RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy4717
(90 letters)
>gnl|CDD|223354 COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy
production and conversion].
Length = 459
Score = 50.7 bits (121), Expect = 7e-09
Identities = 15/51 (29%), Positives = 34/51 (66%), Gaps = 5/51 (9%)
Query: 37 ESTEDVEKVVQVAHDHNLVIIPFGGGTNVTGAVACPENELRTIISLDTSQM 87
+S E+V ++++A+++ + ++P GGGT+++G A P+ + LD S++
Sbjct: 39 KSEEEVAAILRLANENGIPVVPRGGGTSLSGG-AVPDGG----VVLDLSRL 84
>gnl|CDD|216574 pfam01565, FAD_binding_4, FAD binding domain. This family
consists of various enzymes that use FAD as a
co-factor, most of the enzymes are similar to oxygen
oxidoreductase. One of the enzymes Vanillyl-alcohol
oxidase (VAO) has a solved structure, the alignment
includes the FAD binding site, called the PP-loop,
between residues 99-110. The FAD molecule is covalently
bound in the known structure, however the residue that
links to the FAD is not in the alignment. VAO catalyzes
the oxidation of a wide variety of substrates, ranging
form aromatic amines to 4-alkylphenols. Other members
of this family include D-lactate dehydrogenase, this
enzyme catalyzes the conversion of D-lactate to
pyruvate using FAD as a co-factor; mitomycin radical
oxidase, this enzyme oxidises the reduced form of
mitomycins and is involved in mitomycin resistance.
This family includes MurB an
UDP-N-acetylenolpyruvoylglucosamine reductase enzyme
EC:1.1.1.158. This enzyme is involved in the
biosynthesis of peptidoglycan.
Length = 139
Score = 46.0 bits (110), Expect = 9e-08
Identities = 15/59 (25%), Positives = 29/59 (49%), Gaps = 8/59 (13%)
Query: 37 ESTEDVEKVVQVAHDHNLVIIPFGGGTNVTGAVACPENE-------LRTIISLDTSQMQ 88
ES E+V +V++A+++ L ++ GGG+++ G A L I+ +D
Sbjct: 8 ESEEEVAAIVRLANENGLPVLVRGGGSSLLGD-AVLTGGVVLDLSRLNGILEIDPEDGT 65
>gnl|CDD|129482 TIGR00387, glcD, glycolate oxidase, subunit GlcD. This protein,
the glycolate oxidase GlcD subunit, is similar in
sequence to that of several D-lactate dehydrogenases,
including that of E. coli. The glycolate oxidase has
been found to have some D-lactate dehydrogenase
activity [Energy metabolism, Other].
Length = 413
Score = 37.1 bits (86), Expect = 4e-04
Identities = 14/37 (37%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Query: 37 ESTEDVEKVVQVAHDHNLVIIPFGGGTNVTGAVACPE 73
++TE V +++++ H+H + I+P G GT ++G A PE
Sbjct: 5 KNTEQVARILKLCHEHRIPIVPRGAGTGLSGG-ALPE 40
>gnl|CDD|178402 PLN02805, PLN02805, D-lactate dehydrogenase [cytochrome].
Length = 555
Score = 34.6 bits (79), Expect = 0.003
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Query: 38 STEDVEKVVQVAHDHNLVIIPFGGGTNVTGAVACPENELRTIISLDTSQMQS 89
S E+V K+V+ + + + I+P+GG T++ G P + +D S M+S
Sbjct: 142 SEEEVSKIVKSCNKYKVPIVPYGGATSIEGHTLAPHGG----VCIDMSLMKS 189
>gnl|CDD|173112 PRK14649, PRK14649, UDP-N-acetylenolpyruvoylglucosamine
reductase; Provisional.
Length = 295
Score = 32.1 bits (73), Expect = 0.021
Identities = 10/52 (19%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
Query: 16 DHNLVVNHQAIFIG--TRYWCITESTEDVEKVVQVAHDHNLVIIPFGGGTNV 65
++ + + + IG RY+ + ++ A L + GGG+N+
Sbjct: 5 ENEPLAPYTSWRIGGPARYFVEPTTPDEAIAAAAWAEQRQLPLFWLGGGSNL 56
>gnl|CDD|200472 cd11333, AmyAc_SI_OligoGlu_DGase, Alpha amylase catalytic domain
found in Sucrose isomerases, oligo-1,6-glucosidase
(also called isomaltase; sucrase-isomaltase;
alpha-limit dextrinase), dextran glucosidase (also
called glucan 1,6-alpha-glucosidase), and related
proteins. The sucrose isomerases (SIs) Isomaltulose
synthase (EC 5.4.99.11) and Trehalose synthase (EC
5.4.99.16) catalyze the isomerization of sucrose and
maltose to produce isomaltulose and trehalulose,
respectively. Oligo-1,6-glucosidase (EC 3.2.1.10)
hydrolyzes the alpha-1,6-glucosidic linkage of
isomaltooligosaccharides, pannose, and dextran. Unlike
alpha-1,4-glucosidases (EC 3.2.1.20), it fails to
hydrolyze the alpha-1,4-glucosidic bonds of
maltosaccharides. Dextran glucosidase (DGase, EC
3.2.1.70) hydrolyzes alpha-1,6-glucosidic linkages at
the non-reducing end of panose,
isomaltooligosaccharides and dextran to produce
alpha-glucose.The common reaction chemistry of the
alpha-amylase family enzymes is based on a two-step
acid catalytic mechanism that requires two critical
carboxylates: one acting as a general acid/base (Glu)
and the other as a nucleophile (Asp). Both hydrolysis
and transglycosylation proceed via the nucleophilic
substitution reaction between the anomeric carbon, C1
and a nucleophile. Both enzymes contain the three
catalytic residues (Asp, Glu and Asp) common to the
alpha-amylase family as well as two histidine residues
which are predicted to be critical to binding the
glucose residue adjacent to the scissile bond in the
substrates. The Alpha-amylase family comprises the
largest family of glycoside hydrolases (GH), with the
majority of enzymes acting on starch, glycogen, and
related oligo- and polysaccharides. These proteins
catalyze the transformation of alpha-1,4 and alpha-1,6
glucosidic linkages with retention of the anomeric
center. The protein is described as having 3 domains:
A, B, C. A is a (beta/alpha) 8-barrel; B is a loop
between the beta 3 strand and alpha 3 helix of A; C is
the C-terminal extension characterized by a Greek key.
The majority of the enzymes have an active site cleft
found between domains A and B where a triad of
catalytic residues performs catalysis. Other members of
this family have lost the catalytic activity as in the
case of the human 4F2hc, or only have 2 residues that
serve as the catalytic nucleophile and the acid/base,
such as Thermus A4 beta-galactosidase with 2 Glu
residues (GH42) and human alpha-galactosidase with 2
Asp residues (GH31). The family members are quite
extensive and include: alpha amylase,
maltosyltransferase, cyclodextrin glycotransferase,
maltogenic amylase, neopullulanase, isoamylase,
1,4-alpha-D-glucan maltotetrahydrolase,
4-alpha-glucotransferase, oligo-1,6-glucosidase,
amylosucrase, sucrose phosphorylase, and amylomaltase.
Length = 428
Score = 29.0 bits (66), Expect = 0.24
Identities = 9/25 (36%), Positives = 14/25 (56%), Gaps = 6/25 (24%)
Query: 5 EDVEKVVQVAHDHN------LVVNH 23
ED +++++ AH LVVNH
Sbjct: 73 EDFDELIKEAHKRGIKIIMDLVVNH 97
>gnl|CDD|223882 COG0812, MurB, UDP-N-acetylmuramate dehydrogenase [Cell envelope
biogenesis, outer membrane].
Length = 291
Score = 28.7 bits (65), Expect = 0.34
Identities = 7/35 (20%), Positives = 17/35 (48%)
Query: 31 RYWCITESTEDVEKVVQVAHDHNLVIIPFGGGTNV 65
E+++ ++ A +L ++ GGG+N+
Sbjct: 22 EVLVEPRDIEELKAALKYAKAEDLPVLILGGGSNL 56
>gnl|CDD|224831 COG1920, COG1920, Predicted nucleotidyltransferase, CobY/MobA/RfbA
family [General function prediction only].
Length = 210
Score = 27.4 bits (61), Expect = 0.87
Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 38 STEDVEKVVQVAHDHNLVIIP-FGGGTNV 65
S E +E+ + A D ++VI P GGGTNV
Sbjct: 100 SPEHIERALSAAKDADVVIAPGRGGGTNV 128
>gnl|CDD|162358 TIGR01437, selA_rel, uncharacterized pyridoxal phosphate-dependent
enzyme. This model describes a protein related to a
number of pyridoxal phosphate-dependent enzymes, and in
particular to selenocysteine synthase (SelA), which
converts Ser to selenocysteine on its tRNA. While
resembling SelA, this protein is found only in species
that have a better candidate SelA or else lack the other
genes (selB, selC, and selD) required for selenocysteine
incorporation [Unknown function, Enzymes of unknown
specificity].
Length = 363
Score = 27.3 bits (61), Expect = 1.0
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 34 CITESTEDVEKVVQVAHDHNLVII 57
C+ +S VE QVA +HNL +I
Sbjct: 160 CVQKSMLSVEDAAQVAQEHNLPLI 183
Score = 25.8 bits (57), Expect = 3.8
Identities = 10/18 (55%), Positives = 11/18 (61%)
Query: 2 KSTEDVEKVVQVAHDHNL 19
KS VE QVA +HNL
Sbjct: 163 KSMLSVEDAAQVAQEHNL 180
>gnl|CDD|171497 PRK12436, PRK12436, UDP-N-acetylenolpyruvoylglucosamine
reductase; Provisional.
Length = 305
Score = 27.3 bits (60), Expect = 1.1
Identities = 11/49 (22%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 19 LVVNHQAIFIGTR--YWCITESTEDVEKVVQVAHDHNLVIIPFGGGTNV 65
++ NH I +G + + + +++++V++ A+ +N+ + G G+NV
Sbjct: 24 MLKNHTHIKVGGKADVFVAPTNYDEIQEVIKYANKYNIPVTFLGNGSNV 72
>gnl|CDD|191388 pfam05849, L-fibroin, Fibroin light chain (L-fibroin). This family
consists of several moth fibroin light chain (L-fibroin)
proteins. Fibroin of the silkworm, Bombyx mori, is
secreted into the lumen of posterior silk gland (PSG)
from the surrounding PSG cells as a molecular complex
consisting of a heavy (H)-chain of approximately 350
kDa, a light (L)-chain of 25 kDa and a P25 of about 27
kDa. The H- and L-chains are disulfide-linked but P25 is
associated with the H-L complex by non-covalent force.
Length = 245
Score = 26.8 bits (59), Expect = 1.3
Identities = 15/57 (26%), Positives = 20/57 (35%), Gaps = 3/57 (5%)
Query: 22 NHQAIFIGTRYWCITESTEDVEKVVQVAHDH-NLVIIPFGGGTNVTGAVACPENELR 77
N ++ +G S V +V Q V+ G N GA A NEL
Sbjct: 188 NSRSNNVGA-AITAR-SLPPVTQVFQTVLGSIMNVLRAIANGGNAIGAAASAINELA 242
>gnl|CDD|234593 PRK00046, murB, UDP-N-acetylenolpyruvoylglucosamine reductase;
Provisional.
Length = 334
Score = 27.0 bits (61), Expect = 1.3
Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 6/59 (10%)
Query: 31 RYWCITESTEDVEKVVQVAHDHNLVIIPFGGGTNV------TGAVACPENELRTIISLD 83
R+ ES E + + + A L ++ GGG+NV G V + ++S D
Sbjct: 22 RHLVEAESEEQLLEALADARAAGLPVLVLGGGSNVLFTEDFDGTVLLNRIKGIEVLSED 80
>gnl|CDD|215258 PLN02465, PLN02465, L-galactono-1,4-lactone dehydrogenase.
Length = 573
Score = 26.7 bits (59), Expect = 1.8
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 30 TRYWCITESTEDVEKVVQVAHDHNLVIIPFGGG 62
TR + ES E++E +V+ AH+ I P G G
Sbjct: 97 TRRYHQPESLEELEDIVKEAHEKGRRIRPVGSG 129
>gnl|CDD|225428 COG2873, MET17, O-acetylhomoserine sulfhydrylase [Amino acid
transport and metabolism].
Length = 426
Score = 26.5 bits (59), Expect = 1.9
Identities = 6/17 (35%), Positives = 12/17 (70%)
Query: 41 DVEKVVQVAHDHNLVII 57
D+E + ++AH H + +I
Sbjct: 165 DIEAIAEIAHRHGVPLI 181
Score = 25.3 bits (56), Expect = 5.6
Identities = 5/16 (31%), Positives = 11/16 (68%)
Query: 6 DVEKVVQVAHDHNLVV 21
D+E + ++AH H + +
Sbjct: 165 DIEAIAEIAHRHGVPL 180
>gnl|CDD|235772 PRK06290, PRK06290, aspartate aminotransferase; Provisional.
Length = 410
Score = 26.5 bits (59), Expect = 2.0
Identities = 7/25 (28%), Positives = 14/25 (56%)
Query: 8 EKVVQVAHDHNLVVNHQAIFIGTRY 32
E+VV A ++N++V A + +
Sbjct: 202 EEVVDFAKENNIIVVQDAAYAALTF 226
>gnl|CDD|179803 PRK04260, PRK04260, acetylornithine aminotransferase; Provisional.
Length = 375
Score = 26.3 bits (58), Expect = 2.4
Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Query: 37 ESTEDVEKVVQVAHDHNLVIIPFGGGTNV 65
E+T D+ ++V+ A D L+++ GTNV
Sbjct: 324 ETTADLSQLVEAARDKGLIVLT--AGTNV 350
>gnl|CDD|238739 cd01462, VWA_YIEM_type, VWA YIEM type: Von Willebrand factor type
A (vWA) domain was originally found in the blood
coagulation protein von Willebrand factor (vWF).
Typically, the vWA domain is made up of approximately
200 amino acid residues folded into a classic a/b
para-rossmann type of fold. The vWA domain, since its
discovery, has drawn great interest because of its
widespread occurrence and its involvement in a wide
variety of important cellular functions. These include
basal membrane formation, cell migration, cell
differentiation, adhesion, haemostasis, signaling,
chromosomal stability, malignant transformation and in
immune defenses In integrins these domains form
heterodimers while in vWF it forms multimers. There are
different interaction surfaces of this domain as seen
by the various molecules it complexes with. Ligand
binding in most cases is mediated by the presence of a
metal ion dependent adhesion site termed as the MIDAS
motif that is a characteristic feature of most, if not
all A domains. Members of this subgroup have a
conserved MIDAS motif, however, their biochemical
function is not well characterised.
Length = 152
Score = 25.8 bits (57), Expect = 2.6
Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 5/36 (13%)
Query: 35 ITESTEDVEKVVQVAHDHNLVIIPFGGGTNVTGAVA 70
I + T+D+E+ V+ L + GGGT++ A+
Sbjct: 52 IVDKTDDLEEPVEF-----LSGVQLGGGTDINKALR 82
>gnl|CDD|237553 PRK13905, murB, UDP-N-acetylenolpyruvoylglucosamine reductase;
Provisional.
Length = 298
Score = 25.8 bits (58), Expect = 2.8
Identities = 6/29 (20%), Positives = 18/29 (62%)
Query: 37 ESTEDVEKVVQVAHDHNLVIIPFGGGTNV 65
ED+++ +++ ++N+ + G G+N+
Sbjct: 38 ADIEDLQEFLKLLKENNIPVTVLGNGSNL 66
>gnl|CDD|183043 PRK11230, PRK11230, glycolate oxidase subunit GlcD; Provisional.
Length = 499
Score = 25.9 bits (57), Expect = 3.0
Identities = 8/31 (25%), Positives = 17/31 (54%)
Query: 37 ESTEDVEKVVQVAHDHNLVIIPFGGGTNVTG 67
+ E V+ ++ V H + ++ G GT ++G
Sbjct: 63 KQMEQVQALLAVCHRLRVPVVARGAGTGLSG 93
>gnl|CDD|99734 cd00609, AAT_like, Aspartate aminotransferase family. This family
belongs to pyridoxal phosphate (PLP)-dependent aspartate
aminotransferase superfamily (fold I). Pyridoxal
phosphate combines with an alpha-amino acid to form a
compound called a Schiff base or aldimine intermediate,
which depending on the reaction, is the substrate in
four kinds of reactions (1) transamination (movement of
amino groups), (2) racemization (redistribution of
enantiomers), (3) decarboxylation (removing COOH
groups), and (4) various side-chain reactions depending
on the enzyme involved. Pyridoxal phosphate (PLP)
dependent enzymes were previously classified into alpha,
beta and gamma classes, based on the chemical
characteristics (carbon atom involved) of the reaction
they catalyzed. The availability of several structures
allowed a comprehensive analysis of the evolutionary
classification of PLP dependent enzymes, and it was
found that the functional classification did not always
agree with the evolutionary history of these enzymes.
The major groups in this CD corresponds to Aspartate
aminotransferase a, b and c, Tyrosine, Alanine,
Aromatic-amino-acid, Glutamine phenylpyruvate,
1-Aminocyclopropane-1-carboxylate synthase,
Histidinol-phosphate, gene products of malY and cobC,
Valine-pyruvate aminotransferase and Rhizopine
catabolism regulatory protein.
Length = 350
Score = 25.8 bits (57), Expect = 3.0
Identities = 11/49 (22%), Positives = 22/49 (44%), Gaps = 6/49 (12%)
Query: 38 STEDVEKVVQVAHDHNLVII------PFGGGTNVTGAVACPENELRTII 80
S E++E++ ++A H ++II A+A + R I+
Sbjct: 150 SEEELEELAELAKKHGILIISDEAYAELVYDGEPPPALALLDAYERVIV 198
>gnl|CDD|223238 COG0160, GabT, 4-aminobutyrate aminotransferase and related
aminotransferases [Amino acid transport and metabolism].
Length = 447
Score = 26.0 bits (58), Expect = 3.2
Identities = 8/28 (28%), Positives = 13/28 (46%)
Query: 38 STEDVEKVVQVAHDHNLVIIPFGGGTNV 65
E K+V A + L+++ G NV
Sbjct: 391 DAELAAKIVARAFERGLLLLTCGPHGNV 418
>gnl|CDD|181320 PRK08247, PRK08247, cystathionine gamma-synthase; Reviewed.
Length = 366
Score = 25.4 bits (56), Expect = 3.9
Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 22 NHQAIFIGTRYWCITESTEDVEKVVQVAHDHNLVII 57
N +AIFI T + + T D+ + ++A H L++I
Sbjct: 136 NTKAIFIETPTNPLMQET-DIAAIAKIAKKHGLLLI 170
>gnl|CDD|217646 pfam03630, Fumble, Fumble. Fumble is required for cell division
in Drosophila. Mutants lacking fumble exhibit
abnormalities in bipolar spindle organisation,
chromosome segregation, and contractile ring formation.
Analyses have demonstrated that encodes three protein
isoforms, all of which contain a domain with high
similarity to the pantothenate kinases of A. nidulans
and mouse. A role of fumble in membrane synthesis has
been proposed.
Length = 329
Score = 25.4 bits (56), Expect = 4.3
Identities = 9/40 (22%), Positives = 15/40 (37%), Gaps = 5/40 (12%)
Query: 28 IGTRYWCITESTEDVEKVVQVAHDHNL-----VIIPFGGG 62
R I T D++ ++ + L V+ GGG
Sbjct: 42 RRGRLHFIKFETTDIDLFLEFLKEKLLNKLTTVLCATGGG 81
>gnl|CDD|216267 pfam01053, Cys_Met_Meta_PP, Cys/Met metabolism PLP-dependent
enzyme. This family includes enzymes involved in
cysteine and methionine metabolism. The following are
members: Cystathionine gamma-lyase, Cystathionine
gamma-synthase, Cystathionine beta-lyase, Methionine
gamma-lyase, OAH/OAS sulfhydrylase, O-succinylhomoserine
sulfhydrylase All of these members participate is
slightly different reactions. All these enzymes use PLP
(pyridoxal-5'-phosphate) as a cofactor.
Length = 382
Score = 25.6 bits (57), Expect = 4.3
Identities = 4/17 (23%), Positives = 11/17 (64%)
Query: 41 DVEKVVQVAHDHNLVII 57
D+E + ++A H +++
Sbjct: 155 DIEAIAKIAKKHGALVV 171
Score = 24.9 bits (55), Expect = 7.0
Identities = 5/16 (31%), Positives = 10/16 (62%)
Query: 6 DVEKVVQVAHDHNLVV 21
D+E + ++A H +V
Sbjct: 155 DIEAIAKIAKKHGALV 170
>gnl|CDD|181749 PRK09276, PRK09276, LL-diaminopimelate aminotransferase;
Provisional.
Length = 385
Score = 25.6 bits (57), Expect = 4.3
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 8 EKVVQVAHDHNLVVNHQA 25
E+VV A ++++V H A
Sbjct: 189 EEVVDFAKKYDIIVCHDA 206
>gnl|CDD|200459 cd11320, AmyAc_AmyMalt_CGTase_like, Alpha amylase catalytic domain
found in maltogenic amylases, cyclodextrin
glycosyltransferase, and related proteins. Enzymes such
as amylases, cyclomaltodextrinase (CDase), and
cyclodextrin glycosyltransferase (CGTase) degrade starch
to smaller oligosaccharides by hydrolyzing the
alpha-D-(1,4) linkages between glucose residues. In the
case of CGTases, an additional cyclization reaction is
catalyzed yielding mixtures of cyclic oligosaccharides
which are referred to as alpha-, beta-, or
gamma-cyclodextrins (CDs), consisting of six, seven, or
eight glucose residues, respectively. CGTases are
characterized depending on the major product of the
cyclization reaction. Besides having similar catalytic
site residues, amylases and CGTases contain carbohydrate
binding domains that are distant from the active site
and are implicated in attaching the enzyme to raw starch
granules and in guiding the amylose chain into the
active site. The maltogenic alpha-amylase from Bacillus
is a five-domain structure, unlike most alpha-amylases,
but similar to that of cyclodextrin glycosyltransferase.
In addition to the A, B, and C domains, they have a
domain D and a starch-binding domain E. Maltogenic
amylase is an endo-acting amylase that has activity on
cyclodextrins, terminally modified linear maltodextrins,
and amylose. The Alpha-amylase family comprises the
largest family of glycoside hydrolases (GH), with the
majority of enzymes acting on starch, glycogen, and
related oligo- and polysaccharides. These proteins
catalyze the transformation of alpha-1,4 and alpha-1,6
glucosidic linkages with retention of the anomeric
center. The protein is described as having 3 domains: A,
B, C. A is a (beta/alpha) 8-barrel; B is a loop between
the beta 3 strand and alpha 3 helix of A; C is the
C-terminal extension characterized by a Greek key. The
majority of the enzymes have an active site cleft found
between domains A and B where a triad of catalytic
residues (Asp, Glu and Asp) performs catalysis. Other
members of this family have lost the catalytic activity
as in the case of the human 4F2hc, or only have 2
residues that serve as the catalytic nucleophile and the
acid/base, such as Thermus A4 beta-galactosidase with 2
Glu residues (GH42) and human alpha-galactosidase with 2
Asp residues (GH31). The family members are quite
extensive and include: alpha amylase,
maltosyltransferase, cyclodextrin glycotransferase,
maltogenic amylase, neopullulanase, isoamylase,
1,4-alpha-D-glucan maltotetrahydrolase,
4-alpha-glucotransferase, oligo-1,6-glucosidase,
amylosucrase, sucrose phosphorylase, and amylomaltase.
Length = 389
Score = 25.3 bits (56), Expect = 4.5
Identities = 9/23 (39%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Query: 38 STEDVEKVVQVAHDHNL-VIIPF 59
+ ED +++V AH + + VII F
Sbjct: 102 TWEDFDELVDAAHANGIKVIIDF 124
Score = 24.9 bits (55), Expect = 6.7
Identities = 8/27 (29%), Positives = 14/27 (51%), Gaps = 6/27 (22%)
Query: 3 STEDVEKVVQVAHDHNL------VVNH 23
+ ED +++V AH + + V NH
Sbjct: 102 TWEDFDELVDAAHANGIKVIIDFVPNH 128
>gnl|CDD|181615 PRK09028, PRK09028, cystathionine beta-lyase; Provisional.
Length = 394
Score = 25.5 bits (56), Expect = 4.6
Identities = 8/23 (34%), Positives = 17/23 (73%)
Query: 35 ITESTEDVEKVVQVAHDHNLVII 57
IT +DV + ++AH+H++V++
Sbjct: 158 ITMEVQDVPTLSRIAHEHDIVVM 180
>gnl|CDD|223448 COG0371, GldA, Glycerol dehydrogenase and related enzymes [Energy
production and conversion].
Length = 360
Score = 25.3 bits (56), Expect = 4.9
Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 38 STEDVEKVVQVAHDHNL-VIIPFGGGT 63
S E+VE++ A + V+I GGG
Sbjct: 69 SEEEVERLAAEAGEDGADVVIGVGGGK 95
>gnl|CDD|239010 cd02055, PZI, Protein Z-dependent protease inhibitor (ZPI) is a
member of the serpin superfamily of proteinase
inhibitors (clade A10). ZPI inhibits coagulation factor
Xa , dependent on protein Z (PZ), a vitamin K-dependent
plasma protein. ZPI also inhibits factor XIa in a
process that does not require PZ. In general, SERine
Proteinase INhibitors (serpins) exhibit conformational
polymorphism shifting from native to cleaved, latent,
delta, or polymorphic forms.
Length = 365
Score = 25.3 bits (55), Expect = 5.3
Identities = 10/36 (27%), Positives = 17/36 (47%)
Query: 46 VQVAHDHNLVIIPFGGGTNVTGAVACPENELRTIIS 81
+ + HD N++ PFG + G + E E I+
Sbjct: 17 IAMKHDGNIIFSPFGMSLAMAGLLLAAEGETERQIA 52
>gnl|CDD|223242 COG0164, RnhB, Ribonuclease HII [DNA replication, recombination,
and repair].
Length = 199
Score = 24.9 bits (55), Expect = 6.6
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 65 VTGAVACPENELRTIISLDTSQMQSP 90
V AV P + L + L S+ SP
Sbjct: 18 VAAAVILPPDRLPKKLGLKDSKKLSP 43
>gnl|CDD|236872 PRK11183, PRK11183, D-lactate dehydrogenase; Provisional.
Length = 564
Score = 24.8 bits (55), Expect = 7.0
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 44 KVVQVAHDHNLVIIPFGGGTNVTG 67
+V+Q + +II T +TG
Sbjct: 53 RVLQACVAADKIIIMQAANTGLTG 76
>gnl|CDD|99738 cd00614, CGS_like, CGS_like: Cystathionine gamma-synthase is a PLP
dependent enzyme and catalyzes the committed step of
methionine biosynthesis. This pathway is unique to
microorganisms and plants, rendering the enzyme an
attractive target for the development of antimicrobials
and herbicides. This subgroup also includes
cystathionine gamma-lyases (CGL), O-acetylhomoserine
sulfhydrylases and O-acetylhomoserine thiol lyases.
CGL's are very similar to CGS's. Members of this group
are widely distributed among all three forms of life.
Length = 369
Score = 24.5 bits (54), Expect = 8.8
Identities = 5/17 (29%), Positives = 13/17 (76%)
Query: 41 DVEKVVQVAHDHNLVII 57
D+E + ++AH+H +++
Sbjct: 143 DIEAIAELAHEHGALLV 159
>gnl|CDD|236201 PRK08248, PRK08248, O-acetylhomoserine
aminocarboxypropyltransferase; Validated.
Length = 431
Score = 24.8 bits (54), Expect = 9.0
Identities = 7/17 (41%), Positives = 12/17 (70%)
Query: 41 DVEKVVQVAHDHNLVII 57
D+E V +AH+H + +I
Sbjct: 167 DIEAVAAIAHEHGIPLI 183
>gnl|CDD|202394 pfam02783, MCR_beta_N, Methyl-coenzyme M reductase beta subunit,
N-terminal domain. Methyl-coenzyme M reductase (MCR) is
the enzyme responsible for microbial formation of
methane. It is a hexamer composed of 2 alpha
(pfam02249), 2 beta (this family), and 2 gamma
(pfam02240) subunits with two identical nickel
porphinoid active sites. The N-terminal domain has an
alpha/beta ferredoxin-like fold.
Length = 182
Score = 24.3 bits (53), Expect = 9.1
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 40 EDVEKVVQVAHDHNLVIIPFGGG 62
E V+K+VQV+ D + + GG
Sbjct: 82 EKVKKMVQVSEDDDTNVKLINGG 104
>gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of
iron-sulfur clusters transporter, subfamily C. ATM1 is
an ABC transporter that is expressed in the
mitochondria. Although the specific function of ATM1 is
unknown, its disruption results in the accumulation of
excess mitochondrial iron, loss of mitochondrial
cytochromes, oxidative damage to mitochondrial DNA, and
decreased levels of cytosolic heme proteins. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 236
Score = 24.5 bits (54), Expect = 9.4
Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 31 RYWCITESTEDVEKVVQVAHDHNLVI-IPFGGGTNV 65
RY + E+V + + A H+ ++ P G T V
Sbjct: 96 RYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIV 131
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.131 0.386
Gapped
Lambda K H
0.267 0.0606 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,263,498
Number of extensions: 338681
Number of successful extensions: 493
Number of sequences better than 10.0: 1
Number of HSP's gapped: 493
Number of HSP's successfully gapped: 49
Length of query: 90
Length of database: 10,937,602
Length adjustment: 58
Effective length of query: 32
Effective length of database: 8,365,070
Effective search space: 267682240
Effective search space used: 267682240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.5 bits)