHHHHHHHHHHHHhCCCcEEEEcCCCCCC
Q psy4717 30 TRYWCITESTEDVEKVVQVAHDHNLVIIPFGGGTNVT 66 (90)
Q Consensus 30 p~~vv~P~s~~~v~~vv~~a~~~~i~v~~~G~G~n~~ 66 (90)
....+.|.+.+++++.++.+.+.. .+++..||++..
T Consensus 34 ~~~~~v~Dd~~~i~~~l~~~~~~~-D~VittGG~g~~ 69 (144)
T PF00994_consen 34 IRYGIVPDDPDAIKEALRRALDRA-DLVITTGGTGPG 69 (144)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHTT-SEEEEESSSSSS
T ss_pred eEEEEECCCHHHHHHHHHhhhccC-CEEEEcCCcCcc
Confidence 345688999999999998776654 899999999874
No 67
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=66.18 E-value=21 Score=23.68 Aligned_cols=36 Identities=19% Similarity=0.244 Sum_probs=29.6
Q ss_pred cEEEEcCCHHHHHHHHHHHH-hCCCcEEEEcCCCCCC
Q psy4717 31 RYWCITESTEDVEKVVQVAH-DHNLVIIPFGGGTNVT 66 (90)
Q Consensus 31 ~~vv~P~s~~~v~~vv~~a~-~~~i~v~~~G~G~n~~ 66 (90)
..-+.|.+.+++++.++-+. ..+.-+++..||++..
T Consensus 40 ~~~iv~Dd~~~i~~~l~~~~~~~~~DlVIttGGtg~g 76 (163)
T TIGR02667 40 DRAIVKDDIYQIRAQVSAWIADPDVQVILITGGTGFT 76 (163)
T ss_pred EEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCcCCC
Confidence 44567999999999998775 3678899999999884
No 68
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=66.03 E-value=7.9 Score=29.13 Aligned_cols=28 Identities=25% Similarity=0.434 Sum_probs=24.0
Q ss_pred CHHHHHHHHHHHHhCCCcEEE-EcCCCCC
Q psy4717 38 STEDVEKVVQVAHDHNLVIIP-FGGGTNV 65 (90)
Q Consensus 38 s~~~v~~vv~~a~~~~i~v~~-~G~G~n~ 65 (90)
+.++|.++++.+++++..+++ +||||.+
T Consensus 73 ~~~~v~~~~~~~~~~~~D~IiaiGGGS~i 101 (383)
T PRK09860 73 TTENVAAGLKLLKENNCDSVISLGGGSPH 101 (383)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCchHH
Confidence 578999999999999987555 9999965
No 69
>PF01964 ThiC: ThiC family; InterPro: IPR002817 ThiC is found within the thiamin biosynthesis operon. ThiC is involved in thiamin biosynthesis []. The precise catalytic function of ThiC is still not known. ThiC participates in the formation of 4-Amino-5-hydroxymethyl-2-methylpyrimidine from AIR, an intermediate in the de novo pyrimidine biosynthesis.; GO: 0009228 thiamine biosynthetic process; PDB: 3EPO_A 3EPN_B 3EPM_B.
Probab=65.82 E-value=9 Score=29.73 Aligned_cols=59 Identities=10% Similarity=0.193 Sum_probs=33.5
Q ss_pred hhHHHHHHHHhccCccccc-eeeecCccEEEEcCCHHHHHHH------HHHHHhCCCcEEEEcCCCCC
Q psy4717 5 EDVEKVVQVAHDHNLVVNH-QAIFIGTRYWCITESTEDVEKV------VQVAHDHNLVIIPFGGGTNV 65 (90)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~-~~~~~~p~~vv~P~s~~~v~~v------v~~a~~~~i~v~~~G~G~n~ 65 (90)
+.||+|-..+..++.. - =.--.+|-++.-..+..|++++ ++.|++.|+++++=|-||-.
T Consensus 202 ~~fD~lLeI~k~yDVt--LSLGDglRPG~i~Da~D~aQi~EL~~lgeL~~rA~e~gVQvMVEGPGHVP 267 (420)
T PF01964_consen 202 EHFDRLLEIAKEYDVT--LSLGDGLRPGCIADATDRAQIQELIILGELVKRAREAGVQVMVEGPGHVP 267 (420)
T ss_dssp HTHHHHHHHHTTTT-E--EEE--TT--SSGGGTT-HHHHHHHHHHHHHHHHHHHTT--EEEEE-SB--
T ss_pred HhHHHHHHHHHHhCee--EecccccCCCCcCCCCcHHHHHHHHHHHHHHHHHHHCCCeEEeeCCCCCC
Confidence 4567776656555432 0 0011337777777888887654 57789999999999999954
No 70
>smart00642 Aamy Alpha-amylase domain.
Probab=65.68 E-value=9.9 Score=25.34 Aligned_cols=22 Identities=27% Similarity=0.487 Sum_probs=19.9
Q ss_pred CCHHHHHHHHHHHHhCCCcEEE
Q psy4717 37 ESTEDVEKVVQVAHDHNLVIIP 58 (90)
Q Consensus 37 ~s~~~v~~vv~~a~~~~i~v~~ 58 (90)
.+.+|++++++.|+++|+.++.
T Consensus 67 Gt~~d~~~lv~~~h~~Gi~vil 88 (166)
T smart00642 67 GTMEDFKELVDAAHARGIKVIL 88 (166)
T ss_pred CCHHHHHHHHHHHHHCCCEEEE
Confidence 5789999999999999998874
No 71
>PF13378 MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FCP_B 3P0W_D 3VFC_A 3VDG_A 3FJ4_B 3CT2_B 3DGB_A 3V3W_A 3V4B_A 3NO1_E ....
Probab=65.09 E-value=12 Score=22.69 Aligned_cols=27 Identities=11% Similarity=0.335 Sum_probs=22.7
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEEcCCC
Q psy4717 37 ESTEDVEKVVQVAHDHNLVIIPFGGGT 63 (90)
Q Consensus 37 ~s~~~v~~vv~~a~~~~i~v~~~G~G~ 63 (90)
....+..++.++|.+++++++|-+.++
T Consensus 30 GGit~~~~i~~~A~~~gi~~~~h~~~~ 56 (111)
T PF13378_consen 30 GGITEALRIAALAEAHGIPVMPHSMES 56 (111)
T ss_dssp TSHHHHHHHHHHHHHTT-EEEEBSSSS
T ss_pred CCHHHHHHHHHHHHHhCCCEEecCCCC
Confidence 478999999999999999999977644
No 72
>PRK15138 aldehyde reductase; Provisional
Probab=64.48 E-value=8.1 Score=29.14 Aligned_cols=29 Identities=21% Similarity=0.488 Sum_probs=24.2
Q ss_pred CCHHHHHHHHHHHHhCCCcEEE-EcCCCCC
Q psy4717 37 ESTEDVEKVVQVAHDHNLVIIP-FGGGTNV 65 (90)
Q Consensus 37 ~s~~~v~~vv~~a~~~~i~v~~-~G~G~n~ 65 (90)
.+.++|.++++.+++.+..+++ +|||+.+
T Consensus 69 p~~~~v~~~~~~~~~~~~D~IIaiGGGS~i 98 (387)
T PRK15138 69 PTYETLMKAVKLVREEKITFLLAVGGGSVL 98 (387)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCChHHH
Confidence 3568999999999999987555 9999976
No 73
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=64.25 E-value=15 Score=23.07 Aligned_cols=35 Identities=11% Similarity=0.029 Sum_probs=27.9
Q ss_pred ccEEEEcCCHHHHHHHHHHHHhCCCcEEEEcCCCC
Q psy4717 30 TRYWCITESTEDVEKVVQVAHDHNLVIIPFGGGTN 64 (90)
Q Consensus 30 p~~vv~P~s~~~v~~vv~~a~~~~i~v~~~G~G~n 64 (90)
+++++--++.+.+.+.+++|.++++|++.--.|-+
T Consensus 68 ~DVvIDfT~p~~~~~~~~~~~~~g~~~ViGTTG~~ 102 (124)
T PF01113_consen 68 ADVVIDFTNPDAVYDNLEYALKHGVPLVIGTTGFS 102 (124)
T ss_dssp -SEEEEES-HHHHHHHHHHHHHHT-EEEEE-SSSH
T ss_pred CCEEEEcCChHHhHHHHHHHHhCCCCEEEECCCCC
Confidence 88999999999999999999999999998766653
No 74
>PRK13575 3-dehydroquinate dehydratase; Provisional
Probab=64.18 E-value=17 Score=25.73 Aligned_cols=34 Identities=9% Similarity=0.162 Sum_probs=28.3
Q ss_pred ccEEEEcCCHHHHHHHHHHHHh----CCCcEEEEcCCC
Q psy4717 30 TRYWCITESTEDVEKVVQVAHD----HNLVIIPFGGGT 63 (90)
Q Consensus 30 p~~vv~P~s~~~v~~vv~~a~~----~~i~v~~~G~G~ 63 (90)
+..++.|++.+|+..++++..+ .+.|++.++-|-
T Consensus 159 ~KiAv~~~~~~Dvl~Ll~~~~~~~~~~~~p~i~i~MG~ 196 (238)
T PRK13575 159 VKLAVMPHNKNDVLNLLQAMSTFSDTMDCKVVGISMSK 196 (238)
T ss_pred EEEEecCCCHHHHHHHHHHHHHHHhccCCCEEEEeCCC
Confidence 6788999999999999998654 457888888776
No 75
>PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A ....
Probab=64.15 E-value=8.5 Score=26.51 Aligned_cols=35 Identities=17% Similarity=0.339 Sum_probs=29.0
Q ss_pred ccEEEEcCCHHHHHHHHHHHHhCC----CcEEEEcCCCC
Q psy4717 30 TRYWCITESTEDVEKVVQVAHDHN----LVIIPFGGGTN 64 (90)
Q Consensus 30 p~~vv~P~s~~~v~~vv~~a~~~~----i~v~~~G~G~n 64 (90)
.+.++.|++.+|+.+++++..+.. .|++.++-|..
T Consensus 147 vKia~~~~~~~D~~~l~~~~~~~~~~~~~p~i~~~MG~~ 185 (224)
T PF01487_consen 147 VKIAVMANSPEDVLRLLRFTKEFREEPDIPVIAISMGEL 185 (224)
T ss_dssp EEEEEE-SSHHHHHHHHHHHHHHHHHTSSEEEEEEETGG
T ss_pred EEEEeccCCHHHHHHHHHHHHHHhhccCCcEEEEEcCCC
Confidence 678899999999999999887754 89999988763
No 76
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=63.91 E-value=26 Score=22.81 Aligned_cols=36 Identities=17% Similarity=0.337 Sum_probs=29.0
Q ss_pred cEEEEcCCHHHHHHHHHHHHhC-CCcEEEEcCCCCCC
Q psy4717 31 RYWCITESTEDVEKVVQVAHDH-NLVIIPFGGGTNVT 66 (90)
Q Consensus 31 ~~vv~P~s~~~v~~vv~~a~~~-~i~v~~~G~G~n~~ 66 (90)
...+.|.+.+++.+.++.+.+. +.-+++..||++..
T Consensus 38 ~~~~v~Dd~~~i~~~l~~~~~~~~~DlVittGG~s~g 74 (152)
T cd00886 38 AYEIVPDDKDEIREALIEWADEDGVDLILTTGGTGLA 74 (152)
T ss_pred eEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCcCCC
Confidence 4567899999999999877653 67799999999874
No 77
>PRK14466 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=63.80 E-value=23 Score=26.72 Aligned_cols=65 Identities=11% Similarity=0.050 Sum_probs=45.4
Q ss_pred cchhHHHHHHHHhccCccccceeeecCccEEEEcCCHHHHHHHHHHHHhCCCcEEEEcC-CCCCCC
Q psy4717 3 STEDVEKVVQVAHDHNLVVNHQAIFIGTRYWCITESTEDVEKVVQVAHDHNLVIIPFGG-GTNVTG 67 (90)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~vv~P~s~~~v~~vv~~a~~~~i~v~~~G~-G~n~~~ 67 (90)
|.++...|++...+.....|---|...|..-+.|.+.+.+.+..+...++|+++.++-. |..+.+
T Consensus 264 ~~e~a~~L~~ll~~~~~~VNLIp~Np~~~~~~~~~s~~~~~~F~~~L~~~gi~~tvR~s~G~dI~a 329 (345)
T PRK14466 264 SLKHAKELVKLLRGIDCRVNLIRFHAIPGVDLEGSDMARMEAFRDYLTSHGVFTTIRASRGEDIFA 329 (345)
T ss_pred CHHHHHHHHHHHcCCCceEEEEecCCCCCCCCcCCCHHHHHHHHHHHHHCCCcEEEeCCCCCchhh
Confidence 45678888887765543322222333345568899999999999999999999998844 665543
No 78
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=62.79 E-value=7.9 Score=26.74 Aligned_cols=22 Identities=27% Similarity=0.499 Sum_probs=20.0
Q ss_pred CCHHHHHHHHHHHHhCCCcEEE
Q psy4717 37 ESTEDVEKVVQVAHDHNLVIIP 58 (90)
Q Consensus 37 ~s~~~v~~vv~~a~~~~i~v~~ 58 (90)
.|.+|++++++.|+++|+.|+.
T Consensus 49 Gt~~d~~~Lv~~~h~~gi~Vil 70 (316)
T PF00128_consen 49 GTMEDFKELVDAAHKRGIKVIL 70 (316)
T ss_dssp BHHHHHHHHHHHHHHTTCEEEE
T ss_pred chhhhhhhhhhccccccceEEE
Confidence 5789999999999999999875
No 79
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=62.46 E-value=11 Score=26.62 Aligned_cols=28 Identities=18% Similarity=0.332 Sum_probs=23.2
Q ss_pred cCccEEEEcCCHHHHHHHHHHHHhCCCcEEE
Q psy4717 28 IGTRYWCITESTEDVEKVVQVAHDHNLVIIP 58 (90)
Q Consensus 28 ~~p~~vv~P~s~~~v~~vv~~a~~~~i~v~~ 58 (90)
.+++++|.|....+| ++.|+++++|++|
T Consensus 84 aGa~fiVsP~~~~ev---~~~a~~~~ip~~P 111 (211)
T COG0800 84 AGAQFIVSPGLNPEV---AKAANRYGIPYIP 111 (211)
T ss_pred cCCCEEECCCCCHHH---HHHHHhCCCcccC
Confidence 358999999888765 6779999999988
No 80
>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional
Probab=62.35 E-value=19 Score=25.58 Aligned_cols=34 Identities=15% Similarity=0.299 Sum_probs=28.9
Q ss_pred ccEEEEcCCHHHHHHHHHHHHh-----CCCcEEEEcCCC
Q psy4717 30 TRYWCITESTEDVEKVVQVAHD-----HNLVIIPFGGGT 63 (90)
Q Consensus 30 p~~vv~P~s~~~v~~vv~~a~~-----~~i~v~~~G~G~ 63 (90)
...++.|++.+|+.+++++..+ .+.|++.++-|.
T Consensus 169 vKia~~a~~~~D~~~ll~~~~~~~~~~~~~P~i~~~MG~ 207 (253)
T PRK02412 169 VKIAVMPQSEQDVLTLLNATREMKELYADQPLITMSMGK 207 (253)
T ss_pred EEEEecCCCHHHHHHHHHHHHHHHhcCCCCCEEEEeCCC
Confidence 5688999999999999988754 468999999887
No 81
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=61.82 E-value=9 Score=26.79 Aligned_cols=29 Identities=17% Similarity=0.331 Sum_probs=24.1
Q ss_pred ecCccEEEEcCCHHHHHHHHHHHHhCCCcEEE
Q psy4717 27 FIGTRYWCITESTEDVEKVVQVAHDHNLVIIP 58 (90)
Q Consensus 27 ~~~p~~vv~P~s~~~v~~vv~~a~~~~i~v~~ 58 (90)
..++++++.|.... +++++|++.+++++|
T Consensus 85 ~aGA~FivsP~~~~---~vi~~a~~~~i~~iP 113 (212)
T PRK05718 85 EAGAQFIVSPGLTP---PLLKAAQEGPIPLIP 113 (212)
T ss_pred HcCCCEEECCCCCH---HHHHHHHHcCCCEeC
Confidence 34589999998776 778889999999987
No 82
>TIGR03195 4hydrxCoA_B 4-hydroxybenzoyl-CoA reductase, beta subunit. This model represents the second largest chain, beta, of the enzyme 4-hydroxybenzoyl-CoA reductase. In species capable of degrading various aromatic compounds by way of benzoyl-CoA, this enzyme can convert 4-hydroxybenzoyl-CoA to benzoyl-CoA.
Probab=61.61 E-value=9.9 Score=28.30 Aligned_cols=50 Identities=16% Similarity=0.161 Sum_probs=32.3
Q ss_pred EEEEcCCHHHHHHHHHHHHhCCCcEEEEcCCCCCCCCcccCCCCccceEEEEcCCC
Q psy4717 32 YWCITESTEDVEKVVQVAHDHNLVIIPFGGGTNVTGAVACPENELRTIISLDTSQM 87 (90)
Q Consensus 32 ~vv~P~s~~~v~~vv~~a~~~~i~v~~~G~G~n~~~~~~~~~~~~~~gvvIdl~~m 87 (90)
-++.|+|.+|+.++++- ++ .-.+++|||.+....- .+......+||+.++
T Consensus 6 ~~~~P~sl~eA~~ll~~---~~-~a~ivaGGTdl~~~~~--~~~~~p~~lIdi~~I 55 (321)
T TIGR03195 6 RTLRPASLADAVAALAA---HP-AARPLAGGTDLLPNLR--RGLGQPETLVDLTGI 55 (321)
T ss_pred eEECCCCHHHHHHHHhh---CC-CCEEEEccchHHHHHh--cccCCCCeEEECCCC
Confidence 47899999999988763 32 2457999997732221 111113688998765
No 83
>TIGR00048 radical SAM enzyme, Cfr family. A Staphylococcus sciuri plasmid-borne member of this family, Cfr, has been identified as essential to transferrable resistance to chloramphenicol and florfenicol by an unknown mechanism. A 14-15 residue cluster with four perfectly conserved Cys residues suggests this protein may be an enzyme with an iron-sulfur cluster. The Cys cluster is part of the radical SAM domain, suggested to provide a general mechanism by which the Fe-S center cleaves S-adenosylmethionine to initiate radical-based catalysis. Members of this family lack apparent transmembrane domains.
Probab=61.59 E-value=31 Score=25.88 Aligned_cols=67 Identities=12% Similarity=0.091 Sum_probs=42.5
Q ss_pred cchhHHHHHHHHhccCccccceeeecCccEEEEcCCHHHHHHHHHHHHhCCCcEEEEcC-CCCCCCCc
Q psy4717 3 STEDVEKVVQVAHDHNLVVNHQAIFIGTRYWCITESTEDVEKVVQVAHDHNLVIIPFGG-GTNVTGAV 69 (90)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~vv~P~s~~~v~~vv~~a~~~~i~v~~~G~-G~n~~~~~ 69 (90)
|-+++.+|++...+.....+---|..-+..-+.+.+.+++.++.++..++|+++.++-. |..+.+++
T Consensus 272 s~e~a~~La~llk~l~~~VnLIPynp~~~~~~~~ps~e~i~~f~~~L~~~gi~v~iR~~~G~di~aaC 339 (355)
T TIGR00048 272 QVEHAEELAELLKGTKCKVNLIPWNPFPEADYERPSNEQIDRFAKTLMSYGFTVTIRKSRGDDIDAAC 339 (355)
T ss_pred CHHHHHHHHHHHhcCCCceEEEecccCCCCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCcchhhcC
Confidence 34677888886665532211111222233334667889999999999999999988644 77665443
No 84
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=61.55 E-value=26 Score=22.54 Aligned_cols=35 Identities=23% Similarity=0.408 Sum_probs=28.8
Q ss_pred cEEEEcCCHHHHHHHHHHHHhCCCcEEEEcCCCCCC
Q psy4717 31 RYWCITESTEDVEKVVQVAHDHNLVIIPFGGGTNVT 66 (90)
Q Consensus 31 ~~vv~P~s~~~v~~vv~~a~~~~i~v~~~G~G~n~~ 66 (90)
...+.|.+.+++.+.++.+.+ +.-+++..||++..
T Consensus 45 ~~~~v~Dd~~~i~~~l~~~~~-~~DliIttGG~g~g 79 (144)
T TIGR00177 45 RLGIVPDDPEEIREILRKAVD-EADVVLTTGGTGVG 79 (144)
T ss_pred EEeecCCCHHHHHHHHHHHHh-CCCEEEECCCCCCC
Confidence 455789999999999987755 68899999999874
No 85
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=61.50 E-value=13 Score=27.75 Aligned_cols=28 Identities=21% Similarity=0.419 Sum_probs=23.6
Q ss_pred CHHHHHHHHHHHHhCCCcEEE-EcCCCCC
Q psy4717 38 STEDVEKVVQVAHDHNLVIIP-FGGGTNV 65 (90)
Q Consensus 38 s~~~v~~vv~~a~~~~i~v~~-~G~G~n~ 65 (90)
+.+.|.++++.+++.+.-+++ +||||-+
T Consensus 68 ~~~~v~~~~~~~~~~~~D~IiavGGGS~i 96 (380)
T cd08185 68 TTTTVMEGAALAREEGCDFVVGLGGGSSM 96 (380)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCccHH
Confidence 568899999999999986555 9999965
No 86
>PF01981 PTH2: Peptidyl-tRNA hydrolase PTH2; InterPro: IPR002833 Peptidyl-tRNA hydrolases are enzymes that release tRNAs from peptidyl-tRNA during translation.; GO: 0004045 aminoacyl-tRNA hydrolase activity; PDB: 1RLK_A 1XTY_C 2ZV3_I 2D3K_A 1WN2_A 1Q7S_A 3ERJ_B 1RZW_A.
Probab=61.42 E-value=25 Score=21.99 Aligned_cols=37 Identities=14% Similarity=0.084 Sum_probs=29.7
Q ss_pred CccEEEEcCCHHHHHHHHHHHHhCCCcEE-EEcCCCCC
Q psy4717 29 GTRYWCITESTEDVEKVVQVAHDHNLVII-PFGGGTNV 65 (90)
Q Consensus 29 ~p~~vv~P~s~~~v~~vv~~a~~~~i~v~-~~G~G~n~ 65 (90)
.+..++...|.+++.++.+.|.+.+++.. ++-.|..-
T Consensus 50 ~~Kivlkv~~e~~L~~l~~~a~~~gl~~~~i~Dag~Te 87 (116)
T PF01981_consen 50 QKKIVLKVPSEEELLELAKKAKEAGLPHYLIRDAGRTE 87 (116)
T ss_dssp TSEEEEEESSHHHHHHHHHHHHHTT-SEEEEEETSSSS
T ss_pred CceEEEEeCCHHHHHHHHHHHHHCCCCEEEEEECCCCc
Confidence 37889999999999999999999999864 45566543
No 87
>PRK09284 thiamine biosynthesis protein ThiC; Provisional
Probab=61.26 E-value=28 Score=28.23 Aligned_cols=37 Identities=11% Similarity=0.231 Sum_probs=31.5
Q ss_pred cCccEEEEcCCHHHHHHH------HHHHHhCCCcEEEEcCCCC
Q psy4717 28 IGTRYWCITESTEDVEKV------VQVAHDHNLVIIPFGGGTN 64 (90)
Q Consensus 28 ~~p~~vv~P~s~~~v~~v------v~~a~~~~i~v~~~G~G~n 64 (90)
.+|-++.-..+..|++++ .+.|+++++++++=|-||-
T Consensus 378 LRPG~iaDA~D~AQ~~EL~tLGELt~rA~e~gVQVMIEGPGHV 420 (607)
T PRK09284 378 LRPGSIADANDEAQFAELETLGELTKIAWEHDVQVMIEGPGHV 420 (607)
T ss_pred cCCCccccCCcHHHHHHHHHHHHHHHHHHHcCCeEEEECCCCC
Confidence 349999999999888765 5788999999999999994
No 88
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=61.15 E-value=8.3 Score=24.05 Aligned_cols=29 Identities=14% Similarity=0.318 Sum_probs=22.1
Q ss_pred EcCCHHHHHHHHHHHHhCCCcEEEEcCCC
Q psy4717 35 ITESTEDVEKVVQVAHDHNLVIIPFGGGT 63 (90)
Q Consensus 35 ~P~s~~~v~~vv~~a~~~~i~v~~~G~G~ 63 (90)
.+-+..+..++++||.++++.+++.|-=.
T Consensus 44 ~~~~~~d~~~l~~~a~~~~idlvvvGPE~ 72 (100)
T PF02844_consen 44 VPIDITDPEELADFAKENKIDLVVVGPEA 72 (100)
T ss_dssp E-S-TT-HHHHHHHHHHTTESEEEESSHH
T ss_pred cCCCCCCHHHHHHHHHHcCCCEEEECChH
Confidence 33478899999999999999999988643
No 89
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=61.14 E-value=13 Score=27.64 Aligned_cols=29 Identities=24% Similarity=0.397 Sum_probs=24.0
Q ss_pred CCHHHHHHHHHHHHhCCCcEEE-EcCCCCC
Q psy4717 37 ESTEDVEKVVQVAHDHNLVIIP-FGGGTNV 65 (90)
Q Consensus 37 ~s~~~v~~vv~~a~~~~i~v~~-~G~G~n~ 65 (90)
.+.+.|.++++.+++.+..+++ +|||+.+
T Consensus 67 p~~~~v~~~~~~~~~~~~d~IIaiGGGS~~ 96 (374)
T cd08189 67 PTIENVEAGLALYRENGCDAILAVGGGSVI 96 (374)
T ss_pred cCHHHHHHHHHHHHhcCCCEEEEeCCccHH
Confidence 4578899999999999886554 9999966
No 90
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=61.11 E-value=18 Score=20.38 Aligned_cols=26 Identities=15% Similarity=0.340 Sum_probs=21.2
Q ss_pred EcCCHHHHHHHHHHHHhCCCcEEEEc
Q psy4717 35 ITESTEDVEKVVQVAHDHNLVIIPFG 60 (90)
Q Consensus 35 ~P~s~~~v~~vv~~a~~~~i~v~~~G 60 (90)
.+....++.++++.++++|.+++.+.
T Consensus 56 ~sg~t~~~~~~~~~a~~~g~~ii~it 81 (87)
T cd04795 56 YSGRTEELLAALEIAKELGIPVIAIT 81 (87)
T ss_pred CCCCCHHHHHHHHHHHHcCCeEEEEe
Confidence 35567889999999999999887764
No 91
>PLN02444 HMP-P synthase
Probab=61.10 E-value=29 Score=28.30 Aligned_cols=38 Identities=11% Similarity=0.146 Sum_probs=31.8
Q ss_pred cCccEEEEcCCHHHHHHH------HHHHHhCCCcEEEEcCCCCC
Q psy4717 28 IGTRYWCITESTEDVEKV------VQVAHDHNLVIIPFGGGTNV 65 (90)
Q Consensus 28 ~~p~~vv~P~s~~~v~~v------v~~a~~~~i~v~~~G~G~n~ 65 (90)
.+|-++.-..+..|++++ .+.|+++++++++=|-||-.
T Consensus 383 LRPG~iaDA~D~AQ~~EL~tLGELtkrA~e~gVQVMIEGPGHVP 426 (642)
T PLN02444 383 LRPGSIYDANDTAQFAELLTQGELTRRAWEKDVQVMNEGPGHVP 426 (642)
T ss_pred cCCCccccCCcHHHHHHHHHHHHHHHHHHHcCCeEEEECCCcCc
Confidence 349999999999888765 57889999999999999943
No 92
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=61.06 E-value=16 Score=25.55 Aligned_cols=28 Identities=7% Similarity=0.265 Sum_probs=23.2
Q ss_pred cCccEEEEcCCHHHHHHHHHHHHhCCCcEEE
Q psy4717 28 IGTRYWCITESTEDVEKVVQVAHDHNLVIIP 58 (90)
Q Consensus 28 ~~p~~vv~P~s~~~v~~vv~~a~~~~i~v~~ 58 (90)
.++++++.|....+| +++|+++++|++|
T Consensus 87 aGA~FivsP~~~~~v---~~~~~~~~i~~iP 114 (213)
T PRK06552 87 AGAQFIVSPSFNRET---AKICNLYQIPYLP 114 (213)
T ss_pred cCCCEEECCCCCHHH---HHHHHHcCCCEEC
Confidence 448999999887765 5669999999999
No 93
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=60.87 E-value=27 Score=24.86 Aligned_cols=40 Identities=18% Similarity=0.286 Sum_probs=29.1
Q ss_pred cCccEEEEcCCHHHHHHHHHHHHhCCCcEEEEcCCCCCCCCc
Q psy4717 28 IGTRYWCITESTEDVEKVVQVAHDHNLVIIPFGGGTNVTGAV 69 (90)
Q Consensus 28 ~~p~~vv~P~s~~~v~~vv~~a~~~~i~v~~~G~G~n~~~~~ 69 (90)
.++++++.+.- +...+-+++++-.+|+...|.|....|+.
T Consensus 168 AGAd~i~~e~~--~~e~~~~i~~~~~~P~~~~gag~~~dgq~ 207 (240)
T cd06556 168 AGADLIVMECV--PVELAKQITEALAIPLAGIGAGSGTDGQF 207 (240)
T ss_pred cCCCEEEEcCC--CHHHHHHHHHhCCCCEEEEecCcCCCceE
Confidence 46888887754 55555566777889999999998765444
No 94
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=60.86 E-value=16 Score=27.83 Aligned_cols=34 Identities=15% Similarity=0.325 Sum_probs=25.9
Q ss_pred ccEEEEcCCH------HHHHHHHHHHHhC--CCcEEEEcCCC
Q psy4717 30 TRYWCITEST------EDVEKVVQVAHDH--NLVIIPFGGGT 63 (90)
Q Consensus 30 p~~vv~P~s~------~~v~~vv~~a~~~--~i~v~~~G~G~ 63 (90)
....++|..+ .+|.+.++.+++. ++=++.+||||
T Consensus 163 ~~~~~~~~~vQG~~A~~~i~~al~~~~~~~~Dviii~RGGGS 204 (438)
T PRK00286 163 VEVIIYPTLVQGEGAAASIVAAIERANARGEDVLIVARGGGS 204 (438)
T ss_pred CeEEEecCcCcCccHHHHHHHHHHHhcCCCCCEEEEecCCCC
Confidence 3555666554 8899999998884 66788999997
No 95
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm
Probab=60.62 E-value=14 Score=27.49 Aligned_cols=29 Identities=21% Similarity=0.279 Sum_probs=23.7
Q ss_pred CCHHHHHHHHHHHHhCCCcEEE-EcCCCCC
Q psy4717 37 ESTEDVEKVVQVAHDHNLVIIP-FGGGTNV 65 (90)
Q Consensus 37 ~s~~~v~~vv~~a~~~~i~v~~-~G~G~n~ 65 (90)
.+.++|.++++.+++++..+++ +|||+-+
T Consensus 65 p~~~~v~~~~~~~~~~~~d~IIaiGGGSvi 94 (370)
T cd08192 65 PTEAAVEAGLAAYRAGGCDGVIAFGGGSAL 94 (370)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEeCCchHH
Confidence 4668899999999999886554 9999865
No 96
>TIGR01357 aroB 3-dehydroquinate synthase. This model represents 3-dehydroquinate synthase, the enzyme catalyzing the second of seven steps in the shikimate pathway of chorismate biosynthesis. Chorismate is the last common intermediate in the biosynthesis of all three aromatic amino acids.
Probab=60.47 E-value=13 Score=27.25 Aligned_cols=29 Identities=31% Similarity=0.477 Sum_probs=24.6
Q ss_pred CCHHHHHHHHHHHHhCCC----cEEEEcCCCCC
Q psy4717 37 ESTEDVEKVVQVAHDHNL----VIIPFGGGTNV 65 (90)
Q Consensus 37 ~s~~~v~~vv~~a~~~~i----~v~~~G~G~n~ 65 (90)
.+.+.+.++++.+++.+. -++.+|||+-+
T Consensus 62 ~~~~~v~~~~~~~~~~~~~r~d~IIavGGGsv~ 94 (344)
T TIGR01357 62 KSLETVQRLYDQLLEAGLDRSSTIIALGGGVVG 94 (344)
T ss_pred CCHHHHHHHHHHHHHcCCCCCCEEEEEcChHHH
Confidence 478999999999999876 58889999865
No 97
>cd02407 PTH2_family Peptidyl-tRNA hydrolase, type 2 (PTH2)_like . Peptidyl-tRNA hydrolase activity releases tRNA from the premature translation termination product peptidyl-tRNA. Two structurally different enzymes have been reported to encode such activity, Pth present in bacteria and eukaryotes and Pth2 present in archaea and eukaryotes.
Probab=60.22 E-value=29 Score=21.99 Aligned_cols=34 Identities=15% Similarity=0.144 Sum_probs=28.8
Q ss_pred ccEEEEcCCHHHHHHHHHHHHhCCCc-EEEEcCCC
Q psy4717 30 TRYWCITESTEDVEKVVQVAHDHNLV-IIPFGGGT 63 (90)
Q Consensus 30 p~~vv~P~s~~~v~~vv~~a~~~~i~-v~~~G~G~ 63 (90)
+..|+...+.+++.++.+.|.+.+++ +.++-.|.
T Consensus 50 ~KvVl~v~~~~~l~~l~~~a~~~gl~~~~v~DAG~ 84 (115)
T cd02407 50 KKVVLKVPSEEELLELAKKAKELGLPHSLIQDAGR 84 (115)
T ss_pred cEEEEECCCHHHHHHHHHHHHHcCCCeEEEEECCC
Confidence 88999999999999999999999998 44555454
No 98
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=60.08 E-value=35 Score=21.45 Aligned_cols=35 Identities=20% Similarity=0.365 Sum_probs=27.4
Q ss_pred cEEEEcCCHHHHHHHHHHHHhCCCcEEEEcCCCCCC
Q psy4717 31 RYWCITESTEDVEKVVQVAHDHNLVIIPFGGGTNVT 66 (90)
Q Consensus 31 ~~vv~P~s~~~v~~vv~~a~~~~i~v~~~G~G~n~~ 66 (90)
...+.|.+.+++.+.++.+.+ +.-+++..||++..
T Consensus 36 ~~~~v~Dd~~~I~~~l~~~~~-~~dliittGG~g~g 70 (135)
T smart00852 36 RYVIVPDDKEAIKEALREALE-RADLVITTGGTGPG 70 (135)
T ss_pred EEEEeCCCHHHHHHHHHHHHh-CCCEEEEcCCCCCC
Confidence 344568999999999987765 36789999999864
No 99
>cd08195 DHQS Dehydroquinate synthase (DHQS) catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway, which involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds, is found in bacteria, microbial eukaryotes, and plants, but not in mammals. Therefore, enzymes of this pathway are attractive targets for the development of non-toxic antimicrobial compounds, herbicides and anti-parasitic agents. The activity of DHQS requires nicotinamide adenine dinucleotide (NAD) as cofactor. A single active site in DHQS catalyzes five sequential reactions involving alcohol oxidation, phosphate elimination, carbonyl reduction, ring opening, and intramolecular aldol
Probab=59.62 E-value=14 Score=27.20 Aligned_cols=29 Identities=34% Similarity=0.525 Sum_probs=24.9
Q ss_pred CCHHHHHHHHHHHHhCCC----cEEEEcCCCCC
Q psy4717 37 ESTEDVEKVVQVAHDHNL----VIIPFGGGTNV 65 (90)
Q Consensus 37 ~s~~~v~~vv~~a~~~~i----~v~~~G~G~n~ 65 (90)
.+.+.+.++++.+.+.++ -++.+|||+-.
T Consensus 66 ~~~~~v~~~~~~~~~~~~~r~d~IIaiGGGsv~ 98 (345)
T cd08195 66 KSLETLEKLYDALLEAGLDRKSLIIALGGGVVG 98 (345)
T ss_pred CCHHHHHHHHHHHHHcCCCCCCeEEEECChHHH
Confidence 478999999999999876 59999999754
No 100
>KOG1185|consensus
Probab=59.23 E-value=24 Score=28.35 Aligned_cols=57 Identities=16% Similarity=0.278 Sum_probs=30.1
Q ss_pred CcchhHHHHHHHHhccCccccceeeecCccEEEEcCCHHHHHHHHHHHHhCCCcEEEEcCCCCCC
Q psy4717 2 KSTEDVEKVVQVAHDHNLVVNHQAIFIGTRYWCITESTEDVEKVVQVAHDHNLVIIPFGGGTNVT 66 (90)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~vv~P~s~~~v~~vv~~a~~~~i~v~~~G~G~n~~ 66 (90)
...+.++|.+++...+.. ...-++-.+...| .+++++++|+ ..|+||.|-+.|-++.
T Consensus 202 p~~s~i~~av~llk~AKr----PLlvvGkgAa~~~-ae~~l~~~Ve---~~glPflptpMgKGll 258 (571)
T KOG1185|consen 202 PPPSQIQKAVQLLKSAKR----PLLVVGKGAAYAP-AEDQLRKFVE---TTGLPFLPTPMGKGLL 258 (571)
T ss_pred CCHHHHHHHHHHHHhcCC----cEEEEecccccCc-cHHHHHHHHH---hcCCCcccCcccccCC
Confidence 345566666664444321 2233333333333 6666665554 5677777766666664
No 101
>TIGR00283 arch_pth2 peptidyl-tRNA hydrolase. This model describes an archaeal/eukaryotic form of peptidyl-tRNA hydrolase. Most bacterial forms are described by TIGR00447.
Probab=59.02 E-value=31 Score=21.93 Aligned_cols=34 Identities=18% Similarity=0.108 Sum_probs=28.7
Q ss_pred ccEEEEcCCHHHHHHHHHHHHhCCCcEEE-EcCCC
Q psy4717 30 TRYWCITESTEDVEKVVQVAHDHNLVIIP-FGGGT 63 (90)
Q Consensus 30 p~~vv~P~s~~~v~~vv~~a~~~~i~v~~-~G~G~ 63 (90)
+..++...+++++.++.+.|.+.+++... +-.|.
T Consensus 50 ~KVvlk~~~~~el~~l~~~a~~~~l~~~~v~DAG~ 84 (115)
T TIGR00283 50 KKVVLKVNSLEELLEIYHKAESLGLVTGLIRDAGH 84 (115)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 77999999999999999999999998654 44454
No 102
>PRK07106 5-aminoimidazole-4-carboxamide ribonucleotide transformylase; Provisional
Probab=58.89 E-value=13 Score=28.59 Aligned_cols=35 Identities=11% Similarity=0.200 Sum_probs=26.8
Q ss_pred CccEEEEcCCHHHHHHHHHHHHhCCCcEEEEcCCC
Q psy4717 29 GTRYWCITESTEDVEKVVQVAHDHNLVIIPFGGGT 63 (90)
Q Consensus 29 ~p~~vv~P~s~~~v~~vv~~a~~~~i~v~~~G~G~ 63 (90)
+..+|++|..---=.++++.|+++|+.++.-|--|
T Consensus 353 GV~aIiQPGGSiRD~evI~aane~giaMvfTg~Rh 387 (390)
T PRK07106 353 GVKYIAQPGGSIRDDNVIETCNKYGMTMAFTGVRL 387 (390)
T ss_pred CCEEEECCCCCCCcHHHHHHHHHhCCEEEECCCCC
Confidence 47888888766555778899999999888866544
No 103
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=58.86 E-value=25 Score=21.79 Aligned_cols=30 Identities=10% Similarity=0.219 Sum_probs=24.7
Q ss_pred EcCCHHHHHHHHHHHHhCCCcEEEEcCCCC
Q psy4717 35 ITESTEDVEKVVQVAHDHNLVIIPFGGGTN 64 (90)
Q Consensus 35 ~P~s~~~v~~vv~~a~~~~i~v~~~G~G~n 64 (90)
.....+++.++++.|++.|.+++.+.+..+
T Consensus 56 ~SG~t~~~~~~~~~a~~~g~~vi~iT~~~~ 85 (120)
T cd05710 56 HSGNTKETVAAAKFAKEKGATVIGLTDDED 85 (120)
T ss_pred CCCCChHHHHHHHHHHHcCCeEEEEECCCC
Confidence 345779999999999999999988876443
No 104
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=58.74 E-value=14 Score=27.60 Aligned_cols=29 Identities=21% Similarity=0.281 Sum_probs=24.2
Q ss_pred CHHHHHHHHHHHHhCCCcE-EEEcCCCCCC
Q psy4717 38 STEDVEKVVQVAHDHNLVI-IPFGGGTNVT 66 (90)
Q Consensus 38 s~~~v~~vv~~a~~~~i~v-~~~G~G~n~~ 66 (90)
+.+.|.++++.++++++-+ +.+|||+-+-
T Consensus 71 ~~~~v~~~~~~~~~~~~D~IiaiGGGSviD 100 (379)
T TIGR02638 71 TITVVKAGVAAFKASGADYLIAIGGGSPID 100 (379)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCChHHHH
Confidence 5799999999999999865 4599999763
No 105
>PRK14454 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=58.69 E-value=37 Score=25.36 Aligned_cols=62 Identities=13% Similarity=0.131 Sum_probs=40.0
Q ss_pred cchhHHHHHHHHhccCccccceeeecC--ccEEEEcCCHHHHHHHHHHHHhCCCcEEEEcC-CCCCC
Q psy4717 3 STEDVEKVVQVAHDHNLVVNHQAIFIG--TRYWCITESTEDVEKVVQVAHDHNLVIIPFGG-GTNVT 66 (90)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--p~~vv~P~s~~~v~~vv~~a~~~~i~v~~~G~-G~n~~ 66 (90)
|.++.+++++...+.... -+..... +..=+.|.+.+++.++.++..++|+++.++.. |..+.
T Consensus 265 s~eda~~La~llk~l~~~--VnLiPyn~~~~~~~~~ps~e~l~~f~~~l~~~gi~v~iR~~~G~di~ 329 (342)
T PRK14454 265 SKEDAKELGKLLKGMLCH--VNLIPVNEVKENGFKKSSKEKIKKFKNILKKNGIETTIRREMGSDIN 329 (342)
T ss_pred CHHHHHHHHHHHhcCCce--EEEEecCCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEeCCCCCchh
Confidence 567788888866554211 1222222 22234677889999999999999999998843 55554
No 106
>smart00861 Transket_pyr Transketolase, pyrimidine binding domain. Transketolase (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Hansenula polymorpha, there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates.
Probab=58.23 E-value=25 Score=22.86 Aligned_cols=22 Identities=5% Similarity=0.030 Sum_probs=19.6
Q ss_pred cEEEEcCCHHHHHHHHHHHHhC
Q psy4717 31 RYWCITESTEDVEKVVQVAHDH 52 (90)
Q Consensus 31 ~~vv~P~s~~~v~~vv~~a~~~ 52 (90)
-.|+.|.+.+|+..+++++-++
T Consensus 134 ~~v~~P~~~~e~~~~l~~a~~~ 155 (168)
T smart00861 134 LKVVAPSDPAEAKGLLRAAIRR 155 (168)
T ss_pred cEEEecCCHHHHHHHHHHHHhC
Confidence 4489999999999999999965
No 107
>PRK14455 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=58.08 E-value=37 Score=25.48 Aligned_cols=62 Identities=11% Similarity=0.100 Sum_probs=39.6
Q ss_pred cchhHHHHHHHHhccCccccceeeecC--ccEEEEcCCHHHHHHHHHHHHhCCCcEEEEcC-CCCCC
Q psy4717 3 STEDVEKVVQVAHDHNLVVNHQAIFIG--TRYWCITESTEDVEKVVQVAHDHNLVIIPFGG-GTNVT 66 (90)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--p~~vv~P~s~~~v~~vv~~a~~~~i~v~~~G~-G~n~~ 66 (90)
|-++++++++........ -+..... +..=+.+.+.+++.+..+++.++|+++.++.. |..+.
T Consensus 276 s~ed~~~La~ll~~l~~~--VnLIPynp~~~~ky~~ps~e~l~~f~~~L~~~gi~v~ir~~~g~di~ 340 (356)
T PRK14455 276 QVEHAEELADLLKGIKCH--VNLIPVNPVPERDYVRTPKEDIFAFEDTLKKNGVNCTIRREHGTDID 340 (356)
T ss_pred CHHHHHHHHHHHhcCCCc--EEEEecCcCCCCCCcCCCHHHHHHHHHHHHHCCCcEEEeCCCCcchh
Confidence 446788888866555321 1222222 22223456888999999999999999888754 55554
No 108
>PRK14467 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=57.95 E-value=29 Score=26.12 Aligned_cols=66 Identities=17% Similarity=0.120 Sum_probs=44.3
Q ss_pred cchhHHHHHHHHhccCcccccee--eecCccEEEEcCCHHHHHHHHHHHHhCCCcEEEEc-CCCCCCCC
Q psy4717 3 STEDVEKVVQVAHDHNLVVNHQA--IFIGTRYWCITESTEDVEKVVQVAHDHNLVIIPFG-GGTNVTGA 68 (90)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~p~~vv~P~s~~~v~~vv~~a~~~~i~v~~~G-~G~n~~~~ 68 (90)
|-++.+++++...+......-+. |+..|..=+.|.+.+++.++.++..++|+++.++- .|..+.++
T Consensus 266 s~e~a~~La~~l~~l~~~~~VnLIPynp~~~~~~~~ps~e~i~~f~~~L~~~gi~v~vR~~~G~di~aa 334 (348)
T PRK14467 266 SPEDALRLAQLIGKNKKKFKVNLIPFNPDPELPYERPELERVYKFQKILWDNGISTFVRWSKGVDIFGA 334 (348)
T ss_pred CHHHHHHHHHHHhcCCCceEEEEecCCCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEeCCCCcchhhc
Confidence 45678888887766431111122 23334445678899999999999999999999983 46666543
No 109
>cd08196 DHQS-like1 Dehydroquinate synthase (DHQS)-like. DHQS catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase-like proteins. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. The activity of DHQS requires NAD as cofactor. Proteins of this family share sequence similarity and functional motifs with that of dehydroquinate synthase, but the specific function has not been characterized.
Probab=57.92 E-value=16 Score=27.34 Aligned_cols=29 Identities=24% Similarity=0.428 Sum_probs=25.1
Q ss_pred CCHHHHHHHHHHHHhCCC----cEEEEcCCCCC
Q psy4717 37 ESTEDVEKVVQVAHDHNL----VIIPFGGGTNV 65 (90)
Q Consensus 37 ~s~~~v~~vv~~a~~~~i----~v~~~G~G~n~ 65 (90)
.+.+.+.++++.+.+.+. .++.+|||+-.
T Consensus 57 k~l~~v~~~~~~~~~~~~~r~d~iIaiGGGsv~ 89 (346)
T cd08196 57 KSLEAVSSVIESLRQNGARRNTHLVAIGGGIIQ 89 (346)
T ss_pred CCHHHHHHHHHHHHHcCCCCCcEEEEECChHHH
Confidence 378999999999999888 79999999854
No 110
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=57.83 E-value=22 Score=23.08 Aligned_cols=30 Identities=20% Similarity=0.402 Sum_probs=25.0
Q ss_pred EEcCCHHHHHHHHHHHHhCCCcEEEEcCCC
Q psy4717 34 CITESTEDVEKVVQVAHDHNLVIIPFGGGT 63 (90)
Q Consensus 34 v~P~s~~~v~~vv~~a~~~~i~v~~~G~G~ 63 (90)
-.....+++.++++.|++.|++++.+.+..
T Consensus 87 S~sG~t~~~~~~~~~a~~~g~~ii~iT~~~ 116 (154)
T TIGR00441 87 STSGNSKNVLKAIEAAKDKGMKTITLAGKD 116 (154)
T ss_pred cCCCCCHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 344567999999999999999999997743
No 111
>cd08178 AAD_C C-terminal alcohol dehydrogenase domain of the acetaldehyde dehydrogenase-alcohol dehydrogenase bifunctional two-domain protein (AAD). Alcohol dehydrogenase domain located on the C-terminal of a bifunctional two-domain protein. The N-terminal of the protein contains an acetaldehyde-CoA dehydrogenase domain. This protein is involved in pyruvate metabolism. Pyruvate is converted to acetyl-CoA and formate by pyruvate formate-lysase (PFL). Under anaerobic condition, acetyl-CoA is reduced to acetaldehyde and ethanol by this two-domain protein. Acetyl-CoA is first converted into an enzyme-bound thiohemiacetal by the N-terminal acetaldehyde dehydrogenase domain. The enzyme-bound thiohemiacetal is subsequently reduced by the C-terminal NAD+-dependent alcohol dehydrogenase domain. In E. coli, this protein is called AdhE and was shown pyruvate formate-lysase (PFL) deactivase activity, which is involved in the inactivation of PFL, a key enzyme in anaerobic metabolism. In Escherichi
Probab=57.72 E-value=17 Score=27.42 Aligned_cols=29 Identities=28% Similarity=0.429 Sum_probs=24.0
Q ss_pred CCHHHHHHHHHHHHhCCCcEE-EEcCCCCC
Q psy4717 37 ESTEDVEKVVQVAHDHNLVII-PFGGGTNV 65 (90)
Q Consensus 37 ~s~~~v~~vv~~a~~~~i~v~-~~G~G~n~ 65 (90)
.+.+.|.++++.+++++.-++ .+|||+.+
T Consensus 62 p~~~~v~~~~~~~~~~~~D~IIaiGGGS~i 91 (398)
T cd08178 62 PSLETVRKGLELMNSFKPDTIIALGGGSPM 91 (398)
T ss_pred cCHHHHHHHHHHHHhcCCCEEEEeCCccHH
Confidence 466889999999999998654 59999965
No 112
>PRK11194 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=57.65 E-value=37 Score=25.82 Aligned_cols=64 Identities=14% Similarity=0.157 Sum_probs=40.5
Q ss_pred cchhHHHHHHHHhccCccccceeeecC--ccEEEEcCCHHHHHHHHHHHHhCCCcEEEE-cCCCCCCCC
Q psy4717 3 STEDVEKVVQVAHDHNLVVNHQAIFIG--TRYWCITESTEDVEKVVQVAHDHNLVIIPF-GGGTNVTGA 68 (90)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--p~~vv~P~s~~~v~~vv~~a~~~~i~v~~~-G~G~n~~~~ 68 (90)
|-++.+++++...+.+. .-+..... +..=+.+.+.+++.++.++.+++|+++.++ .+|..+.++
T Consensus 276 s~e~a~~La~ll~~l~~--~VnLIPYN~~~~~~~~~ps~e~v~~f~~~L~~~Gi~vtiR~~~G~di~aa 342 (372)
T PRK11194 276 GTEHAHQLAELLKDTPC--KINLIPWNPFPGAPYGRSSNSRIDRFSKVLMEYGFTVIVRKTRGDDIDAA 342 (372)
T ss_pred CHHHHHHHHHHHhcCCc--eEEEecCCCCCCCCCCCCCHHHHHHHHHHHHHCCCeEEEecCCCCcchhc
Confidence 55777888886655432 11222211 222236778899999999999999999885 446666433
No 113
>cd08197 DOIS 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes neomycin, kanamycin, gentamicin, and ribostamycin. They are important antibacterial agents. DOIS is a homologue of the dehydroquinate synthase which catalyzes the cyclization of 3-deoxy-D-arabino-heputulosonate-7-phosphate to dehydroquinate (DHQ) in the shikimate pathway.
Probab=57.60 E-value=16 Score=27.28 Aligned_cols=29 Identities=21% Similarity=0.349 Sum_probs=25.0
Q ss_pred CCHHHHHHHHHHHHhCCCc----EEEEcCCCCC
Q psy4717 37 ESTEDVEKVVQVAHDHNLV----IIPFGGGTNV 65 (90)
Q Consensus 37 ~s~~~v~~vv~~a~~~~i~----v~~~G~G~n~ 65 (90)
.+.+.+.++++.+.+.++. ++.+|||+-.
T Consensus 65 k~~~~v~~~~~~~~~~~~dr~~~IIAvGGGsv~ 97 (355)
T cd08197 65 KTLSTLSDLVERALALGATRRSVIVALGGGVVG 97 (355)
T ss_pred CCHHHHHHHHHHHHHcCCCCCcEEEEECCcHHH
Confidence 4789999999999999984 8889999854
No 114
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=57.16 E-value=16 Score=27.42 Aligned_cols=29 Identities=24% Similarity=0.302 Sum_probs=24.0
Q ss_pred CHHHHHHHHHHHHhCCCcEEE-EcCCCCCC
Q psy4717 38 STEDVEKVVQVAHDHNLVIIP-FGGGTNVT 66 (90)
Q Consensus 38 s~~~v~~vv~~a~~~~i~v~~-~G~G~n~~ 66 (90)
+.+.|.++++.+++.++.+++ +|||+-+-
T Consensus 72 ~~~~v~~~~~~~~~~~~D~IIaiGGGS~iD 101 (382)
T PRK10624 72 TIEVVKEGVEVFKASGADYLIAIGGGSPQD 101 (382)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCChHHHH
Confidence 479999999999999987555 99999663
No 115
>COG0521 MoaB Molybdopterin biosynthesis enzymes [Coenzyme metabolism]
Probab=57.15 E-value=38 Score=23.12 Aligned_cols=37 Identities=19% Similarity=0.383 Sum_probs=30.1
Q ss_pred ccEEEEcCCHHHHHHHHHHHHhCCCcEEEEcCCCCCC
Q psy4717 30 TRYWCITESTEDVEKVVQVAHDHNLVIIPFGGGTNVT 66 (90)
Q Consensus 30 p~~vv~P~s~~~v~~vv~~a~~~~i~v~~~G~G~n~~ 66 (90)
..+.+.|...+++++.+.......+.++...|||+++
T Consensus 44 ~~~~iV~D~~~~I~~~l~~~~~~~~DvvlttGGTG~t 80 (169)
T COG0521 44 AAYTIVPDDKEQIRATLIALIDEDVDVVLTTGGTGIT 80 (169)
T ss_pred ceEEEeCCCHHHHHHHHHHHhcCCCCEEEEcCCccCC
Confidence 5778999999999777666544449999999999986
No 116
>TIGR01093 aroD 3-dehydroquinate dehydratase, type I. Type II 3-dehydroquinate dehydratase, designated AroQ, is described by TIGR01088.
Probab=57.06 E-value=21 Score=24.84 Aligned_cols=35 Identities=17% Similarity=0.353 Sum_probs=29.1
Q ss_pred ccEEEEcCCHHHHHHHHHHHHhC----CCcEEEEcCCCC
Q psy4717 30 TRYWCITESTEDVEKVVQVAHDH----NLVIIPFGGGTN 64 (90)
Q Consensus 30 p~~vv~P~s~~~v~~vv~~a~~~----~i~v~~~G~G~n 64 (90)
.+.++.|++.+|+.+++++..+. +.|++.++-|..
T Consensus 152 vKia~~a~~~~D~~~ll~~~~~~~~~~~~p~i~~~MG~~ 190 (228)
T TIGR01093 152 VKIAVMANSKEDVLTLLEITNKVDEHADVPLITMSMGDR 190 (228)
T ss_pred EEEEeccCCHHHHHHHHHHHHHHHhcCCCCEEEEeCCCC
Confidence 56788999999999999988653 479999998873
No 117
>KOG1342|consensus
Probab=56.96 E-value=15 Score=28.52 Aligned_cols=27 Identities=26% Similarity=0.444 Sum_probs=24.0
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEEcCCC
Q psy4717 37 ESTEDVEKVVQVAHDHNLVIIPFGGGT 63 (90)
Q Consensus 37 ~s~~~v~~vv~~a~~~~i~v~~~G~G~ 63 (90)
=|+.-..++|++.+..++|+++.|||-
T Consensus 275 Lsi~Gh~~Cv~fvksfn~pllvlGGGG 301 (425)
T KOG1342|consen 275 LSIKGHAECVKFVKSFNLPLLVLGGGG 301 (425)
T ss_pred ecchhHHHHHHHHHHcCCcEEEecCCc
Confidence 467888999999999999999999874
No 118
>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH). Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alc
Probab=56.77 E-value=18 Score=26.30 Aligned_cols=29 Identities=28% Similarity=0.540 Sum_probs=22.6
Q ss_pred CCHHHHHHHHHHHHhCCCc-EEEEcCCCCC
Q psy4717 37 ESTEDVEKVVQVAHDHNLV-IIPFGGGTNV 65 (90)
Q Consensus 37 ~s~~~v~~vv~~a~~~~i~-v~~~G~G~n~ 65 (90)
.+.++|.++++.+++.+.. ++.+|||+-+
T Consensus 62 p~~~~v~~~~~~~~~~~~d~IIaiGGGs~~ 91 (332)
T cd07766 62 PTFEEVKEAVERARAAEVDAVIAVGGGSTL 91 (332)
T ss_pred cCHHHHHHHHHHHHhcCcCEEEEeCCchHH
Confidence 5888899999999887665 4558888854
No 119
>cd08180 PDD 1,3-propanediol dehydrogenase (PPD) catalyzes the reduction of 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol in glycerol metabolism. 1,3-propanediol dehydrogenase (PPD) plays a role in glycerol metabolism of some bacteria in anaerobic conditions. In this degradation pathway, glycerol is converted in a two-step process to 1,3-propanediol (1,3-PD) which is then excreted into the extracellular medium. The first reaction involves the transformation of glycerol into 3-hydroxypropionaldehyde (3-HPA) by a coenzyme B-12-dependent dehydratase. The second reaction involves the dismutation of the 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol by the NADH-linked 1,3-propanediol dehydrogenase (PPD). The enzyme require iron ion for its function. Because many genes in this pathway are present in the pdu (propanediol utilisation) operon, they are also named pdu genes. PPD is a member of the iron-containing alcohol dehydrogenase superfamily. The PPD structure has a dehydroquinat
Probab=56.65 E-value=17 Score=26.55 Aligned_cols=28 Identities=29% Similarity=0.398 Sum_probs=22.3
Q ss_pred CHHHHHHHHHHHHhCCCcEEE-EcCCCCC
Q psy4717 38 STEDVEKVVQVAHDHNLVIIP-FGGGTNV 65 (90)
Q Consensus 38 s~~~v~~vv~~a~~~~i~v~~-~G~G~n~ 65 (90)
+.+.|.++++.+++.+..+++ +|||+-+
T Consensus 63 ~~~~v~~~~~~~~~~~~d~IiaiGGGs~~ 91 (332)
T cd08180 63 PIEVVAKGIKKFLDFKPDIVIALGGGSAI 91 (332)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEECCchHH
Confidence 578888999999888876444 8888865
No 120
>cd03522 MoeA_like MoeA_like. This domain is similar to a domain found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. There this domain is presumed to bind molybdopterin. The exact function of this subgroup is unknown.
Probab=56.59 E-value=28 Score=25.84 Aligned_cols=36 Identities=11% Similarity=0.226 Sum_probs=30.8
Q ss_pred cEEEEcCCHHHHHHHHHHHHhCCCcEEEEcCCCCCC
Q psy4717 31 RYWCITESTEDVEKVVQVAHDHNLVIIPFGGGTNVT 66 (90)
Q Consensus 31 ~~vv~P~s~~~v~~vv~~a~~~~i~v~~~G~G~n~~ 66 (90)
...+.|.+.+++.+.++-+.+.+.-+++.+||++..
T Consensus 197 ~~~iv~Dd~~~I~~ai~~~~~~g~DlIItTGGtsvg 232 (312)
T cd03522 197 EQVIVPHDEAAIAAAIAEALEAGAELLILTGGASVD 232 (312)
T ss_pred EEEEcCCCHHHHHHHHHHHhcCCCCEEEEeCCcccC
Confidence 445779999999999988877778999999999884
No 121
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=56.50 E-value=16 Score=27.07 Aligned_cols=28 Identities=18% Similarity=0.434 Sum_probs=23.1
Q ss_pred CHHHHHHHHHHHHhCCCc-EEEEcCCCCC
Q psy4717 38 STEDVEKVVQVAHDHNLV-IIPFGGGTNV 65 (90)
Q Consensus 38 s~~~v~~vv~~a~~~~i~-v~~~G~G~n~ 65 (90)
+.+.|.++++.+++++.- ++.+|||+.+
T Consensus 62 ~~~~v~~~~~~~~~~~~D~IIavGGGs~~ 90 (367)
T cd08182 62 DLEDLAAGIRLLREFGPDAVLAVGGGSVL 90 (367)
T ss_pred CHHHHHHHHHHHHhcCcCEEEEeCCcHHH
Confidence 568899999999998875 5559999865
No 122
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=56.39 E-value=21 Score=24.84 Aligned_cols=28 Identities=21% Similarity=0.574 Sum_probs=22.6
Q ss_pred cCccEEEEcCCHHHHHHHHHHHHhCCCcEEE
Q psy4717 28 IGTRYWCITESTEDVEKVVQVAHDHNLVIIP 58 (90)
Q Consensus 28 ~~p~~vv~P~s~~~v~~vv~~a~~~~i~v~~ 58 (90)
.++++++.|.-.++ ++++|++++++++|
T Consensus 75 aGA~FivSP~~~~~---vi~~a~~~~i~~iP 102 (201)
T PRK06015 75 AGSRFIVSPGTTQE---LLAAANDSDVPLLP 102 (201)
T ss_pred cCCCEEECCCCCHH---HHHHHHHcCCCEeC
Confidence 34899999987665 56779999999988
No 123
>PF05822 UMPH-1: Pyrimidine 5'-nucleotidase (UMPH-1); InterPro: IPR006434 This family is a small group of metazoan sequences with sequences from Arabidopsis thaliana (Mouse-ear cress) and rice. The sequences represent pyrimidine 5-nucleotidases, apparently in reference to HSPC233, the Homo sapiens (Human) homologue []. The structure of mouse sequence has been reported []. This group of sequences was originally found during searches for members of the haloacid dehalogenase (HAD) superfamily (IPR005834 from INTERPRO). All of the conserved catalytic motifs [] are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches of that subfamily (IA-ID) as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.; GO: 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0005737 cytoplasm; PDB: 2BDU_B 2G07_A 2G06_A 2G0A_A 2Q4T_A 2G09_A 2G08_A 2VKQ_A 2CN1_A 2JGA_A.
Probab=56.31 E-value=8.4 Score=27.80 Aligned_cols=23 Identities=26% Similarity=0.531 Sum_probs=17.8
Q ss_pred HHHHHHHHHHhCCCcEEEEcCCC
Q psy4717 41 DVEKVVQVAHDHNLVIIPFGGGT 63 (90)
Q Consensus 41 ~v~~vv~~a~~~~i~v~~~G~G~ 63 (90)
-+.++++.+.++++|+.++++|=
T Consensus 94 g~~~~f~~L~~~~IP~lIFSAGl 116 (246)
T PF05822_consen 94 GVEEFFDKLEEHNIPLLIFSAGL 116 (246)
T ss_dssp THHHHHHHHHCTT--EEEEEEEE
T ss_pred CHHHHHHHHHhcCCCEEEEeCCc
Confidence 45678899999999999999884
No 124
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=56.17 E-value=33 Score=21.69 Aligned_cols=33 Identities=15% Similarity=0.247 Sum_probs=27.1
Q ss_pred EEEcCCHHHHHHHHHHHHhCCCcEEEEcCCCCCC
Q psy4717 33 WCITESTEDVEKVVQVAHDHNLVIIPFGGGTNVT 66 (90)
Q Consensus 33 vv~P~s~~~v~~vv~~a~~~~i~v~~~G~G~n~~ 66 (90)
.+.|.+.+++++.++-+.+. ..++...||++..
T Consensus 39 ~~v~Dd~~~i~~~i~~~~~~-~DlvittGG~g~g 71 (133)
T cd00758 39 GVVPDDADSIRAALIEASRE-ADLVLTTGGTGVG 71 (133)
T ss_pred eecCCCHHHHHHHHHHHHhc-CCEEEECCCCCCC
Confidence 35689999999999877654 7799999999874
No 125
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=55.99 E-value=23 Score=21.77 Aligned_cols=31 Identities=19% Similarity=0.327 Sum_probs=25.4
Q ss_pred EcCCHHHHHHHHHHHHhCCCcEEEEcCCCCC
Q psy4717 35 ITESTEDVEKVVQVAHDHNLVIIPFGGGTNV 65 (90)
Q Consensus 35 ~P~s~~~v~~vv~~a~~~~i~v~~~G~G~n~ 65 (90)
......|+.++++.|++.|++++.+.+.+.+
T Consensus 52 ~SG~t~e~i~~~~~a~~~g~~iI~IT~~~~l 82 (119)
T cd05017 52 YSGNTEETLSAVEQAKERGAKIVAITSGGKL 82 (119)
T ss_pred CCCCCHHHHHHHHHHHHCCCEEEEEeCCchH
Confidence 3446789999999999999999998865544
No 126
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily. Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con
Probab=55.98 E-value=32 Score=22.35 Aligned_cols=36 Identities=14% Similarity=0.148 Sum_probs=28.8
Q ss_pred CccEEEEcCCHHHHHHHHHHHHhCCCcEEEEcCCCC
Q psy4717 29 GTRYWCITESTEDVEKVVQVAHDHNLVIIPFGGGTN 64 (90)
Q Consensus 29 ~p~~vv~P~s~~~v~~vv~~a~~~~i~v~~~G~G~n 64 (90)
++++++.+.+......+++.+.+.++|++..+....
T Consensus 58 ~~d~ii~~~~~~~~~~~~~~~~~~~ip~v~~~~~~~ 93 (269)
T cd01391 58 GVDGIIGPPSSSSALAVVELAAAAGIPVVSLDATAP 93 (269)
T ss_pred CCCEEEecCCCHHHHHHHHHHHHcCCcEEEecCCCC
Confidence 478888887766666689999999999999877654
No 127
>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=55.85 E-value=35 Score=25.62 Aligned_cols=65 Identities=11% Similarity=0.062 Sum_probs=40.8
Q ss_pred cchhHHHHHHHHhccCccccceeeecCccEEEEcCCHHHHHHHHHHHHhCCCcEEEEcC-CCCCCC
Q psy4717 3 STEDVEKVVQVAHDHNLVVNHQAIFIGTRYWCITESTEDVEKVVQVAHDHNLVIIPFGG-GTNVTG 67 (90)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~vv~P~s~~~v~~vv~~a~~~~i~v~~~G~-G~n~~~ 67 (90)
|-++.+++++...+.+...|-=-|+.-+..=+.|.+.+++.++.++.+++|+++.++-. |..+.+
T Consensus 269 s~e~a~~La~~l~~l~~~VnLIPynp~~~~~~~~ps~e~i~~f~~~L~~~Gi~vtvR~~~G~di~a 334 (345)
T PRK14457 269 LPEHAEELANLLRGFQSHVNLIPYNPIDEVEFQRPSPKRIQAFQRVLEQRGVAVSVRASRGLDANA 334 (345)
T ss_pred CHHHHHHHHHHHhcCCCeEEEecCCCCCCCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCCchhh
Confidence 45677888886665432111111222223335678889999999999999999887643 666543
No 128
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=55.84 E-value=42 Score=22.42 Aligned_cols=35 Identities=14% Similarity=0.263 Sum_probs=28.9
Q ss_pred cEEEEcCCHHHHHHHHHHHHhCCCcEEEEcCCCCCC
Q psy4717 31 RYWCITESTEDVEKVVQVAHDHNLVIIPFGGGTNVT 66 (90)
Q Consensus 31 ~~vv~P~s~~~v~~vv~~a~~~~i~v~~~G~G~n~~ 66 (90)
...+.|.+.+++.+.++.+.+ +.-+++..||++..
T Consensus 37 ~~~~v~Dd~~~I~~~l~~~~~-~~dlVIttGG~G~t 71 (170)
T cd00885 37 RVTVVGDDEDRIAEALRRASE-RADLVITTGGLGPT 71 (170)
T ss_pred EEEEeCCCHHHHHHHHHHHHh-CCCEEEECCCCCCC
Confidence 355779999999999988775 57899999998874
No 129
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=55.84 E-value=24 Score=27.18 Aligned_cols=36 Identities=14% Similarity=0.275 Sum_probs=24.1
Q ss_pred ccEEEEcCCHHHHHHHHHHHHhC---CCcEEEEcCCCCC
Q psy4717 30 TRYWCITESTEDVEKVVQVAHDH---NLVIIPFGGGTNV 65 (90)
Q Consensus 30 p~~vv~P~s~~~v~~vv~~a~~~---~i~v~~~G~G~n~ 65 (90)
|..|-=...+.+|.+.++.++.. ++=++.+||||--
T Consensus 163 ~~~vQG~~a~~~i~~al~~~~~~~~~dviii~RGGGs~e 201 (432)
T TIGR00237 163 PTLVQGEGAVQSIVESIELANTKNECDVLIVGRGGGSLE 201 (432)
T ss_pred cccccCccHHHHHHHHHHHhhcCCCCCEEEEecCCCCHH
Confidence 33333334458899999888863 4568888888843
No 130
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=55.41 E-value=18 Score=26.78 Aligned_cols=29 Identities=21% Similarity=0.428 Sum_probs=23.7
Q ss_pred CCHHHHHHHHHHHHhCCCc-EEEEcCCCCC
Q psy4717 37 ESTEDVEKVVQVAHDHNLV-IIPFGGGTNV 65 (90)
Q Consensus 37 ~s~~~v~~vv~~a~~~~i~-v~~~G~G~n~ 65 (90)
.+.++|.++++.+++.+.. ++.+|||+-+
T Consensus 64 p~~~~v~~~~~~~~~~~~d~IiaiGGGs~~ 93 (370)
T cd08551 64 PTLSNVDAAVAAYREEGCDGVIAVGGGSVL 93 (370)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEeCCchHH
Confidence 3789999999999998875 5559999854
No 131
>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.
Probab=55.32 E-value=16 Score=26.73 Aligned_cols=25 Identities=16% Similarity=0.403 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHhCCCcEEEEcCCCC
Q psy4717 40 EDVEKVVQVAHDHNLVIIPFGGGTN 64 (90)
Q Consensus 40 ~~v~~vv~~a~~~~i~v~~~G~G~n 64 (90)
.-+.++++.|+++|+|+.+.++|-.
T Consensus 124 pG~~efl~~L~~~GIpv~IvS~G~~ 148 (277)
T TIGR01544 124 DGYENFFDKLQQHSIPVFIFSAGIG 148 (277)
T ss_pred cCHHHHHHHHHHCCCcEEEEeCCcH
Confidence 3456778899999999999999984
No 132
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=55.10 E-value=16 Score=23.33 Aligned_cols=28 Identities=21% Similarity=0.283 Sum_probs=21.0
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEEcCCCC
Q psy4717 37 ESTEDVEKVVQVAHDHNLVIIPFGGGTN 64 (90)
Q Consensus 37 ~s~~~v~~vv~~a~~~~i~v~~~G~G~n 64 (90)
...+++.+++.-+.+.|-.++.+|.||+
T Consensus 19 ~~i~~aa~~i~~~~~~gg~i~~~G~G~S 46 (138)
T PF13580_consen 19 EAIEKAADLIAEALRNGGRIFVCGNGHS 46 (138)
T ss_dssp HHHHHHHHHHHHHHHTT--EEEEESTHH
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEcCchh
Confidence 3456777777778889999999999997
No 133
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=55.10 E-value=21 Score=28.14 Aligned_cols=34 Identities=15% Similarity=0.161 Sum_probs=29.5
Q ss_pred ccEEEEcCCHHHHHHHHHHHHhCCCcEEEEcCCC
Q psy4717 30 TRYWCITESTEDVEKVVQVAHDHNLVIIPFGGGT 63 (90)
Q Consensus 30 p~~vv~P~s~~~v~~vv~~a~~~~i~v~~~G~G~ 63 (90)
+..++.|++.+|+..+++...+.+.|++.++-|-
T Consensus 169 ~Kia~~~~~~~D~~~ll~~~~~~~~p~i~~~MG~ 202 (529)
T PLN02520 169 VKIATTALDITDVARMFQITVHSQVPTIGLVMGE 202 (529)
T ss_pred EEEecCCCCHHHHHHHHHHHhhcCCCEEEEecCC
Confidence 6778899999999999998888889999877665
No 134
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=54.91 E-value=20 Score=26.38 Aligned_cols=28 Identities=39% Similarity=0.526 Sum_probs=22.8
Q ss_pred CHHHHHHHHHHHHhCCCc-EEEEcCCCCC
Q psy4717 38 STEDVEKVVQVAHDHNLV-IIPFGGGTNV 65 (90)
Q Consensus 38 s~~~v~~vv~~a~~~~i~-v~~~G~G~n~ 65 (90)
+.+.|.++++.+++.+.. ++.+|||+-+
T Consensus 62 ~~~~v~~~~~~~~~~~~d~IIavGGGs~~ 90 (349)
T cd08550 62 STEEVVKALCGAEEQEADVIIGVGGGKTL 90 (349)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEecCcHHH
Confidence 678899999999988875 4559999855
No 135
>cd00502 DHQase_I Type I 3-dehydroquinase, (3-dehydroquinate dehydratase or DHQase.) Catalyzes the cis-dehydration of 3-dehydroquinate via a covalent imine intermediate to produce dehydroshikimate. Dehydroquinase is the third enzyme in the shikimate pathway, which is involved in the biosynthesis of aromatic amino acids. Type I DHQase exists as a homodimer. Type II 3-dehydroquinase also catalyzes the same overall reaction, but is unrelated in terms of sequence and structure, and utilizes a completely different reaction mechanism.
Probab=54.89 E-value=21 Score=24.64 Aligned_cols=35 Identities=14% Similarity=0.259 Sum_probs=29.2
Q ss_pred ccEEEEcCCHHHHHHHHHHHHhC----CCcEEEEcCCCC
Q psy4717 30 TRYWCITESTEDVEKVVQVAHDH----NLVIIPFGGGTN 64 (90)
Q Consensus 30 p~~vv~P~s~~~v~~vv~~a~~~----~i~v~~~G~G~n 64 (90)
.+.++.|++.+|+.+++++..+. +.|++.++-|..
T Consensus 147 vKla~~~~~~~D~~~ll~~~~~~~~~~~~p~i~~~MG~~ 185 (225)
T cd00502 147 VKIAVMANSIEDNLRLLKFTRQVKNLYDIPLIAINMGEL 185 (225)
T ss_pred EEEEecCCCHHHHHHHHHHHHHHHhcCCCCEEEEEcCCC
Confidence 67889999999999999988765 359999988873
No 136
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=54.84 E-value=51 Score=24.15 Aligned_cols=78 Identities=21% Similarity=0.214 Sum_probs=46.2
Q ss_pred cchhHHHHHHHHhccCccccceeeecCccEEEEcCCHHHHHHHHHHHHhCCCcEEEEcCCCCCCCCcc--cCCCCccceE
Q psy4717 3 STEDVEKVVQVAHDHNLVVNHQAIFIGTRYWCITESTEDVEKVVQVAHDHNLVIIPFGGGTNVTGAVA--CPENELRTII 80 (90)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~vv~P~s~~~v~~vv~~a~~~~i~v~~~G~G~n~~~~~~--~~~~~~~~gv 80 (90)
|++.+.++...+.+.... .+...+=+-++.| ++.++++.+++.++.+....+|+.+..... ..+.++ +.|
T Consensus 38 ~~e~~~~ii~~~~~~g~~---~v~~~GGEPll~~----~~~~ii~~~~~~g~~~~l~TNG~ll~~e~~~~L~~~g~-~~v 109 (358)
T TIGR02109 38 TTEEWTDVLTQAAELGVL---QLHFSGGEPLARP----DLVELVAHARRLGLYTNLITSGVGLTEARLDALADAGL-DHV 109 (358)
T ss_pred CHHHHHHHHHHHHhcCCc---EEEEeCccccccc----cHHHHHHHHHHcCCeEEEEeCCccCCHHHHHHHHhCCC-CEE
Confidence 567778877755444322 3333332223344 577899999999999999999986642110 011122 267
Q ss_pred EEEcCCCC
Q psy4717 81 SLDTSQMQ 88 (90)
Q Consensus 81 vIdl~~m~ 88 (90)
.|++...+
T Consensus 110 ~iSldg~~ 117 (358)
T TIGR02109 110 QLSFQGVD 117 (358)
T ss_pred EEeCcCCC
Confidence 78887654
No 137
>COG1920 Predicted nucleotidyltransferase, CobY/MobA/RfbA family [General function prediction only]
Probab=54.68 E-value=8 Score=27.26 Aligned_cols=29 Identities=48% Similarity=0.782 Sum_probs=23.0
Q ss_pred CHHHHHHHHHHHHhCCCcEEE-EcCCCCCC
Q psy4717 38 STEDVEKVVQVAHDHNLVIIP-FGGGTNVT 66 (90)
Q Consensus 38 s~~~v~~vv~~a~~~~i~v~~-~G~G~n~~ 66 (90)
+.++|+++++.++...+=+.| +|||||..
T Consensus 100 ~~~~i~~~~~~~~d~dvviaP~~gGGTn~L 129 (210)
T COG1920 100 SPEHIERALSAAKDADVVIAPGRGGGTNVL 129 (210)
T ss_pred CHHHHHHHHHhcCCCcEEEecCCCCceEEE
Confidence 469999999999887777777 46688764
No 138
>PRK00881 purH bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional
Probab=54.65 E-value=24 Score=28.19 Aligned_cols=35 Identities=17% Similarity=0.209 Sum_probs=24.9
Q ss_pred CccEEEEcCCHHHHHHHHHHHHhCCCcEEEEcCCC
Q psy4717 29 GTRYWCITESTEDVEKVVQVAHDHNLVIIPFGGGT 63 (90)
Q Consensus 29 ~p~~vv~P~s~~~v~~vv~~a~~~~i~v~~~G~G~ 63 (90)
+..++++|...=+=.++++.|+++|+.++.-|--|
T Consensus 476 Gv~aIiqPgGSirD~evI~aAne~gIamvfTg~Rh 510 (513)
T PRK00881 476 GITAIIQPGGSIRDEEVIAAADEHGIAMVFTGVRH 510 (513)
T ss_pred CCeEEEeCCCCCChHHHHHHHHHcCCEEEECCCCC
Confidence 46778888775344578888888888887766544
No 139
>PRK03670 competence damage-inducible protein A; Provisional
Probab=54.57 E-value=37 Score=24.37 Aligned_cols=36 Identities=19% Similarity=0.304 Sum_probs=29.4
Q ss_pred cEEEEcCCHHHHHHHHHHHHhCCCcEEEEcCCCCCC
Q psy4717 31 RYWCITESTEDVEKVVQVAHDHNLVIIPFGGGTNVT 66 (90)
Q Consensus 31 ~~vv~P~s~~~v~~vv~~a~~~~i~v~~~G~G~n~~ 66 (90)
...+.|.+.++|.+.++.+.+...-+++..||.+.+
T Consensus 38 ~~~iV~Dd~~~I~~~l~~a~~~~~DlVIttGGlGpt 73 (252)
T PRK03670 38 RITTVGDDVEEIKSVVLEILSRKPEVLVISGGLGPT 73 (252)
T ss_pred EEEEcCCCHHHHHHHHHHHhhCCCCEEEECCCccCC
Confidence 456779999999999988766566789999998774
No 140
>KOG3282|consensus
Probab=54.57 E-value=35 Score=23.78 Aligned_cols=36 Identities=17% Similarity=0.176 Sum_probs=29.4
Q ss_pred CccEEEEcCCHHHHHHHHHHHHhCCCcE-EEEcCCCC
Q psy4717 29 GTRYWCITESTEDVEKVVQVAHDHNLVI-IPFGGGTN 64 (90)
Q Consensus 29 ~p~~vv~P~s~~~v~~vv~~a~~~~i~v-~~~G~G~n 64 (90)
.|..++...+++++.++.+-|++.+++. +.+-.|-+
T Consensus 124 Q~KIvvk~~~e~~l~~l~~~A~~~gl~t~~i~DAGrT 160 (190)
T KOG3282|consen 124 QAKIVVKAESEEELMELQKDAKKLGLYTHLIQDAGRT 160 (190)
T ss_pred CceEEEEcCCHHHHHHHHHHHHHcCCcEEEEEcCCcc
Confidence 4999999999999999999999999874 34444443
No 141
>COG1319 CoxM Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs [Energy production and conversion]
Probab=54.39 E-value=16 Score=26.79 Aligned_cols=51 Identities=14% Similarity=0.084 Sum_probs=33.3
Q ss_pred cEEEEcCCHHHHHHHHHHHHhCCCcEEEEcCCCCCCCCcccCCCCccceEEEEcCCC
Q psy4717 31 RYWCITESTEDVEKVVQVAHDHNLVIIPFGGGTNVTGAVACPENELRTIISLDTSQM 87 (90)
Q Consensus 31 ~~vv~P~s~~~v~~vv~~a~~~~i~v~~~G~G~n~~~~~~~~~~~~~~gvvIdl~~m 87 (90)
--+.+|.|.+|...+++ +.+ .-.+++|||++.-..-. +-....-+||+.++
T Consensus 4 f~y~rp~Sv~eA~~ll~---~~~-~a~~laGGt~L~~~~k~--~~~~p~~lVdI~~l 54 (284)
T COG1319 4 FEYYRPASVEEALNLLA---RAP-DAKYLAGGTDLLPLMKL--GIERPDHLVDINGL 54 (284)
T ss_pred eEEECCCCHHHHHHHHH---hCC-CcEEeeCcchHHHHhhc--ccCCcceEEEecCC
Confidence 34789999988888776 555 67899999998621110 00113567777665
No 142
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=54.36 E-value=16 Score=24.76 Aligned_cols=34 Identities=6% Similarity=0.140 Sum_probs=29.0
Q ss_pred CccE-EEEcCCHHHHHHHHHHHHhCCCcEEEEcCC
Q psy4717 29 GTRY-WCITESTEDVEKVVQVAHDHNLVIIPFGGG 62 (90)
Q Consensus 29 ~p~~-vv~P~s~~~v~~vv~~a~~~~i~v~~~G~G 62 (90)
++++ ++.|.+.+.+..+++.|.+.|+|++.+...
T Consensus 55 ~~d~Iiv~~~~~~~~~~~l~~~~~~gIpvv~~d~~ 89 (257)
T PF13407_consen 55 GVDGIIVSPVDPDSLAPFLEKAKAAGIPVVTVDSD 89 (257)
T ss_dssp TESEEEEESSSTTTTHHHHHHHHHTTSEEEEESST
T ss_pred cCCEEEecCCCHHHHHHHHHHHhhcCceEEEEecc
Confidence 3664 558888888999999999999999998877
No 143
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=54.25 E-value=21 Score=26.78 Aligned_cols=28 Identities=18% Similarity=0.586 Sum_probs=23.5
Q ss_pred CHHHHHHHHHHHHhCCCc-EEEEcCCCCC
Q psy4717 38 STEDVEKVVQVAHDHNLV-IIPFGGGTNV 65 (90)
Q Consensus 38 s~~~v~~vv~~a~~~~i~-v~~~G~G~n~ 65 (90)
+.+.|.++++.+++.+.- ++.+|||+-+
T Consensus 69 ~~~~v~~~~~~~~~~~~D~IIaiGGGS~i 97 (383)
T cd08186 69 TVDQVDEAAKLGREFGAQAVIAIGGGSPI 97 (383)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCccHH
Confidence 678999999999999875 5559999865
No 144
>PRK09212 pyruvate dehydrogenase subunit beta; Validated
Probab=54.25 E-value=27 Score=25.78 Aligned_cols=29 Identities=10% Similarity=-0.028 Sum_probs=25.7
Q ss_pred cEEEEcCCHHHHHHHHHHHHhCCCcEEEE
Q psy4717 31 RYWCITESTEDVEKVVQVAHDHNLVIIPF 59 (90)
Q Consensus 31 ~~vv~P~s~~~v~~vv~~a~~~~i~v~~~ 59 (90)
--|+.|.+.+|+..+++++.+.+-|++.+
T Consensus 143 l~V~~P~d~~e~~~~l~~a~~~~~Pv~i~ 171 (327)
T PRK09212 143 LKVVAPYFAADCKGLLKTAIRDPNPVIFL 171 (327)
T ss_pred CEEEeeCCHHHHHHHHHHHHhCCCcEEEE
Confidence 36889999999999999999888898873
No 145
>cd02430 PTH2 Peptidyl-tRNA hydrolase, type 2 (PTH2). Peptidyl-tRNA hydrolase (PTH) activity releases tRNA from the premature translation termination product peptidyl-tRNA, therefore allowing the tRNA and peptide to be reused in protein synthesis. PTH2 is present in archaea and eukaryotes.
Probab=54.18 E-value=41 Score=21.30 Aligned_cols=33 Identities=15% Similarity=0.133 Sum_probs=27.6
Q ss_pred ccEEEEcCCHHHHHHHHHHHHhCCCcEEEE-cCC
Q psy4717 30 TRYWCITESTEDVEKVVQVAHDHNLVIIPF-GGG 62 (90)
Q Consensus 30 p~~vv~P~s~~~v~~vv~~a~~~~i~v~~~-G~G 62 (90)
+..|+...+++++.++.+.|.+.+++...+ -.|
T Consensus 50 ~KiVl~~~~~~el~~l~~~a~~~~l~~~~v~DAG 83 (115)
T cd02430 50 KKIVLKVNSEEELLELKKKAKSLGLPTSLIQDAG 83 (115)
T ss_pred cEEEEecCCHHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 777779999999999999999999985544 444
No 146
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=53.76 E-value=34 Score=23.33 Aligned_cols=34 Identities=12% Similarity=0.232 Sum_probs=25.5
Q ss_pred CccEEE-EcCCHHHHHHHHHHHHhCCCcEEEEcCC
Q psy4717 29 GTRYWC-ITESTEDVEKVVQVAHDHNLVIIPFGGG 62 (90)
Q Consensus 29 ~p~~vv-~P~s~~~v~~vv~~a~~~~i~v~~~G~G 62 (90)
+++.++ .|.+.+++...++.+.+.++|++.++..
T Consensus 57 ~vdgiii~~~~~~~~~~~l~~~~~~~ipvV~~~~~ 91 (271)
T cd06312 57 KPDGIVVTIPDPDALDPAIKRAVAAGIPVISFNAG 91 (271)
T ss_pred CCCEEEEeCCChHHhHHHHHHHHHCCCeEEEeCCC
Confidence 355444 5666666778889999999999999753
No 147
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=53.70 E-value=32 Score=20.92 Aligned_cols=28 Identities=11% Similarity=0.165 Sum_probs=23.5
Q ss_pred cCCHHHHHHHHHHHHhCCCcEEEEcCCC
Q psy4717 36 TESTEDVEKVVQVAHDHNLVIIPFGGGT 63 (90)
Q Consensus 36 P~s~~~v~~vv~~a~~~~i~v~~~G~G~ 63 (90)
.....++.++++.|++.|.+++.+.+..
T Consensus 56 sG~t~e~~~~~~~a~~~g~~vi~iT~~~ 83 (126)
T cd05008 56 SGETADTLAALRLAKEKGAKTVAITNVV 83 (126)
T ss_pred CcCCHHHHHHHHHHHHcCCeEEEEECCC
Confidence 3466789999999999999999887754
No 148
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=53.57 E-value=27 Score=27.38 Aligned_cols=34 Identities=18% Similarity=0.408 Sum_probs=25.2
Q ss_pred ccEEEEcCC------HHHHHHHHHHHHhCC-C--cEEEEcCCC
Q psy4717 30 TRYWCITES------TEDVEKVVQVAHDHN-L--VIIPFGGGT 63 (90)
Q Consensus 30 p~~vv~P~s------~~~v~~vv~~a~~~~-i--~v~~~G~G~ 63 (90)
...+++|.. .++|.+.++.+++.+ + =++.+||||
T Consensus 163 ~~viv~pt~VQG~~A~~eIv~aI~~an~~~~~DvlIVaRGGGS 205 (440)
T COG1570 163 VEVIVYPTLVQGEGAAEEIVEAIERANQRGDVDVLIVARGGGS 205 (440)
T ss_pred CeEEEEeccccCCCcHHHHHHHHHHhhccCCCCEEEEecCcch
Confidence 456666655 589999999999877 4 366677776
No 149
>cd06311 PBP1_ABC_sugar_binding_like_3 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=53.37 E-value=34 Score=23.35 Aligned_cols=34 Identities=9% Similarity=0.129 Sum_probs=26.2
Q ss_pred ccEE-EEcCCHHHHHHHHHHHHhCCCcEEEEcCCC
Q psy4717 30 TRYW-CITESTEDVEKVVQVAHDHNLVIIPFGGGT 63 (90)
Q Consensus 30 p~~v-v~P~s~~~v~~vv~~a~~~~i~v~~~G~G~ 63 (90)
++.+ +.|.+.+.+.+.++.+.+.++|++.++.+.
T Consensus 61 vDgiii~~~~~~~~~~~i~~~~~~gIpvV~~d~~~ 95 (274)
T cd06311 61 IDALVILPFESAPLTQPVAKAKKAGIFVVVVDRGL 95 (274)
T ss_pred CCEEEEeCCCchhhHHHHHHHHHCCCeEEEEcCCC
Confidence 6544 456677778888888999999999987653
No 150
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=53.34 E-value=41 Score=20.10 Aligned_cols=31 Identities=16% Similarity=0.048 Sum_probs=26.5
Q ss_pred ccEEEEcCCH---HHHHHHHHHHHhCCCcEEEEc
Q psy4717 30 TRYWCITEST---EDVEKVVQVAHDHNLVIIPFG 60 (90)
Q Consensus 30 p~~vv~P~s~---~~v~~vv~~a~~~~i~v~~~G 60 (90)
+++|+.+.+. .-...+-+.|++.++|++..-
T Consensus 49 aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~~~ 82 (97)
T PF10087_consen 49 ADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIYSR 82 (97)
T ss_pred CCEEEEEeCCcChHHHHHHHHHHHHcCCcEEEEC
Confidence 7999998865 678888999999999998863
No 151
>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases. It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....
Probab=52.89 E-value=13 Score=27.09 Aligned_cols=27 Identities=22% Similarity=0.327 Sum_probs=20.6
Q ss_pred EcCCHHHHHHHHHHHHhCCCcEEEEcC
Q psy4717 35 ITESTEDVEKVVQVAHDHNLVIIPFGG 61 (90)
Q Consensus 35 ~P~s~~~v~~vv~~a~~~~i~v~~~G~ 61 (90)
.|=+.++++++-++|+++++++..=|.
T Consensus 140 ~~~s~~el~ai~~~a~~~gl~lhmDGA 166 (290)
T PF01212_consen 140 TVYSLEELRAISELAREHGLPLHMDGA 166 (290)
T ss_dssp B---HHHHHHHHHHHHHHT-EEEEEET
T ss_pred eeCCHHHHHHHHHHHHhCceEEEEehh
Confidence 344568999999999999999998776
No 152
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=52.80 E-value=21 Score=26.70 Aligned_cols=29 Identities=21% Similarity=0.338 Sum_probs=23.3
Q ss_pred CCHHHHHHHHHHHHhCCCcE-EEEcCCCCC
Q psy4717 37 ESTEDVEKVVQVAHDHNLVI-IPFGGGTNV 65 (90)
Q Consensus 37 ~s~~~v~~vv~~a~~~~i~v-~~~G~G~n~ 65 (90)
.+.+.|.++++.+++++.-+ +.+||||-+
T Consensus 69 p~~~~v~~~~~~~~~~~~D~IIavGGGS~i 98 (377)
T cd08176 69 PTITNVKDGLAVFKKEGCDFIISIGGGSPH 98 (377)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEeCCcHHH
Confidence 35688999999999998864 459999863
No 153
>PRK14456 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=52.75 E-value=46 Score=25.22 Aligned_cols=33 Identities=15% Similarity=0.118 Sum_probs=21.4
Q ss_pred EEcCCHHHHHHHHHHHHhCCCcEEEEcC-CCCCC
Q psy4717 34 CITESTEDVEKVVQVAHDHNLVIIPFGG-GTNVT 66 (90)
Q Consensus 34 v~P~s~~~v~~vv~~a~~~~i~v~~~G~-G~n~~ 66 (90)
..|.+.+.+.+..++..++|+++.++.. |..+.
T Consensus 323 ~~~ps~e~i~~F~~~L~~~Gi~vtvR~~~G~di~ 356 (368)
T PRK14456 323 FEPVCSSTRERFRDRLLDAGLQVTVRKSYGTTIN 356 (368)
T ss_pred CCCCCHHHHHHHHHHHHHCCCcEEeeCCCCcchh
Confidence 3466667777777777777777777644 55443
No 154
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=52.06 E-value=16 Score=27.59 Aligned_cols=28 Identities=29% Similarity=0.466 Sum_probs=23.8
Q ss_pred CHHHHHHHHHHHHhCCCc-EEEEcCCCCC
Q psy4717 38 STEDVEKVVQVAHDHNLV-IIPFGGGTNV 65 (90)
Q Consensus 38 s~~~v~~vv~~a~~~~i~-v~~~G~G~n~ 65 (90)
+.++|.++++.+++.+.- ++.+||||.+
T Consensus 91 ~~~~v~~~~~~~r~~~~D~IiavGGGS~i 119 (395)
T PRK15454 91 CITDVCAAVAQLRESGCDGVIAFGGGSVL 119 (395)
T ss_pred CHHHHHHHHHHHHhcCcCEEEEeCChHHH
Confidence 457799999999999884 7889999976
No 155
>cd06268 PBP1_ABC_transporter_LIVBP_like Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. They are mostly present in archaea and eubacteria, and are primarily involved in scavenging solutes from the environment. ABC-type transporters couple ATP hydrolysis with the uptake and efflux of a wide range of substrates across bacterial membranes, including amino acids, peptides, lipids and sterols, and various drugs. These systems are comprised of transmembrane domains, nucleotide binding domains, and in most bacterial uptake systems, periplasmic binding proteins (PBPs) which transfer the ligand to the extracellular gate of the transmembrane domains. These PBPs bind their substrates selectively and with high affinity. Members of this group include ABC
Probab=51.22 E-value=25 Score=23.62 Aligned_cols=36 Identities=17% Similarity=0.082 Sum_probs=29.7
Q ss_pred CccEEEEcCCHHHHHHHHHHHHhCCCcEEEEcCCCC
Q psy4717 29 GTRYWCITESTEDVEKVVQVAHDHNLVIIPFGGGTN 64 (90)
Q Consensus 29 ~p~~vv~P~s~~~v~~vv~~a~~~~i~v~~~G~G~n 64 (90)
++++++-|.+......+.+++.+.++|++..+....
T Consensus 66 ~v~~iig~~~~~~~~~~~~~~~~~~ip~i~~~~~~~ 101 (298)
T cd06268 66 GVDAVIGPLSSGVALAAAPVAEEAGVPLISPGATSP 101 (298)
T ss_pred CceEEEcCCcchhHHhhHHHHHhCCCcEEccCCCCc
Confidence 478888888888888899999999999988766543
No 156
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=51.10 E-value=19 Score=21.67 Aligned_cols=21 Identities=19% Similarity=0.461 Sum_probs=17.1
Q ss_pred CHHHHHHHHHHHHhCCCcEEE
Q psy4717 38 STEDVEKVVQVAHDHNLVIIP 58 (90)
Q Consensus 38 s~~~v~~vv~~a~~~~i~v~~ 58 (90)
+.+|+.++++.|++++..+.+
T Consensus 98 ~~~~~~~l~~~a~~~~~~~~V 118 (120)
T PF01408_consen 98 TLEEAEELVEAAKEKGVKVMV 118 (120)
T ss_dssp SHHHHHHHHHHHHHHTSCEEE
T ss_pred CHHHHHHHHHHHHHhCCEEEE
Confidence 788888888888888877654
No 157
>PLN02683 pyruvate dehydrogenase E1 component subunit beta
Probab=51.02 E-value=32 Score=25.81 Aligned_cols=29 Identities=14% Similarity=0.035 Sum_probs=25.7
Q ss_pred cEEEEcCCHHHHHHHHHHHHhCCCcEEEE
Q psy4717 31 RYWCITESTEDVEKVVQVAHDHNLVIIPF 59 (90)
Q Consensus 31 ~~vv~P~s~~~v~~vv~~a~~~~i~v~~~ 59 (90)
--|+.|.+.+|+..+++++-+.+-|++.+
T Consensus 166 l~V~~Pad~~e~~~~l~~a~~~~gPv~ir 194 (356)
T PLN02683 166 LKVLAPYSSEDARGLLKAAIRDPDPVVFL 194 (356)
T ss_pred CEEEEeCCHHHHHHHHHHHHhCCCcEEEE
Confidence 45789999999999999999887788886
No 158
>cd08177 MAR Maleylacetate reductase is involved in many aromatic compounds degradation pathways of aerobic microbes. Maleylacetate reductases (MAR) play an important role in the degradation of aromatic compounds in aerobic microbes. In fungi and yeasts, the enzymes are involved in the catabolism of compounds such as phenol, tyrosine, benzoate, 4-hydroxybenzoate and resorcinol. In bacteria, the enzymes contribute to the degradation of resorcinol, 2,4-dihydroxybenzoate ([beta]-resorcylate) and 2,6-dihydroxybenzoate ([gamma]-resorcylate) via hydroxyquinol and maleylacetate. Maleylacetate reductases catalyze NADH- or NADPH-dependent reduction, at the carbon-carbon double bond, of maleylacetate or 2-chloromaleylacetate to 3-oxoadipate. In the case of 2-chloromaleylacetate, Maleylacetate reductases initially catalyses the NAD(P)H-dependent dechlorination to maleylacetate, which is then reduced to 3-oxoadipate. This enzyme is a homodimer. It is inhibited by thiol-blocking reagents such as p-
Probab=50.97 E-value=24 Score=25.95 Aligned_cols=28 Identities=29% Similarity=0.503 Sum_probs=22.1
Q ss_pred CHHHHHHHHHHHHhCCCc-EEEEcCCCCC
Q psy4717 38 STEDVEKVVQVAHDHNLV-IIPFGGGTNV 65 (90)
Q Consensus 38 s~~~v~~vv~~a~~~~i~-v~~~G~G~n~ 65 (90)
+.+.|.++++.+++.+.. ++.+|||+-+
T Consensus 62 ~~~~v~~~~~~~~~~~~d~IIaiGGGs~i 90 (337)
T cd08177 62 PVEVTEAAVAAAREAGADGIVAIGGGSTI 90 (337)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCcHHH
Confidence 467899999999988765 5559999855
No 159
>COG1979 Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family [Energy production and conversion]
Probab=50.84 E-value=23 Score=27.13 Aligned_cols=28 Identities=25% Similarity=0.592 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHhCCCc-EEEEcCCCCCC
Q psy4717 39 TEDVEKVVQVAHDHNLV-IIPFGGGTNVT 66 (90)
Q Consensus 39 ~~~v~~vv~~a~~~~i~-v~~~G~G~n~~ 66 (90)
.+-|.+.+++|+++++. +...||||-+-
T Consensus 71 ~~Tv~kaV~i~kee~idflLAVGGGSViD 99 (384)
T COG1979 71 LETLMKAVEICKEENIDFLLAVGGGSVID 99 (384)
T ss_pred HHHHHHHHHHHHHcCceEEEEecCcchhh
Confidence 48899999999999997 46788888653
No 160
>COG1879 RbsB ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=50.78 E-value=31 Score=24.56 Aligned_cols=35 Identities=6% Similarity=0.041 Sum_probs=30.5
Q ss_pred cEEEEcCCHHHHHHHHHHHHhCCCcEEEEcCCCCC
Q psy4717 31 RYWCITESTEDVEKVVQVAHDHNLVIIPFGGGTNV 65 (90)
Q Consensus 31 ~~vv~P~s~~~v~~vv~~a~~~~i~v~~~G~G~n~ 65 (90)
..++.|.+...+..+++.+.+.|+|++.+-..-..
T Consensus 94 aIiv~~~d~~~~~~~v~~a~~aGIpVv~~d~~~~~ 128 (322)
T COG1879 94 AIIINPVDPDALTPAVKKAKAAGIPVVTVDSDIPG 128 (322)
T ss_pred EEEEcCCChhhhHHHHHHHHHCCCcEEEEecCCCC
Confidence 56778999999999999999999999998776543
No 161
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=50.76 E-value=24 Score=26.34 Aligned_cols=28 Identities=36% Similarity=0.611 Sum_probs=23.2
Q ss_pred CHHHHHHHHHHHHhCCCc-EEEEcCCCCC
Q psy4717 38 STEDVEKVVQVAHDHNLV-IIPFGGGTNV 65 (90)
Q Consensus 38 s~~~v~~vv~~a~~~~i~-v~~~G~G~n~ 65 (90)
+.+.|.++++.+++++.. ++.+||||-+
T Consensus 65 ~~~~v~~~~~~~~~~~~D~IIaiGGGS~~ 93 (375)
T cd08194 65 TDESVEEGVKLAKEGGCDVIIALGGGSPI 93 (375)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCchHH
Confidence 478899999999999886 5559999865
No 162
>PRK13937 phosphoheptose isomerase; Provisional
Probab=50.70 E-value=36 Score=22.88 Aligned_cols=27 Identities=15% Similarity=0.260 Sum_probs=23.8
Q ss_pred EcCCHHHHHHHHHHHHhCCCcEEEEcC
Q psy4717 35 ITESTEDVEKVVQVAHDHNLVIIPFGG 61 (90)
Q Consensus 35 ~P~s~~~v~~vv~~a~~~~i~v~~~G~ 61 (90)
......++.++++.|++.|++++.+.+
T Consensus 115 ~sG~t~~~~~~~~~ak~~g~~~I~iT~ 141 (188)
T PRK13937 115 TSGNSPNVLAALEKARELGMKTIGLTG 141 (188)
T ss_pred CCCCcHHHHHHHHHHHHCCCeEEEEeC
Confidence 355789999999999999999999866
No 163
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=50.54 E-value=25 Score=26.11 Aligned_cols=30 Identities=30% Similarity=0.550 Sum_probs=25.3
Q ss_pred CCHHHHHHHHHHHHhCCC-cEEEEcCCCCCC
Q psy4717 37 ESTEDVEKVVQVAHDHNL-VIIPFGGGTNVT 66 (90)
Q Consensus 37 ~s~~~v~~vv~~a~~~~i-~v~~~G~G~n~~ 66 (90)
.+.++|.++++.+++.+. -++.+|||+.+-
T Consensus 67 p~~~~v~~~~~~~~~~~~D~IIavGGGSviD 97 (357)
T cd08181 67 PSLETIMEAVEIAKKFNADFVIGIGGGSPLD 97 (357)
T ss_pred cCHHHHHHHHHHHHhcCCCEEEEeCCchHHH
Confidence 477889999999999987 478899999763
No 164
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=50.33 E-value=60 Score=24.05 Aligned_cols=78 Identities=24% Similarity=0.224 Sum_probs=45.7
Q ss_pred cchhHHHHHHHHhccCccccceeeecCccEEEEcCCHHHHHHHHHHHHhCCCcEEEEcCCCCCCCCcc--cCCCCccceE
Q psy4717 3 STEDVEKVVQVAHDHNLVVNHQAIFIGTRYWCITESTEDVEKVVQVAHDHNLVIIPFGGGTNVTGAVA--CPENELRTII 80 (90)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~vv~P~s~~~v~~vv~~a~~~~i~v~~~G~G~n~~~~~~--~~~~~~~~gv 80 (90)
+.+.+.++...+...... .+...+=+-++.| ++.++++.+++.++.+....+|+.+..-.. ..+-++ +.|
T Consensus 47 ~~e~~~~ii~~~~~~g~~---~v~~~GGEPll~~----~~~~il~~~~~~g~~~~i~TNG~ll~~~~~~~L~~~g~-~~v 118 (378)
T PRK05301 47 STEEWIRVLREARALGAL---QLHFSGGEPLLRK----DLEELVAHARELGLYTNLITSGVGLTEARLAALKDAGL-DHI 118 (378)
T ss_pred CHHHHHHHHHHHHHcCCc---EEEEECCccCCch----hHHHHHHHHHHcCCcEEEECCCccCCHHHHHHHHHcCC-CEE
Confidence 567777777755444322 3333332223343 578899999999999999999986642110 011112 367
Q ss_pred EEEcCCCC
Q psy4717 81 SLDTSQMQ 88 (90)
Q Consensus 81 vIdl~~m~ 88 (90)
.|++..++
T Consensus 119 ~iSldg~~ 126 (378)
T PRK05301 119 QLSFQDSD 126 (378)
T ss_pred EEEecCCC
Confidence 78887653
No 165
>PRK06683 hypothetical protein; Provisional
Probab=50.25 E-value=33 Score=20.35 Aligned_cols=34 Identities=18% Similarity=0.195 Sum_probs=27.9
Q ss_pred CccEEEEcCCHHH--HHHHHHHHHhCCCcEEEEcCC
Q psy4717 29 GTRYWCITESTED--VEKVVQVAHDHNLVIIPFGGG 62 (90)
Q Consensus 29 ~p~~vv~P~s~~~--v~~vv~~a~~~~i~v~~~G~G 62 (90)
.+..|+..++.++ ...+..+|+.+++|+.-+...
T Consensus 27 kaklViiA~Da~~~~~~~i~~~~~~~~Vpv~~~~t~ 62 (82)
T PRK06683 27 IVKEVVIAEDADMRLTHVIIRTALQHNIPITKVESV 62 (82)
T ss_pred CeeEEEEECCCCHHHHHHHHHHHHhcCCCEEEECCH
Confidence 4777888887766 688899999999999988753
No 166
>PRK04175 rpl7ae 50S ribosomal protein L7Ae; Validated
Probab=50.24 E-value=28 Score=22.22 Aligned_cols=33 Identities=9% Similarity=0.225 Sum_probs=27.6
Q ss_pred ccEEEEcCCHH--H-HHHHHHHHHhCCCcEEEEcCC
Q psy4717 30 TRYWCITESTE--D-VEKVVQVAHDHNLVIIPFGGG 62 (90)
Q Consensus 30 p~~vv~P~s~~--~-v~~vv~~a~~~~i~v~~~G~G 62 (90)
+..|+...+++ + ...+..+|.++++|+...+.-
T Consensus 47 akLVilA~D~s~~~i~~~~~~lc~~~~Vp~~~~~tk 82 (122)
T PRK04175 47 AKLVVIAEDVDPEEIVAHLPLLCEEKKIPYVYVPSK 82 (122)
T ss_pred ccEEEEeCCCChHHHHHHHHHHHHHcCCCEEEECCH
Confidence 88889998884 4 479999999999999888753
No 167
>cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria. NADPH-dependent butanol dehydrogenase (BDH) is involved in the butanol and ethanol formation pathway of some bacteria. The fermentation process is characterized by an acid producing growth phase, followed by a solvent producing phase. The latter phase is associated with the induction of solventogenic enzymes such as butanol dehydrogenase. The activity of the enzymes require NADPH as cofactor, as well as divalent ions zinc or iron. This family is a member of the iron-containing alcohol dehydrogenase superfamily. Protein structure has a dehydroquinate synthase-like fold.
Probab=50.11 E-value=27 Score=26.07 Aligned_cols=29 Identities=31% Similarity=0.461 Sum_probs=24.2
Q ss_pred CCHHHHHHHHHHHHhCCC-cEEEEcCCCCC
Q psy4717 37 ESTEDVEKVVQVAHDHNL-VIIPFGGGTNV 65 (90)
Q Consensus 37 ~s~~~v~~vv~~a~~~~i-~v~~~G~G~n~ 65 (90)
.+.+.|.++++.+++.+. -++.+||||-+
T Consensus 65 p~~~~v~~~~~~~~~~~~D~IIavGGGSvi 94 (375)
T cd08179 65 PSVETVLKGAEAMREFEPDWIIALGGGSPI 94 (375)
T ss_pred cCHHHHHHHHHHHHhcCCCEEEEeCCccHH
Confidence 466889999999999887 47779999865
No 168
>COG0138 PurH AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful) [Nucleotide transport and metabolism]
Probab=50.04 E-value=25 Score=28.00 Aligned_cols=35 Identities=14% Similarity=0.218 Sum_probs=26.9
Q ss_pred CccEEEEcCCHHHHHHHHHHHHhCCCcEEEEcCCC
Q psy4717 29 GTRYWCITESTEDVEKVVQVAHDHNLVIIPFGGGT 63 (90)
Q Consensus 29 ~p~~vv~P~s~~~v~~vv~~a~~~~i~v~~~G~G~ 63 (90)
+..+|++|.--=-=+++++.|+++|+.++.-|-.|
T Consensus 478 Gi~aIIqPGGSirD~eVI~aAde~giaMvfTg~Rh 512 (515)
T COG0138 478 GIKAIIQPGGSIRDQEVIAAADEHGIAMVFTGVRH 512 (515)
T ss_pred CCeEEECCCCccccHHHHHHHHhcCcEEEEccccc
Confidence 37788999765444778899999999998866544
No 169
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=50.01 E-value=23 Score=26.06 Aligned_cols=28 Identities=29% Similarity=0.718 Sum_probs=23.2
Q ss_pred CHHHHHHHHHHHHhCCC-cEEEEcCCCCC
Q psy4717 38 STEDVEKVVQVAHDHNL-VIIPFGGGTNV 65 (90)
Q Consensus 38 s~~~v~~vv~~a~~~~i-~v~~~G~G~n~ 65 (90)
+.++|.++++.+++++. -++.+|||+.+
T Consensus 62 ~~~~v~~~~~~~~~~~~D~IIavGGGS~i 90 (351)
T cd08170 62 TRAEIERLAEIARDNGADVVIGIGGGKTL 90 (351)
T ss_pred CHHHHHHHHHHHhhcCCCEEEEecCchhh
Confidence 56889999999998876 57889999865
No 170
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=49.93 E-value=25 Score=26.24 Aligned_cols=29 Identities=31% Similarity=0.494 Sum_probs=24.6
Q ss_pred CCHHHHHHHHHHHHhCCC-cEEEEcCCCCC
Q psy4717 37 ESTEDVEKVVQVAHDHNL-VIIPFGGGTNV 65 (90)
Q Consensus 37 ~s~~~v~~vv~~a~~~~i-~v~~~G~G~n~ 65 (90)
.+.+.|.++++.+++.++ -++.+|||+-+
T Consensus 67 p~~~~v~~~~~~~~~~~~D~IIaiGGGs~i 96 (376)
T cd08193 67 PPEAVVEAAVEAARAAGADGVIGFGGGSSM 96 (376)
T ss_pred cCHHHHHHHHHHHHhcCCCEEEEeCCchHH
Confidence 467889999999999887 58889999865
No 171
>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated
Probab=49.52 E-value=36 Score=25.20 Aligned_cols=30 Identities=13% Similarity=0.120 Sum_probs=26.3
Q ss_pred ccE-EEEcCCHHHHHHHHHHHHhCCCcEEEE
Q psy4717 30 TRY-WCITESTEDVEKVVQVAHDHNLVIIPF 59 (90)
Q Consensus 30 p~~-vv~P~s~~~v~~vv~~a~~~~i~v~~~ 59 (90)
|.. |+.|.+..|...+++++.+.+-|++.+
T Consensus 141 Pgl~V~~Psd~~d~~~~l~~a~~~~~Pv~ir 171 (327)
T CHL00144 141 PGLQIVACSTPYNAKGLLKSAIRSNNPVIFF 171 (327)
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhCCCcEEEE
Confidence 533 788999999999999999988899985
No 172
>TIGR02637 RhaS rhamnose ABC transporter, rhamnose-binding protein. This sugar-binding component of ABC transporter complexes is found in rhamnose catabolism operon contexts. Mutation of this gene in Rhizobium leguminosarum abolishes rhamnose transport and prevents growth on rhamnose as a carbon source.
Probab=49.48 E-value=46 Score=23.22 Aligned_cols=33 Identities=6% Similarity=0.176 Sum_probs=25.7
Q ss_pred ccE-EEEcCCHHHHHHHHHHHHhCCCcEEEEcCC
Q psy4717 30 TRY-WCITESTEDVEKVVQVAHDHNLVIIPFGGG 62 (90)
Q Consensus 30 p~~-vv~P~s~~~v~~vv~~a~~~~i~v~~~G~G 62 (90)
++. ++.|.+.+.+...++.+.+.++|++.++..
T Consensus 57 vdgiIi~~~~~~~~~~~l~~~~~~giPvV~~~~~ 90 (302)
T TIGR02637 57 VDAIAISANDPDALVPALKKAMKRGIKVVTWDSG 90 (302)
T ss_pred CCEEEEeCCChHHHHHHHHHHHHCCCEEEEeCCC
Confidence 554 445666777788899999999999998764
No 173
>PRK06852 aldolase; Validated
Probab=49.45 E-value=20 Score=26.57 Aligned_cols=22 Identities=23% Similarity=0.519 Sum_probs=18.5
Q ss_pred cCCHHHHHHHHHHHHhCCCcEE
Q psy4717 36 TESTEDVEKVVQVAHDHNLVII 57 (90)
Q Consensus 36 P~s~~~v~~vv~~a~~~~i~v~ 57 (90)
.+..+++.++.+.|.++|+|++
T Consensus 150 ~~ml~~l~~v~~ea~~~GlPll 171 (304)
T PRK06852 150 SEMLSEAAQIIYEAHKHGLIAV 171 (304)
T ss_pred HHHHHHHHHHHHHHHHhCCcEE
Confidence 4455788999999999999987
No 174
>cd08172 GlyDH-like1 Glycerol dehydrogenases-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=49.23 E-value=25 Score=25.88 Aligned_cols=29 Identities=31% Similarity=0.513 Sum_probs=23.5
Q ss_pred CCHHHHHHHHHHHHhCCCc-EEEEcCCCCC
Q psy4717 37 ESTEDVEKVVQVAHDHNLV-IIPFGGGTNV 65 (90)
Q Consensus 37 ~s~~~v~~vv~~a~~~~i~-v~~~G~G~n~ 65 (90)
.+.++|.++++.+++.+.. ++.+|||+-+
T Consensus 60 p~~~~v~~~~~~~~~~~~D~iIavGGGs~~ 89 (347)
T cd08172 60 CSEENIERLAAQAKENGADVIIGIGGGKVL 89 (347)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEeCCcHHH
Confidence 7889999999999988775 5558888754
No 175
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=49.10 E-value=43 Score=21.96 Aligned_cols=28 Identities=14% Similarity=0.131 Sum_probs=23.8
Q ss_pred EcCCHHHHHHHHHHHHhCCCcEEEEcCC
Q psy4717 35 ITESTEDVEKVVQVAHDHNLVIIPFGGG 62 (90)
Q Consensus 35 ~P~s~~~v~~vv~~a~~~~i~v~~~G~G 62 (90)
......++.++++.|+++|++++.+.+-
T Consensus 81 ~sG~t~~~i~~~~~ak~~g~~ii~IT~~ 108 (179)
T TIGR03127 81 GSGETESLVTVAKKAKEIGATVAAITTN 108 (179)
T ss_pred CCCCcHHHHHHHHHHHHCCCeEEEEECC
Confidence 3456799999999999999999998663
No 176
>PRK14464 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=49.09 E-value=53 Score=24.77 Aligned_cols=66 Identities=17% Similarity=0.170 Sum_probs=43.1
Q ss_pred cchhHHHHHHHHhccCccccceeeecCccEEEEcCCHHHHHHHHHHHHhCCCcEEEEcC-CCCCCCC
Q psy4717 3 STEDVEKVVQVAHDHNLVVNHQAIFIGTRYWCITESTEDVEKVVQVAHDHNLVIIPFGG-GTNVTGA 68 (90)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~vv~P~s~~~v~~vv~~a~~~~i~v~~~G~-G~n~~~~ 68 (90)
|.++..+|++...+.....|---|..-+..-..+.+.+.+.+..+...++|+++.++-. |..+.++
T Consensus 256 s~e~a~~L~~~l~~~~~~vNLIPyN~v~g~~~~rp~~~~i~~f~~~L~~~gi~~tiR~~~G~di~aA 322 (344)
T PRK14464 256 SDEEMDGIVRLLKGKYAVMNLIPYNSVDGDAYRRPSGERIVAMARYLHRRGVLTKVRNSAGQDVDGG 322 (344)
T ss_pred CHHHHHHHHHHHhccccccceecCCccCCCCccCCCHHHHHHHHHHHHHCCceEEEECCCCCchhhc
Confidence 56778888886654432211111222234446677789999999999999999998854 6666443
No 177
>PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=48.80 E-value=46 Score=25.47 Aligned_cols=66 Identities=14% Similarity=0.087 Sum_probs=46.0
Q ss_pred cchhHHHHHHHHhcc----CccccceeeecC--ccEEEEcCCHHHHHHHHHHHHhCCCcEEEEcC-CCCCCCC
Q psy4717 3 STEDVEKVVQVAHDH----NLVVNHQAIFIG--TRYWCITESTEDVEKVVQVAHDHNLVIIPFGG-GTNVTGA 68 (90)
Q Consensus 3 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~--p~~vv~P~s~~~v~~vv~~a~~~~i~v~~~G~-G~n~~~~ 68 (90)
|.++.++|++...+. ++...-+.+... +..=+.+.+.+.+.+..+...++|+++.++-. |..+.++
T Consensus 285 s~e~A~~L~~llk~~~~~~~l~~~VNLIp~Np~~~~~~~~ps~~~i~~F~~~L~~~gi~vtiR~s~G~DI~AA 357 (371)
T PRK14461 285 HPEQAAALARLLRGEAPPGPLLVHVNLIPWNPVPGTPLGRSERERVTTFQRILTDYGIPCTVRVERGVEIAAA 357 (371)
T ss_pred CHHHHHHHHHHHcCCccccCCceEEEEecCCCCCCCCCCCCCHHHHHHHHHHHHHCCceEEEeCCCCcChhhc
Confidence 567888888877665 112122333333 45557788999999999999999999999853 7666543
No 178
>PRK10178 D-alanyl-D-alanine dipeptidase; Provisional
Probab=48.68 E-value=20 Score=24.79 Aligned_cols=45 Identities=18% Similarity=0.197 Sum_probs=31.2
Q ss_pred HHhccCccccceeeecCccEEEEcCCHHHHHHHHHHHHhCCCcEEEE
Q psy4717 13 VAHDHNLVVNHQAIFIGTRYWCITESTEDVEKVVQVAHDHNLVIIPF 59 (90)
Q Consensus 13 ~~~~~~~~~~~~~~~~~p~~vv~P~s~~~v~~vv~~a~~~~i~v~~~ 59 (90)
|+...|+. ...+|. .+.|++.+.-++.+.++.+.++..|+.+.++
T Consensus 23 Yat~~NF~-g~~iY~-~~~c~l~~~aA~aL~~a~~~l~~~G~~L~I~ 67 (184)
T PRK10178 23 YATADNLT-GKPIYR-EARCLLHKDAEAALRKAVSIAQLAGLTLRIY 67 (184)
T ss_pred eccCCCcC-CCcccc-CCeEEECHHHHHHHHHHHHHHHhCCCeEEEE
Confidence 34444433 223344 5899999999999999988888878776654
No 179
>PF09970 DUF2204: Nucleotidyl transferase of unknown function (DUF2204); InterPro: IPR018700 This family of hypothetical prokaryotic proteins has no known function.
Probab=48.63 E-value=24 Score=23.98 Aligned_cols=25 Identities=12% Similarity=0.343 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHhCCCcEEEEcCCCC
Q psy4717 40 EDVEKVVQVAHDHNLVIIPFGGGTN 64 (90)
Q Consensus 40 ~~v~~vv~~a~~~~i~v~~~G~G~n 64 (90)
+++.++++..+++++.+++.||.-.
T Consensus 3 ~~l~~~~~~L~~~gv~~~ivGG~av 27 (181)
T PF09970_consen 3 EALKEILEELNKRGVEYVIVGGAAV 27 (181)
T ss_pred HHHHHHHHHHHHcCCeEEEECHHHH
Confidence 6889999999999999999998763
No 180
>COG0710 AroD 3-dehydroquinate dehydratase [Amino acid transport and metabolism]
Probab=48.62 E-value=40 Score=24.10 Aligned_cols=35 Identities=17% Similarity=0.308 Sum_probs=30.7
Q ss_pred ccEEEEcCCHHHHHHHHHHHHh---CCCcEEEEcCCCC
Q psy4717 30 TRYWCITESTEDVEKVVQVAHD---HNLVIIPFGGGTN 64 (90)
Q Consensus 30 p~~vv~P~s~~~v~~vv~~a~~---~~i~v~~~G~G~n 64 (90)
+..++.|++.+|+-.++++.++ .+.|++.++-|..
T Consensus 150 vKiAvm~~~~~DvL~ll~~~~~~~~~~~p~i~i~MG~~ 187 (231)
T COG0710 150 VKIAVMPQSKEDVLDLLEATREFKEAEKPVITISMGKT 187 (231)
T ss_pred EEEEecCCCHHHHHHHHHHHHhccccCCCEEEEecCCC
Confidence 7889999999999999999997 5788888887764
No 181
>cd08190 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism. Hydroxyacid-oxoacid transhydrogenase (HOT), also known as D-2-hydroxyglutarate transhydrogenase. It catalyzes the conversion of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA), coupled to the stoichiometric conversion of alpha-ketoglutarate to D-2-hydroxyglutarate in gamma-Hydroxybutyrate catabolism. Unlike many other alcohols, which are oxidized by NAD-linked dehydrogenases, gamma-hydroxybutyrate is metabolized to succinate semialdehyde by hydroxyacid-oxoacid transhydrogenase which does not require free NAD or NADP, but instead using alpha -ketoglutarate as an acceptor, converting it to d-2-hydroxyglutarate. Alpha-ketoglutarate serves as an intermediate acceptor to regenerate NAD(P) required for the oxidation of GHB. HOT also catalyzes the reversible oxidation of a hydroxyacid obligatorily coupled to the reduction of an oxoacid, and requires no cofactor. In mammals, the HOT
Probab=48.51 E-value=28 Score=26.43 Aligned_cols=28 Identities=18% Similarity=0.502 Sum_probs=24.3
Q ss_pred CHHHHHHHHHHHHhCCC-cEEEEcCCCCC
Q psy4717 38 STEDVEKVVQVAHDHNL-VIIPFGGGTNV 65 (90)
Q Consensus 38 s~~~v~~vv~~a~~~~i-~v~~~G~G~n~ 65 (90)
+.+.|.++++.+++.+. -++.+|||+-+
T Consensus 65 ~~~~v~~~~~~~~~~~~D~IIaiGGGSvi 93 (414)
T cd08190 65 TDESFKDAIAFAKKGQFDAFVAVGGGSVI 93 (414)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCccHH
Confidence 67899999999999887 47889999866
No 182
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=48.48 E-value=1e+02 Score=24.11 Aligned_cols=34 Identities=12% Similarity=0.128 Sum_probs=32.3
Q ss_pred CccEEEEcCCHHHHHHHHHHHHhCCCcEEEEcCC
Q psy4717 29 GTRYWCITESTEDVEKVVQVAHDHNLVIIPFGGG 62 (90)
Q Consensus 29 ~p~~vv~P~s~~~v~~vv~~a~~~~i~v~~~G~G 62 (90)
....++.|+..|-..++-+.|.++|+++..++.|
T Consensus 260 ~~llIlVPRHpERf~~v~~l~~~~gl~~~~rS~~ 293 (419)
T COG1519 260 NLLLILVPRHPERFKAVENLLKRKGLSVTRRSQG 293 (419)
T ss_pred CceEEEecCChhhHHHHHHHHHHcCCeEEeecCC
Confidence 4678999999999999999999999999999999
No 183
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=48.33 E-value=43 Score=20.25 Aligned_cols=29 Identities=10% Similarity=0.255 Sum_probs=24.6
Q ss_pred EcCCHHHHHHHHHHHHhCCCcEEEEcCCC
Q psy4717 35 ITESTEDVEKVVQVAHDHNLVIIPFGGGT 63 (90)
Q Consensus 35 ~P~s~~~v~~vv~~a~~~~i~v~~~G~G~ 63 (90)
.+....++.++++.+++.+.+++.+....
T Consensus 62 ~sg~~~~~~~~~~~ak~~g~~vi~iT~~~ 90 (131)
T PF01380_consen 62 YSGETRELIELLRFAKERGAPVILITSNS 90 (131)
T ss_dssp SSSTTHHHHHHHHHHHHTTSEEEEEESST
T ss_pred ccccchhhhhhhHHHHhcCCeEEEEeCCC
Confidence 46777999999999999999998887543
No 184
>PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen). Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A.
Probab=48.29 E-value=13 Score=28.55 Aligned_cols=25 Identities=8% Similarity=0.316 Sum_probs=17.2
Q ss_pred EEcCCHHHHHHHHHHHHhCCCcEEE
Q psy4717 34 CITESTEDVEKVVQVAHDHNLVIIP 58 (90)
Q Consensus 34 v~P~s~~~v~~vv~~a~~~~i~v~~ 58 (90)
+.|+-.+++.++-++|+++++|.++
T Consensus 166 fapr~~D~i~~IakiC~~~~IPhlv 190 (389)
T PF05889_consen 166 FAPRLPDDIEEIAKICKEYDIPHLV 190 (389)
T ss_dssp TTTB----HHHHHHHHHHHT--EEE
T ss_pred cCCCCCccHHHHHHHHHHcCCceEE
Confidence 5688889999999999999999987
No 185
>cd01539 PBP1_GGBP Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. GGBP is a member of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic GGBP is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=48.17 E-value=47 Score=23.39 Aligned_cols=34 Identities=18% Similarity=0.256 Sum_probs=26.3
Q ss_pred CccEEE-EcCCHHHHHHHHHHHHhCCCcEEEEcCC
Q psy4717 29 GTRYWC-ITESTEDVEKVVQVAHDHNLVIIPFGGG 62 (90)
Q Consensus 29 ~p~~vv-~P~s~~~v~~vv~~a~~~~i~v~~~G~G 62 (90)
+++.++ .|.+.+.+..+++.+.+.++|++.++..
T Consensus 57 ~vdgiii~~~~~~~~~~~~~~~~~~giPvV~~~~~ 91 (303)
T cd01539 57 GVDLLAVNLVDPTAAQTVINKAKQKNIPVIFFNRE 91 (303)
T ss_pred CCCEEEEecCchhhHHHHHHHHHHCCCCEEEeCCC
Confidence 366544 5767666788999999999999998764
No 186
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=48.06 E-value=82 Score=21.94 Aligned_cols=31 Identities=19% Similarity=0.119 Sum_probs=23.7
Q ss_pred CccEEEEcCCHHHHHHHHHHHHhCCCcEEEE
Q psy4717 29 GTRYWCITESTEDVEKVVQVAHDHNLVIIPF 59 (90)
Q Consensus 29 ~p~~vv~P~s~~~v~~vv~~a~~~~i~v~~~ 59 (90)
+--.|++..+.++...+++.+.+.|++++=+
T Consensus 14 ~vi~vir~~~~~~a~~~~~al~~~Gi~~iEi 44 (213)
T PRK06552 14 GVVAVVRGESKEEALKISLAVIKGGIKAIEV 44 (213)
T ss_pred CEEEEEECCCHHHHHHHHHHHHHCCCCEEEE
Confidence 3445788888888888888888888876544
No 187
>PF09383 NIL: NIL domain; InterPro: IPR018449 This domain is found at the C terminus of ABC transporter proteins involved in D-methionine transport as well as a number of ferredoxin-like proteins. This domain is likely to act as a substrate binding domain. The domain has been named after a conserved sequence in some members of the family. ; PDB: 2QRR_A 3CED_A 2QSW_A 3TUZ_D 3TUJ_D 3DHX_B 3TUI_H 3DHW_D.
Probab=47.82 E-value=50 Score=18.65 Aligned_cols=28 Identities=11% Similarity=0.210 Sum_probs=22.6
Q ss_pred ccEEEEcCCHHHHHHHHHHHHhCCCcEE
Q psy4717 30 TRYWCITESTEDVEKVVQVAHDHNLVII 57 (90)
Q Consensus 30 p~~vv~P~s~~~v~~vv~~a~~~~i~v~ 57 (90)
--.+-.+.+.+++.+++++.+++++.+=
T Consensus 47 ~l~l~l~g~~~~~~~a~~~L~~~~v~vE 74 (76)
T PF09383_consen 47 ILILELPGDDEEIEKAIAYLREQGVEVE 74 (76)
T ss_dssp EEEEEEES-HHHHHHHHHHHHHTTEEEE
T ss_pred EEEEEEECCHHHHHHHHHHHHHCCCeEE
Confidence 4566778999999999999999987664
No 188
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=47.82 E-value=27 Score=23.68 Aligned_cols=26 Identities=23% Similarity=0.450 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHhCCCcEEEEcCCCCC
Q psy4717 40 EDVEKVVQVAHDHNLVIIPFGGGTNV 65 (90)
Q Consensus 40 ~~v~~vv~~a~~~~i~v~~~G~G~n~ 65 (90)
+.+.+++++++++|+++.+.++|...
T Consensus 77 pG~~e~l~~l~~~g~~~~IvS~~~~~ 102 (219)
T PRK09552 77 EGFHEFVQFVKENNIPFYVVSGGMDF 102 (219)
T ss_pred cCHHHHHHHHHHcCCeEEEECCCcHH
Confidence 46778899999999999999999864
No 189
>PRK14468 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=47.73 E-value=54 Score=24.49 Aligned_cols=61 Identities=8% Similarity=-0.023 Sum_probs=37.9
Q ss_pred chhHHHHHHHHhccCccccceeeecCc--cEEEEcCCHHHHHHHHHHHHhCCCcEEEEcC-CCCCC
Q psy4717 4 TEDVEKVVQVAHDHNLVVNHQAIFIGT--RYWCITESTEDVEKVVQVAHDHNLVIIPFGG-GTNVT 66 (90)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~p--~~vv~P~s~~~v~~vv~~a~~~~i~v~~~G~-G~n~~ 66 (90)
-+++.+++........ .-+.+...| ..-+.+.+.+++.++.++..++|+++.++-. |..+.
T Consensus 261 ~e~~~~L~~ll~~~~~--~VnLIPynp~~~~~~~~ps~e~i~~f~~~L~~~Gi~vtiR~~~g~di~ 324 (343)
T PRK14468 261 LWQAELLADLLRGLVS--HVNLIPFNPWEGSPFQSSPRAQILAFADVLERRGVPVSVRWSRGRDVG 324 (343)
T ss_pred HHHHHHHHHHHhcCCc--EEEEEcCCCCCCCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCcchh
Confidence 3456777776655431 122222222 3346777888888888888888998888744 55443
No 190
>COG2144 Selenophosphate synthetase-related proteins [General function prediction only]
Probab=47.72 E-value=35 Score=25.65 Aligned_cols=36 Identities=25% Similarity=0.290 Sum_probs=29.0
Q ss_pred cc-EEEEcCCHHHHHHHHHHHHhCCCcEEEEcC---CCCC
Q psy4717 30 TR-YWCITESTEDVEKVVQVAHDHNLVIIPFGG---GTNV 65 (90)
Q Consensus 30 p~-~vv~P~s~~~v~~vv~~a~~~~i~v~~~G~---G~n~ 65 (90)
|. -++..-+.+++.+++++|.+.++|+.+.|- ++++
T Consensus 258 pg~gfv~~v~pe~veev~~v~~~~g~~a~~~GeVie~~~L 297 (324)
T COG2144 258 PGSGFVLTVDPEDVEEVVDVFEEEGCPATVIGEVIEEPVL 297 (324)
T ss_pred CCCcEEEEeCHHHHHHHHHHHHHcCCceEEEEEeccCceE
Confidence 44 566666778999999999999999999875 5554
No 191
>PRK08227 autoinducer 2 aldolase; Validated
Probab=47.69 E-value=24 Score=25.65 Aligned_cols=23 Identities=9% Similarity=0.261 Sum_probs=18.6
Q ss_pred cCCHHHHHHHHHHHHhCCCcEEE
Q psy4717 36 TESTEDVEKVVQVAHDHNLVIIP 58 (90)
Q Consensus 36 P~s~~~v~~vv~~a~~~~i~v~~ 58 (90)
.+..+++.++.+.|.+.|+|++.
T Consensus 123 ~~~l~~l~~v~~ea~~~G~Plla 145 (264)
T PRK08227 123 HQSIKNIIQLVDAGLRYGMPVMA 145 (264)
T ss_pred HHHHHHHHHHHHHHHHhCCcEEE
Confidence 34457888999999999999776
No 192
>COG3962 Acetolactate synthase [Amino acid transport and metabolism]
Probab=47.59 E-value=31 Score=27.73 Aligned_cols=32 Identities=16% Similarity=0.315 Sum_probs=27.6
Q ss_pred cCCHHHHHHHHHHHHhCCCcEEEEcCCCCCCC
Q psy4717 36 TESTEDVEKVVQVAHDHNLVIIPFGGGTNVTG 67 (90)
Q Consensus 36 P~s~~~v~~vv~~a~~~~i~v~~~G~G~n~~~ 67 (90)
|-+..|++++++..+..+-|+++.|||--+++
T Consensus 213 ~Pd~~eL~~A~~lik~ak~PlIvaGGGv~YS~ 244 (617)
T COG3962 213 PPDERELADAAALIKSAKKPLIVAGGGVLYSG 244 (617)
T ss_pred CCCHHHHHHHHHHHHhcCCCEEEecCceeech
Confidence 45778999999999999999999999976653
No 193
>cd08173 Gro1PDH Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH, EC 1.1.1.261) plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids. It catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. The activity is zinc-dependent. One characteristic feature of archaea is that their cellular membrane has an ether linkage between the glycerol backbone and the hydrocarbon residues. The polar lipids of the members of Archaea consist of di- and tetraethers of glycerol with isoprenoid alcohols bound at the sn-2 and sn-3 positions of the glycerol moiety. The archaeal polar lipids have the enantiomeric configuration of a glycerophosph
Probab=47.58 E-value=27 Score=25.60 Aligned_cols=28 Identities=39% Similarity=0.533 Sum_probs=22.9
Q ss_pred CHHHHHHHHHHHHhCCCc-EEEEcCCCCC
Q psy4717 38 STEDVEKVVQVAHDHNLV-IIPFGGGTNV 65 (90)
Q Consensus 38 s~~~v~~vv~~a~~~~i~-v~~~G~G~n~ 65 (90)
+.+.|.++++.+++.+.. ++.+|||+-+
T Consensus 63 ~~~~v~~~~~~~~~~~~d~iIaiGGGs~~ 91 (339)
T cd08173 63 TYEEVEKVESSARDIGADFVIGVGGGRVI 91 (339)
T ss_pred CHHHHHHHHHHhhhcCCCEEEEeCCchHH
Confidence 789999999999988775 5559999854
No 194
>cd04509 PBP1_ABC_transporter_GCPR_C_like Family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. This CD includes members of the family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. The family C GPCR includes glutamate/glycine-gated ion channels such as the NMDA receptor, G-protein-coupled receptors, metabotropic glutamate, GABA-B, calcium sensing, phermone receptors, and atrial natriuretic peptide-guanylate cyclase receptors. The glutamate receptors that form cation-selective ion channels, iGluR, can be classified into three different subgroups according to their binding-affinity for the agonists NMDA (N-methyl-D-asparate), AMPA (alpha-amino-3-dihydro-5-methyl-3-oxo-4-isoxazolepropionic acid), and kainate. L-glutamate is a major neurotransmitter in the brain of vertebrates and acts th
Probab=47.33 E-value=40 Score=22.63 Aligned_cols=36 Identities=19% Similarity=0.115 Sum_probs=29.4
Q ss_pred CccEEEEcCCHHHHHHHHHHHHhCCCcEEEEcCCCC
Q psy4717 29 GTRYWCITESTEDVEKVVQVAHDHNLVIIPFGGGTN 64 (90)
Q Consensus 29 ~p~~vv~P~s~~~v~~vv~~a~~~~i~v~~~G~G~n 64 (90)
++++++-|.+......+..++++.++|++..+....
T Consensus 67 ~v~~iig~~~~~~~~~~~~~~~~~~iP~i~~~~~~~ 102 (299)
T cd04509 67 GVDALVGPVSSGVALAVAPVAEALKIPLISPGATAP 102 (299)
T ss_pred CceEEEcCCCcHHHHHHHHHHhhCCceEEeccCCCc
Confidence 577888888877777888889999999999876554
No 195
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=47.25 E-value=60 Score=25.87 Aligned_cols=28 Identities=11% Similarity=0.343 Sum_probs=23.9
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEcCCCCC
Q psy4717 38 STEDVEKVVQVAHDHNLVIIPFGGGTNV 65 (90)
Q Consensus 38 s~~~v~~vv~~a~~~~i~v~~~G~G~n~ 65 (90)
+.++|.+++++.++.+-|++..|+|-..
T Consensus 210 ~~~~v~~~~~~L~~AkrPvI~~G~g~~~ 237 (616)
T PRK07418 210 NPRQINAALKLIEEAERPLLYVGGGAIS 237 (616)
T ss_pred CHHHHHHHHHHHHhCCCCEEEECCCcCc
Confidence 5678999999999989999999998753
No 196
>PF14907 NTP_transf_5: Uncharacterised nucleotidyltransferase
Probab=47.19 E-value=28 Score=23.80 Aligned_cols=24 Identities=8% Similarity=0.389 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHhCCCcEEEEcCCC
Q psy4717 40 EDVEKVVQVAHDHNLVIIPFGGGT 63 (90)
Q Consensus 40 ~~v~~vv~~a~~~~i~v~~~G~G~ 63 (90)
.++.++++.++++||+++++.|-.
T Consensus 58 ~~~~~i~~~l~~~gI~~~~lKG~~ 81 (249)
T PF14907_consen 58 AELQEILAALNANGIPVILLKGAA 81 (249)
T ss_pred HHHHHHHHHHHHcCCCEEEEchHH
Confidence 578889999999999999987643
No 197
>PLN02834 3-dehydroquinate synthase
Probab=47.07 E-value=39 Score=26.09 Aligned_cols=29 Identities=28% Similarity=0.436 Sum_probs=24.3
Q ss_pred CCHHHHHHHHHHHHhCCC----cEEEEcCCCCC
Q psy4717 37 ESTEDVEKVVQVAHDHNL----VIIPFGGGTNV 65 (90)
Q Consensus 37 ~s~~~v~~vv~~a~~~~i----~v~~~G~G~n~ 65 (90)
.+.+.+.++++.+.++++ -++.+|||+-.
T Consensus 144 ksl~~v~~~~~~l~~~~~dr~~~VIAiGGGsv~ 176 (433)
T PLN02834 144 KDMETLMKVFDKALESRLDRRCTFVALGGGVIG 176 (433)
T ss_pred CCHHHHHHHHHHHHhcCCCcCcEEEEECChHHH
Confidence 478999999999998876 48889999744
No 198
>PF12427 DUF3665: Branched-chain amino acid aminotransferase ; InterPro: IPR024614 This uncharacterised domain is found in the N-terminal region of branched-chain amino acid aminotransferase II proteins in Corynebacterium. It is typically between 23 and 35 amino acids in length and contains a conserved TRT sequence motif.
Probab=46.97 E-value=18 Score=16.57 Aligned_cols=12 Identities=17% Similarity=0.332 Sum_probs=10.1
Q ss_pred EcCCHHHHHHHH
Q psy4717 35 ITESTEDVEKVV 46 (90)
Q Consensus 35 ~P~s~~~v~~vv 46 (90)
.|.|++++.+++
T Consensus 11 nPTs~~~L~eIL 22 (23)
T PF12427_consen 11 NPTSPERLKEIL 22 (23)
T ss_pred CCCCHHHHHHHh
Confidence 488999999886
No 199
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=46.97 E-value=23 Score=27.26 Aligned_cols=20 Identities=20% Similarity=0.527 Sum_probs=18.1
Q ss_pred CHHHHHHHHHHHHhCCCcEE
Q psy4717 38 STEDVEKVVQVAHDHNLVII 57 (90)
Q Consensus 38 s~~~v~~vv~~a~~~~i~v~ 57 (90)
|.+|+.++.++|.+|++.++
T Consensus 176 t~eeL~~i~elc~kh~v~VI 195 (388)
T COG1168 176 TKEELRKIAELCLRHGVRVI 195 (388)
T ss_pred cHHHHHHHHHHHHHcCCEEE
Confidence 67999999999999998765
No 200
>PF07287 DUF1446: Protein of unknown function (DUF1446); InterPro: IPR010839 This family consists of several bacterial and plant proteins of around 400 residues in length. The function of this family is unknown.
Probab=46.87 E-value=33 Score=26.08 Aligned_cols=33 Identities=18% Similarity=0.349 Sum_probs=27.3
Q ss_pred EEcCCHHHHHHHHHHHHhCCCcEEEEcCCCCCC
Q psy4717 34 CITESTEDVEKVVQVAHDHNLVIIPFGGGTNVT 66 (90)
Q Consensus 34 v~P~s~~~v~~vv~~a~~~~i~v~~~G~G~n~~ 66 (90)
..|.=.++++.++..|.++++|++.=+||.|..
T Consensus 52 Y~~~~~~~L~~~L~~~~~~gIkvI~NaGg~np~ 84 (362)
T PF07287_consen 52 YAPDFVRDLRPLLPAAAEKGIKVITNAGGLNPA 84 (362)
T ss_pred chHHHHHHHHHHHHHHHhCCCCEEEeCCCCCHH
Confidence 444446899999999999999999988888754
No 201
>KOG0369|consensus
Probab=46.80 E-value=21 Score=30.13 Aligned_cols=25 Identities=16% Similarity=0.206 Sum_probs=21.4
Q ss_pred EcCCHHHHHHHHHHHHhCCCcEEEE
Q psy4717 35 ITESTEDVEKVVQVAHDHNLVIIPF 59 (90)
Q Consensus 35 ~P~s~~~v~~vv~~a~~~~i~v~~~ 59 (90)
.|.-++.+.+++++|+++|.|++..
T Consensus 166 TpgPitt~~EA~eF~k~yG~PvI~K 190 (1176)
T KOG0369|consen 166 TPGPITTVEEALEFVKEYGLPVIIK 190 (1176)
T ss_pred CCCCcccHHHHHHHHHhcCCcEEEe
Confidence 4556788899999999999999875
No 202
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=46.79 E-value=27 Score=25.74 Aligned_cols=28 Identities=25% Similarity=0.444 Sum_probs=23.0
Q ss_pred CHHHHHHHHHHHHhCCCc-EEEEcCCCCC
Q psy4717 38 STEDVEKVVQVAHDHNLV-IIPFGGGTNV 65 (90)
Q Consensus 38 s~~~v~~vv~~a~~~~i~-v~~~G~G~n~ 65 (90)
+.+.|.++++.+++.+.. ++.+|||+.+
T Consensus 63 ~~~~v~~~~~~~~~~~~d~iiavGGGs~~ 91 (345)
T cd08171 63 TYENVERLKKNPAVQEADMIFAVGGGKAI 91 (345)
T ss_pred CHHHHHHHHHHHhhcCCCEEEEeCCcHHH
Confidence 788899999999998874 6669999855
No 203
>PF07071 DUF1341: Protein of unknown function (DUF1341); InterPro: IPR010763 Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.; PDB: 3NZR_D 3LM7_A 3M0Z_B 3M6Y_A 3N73_A 3MUX_A.
Probab=46.77 E-value=34 Score=24.31 Aligned_cols=25 Identities=20% Similarity=0.473 Sum_probs=21.3
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEEcC
Q psy4717 37 ESTEDVEKVVQVAHDHNLVIIPFGG 61 (90)
Q Consensus 37 ~s~~~v~~vv~~a~~~~i~v~~~G~ 61 (90)
++.+|++.+.+.|.++++++=|-||
T Consensus 161 ~~leE~~avAkA~a~~g~~lEPTGG 185 (218)
T PF07071_consen 161 KHLEELKAVAKACARNGFTLEPTGG 185 (218)
T ss_dssp TTHHHHHHHHHHHHHCT-EEEEBSS
T ss_pred ccHHHHHHHHHHHHHcCceeCCcCC
Confidence 6789999999999999999988665
No 204
>cd02429 PTH2_like Peptidyl-tRNA hydrolase, type 2 (PTH2)_like . Peptidyl-tRNA hydrolase activity releases tRNA from the premature translation termination product peptidyl-tRNA. Two structurally different enzymes have been reported to encode such activity, Pth present in bacteria and eukaryotes and Pth2 present in archaea and eukaryotes. There is no functional information for this eukaryote-specific subgroup.
Probab=46.63 E-value=63 Score=20.61 Aligned_cols=31 Identities=0% Similarity=-0.050 Sum_probs=28.6
Q ss_pred CccEEEEcCCHHHHHHHHHHHHhCCCcEEEE
Q psy4717 29 GTRYWCITESTEDVEKVVQVAHDHNLVIIPF 59 (90)
Q Consensus 29 ~p~~vv~P~s~~~v~~vv~~a~~~~i~v~~~ 59 (90)
....|+...+++|+.++-+-+.+.+++...+
T Consensus 55 ~~KVVLkv~~e~eL~~L~~~a~~~gi~~~l~ 85 (116)
T cd02429 55 MHKVVLEVPDEAALKNLSSKLTENSIKHKLW 85 (116)
T ss_pred CceEEEEeCCHHHHHHHHHHHHHcCCCeEEE
Confidence 4899999999999999999999999997775
No 205
>PRK08659 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Validated
Probab=46.62 E-value=41 Score=25.43 Aligned_cols=34 Identities=9% Similarity=0.019 Sum_probs=28.2
Q ss_pred ccEEEEcCCHHHHHH----HHHHHHhCCCcEEEEcCCC
Q psy4717 30 TRYWCITESTEDVEK----VVQVAHDHNLVIIPFGGGT 63 (90)
Q Consensus 30 p~~vv~P~s~~~v~~----vv~~a~~~~i~v~~~G~G~ 63 (90)
|..++.|.|.+|.-. +.+++.+.++|++++.-|.
T Consensus 135 ~~ivl~p~~~QEa~d~~~~Af~lAE~~~~PViv~~D~~ 172 (376)
T PRK08659 135 PIIALSPSSVQECFDLTIRAFNLAEKYRTPVIVLADEV 172 (376)
T ss_pred CcEEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEechH
Confidence 778999999999854 5566778999999998873
No 206
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=46.53 E-value=35 Score=24.86 Aligned_cols=35 Identities=11% Similarity=0.414 Sum_probs=27.1
Q ss_pred ccEEEEc-CCHHHHHHHHHHHHhCCCc-----EEEEcCCCC
Q psy4717 30 TRYWCIT-ESTEDVEKVVQVAHDHNLV-----IIPFGGGTN 64 (90)
Q Consensus 30 p~~vv~P-~s~~~v~~vv~~a~~~~i~-----v~~~G~G~n 64 (90)
-..++.+ .+.+|+.++++++.+.++. ++|.|++..
T Consensus 158 in~vv~~g~n~~ei~~l~~~~~~~gv~~~~ie~mp~~~~~~ 198 (334)
T TIGR02666 158 LNTVVMRGVNDDEIVDLAEFAKERGVTLRFIELMPLGEGNG 198 (334)
T ss_pred EEEEEeCCCCHHHHHHHHHHHHhcCCeEEEEeccCCCCCcc
Confidence 3446666 6899999999999999975 667777644
No 207
>PRK07714 hypothetical protein; Provisional
Probab=46.52 E-value=38 Score=20.62 Aligned_cols=33 Identities=9% Similarity=0.096 Sum_probs=26.2
Q ss_pred CccEEEEcCCHHH--HHHHHHHHHhCCCcEEEEcC
Q psy4717 29 GTRYWCITESTED--VEKVVQVAHDHNLVIIPFGG 61 (90)
Q Consensus 29 ~p~~vv~P~s~~~--v~~vv~~a~~~~i~v~~~G~ 61 (90)
.+..|+.+++..+ ..++..+|..+++|++-.+.
T Consensus 34 ~~~lViiA~D~s~~~~~ki~~~~~~~~vp~~~~~s 68 (100)
T PRK07714 34 KAKLVLLSEDASVNTTKKITDKCTYYNVPMRKVEN 68 (100)
T ss_pred CceEEEEeCCCCHHHHHHHHHHHHhcCCCEEEeCC
Confidence 3677888876644 78899999999999987654
No 208
>PRK03604 moaC bifunctional molybdenum cofactor biosynthesis protein MoaC/MogA; Provisional
Probab=46.11 E-value=58 Score=24.23 Aligned_cols=36 Identities=19% Similarity=0.300 Sum_probs=29.6
Q ss_pred cEEEEcCCHHHHHHHHHHHHhCCCcEEEEcCCCCCC
Q psy4717 31 RYWCITESTEDVEKVVQVAHDHNLVIIPFGGGTNVT 66 (90)
Q Consensus 31 ~~vv~P~s~~~v~~vv~~a~~~~i~v~~~G~G~n~~ 66 (90)
.+-+.|.+.+++++.++-+...+..+++..||++..
T Consensus 193 ~~~iVpDD~~~I~~al~~a~~~~~DlIITTGGtg~g 228 (312)
T PRK03604 193 HYTIIPDEPAEIAAAVAAWIAEGYALIITTGGTGLG 228 (312)
T ss_pred EEEEcCCCHHHHHHHHHHhhhCCCCEEEECCCCCCC
Confidence 345679999999999987755568899999999885
No 209
>cd08184 Fe-ADH3 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the iron-containing alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron or zinc ions. Members of this family are mainly found in bacteria.
Probab=46.09 E-value=30 Score=25.81 Aligned_cols=28 Identities=18% Similarity=0.449 Sum_probs=22.0
Q ss_pred CHHHHHHHHHHHHhC---CCc-EEEEcCCCCC
Q psy4717 38 STEDVEKVVQVAHDH---NLV-IIPFGGGTNV 65 (90)
Q Consensus 38 s~~~v~~vv~~a~~~---~i~-v~~~G~G~n~ 65 (90)
+.++|.++++.++++ +.- ++.+||||.+
T Consensus 63 t~~~v~~~~~~~~~~~~~~~D~IIaiGGGS~i 94 (347)
T cd08184 63 KTDQIDALTAQVKSFDGKLPCAIVGIGGGSTL 94 (347)
T ss_pred CHHHHHHHHHHHHhhCCCCCCEEEEeCCcHHH
Confidence 557899999999987 664 5669999865
No 210
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=46.09 E-value=38 Score=27.72 Aligned_cols=36 Identities=17% Similarity=0.260 Sum_probs=28.5
Q ss_pred c-cEEEEcCCHHHHHHHHHHHHhCC-CcEE---EEcCCCCC
Q psy4717 30 T-RYWCITESTEDVEKVVQVAHDHN-LVII---PFGGGTNV 65 (90)
Q Consensus 30 p-~~vv~P~s~~~v~~vv~~a~~~~-i~v~---~~G~G~n~ 65 (90)
| -.+..|++++|+++++.++..++ -|+. |+|.|.+.
T Consensus 441 Pnmvi~aP~de~el~~ml~ta~~~~~gP~AiRyPrg~~~~~ 481 (627)
T COG1154 441 PNMVIMAPRDEEELRQMLYTALAQDDGPVAIRYPRGNGVGV 481 (627)
T ss_pred CCcEEecCCCHHHHHHHHHHHHhcCCCCeEEEecCCCCCCC
Confidence 5 45678999999999999999988 5875 45766554
No 211
>KOG0258|consensus
Probab=46.00 E-value=49 Score=26.02 Aligned_cols=32 Identities=19% Similarity=0.227 Sum_probs=24.3
Q ss_pred eecCccEEEEcCC-------HHHHHHHHHHHHhCCCcEE
Q psy4717 26 IFIGTRYWCITES-------TEDVEKVVQVAHDHNLVII 57 (90)
Q Consensus 26 ~~~~p~~vv~P~s-------~~~v~~vv~~a~~~~i~v~ 57 (90)
+..++-+|+-|.+ .+-+++++++|.++++-++
T Consensus 214 i~~r~lvvINPGNPTGqvls~e~ie~i~~fa~~~~l~ll 252 (475)
T KOG0258|consen 214 INPRALVVINPGNPTGQVLSEENIEGIICFAAEEGLVLL 252 (475)
T ss_pred CCceEEEEECCCCccchhhcHHHHHHHHHHHHHcCeEEe
Confidence 4456677777764 5889999999999987654
No 212
>PRK09627 oorA 2-oxoglutarate-acceptor oxidoreductase subunit OorA; Reviewed
Probab=45.98 E-value=39 Score=25.61 Aligned_cols=33 Identities=9% Similarity=-0.014 Sum_probs=28.2
Q ss_pred ccEEEEcCCHHHHH----HHHHHHHhCCCcEEEEcCC
Q psy4717 30 TRYWCITESTEDVE----KVVQVAHDHNLVIIPFGGG 62 (90)
Q Consensus 30 p~~vv~P~s~~~v~----~vv~~a~~~~i~v~~~G~G 62 (90)
+..++.|.|.+|.- .+.+++.+.++|++++.-|
T Consensus 134 ~~ivl~p~~~qEa~d~t~~Af~lAE~~~~PViv~~D~ 170 (375)
T PRK09627 134 KSIALAPGSLEEAYTETVRAFNLAERFMTPVFLLLDE 170 (375)
T ss_pred CcEEEeCCCHHHHHHHHHHHHHHHHHHcCceEEecch
Confidence 67799999999874 5567788899999999887
No 213
>cd06322 PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=45.97 E-value=54 Score=22.10 Aligned_cols=33 Identities=6% Similarity=0.106 Sum_probs=25.8
Q ss_pred CccEEEE-cCCHHHHHHHHHHHHhCCCcEEEEcC
Q psy4717 29 GTRYWCI-TESTEDVEKVVQVAHDHNLVIIPFGG 61 (90)
Q Consensus 29 ~p~~vv~-P~s~~~v~~vv~~a~~~~i~v~~~G~ 61 (90)
.++.++. |.+.+...+.++.+.+.++|++.++.
T Consensus 55 ~vdgiii~~~~~~~~~~~~~~~~~~~ipvV~~~~ 88 (267)
T cd06322 55 KVDAIVLSPVDSKGIRAAIAKAKKAGIPVITVDI 88 (267)
T ss_pred CCCEEEEcCCChhhhHHHHHHHHHCCCCEEEEcc
Confidence 4777766 76666677788888899999999864
No 214
>PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the C-terminal TPP binding domain of TPP enzymes.; GO: 0003824 catalytic activity, 0030976 thiamine pyrophosphate binding; PDB: 2WVA_V 1ZPD_F 2WVG_B 2WVH_B 3OE1_D 2NXW_A 2Q5L_B 2Q5Q_B 2Q5J_A 2Q5O_A ....
Probab=45.66 E-value=51 Score=20.99 Aligned_cols=24 Identities=17% Similarity=0.187 Sum_probs=18.4
Q ss_pred EcCCHHHHHHHHHHHHhCCCcEEE
Q psy4717 35 ITESTEDVEKVVQVAHDHNLVIIP 58 (90)
Q Consensus 35 ~P~s~~~v~~vv~~a~~~~i~v~~ 58 (90)
.+.+.+|+.++++.+.+.+-|.++
T Consensus 128 ~~~~~~el~~al~~a~~~~gp~vI 151 (153)
T PF02775_consen 128 TTPDPEELEEALREALESGGPAVI 151 (153)
T ss_dssp SCHSHHHHHHHHHHHHHSSSEEEE
T ss_pred ccCCHHHHHHHHHHHHhCCCcEEE
Confidence 344459999999999988777654
No 215
>PRK02936 argD acetylornithine aminotransferase; Provisional
Probab=45.52 E-value=28 Score=25.41 Aligned_cols=23 Identities=9% Similarity=0.166 Sum_probs=20.6
Q ss_pred cCCHHHHHHHHHHHHhCCCcEEE
Q psy4717 36 TESTEDVEKVVQVAHDHNLVIIP 58 (90)
Q Consensus 36 P~s~~~v~~vv~~a~~~~i~v~~ 58 (90)
|.+.+.++++.++|+++++.++.
T Consensus 184 ~~~~~~l~~l~~l~~~~~~~lI~ 206 (377)
T PRK02936 184 PADPAFLQEVQTLCKKFGALLII 206 (377)
T ss_pred cCCHHHHHHHHHHHHHcCCEEEE
Confidence 67889999999999999998765
No 216
>PF14542 Acetyltransf_CG: GCN5-related N-acetyl-transferase; PDB: 2H5M_A 2Q44_A 1XMT_A 2Q4Y_A 2IL4_A 2EVN_A 1R57_A.
Probab=45.37 E-value=28 Score=20.24 Aligned_cols=19 Identities=26% Similarity=0.448 Sum_probs=15.5
Q ss_pred HHHHHHHHHHhCCCcEEEE
Q psy4717 41 DVEKVVQVAHDHNLVIIPF 59 (90)
Q Consensus 41 ~v~~vv~~a~~~~i~v~~~ 59 (90)
=+.+++++|++++..+.|.
T Consensus 43 L~~~~l~~a~~~~~kv~p~ 61 (78)
T PF14542_consen 43 LVEAALDYARENGLKVVPT 61 (78)
T ss_dssp HHHHHHHHHHHTT-EEEET
T ss_pred HHHHHHHHHHHCCCEEEEE
Confidence 4688999999999999884
No 217
>PRK15452 putative protease; Provisional
Probab=45.35 E-value=48 Score=25.80 Aligned_cols=24 Identities=13% Similarity=0.032 Sum_probs=20.4
Q ss_pred cCCHHHHHHHHHHHHhCCCcEEEE
Q psy4717 36 TESTEDVEKVVQVAHDHNLVIIPF 59 (90)
Q Consensus 36 P~s~~~v~~vv~~a~~~~i~v~~~ 59 (90)
+=+.+|+.+++++|+++|..+++.
T Consensus 42 ~f~~edl~eav~~ah~~g~kvyvt 65 (443)
T PRK15452 42 EFNHENLALGINEAHALGKKFYVV 65 (443)
T ss_pred CCCHHHHHHHHHHHHHcCCEEEEE
Confidence 346799999999999999988774
No 218
>cd06330 PBP1_Arsenic_SBP_like Periplasmic solute-binding domain of active transport proteins. Periplasmic solute-binding domain of active transport proteins found in bacteria and Archaea that is predicted to be involved in the efflux of toxic compounds. Members of this subgroup include proteins from Herminiimonas arsenicoxydans, which is resistant to arsenic and various heavy metals such as cadmium and zinc. Moreover, they show significant sequence similarity to the cluster of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa.
Probab=45.30 E-value=45 Score=23.71 Aligned_cols=36 Identities=22% Similarity=0.146 Sum_probs=30.9
Q ss_pred CccEEEEcCCHHHHHHHHHHHHhCCCcEEEEcCCCC
Q psy4717 29 GTRYWCITESTEDVEKVVQVAHDHNLVIIPFGGGTN 64 (90)
Q Consensus 29 ~p~~vv~P~s~~~v~~vv~~a~~~~i~v~~~G~G~n 64 (90)
++.+|+-|-+..+...+...+.+.++|++..+.++.
T Consensus 67 ~v~aiig~~~s~~~~~~~~~~~~~~ip~i~~~s~~~ 102 (346)
T cd06330 67 GVDMLIGLISSGVALAVAPVAEELKVFFIATDPGTP 102 (346)
T ss_pred CCcEEEcccchHHHHHHHHHHHHcCCeEEEcCCCCc
Confidence 578889888999999999999999999988766654
No 219
>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of ethanol to acetaldehyde with the concomitant reduction of NAD. Currently three, structurally and catalytically, different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Iron-containing ADH's have been found in yeast (gene ADH4) [], as well as in Zymomonas mobilis (gene adhB) []. These two iron-containing ADH's are closely related to the following enzymes: Escherichia coli propanediol oxidoreductase (1.1.1.77 from EC) (gene fucO) [], an enzyme involved in the metabolism of fucose and which also seems to contain ferrous ion(s). Clostridium acetobutylicum NADPH- and NADH-dependent butanol dehydrogenases (1.1.1 from EC) (genes adh1, bdhA and bdhB) [], an enzyme which has activity using butanol and ethanol as substrates. E. coli adhE [], an iron-dependent enzyme which harbor three different activities: alcohol dehydrogenase, acetaldehyde dehydrogenase (acetylating) (1.2.1.10 from EC) and pyruvate-formate-lyase deactivase. Bacterial glycerol dehydrogenase (1.1.1.6 from EC) (gene gldA or dhaD) []. Clostridium kluyveri NAD-dependent 4-hydroxybutyrate dehydrogenase (4hbd) (1.1.1.61 from EC). Citrobacter freundii and Klebsiella pneumoniae 1,3-propanediol dehydrogenase (1.1.1.202 from EC) (gene dhaT). Bacillus methanolicus NAD-dependent methanol dehydrogenase (1.1.1.244 from EC) []. E. coli and Salmonella typhimurium ethanolamine utilization protein eutG. E. coli hypothetical protein yiaY. ; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1RRM_A 2BL4_A 2BI4_A 3BFJ_R 1KQ3_A 1JQ5_A 1JPU_A 1JQA_A 3JZD_A 3UHJ_A ....
Probab=45.27 E-value=21 Score=26.42 Aligned_cols=31 Identities=29% Similarity=0.498 Sum_probs=24.9
Q ss_pred EcCCHHHHHHHHHHHHhCCC-cEEEEcCCCCC
Q psy4717 35 ITESTEDVEKVVQVAHDHNL-VIIPFGGGTNV 65 (90)
Q Consensus 35 ~P~s~~~v~~vv~~a~~~~i-~v~~~G~G~n~ 65 (90)
...+.++|.++++.+++.+. -++.+||||-+
T Consensus 60 ~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS~~ 91 (366)
T PF00465_consen 60 PNPTLEDVDEAAEQARKFGADCIIAIGGGSVM 91 (366)
T ss_dssp SS-BHHHHHHHHHHHHHTTSSEEEEEESHHHH
T ss_pred CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcC
Confidence 34567999999999999987 58889999844
No 220
>PTZ00182 3-methyl-2-oxobutanate dehydrogenase; Provisional
Probab=45.23 E-value=45 Score=25.03 Aligned_cols=29 Identities=14% Similarity=0.127 Sum_probs=25.5
Q ss_pred cEEEEcCCHHHHHHHHHHHHhCCCcEEEE
Q psy4717 31 RYWCITESTEDVEKVVQVAHDHNLVIIPF 59 (90)
Q Consensus 31 ~~vv~P~s~~~v~~vv~~a~~~~i~v~~~ 59 (90)
-.|+.|.+.+|+..++++|-++.-|++++
T Consensus 174 ~~V~~Psd~~e~~~~l~~a~~~~~P~~i~ 202 (355)
T PTZ00182 174 LKVVAPSDPEDAKGLLKAAIRDPNPVVFF 202 (355)
T ss_pred CEEEeeCCHHHHHHHHHHHHhCCCcEEEE
Confidence 36889999999999999999888888774
No 221
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=45.02 E-value=48 Score=22.79 Aligned_cols=28 Identities=21% Similarity=0.395 Sum_probs=24.0
Q ss_pred cCCHHHHHHHHHHHHhCCCcEEEEcCCC
Q psy4717 36 TESTEDVEKVVQVAHDHNLVIIPFGGGT 63 (90)
Q Consensus 36 P~s~~~v~~vv~~a~~~~i~v~~~G~G~ 63 (90)
-...+++.+++++|++.|++++.+.+..
T Consensus 119 SG~s~~v~~a~~~Ak~~G~~vI~IT~~~ 146 (196)
T PRK10886 119 RGNSRDIVKAVEAAVTRDMTIVALTGYD 146 (196)
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 3457899999999999999999998744
No 222
>PRK00843 egsA NAD(P)-dependent glycerol-1-phosphate dehydrogenase; Reviewed
Probab=44.81 E-value=32 Score=25.43 Aligned_cols=30 Identities=40% Similarity=0.555 Sum_probs=23.2
Q ss_pred cCCHHHHHHHHHHHHhCCCc-EEEEcCCCCC
Q psy4717 36 TESTEDVEKVVQVAHDHNLV-IIPFGGGTNV 65 (90)
Q Consensus 36 P~s~~~v~~vv~~a~~~~i~-v~~~G~G~n~ 65 (90)
-.+.+.+.++++.+++.+.. ++.+|||+-.
T Consensus 70 ~~t~~~v~~~~~~~~~~~~d~IIaiGGGsv~ 100 (350)
T PRK00843 70 EATMEEVEKVEEKAKDVNAGFLIGVGGGKVI 100 (350)
T ss_pred CCCHHHHHHHHHHhhccCCCEEEEeCCchHH
Confidence 46788899999999987764 5569998643
No 223
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=44.78 E-value=31 Score=25.82 Aligned_cols=28 Identities=21% Similarity=0.521 Sum_probs=23.3
Q ss_pred CHHHHHHHHHHHHhCCCc-EEEEcCCCCC
Q psy4717 38 STEDVEKVVQVAHDHNLV-IIPFGGGTNV 65 (90)
Q Consensus 38 s~~~v~~vv~~a~~~~i~-v~~~G~G~n~ 65 (90)
+.+.|.++++.+++.+.- ++.+||||.+
T Consensus 71 ~~~~v~~~~~~~~~~~~D~IIaiGGGS~i 99 (382)
T cd08187 71 RLETVREGIELCKEEKVDFILAVGGGSVI 99 (382)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCChHHH
Confidence 568999999999998875 5559999966
No 224
>TIGR02634 xylF D-xylose ABC transporter, substrate-binding protein. Members of this family are periplasmic (when in Gram-negative bacteria) binding proteins for D-xylose import by a high-affinity ATP-binding cassette (ABC) transporter.
Probab=44.65 E-value=53 Score=23.19 Aligned_cols=33 Identities=15% Similarity=0.246 Sum_probs=25.3
Q ss_pred ccEE-EEcCCHHHHHHHHHHHHhCCCcEEEEcCC
Q psy4717 30 TRYW-CITESTEDVEKVVQVAHDHNLVIIPFGGG 62 (90)
Q Consensus 30 p~~v-v~P~s~~~v~~vv~~a~~~~i~v~~~G~G 62 (90)
++.+ +.|.+.......++.+.+.++|++.++..
T Consensus 55 vDgIIi~~~~~~~~~~~l~~~~~~~iPvV~~d~~ 88 (302)
T TIGR02634 55 VDVLVIIPQNGQVLSNAVQEAKDEGIKVVAYDRL 88 (302)
T ss_pred CCEEEEeCCChhHHHHHHHHHHHCCCeEEEecCc
Confidence 6544 44666666788899999999999998754
No 225
>PRK13936 phosphoheptose isomerase; Provisional
Probab=44.52 E-value=50 Score=22.40 Aligned_cols=29 Identities=17% Similarity=0.453 Sum_probs=24.2
Q ss_pred EcCCHHHHHHHHHHHHhCCCcEEEEcCCC
Q psy4717 35 ITESTEDVEKVVQVAHDHNLVIIPFGGGT 63 (90)
Q Consensus 35 ~P~s~~~v~~vv~~a~~~~i~v~~~G~G~ 63 (90)
......++.++++.|++.|++++.+.+..
T Consensus 120 ~sG~t~~~~~~~~~ak~~g~~iI~IT~~~ 148 (197)
T PRK13936 120 TSGNSANVIQAIQAAHEREMHVVALTGRD 148 (197)
T ss_pred CCCCcHHHHHHHHHHHHCCCeEEEEECCC
Confidence 34467899999999999999999987743
No 226
>TIGR01229 rocF_arginase arginase. This model helps resolve arginases from known and putative agmatinases, formiminoglutamases, and other related proteins of unknown specifity. The pathway from arginine to the polyamine putrescine may procede by hydrolysis to remove urea (arginase) followed by decarboxylation (ornithine decarboxylase), or by decarboxylation first (arginine decarboxylase) followed by removal of urea (agmatinase).
Probab=44.50 E-value=30 Score=25.11 Aligned_cols=30 Identities=13% Similarity=0.215 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHhCCCcEEEEcCCCCCCCCc
Q psy4717 40 EDVEKVVQVAHDHNLVIIPFGGGTNVTGAV 69 (90)
Q Consensus 40 ~~v~~vv~~a~~~~i~v~~~G~G~n~~~~~ 69 (90)
+.+++.++.+-+.+.-.+.+||+|+++.+.
T Consensus 70 ~~i~~~v~~~~~~g~~pi~lGGdHsi~~~~ 99 (300)
T TIGR01229 70 EQLAPKVYEVFEEGRFPLVLGGDHSIAIGT 99 (300)
T ss_pred HHHHHHHHHHHhCCCeeEEEcCcchhhhhh
Confidence 444666777777777777799999987554
No 227
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=44.39 E-value=49 Score=21.74 Aligned_cols=29 Identities=10% Similarity=0.083 Sum_probs=24.2
Q ss_pred EcCCHHHHHHHHHHHHhCCCcEEEEcCCC
Q psy4717 35 ITESTEDVEKVVQVAHDHNLVIIPFGGGT 63 (90)
Q Consensus 35 ~P~s~~~v~~vv~~a~~~~i~v~~~G~G~ 63 (90)
......++.++++.|++.|++++.+.+-.
T Consensus 84 ~sG~t~~~i~~~~~ak~~g~~iI~IT~~~ 112 (179)
T cd05005 84 GSGETSSVVNAAEKAKKAGAKVVLITSNP 112 (179)
T ss_pred CCCCcHHHHHHHHHHHHCCCeEEEEECCC
Confidence 44567999999999999999999887633
No 228
>TIGR00355 purH phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase. Involved in purine ribonucleotide biosynthesis. The IMP cyclohydrolase activity is in the N-terminal region.
Probab=44.20 E-value=29 Score=27.66 Aligned_cols=35 Identities=17% Similarity=0.189 Sum_probs=24.8
Q ss_pred CccEEEEcCCHHHHHHHHHHHHhCCCcEEEEcCCC
Q psy4717 29 GTRYWCITESTEDVEKVVQVAHDHNLVIIPFGGGT 63 (90)
Q Consensus 29 ~p~~vv~P~s~~~v~~vv~~a~~~~i~v~~~G~G~ 63 (90)
+..+|++|..-=-=+++++.|+++|+.++.-|--|
T Consensus 474 Gi~aIiQPGGSiRD~evI~aa~e~giaMvfTg~Rh 508 (511)
T TIGR00355 474 GITCIIQPGGSMRDEDSIWAADEHGIVMVFTGMRH 508 (511)
T ss_pred CCEEEEcCCCCCCcHHHHHHHHHhCCEEEECCCCC
Confidence 36778888654333678888899998888766544
No 229
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=44.15 E-value=94 Score=22.60 Aligned_cols=40 Identities=5% Similarity=0.013 Sum_probs=29.6
Q ss_pred eecCccEEEEcCCHHHHHHHHHHHHhCCCcEEEEcCCCCC
Q psy4717 26 IFIGTRYWCITESTEDVEKVVQVAHDHNLVIIPFGGGTNV 65 (90)
Q Consensus 26 ~~~~p~~vv~P~s~~~v~~vv~~a~~~~i~v~~~G~G~n~ 65 (90)
....|...-...+.+.+..+++.|.++|+|+...-|.+-.
T Consensus 130 ~~l~p~~~~~~~~~~~~~pi~~~a~~~gvpv~ihtG~~~~ 169 (293)
T COG2159 130 VKLHPVAQGFYPDDPRLYPIYEAAEELGVPVVIHTGAGPG 169 (293)
T ss_pred EEecccccCCCCCChHHHHHHHHHHHcCCCEEEEeCCCCC
Confidence 4455666665666666999999999999999996554433
No 230
>PRK14470 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=44.12 E-value=67 Score=24.01 Aligned_cols=64 Identities=9% Similarity=0.021 Sum_probs=40.4
Q ss_pred cchhHHHHHHHHhccCccccceeeecCccEEEEcCCHHHHHHHHHHH--HhCCCcEEEEc-CCCCCCC
Q psy4717 3 STEDVEKVVQVAHDHNLVVNHQAIFIGTRYWCITESTEDVEKVVQVA--HDHNLVIIPFG-GGTNVTG 67 (90)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~vv~P~s~~~v~~vv~~a--~~~~i~v~~~G-~G~n~~~ 67 (90)
|-++.+++++...+.....+.--|.. +..-+.|.+.+++.+..+.. +++|+++.++- .|..+.+
T Consensus 260 seeda~~La~llk~l~~~vnlI~~N~-~~~~~~~p~~~~i~~f~~~l~~~~~g~~~~~R~~~G~di~a 326 (336)
T PRK14470 260 GEEDAAALGRLLAGIPVRLNPIAVND-ATGRYRPPDEDEWNAFRDALARELPGTPVVRRYSGGQDEHA 326 (336)
T ss_pred CHHHHHHHHHHHhcCCCeEEEeccCC-CCCCccCCCHHHHHHHHHHHHHccCCeEEEEECCCCCChHh
Confidence 45677788886665532222111222 22257888889999999888 47888888875 3666643
No 231
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=44.03 E-value=52 Score=21.61 Aligned_cols=28 Identities=18% Similarity=0.362 Sum_probs=24.0
Q ss_pred cCCHHHHHHHHHHHHhCCCcEEEEcCCC
Q psy4717 36 TESTEDVEKVVQVAHDHNLVIIPFGGGT 63 (90)
Q Consensus 36 P~s~~~v~~vv~~a~~~~i~v~~~G~G~ 63 (90)
.....++.++++.|++.|.+++.+.+..
T Consensus 111 SG~t~~~i~~~~~ak~~Ga~vI~IT~~~ 138 (177)
T cd05006 111 SGNSPNVLKALEAAKERGMKTIALTGRD 138 (177)
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 4566899999999999999999997643
No 232
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=44.01 E-value=56 Score=23.71 Aligned_cols=35 Identities=14% Similarity=0.256 Sum_probs=30.8
Q ss_pred cEEEEcCCHHHHHHHHHHHHhCCCcEEEEcCCCCCC
Q psy4717 31 RYWCITESTEDVEKVVQVAHDHNLVIIPFGGGTNVT 66 (90)
Q Consensus 31 ~~vv~P~s~~~v~~vv~~a~~~~i~v~~~G~G~n~~ 66 (90)
...+.|.+.++|.+.++.+.+. ..+++.+||=+.+
T Consensus 39 ~~~~VgD~~~~I~~~l~~a~~r-~D~vI~tGGLGPT 73 (255)
T COG1058 39 RITTVGDNPDRIVEALREASER-ADVVITTGGLGPT 73 (255)
T ss_pred EEEecCCCHHHHHHHHHHHHhC-CCEEEECCCcCCC
Confidence 4568899999999999999998 9999999987764
No 233
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=43.90 E-value=82 Score=21.44 Aligned_cols=57 Identities=18% Similarity=0.194 Sum_probs=38.6
Q ss_pred CCcchhHHHHHHHHhccC--ccccceeeecCccEEEEcCCHHHHHHHHHHHHhCCCcEEEEcCCC
Q psy4717 1 MKSTEDVEKVVQVAHDHN--LVVNHQAIFIGTRYWCITESTEDVEKVVQVAHDHNLVIIPFGGGT 63 (90)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~p~~vv~P~s~~~v~~vv~~a~~~~i~v~~~G~G~ 63 (90)
|-|..||+.... +.+.= +- +......+--=+|.+.+.+..+-+.+.|+.+++-|.|-
T Consensus 9 MGS~SD~~~mk~-Aa~~L~~fg-----i~ye~~VvSAHRTPe~m~~ya~~a~~~g~~viIAgAGg 67 (162)
T COG0041 9 MGSKSDWDTMKK-AAEILEEFG-----VPYEVRVVSAHRTPEKMFEYAEEAEERGVKVIIAGAGG 67 (162)
T ss_pred ecCcchHHHHHH-HHHHHHHcC-----CCeEEEEEeccCCHHHHHHHHHHHHHCCCeEEEecCcc
Confidence 567888887755 32211 11 11224455556788999999999999999988887664
No 234
>PRK13772 formimidoylglutamase; Provisional
Probab=43.61 E-value=22 Score=26.05 Aligned_cols=31 Identities=19% Similarity=0.249 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHhCCCcEEEEcCCCCCCCCc
Q psy4717 39 TEDVEKVVQVAHDHNLVIIPFGGGTNVTGAV 69 (90)
Q Consensus 39 ~~~v~~vv~~a~~~~i~v~~~G~G~n~~~~~ 69 (90)
.+.+++.++...+.+.-.+.+||+|+++.+.
T Consensus 102 ~~~i~~~v~~~~~~g~~PivlGGdHsit~g~ 132 (314)
T PRK13772 102 QAALAEVVAEVLAAGARPLVLGGGHEVAWGT 132 (314)
T ss_pred HHHHHHHHHHHHHCCCEEEEEcCchHHHHhh
Confidence 3556666766666776667799999997665
No 235
>PRK01215 competence damage-inducible protein A; Provisional
Probab=43.58 E-value=68 Score=23.12 Aligned_cols=35 Identities=20% Similarity=0.267 Sum_probs=28.8
Q ss_pred cEEEEcCCHHHHHHHHHHHHhCCCcEEEEcCCCCCC
Q psy4717 31 RYWCITESTEDVEKVVQVAHDHNLVIIPFGGGTNVT 66 (90)
Q Consensus 31 ~~vv~P~s~~~v~~vv~~a~~~~i~v~~~G~G~n~~ 66 (90)
...+.|.+.++|.+.++.+.+. .-+++..||.+.+
T Consensus 41 ~~~~v~Dd~~~I~~~l~~a~~~-~DlVIttGG~g~t 75 (264)
T PRK01215 41 RITVVMDDIEEIVSAFREAIDR-ADVVVSTGGLGPT 75 (264)
T ss_pred EEEEeCCCHHHHHHHHHHHhcC-CCEEEEeCCCcCC
Confidence 3457899999999999988874 4899999998874
No 236
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=43.40 E-value=32 Score=26.10 Aligned_cols=22 Identities=18% Similarity=0.376 Sum_probs=18.2
Q ss_pred CCHHHHHHHHHHHHhCCCcEEE
Q psy4717 37 ESTEDVEKVVQVAHDHNLVIIP 58 (90)
Q Consensus 37 ~s~~~v~~vv~~a~~~~i~v~~ 58 (90)
+..+++.++.+.|++.|+|++.
T Consensus 176 ~ml~~l~~i~~ea~~~GlPlv~ 197 (348)
T PRK09250 176 RQIEEISEAFEEAHELGLATVL 197 (348)
T ss_pred HHHHHHHHHHHHHHHhCCCEEE
Confidence 3457888999999999999874
No 237
>PF10609 ParA: ParA/MinD ATPase like; InterPro: IPR019591 This entry represents ATPases involved in plasmid partitioning []. It also contains cytosolic Fe-S cluster assembling factors, NBP35 and CFD1 which are required for biogenesis and export of both ribosomal subunits probably through assembling the ISCs in RLI1, a protein which performs rRNA processing and ribosome export [, , ].; PDB: 2PH1_A 3KB1_B.
Probab=43.28 E-value=31 Score=20.67 Aligned_cols=27 Identities=15% Similarity=0.234 Sum_probs=18.7
Q ss_pred cEEEEcC--CHHHHHHHHHHHHhCCCcEE
Q psy4717 31 RYWCITE--STEDVEKVVQVAHDHNLVII 57 (90)
Q Consensus 31 ~~vv~P~--s~~~v~~vv~~a~~~~i~v~ 57 (90)
-.|-.|. +..++.+.+++|++.++|+.
T Consensus 29 ivVTTPq~la~~dv~r~~~~~~~~~vpil 57 (81)
T PF10609_consen 29 IVVTTPQELALADVRRAIDMFRKLNVPIL 57 (81)
T ss_dssp EEEE-CCC--HHHHHHHHHHHHCTT-EEE
T ss_pred EEEeCCHHHHHHHHHHHHHHHHhcCCCcE
Confidence 3344444 45899999999999998875
No 238
>TIGR03677 rpl7ae 50S ribosomal protein L7Ae. Multifunctional RNA-binding protein that recognizes the K-turn motif in ribosomal RNA, box H/ACA, box C/D and box C'/D' sRNAs. Interacts with protein L15e.
Probab=43.22 E-value=40 Score=21.29 Aligned_cols=33 Identities=12% Similarity=0.234 Sum_probs=27.2
Q ss_pred ccEEEEcCCHH--H-HHHHHHHHHhCCCcEEEEcCC
Q psy4717 30 TRYWCITESTE--D-VEKVVQVAHDHNLVIIPFGGG 62 (90)
Q Consensus 30 p~~vv~P~s~~--~-v~~vv~~a~~~~i~v~~~G~G 62 (90)
...|+...+++ + ...+..+|.++++|++..+.-
T Consensus 43 a~LVilA~D~s~~~~~~~i~~lc~~~~Ip~~~~~sk 78 (117)
T TIGR03677 43 AKLVVIAEDVEPPEIVAHLPALCEEKGIPYVYVKKK 78 (117)
T ss_pred ccEEEEeCCCCcHHHHHHHHHHHHHcCCCEEEeCCH
Confidence 78888888884 4 489999999999998887753
No 239
>PRK13775 formimidoylglutamase; Provisional
Probab=43.13 E-value=17 Score=26.89 Aligned_cols=31 Identities=26% Similarity=0.359 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHhCCCcEEEEcCCCCCCCCc
Q psy4717 39 TEDVEKVVQVAHDHNLVIIPFGGGTNVTGAV 69 (90)
Q Consensus 39 ~~~v~~vv~~a~~~~i~v~~~G~G~n~~~~~ 69 (90)
.+.+++.++...+.+.-.+.+||+|+++.+.
T Consensus 109 ~~~l~~~v~~~~~~g~~PivlGGdHsit~g~ 139 (328)
T PRK13775 109 QNSLSKAIKRMCDLNLKPIVLGGGHETAYGH 139 (328)
T ss_pred HHHHHHHHHHHHhCCCeEEEEcCcHHHHHHH
Confidence 4666777777777776667799999987655
No 240
>COG1990 pth2 Peptidyl-tRNA hydrolase [Translation, ribosomal structure and biogenesis]
Probab=43.12 E-value=92 Score=20.23 Aligned_cols=28 Identities=14% Similarity=0.059 Sum_probs=25.5
Q ss_pred CccEEEEcCCHHHHHHHHHHHHhCCCcE
Q psy4717 29 GTRYWCITESTEDVEKVVQVAHDHNLVI 56 (90)
Q Consensus 29 ~p~~vv~P~s~~~v~~vv~~a~~~~i~v 56 (90)
....++...+.+++.++-+-|...|+|-
T Consensus 56 q~Kivlkv~~~~eL~~~~~~A~~~gl~~ 83 (122)
T COG1990 56 QKKIVLKVGSLDELLELHQKAESLGLPT 83 (122)
T ss_pred CceEEEEcCCHHHHHHHHHHHHHcCChH
Confidence 4899999999999999999999998873
No 241
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=43.08 E-value=55 Score=22.22 Aligned_cols=34 Identities=12% Similarity=0.128 Sum_probs=24.5
Q ss_pred CccEE-EEcCCHHHHHHHHHHHHhCCCcEEEEcCC
Q psy4717 29 GTRYW-CITESTEDVEKVVQVAHDHNLVIIPFGGG 62 (90)
Q Consensus 29 ~p~~v-v~P~s~~~v~~vv~~a~~~~i~v~~~G~G 62 (90)
+++++ +.|.+...+.+.++.++++++|++.++..
T Consensus 57 ~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~~ 91 (275)
T cd06320 57 GYKGLLFSPISDVNLVPAVERAKKKGIPVVNVNDK 91 (275)
T ss_pred CCCEEEECCCChHHhHHHHHHHHHCCCeEEEECCC
Confidence 46664 55655555666788889999999998753
No 242
>PRK13938 phosphoheptose isomerase; Provisional
Probab=43.08 E-value=47 Score=22.80 Aligned_cols=28 Identities=11% Similarity=0.309 Sum_probs=24.2
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEEcCCCC
Q psy4717 37 ESTEDVEKVVQVAHDHNLVIIPFGGGTN 64 (90)
Q Consensus 37 ~s~~~v~~vv~~a~~~~i~v~~~G~G~n 64 (90)
...+++.++++.|++.|++++.+.+..+
T Consensus 124 G~t~~vi~a~~~Ak~~G~~vI~iT~~~~ 151 (196)
T PRK13938 124 GNSMSVLRAAKTARELGVTVVAMTGESG 151 (196)
T ss_pred CCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 4579999999999999999999987543
No 243
>PF13986 DUF4224: Domain of unknown function (DUF4224)
Probab=42.89 E-value=39 Score=18.02 Aligned_cols=21 Identities=10% Similarity=0.188 Sum_probs=16.7
Q ss_pred HHHHHHHHhCCCcEEEEcCCC
Q psy4717 43 EKVVQVAHDHNLVIIPFGGGT 63 (90)
Q Consensus 43 ~~vv~~a~~~~i~v~~~G~G~ 63 (90)
++-.++.+++|+++.+.-.|.
T Consensus 18 ~~Q~~~L~~~Gi~~~~~~~G~ 38 (47)
T PF13986_consen 18 SKQIRWLRRNGIPFVVRADGR 38 (47)
T ss_pred HHHHHHHHHCCCeeEECCCCC
Confidence 345688899999999977665
No 244
>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. They are mainly found in bacteria.
Probab=42.88 E-value=37 Score=25.28 Aligned_cols=28 Identities=36% Similarity=0.551 Sum_probs=23.2
Q ss_pred CHHHHHHHHHHHHhCCC-cEEEEcCCCCC
Q psy4717 38 STEDVEKVVQVAHDHNL-VIIPFGGGTNV 65 (90)
Q Consensus 38 s~~~v~~vv~~a~~~~i-~v~~~G~G~n~ 65 (90)
+.+.|.++++.+++.+. -++.+|||+-+
T Consensus 60 ~~~~v~~~~~~~~~~~~D~IIaiGGGS~~ 88 (374)
T cd08183 60 SVELVDAAVAEARNAGCDVVIAIGGGSVI 88 (374)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEecCchHH
Confidence 46889999999999877 47889999855
No 245
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=42.78 E-value=1.2e+02 Score=21.33 Aligned_cols=35 Identities=23% Similarity=0.262 Sum_probs=23.7
Q ss_pred CccEEEEcC-CHHHHHHHHHHHHhCCCcEEE-EcCCC
Q psy4717 29 GTRYWCITE-STEDVEKVVQVAHDHNLVIIP-FGGGT 63 (90)
Q Consensus 29 ~p~~vv~P~-s~~~v~~vv~~a~~~~i~v~~-~G~G~ 63 (90)
+++.++.|. ..|++..+++.|+++++...+ ..-.+
T Consensus 104 G~~giiipDl~~ee~~~~~~~~~~~g~~~i~~i~P~T 140 (242)
T cd04724 104 GVDGLIIPDLPPEEAEEFREAAKEYGLDLIFLVAPTT 140 (242)
T ss_pred CCcEEEECCCCHHHHHHHHHHHHHcCCcEEEEeCCCC
Confidence 466677644 467888888888888885444 44444
No 246
>PRK14462 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=42.49 E-value=75 Score=24.03 Aligned_cols=63 Identities=14% Similarity=0.151 Sum_probs=40.7
Q ss_pred cchhHHHHHHHHhccCccccceeeecC--ccEEEEcCCHHHHHHHHHHHHhCCCcEEEEcC-CCCCCC
Q psy4717 3 STEDVEKVVQVAHDHNLVVNHQAIFIG--TRYWCITESTEDVEKVVQVAHDHNLVIIPFGG-GTNVTG 67 (90)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--p~~vv~P~s~~~v~~vv~~a~~~~i~v~~~G~-G~n~~~ 67 (90)
|.++.+++++...+... .-+.+... +..=+.+.+.+++.+..++..++|+++.++-. |..+.+
T Consensus 277 s~e~a~~La~llk~l~~--~VnLIPyn~~~~~~~~~ps~e~i~~f~~~l~~~gi~vtvR~~~G~dI~a 342 (356)
T PRK14462 277 DLKSAKKLVKLLNGIKA--KVNLILFNPHEGSKFERPSLEDMIKFQDYLNSKGLLCTIRESKGLDISA 342 (356)
T ss_pred CHHHHHHHHHHHhhcCc--EEEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEeCCCCCchhh
Confidence 55777888886665432 12222222 23234667889999999999999999888743 555543
No 247
>PLN02891 IMP cyclohydrolase
Probab=42.46 E-value=32 Score=27.71 Aligned_cols=35 Identities=6% Similarity=0.101 Sum_probs=25.4
Q ss_pred CccEEEEcCCHHHHHHHHHHHHhCCCcEEEEcCCC
Q psy4717 29 GTRYWCITESTEDVEKVVQVAHDHNLVIIPFGGGT 63 (90)
Q Consensus 29 ~p~~vv~P~s~~~v~~vv~~a~~~~i~v~~~G~G~ 63 (90)
+..+|++|.--=-=.++++.|+++|+.++.-|--|
T Consensus 510 Gv~aIIQPGGSiRD~evI~aane~giaMvfTg~Rh 544 (547)
T PLN02891 510 GVKVIAEPGGSMRDQDAIDCCNKYGVALLFTGVRH 544 (547)
T ss_pred CCEEEECCCCCCCcHHHHHHHHHhCCEEEECCCCC
Confidence 46778888654334678888999999888866544
No 248
>TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase. In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein.
Probab=42.44 E-value=25 Score=27.35 Aligned_cols=22 Identities=18% Similarity=0.436 Sum_probs=19.9
Q ss_pred CCHHHHHHHHHHHHhCCCcEEE
Q psy4717 37 ESTEDVEKVVQVAHDHNLVIIP 58 (90)
Q Consensus 37 ~s~~~v~~vv~~a~~~~i~v~~ 58 (90)
...+++.++.++|++++++++.
T Consensus 219 g~~ddL~eIa~la~k~gI~lIv 240 (444)
T TIGR03531 219 RSPDDIEEIAKICANYDIPHIV 240 (444)
T ss_pred cchhCHHHHHHHHHHcCCEEEE
Confidence 3689999999999999999976
No 249
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=42.44 E-value=45 Score=25.98 Aligned_cols=34 Identities=9% Similarity=0.025 Sum_probs=28.8
Q ss_pred ccEEEEcCCHHHHHHHHHHHHhCCCcEEEEcCCC
Q psy4717 30 TRYWCITESTEDVEKVVQVAHDHNLVIIPFGGGT 63 (90)
Q Consensus 30 p~~vv~P~s~~~v~~vv~~a~~~~i~v~~~G~G~ 63 (90)
++.++.|++.+|+..++++.++...|++.++-|-
T Consensus 133 ~Kia~~a~~~~D~l~ll~~~~~~~~p~i~i~MG~ 166 (477)
T PRK09310 133 YKIAVSSSSSTDLLNIIHQKRSLPENTTVLCMGG 166 (477)
T ss_pred EEEeeCCCCHHHHHHHHHHHhhCCCCEEEEEeCC
Confidence 6788999999999999999988888877666544
No 250
>cd06360 PBP1_alkylbenzenes_like Type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene. This group includes the type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene; their substrate specificity is not well characterized, however.
Probab=42.43 E-value=60 Score=22.82 Aligned_cols=35 Identities=20% Similarity=0.071 Sum_probs=28.5
Q ss_pred CccEEEEcCCHHHHHHHHHHHHhCCC--cEEEEcCCC
Q psy4717 29 GTRYWCITESTEDVEKVVQVAHDHNL--VIIPFGGGT 63 (90)
Q Consensus 29 ~p~~vv~P~s~~~v~~vv~~a~~~~i--~v~~~G~G~ 63 (90)
+|++|+......+...+++-+++.++ .+.++|.+.
T Consensus 189 ~pd~v~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 225 (336)
T cd06360 189 VPDAVFVFFAGGDAIKFVKQYDAAGLKAKIPLIGSGF 225 (336)
T ss_pred CCCEEEEecccccHHHHHHHHHHcCCccCCeEEeccc
Confidence 38999988888999999999999988 666666543
No 251
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=42.40 E-value=53 Score=22.79 Aligned_cols=32 Identities=16% Similarity=0.239 Sum_probs=26.4
Q ss_pred EEcCCHHHHHHHHHHHHhCCCcEEEEcCCCCC
Q psy4717 34 CITESTEDVEKVVQVAHDHNLVIIPFGGGTNV 65 (90)
Q Consensus 34 v~P~s~~~v~~vv~~a~~~~i~v~~~G~G~n~ 65 (90)
-.....+++.++++.|++.|++++.+.+..+-
T Consensus 55 S~sG~t~~~~~~~~~a~~~g~~ii~iT~~~~s 86 (268)
T TIGR00393 55 SYSGESLELLNLIPHLKRLSHKIIAFTGSPNS 86 (268)
T ss_pred eCCCCCHHHHHHHHHHHHcCCcEEEEECCCCC
Confidence 34457799999999999999999999875543
No 252
>cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=42.40 E-value=61 Score=22.24 Aligned_cols=34 Identities=15% Similarity=0.171 Sum_probs=25.7
Q ss_pred ccEEEE-cCCHHHHHHHHHHHHhCCCcEEEEcCCC
Q psy4717 30 TRYWCI-TESTEDVEKVVQVAHDHNLVIIPFGGGT 63 (90)
Q Consensus 30 p~~vv~-P~s~~~v~~vv~~a~~~~i~v~~~G~G~ 63 (90)
++.++. |.+.+....+++.+.+.++|++.++...
T Consensus 56 vdgiii~~~~~~~~~~~i~~~~~~~iPvV~~~~~~ 90 (272)
T cd06313 56 WDFIAVDPLGIGTLTEAVQKAIARGIPVIDMGTLI 90 (272)
T ss_pred CCEEEEcCCChHHhHHHHHHHHHCCCcEEEeCCCC
Confidence 665555 6555667788899999999999997643
No 253
>PF13611 Peptidase_S76: Serine peptidase of plant viral polyprotein, P1
Probab=42.35 E-value=37 Score=21.99 Aligned_cols=35 Identities=11% Similarity=0.163 Sum_probs=26.6
Q ss_pred ccEEEEcCCHHH-HHHHHHHHHhCCCcEEEEcCCCCC
Q psy4717 30 TRYWCITESTED-VEKVVQVAHDHNLVIIPFGGGTNV 65 (90)
Q Consensus 30 p~~vv~P~s~~~-v~~vv~~a~~~~i~v~~~G~G~n~ 65 (90)
..++.. .++.| +.++.+.|.+.|+|+...|++..-
T Consensus 27 ~~vv~~-~~i~dL~~~~~~ic~ergiPIe~I~~~k~k 62 (121)
T PF13611_consen 27 KQVVAN-NEIDDLVREVTEICCERGIPIEIIDKKKRK 62 (121)
T ss_pred cceEec-CcHHHHHHHHHHHHHHcCCCEEEecCccee
Confidence 344555 45555 478899999999999999998755
No 254
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=41.95 E-value=54 Score=23.51 Aligned_cols=29 Identities=7% Similarity=0.365 Sum_probs=24.7
Q ss_pred EcCCHHHHHHHHHHHHhCCCcEEEEcCCC
Q psy4717 35 ITESTEDVEKVVQVAHDHNLVIIPFGGGT 63 (90)
Q Consensus 35 ~P~s~~~v~~vv~~a~~~~i~v~~~G~G~ 63 (90)
.....+++.++++.|++.|++++.+.+..
T Consensus 98 ~sG~t~~~~~~~~~ak~~g~~vI~iT~~~ 126 (321)
T PRK11543 98 YSGGAKELDLIIPRLEDKSIALLAMTGKP 126 (321)
T ss_pred CCCCcHHHHHHHHHHHHcCCeEEEEECCC
Confidence 34567999999999999999999998743
No 255
>PF10740 DUF2529: Protein of unknown function (DUF2529); InterPro: IPR019676 This entry represents a protein family conserved in the Bacillales. Their function is not known. ; PDB: 3JX9_A.
Probab=41.61 E-value=43 Score=22.97 Aligned_cols=30 Identities=7% Similarity=0.065 Sum_probs=21.9
Q ss_pred cEEEEcCCHH-HHHHHHHHHHhCCCcEEEEc
Q psy4717 31 RYWCITESTE-DVEKVVQVAHDHNLVIIPFG 60 (90)
Q Consensus 31 ~~vv~P~s~~-~v~~vv~~a~~~~i~v~~~G 60 (90)
-.++.|.+.+ ++.++.+-+.+.++|++..+
T Consensus 85 Vllfs~~~~~~e~~~~a~~L~~~gi~~v~Vs 115 (172)
T PF10740_consen 85 VLLFSPFSTDEEAVALAKQLIEQGIPFVGVS 115 (172)
T ss_dssp EEEEES-S--HHHHHHHHHHHHHT--EEEEE
T ss_pred EEEEeCCCCCHHHHHHHHHHHHCCCCEEEEE
Confidence 3567787777 99999999999999999998
No 256
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=41.53 E-value=37 Score=26.25 Aligned_cols=21 Identities=10% Similarity=0.395 Sum_probs=19.7
Q ss_pred CHHHHHHHHHHHHhCCCcEEE
Q psy4717 38 STEDVEKVVQVAHDHNLVIIP 58 (90)
Q Consensus 38 s~~~v~~vv~~a~~~~i~v~~ 58 (90)
|.+|++++++.|+++|+.|+.
T Consensus 79 t~~dl~~Li~~~H~~Gi~vi~ 99 (479)
T PRK09441 79 TKEELLNAIDALHENGIKVYA 99 (479)
T ss_pred CHHHHHHHHHHHHHCCCEEEE
Confidence 899999999999999999776
No 257
>cd01582 Homoaconitase Homoaconitase and other uncharacterized proteins of the Aconitase family. Homoaconitase catalytic domain. Homoaconitase and other uncharacterized proteins of the Aconitase family. Homoaconitase is part of an unusual lysine biosynthesis pathway found only in filamentous fungi, in which lysine is synthesized via the alpha-aminoadipate pathway. In this pathway, homoaconitase catalyzes the conversion of cis-homoaconitic acid into homoisocitric acid. The reaction mechanism is believed to be similar to that of other aconitases.
Probab=41.51 E-value=21 Score=27.20 Aligned_cols=27 Identities=19% Similarity=0.401 Sum_probs=22.3
Q ss_pred cCCHHHHHHHHHHHHhCCCcEEEEcCC
Q psy4717 36 TESTEDVEKVVQVAHDHNLVIIPFGGG 62 (90)
Q Consensus 36 P~s~~~v~~vv~~a~~~~i~v~~~G~G 62 (90)
+++.+....+-++|+++++.+++.|.|
T Consensus 42 ~~~~~~~~~lr~~ak~~gi~~~~~g~G 68 (363)
T cd01582 42 EKNLKKYKNIESFAKKHGIDFYPAGRG 68 (363)
T ss_pred HHHHHHHHHHHHHHHHhCCeEECCCCC
Confidence 445678899999999999999988754
No 258
>cd00609 AAT_like Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi
Probab=41.44 E-value=35 Score=23.88 Aligned_cols=23 Identities=30% Similarity=0.551 Sum_probs=19.3
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEc
Q psy4717 38 STEDVEKVVQVAHDHNLVIIPFG 60 (90)
Q Consensus 38 s~~~v~~vv~~a~~~~i~v~~~G 60 (90)
+.+++.+++++|+++++.+++=+
T Consensus 150 ~~~~l~~l~~~~~~~~~~~ivD~ 172 (350)
T cd00609 150 SEEELEELAELAKKHGILIISDE 172 (350)
T ss_pred CHHHHHHHHHHHHhCCeEEEEec
Confidence 46899999999999999887544
No 259
>cd03768 SR_ResInv Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. Resolvases and invertases affect resolution or inversion and comprise a major phylogenic group. Resolvases (e.g. Tn3, gamma-delta, and Tn5044) normally recombine two sites in direct repeat causing deletion of the DNA between the sites. Invertases (e.g. Gin and Hin) recombine sites in inverted repeat to invert the DNA between the sites. Cointegrate resolution with gamma-delta resolvase requires the formation of a synaptosome of three resolvase dimers bound to each of two res sites on the DNA. Also included in this subfamily are some
Probab=41.39 E-value=68 Score=19.51 Aligned_cols=28 Identities=18% Similarity=0.364 Sum_probs=23.4
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEEcCCCC
Q psy4717 37 ESTEDVEKVVQVAHDHNLVIIPFGGGTN 64 (90)
Q Consensus 37 ~s~~~v~~vv~~a~~~~i~v~~~G~G~n 64 (90)
++..|+..++++|.++|+.++....+-+
T Consensus 68 R~~~e~~~~~~~l~~~gi~l~~~~~~~~ 95 (126)
T cd03768 68 RSTKDLLEIVEELREKGVSLRSLTEGID 95 (126)
T ss_pred CcHHHHHHHHHHHHHCCCEEEEecCCCC
Confidence 4678999999999999999999855443
No 260
>cd06316 PBP1_ABC_sugar_binding_like_7 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=41.38 E-value=47 Score=23.01 Aligned_cols=33 Identities=0% Similarity=-0.060 Sum_probs=24.6
Q ss_pred ccEEEE-cCCHHHHHHHHHHHHhCCCcEEEEcCC
Q psy4717 30 TRYWCI-TESTEDVEKVVQVAHDHNLVIIPFGGG 62 (90)
Q Consensus 30 p~~vv~-P~s~~~v~~vv~~a~~~~i~v~~~G~G 62 (90)
++.++. |.+.+...+.++.+.+.++|++.++.-
T Consensus 57 ~dgiii~~~~~~~~~~~i~~~~~~~iPvV~~~~~ 90 (294)
T cd06316 57 PDIIISIPVDPVSTAAAYKKVAEAGIKLVFMDNV 90 (294)
T ss_pred CCEEEEcCCCchhhhHHHHHHHHcCCcEEEecCC
Confidence 666555 555554677889999999999998763
No 261
>cd00617 Tnase_like Tryptophanase family (Tnase). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia.
Probab=41.30 E-value=34 Score=26.33 Aligned_cols=23 Identities=17% Similarity=0.330 Sum_probs=19.8
Q ss_pred EcCCHHHHHHHHHHHHhCCCcEE
Q psy4717 35 ITESTEDVEKVVQVAHDHNLVII 57 (90)
Q Consensus 35 ~P~s~~~v~~vv~~a~~~~i~v~ 57 (90)
.|-+.+++.++.++|++++++++
T Consensus 168 ~~~s~~~l~~i~eia~~~gi~li 190 (431)
T cd00617 168 QPVSMANLREVRELAHKYGIPVV 190 (431)
T ss_pred ccCCHHHHHHHHHHHHHcCCEEE
Confidence 45567899999999999999985
No 262
>PF02244 Propep_M14: Carboxypeptidase activation peptide; InterPro: IPR003146 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. The peptidases are synthesised as inactive molecules, zymogens, with propeptides that must be removed by proteolytic cleavage to activate the enzyme. Structural studies of carboxypeptidases A and B reveal the propeptide to exist as a globular domain, followed by an extended alpha-helix; this shields the catalytic site, without specifically binding to it, while the substrate-binding site is blocked by making specific contacts [, ]. Members of this propeptide family are found in the metallocarboxypeptidases: A1, A2 [], A3, A4, A5, A6, U, insect gut carboxypeptidase and B [], and and are associated with peptidases belonging to MEROPS peptidase family M14A. Carboxypeptidases are found in abundance in pancreatic secretions. The pro-segment moiety (activation peptide) accounts for up to a quarter of the total length of the peptidase.; GO: 0004180 carboxypeptidase activity, 0006508 proteolysis; PDB: 3D68_C 3D67_B 3D66_A 1PBA_A 3GLJ_A 1NSA_A 1KWM_A 2BOA_B 1PYT_A 1JQG_A ....
Probab=41.26 E-value=47 Score=18.56 Aligned_cols=28 Identities=11% Similarity=0.146 Sum_probs=22.1
Q ss_pred EEcCCHHHHHHHHHHHHhCCCcEEEEcC
Q psy4717 34 CITESTEDVEKVVQVAHDHNLVIIPFGG 61 (90)
Q Consensus 34 v~P~s~~~v~~vv~~a~~~~i~v~~~G~ 61 (90)
+.|+|.+++..+-++....++-|+-...
T Consensus 3 v~p~t~~q~~~L~~L~~~~~~dfW~~~~ 30 (74)
T PF02244_consen 3 VTPKTEEQLELLQELEQSNELDFWKEPS 30 (74)
T ss_dssp EEESSHHHHHHHHHHHHHSTEEEEESSS
T ss_pred EEeCCHHHHHHHHHHhcccceeeecCCC
Confidence 7899999999999999777766655433
No 263
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=41.24 E-value=57 Score=18.30 Aligned_cols=26 Identities=15% Similarity=0.210 Sum_probs=20.0
Q ss_pred cCCHHHHHHHHHHHHhCC-CcEEEEcC
Q psy4717 36 TESTEDVEKVVQVAHDHN-LVIIPFGG 61 (90)
Q Consensus 36 P~s~~~v~~vv~~a~~~~-i~v~~~G~ 61 (90)
.....++.++++++.+.| .....-|.
T Consensus 30 ~~~~~~i~~~~~~~~~~Ga~~~~~sGs 56 (85)
T PF08544_consen 30 EVLTPEIDELKEAAEENGALGAKMSGS 56 (85)
T ss_dssp THHHHHHHHHHHHHHHTTESEEEEETT
T ss_pred HHcCHHHHHHHHHHHHCCCCceecCCC
Confidence 344578999999999999 66666665
No 264
>cd06342 PBP1_ABC_LIVBP_like Type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup includes the type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup also includes a leucine-specific binding protein (or LivK), which is very similar in sequence and structure to leucine-isoleucine-valine binding protein (LIVBP). ABC-type active transport systems are transmembrane proteins that function in the transport of diverse sets of substrates across extra- and intracellular membranes, including carbohydrates, amino acids, inorganic ions, dipeptides and oligopeptides, metabolic products, lipids and sterols, and heme, to name a few.
Probab=41.24 E-value=81 Score=22.07 Aligned_cols=33 Identities=12% Similarity=0.055 Sum_probs=27.6
Q ss_pred CccEEEEcCCHHHHHHHHHHHHhCCCcEEEEcC
Q psy4717 29 GTRYWCITESTEDVEKVVQVAHDHNLVIIPFGG 61 (90)
Q Consensus 29 ~p~~vv~P~s~~~v~~vv~~a~~~~i~v~~~G~ 61 (90)
+|++|+.....++...+++-+++.++....+|.
T Consensus 190 ~~~~vi~~~~~~~~~~~~~~~~~~g~~~~~~~~ 222 (334)
T cd06342 190 NPDAVFFGGYYPEAGPLVRQMRQLGLKAPFMGG 222 (334)
T ss_pred CCCEEEEcCcchhHHHHHHHHHHcCCCCcEEec
Confidence 489999999999999999999998887555543
No 265
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=41.21 E-value=87 Score=22.72 Aligned_cols=37 Identities=14% Similarity=0.275 Sum_probs=28.1
Q ss_pred CccEEEEc-CCHHHHHHHHHHHHhCCCcEEEEcCCCCC
Q psy4717 29 GTRYWCIT-ESTEDVEKVVQVAHDHNLVIIPFGGGTNV 65 (90)
Q Consensus 29 ~p~~vv~P-~s~~~v~~vv~~a~~~~i~v~~~G~G~n~ 65 (90)
.+++|+-. .+...-..+.++|+++++|++..||.-|-
T Consensus 121 ~~D~VIdaiD~~~~k~~L~~~c~~~~ip~I~~gGag~k 158 (268)
T PRK15116 121 GFSYVIDAIDSVRPKAALIAYCRRNKIPLVTTGGAGGQ 158 (268)
T ss_pred CCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEECCcccC
Confidence 36777766 45577788999999999999977664443
No 266
>cd08188 Fe-ADH4 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=41.18 E-value=42 Score=25.05 Aligned_cols=28 Identities=25% Similarity=0.419 Sum_probs=23.0
Q ss_pred CHHHHHHHHHHHHhCCCc-EEEEcCCCCC
Q psy4717 38 STEDVEKVVQVAHDHNLV-IIPFGGGTNV 65 (90)
Q Consensus 38 s~~~v~~vv~~a~~~~i~-v~~~G~G~n~ 65 (90)
+.++|.++++.+++.+.. ++.+|||+-+
T Consensus 70 ~~~~v~~~~~~~~~~~~d~IIaiGGGsvi 98 (377)
T cd08188 70 RDEEVMAGAELYLENGCDVIIAVGGGSPI 98 (377)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCchHH
Confidence 678899999999988875 6669999865
No 267
>PTZ00063 histone deacetylase; Provisional
Probab=41.17 E-value=41 Score=26.27 Aligned_cols=28 Identities=18% Similarity=0.434 Sum_probs=22.2
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEc-CCCCC
Q psy4717 38 STEDVEKVVQVAHDHNLVIIPFG-GGTNV 65 (90)
Q Consensus 38 s~~~v~~vv~~a~~~~i~v~~~G-~G~n~ 65 (90)
|.+...++++++++.++|++..| ||-++
T Consensus 274 t~~g~~~~~~~~~~~~~pil~l~gGGY~~ 302 (436)
T PTZ00063 274 TIKGHAACVEFVRSLNIPLLVLGGGGYTI 302 (436)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCccCCc
Confidence 56788899999999999977765 56654
No 268
>PF04800 ETC_C1_NDUFA4: ETC complex I subunit conserved region; InterPro: IPR006885 This entry represents prokaryotic NADH-ubiquinone oxidoreductase subunits (1.6.5.3 from EC, 1.6.99.3 from EC) from complex I of the electron transport chain initially identified in Neurospora crassa as a 21 kDa protein [].; GO: 0016651 oxidoreductase activity, acting on NADH or NADPH, 0022900 electron transport chain, 0005743 mitochondrial inner membrane; PDB: 2JYA_A 2LJU_A.
Probab=41.10 E-value=35 Score=21.31 Aligned_cols=20 Identities=10% Similarity=-0.109 Sum_probs=14.7
Q ss_pred HHHHHHHHHhCCCcEEEEcC
Q psy4717 42 VEKVVQVAHDHNLVIIPFGG 61 (90)
Q Consensus 42 v~~vv~~a~~~~i~v~~~G~ 61 (90)
..+++.+|.++|+++.+..-
T Consensus 58 kE~Ai~yaer~G~~Y~V~~p 77 (101)
T PF04800_consen 58 KEDAIAYAERNGWDYEVEEP 77 (101)
T ss_dssp HHHHHHHHHHCT-EEEEE-S
T ss_pred HHHHHHHHHHcCCeEEEeCC
Confidence 35688999999999988643
No 269
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=40.98 E-value=35 Score=24.98 Aligned_cols=37 Identities=11% Similarity=0.112 Sum_probs=27.4
Q ss_pred CccEEEEcCC-HHHHHHHHHHHHhCCCcEEEEcCCCCC
Q psy4717 29 GTRYWCITES-TEDVEKVVQVAHDHNLVIIPFGGGTNV 65 (90)
Q Consensus 29 ~p~~vv~P~s-~~~v~~vv~~a~~~~i~v~~~G~G~n~ 65 (90)
.+++|+-.-+ +.-=..++.||.++++|++-.||.-+-
T Consensus 121 ~~DyvIDaiD~v~~Kv~Li~~c~~~ki~vIss~Gag~k 158 (263)
T COG1179 121 GFDYVIDAIDSVRAKVALIAYCRRNKIPVISSMGAGGK 158 (263)
T ss_pred CCCEEEEchhhhHHHHHHHHHHHHcCCCEEeeccccCC
Confidence 5787776533 344468899999999999988776554
No 270
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=40.95 E-value=35 Score=20.00 Aligned_cols=24 Identities=4% Similarity=0.116 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHhCCCcEEEEcCCC
Q psy4717 40 EDVEKVVQVAHDHNLVIIPFGGGT 63 (90)
Q Consensus 40 ~~v~~vv~~a~~~~i~v~~~G~G~ 63 (90)
+++.++++.+++++.++++.+++.
T Consensus 27 ~~~~~~l~~l~~~g~~i~ivS~~~ 50 (139)
T cd01427 27 PGVKEALKELKEKGIKLALATNKS 50 (139)
T ss_pred cCHHHHHHHHHHCCCeEEEEeCch
Confidence 567788888888889988888764
No 271
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=40.91 E-value=58 Score=19.62 Aligned_cols=28 Identities=14% Similarity=0.312 Sum_probs=22.9
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEEcCCCC
Q psy4717 37 ESTEDVEKVVQVAHDHNLVIIPFGGGTN 64 (90)
Q Consensus 37 ~s~~~v~~vv~~a~~~~i~v~~~G~G~n 64 (90)
....++.++++.|++++++++.+.+-.+
T Consensus 71 g~~~~~~~~~~~a~~~g~~iv~iT~~~~ 98 (139)
T cd05013 71 GETKETVEAAEIAKERGAKVIAITDSAN 98 (139)
T ss_pred CCCHHHHHHHHHHHHcCCeEEEEcCCCC
Confidence 3557899999999999999988877443
No 272
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=40.82 E-value=56 Score=21.38 Aligned_cols=27 Identities=11% Similarity=0.209 Sum_probs=22.6
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEcCCCC
Q psy4717 38 STEDVEKVVQVAHDHNLVIIPFGGGTN 64 (90)
Q Consensus 38 s~~~v~~vv~~a~~~~i~v~~~G~G~n 64 (90)
..+++.++++.+++.|+++....|++.
T Consensus 73 ~~~~l~~ll~~lk~~Gl~i~l~Tg~~~ 99 (147)
T TIGR02826 73 NREALLSLLKIFKEKGLKTCLYTGLEP 99 (147)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCC
Confidence 347889999999999999999987664
No 273
>KOG1185|consensus
Probab=40.76 E-value=47 Score=26.72 Aligned_cols=30 Identities=17% Similarity=0.321 Sum_probs=27.0
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEEcCCCCCC
Q psy4717 37 ESTEDVEKVVQVAHDHNLVIIPFGGGTNVT 66 (90)
Q Consensus 37 ~s~~~v~~vv~~a~~~~i~v~~~G~G~n~~ 66 (90)
...++|++++++.+.++-|++++|.|.-+.
T Consensus 202 p~~s~i~~av~llk~AKrPLlvvGkgAa~~ 231 (571)
T KOG1185|consen 202 PPPSQIQKAVQLLKSAKRPLLVVGKGAAYA 231 (571)
T ss_pred CCHHHHHHHHHHHHhcCCcEEEEecccccC
Confidence 356899999999999999999999998775
No 274
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=40.53 E-value=76 Score=22.23 Aligned_cols=35 Identities=17% Similarity=0.185 Sum_probs=25.6
Q ss_pred CccEEEEc----CCHHHHHHHHHHHHhCCCcEEE-EcCCC
Q psy4717 29 GTRYWCIT----ESTEDVEKVVQVAHDHNLVIIP-FGGGT 63 (90)
Q Consensus 29 ~p~~vv~P----~s~~~v~~vv~~a~~~~i~v~~-~G~G~ 63 (90)
+++.+..| ++.++..++++.|+++|+...+ ..-.|
T Consensus 101 Gadgvii~dlp~e~~~~~~~~~~~~~~~Gl~~~~~v~p~T 140 (244)
T PRK13125 101 GADGVLFPDLLIDYPDDLEKYVEIIKNKGLKPVFFTSPKF 140 (244)
T ss_pred CCCEEEECCCCCCcHHHHHHHHHHHHHcCCCEEEEECCCC
Confidence 47888887 4468999999999999986444 44444
No 275
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=40.48 E-value=38 Score=21.88 Aligned_cols=21 Identities=10% Similarity=0.260 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHhCCCcEEEEc
Q psy4717 40 EDVEKVVQVAHDHNLVIIPFG 60 (90)
Q Consensus 40 ~~v~~vv~~a~~~~i~v~~~G 60 (90)
+=+.++++.|++.||.+.++=
T Consensus 44 Dllge~v~a~h~~Girv~ay~ 64 (132)
T PF14871_consen 44 DLLGEQVEACHERGIRVPAYF 64 (132)
T ss_pred CHHHHHHHHHHHCCCEEEEEE
Confidence 556999999999999988763
No 276
>cd06321 PBP1_ABC_sugar_binding_like_11 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=40.46 E-value=68 Score=21.72 Aligned_cols=33 Identities=9% Similarity=0.145 Sum_probs=24.3
Q ss_pred ccEE-EEcCCHHHHHHHHHHHHhCCCcEEEEcCC
Q psy4717 30 TRYW-CITESTEDVEKVVQVAHDHNLVIIPFGGG 62 (90)
Q Consensus 30 p~~v-v~P~s~~~v~~vv~~a~~~~i~v~~~G~G 62 (90)
++.+ +.|.+.+.....++.+.+.++|++.++..
T Consensus 58 ~dgiIi~~~~~~~~~~~i~~~~~~~ipvv~~~~~ 91 (271)
T cd06321 58 VDLILLNAVDSKGIAPAVKRAQAAGIVVVAVDVA 91 (271)
T ss_pred CCEEEEeCCChhHhHHHHHHHHHCCCeEEEecCC
Confidence 5544 45666555677888888999999999764
No 277
>COG4821 Uncharacterized protein containing SIS (Sugar ISomerase) phosphosugar binding domain [General function prediction only]
Probab=40.35 E-value=43 Score=23.97 Aligned_cols=27 Identities=22% Similarity=0.262 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHhCCCcEEEEcCCCCC
Q psy4717 39 TEDVEKVVQVAHDHNLVIIPFGGGTNV 65 (90)
Q Consensus 39 ~~~v~~vv~~a~~~~i~v~~~G~G~n~ 65 (90)
..+.++++..+..++-.+.++|.||+-
T Consensus 24 i~kaa~lVAesi~n~g~i~~FG~GHSh 50 (243)
T COG4821 24 IKKAAKLVAESIMNDGRIYVFGSGHSH 50 (243)
T ss_pred HHHHHHHHHHHHhcCCEEEEecCchHH
Confidence 356677788888899999999999974
No 278
>COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism]
Probab=40.29 E-value=34 Score=25.93 Aligned_cols=24 Identities=21% Similarity=0.390 Sum_probs=20.7
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEcC
Q psy4717 38 STEDVEKVVQVAHDHNLVIIPFGG 61 (90)
Q Consensus 38 s~~~v~~vv~~a~~~~i~v~~~G~ 61 (90)
+.+++.++.++|+++++|+..=|.
T Consensus 148 ~l~el~~i~~~~k~~~l~LHmDGA 171 (342)
T COG2008 148 PLDELEAISAVCKEHGLPLHMDGA 171 (342)
T ss_pred CHHHHHHHHHHHHHhCCceeechH
Confidence 469999999999999999877554
No 279
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=40.10 E-value=38 Score=22.90 Aligned_cols=25 Identities=20% Similarity=0.454 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHhCCCcEEEEcCCCC
Q psy4717 40 EDVEKVVQVAHDHNLVIIPFGGGTN 64 (90)
Q Consensus 40 ~~v~~vv~~a~~~~i~v~~~G~G~n 64 (90)
+.+.+++++++++++++.+.++|..
T Consensus 73 pg~~e~l~~l~~~g~~~~IvS~~~~ 97 (214)
T TIGR03333 73 EGFREFVAFINEHGIPFYVISGGMD 97 (214)
T ss_pred ccHHHHHHHHHHCCCeEEEECCCcH
Confidence 4667888999999999999999875
No 280
>cd01540 PBP1_arabinose_binding Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. ABP is only involved in transport contrary to other related sugar-binding proteins such as the glucose/galactose-binding protein (GGBP) and the ribose-binding protein (RBP), both of which are involved in chemotaxis as well as transport. The periplasmic ABP consists of two alpha/beta globular domains connected by a three-stranded hinge, a Venus flytrap-like domain, which undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, ABP is homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR) and DNA-binding transcriptional repressors such a
Probab=40.09 E-value=59 Score=22.26 Aligned_cols=34 Identities=15% Similarity=0.220 Sum_probs=24.8
Q ss_pred CccEEEE-cCCHHHHHHHHHHHHhCCCcEEEEcCC
Q psy4717 29 GTRYWCI-TESTEDVEKVVQVAHDHNLVIIPFGGG 62 (90)
Q Consensus 29 ~p~~vv~-P~s~~~v~~vv~~a~~~~i~v~~~G~G 62 (90)
+++.++. |...+....+++.+.+.++|++.++..
T Consensus 54 ~~dgiii~~~~~~~~~~~~~~~~~~~iPvV~~~~~ 88 (289)
T cd01540 54 GAKGFVICVPDVKLGPAIVAKAKAYNMKVVAVDDR 88 (289)
T ss_pred CCCEEEEccCchhhhHHHHHHHHhCCCeEEEecCC
Confidence 4666655 544445567889999999999998753
No 281
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=40.07 E-value=76 Score=23.22 Aligned_cols=34 Identities=9% Similarity=0.158 Sum_probs=27.7
Q ss_pred CccEE-EEcCCHHHHHHHHHHHHhCCCcEEEEcCC
Q psy4717 29 GTRYW-CITESTEDVEKVVQVAHDHNLVIIPFGGG 62 (90)
Q Consensus 29 ~p~~v-v~P~s~~~v~~vv~~a~~~~i~v~~~G~G 62 (90)
+++++ +.|.+.+.+...++.|.+.++|++.+...
T Consensus 80 ~vdgIiv~~~d~~al~~~l~~a~~~gIpVV~~d~~ 114 (336)
T PRK15408 80 GYNAIIVSAVSPDGLCPALKRAMQRGVKVLTWDSD 114 (336)
T ss_pred CCCEEEEecCCHHHHHHHHHHHHHCCCeEEEeCCC
Confidence 35554 44888888899999999999999998765
No 282
>TIGR01230 agmatinase agmatinase. Note: a history of early misannotation of members of this family is detailed in PUBMED:10931887.
Probab=39.93 E-value=24 Score=25.30 Aligned_cols=31 Identities=16% Similarity=0.247 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHhCCCcEEEEcCCCCCCCCc
Q psy4717 39 TEDVEKVVQVAHDHNLVIIPFGGGTNVTGAV 69 (90)
Q Consensus 39 ~~~v~~vv~~a~~~~i~v~~~G~G~n~~~~~ 69 (90)
.+.+++.++...+.+.-.+.+||.|+++.+.
T Consensus 79 ~~~i~~~v~~~~~~~~~pi~lGGdHsis~~~ 109 (275)
T TIGR01230 79 FEKIQEHAEEFLEEGKFPVAIGGEHSITLPV 109 (275)
T ss_pred HHHHHHHHHHHHhcCCeEEEecCcchhhHHH
Confidence 3555666666667777777799999997655
No 283
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=39.72 E-value=37 Score=22.12 Aligned_cols=25 Identities=20% Similarity=0.284 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHhCCCcEEEEcCCCC
Q psy4717 40 EDVEKVVQVAHDHNLVIIPFGGGTN 64 (90)
Q Consensus 40 ~~v~~vv~~a~~~~i~v~~~G~G~n 64 (90)
..+.++++.++++|+++.+.++|..
T Consensus 83 ~g~~e~l~~l~~~g~~~~IvS~~~~ 107 (201)
T TIGR01491 83 DYAEELVRWLKEKGLKTAIVSGGIM 107 (201)
T ss_pred ccHHHHHHHHHHCCCEEEEEeCCcH
Confidence 4678889999999999999998864
No 284
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=39.67 E-value=45 Score=22.72 Aligned_cols=32 Identities=6% Similarity=0.105 Sum_probs=26.6
Q ss_pred cCccEEEEcCCHHHHHHHHHHHHhCCCcEEEEc
Q psy4717 28 IGTRYWCITESTEDVEKVVQVAHDHNLVIIPFG 60 (90)
Q Consensus 28 ~~p~~vv~P~s~~~v~~vv~~a~~~~i~v~~~G 60 (90)
..|++|+.-...++ ..+++.|.+.++|++.+-
T Consensus 126 ~~Pdlviv~~~~~~-~~ai~Ea~~l~IP~I~i~ 157 (193)
T cd01425 126 RLPDLVIVLDPRKE-HQAIREASKLGIPVIAIV 157 (193)
T ss_pred cCCCEEEEeCCccc-hHHHHHHHHcCCCEEEEe
Confidence 35999999988777 677888999999998875
No 285
>PTZ00222 60S ribosomal protein L7a; Provisional
Probab=39.52 E-value=49 Score=24.24 Aligned_cols=35 Identities=11% Similarity=0.138 Sum_probs=28.9
Q ss_pred ccEEEEcCCHHHHHH---HHHHHHhCCCcEEEEcCCCC
Q psy4717 30 TRYWCITESTEDVEK---VVQVAHDHNLVIIPFGGGTN 64 (90)
Q Consensus 30 p~~vv~P~s~~~v~~---vv~~a~~~~i~v~~~G~G~n 64 (90)
+..|+..++++++.. +-.+|+++++|+...++-.-
T Consensus 149 AkLVIIA~DVsPie~vk~LpaLCrk~~VPY~iVktKae 186 (263)
T PTZ00222 149 ARMVVIANNVDPVELVLWMPNLCRANKIPYAIVKDMAR 186 (263)
T ss_pred ceEEEEeCCCCHHHHHHHHHHHHHhcCCCEEEECCHHH
Confidence 889999999876655 66999999999999987443
No 286
>TIGR00106 uncharacterized protein, MTH1187 family. This protein has been crystallized in both Methanobacterium thermoautotrophicum and yeast, but its function remains unknown. Both crystal structures showed sulfate ions bound at the interface of two dimers to form a tetramer.
Probab=39.43 E-value=85 Score=19.21 Aligned_cols=28 Identities=18% Similarity=0.157 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHhCCCcEEEEcCCCCCC
Q psy4717 39 TEDVEKVVQVAHDHNLVIIPFGGGTNVT 66 (90)
Q Consensus 39 ~~~v~~vv~~a~~~~i~v~~~G~G~n~~ 66 (90)
.+.|+++++..++.|+++.+-.-||.+.
T Consensus 18 s~yVa~~i~~l~~sGl~y~~~pm~T~IE 45 (97)
T TIGR00106 18 SSYVAAAIEVLKESGLKYELHPMGTLIE 45 (97)
T ss_pred HHHHHHHHHHHHHcCCCeEecCCccEEe
Confidence 4556666666666666666666666554
No 287
>PRK07324 transaminase; Validated
Probab=39.42 E-value=65 Score=23.69 Aligned_cols=21 Identities=14% Similarity=0.368 Sum_probs=18.0
Q ss_pred CHHHHHHHHHHHHhCCCcEEE
Q psy4717 38 STEDVEKVVQVAHDHNLVIIP 58 (90)
Q Consensus 38 s~~~v~~vv~~a~~~~i~v~~ 58 (90)
+.+++.+++++|+++++.++.
T Consensus 171 ~~~~l~~i~~~a~~~~~~ii~ 191 (373)
T PRK07324 171 DRAYLEEIVEIARSVDAYVLS 191 (373)
T ss_pred CHHHHHHHHHHHHHCCCEEEE
Confidence 678999999999999986654
No 288
>PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed
Probab=39.37 E-value=41 Score=25.00 Aligned_cols=22 Identities=18% Similarity=0.388 Sum_probs=19.4
Q ss_pred cCCHHHHHHHHHHHHhCCCcEE
Q psy4717 36 TESTEDVEKVVQVAHDHNLVII 57 (90)
Q Consensus 36 P~s~~~v~~vv~~a~~~~i~v~ 57 (90)
|-+.+.++++.++|+++++.++
T Consensus 201 ~~~~~~l~~l~~l~~~~g~~lI 222 (403)
T PRK05093 201 PATPEFLQGLRELCDQHNALLI 222 (403)
T ss_pred cCCHHHHHHHHHHHHHcCCEEE
Confidence 4478999999999999999877
No 289
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).
Probab=39.24 E-value=72 Score=22.76 Aligned_cols=35 Identities=14% Similarity=0.347 Sum_probs=27.5
Q ss_pred CccEEEEc-CCHHHHHHHHHHHHhCCCc-----EEEEcCCC
Q psy4717 29 GTRYWCIT-ESTEDVEKVVQVAHDHNLV-----IIPFGGGT 63 (90)
Q Consensus 29 ~p~~vv~P-~s~~~v~~vv~~a~~~~i~-----v~~~G~G~ 63 (90)
.-..++.| .+.+++.++++++.+.++. ++|.|.|.
T Consensus 152 ~i~~v~~~g~n~~ei~~~~~~~~~~g~~~~~ie~~p~~~~~ 192 (302)
T TIGR02668 152 KLNMVVLKGINDNEIPDMVEFAAEGGAILQLIELMPPGEGE 192 (302)
T ss_pred EEEEEEeCCCCHHHHHHHHHHHHhcCCEEEEEEEeECCCCc
Confidence 34567889 9999999999999999875 44666553
No 290
>PRK13774 formimidoylglutamase; Provisional
Probab=39.23 E-value=19 Score=26.34 Aligned_cols=31 Identities=13% Similarity=0.242 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHhCCCcEEEEcCCCCCCCCc
Q psy4717 39 TEDVEKVVQVAHDHNLVIIPFGGGTNVTGAV 69 (90)
Q Consensus 39 ~~~v~~vv~~a~~~~i~v~~~G~G~n~~~~~ 69 (90)
.+.+++.++..-+.+.-.+.+||+|+++.+.
T Consensus 106 ~~~i~~~v~~i~~~g~~pivlGGdHsit~g~ 136 (311)
T PRK13774 106 QKEFAMLAAKSIANHRQTFLLGGGHDIAYAQ 136 (311)
T ss_pred HHHHHHHHHHHHHCCCeEEEEcCchHHHHHH
Confidence 4566666666666676567799999987654
No 291
>PLN00196 alpha-amylase; Provisional
Probab=39.05 E-value=43 Score=25.87 Aligned_cols=22 Identities=9% Similarity=0.353 Sum_probs=20.2
Q ss_pred CCHHHHHHHHHHHHhCCCcEEE
Q psy4717 37 ESTEDVEKVVQVAHDHNLVIIP 58 (90)
Q Consensus 37 ~s~~~v~~vv~~a~~~~i~v~~ 58 (90)
.|.+|++++++.|+++||.++.
T Consensus 89 Gt~~elk~Lv~~aH~~GIkVil 110 (428)
T PLN00196 89 GNEAQLKSLIEAFHGKGVQVIA 110 (428)
T ss_pred CCHHHHHHHHHHHHHCCCEEEE
Confidence 6889999999999999999865
No 292
>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines. Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.
Probab=39.03 E-value=71 Score=21.56 Aligned_cols=34 Identities=12% Similarity=0.177 Sum_probs=25.4
Q ss_pred CccEEE-EcCCHHHHHHHHHHHHhCCCcEEEEcCC
Q psy4717 29 GTRYWC-ITESTEDVEKVVQVAHDHNLVIIPFGGG 62 (90)
Q Consensus 29 ~p~~vv-~P~s~~~v~~vv~~a~~~~i~v~~~G~G 62 (90)
+++.++ .|.+.+...++++.+.+.++|++.++..
T Consensus 56 ~vdgiii~~~~~~~~~~~~~~l~~~~iPvv~~~~~ 90 (272)
T cd06301 56 GVDAIIVVPVDTAATAPIVKAANAAGIPLVYVNRR 90 (272)
T ss_pred CCCEEEEecCchhhhHHHHHHHHHCCCeEEEecCC
Confidence 366554 5766555678889899999999998753
No 293
>PRK07119 2-ketoisovalerate ferredoxin reductase; Validated
Probab=39.01 E-value=68 Score=24.02 Aligned_cols=34 Identities=12% Similarity=0.150 Sum_probs=27.7
Q ss_pred ccEEEEcCCHHHHH----HHHHHHHhCCCcEEEEcCCC
Q psy4717 30 TRYWCITESTEDVE----KVVQVAHDHNLVIIPFGGGT 63 (90)
Q Consensus 30 p~~vv~P~s~~~v~----~vv~~a~~~~i~v~~~G~G~ 63 (90)
+..++.|.|.+|.- .+.+++.+.++|++++.-|.
T Consensus 135 ~~~vl~p~~~qEa~d~~~~Af~lAE~~~~PViv~~D~~ 172 (352)
T PRK07119 135 RLIVLAPSSVQEMVDLTMLAFDLADKYRNPVMVLGDGV 172 (352)
T ss_pred ceEEEeCCCHHHHHHHHHHHHHHHHHhCCCEEEEcchh
Confidence 56799999999875 45567778999999998873
No 294
>PRK12474 hypothetical protein; Provisional
Probab=38.94 E-value=1e+02 Score=23.98 Aligned_cols=28 Identities=14% Similarity=0.252 Sum_probs=23.0
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEcCCCCC
Q psy4717 38 STEDVEKVVQVAHDHNLVIIPFGGGTNV 65 (90)
Q Consensus 38 s~~~v~~vv~~a~~~~i~v~~~G~G~n~ 65 (90)
+.+++.+++++.++.+-|++..|+|-..
T Consensus 187 ~~~~i~~~~~~L~~A~rPvil~G~g~~~ 214 (518)
T PRK12474 187 AAETVERIAALLRNGKKSALLLRGSALR 214 (518)
T ss_pred CHHHHHHHHHHHHcCCCcEEEECCccch
Confidence 4677888888888889999999888643
No 295
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=38.91 E-value=83 Score=21.22 Aligned_cols=37 Identities=14% Similarity=0.159 Sum_probs=32.6
Q ss_pred CccEEEEcCCHHHHHHHHHHHHhCCCcEEEEcCCCCC
Q psy4717 29 GTRYWCITESTEDVEKVVQVAHDHNLVIIPFGGGTNV 65 (90)
Q Consensus 29 ~p~~vv~P~s~~~v~~vv~~a~~~~i~v~~~G~G~n~ 65 (90)
..+.++..++-.|...++..+++.|..++.+|.....
T Consensus 105 ~iD~~vLvSgD~DF~~Lv~~lre~G~~V~v~g~~~~t 141 (160)
T TIGR00288 105 NIDAVALVTRDADFLPVINKAKENGKETIVIGAEPGF 141 (160)
T ss_pred CCCEEEEEeccHhHHHHHHHHHHCCCEEEEEeCCCCC
Confidence 4689999999999999999999999999999965433
No 296
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=38.85 E-value=1.1e+02 Score=20.05 Aligned_cols=52 Identities=15% Similarity=0.354 Sum_probs=33.1
Q ss_pred hHHHHHHHHhccCccccceeeec-C-ccEEEEcCCHHHHHHHHHHHHhCCCcEEE
Q psy4717 6 DVEKVVQVAHDHNLVVNHQAIFI-G-TRYWCITESTEDVEKVVQVAHDHNLVIIP 58 (90)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~-~-p~~vv~P~s~~~v~~vv~~a~~~~i~v~~ 58 (90)
.++|++.+..|++.+-++-.-.. . -.+++. -.++|+.++.+...+.|+++.+
T Consensus 82 ~l~~I~~vl~d~diNldYiYAFv~ek~KAlli-~r~ed~d~~~~aLed~gi~~~~ 135 (142)
T COG4747 82 GLSRIAEVLGDADINLDYIYAFVTEKQKALLI-VRVEDIDRAIKALEDAGIKLIG 135 (142)
T ss_pred cHHHHHHHHhhcCcCceeeeeeeecCceEEEE-EEhhHHHHHHHHHHHcCCeecC
Confidence 46788888888876644432222 1 222222 2457888888888899998864
No 297
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=38.82 E-value=1e+02 Score=21.74 Aligned_cols=36 Identities=11% Similarity=0.027 Sum_probs=30.4
Q ss_pred CccEEEEcCCHHHHHHHHHHHHhCCCcEEEEcCCCC
Q psy4717 29 GTRYWCITESTEDVEKVVQVAHDHNLVIIPFGGGTN 64 (90)
Q Consensus 29 ~p~~vv~P~s~~~v~~vv~~a~~~~i~v~~~G~G~n 64 (90)
.+++|+--.+.+...++++.|-++|++++.-..|.+
T Consensus 60 ~~DvVid~t~p~~~~~~~~~al~~G~~vvigttG~s 95 (257)
T PRK00048 60 DADVLIDFTTPEATLENLEFALEHGKPLVIGTTGFT 95 (257)
T ss_pred CCCEEEECCCHHHHHHHHHHHHHcCCCEEEECCCCC
Confidence 588999888999999999999999999996544544
No 298
>COG2921 Uncharacterized conserved protein [Function unknown]
Probab=38.47 E-value=96 Score=19.10 Aligned_cols=48 Identities=19% Similarity=0.129 Sum_probs=32.3
Q ss_pred hHHHHHHHHhccCccccceeeec-------CccEEEEcCCHHHHHHHHHHHHhCCC
Q psy4717 6 DVEKVVQVAHDHNLVVNHQAIFI-------GTRYWCITESTEDVEKVVQVAHDHNL 54 (90)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~-------~p~~vv~P~s~~~v~~vv~~a~~~~i 54 (90)
.+-++.| -|+.+.+..+-.++. +....+...+.||+..+-+..+++++
T Consensus 31 ~vv~vvq-r~ap~~~~~~~~~k~SSkGnY~svsI~i~A~~~EQ~e~ly~eL~~~~~ 85 (90)
T COG2921 31 QVVEVVQ-RHAPGDYTPRVSWKPSSKGNYLSVSITIRATNIEQVEALYRELRKHEI 85 (90)
T ss_pred HHHHHHH-HHCCcccCceeeeccCCCCceEEEEEEEEECCHHHHHHHHHHHhhCCc
Confidence 3444545 466655433333332 27788999999999999999888764
No 299
>PRK05899 transketolase; Reviewed
Probab=38.22 E-value=63 Score=25.95 Aligned_cols=32 Identities=3% Similarity=-0.199 Sum_probs=26.4
Q ss_pred cEEEEcCCHHHHHHHHHHHHhC-CCcEEEEcCC
Q psy4717 31 RYWCITESTEDVEKVVQVAHDH-NLVIIPFGGG 62 (90)
Q Consensus 31 ~~vv~P~s~~~v~~vv~~a~~~-~i~v~~~G~G 62 (90)
-.|+.|.+.+|+..++++|-+. +-|++++=..
T Consensus 453 ~~V~~P~d~~e~~~~l~~a~~~~~~P~~ir~~r 485 (624)
T PRK05899 453 LTVIRPADANETAAAWKYALERKDGPSALVLTR 485 (624)
T ss_pred cEEEeCCCHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 4579999999999999999987 6777776543
No 300
>cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=38.11 E-value=74 Score=21.51 Aligned_cols=34 Identities=12% Similarity=0.246 Sum_probs=24.9
Q ss_pred CccEEEE-cCCHHHHHHHHHHHHhCCCcEEEEcCC
Q psy4717 29 GTRYWCI-TESTEDVEKVVQVAHDHNLVIIPFGGG 62 (90)
Q Consensus 29 ~p~~vv~-P~s~~~v~~vv~~a~~~~i~v~~~G~G 62 (90)
.++.++. |.+.+...+.++.+.+.++|++.++..
T Consensus 57 ~vdgvii~~~~~~~~~~~l~~~~~~~ipvV~~~~~ 91 (273)
T cd06310 57 GPDAILLAPTDAKALVPPLKEAKDAGIPVVLIDSG 91 (273)
T ss_pred CCCEEEEcCCChhhhHHHHHHHHHCCCCEEEecCC
Confidence 3665554 666555677888888999999999653
No 301
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=38.08 E-value=1e+02 Score=21.70 Aligned_cols=33 Identities=9% Similarity=0.154 Sum_probs=26.5
Q ss_pred CccEEEEc-CCHHHHHHHHHHHHhCCCcEEEEcC
Q psy4717 29 GTRYWCIT-ESTEDVEKVVQVAHDHNLVIIPFGG 61 (90)
Q Consensus 29 ~p~~vv~P-~s~~~v~~vv~~a~~~~i~v~~~G~ 61 (90)
.+++|+-. .+.+.-..+.++|+++++|++--+|
T Consensus 102 ~~D~VvdaiD~~~~k~~L~~~c~~~~ip~I~s~g 135 (231)
T cd00755 102 DPDFVVDAIDSIRAKVALIAYCRKRKIPVISSMG 135 (231)
T ss_pred CCCEEEEcCCCHHHHHHHHHHHHHhCCCEEEEeC
Confidence 36777776 6777778899999999999987655
No 302
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=38.05 E-value=57 Score=22.18 Aligned_cols=34 Identities=15% Similarity=0.207 Sum_probs=24.6
Q ss_pred CccEEEE-cCCHHHHHHHHHHHHhCCCcEEEEcCC
Q psy4717 29 GTRYWCI-TESTEDVEKVVQVAHDHNLVIIPFGGG 62 (90)
Q Consensus 29 ~p~~vv~-P~s~~~v~~vv~~a~~~~i~v~~~G~G 62 (90)
+++.++. |...+.+.++++.+.+.++|++.++..
T Consensus 55 ~~Dgiii~~~~~~~~~~~i~~~~~~~iPvV~~~~~ 89 (282)
T cd06318 55 GVNVLIINPVDPEGLVPAVAAAKAAGVPVVVVDSS 89 (282)
T ss_pred CCCEEEEecCCccchHHHHHHHHHCCCCEEEecCC
Confidence 3666554 544555667788888999999999763
No 303
>PLN02721 threonine aldolase
Probab=37.70 E-value=45 Score=23.75 Aligned_cols=23 Identities=35% Similarity=0.349 Sum_probs=19.4
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEc
Q psy4717 38 STEDVEKVVQVAHDHNLVIIPFG 60 (90)
Q Consensus 38 s~~~v~~vv~~a~~~~i~v~~~G 60 (90)
+.+++.++.++|+++++.++.=+
T Consensus 156 ~~~~l~~l~~l~~~~g~~livD~ 178 (353)
T PLN02721 156 SVEYTDKVGELAKRHGLKLHIDG 178 (353)
T ss_pred cHHHHHHHHHHHHHcCCEEEEEc
Confidence 35779999999999999987754
No 304
>PRK00002 aroB 3-dehydroquinate synthase; Reviewed
Probab=37.63 E-value=52 Score=24.39 Aligned_cols=29 Identities=31% Similarity=0.499 Sum_probs=23.2
Q ss_pred CCHHHHHHHHHHHHhCCC----cEEEEcCCCCC
Q psy4717 37 ESTEDVEKVVQVAHDHNL----VIIPFGGGTNV 65 (90)
Q Consensus 37 ~s~~~v~~vv~~a~~~~i----~v~~~G~G~n~ 65 (90)
.+.+.+.++++.+.+.++ -++.+|||+-+
T Consensus 73 ~~~~~v~~~~~~~~~~~~~r~d~IIavGGGsv~ 105 (358)
T PRK00002 73 KSLETLEKIYDALLEAGLDRSDTLIALGGGVIG 105 (358)
T ss_pred CCHHHHHHHHHHHHHcCCCCCCEEEEEcCcHHH
Confidence 478999999999988764 48889998754
No 305
>TIGR03405 Phn_Fe-ADH phosphonate metabolism-associated iron-containing alcohol dehydrogenase. 2-hydroxyethylphosphonate (2-HEP), the presumed product of the reaction of Pald with an alcohol dehydrogenase, is a biologically novel but reasonable analog of 2-AEP and may be a constituent of as-yet undescribed natural products. In the case of Azoarcus, downstream of the dehydrogenase is a CDP-glycerol:glycerophosphate transferase homolog that may indicate the existence of a pathway for 2-HEP-derived phosphonolipid biosynthesis.
Probab=37.46 E-value=54 Score=24.31 Aligned_cols=28 Identities=14% Similarity=0.413 Sum_probs=22.9
Q ss_pred CHHHHHHHHHHHHhCC--C-cEEEEcCCCCC
Q psy4717 38 STEDVEKVVQVAHDHN--L-VIIPFGGGTNV 65 (90)
Q Consensus 38 s~~~v~~vv~~a~~~~--i-~v~~~G~G~n~ 65 (90)
+.+.|.++++++++.+ . -++.+||||-+
T Consensus 63 t~~~v~~~~~~~~~~~~~~D~IIaiGGGSvi 93 (355)
T TIGR03405 63 DVAQLDGLYARLWGDEGACDLVIALGGGSVI 93 (355)
T ss_pred CHHHHHHHHHHHHhcCCCCCEEEEeCCccHH
Confidence 4688999999998876 3 58899999965
No 306
>PRK14469 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=37.43 E-value=1.3e+02 Score=22.25 Aligned_cols=61 Identities=15% Similarity=0.195 Sum_probs=36.7
Q ss_pred chhHHHHHHHHhccCccccceeeecC--ccEEEEcCCHHHHHHHHHHHHhCCCcEEEE-cCCCCCCC
Q psy4717 4 TEDVEKVVQVAHDHNLVVNHQAIFIG--TRYWCITESTEDVEKVVQVAHDHNLVIIPF-GGGTNVTG 67 (90)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~--p~~vv~P~s~~~v~~vv~~a~~~~i~v~~~-G~G~n~~~ 67 (90)
-++++.+++...+..... +..... +. =+.+.+.+++.++.+...++++++.++ ..|..+.+
T Consensus 266 ~ed~~~La~llk~~~~~V--nLIpynp~~~-~~~~ps~e~l~~f~~~l~~~gi~vtvr~~~g~di~a 329 (343)
T PRK14469 266 IEDAKKLAELLKGLKVFV--NLIPVNPTVP-GLEKPSRERIERFKEILLKNGIEAEIRREKGSDIEA 329 (343)
T ss_pred HHHHHHHHHHHhccCcEE--EEEecCCCCc-cCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCcchhh
Confidence 456777777554442111 111111 12 245667888888888888899988887 44665543
No 307
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=37.37 E-value=81 Score=21.33 Aligned_cols=34 Identities=21% Similarity=0.386 Sum_probs=25.4
Q ss_pred CccEEEE-cCCHHHHHHHHHHHHhCCCcEEEEcCC
Q psy4717 29 GTRYWCI-TESTEDVEKVVQVAHDHNLVIIPFGGG 62 (90)
Q Consensus 29 ~p~~vv~-P~s~~~v~~vv~~a~~~~i~v~~~G~G 62 (90)
.++.++. |.+.+.+.+.++.+++.++|++.+...
T Consensus 60 ~vdgiIi~~~~~~~~~~~l~~~~~~~iPvv~~~~~ 94 (272)
T cd06300 60 GVDAIIINPASPTALNPVIEEACEAGIPVVSFDGT 94 (272)
T ss_pred CCCEEEEeCCChhhhHHHHHHHHHCCCeEEEEecC
Confidence 3666666 555565677888899999999998753
No 308
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=37.36 E-value=67 Score=23.17 Aligned_cols=29 Identities=10% Similarity=0.225 Sum_probs=24.7
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEEcCCCCC
Q psy4717 37 ESTEDVEKVVQVAHDHNLVIIPFGGGTNV 65 (90)
Q Consensus 37 ~s~~~v~~vv~~a~~~~i~v~~~G~G~n~ 65 (90)
....++.++++.|++.|++++.+.+..+-
T Consensus 105 G~t~~~~~~~~~ak~~g~~vi~iT~~~~s 133 (326)
T PRK10892 105 GESSEILALIPVLKRLHVPLICITGRPES 133 (326)
T ss_pred CCCHHHHHHHHHHHHCCCcEEEEECCCCC
Confidence 45799999999999999999999876543
No 309
>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=37.35 E-value=82 Score=21.80 Aligned_cols=34 Identities=18% Similarity=0.238 Sum_probs=25.9
Q ss_pred CccEEE-EcCCHHHHHHHHHHHHhCCCcEEEEcCC
Q psy4717 29 GTRYWC-ITESTEDVEKVVQVAHDHNLVIIPFGGG 62 (90)
Q Consensus 29 ~p~~vv-~P~s~~~v~~vv~~a~~~~i~v~~~G~G 62 (90)
+++.++ .|.+.+.+...++.+.+.++|++.++..
T Consensus 55 ~vdgiii~~~~~~~~~~~l~~l~~~~ipvV~~~~~ 89 (288)
T cd01538 55 GVDVLVIAPVDGEALASAVEKAADAGIPVIAYDRL 89 (288)
T ss_pred CCCEEEEecCChhhHHHHHHHHHHCCCCEEEECCC
Confidence 466555 4656666788888899999999999764
No 310
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=37.33 E-value=79 Score=23.03 Aligned_cols=36 Identities=17% Similarity=0.122 Sum_probs=32.1
Q ss_pred cCccEEEEcCCHHHHHHHHHHHHhCCCcEEEEcCCC
Q psy4717 28 IGTRYWCITESTEDVEKVVQVAHDHNLVIIPFGGGT 63 (90)
Q Consensus 28 ~~p~~vv~P~s~~~v~~vv~~a~~~~i~v~~~G~G~ 63 (90)
..++.++...|.+.|.+.+.-+-+.|+.+++.+-|-
T Consensus 59 ~~~DlvVEaAS~~Av~e~~~~~L~~g~d~iV~SVGA 94 (255)
T COG1712 59 AEVDLVVEAASPEAVREYVPKILKAGIDVIVMSVGA 94 (255)
T ss_pred hccceeeeeCCHHHHHHHhHHHHhcCCCEEEEechh
Confidence 358999999999999999999999999999988765
No 311
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=37.32 E-value=74 Score=21.54 Aligned_cols=29 Identities=14% Similarity=0.357 Sum_probs=24.3
Q ss_pred EcCCHHHHHHHHHHHHhCCCcEEEEcCCC
Q psy4717 35 ITESTEDVEKVVQVAHDHNLVIIPFGGGT 63 (90)
Q Consensus 35 ~P~s~~~v~~vv~~a~~~~i~v~~~G~G~ 63 (90)
......++.++++.|+++|++++.+.+-.
T Consensus 120 ~SG~t~~~i~~~~~ak~~g~~iI~iT~~~ 148 (192)
T PRK00414 120 TSGNSGNIIKAIEAARAKGMKVITLTGKD 148 (192)
T ss_pred CCCCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 34467999999999999999999997743
No 312
>PLN02361 alpha-amylase
Probab=37.29 E-value=47 Score=25.47 Aligned_cols=22 Identities=9% Similarity=0.129 Sum_probs=19.9
Q ss_pred CCHHHHHHHHHHHHhCCCcEEE
Q psy4717 37 ESTEDVEKVVQVAHDHNLVIIP 58 (90)
Q Consensus 37 ~s~~~v~~vv~~a~~~~i~v~~ 58 (90)
.|.+|++++++.|+++|+.++.
T Consensus 73 Gt~~el~~li~~~h~~gi~vi~ 94 (401)
T PLN02361 73 GSEHLLKSLLRKMKQYNVRAMA 94 (401)
T ss_pred CCHHHHHHHHHHHHHcCCEEEE
Confidence 5789999999999999998765
No 313
>PRK09082 methionine aminotransferase; Validated
Probab=37.28 E-value=41 Score=24.76 Aligned_cols=21 Identities=14% Similarity=0.338 Sum_probs=17.9
Q ss_pred CHHHHHHHHHHHHhCCCcEEE
Q psy4717 38 STEDVEKVVQVAHDHNLVIIP 58 (90)
Q Consensus 38 s~~~v~~vv~~a~~~~i~v~~ 58 (90)
+.+++.+++++|+++++.++.
T Consensus 181 ~~~~~~~i~~~a~~~~i~li~ 201 (386)
T PRK09082 181 SAADMRALWQLIAGTDIYVLS 201 (386)
T ss_pred CHHHHHHHHHHHHHCCEEEEE
Confidence 359999999999999987663
No 314
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=37.14 E-value=40 Score=21.49 Aligned_cols=25 Identities=8% Similarity=0.274 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHhCCCcEEEEcCCCC
Q psy4717 40 EDVEKVVQVAHDHNLVIIPFGGGTN 64 (90)
Q Consensus 40 ~~v~~vv~~a~~~~i~v~~~G~G~n 64 (90)
..+.++++.++++|+++.+.++|..
T Consensus 76 ~g~~~~l~~l~~~g~~~~ivS~~~~ 100 (177)
T TIGR01488 76 PGARELISWLKERGIDTVIVSGGFD 100 (177)
T ss_pred cCHHHHHHHHHHCCCEEEEECCCcH
Confidence 5677888899999999999999875
No 315
>PRK13773 formimidoylglutamase; Provisional
Probab=37.13 E-value=27 Score=25.70 Aligned_cols=31 Identities=19% Similarity=0.278 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHhCCCcEEEEcCCCCCCCCc
Q psy4717 39 TEDVEKVVQVAHDHNLVIIPFGGGTNVTGAV 69 (90)
Q Consensus 39 ~~~v~~vv~~a~~~~i~v~~~G~G~n~~~~~ 69 (90)
.+.+++.++..-+.+.-.+.+||+|+++.+.
T Consensus 105 ~~~i~~~v~~~~~~g~~PivLGGdHsit~g~ 135 (324)
T PRK13773 105 QERLGDAVSALLDAGHLPVVLGGGHETAFGS 135 (324)
T ss_pred HHHHHHHHHHHHHCCCeeEEECCchHHHHHh
Confidence 3556777766666665557799999987544
No 316
>cd06348 PBP1_ABC_ligand_binding_like_13 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=37.11 E-value=1.1e+02 Score=21.79 Aligned_cols=33 Identities=15% Similarity=0.153 Sum_probs=27.9
Q ss_pred CccEEEEcCCHHHHHHHHHHHHhCCCcEEEEcC
Q psy4717 29 GTRYWCITESTEDVEKVVQVAHDHNLVIIPFGG 61 (90)
Q Consensus 29 ~p~~vv~P~s~~~v~~vv~~a~~~~i~v~~~G~ 61 (90)
+|++|+.....++...+++.+++.++....+|+
T Consensus 192 ~~d~vi~~~~~~~~~~~~~~~~~~g~~~~~~~~ 224 (344)
T cd06348 192 KPDLIVISALAADGGNLVRQLRELGYNGLIVGG 224 (344)
T ss_pred CCCEEEECCcchhHHHHHHHHHHcCCCCceecc
Confidence 499999999999999999999999886555543
No 317
>PF03614 Flag1_repress: Repressor of phase-1 flagellin; InterPro: IPR003223 Flagellin is the subunit which polymerises to form the filaments of bacterial flagella. The proteins in this family are transcriptional repressors of phase-1 flagellin genes.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent
Probab=37.05 E-value=54 Score=22.24 Aligned_cols=30 Identities=7% Similarity=-0.062 Sum_probs=26.2
Q ss_pred EEEEcCCHHHHHHHHHHHHhCCCcEEEEcC
Q psy4717 32 YWCITESTEDVEKVVQVAHDHNLVIIPFGG 61 (90)
Q Consensus 32 ~vv~P~s~~~v~~vv~~a~~~~i~v~~~G~ 61 (90)
+=++|+.-+-++..+++.+.+++|+.+...
T Consensus 8 AEvwprdys~ler~l~f~r~~~~pVrvv~~ 37 (165)
T PF03614_consen 8 AEVWPRDYSMLERRLQFWRFNDIPVRVVSE 37 (165)
T ss_pred cccCcchHHHHHHHHHHHHhcCCceEEEec
Confidence 348999999999999999999999987643
No 318
>cd06307 PBP1_uncharacterized_sugar_binding Periplasmic sugar-binding domain of uncharacterized transport systems. Periplasmic sugar-binding domain of uncharacterized transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. The members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes.
Probab=36.96 E-value=86 Score=21.30 Aligned_cols=34 Identities=6% Similarity=0.055 Sum_probs=25.5
Q ss_pred CccEEE-EcCCHHHHHHHHHHHHhCCCcEEEEcCC
Q psy4717 29 GTRYWC-ITESTEDVEKVVQVAHDHNLVIIPFGGG 62 (90)
Q Consensus 29 ~p~~vv-~P~s~~~v~~vv~~a~~~~i~v~~~G~G 62 (90)
+++.++ .|.+.++..+.++.+.+.++|++.++..
T Consensus 58 ~vdgiii~~~~~~~~~~~i~~~~~~~ipvV~~~~~ 92 (275)
T cd06307 58 RSDGVALVAPDHPQVRAAVARLAAAGVPVVTLVSD 92 (275)
T ss_pred cCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEeCC
Confidence 566554 4666666677889999999999988754
No 319
>PF09413 DUF2007: Domain of unknown function (DUF2007); InterPro: IPR018551 This is a family of proteins with unknown function. ; PDB: 2HFV_A.
Probab=36.72 E-value=75 Score=17.38 Aligned_cols=34 Identities=3% Similarity=-0.043 Sum_probs=20.7
Q ss_pred EEEcCCHHHHHHHHHHHHhCCCcEEEEcCCCCCC
Q psy4717 33 WCITESTEDVEKVVQVAHDHNLVIIPFGGGTNVT 66 (90)
Q Consensus 33 vv~P~s~~~v~~vv~~a~~~~i~v~~~G~G~n~~ 66 (90)
+++..+.-++.-+-....++||+.+.++.+.+-.
T Consensus 3 l~~~~~~~ea~~i~~~L~~~gI~~~v~~~~~~~~ 36 (67)
T PF09413_consen 3 LYTAGDPIEAELIKGLLEENGIPAFVKNEHMSGY 36 (67)
T ss_dssp EEEE--HHHHHHHHHHHHHTT--EE--S----SS
T ss_pred EEEcCCHHHHHHHHHHHHhCCCcEEEECCccchh
Confidence 5677788888999999999999999999887665
No 320
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=36.69 E-value=48 Score=26.22 Aligned_cols=22 Identities=27% Similarity=0.401 Sum_probs=20.1
Q ss_pred CCHHHHHHHHHHHHhCCCcEEE
Q psy4717 37 ESTEDVEKVVQVAHDHNLVIIP 58 (90)
Q Consensus 37 ~s~~~v~~vv~~a~~~~i~v~~ 58 (90)
.+.+|++++++.|+++|+.++.
T Consensus 72 Gt~~~~~~lv~~ah~~gi~vil 93 (543)
T TIGR02403 72 GTMADFEELVSEAKKRNIKIML 93 (543)
T ss_pred CCHHHHHHHHHHHHHCCCEEEE
Confidence 6889999999999999998775
No 321
>cd06361 PBP1_GPC6A_like Ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor. This family includes the ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor, and its fish homolog, the 5.24 chemoreceptor. GPRC6A is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into cellular responses.
Probab=36.53 E-value=63 Score=24.21 Aligned_cols=34 Identities=9% Similarity=-0.048 Sum_probs=30.0
Q ss_pred cCccEEEEcCCHHHHHHHHHHHHhCCCcEEEEcC
Q psy4717 28 IGTRYWCITESTEDVEKVVQVAHDHNLVIIPFGG 61 (90)
Q Consensus 28 ~~p~~vv~P~s~~~v~~vv~~a~~~~i~v~~~G~ 61 (90)
..|++|+...+.+++..+++.+++.++....+|+
T Consensus 233 ~~a~vVvv~~~~~~~~~l~~~a~~~g~~~~wigs 266 (403)
T cd06361 233 NKVNVIVVFARQFHVFLLFNKAIERNINKVWIAS 266 (403)
T ss_pred CCCeEEEEEeChHHHHHHHHHHHHhCCCeEEEEE
Confidence 4599999999999999999999999998777754
No 322
>TIGR02064 dsrA sulfite reductase, dissimilatory-type alpha subunit. This model describes the alpha subunit of sulfite reductase.
Probab=36.46 E-value=1.8e+02 Score=22.48 Aligned_cols=62 Identities=11% Similarity=0.093 Sum_probs=39.3
Q ss_pred cchhHHHHHHHHhccCccccceeeec-CccEEEEcCCHHHHHHHHHHHHhCCCcEEEEcCCCCCCCC
Q psy4717 3 STEDVEKVVQVAHDHNLVVNHQAIFI-GTRYWCITESTEDVEKVVQVAHDHNLVIIPFGGGTNVTGA 68 (90)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~vv~P~s~~~v~~vv~~a~~~~i~v~~~G~G~n~~~~ 68 (90)
|++.+.+|+..+-.+..- ...++. +-+.++.=-+.+++.++++...+.|+++ -|.|+++...
T Consensus 95 tteqLR~LaDiaekYGsG--~~~~tgstqdIiL~gv~~e~le~i~~eL~~~G~dl--ggsG~~vRti 157 (402)
T TIGR02064 95 STDYLRQLCDVWEKYGSG--LTNFHGQTGDIVFLGTQTPQLQEIFEELTNLGTDL--GGSGSNLRTP 157 (402)
T ss_pred CHHHHHHHHHHHHHhCCC--EEEEeccccCEEEcCCCHHHHHHHHHHHhhcccCC--CCCCCCccce
Confidence 778899888866444311 011222 2366666668899999999988887654 3556665433
No 323
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=36.40 E-value=51 Score=20.72 Aligned_cols=36 Identities=11% Similarity=0.087 Sum_probs=30.7
Q ss_pred CccEEEEcCCHHHHHHHHHHHHhCCCcEEEEcCCCC
Q psy4717 29 GTRYWCITESTEDVEKVVQVAHDHNLVIIPFGGGTN 64 (90)
Q Consensus 29 ~p~~vv~P~s~~~v~~vv~~a~~~~i~v~~~G~G~n 64 (90)
.++.++.-+.=.|...+++.++++|..+...|-...
T Consensus 99 ~~d~ivLvSgD~Df~~~i~~lr~~G~~V~v~~~~~~ 134 (149)
T cd06167 99 RIDTIVLVSGDSDFVPLVERLRELGKRVIVVGFEAK 134 (149)
T ss_pred CCCEEEEEECCccHHHHHHHHHHcCCEEEEEccCcc
Confidence 477888888888999999999999999999887633
No 324
>PRK13776 formimidoylglutamase; Provisional
Probab=36.34 E-value=27 Score=25.72 Aligned_cols=30 Identities=23% Similarity=0.288 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHhCCCcEEEEcCCCCCCCCc
Q psy4717 40 EDVEKVVQVAHDHNLVIIPFGGGTNVTGAV 69 (90)
Q Consensus 40 ~~v~~vv~~a~~~~i~v~~~G~G~n~~~~~ 69 (90)
+.+++.++...+.+.-.+.+||+|+++.+.
T Consensus 104 ~~i~~~v~~i~~~g~~Pi~lGGdHsit~g~ 133 (318)
T PRK13776 104 SRYAQRVHDLLDRGHLPIGLGGGHEIAWAS 133 (318)
T ss_pred HHHHHHHHHHHhCCCeEEEEcCchHHHHHh
Confidence 455555655556666667799999997553
No 325
>PRK06203 aroB 3-dehydroquinate synthase; Reviewed
Probab=36.25 E-value=47 Score=25.22 Aligned_cols=31 Identities=19% Similarity=0.427 Sum_probs=24.8
Q ss_pred EcCCH-HHHHHHHHHHHhCCC----cEEEEcCCCCC
Q psy4717 35 ITEST-EDVEKVVQVAHDHNL----VIIPFGGGTNV 65 (90)
Q Consensus 35 ~P~s~-~~v~~vv~~a~~~~i----~v~~~G~G~n~ 65 (90)
.+++. +.+.++++.+.+.+. .++.+|||+-+
T Consensus 89 ~~k~~~~~v~~i~~~~~~~~~dr~d~IIaiGGGsv~ 124 (389)
T PRK06203 89 AAKNDPALVEALHAAINRHGIDRHSYVLAIGGGAVL 124 (389)
T ss_pred cCCCcHHHHHHHHHHHHHcCCCCCceEEEeCCcHHH
Confidence 45565 668999999988876 69999999865
No 326
>cd06351 PBP1_iGluR_N_LIVBP_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NMDA, AMPA, and kainate receptor subtypes of ionotropic glutamate receptors (iGluRs). N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NMDA, AMPA, and kainate receptor subtypes of ionotropic glutamate receptors (iGluRs). While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Glutamate mediates the majority of excitatory synaptic transmission in the central nervous system via two broad classes of ionotropic receptors characterized by their response to glutamate agonists: N-methyl-aspartate (NMDA) and non-NMDA receptors
Probab=36.18 E-value=73 Score=22.09 Aligned_cols=38 Identities=18% Similarity=0.214 Sum_probs=32.7
Q ss_pred cCccEEEEcCCHHHHHHHHHHHHhCCCcEEEEcCCCCC
Q psy4717 28 IGTRYWCITESTEDVEKVVQVAHDHNLVIIPFGGGTNV 65 (90)
Q Consensus 28 ~~p~~vv~P~s~~~v~~vv~~a~~~~i~v~~~G~G~n~ 65 (90)
.+..+|+=|.+......+..+|...++|++..+..+..
T Consensus 62 ~~v~ai~G~~~s~~~~~v~~~~~~~~iP~is~~~~~~~ 99 (328)
T cd06351 62 QGVAAIFGPTSSESASAVQSICDALEIPHISISGGSEG 99 (328)
T ss_pred cCcEEEECCCCHHHHHHHHHHhccCCCCeEEeecCccc
Confidence 45788999999999999999999999999998776654
No 327
>PRK05583 ribosomal protein L7Ae family protein; Provisional
Probab=35.97 E-value=71 Score=19.76 Aligned_cols=34 Identities=12% Similarity=0.017 Sum_probs=27.1
Q ss_pred CccEEEEcCCHHH--HHHHHHHHHhCCCcEEEEcCC
Q psy4717 29 GTRYWCITESTED--VEKVVQVAHDHNLVIIPFGGG 62 (90)
Q Consensus 29 ~p~~vv~P~s~~~--v~~vv~~a~~~~i~v~~~G~G 62 (90)
.+..|+.+.+..+ -.++..+|+.+++|++-++..
T Consensus 33 k~~lVI~A~D~s~~~kkki~~~~~~~~vp~~~~~t~ 68 (104)
T PRK05583 33 KVYLIIISNDISENSKNKFKNYCNKYNIPYIEGYSK 68 (104)
T ss_pred CceEEEEeCCCCHhHHHHHHHHHHHcCCCEEEecCH
Confidence 3777888877644 789999999999999888543
No 328
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=35.93 E-value=48 Score=20.32 Aligned_cols=24 Identities=4% Similarity=0.126 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHhCCCcEEEEcCCC
Q psy4717 40 EDVEKVVQVAHDHNLVIIPFGGGT 63 (90)
Q Consensus 40 ~~v~~vv~~a~~~~i~v~~~G~G~ 63 (90)
.++.++++.+++.|+++.+.+++.
T Consensus 28 ~~v~~~l~~L~~~g~~l~i~Sn~~ 51 (132)
T TIGR01662 28 PEVPDALAELKEAGYKVVIVTNQS 51 (132)
T ss_pred CCHHHHHHHHHHCCCEEEEEECCc
Confidence 456778999999999999999876
No 329
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=35.75 E-value=53 Score=24.08 Aligned_cols=29 Identities=24% Similarity=0.536 Sum_probs=21.2
Q ss_pred CCHHHHHHHHHHHHhCCCcEEE--EcCCCCC
Q psy4717 37 ESTEDVEKVVQVAHDHNLVIIP--FGGGTNV 65 (90)
Q Consensus 37 ~s~~~v~~vv~~a~~~~i~v~~--~G~G~n~ 65 (90)
+..+++.++.+.|+++|+|++. +..|..+
T Consensus 127 ~~i~~~~~v~~~a~~~Gmp~v~~~YpRg~~~ 157 (265)
T COG1830 127 EMIENISQVVEDAHELGMPLVAWAYPRGPAI 157 (265)
T ss_pred HHHHHHHHHHHHHHHcCCceEEEEeccCCcc
Confidence 3457788899999999999765 4445444
No 330
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=35.71 E-value=52 Score=24.43 Aligned_cols=28 Identities=25% Similarity=0.641 Sum_probs=21.0
Q ss_pred CHHHHHHHHHHHHhCCCc-EEEEcCCCCC
Q psy4717 38 STEDVEKVVQVAHDHNLV-IIPFGGGTNV 65 (90)
Q Consensus 38 s~~~v~~vv~~a~~~~i~-v~~~G~G~n~ 65 (90)
+.+.|.++++.+++++.- ++.+|||+-+
T Consensus 69 ~~~~v~~~~~~~~~~~~d~IIavGGGsv~ 97 (366)
T PRK09423 69 SDNEIDRLVAIAEENGCDVVIGIGGGKTL 97 (366)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEecChHHH
Confidence 457888888888887764 6668888754
No 331
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=35.66 E-value=51 Score=26.16 Aligned_cols=22 Identities=27% Similarity=0.431 Sum_probs=19.8
Q ss_pred CCHHHHHHHHHHHHhCCCcEEE
Q psy4717 37 ESTEDVEKVVQVAHDHNLVIIP 58 (90)
Q Consensus 37 ~s~~~v~~vv~~a~~~~i~v~~ 58 (90)
.+.+|++++|+.|+++||.|+.
T Consensus 157 G~~~e~k~lV~~aH~~Gi~Vil 178 (542)
T TIGR02402 157 GGPDDLKALVDAAHGLGLGVIL 178 (542)
T ss_pred CCHHHHHHHHHHHHHCCCEEEE
Confidence 4679999999999999999875
No 332
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=35.63 E-value=1.4e+02 Score=21.76 Aligned_cols=42 Identities=12% Similarity=0.256 Sum_probs=31.3
Q ss_pred ecCccEEEEcCCHHHHHHHHHHHHhCCCcEEEEcCCCCCCCCcc
Q psy4717 27 FIGTRYWCITESTEDVEKVVQVAHDHNLVIIPFGGGTNVTGAVA 70 (90)
Q Consensus 27 ~~~p~~vv~P~s~~~v~~vv~~a~~~~i~v~~~G~G~n~~~~~~ 70 (90)
..++.+++.+.-..++.+.+ +.+-.+|++=+|.|....|+-+
T Consensus 171 ~AGA~~ivlE~vp~~~a~~I--t~~l~iP~iGIGaG~~~dGQvl 212 (263)
T TIGR00222 171 EAGAQLLVLECVPVELAAKI--TEALAIPVIGIGAGNVCDGQIL 212 (263)
T ss_pred HcCCCEEEEcCCcHHHHHHH--HHhCCCCEEeeccCCCCCceee
Confidence 35788888888887665554 5677899999999998755443
No 333
>TIGR00789 flhB_rel flhB C-terminus-related protein. This model describes a short protein (80-93 residues) homologous to the C-terminus of the flagellar biosynthetic protein FlhB. It is found so far only in species that also have FlhB. In a phylogenetic tree based on alignment of both this family and the homologous region of FlhB and its homologs, the members of this family form a monophyletic set.
Probab=35.42 E-value=76 Score=18.93 Aligned_cols=28 Identities=18% Similarity=0.364 Sum_probs=19.7
Q ss_pred ccEEEEcCCHHHHHHHHHHHHhCCCcEEE
Q psy4717 30 TRYWCITESTEDVEKVVQVAHDHNLVIIP 58 (90)
Q Consensus 30 p~~vv~P~s~~~v~~vv~~a~~~~i~v~~ 58 (90)
|..+.. ..-+...++++.|+++++|++-
T Consensus 18 P~VvAK-G~g~~A~~I~~~A~e~~VPi~~ 45 (82)
T TIGR00789 18 PKVVAS-GVGEVAERIIEIAKKHGIPIVE 45 (82)
T ss_pred CEEEEE-eCCHHHHHHHHHHHHcCCCEEe
Confidence 444333 3445667899999999999863
No 334
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=35.35 E-value=71 Score=22.46 Aligned_cols=29 Identities=10% Similarity=0.101 Sum_probs=24.7
Q ss_pred EcCCHHHHHHHHHHHHhCCCcEEEEcCCC
Q psy4717 35 ITESTEDVEKVVQVAHDHNLVIIPFGGGT 63 (90)
Q Consensus 35 ~P~s~~~v~~vv~~a~~~~i~v~~~G~G~ 63 (90)
..+..+++.++++.|+++|++++.+.+..
T Consensus 184 ~sg~~~~~~~~~~~ak~~ga~iI~IT~~~ 212 (278)
T PRK11557 184 YSGERRELNLAADEALRVGAKVLAITGFT 212 (278)
T ss_pred CCCCCHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 44567899999999999999999998754
No 335
>PRK07309 aromatic amino acid aminotransferase; Validated
Probab=35.28 E-value=51 Score=24.35 Aligned_cols=21 Identities=14% Similarity=0.322 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHhCCCcEEEE
Q psy4717 39 TEDVEKVVQVAHDHNLVIIPF 59 (90)
Q Consensus 39 ~~~v~~vv~~a~~~~i~v~~~ 59 (90)
.+++.+++++|+++++.++.=
T Consensus 185 ~~~~~~l~~~~~~~~~~ii~D 205 (391)
T PRK07309 185 REQIKALADVLKKYDIFVISD 205 (391)
T ss_pred HHHHHHHHHHHHHcCcEEEEE
Confidence 589999999999999877643
No 336
>PF12694 MoCo_carrier: Putative molybdenum carrier; InterPro: IPR024755 The structure of proteins in this family contain central beta strands with flanking alpha helices. The structure is similar to that of a molybdenum cofactor carrier protein.; PDB: 3IMK_A.
Probab=35.22 E-value=55 Score=21.86 Aligned_cols=32 Identities=16% Similarity=0.209 Sum_probs=23.4
Q ss_pred ccEEEEcCCHHHHHHHHHHHHhCCCcEEEEcC
Q psy4717 30 TRYWCITESTEDVEKVVQVAHDHNLVIIPFGG 61 (90)
Q Consensus 30 p~~vv~P~s~~~v~~vv~~a~~~~i~v~~~G~ 61 (90)
|-+++.+...+++..+.+|+.++++.+.-..|
T Consensus 92 P~l~i~~~~~~~~~~v~~wl~~~~i~vLNVAG 123 (145)
T PF12694_consen 92 PCLHIDLSIPEAAAAVAEWLREHNIRVLNVAG 123 (145)
T ss_dssp -EEEETS-HHHHHHHHHHHHHHTT--EEEEE-
T ss_pred CEEEEecCcccHHHHHHHHHHHCCceEEEecc
Confidence 77778888889999999999999998877655
No 337
>PF10096 DUF2334: Uncharacterized protein conserved in bacteria (DUF2334); InterPro: IPR018763 This group of proteins has no known function.
Probab=35.20 E-value=50 Score=23.32 Aligned_cols=20 Identities=5% Similarity=0.135 Sum_probs=11.3
Q ss_pred CCHHHHHHHHHHHHhCCCcE
Q psy4717 37 ESTEDVEKVVQVAHDHNLVI 56 (90)
Q Consensus 37 ~s~~~v~~vv~~a~~~~i~v 56 (90)
.+.+.+.++.+++.++++|+
T Consensus 13 ~~~~~l~~i~d~l~~~~ipf 32 (243)
T PF10096_consen 13 SDLEKLKEIADYLYKYGIPF 32 (243)
T ss_pred CCHHHHHHHHHHHHHCCCCE
Confidence 45555555555555555553
No 338
>PRK13237 tyrosine phenol-lyase; Provisional
Probab=35.10 E-value=49 Score=26.02 Aligned_cols=26 Identities=12% Similarity=0.153 Sum_probs=21.8
Q ss_pred EcCCHHHHHHHHHHHHhCCCcEEEEc
Q psy4717 35 ITESTEDVEKVVQVAHDHNLVIIPFG 60 (90)
Q Consensus 35 ~P~s~~~v~~vv~~a~~~~i~v~~~G 60 (90)
+|-+.+++.++.++|+++|++++-=+
T Consensus 193 qpvs~~~m~~I~elA~~~Gl~Vi~Da 218 (460)
T PRK13237 193 QPVSMANMRAVRELCDKHGIKVFFDA 218 (460)
T ss_pred eeCCHHhHHHHHHHHHHcCCEEEEEC
Confidence 55567899999999999999997544
No 339
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=35.00 E-value=49 Score=21.20 Aligned_cols=23 Identities=13% Similarity=0.382 Sum_probs=19.9
Q ss_pred HHHHHHHHHHhCCCcEEEEcCCC
Q psy4717 41 DVEKVVQVAHDHNLVIIPFGGGT 63 (90)
Q Consensus 41 ~v~~vv~~a~~~~i~v~~~G~G~ 63 (90)
++.++++.+++.++++.+.++|.
T Consensus 76 g~~~ll~~l~~~g~~~~i~S~~~ 98 (188)
T TIGR01489 76 GFKEFIAFIKEHGIDFIVISDGN 98 (188)
T ss_pred cHHHHHHHHHHcCCcEEEEeCCc
Confidence 37778889999999999999886
No 340
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=34.98 E-value=67 Score=23.72 Aligned_cols=22 Identities=23% Similarity=0.477 Sum_probs=18.3
Q ss_pred CHHHHHHHHHHHHhCCCcEEEE
Q psy4717 38 STEDVEKVVQVAHDHNLVIIPF 59 (90)
Q Consensus 38 s~~~v~~vv~~a~~~~i~v~~~ 59 (90)
+..++.++.++|+++++.++.=
T Consensus 151 ~~~dl~~I~~la~~~g~~lIvD 172 (366)
T PRK08247 151 QETDIAAIAKIAKKHGLLLIVD 172 (366)
T ss_pred cHHHHHHHHHHHHHcCCEEEEE
Confidence 3489999999999999877653
No 341
>PF07733 DNA_pol3_alpha: Bacterial DNA polymerase III alpha subunit; InterPro: IPR011708 This is a conserved region found in the the DNA polymerase III alpha subunit, (2.7.7.7 from EC). DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. The alpha chain is the DNA polymerase.; GO: 0008408 3'-5' exonuclease activity, 0006260 DNA replication, 0005737 cytoplasm; PDB: 3F2C_A 3F2B_A 3F2D_A 2HPM_A 2HPI_A 3E0D_A 2HQA_A 2HNH_A.
Probab=34.89 E-value=22 Score=27.53 Aligned_cols=24 Identities=21% Similarity=0.284 Sum_probs=17.3
Q ss_pred HHHHHHHHHHhCCCcEEE-EcCCCC
Q psy4717 41 DVEKVVQVAHDHNLVIIP-FGGGTN 64 (90)
Q Consensus 41 ~v~~vv~~a~~~~i~v~~-~G~G~n 64 (90)
-+.+++++|+++++++-| +|++.+
T Consensus 45 i~~d~v~~a~~~~i~~g~GRGS~~g 69 (426)
T PF07733_consen 45 IVWDLVNWARKNGILVGPGRGSAAG 69 (426)
T ss_dssp HHHHHHHHHHHTT--BES-EGGGGG
T ss_pred HHHHHHHHHHhcCCccccCCCchHH
Confidence 368999999999999977 666443
No 342
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=34.77 E-value=76 Score=21.21 Aligned_cols=31 Identities=13% Similarity=0.179 Sum_probs=23.4
Q ss_pred cCccEEEEcCCH--HHHHHHHHHHHhCCCcEEE
Q psy4717 28 IGTRYWCITEST--EDVEKVVQVAHDHNLVIIP 58 (90)
Q Consensus 28 ~~p~~vv~P~s~--~~v~~vv~~a~~~~i~v~~ 58 (90)
.+++++..+-.. ..+.+++++|+++|+++.+
T Consensus 75 ~Gad~i~vh~~~~~~~~~~~i~~~~~~g~~~~~ 107 (206)
T TIGR03128 75 AGADIVTVLGVADDATIKGAVKAAKKHGKEVQV 107 (206)
T ss_pred cCCCEEEEeccCCHHHHHHHHHHHHHcCCEEEE
Confidence 457777655433 4678999999999999887
No 343
>PRK12414 putative aminotransferase; Provisional
Probab=34.75 E-value=50 Score=24.32 Aligned_cols=20 Identities=20% Similarity=0.582 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHhCCCcEEE
Q psy4717 39 TEDVEKVVQVAHDHNLVIIP 58 (90)
Q Consensus 39 ~~~v~~vv~~a~~~~i~v~~ 58 (90)
.+++.+++++|+++++.++.
T Consensus 181 ~~~~~~i~~~a~~~~~~ii~ 200 (384)
T PRK12414 181 AADLARLAQLTRNTDIVILS 200 (384)
T ss_pred HHHHHHHHHHHHHCCeEEEE
Confidence 58999999999999987764
No 344
>COG0046 PurL Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain [Nucleotide transport and metabolism]
Probab=34.72 E-value=43 Score=27.98 Aligned_cols=31 Identities=23% Similarity=0.283 Sum_probs=23.9
Q ss_pred EEEEcCCHHHHHHHHHHHHhCCCcEEEEcCCCCC
Q psy4717 32 YWCITESTEDVEKVVQVAHDHNLVIIPFGGGTNV 65 (90)
Q Consensus 32 ~vv~P~s~~~v~~vv~~a~~~~i~v~~~G~G~n~ 65 (90)
+++.| ++++++.++|+++++++.+.|-=+.-
T Consensus 329 lvv~p---~~~e~~~~i~~k~~l~~aVVG~vT~~ 359 (743)
T COG0046 329 LVVAP---EDVEEFLEICEKERLPAAVVGEVTDE 359 (743)
T ss_pred EEEcc---ccHHHHHHHHHHcCCCeEEEEEEecC
Confidence 44555 66777788899999999999876543
No 345
>cd06534 ALDH-SF NAD(P)+-dependent aldehyde dehydrogenase superfamily. The aldehyde dehydrogenase superfamily (ALDH-SF) of NAD(P)+-dependent enzymes, in general, oxidize a wide range of endogenous and exogenous aliphatic and aromatic aldehydes to their corresponding carboxylic acids and play an important role in detoxification. Besides aldehyde detoxification, many ALDH isozymes possess multiple additional catalytic and non-catalytic functions such as participating in metabolic pathways, or as binding proteins, or osmoregulants, to mention a few. The enzyme has three domains, a NAD(P)+ cofactor-binding domain, a catalytic domain, and a bridging domain; and the active enzyme is generally either homodimeric or homotetrameric. The catalytic mechanism is proposed to involve cofactor binding, resulting in a conformational change and activation of an invariant catalytic cysteine nucleophile. The cysteine and aldehyde substrate form an oxyanion thiohemiacetal intermediate resulting in hydri
Probab=34.70 E-value=1e+02 Score=22.49 Aligned_cols=37 Identities=16% Similarity=0.066 Sum_probs=33.3
Q ss_pred ccEEEEcCCHHHHHHHHHHHHhCCCcEEEEcCCCCCC
Q psy4717 30 TRYWCITESTEDVEKVVQVAHDHNLVIIPFGGGTNVT 66 (90)
Q Consensus 30 p~~vv~P~s~~~v~~vv~~a~~~~i~v~~~G~G~n~~ 66 (90)
.+.|++-.+.+-...+.+.+.++..|+...++|.|..
T Consensus 172 vd~v~~tGs~~~~~~v~~~~~~~~~~~~~e~~g~~~~ 208 (367)
T cd06534 172 VDKISFTGSTAVGKAIMKAAAENLKPVTLELGGKSPV 208 (367)
T ss_pred cCEEEEECCHHHHHHHHHHHhcCCCeEEEEcCCCCeE
Confidence 4899999999999999999999989999999998864
No 346
>PRK10653 D-ribose transporter subunit RbsB; Provisional
Probab=34.67 E-value=90 Score=21.69 Aligned_cols=32 Identities=19% Similarity=0.333 Sum_probs=24.8
Q ss_pred cc-EEEEcCCHHHHHHHHHHHHhCCCcEEEEcC
Q psy4717 30 TR-YWCITESTEDVEKVVQVAHDHNLVIIPFGG 61 (90)
Q Consensus 30 p~-~vv~P~s~~~v~~vv~~a~~~~i~v~~~G~ 61 (90)
++ .++.|.+.+.+...++.+++.++|++.++.
T Consensus 83 ~dgiii~~~~~~~~~~~l~~~~~~~ipvV~~~~ 115 (295)
T PRK10653 83 TKILLINPTDSDAVGNAVKMANQANIPVITLDR 115 (295)
T ss_pred CCEEEEcCCChHHHHHHHHHHHHCCCCEEEEcc
Confidence 55 556666666667888999999999999974
No 347
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=34.66 E-value=1.6e+02 Score=21.77 Aligned_cols=31 Identities=3% Similarity=0.100 Sum_probs=26.0
Q ss_pred cCccEEEEcCCHHHHHHHHHHHHhCCCcEEE
Q psy4717 28 IGTRYWCITESTEDVEKVVQVAHDHNLVIIP 58 (90)
Q Consensus 28 ~~p~~vv~P~s~~~v~~vv~~a~~~~i~v~~ 58 (90)
.....++...+.+++.++++++.+.|+..+-
T Consensus 157 v~i~~vv~~~N~~~i~~~~~~~~~lgv~~i~ 187 (378)
T PRK05301 157 LTLNAVIHRHNIDQIPRIIELAVELGADRLE 187 (378)
T ss_pred eEEEEEeecCCHHHHHHHHHHHHHcCCCEEE
Confidence 3456788999999999999999999987553
No 348
>PRK06225 aspartate aminotransferase; Provisional
Probab=34.64 E-value=53 Score=24.03 Aligned_cols=21 Identities=14% Similarity=0.520 Sum_probs=18.5
Q ss_pred CHHHHHHHHHHHHhCCCcEEE
Q psy4717 38 STEDVEKVVQVAHDHNLVIIP 58 (90)
Q Consensus 38 s~~~v~~vv~~a~~~~i~v~~ 58 (90)
+.+++.+++++|+++++.++.
T Consensus 175 ~~~~~~~i~~~a~~~~~~ii~ 195 (380)
T PRK06225 175 TEEEIKEFAEIARDNDAFLLH 195 (380)
T ss_pred CHHHHHHHHHHHHHCCcEEEE
Confidence 368999999999999998776
No 349
>PRK14465 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=34.63 E-value=1.2e+02 Score=22.76 Aligned_cols=63 Identities=16% Similarity=0.271 Sum_probs=40.8
Q ss_pred cchhHHHHHHHHhccCccccceeeecCc-cEEEEcCCHHHHHHHHHHHHhCCCcEEEEcC-CCCCCC
Q psy4717 3 STEDVEKVVQVAHDHNLVVNHQAIFIGT-RYWCITESTEDVEKVVQVAHDHNLVIIPFGG-GTNVTG 67 (90)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~vv~P~s~~~v~~vv~~a~~~~i~v~~~G~-G~n~~~ 67 (90)
|-++.+++++...+.... -+.+...| ..=+.|.+.+++.+..+...++|+++.++-. |..+.+
T Consensus 269 s~eda~~L~~ll~~l~~k--VnLIPyN~~~~~~~~ps~e~i~~F~~~L~~~Gi~v~~R~~~G~di~a 333 (342)
T PRK14465 269 GRENANKLVKIARSLDCK--INVIPLNTEFFGWRRPTDDEVAEFIMLLEPAGVPILNRRSPGKDIFG 333 (342)
T ss_pred CHHHHHHHHHHHhhCCCc--EEEEccCCCCCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCcChhh
Confidence 456778888866654321 12222222 2236778889999999999999999988843 665543
No 350
>cd06347 PBP1_ABC_ligand_binding_like_12 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=34.62 E-value=77 Score=22.15 Aligned_cols=33 Identities=12% Similarity=0.199 Sum_probs=28.0
Q ss_pred CccEEEEcCCHHHHHHHHHHHHhCCCcEEEEcC
Q psy4717 29 GTRYWCITESTEDVEKVVQVAHDHNLVIIPFGG 61 (90)
Q Consensus 29 ~p~~vv~P~s~~~v~~vv~~a~~~~i~v~~~G~ 61 (90)
+|++|+...+.+++..+++.|++.++.+..+|+
T Consensus 191 ~~d~i~~~~~~~~~~~~~~~~~~~g~~~~i~~~ 223 (334)
T cd06347 191 NPDVIFLPGYYTEVGLIAKQARELGIKVPILGG 223 (334)
T ss_pred CCCEEEEcCchhhHHHHHHHHHHcCCCCcEEec
Confidence 489999999999999999999999887666653
No 351
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=34.60 E-value=77 Score=24.82 Aligned_cols=28 Identities=14% Similarity=0.008 Sum_probs=25.2
Q ss_pred cEEEEcCCHHHHHHHHHHHHhCCCcEEE
Q psy4717 31 RYWCITESTEDVEKVVQVAHDHNLVIIP 58 (90)
Q Consensus 31 ~~vv~P~s~~~v~~vv~~a~~~~i~v~~ 58 (90)
--|+.|.+..|...++++|-+..-|+++
T Consensus 281 l~V~~P~d~~d~~~ll~~ai~~~~Pv~i 308 (464)
T PRK11892 281 LKVVAPYSAADAKGLLKAAIRDPNPVIF 308 (464)
T ss_pred CEEEEeCCHHHHHHHHHHHhhCCCcEEE
Confidence 4688999999999999999988878887
No 352
>cd06341 PBP1_ABC_ligand_binding_like_7 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=34.56 E-value=79 Score=22.40 Aligned_cols=31 Identities=10% Similarity=0.014 Sum_probs=26.3
Q ss_pred CccEEEEcCCHHHHHHHHHHHHhCCCcEEEE
Q psy4717 29 GTRYWCITESTEDVEKVVQVAHDHNLVIIPF 59 (90)
Q Consensus 29 ~p~~vv~P~s~~~v~~vv~~a~~~~i~v~~~ 59 (90)
.|++|+......+...+++.+++.|+..-..
T Consensus 188 ~pdaV~~~~~~~~a~~~~~~~~~~G~~~~~~ 218 (341)
T cd06341 188 GADAIITVLDAAVCASVLKAVRAAGLTPKVV 218 (341)
T ss_pred CCCEEEEecChHHHHHHHHHHHHcCCCCCEE
Confidence 4999999999999999999999998754333
No 353
>cd08199 EEVS 2-epi-5-epi-valiolone synthase (EEVS). 2-epi-5-epi-valiolone synthases catalyze the cyclization of sedoheptulose 7-phosphate to 2-epi-5-epi-valiolone in the biosynthesis of C(7)N-aminocyclitol-containing products. The cyclization product, 2-epi-5-epi-valiolone ((2S,3S,4S,5R)-5-(hydroxymethyl)cyclohexanon-2,3,4,5-tetrol), is a precursor of the valienamine moiety. The valienamine unit is responsible for their biological activities as various glycosidic hydrolases inhibitors. Two important microbial secondary metabolites, i.e., validamycin and acarbose, are used in agricultural and biomedical applications. Validamycine A is an antifungal antibiotic which has a strong trehalase inhibitory activity and has been used to control sheath blight disease in rice caused by Rhizoctonia solani. Acarbose is an alpha-glucosidase inhibitor used for the treatment of type II insulin-independent diabetes. Salbostatin produced by Streptomyces albus also belongs to this family. It exhibits s
Probab=34.45 E-value=62 Score=24.16 Aligned_cols=28 Identities=21% Similarity=0.480 Sum_probs=21.3
Q ss_pred CCHHHHHHHHHHHHhCCC----c-EEEEcCCCC
Q psy4717 37 ESTEDVEKVVQVAHDHNL----V-IIPFGGGTN 64 (90)
Q Consensus 37 ~s~~~v~~vv~~a~~~~i----~-v~~~G~G~n 64 (90)
.+.+.+.++++++.+.++ . ++.+|||+-
T Consensus 68 ~s~~~v~~~~~~l~~~~~~r~~d~IVaiGGG~v 100 (354)
T cd08199 68 KTMDTVLKIVDALDAFGISRRREPVLAIGGGVL 100 (354)
T ss_pred CCHHHHHHHHHHHHHcCCCCCCCEEEEECCcHH
Confidence 478899999988888765 4 555888853
No 354
>TIGR01227 hutG formimidoylglutamase. Formiminoglutamase, the fourth enzyme of histidine degradation, is similar to arginases and agmatinases. It is often encoded near other enzymes of the histidine degredation pathway: histidine ammonia-lyase, urocanate hydratase, and imidazolonepropionase.
Probab=34.42 E-value=28 Score=25.38 Aligned_cols=31 Identities=16% Similarity=0.319 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHhCCCcEEEEcCCCCCCCCc
Q psy4717 39 TEDVEKVVQVAHDHNLVIIPFGGGTNVTGAV 69 (90)
Q Consensus 39 ~~~v~~vv~~a~~~~i~v~~~G~G~n~~~~~ 69 (90)
.+.+++.++..-+.+.-.+.+||+|+++.+.
T Consensus 97 ~~~i~~~v~~~~~~g~~Pi~lGGdHsit~~~ 127 (307)
T TIGR01227 97 QHEIAQTAAALLADHRVPVILGGGHSIAYAT 127 (307)
T ss_pred HHHHHHHHHHHHhcCCeEEEECCcchhHHHH
Confidence 3555666666666666667799999986554
No 355
>PRK01722 formimidoylglutamase; Provisional
Probab=34.26 E-value=27 Score=25.54 Aligned_cols=31 Identities=19% Similarity=0.302 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHhCCCcEEEEcCCCCCCCCc
Q psy4717 39 TEDVEKVVQVAHDHNLVIIPFGGGTNVTGAV 69 (90)
Q Consensus 39 ~~~v~~vv~~a~~~~i~v~~~G~G~n~~~~~ 69 (90)
.+.+++.++..-+.+.-.+.+||+|+++.+.
T Consensus 103 ~~~i~~~v~~~~~~g~~pi~lGGdHsit~~~ 133 (320)
T PRK01722 103 QQALADTVGHCLRPNMRTIVLGGGHEIAFGS 133 (320)
T ss_pred HHHHHHHHHHHHhCCCeeEEEcCchHHHHHH
Confidence 4556666666666787778899999987544
No 356
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=34.24 E-value=38 Score=24.36 Aligned_cols=24 Identities=21% Similarity=0.407 Sum_probs=15.6
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEEc
Q psy4717 37 ESTEDVEKVVQVAHDHNLVIIPFG 60 (90)
Q Consensus 37 ~s~~~v~~vv~~a~~~~i~v~~~G 60 (90)
++.+|+..+.+.|.++++++=|-|
T Consensus 161 ~~leE~~avA~aca~~g~~lEPTG 184 (236)
T TIGR03581 161 KHLEEYAAVAKACAKHGFYLEPTG 184 (236)
T ss_pred ccHHHHHHHHHHHHHcCCccCCCC
Confidence 455777777777777776655543
No 357
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=34.12 E-value=56 Score=24.99 Aligned_cols=28 Identities=36% Similarity=0.552 Sum_probs=23.8
Q ss_pred CHHHHHHHHHHHHhCCCc-EEEEcCCCCC
Q psy4717 38 STEDVEKVVQVAHDHNLV-IIPFGGGTNV 65 (90)
Q Consensus 38 s~~~v~~vv~~a~~~~i~-v~~~G~G~n~ 65 (90)
+.+.|.+.++..++.+.- ++.+||||.+
T Consensus 71 ~~~~v~~~~~~~~~~~~D~iIalGGGS~~ 99 (377)
T COG1454 71 TIETVEAGAEVAREFGPDTIIALGGGSVI 99 (377)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCccHH
Confidence 568899999999998884 7889999975
No 358
>PRK09982 universal stress protein UspD; Provisional
Probab=34.08 E-value=53 Score=20.60 Aligned_cols=22 Identities=9% Similarity=0.221 Sum_probs=18.6
Q ss_pred HHHHHHHHHhCCCcEEEEcCCC
Q psy4717 42 VEKVVQVAHDHNLVIIPFGGGT 63 (90)
Q Consensus 42 v~~vv~~a~~~~i~v~~~G~G~ 63 (90)
...++++|.+.+.-+++.|.++
T Consensus 92 ~~~I~~~A~~~~aDLIVmG~~~ 113 (142)
T PRK09982 92 PETLLEIMQKEQCDLLVCGHHH 113 (142)
T ss_pred HHHHHHHHHHcCCCEEEEeCCh
Confidence 5677889999999999999764
No 359
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=34.08 E-value=76 Score=19.14 Aligned_cols=26 Identities=0% Similarity=0.100 Sum_probs=19.6
Q ss_pred HHHHHHHHHHhCCCcEEEEcCCCCCC
Q psy4717 41 DVEKVVQVAHDHNLVIIPFGGGTNVT 66 (90)
Q Consensus 41 ~v~~vv~~a~~~~i~v~~~G~G~n~~ 66 (90)
...++++..++.|.+++...+.++.+
T Consensus 18 ga~e~l~~L~~~g~~~~~lTNns~~s 43 (101)
T PF13344_consen 18 GAVEALDALRERGKPVVFLTNNSSRS 43 (101)
T ss_dssp THHHHHHHHHHTTSEEEEEES-SSS-
T ss_pred CHHHHHHHHHHcCCCEEEEeCCCCCC
Confidence 45677888889999999998887653
No 360
>PF09286 Pro-kuma_activ: Pro-kumamolisin, activation domain ; InterPro: IPR015366 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain is found at the N terminus of peptidases belonging to MEROPS peptidase family S53 (sedolisin, clan SB). The domain adopts a ferredoxin-like fold, with an alpha+beta sandwich. Cleavage of the domain results in activation of the peptidase []. ; GO: 0008236 serine-type peptidase activity; PDB: 1T1E_A 3EDY_A 3EE6_A.
Probab=34.00 E-value=78 Score=20.10 Aligned_cols=24 Identities=29% Similarity=0.416 Sum_probs=18.6
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEcC
Q psy4717 38 STEDVEKVVQVAHDHNLVIIPFGG 61 (90)
Q Consensus 38 s~~~v~~vv~~a~~~~i~v~~~G~ 61 (90)
+.+++.++.+|..++|+.+.-...
T Consensus 60 ~~~~v~~V~~wL~~~G~~~~~~~~ 83 (143)
T PF09286_consen 60 SPEDVAAVKSWLKSHGLTVVEVSA 83 (143)
T ss_dssp -HHHHHHHHHHHHHCT-EEEEEET
T ss_pred CHHHHHHHHHHHHHcCCceeEEeC
Confidence 578899999999999998877433
No 361
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=33.99 E-value=72 Score=19.90 Aligned_cols=26 Identities=12% Similarity=0.179 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHhCCCcEEEEcCCCC
Q psy4717 39 TEDVEKVVQVAHDHNLVIIPFGGGTN 64 (90)
Q Consensus 39 ~~~v~~vv~~a~~~~i~v~~~G~G~n 64 (90)
.+.++.+++-+.+.+.+++.+|--.|
T Consensus 10 ~~~L~~l~~~a~~~~~~~V~RG~~~g 35 (113)
T PF09673_consen 10 DASLRNLLKQAERAGVVVVFRGFPDG 35 (113)
T ss_pred HHHHHHHHHHHHhCCcEEEEECCCCC
Confidence 47899999999999999999996543
No 362
>COG4229 Predicted enolase-phosphatase [Energy production and conversion]
Probab=33.99 E-value=67 Score=22.78 Aligned_cols=24 Identities=8% Similarity=0.206 Sum_probs=18.3
Q ss_pred HHHHHHHHHHhCCCcEEEEcCCCC
Q psy4717 41 DVEKVVQVAHDHNLVIIPFGGGTN 64 (90)
Q Consensus 41 ~v~~vv~~a~~~~i~v~~~G~G~n 64 (90)
|..+.++.-.+.|+|+++++.||-
T Consensus 107 Dav~~ik~wk~~g~~vyiYSSGSV 130 (229)
T COG4229 107 DAVQAIKRWKALGMRVYIYSSGSV 130 (229)
T ss_pred hHHHHHHHHHHcCCcEEEEcCCCc
Confidence 444555666778999999999983
No 363
>PF01855 POR_N: Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg; InterPro: IPR002880 This family includes the N-terminal region of the pyruvate ferredoxin oxidoreductase, corresponding to the first two structural domains. This region is involved in inter subunit contacts []. Pyruvate oxidoreductase (POR) catalyses the final step in the fermentation of carbohydrates in anaerobic microorganisms []. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA []. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2PDA_B 2C3Y_A 2C3P_B 2UZA_A 2C3U_B 2C42_A 1B0P_B 2C3M_A 2C3O_B 1KEK_B ....
Probab=33.95 E-value=72 Score=22.48 Aligned_cols=36 Identities=11% Similarity=0.030 Sum_probs=26.3
Q ss_pred ccEEEEcCCHHHHHHHH----HHHHhCCCcEEEEcCCCCC
Q psy4717 30 TRYWCITESTEDVEKVV----QVAHDHNLVIIPFGGGTNV 65 (90)
Q Consensus 30 p~~vv~P~s~~~v~~vv----~~a~~~~i~v~~~G~G~n~ 65 (90)
+..++.|.|.+|.-+.. +++.+..+|++.+.-|.-.
T Consensus 118 ~~~vl~p~~~QEa~d~~~~A~~lAe~~~~PViv~~Dg~~~ 157 (230)
T PF01855_consen 118 GWIVLAPSSPQEAYDMTLIAFNLAEKYQTPVIVLFDGFLC 157 (230)
T ss_dssp S-EEEE--SHHHHHHHHHHHHHHHHHHTSEEEEEEECCCC
T ss_pred CeEEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEechhhh
Confidence 67799999999986554 6667899999998877654
No 364
>cd06338 PBP1_ABC_ligand_binding_like_5 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT); however their ligand specificity has not been determined experimentally.
Probab=33.89 E-value=74 Score=22.53 Aligned_cols=36 Identities=11% Similarity=0.066 Sum_probs=30.2
Q ss_pred CccEEEEcCCHHHHHHHHHHHHhCCCcEEEEcCCCC
Q psy4717 29 GTRYWCITESTEDVEKVVQVAHDHNLVIIPFGGGTN 64 (90)
Q Consensus 29 ~p~~vv~P~s~~~v~~vv~~a~~~~i~v~~~G~G~n 64 (90)
++.+|+-|-+......+..++.+.++|++..+..+.
T Consensus 71 ~v~aviG~~~s~~~~a~~~~~~~~~vp~i~~~~~~~ 106 (345)
T cd06338 71 KVDFLLGPYSSGLTLAAAPVAEKYGVPMVAGSGASD 106 (345)
T ss_pred CccEEecCCcchhHHHHHHHHHHhCCcEEecCCCCc
Confidence 477888898888888999999999999998776543
No 365
>cd06308 PBP1_sensor_kinase_like Periplasmic binding domain of two-component sensor kinase signaling systems. Periplasmic binding domain of two-component sensor kinase signaling systems, some of which are fused with a C-terminal histidine kinase A domain (HisK) and/or a signal receiver domain (REC). Members of this group share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily and are predicted to be involved in sensing of environmental stimuli; their substrate specificities, however, are not known in detail.
Probab=33.87 E-value=79 Score=21.43 Aligned_cols=34 Identities=18% Similarity=0.223 Sum_probs=24.3
Q ss_pred CccEEEE-cCCHHHHHHHHHHHHhCCCcEEEEcCC
Q psy4717 29 GTRYWCI-TESTEDVEKVVQVAHDHNLVIIPFGGG 62 (90)
Q Consensus 29 ~p~~vv~-P~s~~~v~~vv~~a~~~~i~v~~~G~G 62 (90)
+++.++. |.+.+.....++.+.+.++|++.++..
T Consensus 56 ~vdgiii~~~~~~~~~~~~~~~~~~~ipvV~~~~~ 90 (270)
T cd06308 56 GVDLLIISPNEAAPLTPVVEEAYRAGIPVILLDRK 90 (270)
T ss_pred CCCEEEEecCchhhchHHHHHHHHCCCCEEEeCCC
Confidence 3666655 545555567778888999999999753
No 366
>PLN02954 phosphoserine phosphatase
Probab=33.74 E-value=62 Score=21.64 Aligned_cols=26 Identities=12% Similarity=0.190 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHhCCCcEEEEcCCCCC
Q psy4717 40 EDVEKVVQVAHDHNLVIIPFGGGTNV 65 (90)
Q Consensus 40 ~~v~~vv~~a~~~~i~v~~~G~G~n~ 65 (90)
..+.++++++++.|+++.+.++|...
T Consensus 87 pg~~e~l~~l~~~g~~~~IvS~~~~~ 112 (224)
T PLN02954 87 PGIPELVKKLRARGTDVYLVSGGFRQ 112 (224)
T ss_pred ccHHHHHHHHHHCCCEEEEECCCcHH
Confidence 57788999999999999999988753
No 367
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=33.74 E-value=65 Score=21.90 Aligned_cols=33 Identities=12% Similarity=0.101 Sum_probs=24.4
Q ss_pred ccEE-EEcCCHHHHHHHHHHHHhCCCcEEEEcCC
Q psy4717 30 TRYW-CITESTEDVEKVVQVAHDHNLVIIPFGGG 62 (90)
Q Consensus 30 p~~v-v~P~s~~~v~~vv~~a~~~~i~v~~~G~G 62 (90)
++.+ +.|.+.+.+...++.+.+.++|++.++..
T Consensus 56 vdgiIi~~~~~~~~~~~i~~~~~~~iPvV~~~~~ 89 (273)
T cd06309 56 VDVIILAPVVETGWDPVLKEAKAAGIPVILVDRG 89 (273)
T ss_pred CCEEEEcCCccccchHHHHHHHHCCCCEEEEecC
Confidence 5555 44666555567788889999999999864
No 368
>cd06345 PBP1_ABC_ligand_binding_like_10 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=33.74 E-value=92 Score=22.19 Aligned_cols=36 Identities=19% Similarity=0.097 Sum_probs=30.3
Q ss_pred CccEEEEcCCHHHHHHHHHHHHhCCCcEEEEcCCCC
Q psy4717 29 GTRYWCITESTEDVEKVVQVAHDHNLVIIPFGGGTN 64 (90)
Q Consensus 29 ~p~~vv~P~s~~~v~~vv~~a~~~~i~v~~~G~G~n 64 (90)
++.+|+-|-+......+..++++.++|++..+..+.
T Consensus 67 ~v~aiiG~~~s~~~~a~~~~~~~~~vp~i~~~~~~~ 102 (344)
T cd06345 67 KVDAVVGGYSSEVVLALQDVAAENKVPFIVTGAASP 102 (344)
T ss_pred CceEEECCcchHHHHHHHHHHHHcCCcEEeccCCCC
Confidence 577889899999999999999999999987655443
No 369
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=33.71 E-value=97 Score=20.50 Aligned_cols=38 Identities=13% Similarity=0.122 Sum_probs=27.5
Q ss_pred cCccEEEEcCC--HHHHHHHHHHHHhCCCcEEE--EcCCCCC
Q psy4717 28 IGTRYWCITES--TEDVEKVVQVAHDHNLVIIP--FGGGTNV 65 (90)
Q Consensus 28 ~~p~~vv~P~s--~~~v~~vv~~a~~~~i~v~~--~G~G~n~ 65 (90)
.+++.++.|.. .+.+.++++.|+++|+++.+ .+-.+..
T Consensus 76 aGad~i~~h~~~~~~~~~~~i~~~~~~g~~~~v~~~~~~t~~ 117 (202)
T cd04726 76 AGADIVTVLGAAPLSTIKKAVKAAKKYGKEVQVDLIGVEDPE 117 (202)
T ss_pred cCCCEEEEEeeCCHHHHHHHHHHHHHcCCeEEEEEeCCCCHH
Confidence 45788777653 35688899999999988875 5666543
No 370
>PRK09147 succinyldiaminopimelate transaminase; Provisional
Probab=33.69 E-value=48 Score=24.41 Aligned_cols=20 Identities=20% Similarity=0.331 Sum_probs=17.0
Q ss_pred CHHHHHHHHHHHHhCCCcEE
Q psy4717 38 STEDVEKVVQVAHDHNLVII 57 (90)
Q Consensus 38 s~~~v~~vv~~a~~~~i~v~ 57 (90)
|.+++.+++++|+++++.++
T Consensus 184 s~~~~~~l~~~a~~~~~~ii 203 (396)
T PRK09147 184 PLDDWKKLFALSDRYGFVIA 203 (396)
T ss_pred CHHHHHHHHHHHHHcCeEEE
Confidence 46899999999999987664
No 371
>KOG1615|consensus
Probab=33.68 E-value=58 Score=23.21 Aligned_cols=24 Identities=17% Similarity=0.320 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHhCCCcEEEEcCCC
Q psy4717 40 EDVEKVVQVAHDHNLVIIPFGGGT 63 (90)
Q Consensus 40 ~~v~~vv~~a~~~~i~v~~~G~G~ 63 (90)
--+.++++..++.|+.++..+||-
T Consensus 91 ~Gi~eLv~~L~~~~~~v~liSGGF 114 (227)
T KOG1615|consen 91 PGIRELVSRLHARGTQVYLISGGF 114 (227)
T ss_pred CCHHHHHHHHHHcCCeEEEEcCCh
Confidence 457788899999999999999995
No 372
>PRK11302 DNA-binding transcriptional regulator HexR; Provisional
Probab=33.63 E-value=75 Score=22.26 Aligned_cols=28 Identities=18% Similarity=0.298 Sum_probs=24.2
Q ss_pred EEcCCHHHHHHHHHHHHhCCCcEEEEcC
Q psy4717 34 CITESTEDVEKVVQVAHDHNLVIIPFGG 61 (90)
Q Consensus 34 v~P~s~~~v~~vv~~a~~~~i~v~~~G~ 61 (90)
-..+...++.++++.|++.|.+++.+.+
T Consensus 183 S~sG~t~~~~~~~~~ak~~g~~vI~IT~ 210 (284)
T PRK11302 183 SHTGRTKSLVELAQLARENGATVIAITS 210 (284)
T ss_pred eCCCCCHHHHHHHHHHHHcCCeEEEECC
Confidence 3456678899999999999999999986
No 373
>TIGR03639 cas1_NMENI CRISPR-associated endonuclease Cas1, NMENI subtype. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is a prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 variant of the NMENI subtype of CRISPR/Cas system.
Probab=33.58 E-value=63 Score=23.36 Aligned_cols=38 Identities=8% Similarity=0.045 Sum_probs=27.5
Q ss_pred EEEcCCHHHHHHHHHHHHhCCCcEEEEcCCCCCCCCcc
Q psy4717 33 WCITESTEDVEKVVQVAHDHNLVIIPFGGGTNVTGAVA 70 (90)
Q Consensus 33 vv~P~s~~~v~~vv~~a~~~~i~v~~~G~G~n~~~~~~ 70 (90)
++....+.==.+++++|.++++++..++...+..|...
T Consensus 39 vi~g~~~~lst~~l~~l~~~~I~v~f~~~~G~~~g~~~ 76 (278)
T TIGR03639 39 LIENPQITISSALLSALAENNIALIFCDEKHLPVGQLL 76 (278)
T ss_pred EEeCCCEEEcHHHHHHHHHCCCeEEEECCCCCcceEEc
Confidence 33332455557899999999999999998776655453
No 374
>TIGR03199 pucC xanthine dehydrogenase C subunit. This gene has been characterized in B. subtilis as the FAD binding-subunit of xanthine dehydrogenase (pucC), acting in conjunction with pucD, the molybdopterin-binding subunit and pucE, the FeS-binding subunit.
Probab=33.57 E-value=46 Score=23.67 Aligned_cols=47 Identities=4% Similarity=-0.083 Sum_probs=29.5
Q ss_pred cCCHHHHHHHHHHHHhCCCcEEEEcCCCCCCCCcccCCC-CccceEEEEcCCCC
Q psy4717 36 TESTEDVEKVVQVAHDHNLVIIPFGGGTNVTGAVACPEN-ELRTIISLDTSQMQ 88 (90)
Q Consensus 36 P~s~~~v~~vv~~a~~~~i~v~~~G~G~n~~~~~~~~~~-~~~~gvvIdl~~m~ 88 (90)
|+|.+|+.++++- +. ...+++|||.+.-... .+ -.....+||+.++.
T Consensus 1 P~sl~ea~~ll~~---~~-~a~ivaGgT~l~~~~~--~~~~~~~~~lIdi~~i~ 48 (264)
T TIGR03199 1 PAALDEAWSLLEK---AP-DSTFVSGSTLLQLQWE--KGTLPMKQHLVSLEGID 48 (264)
T ss_pred CCCHHHHHHHHHh---CC-CCEEEEccChHHHHHh--cCcCCCCCeEEEcCCCh
Confidence 7888888888874 22 3567999998843221 11 01136889998753
No 375
>COG3797 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.55 E-value=96 Score=21.43 Aligned_cols=57 Identities=18% Similarity=0.233 Sum_probs=34.3
Q ss_pred cchhHHHHHHHHhccCccccceeeecCccEEEEcCCHHHHHHHHHHHHhCCCcEEEEcC
Q psy4717 3 STEDVEKVVQVAHDHNLVVNHQAIFIGTRYWCITESTEDVEKVVQVAHDHNLVIIPFGG 61 (90)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~vv~P~s~~~v~~vv~~a~~~~i~v~~~G~ 61 (90)
|-++|++++. ...+-........+....++-.|-..++|.++.+.|... -.|.+.|+
T Consensus 78 s~~~~~~i~a-~nPf~~~~~~~~~~~~v~f~~ep~dvd~v~~l~~~~~~~-eev~~~g~ 134 (178)
T COG3797 78 SAEDWETIAA-ANPFPEEAAGEPARVCVRFYREPLDVDEVEALADKAGGD-EEVLAVGD 134 (178)
T ss_pred eHHHHHHHHh-cCCCchhhccCcceEEEEEEcCCCcHHHHHHHHHHhCCC-ceEEecCC
Confidence 5577888766 333221111011334456677899999999999988763 34555554
No 376
>PHA01735 hypothetical protein
Probab=33.40 E-value=71 Score=18.86 Aligned_cols=24 Identities=8% Similarity=0.198 Sum_probs=20.1
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEEc
Q psy4717 37 ESTEDVEKVVQVAHDHNLVIIPFG 60 (90)
Q Consensus 37 ~s~~~v~~vv~~a~~~~i~v~~~G 60 (90)
.++.|+.++.+|.+.++|.-.|.-
T Consensus 30 ATtaDL~AA~d~Lk~NdItgv~~~ 53 (76)
T PHA01735 30 ATTADLRAACDWLKSNDITGVAVD 53 (76)
T ss_pred ccHHHHHHHHHHHHHCCCceeeCC
Confidence 467999999999999998766653
No 377
>PLN02607 1-aminocyclopropane-1-carboxylate synthase
Probab=33.38 E-value=56 Score=25.02 Aligned_cols=19 Identities=11% Similarity=0.314 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHhCCCcEE
Q psy4717 39 TEDVEKVVQVAHDHNLVII 57 (90)
Q Consensus 39 ~~~v~~vv~~a~~~~i~v~ 57 (90)
.+++.+++++|+++++.++
T Consensus 219 ~e~l~~l~~~~~~~~i~lI 237 (447)
T PLN02607 219 RSVLEDILDFVVRKNIHLV 237 (447)
T ss_pred HHHHHHHHHHHHHCCCEEE
Confidence 6899999999999998765
No 378
>TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated. Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream.
Probab=33.38 E-value=59 Score=25.71 Aligned_cols=26 Identities=12% Similarity=0.172 Sum_probs=22.9
Q ss_pred EcCCHHHHHHHHHHHHhCCCcEEEEc
Q psy4717 35 ITESTEDVEKVVQVAHDHNLVIIPFG 60 (90)
Q Consensus 35 ~P~s~~~v~~vv~~a~~~~i~v~~~G 60 (90)
+|-|.+.++++-++|+++|+|+..=|
T Consensus 199 qpvslenlr~V~~la~~~GIplhLDg 224 (467)
T TIGR02617 199 QPVSLANLKAVYEIAKKYDIPVVMDS 224 (467)
T ss_pred EEeCHHHHHHHHHHHHHcCCcEEEEh
Confidence 36788999999999999999998755
No 379
>PRK05764 aspartate aminotransferase; Provisional
Probab=33.37 E-value=56 Score=23.85 Aligned_cols=20 Identities=25% Similarity=0.612 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHhCCCcEEE
Q psy4717 39 TEDVEKVVQVAHDHNLVIIP 58 (90)
Q Consensus 39 ~~~v~~vv~~a~~~~i~v~~ 58 (90)
.+++++++++|+++++.++.
T Consensus 183 ~~~~~~l~~~a~~~~~~ii~ 202 (393)
T PRK05764 183 PEELEAIADVAVEHDIWVLS 202 (393)
T ss_pred HHHHHHHHHHHHHCCcEEEE
Confidence 47899999999999987654
No 380
>PRK15447 putative protease; Provisional
Probab=33.37 E-value=86 Score=22.82 Aligned_cols=22 Identities=5% Similarity=-0.061 Sum_probs=17.7
Q ss_pred CCHHHHHHHHHHHHhCCCcEEE
Q psy4717 37 ESTEDVEKVVQVAHDHNLVIIP 58 (90)
Q Consensus 37 ~s~~~v~~vv~~a~~~~i~v~~ 58 (90)
=+.+++.++++.|+++|..+++
T Consensus 45 f~~~~l~e~v~~~~~~gkkvyv 66 (301)
T PRK15447 45 LKVGDWLELAERLAAAGKEVVL 66 (301)
T ss_pred CCHHHHHHHHHHHHHcCCEEEE
Confidence 4668888888888888887766
No 381
>PRK14460 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=33.29 E-value=1.2e+02 Score=22.77 Aligned_cols=60 Identities=15% Similarity=0.215 Sum_probs=36.9
Q ss_pred chhHHHHHHHHhccC----ccccceeeecCccEEEEcCCHHHHHHHHHHHHhCCCcEEEEcC-CCCCCC
Q psy4717 4 TEDVEKVVQVAHDHN----LVVNHQAIFIGTRYWCITESTEDVEKVVQVAHDHNLVIIPFGG-GTNVTG 67 (90)
Q Consensus 4 ~~~~~~~~~~~~~~~----~~~~~~~~~~~p~~vv~P~s~~~v~~vv~~a~~~~i~v~~~G~-G~n~~~ 67 (90)
-++++.+++...... +-+.|.. .+.. +.+.+.+++.+..++..++|+++.++-. |..+.+
T Consensus 272 ~ed~~~l~~~l~~~~~~VnLIpyn~~--~g~~--y~~p~~e~v~~f~~~l~~~Gi~vtir~~~G~di~a 336 (354)
T PRK14460 272 LEHARELVRLLSRTKCKLNLIVYNPA--EGLP--YSAPTEERILAFEKYLWSKGITAIIRKSKGQDIKA 336 (354)
T ss_pred HHHHHHHHHHHhcCCCcEEEEcCCCC--CCCC--CCCCCHHHHHHHHHHHHHCCCeEEEeCCCCCchHh
Confidence 356777777655442 1222221 1122 3577888899999999999998877643 665543
No 382
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=33.28 E-value=71 Score=19.93 Aligned_cols=25 Identities=4% Similarity=0.130 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHhCCCcEEEEcCCC
Q psy4717 39 TEDVEKVVQVAHDHNLVIIPFGGGT 63 (90)
Q Consensus 39 ~~~v~~vv~~a~~~~i~v~~~G~G~ 63 (90)
-+.+.++++.++++|+++.+.++++
T Consensus 31 ~~gv~e~L~~Lk~~g~~l~i~Sn~~ 55 (128)
T TIGR01681 31 IKEIRDKLQTLKKNGFLLALASYND 55 (128)
T ss_pred HHHHHHHHHHHHHCCeEEEEEeCCC
Confidence 4789999999999999999998883
No 383
>PLN02656 tyrosine transaminase
Probab=33.23 E-value=58 Score=24.28 Aligned_cols=19 Identities=16% Similarity=0.443 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHhCCCcEE
Q psy4717 39 TEDVEKVVQVAHDHNLVII 57 (90)
Q Consensus 39 ~~~v~~vv~~a~~~~i~v~ 57 (90)
.+++.+++++|+++++.++
T Consensus 188 ~~~~~~i~~~a~~~~~~ii 206 (409)
T PLN02656 188 YQHLKKIAETAEKLKILVI 206 (409)
T ss_pred HHHHHHHHHHHHHcCCEEE
Confidence 4799999999999998765
No 384
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. 6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.
Probab=33.21 E-value=69 Score=24.01 Aligned_cols=29 Identities=21% Similarity=0.310 Sum_probs=22.9
Q ss_pred CCHHHHHHHHHHHHhCCCc-EEEEcCCCCC
Q psy4717 37 ESTEDVEKVVQVAHDHNLV-IIPFGGGTNV 65 (90)
Q Consensus 37 ~s~~~v~~vv~~a~~~~i~-v~~~G~G~n~ 65 (90)
.+.+++.+.++.+++.+.- ++.+|||+-+
T Consensus 63 ~~~~~v~~~~~~~~~~~~D~IIaiGGGS~i 92 (386)
T cd08191 63 LPRSELCDAASAAARAGPDVIIGLGGGSCI 92 (386)
T ss_pred cCHHHHHHHHHHHHhcCCCEEEEeCCchHH
Confidence 4567788899999998864 6679999865
No 385
>PF00543 P-II: Nitrogen regulatory protein P-II members of this family.; InterPro: IPR002187 In Gram-negative bacteria, the activity and concentration of glutamine synthetase (GS) is regulated in response to nitrogen source availability. PII, a tetrameric protein encoded by the glnB gene, is a component of the adenylation cascade involved in the regulation of GS activity []. In nitrogen-limiting conditions, when the ratio of glutamine to 2-ketoglutarate decreases, P-II is uridylylated on a tyrosine residue to form P-II-UMP. P-II-UMP allows the deadenylation of GS, thus activating the enzyme. Conversely, in nitrogen excess, P-II-UMP is deuridylated and then promotes the adenylation of GS. P-II also indirectly controls the transcription of the GS gene (glnA) by preventing NR-II (ntrB) to phosphorylate NR-I (ntrC) which is the transcriptional activator of glnA. Once P-II is uridylylated, these events are reversed. P-II is a protein of about 110 amino acid residues extremely well conserved. The tyrosine which is uridylated is located in the central part of the protein. In cyanobacteria, P-II seems to be phosphorylated on a serine residue rather than being uridylated. In methanogenic archaebacteria, the nitrogenase iron protein gene (nifH) is followed by two open reading frames highly similar to the eubacterial P-II protein []. These proteins could be involved in the regulation of nitrogen fixation. In the red alga, Porphyra purpurea, there is a glnB homologue encoded in the chloroplast genome. Other proteins highly similar to glnB are: Bacillus subtilis protein nrgB []. Escherichia coli hypothetical protein ybaI []. ; GO: 0030234 enzyme regulator activity, 0006808 regulation of nitrogen utilization; PDB: 1V3S_B 1V3R_C 2XZW_A 2XUL_A 2V5H_J 2XG8_C 2JJ4_F 1QY7_C 4AFF_A 2XBP_A ....
Probab=33.11 E-value=57 Score=19.65 Aligned_cols=35 Identities=17% Similarity=0.114 Sum_probs=25.8
Q ss_pred cEEEEcCCHHHHHHHHHHHHhCCCcE-EEEcCCCCC
Q psy4717 31 RYWCITESTEDVEKVVQVAHDHNLVI-IPFGGGTNV 65 (90)
Q Consensus 31 ~~vv~P~s~~~v~~vv~~a~~~~i~v-~~~G~G~n~ 65 (90)
.+++.|.-.++|.++|+-+--.++.+ -++|-|...
T Consensus 2 ~aIir~~~~~~v~~aL~~~G~~g~Tv~~v~G~G~~~ 37 (102)
T PF00543_consen 2 EAIIRPEKLEEVIEALREAGVPGMTVSEVRGRGRQK 37 (102)
T ss_dssp EEEEEGGGHHHHHHHHHHTTGSCEEEEEEEEESSTT
T ss_pred EEEEChhHHHHHHHHHHHCCCCeEEEEEeEEecccc
Confidence 47899999999999998776666655 445556544
No 386
>PLN02591 tryptophan synthase
Probab=33.04 E-value=1.8e+02 Score=20.77 Aligned_cols=31 Identities=10% Similarity=0.187 Sum_probs=22.6
Q ss_pred ccEEEEcC-CHHHHHHHHHHHHhCCCcEEEEc
Q psy4717 30 TRYWCITE-STEDVEKVVQVAHDHNLVIIPFG 60 (90)
Q Consensus 30 p~~vv~P~-s~~~v~~vv~~a~~~~i~v~~~G 60 (90)
.+.++.|. ..||..++.+.|+++++..+++=
T Consensus 107 v~GviipDLP~ee~~~~~~~~~~~gl~~I~lv 138 (250)
T PLN02591 107 VHGLVVPDLPLEETEALRAEAAKNGIELVLLT 138 (250)
T ss_pred CCEEEeCCCCHHHHHHHHHHHHHcCCeEEEEe
Confidence 55666665 44888888888888888776664
No 387
>COG2173 DdpX D-alanyl-D-alanine dipeptidase [Cell envelope biogenesis, outer membrane]
Probab=33.02 E-value=55 Score=23.17 Aligned_cols=35 Identities=14% Similarity=0.136 Sum_probs=28.1
Q ss_pred eeeecCccEEEEcCCHHHHHHHHHHHHhCCCcEEE
Q psy4717 24 QAIFIGTRYWCITESTEDVEKVVQVAHDHNLVIIP 58 (90)
Q Consensus 24 ~~~~~~p~~vv~P~s~~~v~~vv~~a~~~~i~v~~ 58 (90)
.+|...+.|++.|.-++++..+-.+++-.|..+.+
T Consensus 59 p~~~~~~~c~l~~~Aaqal~~~~~~~~~~g~~lvi 93 (211)
T COG2173 59 PIYEIGARCLLHPPAAQALAVDASFARAVGLTLVI 93 (211)
T ss_pred cccccCchheecHHHHHHHHHHHHHHHhhccceEE
Confidence 55677799999999999999999988877665443
No 388
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=33.00 E-value=1e+02 Score=22.49 Aligned_cols=28 Identities=14% Similarity=0.229 Sum_probs=0.0
Q ss_pred EEEEc-CCHHHHHHHHHHHHhCCCcEEEE
Q psy4717 32 YWCIT-ESTEDVEKVVQVAHDHNLVIIPF 59 (90)
Q Consensus 32 ~vv~P-~s~~~v~~vv~~a~~~~i~v~~~ 59 (90)
.|+.+ .+.+|+.++++++.+.++.+..+
T Consensus 161 ~v~~~g~N~~ei~~~~~~~~~~gi~~~~i 189 (329)
T PRK13361 161 AVILRGQNDDEVLDLVEFCRERGLDIAFI 189 (329)
T ss_pred EEEECCCCHHHHHHHHHHHHhcCCeEEEE
No 389
>PRK12313 glycogen branching enzyme; Provisional
Probab=33.00 E-value=59 Score=26.19 Aligned_cols=23 Identities=22% Similarity=0.268 Sum_probs=20.2
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEE
Q psy4717 37 ESTEDVEKVVQVAHDHNLVIIPF 59 (90)
Q Consensus 37 ~s~~~v~~vv~~a~~~~i~v~~~ 59 (90)
.+.+|++++|+.|+++||.|+.=
T Consensus 217 Gt~~d~k~lv~~~H~~Gi~VilD 239 (633)
T PRK12313 217 GTPEDFMYLVDALHQNGIGVILD 239 (633)
T ss_pred CCHHHHHHHHHHHHHCCCEEEEE
Confidence 47899999999999999998753
No 390
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=32.86 E-value=67 Score=24.57 Aligned_cols=30 Identities=27% Similarity=0.246 Sum_probs=24.9
Q ss_pred eecCccEEEEcCC-HHHHHHHHHHHHhCCCcEEE
Q psy4717 26 IFIGTRYWCITES-TEDVEKVVQVAHDHNLVIIP 58 (90)
Q Consensus 26 ~~~~p~~vv~P~s-~~~v~~vv~~a~~~~i~v~~ 58 (90)
.|+.|--+ .+ .+.+.++++.|+++++|+.+
T Consensus 105 iRINPGNi---g~~~~~v~~vv~~ak~~~ipIRI 135 (360)
T PRK00366 105 LRINPGNI---GKRDERVREVVEAAKDYGIPIRI 135 (360)
T ss_pred EEECCCCC---CchHHHHHHHHHHHHHCCCCEEE
Confidence 45566665 55 78999999999999999998
No 391
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=32.80 E-value=86 Score=25.11 Aligned_cols=30 Identities=7% Similarity=-0.001 Sum_probs=24.0
Q ss_pred cEEEEcCCHHHHHHHHHHHHhC-CCcEEEEc
Q psy4717 31 RYWCITESTEDVEKVVQVAHDH-NLVIIPFG 60 (90)
Q Consensus 31 ~~vv~P~s~~~v~~vv~~a~~~-~i~v~~~G 60 (90)
-.|+.|.+..|+..++++|-+. +-|++++=
T Consensus 404 l~V~~P~d~~e~~~~l~~a~~~~~gP~~ir~ 434 (581)
T PRK12315 404 LVYLAPTTKEELIAMLEWALTQHEHPVAIRV 434 (581)
T ss_pred CEEEecCCHHHHHHHHHHHHhCCCCcEEEEE
Confidence 3578999999999999999875 46766654
No 392
>cd01450 vWFA_subfamily_ECM Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=32.79 E-value=52 Score=20.29 Aligned_cols=24 Identities=17% Similarity=0.296 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHhCCCcEEEEcCCC
Q psy4717 40 EDVEKVVQVAHDHNLVIIPFGGGT 63 (90)
Q Consensus 40 ~~v~~vv~~a~~~~i~v~~~G~G~ 63 (90)
.++.++++.+++++++++++|-|.
T Consensus 119 ~~~~~~~~~~~~~~v~v~~i~~g~ 142 (161)
T cd01450 119 GDPKEAAAKLKDEGIKVFVVGVGP 142 (161)
T ss_pred cchHHHHHHHHHCCCEEEEEeccc
Confidence 368889999999999999998876
No 393
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=32.79 E-value=60 Score=25.79 Aligned_cols=22 Identities=23% Similarity=0.385 Sum_probs=19.8
Q ss_pred CCHHHHHHHHHHHHhCCCcEEE
Q psy4717 37 ESTEDVEKVVQVAHDHNLVIIP 58 (90)
Q Consensus 37 ~s~~~v~~vv~~a~~~~i~v~~ 58 (90)
.+.+|++++++.|+++|+.|+.
T Consensus 78 Gt~~d~~~lv~~~h~~gi~vil 99 (551)
T PRK10933 78 GTLDDFDELVAQAKSRGIRIIL 99 (551)
T ss_pred CCHHHHHHHHHHHHHCCCEEEE
Confidence 5789999999999999999775
No 394
>cd08198 DHQS-like2 Dehydroquinate synthase (DHQS)-like. DHQS catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase-like proteins. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. The activity of DHQS requires NAD as cofactor. Proteins of this family share sequence similarity and functional motifs with that of dehydroquinate synthase, but the specific function has not been characterized.
Probab=32.72 E-value=68 Score=24.33 Aligned_cols=31 Identities=23% Similarity=0.457 Sum_probs=24.4
Q ss_pred EcCCH-HHHHHHHHHHHhCCC----cEEEEcCCCCC
Q psy4717 35 ITEST-EDVEKVVQVAHDHNL----VIIPFGGGTNV 65 (90)
Q Consensus 35 ~P~s~-~~v~~vv~~a~~~~i----~v~~~G~G~n~ 65 (90)
.+++. +.+.++++.+.+.+. .++.+|||+-.
T Consensus 77 ~~k~~~~~v~~i~~~l~~~~~~r~~~IIalGGG~v~ 112 (369)
T cd08198 77 ACKNDPDLVEALHAAINRHGIDRHSYVIAIGGGAVL 112 (369)
T ss_pred cCCChHHHHHHHHHHHHHcCCCcCcEEEEECChHHH
Confidence 34563 778899999998887 59999999854
No 395
>TIGR00160 MGSA methylglyoxal synthase. Methylglyoxal synthase (MGS) generates methylglyoxal (MG), a toxic metabolite (that may also be a regulatory metabolite and) that is detoxified, prinicipally, through a pathway involving glutathione and glyoxylase I. Totemeyer, et al. (MUID:98149311) propose that, during a loss of control over carbon flux, with accumulation of phosphorylated sugars and depletion of phosphate, as might happen during a rapid shift to a richer medium, MGS aids the cell by converting some dihydroxyacetone phosphate (DHAP) to MG and phosphate. This is therefore an alternative to triosephosphate isomerase and the remainder of the glycolytic pathway for the disposal of DHAP during the stress of a sudden increase in available sugars.
Probab=32.70 E-value=30 Score=23.04 Aligned_cols=18 Identities=17% Similarity=0.346 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHhCCCcEE
Q psy4717 40 EDVEKVVQVAHDHNLVII 57 (90)
Q Consensus 40 ~~v~~vv~~a~~~~i~v~ 57 (90)
.||+.+++.|.-+++|+.
T Consensus 91 pDi~aLlRlc~v~nIP~A 108 (143)
T TIGR00160 91 PDVKALLRLCTVWNIPLA 108 (143)
T ss_pred cCHHHHHHHHHhhCcccc
Confidence 789999999999999986
No 396
>PF01867 Cas_Cas1: CRISPR associated protein Cas1; InterPro: IPR002729 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents Cas1, which is a metal-dependent DNA-specific endonuclease []. Cas1 may play a role in the recognition, cleavage, and/or integration of foreign nucleic acids into CRISPRs.; PDB: 2YZS_A 3LFX_D 3PV9_E 3NKE_C 3NKD_A 3GOD_D.
Probab=32.60 E-value=33 Score=24.51 Aligned_cols=32 Identities=3% Similarity=0.083 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHhCCCcEEEEcCCCCCCCCcc
Q psy4717 39 TEDVEKVVQVAHDHNLVIIPFGGGTNVTGAVA 70 (90)
Q Consensus 39 ~~~v~~vv~~a~~~~i~v~~~G~G~n~~~~~~ 70 (90)
+.==.+++++|.++|+++..++......+...
T Consensus 44 ~~iSt~ai~~l~~~gI~v~~~~~~G~~~g~l~ 75 (282)
T PF01867_consen 44 VSISTAAIRLLSKNGIPVVFLDRRGRPYGRLL 75 (282)
T ss_dssp EEEEHHHHHHHHHTT-EEEEESTTSEEEEEEE
T ss_pred CCCCHHHHHHHHHCCCcEEEeCCCCCEEEEEE
Confidence 33347899999999999999998776654443
No 397
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=32.51 E-value=1.5e+02 Score=21.14 Aligned_cols=35 Identities=14% Similarity=0.093 Sum_probs=30.0
Q ss_pred CccEEEEcCCHHHHHHHHHHHHhCCCcEEEEcCCC
Q psy4717 29 GTRYWCITESTEDVEKVVQVAHDHNLVIIPFGGGT 63 (90)
Q Consensus 29 ~p~~vv~P~s~~~v~~vv~~a~~~~i~v~~~G~G~ 63 (90)
.+++|+--+.++.+.+.++.|-++|++++.-..|.
T Consensus 68 ~~DvVIdfT~p~~~~~~~~~al~~g~~vVigttg~ 102 (266)
T TIGR00036 68 DPDVLIDFTTPEGVLNHLKFALEHGVRLVVGTTGF 102 (266)
T ss_pred CCCEEEECCChHHHHHHHHHHHHCCCCEEEECCCC
Confidence 48999999999999999999999999998865554
No 398
>PTZ00376 aspartate aminotransferase; Provisional
Probab=32.49 E-value=53 Score=24.42 Aligned_cols=20 Identities=20% Similarity=0.380 Sum_probs=17.4
Q ss_pred CHHHHHHHHHHHHhCCCcEE
Q psy4717 38 STEDVEKVVQVAHDHNLVII 57 (90)
Q Consensus 38 s~~~v~~vv~~a~~~~i~v~ 57 (90)
|.+++.+++++|+++++.++
T Consensus 194 s~~~~~~l~~~a~~~~~~ii 213 (404)
T PTZ00376 194 TEEQWKEIADVMKRKNLIPF 213 (404)
T ss_pred CHHHHHHHHHHHHhCCcEEE
Confidence 67999999999999997654
No 399
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=32.48 E-value=1e+02 Score=20.79 Aligned_cols=34 Identities=18% Similarity=0.163 Sum_probs=25.4
Q ss_pred CccEEEE-cCCHHHHHHHHHHHHhCCCcEEEEcCC
Q psy4717 29 GTRYWCI-TESTEDVEKVVQVAHDHNLVIIPFGGG 62 (90)
Q Consensus 29 ~p~~vv~-P~s~~~v~~vv~~a~~~~i~v~~~G~G 62 (90)
+++.++. |.+.+....+++.+.+.++|++.++.-
T Consensus 55 ~vdgii~~~~~~~~~~~~i~~~~~~~ipvV~~~~~ 89 (273)
T cd06305 55 KVDAIIIQHGRAEVLKPWVKRALDAGIPVVAFDVD 89 (273)
T ss_pred CCCEEEEecCChhhhHHHHHHHHHcCCCEEEecCC
Confidence 4777766 445555667788899999999999763
No 400
>cd06346 PBP1_ABC_ligand_binding_like_11 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=32.48 E-value=1e+02 Score=21.66 Aligned_cols=33 Identities=12% Similarity=0.039 Sum_probs=27.3
Q ss_pred CccEEEEcCCHHHHHHHHHHHHhCCCcEEEEcC
Q psy4717 29 GTRYWCITESTEDVEKVVQVAHDHNLVIIPFGG 61 (90)
Q Consensus 29 ~p~~vv~P~s~~~v~~vv~~a~~~~i~v~~~G~ 61 (90)
.|++|+......+...+++-+++.|+.....++
T Consensus 192 ~pd~v~~~~~~~~~~~~~~~~~~~G~~~~~~~~ 224 (312)
T cd06346 192 GPDALVVIGYPETGSGILRSAYEQGLFDKFLLT 224 (312)
T ss_pred CCCEEEEecccchHHHHHHHHHHcCCCCceEee
Confidence 499999998889999999999999886545543
No 401
>PRK08960 hypothetical protein; Provisional
Probab=32.39 E-value=61 Score=23.79 Aligned_cols=20 Identities=5% Similarity=0.135 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHhCCCcEEE
Q psy4717 39 TEDVEKVVQVAHDHNLVIIP 58 (90)
Q Consensus 39 ~~~v~~vv~~a~~~~i~v~~ 58 (90)
.+++.+++++|+++++.++.
T Consensus 184 ~~~~~~l~~~~~~~~~~li~ 203 (387)
T PRK08960 184 RDELAALSQALRARGGHLVV 203 (387)
T ss_pred HHHHHHHHHHHHHcCCEEEE
Confidence 68999999999999986653
No 402
>cd06347 PBP1_ABC_ligand_binding_like_12 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=32.34 E-value=75 Score=22.18 Aligned_cols=34 Identities=9% Similarity=-0.056 Sum_probs=28.9
Q ss_pred CccEEEEcCCHHHHHHHHHHHHhCCCcEEEEcCC
Q psy4717 29 GTRYWCITESTEDVEKVVQVAHDHNLVIIPFGGG 62 (90)
Q Consensus 29 ~p~~vv~P~s~~~v~~vv~~a~~~~i~v~~~G~G 62 (90)
+.++|+-|.+......+..++.+.++|++..+..
T Consensus 67 ~v~aiiG~~~s~~~~~v~~~~~~~~ip~i~~~~~ 100 (334)
T cd06347 67 KVVAIIGPVTSGATLAAGPIAEDAKVPMITPSAT 100 (334)
T ss_pred CeEEEEcCCccHhHHHhHHHHHHCCCeEEcCCCC
Confidence 5788888888888888999999999999886654
No 403
>PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional
Probab=32.34 E-value=58 Score=25.18 Aligned_cols=26 Identities=12% Similarity=0.147 Sum_probs=21.5
Q ss_pred EcCCHHHHHHHHHHHHhCCCcEEEEc
Q psy4717 35 ITESTEDVEKVVQVAHDHNLVIIPFG 60 (90)
Q Consensus 35 ~P~s~~~v~~vv~~a~~~~i~v~~~G 60 (90)
.|-+.++++++.++|+++++.++.=+
T Consensus 193 ~v~s~~~l~~I~~ia~~~gi~li~Da 218 (460)
T PRK13238 193 QPVSMANLRAVYEIAKKYGIPVVIDA 218 (460)
T ss_pred cCCCHHHHHHHHHHHHHcCCEEEEEC
Confidence 44568999999999999999887643
No 404
>PRK07064 hypothetical protein; Provisional
Probab=32.30 E-value=1.5e+02 Score=23.11 Aligned_cols=26 Identities=15% Similarity=0.299 Sum_probs=21.7
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEcCCC
Q psy4717 38 STEDVEKVVQVAHDHNLVIIPFGGGT 63 (90)
Q Consensus 38 s~~~v~~vv~~a~~~~i~v~~~G~G~ 63 (90)
+.++++++++..+..+-|++..|+|-
T Consensus 189 ~~~~i~~~~~~l~~AkrPvi~~G~g~ 214 (544)
T PRK07064 189 DAAAVAELAERLAAARRPLLWLGGGA 214 (544)
T ss_pred CHHHHHHHHHHHHhCCCCEEEECCCh
Confidence 45678888888888889999999875
No 405
>PF01976 DUF116: Protein of unknown function DUF116; InterPro: IPR002829 These archaeal and bacterial proteins have no known function. Members of this family contain seven conserved cysteines and may also be an integral membrane protein.
Probab=32.29 E-value=48 Score=22.14 Aligned_cols=25 Identities=20% Similarity=0.267 Sum_probs=22.4
Q ss_pred HHHHHHHHHHhCCCcEEEEcCCCCC
Q psy4717 41 DVEKVVQVAHDHNLVIIPFGGGTNV 65 (90)
Q Consensus 41 ~v~~vv~~a~~~~i~v~~~G~G~n~ 65 (90)
.|.++++.+.++|+.+++.-|||..
T Consensus 74 ~Ig~l~~lae~~g~~v~i~~Ggt~a 98 (158)
T PF01976_consen 74 DIGDLKKLAEKYGYKVYIATGGTLA 98 (158)
T ss_pred chhHHHHHHHHcCCEEEEEcChHHH
Confidence 5889999999999999999999865
No 406
>TIGR00287 cas1 CRISPR-associated endonuclease Cas1. This model identifies CRISPR-associated protein Cas1, the most universal CRISPR system protein. CRISPR is an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, a system for heritable host defense by prokaryotic cells against phage and other foreign DNA. Cas1 is a metal-dependent DNA-specific endonuclease.
Probab=32.27 E-value=46 Score=24.32 Aligned_cols=34 Identities=15% Similarity=0.245 Sum_probs=26.6
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEEcCCCCCCCCcc
Q psy4717 37 ESTEDVEKVVQVAHDHNLVIIPFGGGTNVTGAVA 70 (90)
Q Consensus 37 ~s~~~v~~vv~~a~~~~i~v~~~G~G~n~~~~~~ 70 (90)
..+.==..++++|.++|+++..++...+..+...
T Consensus 42 g~~~lst~~l~~l~~~~I~v~f~~~~g~~~g~~~ 75 (323)
T TIGR00287 42 GGVSISSAAIRELAKRGIDIVFLGGDGNYLGRLS 75 (323)
T ss_pred CCCCcCHHHHHHHHHCCCeEEEECCCCcEEEEEe
Confidence 4444447899999999999999998877765544
No 407
>cd08169 DHQ-like Dehydroquinate synthase-like which includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. Dehydroquinate synthase-like. This group contains dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. They exhibit the dehydroquinate synthase structural fold. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes ne
Probab=32.26 E-value=71 Score=23.70 Aligned_cols=29 Identities=24% Similarity=0.426 Sum_probs=22.0
Q ss_pred CCHHHHHHHHHHHHhCC----CcEEEEcCCCCC
Q psy4717 37 ESTEDVEKVVQVAHDHN----LVIIPFGGGTNV 65 (90)
Q Consensus 37 ~s~~~v~~vv~~a~~~~----i~v~~~G~G~n~ 65 (90)
.+.+.+.++++.+.+.+ --++.+|||+-.
T Consensus 64 k~~~~v~~~~~~~~~~~~~r~d~IIaiGGGsv~ 96 (344)
T cd08169 64 KTFETVTRILERAIALGANRRTAIVAVGGGATG 96 (344)
T ss_pred CCHHHHHHHHHHHHHcCCCCCcEEEEECCcHHH
Confidence 37788899988888766 357778988744
No 408
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=32.26 E-value=1e+02 Score=18.16 Aligned_cols=33 Identities=15% Similarity=0.271 Sum_probs=25.5
Q ss_pred CccEEEEcCCHHH--HHHHHHHHHhCCCcEEEEcC
Q psy4717 29 GTRYWCITESTED--VEKVVQVAHDHNLVIIPFGG 61 (90)
Q Consensus 29 ~p~~vv~P~s~~~--v~~vv~~a~~~~i~v~~~G~ 61 (90)
.+..|+..++.++ ...+..+|+++++|+.-++.
T Consensus 27 kaklViiA~D~~~~~~~~i~~~c~~~~Vp~~~~~s 61 (82)
T PRK13602 27 SVKEVVVAEDADPRLTEKVEALANEKGVPVSKVDS 61 (82)
T ss_pred CeeEEEEECCCCHHHHHHHHHHHHHcCCCEEEECC
Confidence 3677777776655 35688899999999998874
No 409
>TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases. This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley.
Probab=32.23 E-value=61 Score=24.01 Aligned_cols=21 Identities=29% Similarity=0.499 Sum_probs=17.5
Q ss_pred CHHHHHHHHHHHHhCCCcEEE
Q psy4717 38 STEDVEKVVQVAHDHNLVIIP 58 (90)
Q Consensus 38 s~~~v~~vv~~a~~~~i~v~~ 58 (90)
+.+++++++++|+++++.++.
T Consensus 187 ~~~~~~~i~~~a~~~~~~ii~ 207 (403)
T TIGR01265 187 SRDHLQKIAEVARKLGIPIIA 207 (403)
T ss_pred CHHHHHHHHHHHHHCCCEEEE
Confidence 347899999999999987754
No 410
>cd06338 PBP1_ABC_ligand_binding_like_5 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT); however their ligand specificity has not been determined experimentally.
Probab=32.21 E-value=1.2e+02 Score=21.53 Aligned_cols=31 Identities=10% Similarity=0.046 Sum_probs=26.0
Q ss_pred CccEEEEcCCHHHHHHHHHHHHhCCCcEEEE
Q psy4717 29 GTRYWCITESTEDVEKVVQVAHDHNLVIIPF 59 (90)
Q Consensus 29 ~p~~vv~P~s~~~v~~vv~~a~~~~i~v~~~ 59 (90)
+|++|+.....+++..+++.+++.++....+
T Consensus 196 ~~d~i~~~~~~~~~~~~~~~~~~~g~~~~~~ 226 (345)
T cd06338 196 GPDAVVVAGHFPDAVLLVRQMKELGYNPKAL 226 (345)
T ss_pred CCCEEEECCcchhHHHHHHHHHHcCCCCCEE
Confidence 4899999999999999999999988754333
No 411
>cd05009 SIS_GlmS_GlmD_2 SIS (Sugar ISomerase) domain repeat 2 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=32.13 E-value=76 Score=19.72 Aligned_cols=34 Identities=12% Similarity=0.195 Sum_probs=24.7
Q ss_pred ccEEEEcCC--HHHHHHHHHHHHhCCCcEEEEcCCC
Q psy4717 30 TRYWCITES--TEDVEKVVQVAHDHNLVIIPFGGGT 63 (90)
Q Consensus 30 p~~vv~P~s--~~~v~~vv~~a~~~~i~v~~~G~G~ 63 (90)
+-.++.+.. .+.+.++++++++.+.+++.+.+..
T Consensus 64 ~vi~is~~g~t~~~~~~~~~~~~~~~~~vi~it~~~ 99 (153)
T cd05009 64 PVIFLAPEDRLEEKLESLIKEVKARGAKVIVITDDG 99 (153)
T ss_pred cEEEEecCChhHHHHHHHHHHHHHcCCEEEEEecCC
Confidence 334455433 4568999999999999999887644
No 412
>PTZ00365 60S ribosomal protein L7Ae-like; Provisional
Probab=32.10 E-value=70 Score=23.48 Aligned_cols=35 Identities=11% Similarity=0.228 Sum_probs=28.1
Q ss_pred ccEEEEcCCHHHHHHHH---HHHHhCCCcEEEEcCCCC
Q psy4717 30 TRYWCITESTEDVEKVV---QVAHDHNLVIIPFGGGTN 64 (90)
Q Consensus 30 p~~vv~P~s~~~v~~vv---~~a~~~~i~v~~~G~G~n 64 (90)
+..|+..+++++..... ..|+..++|+...++-.-
T Consensus 149 AkLVIIA~DVsP~t~kk~LP~LC~k~~VPY~iv~sK~e 186 (266)
T PTZ00365 149 AKLVVIAHDVDPIELVCFLPALCRKKEVPYCIIKGKSR 186 (266)
T ss_pred ccEEEEeCCCCHHHHHHHHHHHHhccCCCEEEECCHHH
Confidence 88899999876665543 899999999999887443
No 413
>PF04472 DUF552: Protein of unknown function (DUF552); InterPro: IPR007561 This entry represents a cell division protein, designated SepF, which is conserved in Gram-positive bacteria. SepF accumulates at the cell division site in an FtsZ-dependent manner and is required for proper septum formation []. Mutants are viable but the formation of the septum is much slower and occurs with a very abnormal morphology. This entry also includes archaeal related proteins of unknown function.; GO: 0000917 barrier septum formation; PDB: 3P04_A.
Probab=32.09 E-value=59 Score=18.53 Aligned_cols=21 Identities=19% Similarity=0.197 Sum_probs=14.7
Q ss_pred EEEEcCCHHHHHHHHHHHHhC
Q psy4717 32 YWCITESTEDVEKVVQVAHDH 52 (90)
Q Consensus 32 ~vv~P~s~~~v~~vv~~a~~~ 52 (90)
.++.|++-+|+.++++..++.
T Consensus 2 ~v~~p~~~~D~~~i~~~l~~g 22 (73)
T PF04472_consen 2 VVFEPKSFEDAREIVDALREG 22 (73)
T ss_dssp EEEE-SSGGGHHHHHHHHHTT
T ss_pred EEEeeCCHHHHHHHHHHHHcC
Confidence 367788888888887777664
No 414
>PRK07777 aminotransferase; Validated
Probab=31.98 E-value=62 Score=23.71 Aligned_cols=21 Identities=19% Similarity=0.591 Sum_probs=17.6
Q ss_pred CHHHHHHHHHHHHhCCCcEEE
Q psy4717 38 STEDVEKVVQVAHDHNLVIIP 58 (90)
Q Consensus 38 s~~~v~~vv~~a~~~~i~v~~ 58 (90)
+.+++.+++++|+++++.++.
T Consensus 177 ~~~~~~~l~~~~~~~~~~li~ 197 (387)
T PRK07777 177 TAAELAAIAELAVEHDLLVIT 197 (387)
T ss_pred CHHHHHHHHHHHHhcCcEEEE
Confidence 458999999999999987654
No 415
>PRK06108 aspartate aminotransferase; Provisional
Probab=31.98 E-value=61 Score=23.47 Aligned_cols=21 Identities=24% Similarity=0.476 Sum_probs=17.9
Q ss_pred CHHHHHHHHHHHHhCCCcEEE
Q psy4717 38 STEDVEKVVQVAHDHNLVIIP 58 (90)
Q Consensus 38 s~~~v~~vv~~a~~~~i~v~~ 58 (90)
+.+++.+++++|+++++.++.
T Consensus 176 ~~~~~~~l~~~~~~~~~~li~ 196 (382)
T PRK06108 176 SRDDLRAILAHCRRHGLWIVA 196 (382)
T ss_pred CHHHHHHHHHHHHHCCcEEEE
Confidence 578999999999999987653
No 416
>cd06323 PBP1_ribose_binding Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group are belonging to the type I periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability.
Probab=31.95 E-value=1.1e+02 Score=20.33 Aligned_cols=33 Identities=15% Similarity=0.272 Sum_probs=23.8
Q ss_pred CccEEEE-cCCHHHHHHHHHHHHhCCCcEEEEcC
Q psy4717 29 GTRYWCI-TESTEDVEKVVQVAHDHNLVIIPFGG 61 (90)
Q Consensus 29 ~p~~vv~-P~s~~~v~~vv~~a~~~~i~v~~~G~ 61 (90)
+++.++. |.......+.++.+.+.++|++..+.
T Consensus 55 ~~dgii~~~~~~~~~~~~l~~l~~~~ipvv~~~~ 88 (268)
T cd06323 55 GVDAIIINPTDSDAVVPAVKAANEAGIPVFTIDR 88 (268)
T ss_pred CCCEEEEcCCChHHHHHHHHHHHHCCCcEEEEcc
Confidence 4676444 55555556778888889999999865
No 417
>PLN02450 1-aminocyclopropane-1-carboxylate synthase
Probab=31.92 E-value=60 Score=24.97 Aligned_cols=20 Identities=15% Similarity=0.356 Sum_probs=17.2
Q ss_pred CHHHHHHHHHHHHhCCCcEE
Q psy4717 38 STEDVEKVVQVAHDHNLVII 57 (90)
Q Consensus 38 s~~~v~~vv~~a~~~~i~v~ 57 (90)
+.+++.+++++|+++++.++
T Consensus 209 s~e~l~~ll~~a~~~~~~iI 228 (468)
T PLN02450 209 TRTELNLLVDFITAKNIHLI 228 (468)
T ss_pred CHHHHHHHHHHHHHCCcEEE
Confidence 45899999999999998765
No 418
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=31.89 E-value=92 Score=22.08 Aligned_cols=28 Identities=25% Similarity=0.272 Sum_probs=23.6
Q ss_pred cCCHHHHHHHHHHHHhCCCcEEEEcCCC
Q psy4717 36 TESTEDVEKVVQVAHDHNLVIIPFGGGT 63 (90)
Q Consensus 36 P~s~~~v~~vv~~a~~~~i~v~~~G~G~ 63 (90)
.+...++.++++.|+++|++++.+.+-.
T Consensus 197 sG~t~~~~~~~~~ak~~g~~ii~IT~~~ 224 (292)
T PRK11337 197 SGRTSDVIEAVELAKKNGAKIICITNSY 224 (292)
T ss_pred CCCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 3456889999999999999999987644
No 419
>cd06317 PBP1_ABC_sugar_binding_like_8 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Pperiplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=31.86 E-value=83 Score=21.18 Aligned_cols=33 Identities=3% Similarity=-0.089 Sum_probs=24.1
Q ss_pred CccEE-EEcCCHHHHHHHHHHHHhCCCcEEEEcC
Q psy4717 29 GTRYW-CITESTEDVEKVVQVAHDHNLVIIPFGG 61 (90)
Q Consensus 29 ~p~~v-v~P~s~~~v~~vv~~a~~~~i~v~~~G~ 61 (90)
+++.+ +.|.+.+...+.++.+.+.++|++..+.
T Consensus 56 ~vdgiii~~~~~~~~~~~l~~~~~~~iPvV~~~~ 89 (275)
T cd06317 56 KVDGIILWPTDGQAYIPGLRKAKQAGIPVVITNS 89 (275)
T ss_pred CCCEEEEecCCccccHHHHHHHHHCCCcEEEeCC
Confidence 47766 4465555556778888999999998865
No 420
>PLN02368 alanine transaminase
Probab=31.84 E-value=57 Score=24.72 Aligned_cols=20 Identities=15% Similarity=0.453 Sum_probs=17.4
Q ss_pred CHHHHHHHHHHHHhCCCcEE
Q psy4717 38 STEDVEKVVQVAHDHNLVII 57 (90)
Q Consensus 38 s~~~v~~vv~~a~~~~i~v~ 57 (90)
+.+++++++++|+++++.++
T Consensus 228 s~e~l~~l~~~a~~~~~~II 247 (407)
T PLN02368 228 SEANLREILKFCYQERLVLL 247 (407)
T ss_pred CHHHHHHHHHHHHHcCCEEE
Confidence 57999999999999998654
No 421
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=31.83 E-value=33 Score=20.85 Aligned_cols=17 Identities=12% Similarity=0.301 Sum_probs=13.7
Q ss_pred HHHHHHHHHhCCCcEEE
Q psy4717 42 VEKVVQVAHDHNLVIIP 58 (90)
Q Consensus 42 v~~vv~~a~~~~i~v~~ 58 (90)
..+++++|+++++|+..
T Consensus 17 ~~eLlkyskqy~i~it~ 33 (85)
T PF11116_consen 17 AKELLKYSKQYNISITK 33 (85)
T ss_pred HHHHHHHHHHhCCCCCH
Confidence 35789999999998753
No 422
>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=31.79 E-value=48 Score=25.59 Aligned_cols=28 Identities=11% Similarity=0.080 Sum_probs=22.2
Q ss_pred EEEEcCCHH----HHHHHHHHHHhCCCcEEEE
Q psy4717 32 YWCITESTE----DVEKVVQVAHDHNLVIIPF 59 (90)
Q Consensus 32 ~vv~P~s~~----~v~~vv~~a~~~~i~v~~~ 59 (90)
++..|.+.- |+.++.++|++++++++.=
T Consensus 152 ~~e~pgnP~~~v~Di~~I~~iA~~~gi~livD 183 (432)
T PRK06702 152 YAESLGNPAMNVLNFKEFSDAAKELEVPFIVD 183 (432)
T ss_pred EEEcCCCccccccCHHHHHHHHHHcCCEEEEE
Confidence 345577777 8999999999999987653
No 423
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=31.79 E-value=90 Score=24.85 Aligned_cols=33 Identities=9% Similarity=-0.072 Sum_probs=26.4
Q ss_pred EEEEcCCHHHHHHHHHHHHhC-CCcEEEEcCCCC
Q psy4717 32 YWCITESTEDVEKVVQVAHDH-NLVIIPFGGGTN 64 (90)
Q Consensus 32 ~vv~P~s~~~v~~vv~~a~~~-~i~v~~~G~G~n 64 (90)
.|+.|.+..|+..++++|-++ +-|++++-....
T Consensus 407 ~V~~Psd~~e~~~~l~~a~~~~~~P~~ir~~r~~ 440 (580)
T PRK05444 407 VIMAPSDENELRQMLYTALAYDDGPIAIRYPRGN 440 (580)
T ss_pred EEEeeCCHHHHHHHHHHHHhCCCCcEEEEecCCC
Confidence 589999999999999999865 567776655443
No 424
>PRK07681 aspartate aminotransferase; Provisional
Probab=31.77 E-value=59 Score=24.03 Aligned_cols=19 Identities=21% Similarity=0.569 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHhCCCcEE
Q psy4717 39 TEDVEKVVQVAHDHNLVII 57 (90)
Q Consensus 39 ~~~v~~vv~~a~~~~i~v~ 57 (90)
.+++++++++|+++++.++
T Consensus 185 ~~~~~~i~~~a~~~~~~iI 203 (399)
T PRK07681 185 EDFFKEVIAFAKKHNIIVV 203 (399)
T ss_pred HHHHHHHHHHHHHcCeEEE
Confidence 5889999999999998665
No 425
>cd03062 TRX_Fd_Sucrase TRX-like [2Fe-2S] Ferredoxin (Fd) family, Sucrase subfamily; composed of proteins with similarity to a novel plant enzyme, isolated from potato, which contains a Fd-like domain and exhibits sucrolytic activity. The putative active site of the Fd-like domain of the enzyme contains two cysteines and two histidines for possible binding to iron-sulfur clusters, compared to four cysteines present in the active site of Fd.
Probab=31.74 E-value=84 Score=18.97 Aligned_cols=27 Identities=15% Similarity=0.035 Sum_probs=21.7
Q ss_pred ccEEEEc---------CCHHHHHHHHHHHHhCCCcE
Q psy4717 30 TRYWCIT---------ESTEDVEKVVQVAHDHNLVI 56 (90)
Q Consensus 30 p~~vv~P---------~s~~~v~~vv~~a~~~~i~v 56 (90)
|-++++| -+++++.++|+..-..+.++
T Consensus 54 p~vvvyP~~~g~wy~~v~p~~v~~Iv~~hl~~g~~v 89 (97)
T cd03062 54 GNVIIYPKGDGIWYGRVTPEHVPPIVDRLILGGKII 89 (97)
T ss_pred CEEEEEeCCCeeEEeecCHHHHHHHHHHHhcCCcCC
Confidence 8999999 58999999998776655443
No 426
>cd01536 PBP1_ABC_sugar_binding_like Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. The members of this family function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea. The sugar binding domain is also homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. Moreover, this periplasmic binding domain, also known as Venus flytrap domain, undergoes transition from an open to a closed conformational state upon the binding of ligands such as lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. This family also includes the periplasmic binding domain of autoinducer-2 (AI-2
Probab=31.65 E-value=1.2e+02 Score=20.00 Aligned_cols=35 Identities=6% Similarity=0.103 Sum_probs=25.9
Q ss_pred CccEEE-EcCCHHHHHHHHHHHHhCCCcEEEEcCCC
Q psy4717 29 GTRYWC-ITESTEDVEKVVQVAHDHNLVIIPFGGGT 63 (90)
Q Consensus 29 ~p~~vv-~P~s~~~v~~vv~~a~~~~i~v~~~G~G~ 63 (90)
.++.++ .+.+.+.....++.+++.++|++..+...
T Consensus 55 ~vdgvi~~~~~~~~~~~~~~~l~~~~ip~V~~~~~~ 90 (267)
T cd01536 55 GVDGIIISPVDSAALTPALKKANAAGIPVVTVDSDI 90 (267)
T ss_pred CCCEEEEeCCCchhHHHHHHHHHHCCCcEEEecCCC
Confidence 466665 45555666678888899999999987754
No 427
>cd06502 TA_like Low-specificity threonine aldolase (TA). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.
Probab=31.65 E-value=63 Score=22.85 Aligned_cols=21 Identities=10% Similarity=0.297 Sum_probs=18.7
Q ss_pred CHHHHHHHHHHHHhCCCcEEE
Q psy4717 38 STEDVEKVVQVAHDHNLVIIP 58 (90)
Q Consensus 38 s~~~v~~vv~~a~~~~i~v~~ 58 (90)
+.+++.+++++|+++++.+++
T Consensus 144 ~~~~l~~i~~~~~~~~~~liv 164 (338)
T cd06502 144 PLDELKAISALAKENGLPLHL 164 (338)
T ss_pred CHHHHHHHHHHHHHcCCeEee
Confidence 679999999999999988776
No 428
>PRK10785 maltodextrin glucosidase; Provisional
Probab=31.63 E-value=64 Score=25.86 Aligned_cols=22 Identities=0% Similarity=0.157 Sum_probs=20.2
Q ss_pred CCHHHHHHHHHHHHhCCCcEEE
Q psy4717 37 ESTEDVEKVVQVAHDHNLVIIP 58 (90)
Q Consensus 37 ~s~~~v~~vv~~a~~~~i~v~~ 58 (90)
.+.++++++++.|++.|+.|+.
T Consensus 223 Gt~~df~~Lv~~aH~rGikVil 244 (598)
T PRK10785 223 GGDAALLRLRHATQQRGMRLVL 244 (598)
T ss_pred CCHHHHHHHHHHHHHCCCEEEE
Confidence 5789999999999999999875
No 429
>PRK15482 transcriptional regulator MurR; Provisional
Probab=31.46 E-value=94 Score=22.02 Aligned_cols=32 Identities=9% Similarity=0.118 Sum_probs=26.2
Q ss_pred EEEEcCCHHHHHHHHHHHHhCCCcEEEEcCCC
Q psy4717 32 YWCITESTEDVEKVVQVAHDHNLVIIPFGGGT 63 (90)
Q Consensus 32 ~vv~P~s~~~v~~vv~~a~~~~i~v~~~G~G~ 63 (90)
++-+++...++.++++.|+++|.+++.+..-.
T Consensus 188 ~iS~sg~t~~~~~~~~~a~~~g~~iI~IT~~~ 219 (285)
T PRK15482 188 AISYSGSKKEIVLCAEAARKQGATVIAITSLA 219 (285)
T ss_pred EEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 34456677999999999999999999987643
No 430
>cd06332 PBP1_aromatic_compounds_like Type I periplasmic binding proteins of active transport systems that are predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes. This group includes the type I periplasmic binding proteins of active transport systems that are predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes; their substrate specificities are not well characterized, however. Members also exhibit close similarity to active transport systems for short chain amides and/or urea found in bacteria and archaea.
Probab=31.38 E-value=90 Score=21.79 Aligned_cols=36 Identities=11% Similarity=0.002 Sum_probs=28.4
Q ss_pred CccEEEEcCCHHHHHHHHHHHHhCCCcEEEEcCCCC
Q psy4717 29 GTRYWCITESTEDVEKVVQVAHDHNLVIIPFGGGTN 64 (90)
Q Consensus 29 ~p~~vv~P~s~~~v~~vv~~a~~~~i~v~~~G~G~n 64 (90)
++++|+-|.+......+...+.+.++|++..+.+..
T Consensus 65 ~v~~iig~~~s~~~~~~~~~~~~~~ip~v~~~~~~~ 100 (333)
T cd06332 65 KVDVVVGPVFSNVALAVVPSLTESGTFLISPNAGPS 100 (333)
T ss_pred CCcEEEcCCccHHHHHHHHHHhhcCCeEEecCCCCc
Confidence 477788886666677888999999999988776554
No 431
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=31.34 E-value=64 Score=26.45 Aligned_cols=29 Identities=21% Similarity=0.320 Sum_probs=24.3
Q ss_pred ccEEEEcC----CHHHHHHHHHHHHhCCCcEEE
Q psy4717 30 TRYWCITE----STEDVEKVVQVAHDHNLVIIP 58 (90)
Q Consensus 30 p~~vv~P~----s~~~v~~vv~~a~~~~i~v~~ 58 (90)
+-....|+ +.+|++++|..|++.||.|+.
T Consensus 200 ~~g~yAp~sryGtPedfk~fVD~aH~~GIgViL 232 (628)
T COG0296 200 GTGYYAPTSRYGTPEDFKALVDAAHQAGIGVIL 232 (628)
T ss_pred cceeccccccCCCHHHHHHHHHHHHHcCCEEEE
Confidence 56666665 569999999999999999876
No 432
>PRK05402 glycogen branching enzyme; Provisional
Probab=31.30 E-value=64 Score=26.53 Aligned_cols=23 Identities=17% Similarity=0.261 Sum_probs=20.3
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEE
Q psy4717 37 ESTEDVEKVVQVAHDHNLVIIPF 59 (90)
Q Consensus 37 ~s~~~v~~vv~~a~~~~i~v~~~ 59 (90)
.+.+|++++|+.|+++||.|+.=
T Consensus 312 Gt~~dfk~lV~~~H~~Gi~VilD 334 (726)
T PRK05402 312 GTPDDFRYFVDACHQAGIGVILD 334 (726)
T ss_pred CCHHHHHHHHHHHHHCCCEEEEE
Confidence 46899999999999999998753
No 433
>cd06334 PBP1_ABC_ligand_binding_like_1 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=31.27 E-value=1.3e+02 Score=21.87 Aligned_cols=33 Identities=15% Similarity=-0.012 Sum_probs=28.1
Q ss_pred CccEEEEcCCHHHHHHHHHHHHhCCCcEEEEcC
Q psy4717 29 GTRYWCITESTEDVEKVVQVAHDHNLVIIPFGG 61 (90)
Q Consensus 29 ~p~~vv~P~s~~~v~~vv~~a~~~~i~v~~~G~ 61 (90)
+|++|+......+...+++-+++.|+...+++.
T Consensus 195 ~pd~V~~~~~~~~~~~~~~~~~~~G~~~~~~~~ 227 (351)
T cd06334 195 GPDYVILWGWGVMNPVAIKEAKRVGLDDKFIGN 227 (351)
T ss_pred CCCEEEEecccchHHHHHHHHHHcCCCceEEEe
Confidence 499999999999999999999999987555543
No 434
>PF01094 ANF_receptor: Receptor family ligand binding region The Prosite family is a sub-family of the Pfam family; InterPro: IPR001828 This describes a ligand binding domain and includes extracellular ligand binding domains of a wide range of receptors, as well as the bacterial amino acid binding proteins of known structure [].; PDB: 3SAJ_D 3Q41_B 3QEM_C 3QEK_A 3QEL_C 3MQ4_A 3QLV_G 3OM1_A 3QLU_A 3OM0_A ....
Probab=31.26 E-value=1e+02 Score=21.48 Aligned_cols=38 Identities=18% Similarity=0.150 Sum_probs=31.9
Q ss_pred cCccEEEEcCCHHHHHHHHHHHHhCCCcEEEEcCCCCC
Q psy4717 28 IGTRYWCITESTEDVEKVVQVAHDHNLVIIPFGGGTNV 65 (90)
Q Consensus 28 ~~p~~vv~P~s~~~v~~vv~~a~~~~i~v~~~G~G~n~ 65 (90)
.+..+|+=|.+.+....+..++...++|++-.+..+..
T Consensus 50 ~~v~aviGp~~~~~~~~~~~~~~~~~ip~is~~~~~~~ 87 (348)
T PF01094_consen 50 QGVVAVIGPSCSSSAEAVASLASEWNIPQISPGSTSPS 87 (348)
T ss_dssp HTECEEEETSSHHHHHHHHHHHHHTT-EEEESSGGSGG
T ss_pred CCcEEEECCCcccccchhheeecccccceeeccccccc
Confidence 35889999999999999999999999999998755543
No 435
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=31.20 E-value=58 Score=20.36 Aligned_cols=21 Identities=19% Similarity=0.344 Sum_probs=17.3
Q ss_pred HHHHHHHHhCCCcEEEEcCCC
Q psy4717 43 EKVVQVAHDHNLVIIPFGGGT 63 (90)
Q Consensus 43 ~~vv~~a~~~~i~v~~~G~G~ 63 (90)
.++++.|+++++|++-.--..
T Consensus 89 ~~~i~~A~~~~lPli~ip~~~ 109 (123)
T PF07905_consen 89 EEIIELADELGLPLIEIPWEV 109 (123)
T ss_pred HHHHHHHHHcCCCEEEeCCCC
Confidence 678899999999998876543
No 436
>PRK09265 aminotransferase AlaT; Validated
Probab=31.18 E-value=65 Score=23.84 Aligned_cols=20 Identities=45% Similarity=0.760 Sum_probs=17.3
Q ss_pred CHHHHHHHHHHHHhCCCcEE
Q psy4717 38 STEDVEKVVQVAHDHNLVII 57 (90)
Q Consensus 38 s~~~v~~vv~~a~~~~i~v~ 57 (90)
+.+++.+++++|+++++.++
T Consensus 186 ~~~~~~~i~~~a~~~~~~ii 205 (404)
T PRK09265 186 SKELLEEIVEIARQHNLIIF 205 (404)
T ss_pred CHHHHHHHHHHHHHCCCEEE
Confidence 46889999999999998765
No 437
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=31.12 E-value=99 Score=22.52 Aligned_cols=29 Identities=7% Similarity=0.195 Sum_probs=23.4
Q ss_pred ccEEEEcCCHHHHHHHHHHHHhCCCcEEEE
Q psy4717 30 TRYWCITESTEDVEKVVQVAHDHNLVIIPF 59 (90)
Q Consensus 30 p~~vv~P~s~~~v~~vv~~a~~~~i~v~~~ 59 (90)
|++++.-....|-.+ ++.|++.|||++.+
T Consensus 157 Pd~l~ViDp~~e~iA-v~EA~klgIPVvAl 185 (252)
T COG0052 157 PDVLFVIDPRKEKIA-VKEANKLGIPVVAL 185 (252)
T ss_pred CCEEEEeCCcHhHHH-HHHHHHcCCCEEEE
Confidence 998888877777665 45699999999886
No 438
>PRK08636 aspartate aminotransferase; Provisional
Probab=31.01 E-value=65 Score=23.88 Aligned_cols=20 Identities=25% Similarity=0.353 Sum_probs=17.3
Q ss_pred CHHHHHHHHHHHHhCCCcEE
Q psy4717 38 STEDVEKVVQVAHDHNLVII 57 (90)
Q Consensus 38 s~~~v~~vv~~a~~~~i~v~ 57 (90)
|.+++.+++++|+++++.++
T Consensus 193 s~~~~~~l~~~a~~~~~~II 212 (403)
T PRK08636 193 EKSFYERLVALAKKERFYII 212 (403)
T ss_pred CHHHHHHHHHHHHHcCcEEE
Confidence 46999999999999998765
No 439
>PRK08912 hypothetical protein; Provisional
Probab=30.95 E-value=64 Score=23.65 Aligned_cols=20 Identities=20% Similarity=0.416 Sum_probs=16.9
Q ss_pred CHHHHHHHHHHHHhCCCcEE
Q psy4717 38 STEDVEKVVQVAHDHNLVII 57 (90)
Q Consensus 38 s~~~v~~vv~~a~~~~i~v~ 57 (90)
+.+++.+++++|+++++.++
T Consensus 177 s~~~~~~i~~~~~~~~~~ii 196 (387)
T PRK08912 177 PREELALLAEFCQRHDAVAI 196 (387)
T ss_pred CHHHHHHHHHHHHHCCeEEE
Confidence 35899999999999998664
No 440
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=30.95 E-value=66 Score=25.86 Aligned_cols=23 Identities=17% Similarity=0.226 Sum_probs=20.1
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEE
Q psy4717 37 ESTEDVEKVVQVAHDHNLVIIPF 59 (90)
Q Consensus 37 ~s~~~v~~vv~~a~~~~i~v~~~ 59 (90)
.+.+|++++|+.|+++||.|+.=
T Consensus 203 Gt~~dlk~lV~~~H~~Gi~VilD 225 (613)
T TIGR01515 203 GTPDDFMYFVDACHQAGIGVILD 225 (613)
T ss_pred CCHHHHHHHHHHHHHCCCEEEEE
Confidence 46799999999999999998753
No 441
>PRK14459 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=30.85 E-value=1.4e+02 Score=22.76 Aligned_cols=65 Identities=11% Similarity=0.024 Sum_probs=42.6
Q ss_pred cchhHHHHHHHHhccCc-cccceeeecCc--cEEEEcCCHHHHHHHHHHHHhCCCcEEEEcC-CCCCCC
Q psy4717 3 STEDVEKVVQVAHDHNL-VVNHQAIFIGT--RYWCITESTEDVEKVVQVAHDHNLVIIPFGG-GTNVTG 67 (90)
Q Consensus 3 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~p--~~vv~P~s~~~v~~vv~~a~~~~i~v~~~G~-G~n~~~ 67 (90)
|-++.++|++...+... ...-+.+...| ..=+.+.+.+.+.+..+...++|+++.++-. |..+.+
T Consensus 295 s~e~a~~L~~llk~~~~~~~~VNLIpyNp~~~~~y~~~~~~~~~~F~~~L~~~gi~~tiR~~~G~dI~a 363 (373)
T PRK14459 295 QPWRADLLGKKLHGRGGGWVHVNLIPLNPTPGSKWTASPPEVEREFVRRLRAAGVPCTVRDTRGQEIDG 363 (373)
T ss_pred CHHHHHHHHHHHhhccCCCeEEEEEccCCCCCCCCcCCCHHHHHHHHHHHHHCCCeEEeeCCCCcCHhh
Confidence 44667778886665521 11123333333 3346788899999999999999999998754 666543
No 442
>PRK08175 aminotransferase; Validated
Probab=30.76 E-value=64 Score=23.79 Aligned_cols=21 Identities=29% Similarity=0.393 Sum_probs=18.6
Q ss_pred CHHHHHHHHHHHHhCCCcEEE
Q psy4717 38 STEDVEKVVQVAHDHNLVIIP 58 (90)
Q Consensus 38 s~~~v~~vv~~a~~~~i~v~~ 58 (90)
+.+++.+++++|+++++.++.
T Consensus 182 ~~~~~~~i~~~a~~~~i~ii~ 202 (395)
T PRK08175 182 ELEFFEKVVALAKRYDVLVVH 202 (395)
T ss_pred CHHHHHHHHHHHHHcCcEEEE
Confidence 579999999999999988775
No 443
>PRK05839 hypothetical protein; Provisional
Probab=30.72 E-value=65 Score=23.64 Aligned_cols=20 Identities=30% Similarity=0.546 Sum_probs=17.4
Q ss_pred CHHHHHHHHHHHHhCCCcEE
Q psy4717 38 STEDVEKVVQVAHDHNLVII 57 (90)
Q Consensus 38 s~~~v~~vv~~a~~~~i~v~ 57 (90)
+.+++.+++++|+++++.++
T Consensus 173 s~~~l~~i~~~~~~~~~~ii 192 (374)
T PRK05839 173 SLEELIEWVKLALKHDFILI 192 (374)
T ss_pred CHHHHHHHHHHHHHcCCEEE
Confidence 46899999999999998765
No 444
>PRK01278 argD acetylornithine transaminase protein; Provisional
Probab=30.72 E-value=68 Score=23.58 Aligned_cols=22 Identities=18% Similarity=0.300 Sum_probs=18.7
Q ss_pred CCHHHHHHHHHHHHhCCCcEEE
Q psy4717 37 ESTEDVEKVVQVAHDHNLVIIP 58 (90)
Q Consensus 37 ~s~~~v~~vv~~a~~~~i~v~~ 58 (90)
-+.+.++++.++|+++++.++.
T Consensus 193 ~~~~~l~~l~~l~~~~g~~lI~ 214 (389)
T PRK01278 193 APDEFLKGLRQLCDENGLLLIF 214 (389)
T ss_pred CCHHHHHHHHHHHHHcCCEEEE
Confidence 3568999999999999998764
No 445
>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....
Probab=30.71 E-value=69 Score=22.93 Aligned_cols=22 Identities=27% Similarity=0.469 Sum_probs=18.6
Q ss_pred CHHHHHHHHHHHHhCCCcEEEE
Q psy4717 38 STEDVEKVVQVAHDHNLVIIPF 59 (90)
Q Consensus 38 s~~~v~~vv~~a~~~~i~v~~~ 59 (90)
+.+++.+++++|+++++.++.=
T Consensus 166 ~~~~l~~l~~~~~~~~~~ii~D 187 (363)
T PF00155_consen 166 SLEELRELAELAREYNIIIIVD 187 (363)
T ss_dssp -HHHHHHHHHHHHHTTSEEEEE
T ss_pred ccccccchhhhhcccccceeee
Confidence 5699999999999999888763
No 446
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=30.68 E-value=1.8e+02 Score=23.15 Aligned_cols=29 Identities=24% Similarity=0.378 Sum_probs=24.8
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEcCCCCCC
Q psy4717 38 STEDVEKVVQVAHDHNLVIIPFGGGTNVT 66 (90)
Q Consensus 38 s~~~v~~vv~~a~~~~i~v~~~G~G~n~~ 66 (90)
+.+++.+++++.+..+-|++..|+|-...
T Consensus 188 ~~~~i~~~~~~L~~AkrPvIl~G~g~~~~ 216 (588)
T TIGR01504 188 TRAQIEKAVEMLNAAERPLIVAGGGVINA 216 (588)
T ss_pred CHHHHHHHHHHHHhCCCcEEEECCCcchh
Confidence 56789999999999999999999997643
No 447
>PF00491 Arginase: Arginase family; InterPro: IPR006035 The ureohydrolase superfamily includes arginase (3.5.3.1 from EC), agmatinase (3.5.3.11 from EC), formiminoglutamase (3.5.3.8 from EC) and proclavaminate amidinohydrolase (3.5.3.22 from EC) []. These enzymes share a 3-layer alpha-beta-alpha structure [, , ], and play important roles in arginine/agmatine metabolism, the urea cycle, histidine degradation, and other pathways. Arginase, which catalyses the conversion of arginine to urea and ornithine, is one of the five members of the urea cycle enzymes that convert ammonia to urea as the principal product of nitrogen excretion []. There are several arginase isozymes that differ in catalytic, molecular and immunological properties. Deficiency in the liver isozyme leads to argininemia, which is usually associated with hyperammonemia. Agmatinase hydrolyses agmatine to putrescine, the precursor for the biosynthesis of higher polyamines, spermidine and spermine. In addition, agmatine may play an important regulatory role in mammals. Formiminoglutamase catalyses the fourth step in histidine degradation, acting to hydrolyse N-formimidoyl-L-glutamate to L-glutamate and formamide. Proclavaminate amidinohydrolase is involved in clavulanic acid biosynthesis. Clavulanic acid acts as an inhibitor of a wide range of beta-lactamase enzymes that are used by various microorganisms to resist beta-lactam antibiotics. As a result, this enzyme improves the effectiveness of beta-lactamase antibiotics [].; GO: 0016813 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines, 0046872 metal ion binding; PDB: 4DZ4_A 3SL0_A 3MMR_A 3SL1_A 2EF5_D 2EIV_K 2EF4_A 3NIO_F 3THH_A 1WVA_A ....
Probab=30.64 E-value=63 Score=22.83 Aligned_cols=31 Identities=16% Similarity=0.233 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHhCCCcEEEEcCCCCCCCCc
Q psy4717 39 TEDVEKVVQVAHDHNLVIIPFGGGTNVTGAV 69 (90)
Q Consensus 39 ~~~v~~vv~~a~~~~i~v~~~G~G~n~~~~~ 69 (90)
.+.+++.++-+.+.+...+.+||.|+++.+.
T Consensus 66 ~~~l~~~v~~~~~~g~~pi~lGGdhsis~~~ 96 (277)
T PF00491_consen 66 FERLAEAVAEVLEAGAFPIVLGGDHSISYGT 96 (277)
T ss_dssp HHHHHHHHHHHHHTTEEEEEEESSGGGHHHH
T ss_pred HHHHHHHHHHhhcCCCEEEecCCCchhHHHh
Confidence 5666777777777898899999999986543
No 448
>PRK05957 aspartate aminotransferase; Provisional
Probab=30.59 E-value=67 Score=23.70 Aligned_cols=20 Identities=20% Similarity=0.292 Sum_probs=17.4
Q ss_pred CHHHHHHHHHHHHhCCCcEE
Q psy4717 38 STEDVEKVVQVAHDHNLVII 57 (90)
Q Consensus 38 s~~~v~~vv~~a~~~~i~v~ 57 (90)
+.+++++++++|+++++.++
T Consensus 178 ~~~~~~~i~~~a~~~~~~li 197 (389)
T PRK05957 178 PEALLRAVNQICAEHGIYHI 197 (389)
T ss_pred CHHHHHHHHHHHHHcCcEEE
Confidence 46899999999999998875
No 449
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=30.58 E-value=82 Score=23.12 Aligned_cols=29 Identities=17% Similarity=0.358 Sum_probs=24.5
Q ss_pred CHHHHHHHHHHHHhC-CCcEEEEcCCCCCC
Q psy4717 38 STEDVEKVVQVAHDH-NLVIIPFGGGTNVT 66 (90)
Q Consensus 38 s~~~v~~vv~~a~~~-~i~v~~~G~G~n~~ 66 (90)
+.+++.+++++.+++ ++.-+.++||--+.
T Consensus 120 ~~~e~~~~i~~i~~~~~I~~VilSGGDPl~ 149 (321)
T TIGR03822 120 SPAELDAAFAYIADHPEIWEVILTGGDPLV 149 (321)
T ss_pred CHHHHHHHHHHHHhCCCccEEEEeCCCccc
Confidence 568999999998866 78889999998774
No 450
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=30.57 E-value=78 Score=23.83 Aligned_cols=27 Identities=22% Similarity=0.179 Sum_probs=22.7
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEEcCCC
Q psy4717 37 ESTEDVEKVVQVAHDHNLVIIPFGGGT 63 (90)
Q Consensus 37 ~s~~~v~~vv~~a~~~~i~v~~~G~G~ 63 (90)
=+.+|+++++++|+++|..+++..+..
T Consensus 46 fs~~~l~e~i~~ah~~gkk~~V~~N~~ 72 (347)
T COG0826 46 FSVEDLAEAVELAHSAGKKVYVAVNTL 72 (347)
T ss_pred CCHHHHHHHHHHHHHcCCeEEEEeccc
Confidence 467899999999999999888875543
No 451
>PF03460 NIR_SIR_ferr: Nitrite/Sulfite reductase ferredoxin-like half domain; InterPro: IPR005117 Sulphite reductases (SiRs) and related nitrite reductases (NiRs) catalyse the six-electron reduction reactions of sulphite to sulphide, and nitrite to ammonia, respectively. The Escherichia coli SiR enzyme is a complex composed of two proteins, a flavoprotein alpha-component (SiR-FP) and a hemoprotein beta-component (SiR-HP), and has an alpha(8)beta(4) quaternary structure []. SiR-FP contains both FAD and FMN, while SiR-HP contains a Fe(4)S(4) cluster coupled to a sirohaem through a cysteine bridge. Electrons are transferred from NADPH to FAD, and on to FMN in SiR-FP, from which they are transferred to the metal centre of SiR-HP, where they reduce the siroheme-bound sulphite. SiR-HP has a two-fold symmetry, which generates a distinctive three-domain alpha/beta fold that controls assembly and reactivity []. This entry describes the ferrodoxin-like (alpha/beta sandwich) domain, which consists of a duplication containing two subdomains of this fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3B0H_A 4GEP_A 2GEP_A 2AOP_A 5AOP_A 6GEP_A 4AOP_A 1AOP_A 3AOP_A 8GEP_A ....
Probab=30.53 E-value=71 Score=17.55 Aligned_cols=33 Identities=15% Similarity=0.075 Sum_probs=24.9
Q ss_pred ccEEEEcCCHHHHHHHHHHHHhCCCcEEEEcCCCCC
Q psy4717 30 TRYWCITESTEDVEKVVQVAHDHNLVIIPFGGGTNV 65 (90)
Q Consensus 30 p~~vv~P~s~~~v~~vv~~a~~~~i~v~~~G~G~n~ 65 (90)
|...+ +.+++..+.+++.+++...+=++..-|+
T Consensus 17 ~~G~i---~~~~l~~la~ia~~yg~~~irlT~~Q~l 49 (69)
T PF03460_consen 17 PGGRI---SAEQLRALAEIAEKYGDGEIRLTTRQNL 49 (69)
T ss_dssp GGGEE---EHHHHHHHHHHHHHHSTSEEEEETTSCE
T ss_pred CCEEE---CHHHHHHHHHHHHHhCCCeEEECCCCeE
Confidence 44555 5589999999999999877777666655
No 452
>PLN00143 tyrosine/nicotianamine aminotransferase; Provisional
Probab=30.49 E-value=68 Score=23.93 Aligned_cols=20 Identities=25% Similarity=0.481 Sum_probs=16.9
Q ss_pred CHHHHHHHHHHHHhCCCcEE
Q psy4717 38 STEDVEKVVQVAHDHNLVII 57 (90)
Q Consensus 38 s~~~v~~vv~~a~~~~i~v~ 57 (90)
+.+++++++++|+++++.++
T Consensus 188 s~~~~~~l~~~a~~~~~~ii 207 (409)
T PLN00143 188 SYEHLNKIAETARKLGILVI 207 (409)
T ss_pred CHHHHHHHHHHHHHcCCeEE
Confidence 35899999999999987654
No 453
>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.
Probab=30.46 E-value=61 Score=23.66 Aligned_cols=20 Identities=15% Similarity=0.343 Sum_probs=17.1
Q ss_pred CHHHHHHHHHHHHhCCCcEE
Q psy4717 38 STEDVEKVVQVAHDHNLVII 57 (90)
Q Consensus 38 s~~~v~~vv~~a~~~~i~v~ 57 (90)
+.+++.+++++|+++++.++
T Consensus 182 ~~~~~~~i~~~a~~~~~~ii 201 (383)
T TIGR03540 182 PLKFFKELVEFAKEYNIIVC 201 (383)
T ss_pred CHHHHHHHHHHHHHcCEEEE
Confidence 46999999999999987654
No 454
>cd02193 PurL Formylglycinamide ribonucleotide amidotransferase (FGAR-AT) catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, phosphate, and glutamate in the fourth step of the purine biosynthetic pathway. In eukaryotes and Gram-negative bacteria, FGAR-AT is encoded by the purL gene as a multidomain protein with a molecular mass of about 140 kDa. In Gram-positive bacteria and archaea FGAR-AT is a complex of three proteins: PurS, PurL, and PurQ. PurL itself contains two tandem N- and C-terminal domains (four domains altogether). The N-terminal domains bind ATP and are related to the ATP-binding domains of HypE, ThiL, SelD and PurM.
Probab=30.38 E-value=77 Score=22.49 Aligned_cols=31 Identities=16% Similarity=0.080 Sum_probs=23.7
Q ss_pred cEEEEcCCHHHHHHHHHHHHhCCCcEEEEcC
Q psy4717 31 RYWCITESTEDVEKVVQVAHDHNLVIIPFGG 61 (90)
Q Consensus 31 ~~vv~P~s~~~v~~vv~~a~~~~i~v~~~G~ 61 (90)
..++.--..++..++++.++++++++.++|.
T Consensus 241 ~~~l~~v~~~~~~~~~~~~~~~gi~~~~IG~ 271 (272)
T cd02193 241 ERGVIQVRAEDRDAVEEAQYGLADCVHVLGQ 271 (272)
T ss_pred cCeEEEECHHHHHHHHHHHhccCCCeEEecc
Confidence 3345555557788899999999999999884
No 455
>PRK13601 putative L7Ae-like ribosomal protein; Provisional
Probab=30.38 E-value=1.1e+02 Score=18.19 Aligned_cols=33 Identities=9% Similarity=0.177 Sum_probs=24.6
Q ss_pred CccEEEEcCCH--HHHHHHHHHHHhCCCcEEEEcC
Q psy4717 29 GTRYWCITEST--EDVEKVVQVAHDHNLVIIPFGG 61 (90)
Q Consensus 29 ~p~~vv~P~s~--~~v~~vv~~a~~~~i~v~~~G~ 61 (90)
.+..|+...+. +-...+..+|+.+++|+...+.
T Consensus 24 kakLViiA~Da~~~~~k~i~~~c~~~~Vpv~~~~t 58 (82)
T PRK13601 24 NVLQVYIAKDAEEHVTKKIKELCEEKSIKIVYIDT 58 (82)
T ss_pred CeeEEEEeCCCCHHHHHHHHHHHHhCCCCEEEeCC
Confidence 35666666655 4567888999999999976665
No 456
>PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional
Probab=30.35 E-value=66 Score=24.04 Aligned_cols=22 Identities=14% Similarity=0.241 Sum_probs=19.0
Q ss_pred CCHHHHHHHHHHHHhCCCcEEE
Q psy4717 37 ESTEDVEKVVQVAHDHNLVIIP 58 (90)
Q Consensus 37 ~s~~~v~~vv~~a~~~~i~v~~ 58 (90)
-+.+.++++.++|+++++.++.
T Consensus 201 ~~~~~l~~l~~l~~~~~~llI~ 222 (406)
T PRK12381 201 ADKAFLQGLRELCDRHNALLIF 222 (406)
T ss_pred CCHHHHHHHHHHHHHcCCEEEE
Confidence 3689999999999999987764
No 457
>PRK07050 cystathionine beta-lyase; Provisional
Probab=30.32 E-value=1e+02 Score=23.20 Aligned_cols=21 Identities=19% Similarity=0.237 Sum_probs=18.6
Q ss_pred CHHHHHHHHHHHHhCCCcEEE
Q psy4717 38 STEDVEKVVQVAHDHNLVIIP 58 (90)
Q Consensus 38 s~~~v~~vv~~a~~~~i~v~~ 58 (90)
+..++.++.++|+++++.++.
T Consensus 165 ~~~di~~I~~ia~~~gi~liv 185 (394)
T PRK07050 165 EVPDVPAITAAARARGVVTAI 185 (394)
T ss_pred cHhhHHHHHHHHHHcCCEEEE
Confidence 778999999999999987765
No 458
>PRK15395 methyl-galactoside ABC transporter galactose-binding periplasmic protein MglB; Provisional
Probab=30.26 E-value=1.3e+02 Score=21.63 Aligned_cols=35 Identities=14% Similarity=0.275 Sum_probs=26.1
Q ss_pred CccEEEE-cCCHHHHHHHHHHHHhCCCcEEEEcCCC
Q psy4717 29 GTRYWCI-TESTEDVEKVVQVAHDHNLVIIPFGGGT 63 (90)
Q Consensus 29 ~p~~vv~-P~s~~~v~~vv~~a~~~~i~v~~~G~G~ 63 (90)
+++.++. |.+.+.....++.+.+.++|++.++...
T Consensus 81 ~vdgiIi~~~~~~~~~~~l~~l~~~giPvV~vd~~~ 116 (330)
T PRK15395 81 GVKALAINLVDPAAAPTVIEKARGQDVPVVFFNKEP 116 (330)
T ss_pred CCCEEEEeccCHHHHHHHHHHHHHCCCcEEEEcCCc
Confidence 3665554 5565656778888999999999998743
No 459
>PRK07550 hypothetical protein; Provisional
Probab=30.17 E-value=66 Score=23.55 Aligned_cols=23 Identities=17% Similarity=0.264 Sum_probs=18.5
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEc
Q psy4717 38 STEDVEKVVQVAHDHNLVIIPFG 60 (90)
Q Consensus 38 s~~~v~~vv~~a~~~~i~v~~~G 60 (90)
+.+++++++++|+++++.++.=.
T Consensus 181 ~~~~~~~i~~~~~~~~~~iI~Dd 203 (386)
T PRK07550 181 PPELLHELYDLARRHGIALILDE 203 (386)
T ss_pred CHHHHHHHHHHHHHcCeEEEEec
Confidence 36789999999999998776533
No 460
>PRK07568 aspartate aminotransferase; Provisional
Probab=30.11 E-value=68 Score=23.45 Aligned_cols=20 Identities=30% Similarity=0.687 Sum_probs=16.9
Q ss_pred CHHHHHHHHHHHHhCCCcEE
Q psy4717 38 STEDVEKVVQVAHDHNLVII 57 (90)
Q Consensus 38 s~~~v~~vv~~a~~~~i~v~ 57 (90)
+.+++.+++++|+++++.++
T Consensus 180 ~~~~~~~i~~~~~~~~~~ii 199 (397)
T PRK07568 180 TKEELEMLAEIAKKHDLFLI 199 (397)
T ss_pred CHHHHHHHHHHHHHCCcEEE
Confidence 45789999999999998765
No 461
>PRK06348 aspartate aminotransferase; Provisional
Probab=30.02 E-value=68 Score=23.57 Aligned_cols=20 Identities=35% Similarity=0.589 Sum_probs=17.1
Q ss_pred CHHHHHHHHHHHHhCCCcEE
Q psy4717 38 STEDVEKVVQVAHDHNLVII 57 (90)
Q Consensus 38 s~~~v~~vv~~a~~~~i~v~ 57 (90)
|.+++.+++++|+++++.++
T Consensus 180 s~~~~~~l~~~a~~~~~~ii 199 (384)
T PRK06348 180 SKETLEEIAKIAIEYDLFII 199 (384)
T ss_pred CHHHHHHHHHHHHHCCeEEE
Confidence 46899999999999998654
No 462
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=29.99 E-value=67 Score=20.58 Aligned_cols=26 Identities=12% Similarity=0.192 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHhCCCcEEEEcCCCC
Q psy4717 39 TEDVEKVVQVAHDHNLVIIPFGGGTN 64 (90)
Q Consensus 39 ~~~v~~vv~~a~~~~i~v~~~G~G~n 64 (90)
...+.++|+.+++.++++.+.+++.+
T Consensus 89 ~pg~~~~L~~L~~~g~~~~i~s~~~~ 114 (185)
T TIGR01990 89 LPGIKNLLDDLKKNNIKIALASASKN 114 (185)
T ss_pred CccHHHHHHHHHHCCCeEEEEeCCcc
Confidence 36788889999999999999887655
No 463
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=29.95 E-value=77 Score=22.52 Aligned_cols=21 Identities=14% Similarity=0.385 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHhCCCcEEEE
Q psy4717 39 TEDVEKVVQVAHDHNLVIIPF 59 (90)
Q Consensus 39 ~~~v~~vv~~a~~~~i~v~~~ 59 (90)
.+++.++.+.|+++++|+++.
T Consensus 125 ~~~~~~v~~~~~~~g~pl~vi 145 (267)
T PRK07226 125 LEDLGEVAEECEEWGMPLLAM 145 (267)
T ss_pred HHHHHHHHHHHHHcCCcEEEE
Confidence 468889999999999999885
No 464
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=29.94 E-value=57 Score=24.90 Aligned_cols=30 Identities=23% Similarity=0.268 Sum_probs=23.4
Q ss_pred eecCccEEEEcCCHHHHHHHHHHHHhCCCcEEE
Q psy4717 26 IFIGTRYWCITESTEDVEKVVQVAHDHNLVIIP 58 (90)
Q Consensus 26 ~~~~p~~vv~P~s~~~v~~vv~~a~~~~i~v~~ 58 (90)
+|+.|--+-.. +.++++++.|+++|+|+.+
T Consensus 99 ~RINPGNig~~---~~v~~vVe~Ak~~g~piRI 128 (361)
T COG0821 99 VRINPGNIGFK---DRVREVVEAAKDKGIPIRI 128 (361)
T ss_pred EEECCcccCcH---HHHHHHHHHHHHcCCCEEE
Confidence 45555555443 5899999999999999998
No 465
>TIGR03638 cas1_ECOLI CRISPR-associated endonuclease Cas1, ECOLI subtype. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.
Probab=29.90 E-value=72 Score=22.92 Aligned_cols=28 Identities=18% Similarity=0.255 Sum_probs=22.3
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEEcCCCC
Q psy4717 37 ESTEDVEKVVQVAHDHNLVIIPFGGGTN 64 (90)
Q Consensus 37 ~s~~~v~~vv~~a~~~~i~v~~~G~G~n 64 (90)
..+.==.++++.|.++|+++..++.+.+
T Consensus 52 g~~siT~~al~~l~~~gI~v~~~~~~G~ 79 (269)
T TIGR03638 52 PGTSVTHAAVKLLARHGCLVVWVGEGGV 79 (269)
T ss_pred CCCccCHHHHHHHHHCCCEEEEECCCCc
Confidence 3444447899999999999999997664
No 466
>PRK13805 bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional
Probab=29.86 E-value=77 Score=26.54 Aligned_cols=29 Identities=24% Similarity=0.408 Sum_probs=23.8
Q ss_pred CCHHHHHHHHHHHHhCCCc-EEEEcCCCCC
Q psy4717 37 ESTEDVEKVVQVAHDHNLV-IIPFGGGTNV 65 (90)
Q Consensus 37 ~s~~~v~~vv~~a~~~~i~-v~~~G~G~n~ 65 (90)
.+.+.|.++++.+++.++. ++.+|||+.+
T Consensus 523 p~~~~v~~~~~~~~~~~~D~IIaiGGGSvi 552 (862)
T PRK13805 523 PTLSTVRKGAELMRSFKPDTIIALGGGSPM 552 (862)
T ss_pred cCHHHHHHHHHHHHhcCCCEEEEeCCchHH
Confidence 3568899999999999985 5669999865
No 467
>PRK07337 aminotransferase; Validated
Probab=29.80 E-value=73 Score=23.36 Aligned_cols=21 Identities=10% Similarity=0.295 Sum_probs=17.4
Q ss_pred CHHHHHHHHHHHHhCCCcEEE
Q psy4717 38 STEDVEKVVQVAHDHNLVIIP 58 (90)
Q Consensus 38 s~~~v~~vv~~a~~~~i~v~~ 58 (90)
+.+++.+++++|+++++.++.
T Consensus 181 ~~~~~~~i~~~a~~~~~~ii~ 201 (388)
T PRK07337 181 APDELRRIVEAVRARGGFTIV 201 (388)
T ss_pred CHHHHHHHHHHHHHCCCEEEE
Confidence 368999999999999886653
No 468
>PRK08068 transaminase; Reviewed
Probab=29.74 E-value=67 Score=23.59 Aligned_cols=20 Identities=25% Similarity=0.406 Sum_probs=16.7
Q ss_pred CHHHHHHHHHHHHhCCCcEE
Q psy4717 38 STEDVEKVVQVAHDHNLVII 57 (90)
Q Consensus 38 s~~~v~~vv~~a~~~~i~v~ 57 (90)
+.+++++++++|+++++.++
T Consensus 185 s~~~~~~l~~la~~~~~~ii 204 (389)
T PRK08068 185 TKAFFEETVAFAKKHNIGVV 204 (389)
T ss_pred CHHHHHHHHHHHHHcCeEEE
Confidence 34899999999999988655
No 469
>PF13361 UvrD_C: UvrD-like helicase C-terminal domain; PDB: 1UAA_B 3U4Q_A 3U44_A 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A ....
Probab=29.72 E-value=90 Score=21.75 Aligned_cols=33 Identities=3% Similarity=0.113 Sum_probs=25.5
Q ss_pred ccEEEEcCCHHHHHHHHHHHHhCCCcEEEEcCC
Q psy4717 30 TRYWCITESTEDVEKVVQVAHDHNLVIIPFGGG 62 (90)
Q Consensus 30 p~~vv~P~s~~~v~~vv~~a~~~~i~v~~~G~G 62 (90)
-+..|..++-.++..+.+++.++|+|+...+..
T Consensus 78 ~diAVL~R~~~~~~~i~~~L~~~gIp~~~~~~~ 110 (351)
T PF13361_consen 78 SDIAVLVRTNSQIKEIEDALKEAGIPYRISGSK 110 (351)
T ss_dssp GGEEEEESSGGHHHHHHHHHHHTTS-EEESSSS
T ss_pred ccEEEEEECchhHHHHHHHHhhhcceeEecccc
Confidence 356667777999999999999999998665543
No 470
>TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase. This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella.
Probab=29.71 E-value=68 Score=23.08 Aligned_cols=24 Identities=4% Similarity=-0.069 Sum_probs=19.8
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEcC
Q psy4717 38 STEDVEKVVQVAHDHNLVIIPFGG 61 (90)
Q Consensus 38 s~~~v~~vv~~a~~~~i~v~~~G~ 61 (90)
+.+++.+++++|+++++.++.=..
T Consensus 143 ~~~~~~~l~~~a~~~~~~ii~De~ 166 (330)
T TIGR01140 143 PPETLLALAARLRARGGWLVVDEA 166 (330)
T ss_pred CHHHHHHHHHHhHhcCCEEEEECc
Confidence 568999999999999997776443
No 471
>PLN02187 rooty/superroot1
Probab=29.70 E-value=70 Score=24.54 Aligned_cols=20 Identities=25% Similarity=0.499 Sum_probs=17.0
Q ss_pred CHHHHHHHHHHHHhCCCcEE
Q psy4717 38 STEDVEKVVQVAHDHNLVII 57 (90)
Q Consensus 38 s~~~v~~vv~~a~~~~i~v~ 57 (90)
+.+++++++++|+++++.++
T Consensus 222 s~e~l~~i~~~a~~~~i~iI 241 (462)
T PLN02187 222 SHDHLKKVAETARKLGIMVI 241 (462)
T ss_pred CHHHHHHHHHHHHHCCCEEE
Confidence 46899999999999997654
No 472
>PTZ00433 tyrosine aminotransferase; Provisional
Probab=29.68 E-value=70 Score=23.81 Aligned_cols=20 Identities=25% Similarity=0.527 Sum_probs=17.3
Q ss_pred CHHHHHHHHHHHHhCCCcEE
Q psy4717 38 STEDVEKVVQVAHDHNLVII 57 (90)
Q Consensus 38 s~~~v~~vv~~a~~~~i~v~ 57 (90)
+.+++.+++++|+++++.++
T Consensus 195 s~~~~~~l~~~a~~~~~~ii 214 (412)
T PTZ00433 195 SRKHVEDIIRLCEELRLPLI 214 (412)
T ss_pred CHHHHHHHHHHHHHcCCeEE
Confidence 47899999999999998765
No 473
>cd00396 PurM-like AIR (aminoimidazole ribonucleotide) synthase related protein. This family includes Hydrogen expression/formation protein HypE, AIR synthases, FGAM (formylglycinamidine ribonucleotide) synthase and Selenophosphate synthetase (SelD). The N-terminal domain of AIR synthase forms the dimer interface of the protein, and is suggested as a putative ATP binding domain.
Probab=29.63 E-value=1.1e+02 Score=20.78 Aligned_cols=29 Identities=14% Similarity=0.202 Sum_probs=22.2
Q ss_pred EEEEcCCHHHHHHHHHHHHhCCCcEEEEc
Q psy4717 32 YWCITESTEDVEKVVQVAHDHNLVIIPFG 60 (90)
Q Consensus 32 ~vv~P~s~~~v~~vv~~a~~~~i~v~~~G 60 (90)
.++.--..+++.++.+.+++++++..++|
T Consensus 193 ~ll~~v~~~~~~~~~~~~~~~g~~~~~IG 221 (222)
T cd00396 193 GLLIAVPAEEADAVLLLLNGNGIDAAVIG 221 (222)
T ss_pred cEEEEECHHHHHHHHHHHHHcCCCEEEeC
Confidence 34444456778888888999999999887
No 474
>cd06319 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=29.62 E-value=1e+02 Score=20.78 Aligned_cols=34 Identities=9% Similarity=0.122 Sum_probs=25.2
Q ss_pred CccEEE-EcCCHHHHHHHHHHHHhCCCcEEEEcCC
Q psy4717 29 GTRYWC-ITESTEDVEKVVQVAHDHNLVIIPFGGG 62 (90)
Q Consensus 29 ~p~~vv-~P~s~~~v~~vv~~a~~~~i~v~~~G~G 62 (90)
+++.++ .|.+.+.....++.+.+.++|++.++..
T Consensus 55 ~~dgiii~~~~~~~~~~~l~~~~~~~ipvV~~~~~ 89 (277)
T cd06319 55 GVSGIIISPTNSSAAVTLLKLAAQAKIPVVIADIG 89 (277)
T ss_pred CCCEEEEcCCchhhhHHHHHHHHHCCCCEEEEecC
Confidence 477665 4655555667889999999999998653
No 475
>PRK09440 avtA valine--pyruvate transaminase; Provisional
Probab=29.55 E-value=73 Score=23.60 Aligned_cols=20 Identities=30% Similarity=0.620 Sum_probs=17.2
Q ss_pred CHHHHHHHHHHHHhCCCcEE
Q psy4717 38 STEDVEKVVQVAHDHNLVII 57 (90)
Q Consensus 38 s~~~v~~vv~~a~~~~i~v~ 57 (90)
+.+++.+++++|+++++.++
T Consensus 197 s~~~~~~l~~~a~~~~~~iI 216 (416)
T PRK09440 197 TDEELEKLDALARQHNIPLL 216 (416)
T ss_pred CHHHHHHHHHHHHHcCCcEE
Confidence 46899999999999998665
No 476
>KOG4058|consensus
Probab=29.55 E-value=74 Score=21.90 Aligned_cols=31 Identities=23% Similarity=0.443 Sum_probs=23.7
Q ss_pred EEcCCHHHHHHHHHHHHhCC-CcEEEEcCCCC
Q psy4717 34 CITESTEDVEKVVQVAHDHN-LVIIPFGGGTN 64 (90)
Q Consensus 34 v~P~s~~~v~~vv~~a~~~~-i~v~~~G~G~n 64 (90)
..|.|++||+.++.++..+. -.++=+|+|-+
T Consensus 53 YVpAtteQv~nVLSll~~n~~GklvDlGSGDG 84 (199)
T KOG4058|consen 53 YVPATTEQVENVLSLLRGNPKGKLVDLGSGDG 84 (199)
T ss_pred ccCccHHHHHHHHHHccCCCCCcEEeccCCCc
Confidence 46899999999999998865 35666666554
No 477
>cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase.
Probab=29.53 E-value=77 Score=21.69 Aligned_cols=25 Identities=8% Similarity=0.251 Sum_probs=21.9
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEEcC
Q psy4717 37 ESTEDVEKVVQVAHDHNLVIIPFGG 61 (90)
Q Consensus 37 ~s~~~v~~vv~~a~~~~i~v~~~G~ 61 (90)
....+..++.++|.++++++++-+.
T Consensus 180 GGi~~~~~i~~~a~~~gi~~~~~~~ 204 (229)
T cd00308 180 GGLTESRRAADLAEAFGIRVMVHGT 204 (229)
T ss_pred CCHHHHHHHHHHHHHcCCEEeecCC
Confidence 5678999999999999999999653
No 478
>PRK06207 aspartate aminotransferase; Provisional
Probab=29.49 E-value=73 Score=23.75 Aligned_cols=20 Identities=20% Similarity=0.423 Sum_probs=16.9
Q ss_pred CHHHHHHHHHHHHhCCCcEE
Q psy4717 38 STEDVEKVVQVAHDHNLVII 57 (90)
Q Consensus 38 s~~~v~~vv~~a~~~~i~v~ 57 (90)
+.+++.+++++|+++++.++
T Consensus 196 s~e~l~~l~~~a~~~~~~iI 215 (405)
T PRK06207 196 SAEEIAQIAALARRYGATVI 215 (405)
T ss_pred CHHHHHHHHHHHHHcCCEEE
Confidence 45899999999999988654
No 479
>PLN02428 lipoic acid synthase
Probab=29.48 E-value=85 Score=23.75 Aligned_cols=26 Identities=19% Similarity=0.388 Sum_probs=23.9
Q ss_pred cCCHHHHHHHHHHHHhCCCcEEEEcC
Q psy4717 36 TESTEDVEKVVQVAHDHNLVIIPFGG 61 (90)
Q Consensus 36 P~s~~~v~~vv~~a~~~~i~v~~~G~ 61 (90)
-++.+|+.++++.+++.++.++++|.
T Consensus 258 GET~Edv~e~l~~Lrelgvd~vtigq 283 (349)
T PLN02428 258 GETDEEVVQTMEDLRAAGVDVVTFGQ 283 (349)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEeecc
Confidence 68999999999999999999998865
No 480
>PRK09505 malS alpha-amylase; Reviewed
Probab=29.48 E-value=72 Score=26.29 Aligned_cols=22 Identities=23% Similarity=0.394 Sum_probs=20.1
Q ss_pred CCHHHHHHHHHHHHhCCCcEEE
Q psy4717 37 ESTEDVEKVVQVAHDHNLVIIP 58 (90)
Q Consensus 37 ~s~~~v~~vv~~a~~~~i~v~~ 58 (90)
.+.+|++++++.|+++||.|+.
T Consensus 289 Gt~~dfk~Lv~~aH~~Gi~Vil 310 (683)
T PRK09505 289 GTEADLRTLVDEAHQRGIRILF 310 (683)
T ss_pred CCHHHHHHHHHHHHHCCCEEEE
Confidence 5899999999999999999765
No 481
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=29.42 E-value=82 Score=20.97 Aligned_cols=25 Identities=20% Similarity=0.425 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHhCCCcEEEEcCCCC
Q psy4717 40 EDVEKVVQVAHDHNLVIIPFGGGTN 64 (90)
Q Consensus 40 ~~v~~vv~~a~~~~i~v~~~G~G~n 64 (90)
+.+.++++.++++|+++.+.++|..
T Consensus 88 ~g~~~~l~~l~~~g~~~~IvS~~~~ 112 (219)
T TIGR00338 88 EGAEELVKTLKEKGYKVAVISGGFD 112 (219)
T ss_pred CCHHHHHHHHHHCCCEEEEECCCcH
Confidence 4667788889999999999999874
No 482
>PF05378 Hydant_A_N: Hydantoinase/oxoprolinase N-terminal region; InterPro: IPR008040 This domain is found at the N terminus of the hydantoinase/oxoprolinase IPR002821 from INTERPRO family.
Probab=29.32 E-value=1.5e+02 Score=19.89 Aligned_cols=36 Identities=6% Similarity=-0.032 Sum_probs=30.5
Q ss_pred cEEEEcCCHHHHHHHHHHHHhCCCcEEEEcCCCCCC
Q psy4717 31 RYWCITESTEDVEKVVQVAHDHNLVIIPFGGGTNVT 66 (90)
Q Consensus 31 ~~vv~P~s~~~v~~vv~~a~~~~i~v~~~G~G~n~~ 66 (90)
--++.|=+.++|.++++.+.+.|+.-++..+=++..
T Consensus 125 G~~i~~ld~~~v~~~~~~l~~~gv~avAV~~~fS~~ 160 (176)
T PF05378_consen 125 GEVIEPLDEDEVREALRELKDKGVEAVAVSLLFSYR 160 (176)
T ss_pred cEEecCCCHHHHHHHHHHHHhCCCCEEEEECccCCC
Confidence 347889999999999999999999888887776653
No 483
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=29.30 E-value=42 Score=21.90 Aligned_cols=25 Identities=8% Similarity=0.205 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHhCCCcEEEEcCCC
Q psy4717 39 TEDVEKVVQVAHDHNLVIIPFGGGT 63 (90)
Q Consensus 39 ~~~v~~vv~~a~~~~i~v~~~G~G~ 63 (90)
-.++.++++.+++.|+++.+.+|.+
T Consensus 129 ~~~~~~~l~~L~~~Gi~~~i~TGD~ 153 (215)
T PF00702_consen 129 RPGAKEALQELKEAGIKVAILTGDN 153 (215)
T ss_dssp HTTHHHHHHHHHHTTEEEEEEESSE
T ss_pred hhhhhhhhhhhhccCcceeeeeccc
Confidence 4679999999999999999998764
No 484
>cd00344 FBP_aldolase_I Fructose-bisphosphate aldolase class I. Fructose-1,6-bisphosphate aldolase is an enzyme of the glycolytic and gluconeogenic pathways found in vertebrates, plants, and bacteria. The enzyme catalyzes the cleavage of fructose 1,6-bisphosphate to glyceraldehyde 3-phosphate and dihydroxyacetone phosphate (DHAP). Mutations in the aldolase genes in humans cause hemolytic anemia and hereditary fructose intolerance. The enzyme is a member of the class I aldolase family, which utilizes covalent catalysis through a Schiff base formed between a lysine residue of the enzyme and ketose substrates. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=29.29 E-value=37 Score=25.59 Aligned_cols=54 Identities=9% Similarity=0.191 Sum_probs=29.5
Q ss_pred CCcchhHHHHHHHHhccC-----ccccceeeecCcc---EEEEcCCHHHHHHHHHHHHhCCC
Q psy4717 1 MKSTEDVEKVVQVAHDHN-----LVVNHQAIFIGTR---YWCITESTEDVEKVVQVAHDHNL 54 (90)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~p~---~vv~P~s~~~v~~vv~~a~~~~i 54 (90)
|+.|.++|.|..++-.+. +.++.+.+.+... ....-.++.++.+.-+.|.++|+
T Consensus 110 ek~t~GLD~L~~R~~~y~~~GarfaKwRsVi~i~~~~Ps~~~I~~na~~laryA~~cq~~GL 171 (328)
T cd00344 110 ETTTQGLDGLSERCAQYKKDGADFAKWRCVLKIGEHTPSALAIMENANVLARYASICQQNGI 171 (328)
T ss_pred CccCCChHHHHHHHHHHhhcCCceeeeeeeeecCCCCCcHHHHHHHHHHHHHHHHHHHHCCC
Confidence 567888887776664443 3345555554422 11111223455666667788875
No 485
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=29.27 E-value=84 Score=24.79 Aligned_cols=31 Identities=19% Similarity=0.314 Sum_probs=24.7
Q ss_pred ccEEEEcCCHHHHH----HHHHHHHhCCCcEEEEc
Q psy4717 30 TRYWCITESTEDVE----KVVQVAHDHNLVIIPFG 60 (90)
Q Consensus 30 p~~vv~P~s~~~v~----~vv~~a~~~~i~v~~~G 60 (90)
++.=-.|.|+.||+ +++++|++.+++++..|
T Consensus 183 ~~~~SapGsVsQVRe~t~~L~~~AK~~~i~~fiVG 217 (456)
T COG1066 183 EEITSAPGSVSQVREVAAELMRLAKTKNIAIFIVG 217 (456)
T ss_pred ccccCCCCcHHHHHHHHHHHHHHHHHcCCeEEEEE
Confidence 55555688998885 57899999999988875
No 486
>PRK09276 LL-diaminopimelate aminotransferase; Provisional
Probab=29.24 E-value=74 Score=23.25 Aligned_cols=20 Identities=25% Similarity=0.375 Sum_probs=17.1
Q ss_pred CHHHHHHHHHHHHhCCCcEE
Q psy4717 38 STEDVEKVVQVAHDHNLVII 57 (90)
Q Consensus 38 s~~~v~~vv~~a~~~~i~v~ 57 (90)
+.+++.+++++|+++++.++
T Consensus 184 ~~~~~~~l~~~~~~~~~~ii 203 (385)
T PRK09276 184 DLEFFEEVVDFAKKYDIIVC 203 (385)
T ss_pred CHHHHHHHHHHHHHCCcEEE
Confidence 36899999999999988664
No 487
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=29.21 E-value=1.2e+02 Score=18.37 Aligned_cols=33 Identities=12% Similarity=0.053 Sum_probs=27.1
Q ss_pred CccEEEEcCCHHHHHHHHHHHHhCCCcEEEEcC
Q psy4717 29 GTRYWCITESTEDVEKVVQVAHDHNLVIIPFGG 61 (90)
Q Consensus 29 ~p~~vv~P~s~~~v~~vv~~a~~~~i~v~~~G~ 61 (90)
.++.||-..+.+.+.+.+..+-++|+.++..+.
T Consensus 59 ~~dvvVE~t~~~~~~~~~~~~L~~G~~VVt~nk 91 (117)
T PF03447_consen 59 DIDVVVECTSSEAVAEYYEKALERGKHVVTANK 91 (117)
T ss_dssp T-SEEEE-SSCHHHHHHHHHHHHTTCEEEES-H
T ss_pred CCCEEEECCCchHHHHHHHHHHHCCCeEEEECH
Confidence 699999999999999999999999999987543
No 488
>PRK09701 D-allose transporter subunit; Provisional
Probab=29.19 E-value=1.4e+02 Score=21.11 Aligned_cols=35 Identities=9% Similarity=0.055 Sum_probs=23.8
Q ss_pred CccEEEE-cCCHHHHHHHHHHHHhCCCcEEEEcCCC
Q psy4717 29 GTRYWCI-TESTEDVEKVVQVAHDHNLVIIPFGGGT 63 (90)
Q Consensus 29 ~p~~vv~-P~s~~~v~~vv~~a~~~~i~v~~~G~G~ 63 (90)
+++.++. |.........+..+.+.++|++.++...
T Consensus 82 ~vDgiIi~~~~~~~~~~~l~~~~~~giPvV~~~~~~ 117 (311)
T PRK09701 82 NYKGIAFAPLSSVNLVMPVARAWKKGIYLVNLDEKI 117 (311)
T ss_pred CCCEEEEeCCChHHHHHHHHHHHHCCCcEEEeCCCC
Confidence 3666554 5555555555677778999999997653
No 489
>PRK07590 L,L-diaminopimelate aminotransferase; Validated
Probab=29.18 E-value=67 Score=23.87 Aligned_cols=19 Identities=21% Similarity=0.380 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHhCCCcEE
Q psy4717 39 TEDVEKVVQVAHDHNLVII 57 (90)
Q Consensus 39 ~~~v~~vv~~a~~~~i~v~ 57 (90)
.+++.+++++|+++++.++
T Consensus 195 ~~~~~~l~~~a~~~~~~iI 213 (409)
T PRK07590 195 KEQLKAWVDYAKENGSLIL 213 (409)
T ss_pred HHHHHHHHHHHHHcCeEEE
Confidence 6999999999999987654
No 490
>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]
Probab=29.16 E-value=74 Score=25.56 Aligned_cols=36 Identities=6% Similarity=0.091 Sum_probs=30.0
Q ss_pred cEEEEcCCHHHHHHHHHHHHhCCCcEEEEcCCCCCC
Q psy4717 31 RYWCITESTEDVEKVVQVAHDHNLVIIPFGGGTNVT 66 (90)
Q Consensus 31 ~~vv~P~s~~~v~~vv~~a~~~~i~v~~~G~G~n~~ 66 (90)
.-++.|.+.+-.++.+++|...++|++.+=.=+++.
T Consensus 337 ~G~l~~~sa~KaArFI~~cd~~~iPlv~L~d~pGFm 372 (526)
T COG4799 337 GGVLDIDSADKAARFIRLCDAFNIPLVFLVDTPGFM 372 (526)
T ss_pred ccccchHHHHHHHHHHHhhhccCCCeEEEeCCCCCC
Confidence 567889999999999999999999999984444443
No 491
>TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic. This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs.
Probab=29.13 E-value=75 Score=23.44 Aligned_cols=20 Identities=35% Similarity=0.516 Sum_probs=16.8
Q ss_pred CHHHHHHHHHHHHhCCCcEE
Q psy4717 38 STEDVEKVVQVAHDHNLVII 57 (90)
Q Consensus 38 s~~~v~~vv~~a~~~~i~v~ 57 (90)
+.+++.+++++|+++++.++
T Consensus 186 ~~~~~~~l~~~a~~~~~~ii 205 (401)
T TIGR01264 186 SRQHLEEILAVAERQCLPII 205 (401)
T ss_pred CHHHHHHHHHHHHHCCCEEE
Confidence 35799999999999998765
No 492
>PRK06358 threonine-phosphate decarboxylase; Provisional
Probab=29.06 E-value=75 Score=23.12 Aligned_cols=20 Identities=25% Similarity=0.551 Sum_probs=17.2
Q ss_pred CHHHHHHHHHHHHhCCCcEE
Q psy4717 38 STEDVEKVVQVAHDHNLVII 57 (90)
Q Consensus 38 s~~~v~~vv~~a~~~~i~v~ 57 (90)
+.+++.+++++|+++++.++
T Consensus 159 ~~~~~~~l~~~a~~~~~~ii 178 (354)
T PRK06358 159 SKEEMKKILDKCEKRNIYLI 178 (354)
T ss_pred CHHHHHHHHHHHHhcCCEEE
Confidence 46899999999999998765
No 493
>PRK13655 phosphoenolpyruvate carboxylase; Provisional
Probab=28.99 E-value=1e+02 Score=24.54 Aligned_cols=29 Identities=14% Similarity=0.268 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHhCCCcEEEE-cCCCCCCCC
Q psy4717 40 EDVEKVVQVAHDHNLVIIPF-GGGTNVTGA 68 (90)
Q Consensus 40 ~~v~~vv~~a~~~~i~v~~~-G~G~n~~~~ 68 (90)
....++.++|.++|+++.++ |.|....-|
T Consensus 221 ~A~~~L~~~~~~~gv~i~~fhGrGg~~~RG 250 (494)
T PRK13655 221 YALSRLYELEEELGVEIYPILGVGSLPFRG 250 (494)
T ss_pred HHHHHHHHHHHHcCCcEEEeccCCCCCCCC
Confidence 45678889999999998887 445555433
No 494
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=28.97 E-value=1.9e+02 Score=20.90 Aligned_cols=41 Identities=17% Similarity=0.324 Sum_probs=28.9
Q ss_pred cCccEEEEcCCHHHHHHHHHHHHhCCCcEEEEcCCCCCCCCcc
Q psy4717 28 IGTRYWCITESTEDVEKVVQVAHDHNLVIIPFGGGTNVTGAVA 70 (90)
Q Consensus 28 ~~p~~vv~P~s~~~v~~vv~~a~~~~i~v~~~G~G~n~~~~~~ 70 (90)
.++++++.+.-.+++.+ +++.+-.+|++=+|.|....|+-+
T Consensus 173 AGA~~i~lE~v~~~~~~--~i~~~l~iP~igiGaG~~~dgqvl 213 (264)
T PRK00311 173 AGAFALVLECVPAELAK--EITEALSIPTIGIGAGPDCDGQVL 213 (264)
T ss_pred CCCCEEEEcCCCHHHHH--HHHHhCCCCEEEeccCCCCCceee
Confidence 56888888776665433 345667899999999998765443
No 495
>PF01983 CofC: Guanylyl transferase CofC like; InterPro: IPR002835 Coenzyme F 420 is a hydride carrier cofactor functioning in methanogenesis. One step in the biosynthesis of coenzyme F 420 involves the coupling of 2-phospho- l-lactate (LP) to 7,8-didemethyl-8-hydroxy-5-deazaflavin, the F 420 chromophore. This condensation requires an initial activation of 2-phospho- l-lactate through a pyrophosphate linkage to GMP. MJ0887 from Methanocaldococcus jannaschii has domain similarity with other known nucleotidyl transferases and was demonstrated to catalyse the formation of lactyl-2-diphospho-5'-guanosine from LP and GTP, which is the third step in the biosynthesis of coenzyme F 420 []. ; GO: 0016779 nucleotidyltransferase activity; PDB: 2I5E_B.
Probab=28.97 E-value=11 Score=26.50 Aligned_cols=37 Identities=30% Similarity=0.510 Sum_probs=21.2
Q ss_pred ccEEEEcCC-----HHHHHHHHHHHHhCCCcEEE-EcCCCCCC
Q psy4717 30 TRYWCITES-----TEDVEKVVQVAHDHNLVIIP-FGGGTNVT 66 (90)
Q Consensus 30 p~~vv~P~s-----~~~v~~vv~~a~~~~i~v~~-~G~G~n~~ 66 (90)
...++.|.+ .+||..++..+.+..+-+.| +|||||..
T Consensus 89 ~~vlvl~aDLPll~~~dl~~~l~~~~~~~vviap~r~gGTN~L 131 (217)
T PF01983_consen 89 DPVLVLPADLPLLTPEDLDALLAAAGRADVVIAPDRGGGTNAL 131 (217)
T ss_dssp S-EEEE-S--TT--HHHHHHHCT-SS--SEEEEE-GGG-EEEE
T ss_pred CceEEeecCCccCCHHHHHHHHhccCCCCEEEeCCCCCCeEEE
Confidence 345566654 48999999988776665555 56788875
No 496
>cd01298 ATZ_TRZ_like TRZ/ATZ family contains enzymes from the atrazine degradation pathway and related hydrolases. Atrazine, a chlorinated herbizide, can be catabolized by a variety of different bacteria. The first three steps of the atrazine dehalogenation pathway are catalyzed by atrazine chlorohydrolase (AtzA), hydroxyatrazine ethylaminohydrolase (AtzB), and N-isopropylammelide N-isopropylaminohydrolase (AtzC). All three enzymes belong to the superfamily of metal dependent hydrolases. AtzA and AtzB, beside other related enzymes are represented in this CD.
Probab=28.95 E-value=96 Score=22.61 Aligned_cols=27 Identities=19% Similarity=0.111 Sum_probs=23.1
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEEcCCC
Q psy4717 37 ESTEDVEKVVQVAHDHNLVIIPFGGGT 63 (90)
Q Consensus 37 ~s~~~v~~vv~~a~~~~i~v~~~G~G~ 63 (90)
-+.+++.++++.|+++|+++.+-..++
T Consensus 191 ~~~~~l~~~~~~A~~~g~~v~~H~~e~ 217 (411)
T cd01298 191 CSDELLREVAELAREYGVPLHIHLAET 217 (411)
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEecCC
Confidence 367999999999999999999986544
No 497
>PRK10355 xylF D-xylose transporter subunit XylF; Provisional
Probab=28.94 E-value=1.4e+02 Score=21.62 Aligned_cols=33 Identities=12% Similarity=0.301 Sum_probs=23.8
Q ss_pred CccEEEE-cCCHHHHHHHHHHHHhCCCcEEEEcC
Q psy4717 29 GTRYWCI-TESTEDVEKVVQVAHDHNLVIIPFGG 61 (90)
Q Consensus 29 ~p~~vv~-P~s~~~v~~vv~~a~~~~i~v~~~G~ 61 (90)
+++.++. |.+.+...+.++.+.+.++|++.++.
T Consensus 81 ~vDGiIi~~~~~~~~~~~l~~~~~~~iPvV~id~ 114 (330)
T PRK10355 81 GVDVLVIIPYNGQVLSNVIKEAKQEGIKVLAYDR 114 (330)
T ss_pred CCCEEEEeCCChhhHHHHHHHHHHCCCeEEEECC
Confidence 4666554 44445566778889999999999965
No 498
>COG2810 Predicted type IV restriction endonuclease [Defense mechanisms]
Probab=28.83 E-value=76 Score=23.26 Aligned_cols=29 Identities=17% Similarity=0.211 Sum_probs=26.1
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEcCCCCCC
Q psy4717 38 STEDVEKVVQVAHDHNLVIIPFGGGTNVT 66 (90)
Q Consensus 38 s~~~v~~vv~~a~~~~i~v~~~G~G~n~~ 66 (90)
-..++++++++|-..|+.+.....|-.|.
T Consensus 82 ~akd~qq~~~Yav~~Gv~~~iVtnGrvWi 110 (284)
T COG2810 82 PAKDVQQLAKYAVDKGVEVGIVTNGRVWI 110 (284)
T ss_pred chHHHHHHHHHHHhcCcEEEEEeCCeEEE
Confidence 45899999999999999999999998873
No 499
>TIGR03539 DapC_actino succinyldiaminopimelate transaminase. This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=28.78 E-value=74 Score=23.12 Aligned_cols=20 Identities=20% Similarity=0.406 Sum_probs=17.1
Q ss_pred CHHHHHHHHHHHHhCCCcEE
Q psy4717 38 STEDVEKVVQVAHDHNLVII 57 (90)
Q Consensus 38 s~~~v~~vv~~a~~~~i~v~ 57 (90)
+.+++.+++++|+++++.++
T Consensus 160 ~~~~~~~i~~~a~~~~~~ii 179 (357)
T TIGR03539 160 SVDELRAIVAWARERGAVVA 179 (357)
T ss_pred CHHHHHHHHHHHHHcCeEEE
Confidence 35899999999999998766
No 500
>PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed
Probab=28.70 E-value=78 Score=22.99 Aligned_cols=19 Identities=26% Similarity=0.417 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHhCCCcEE
Q psy4717 39 TEDVEKVVQVAHDHNLVII 57 (90)
Q Consensus 39 ~~~v~~vv~~a~~~~i~v~ 57 (90)
.+++.+++++|+++++.++
T Consensus 167 ~~~~~~i~~~a~~~~~~ii 185 (364)
T PRK07865 167 VDHLRKVVAWARERGAVVA 185 (364)
T ss_pred HHHHHHHHHHHHHcCCEEE
Confidence 4899999999999997655
Done!