RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4717
(90 letters)
>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein,
lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A
{Dictyostelium discoideum} PDB: 2uuv_A*
Length = 584
Score = 73.6 bits (181), Expect = 3e-17
Identities = 24/51 (47%), Positives = 37/51 (72%), Gaps = 1/51 (1%)
Query: 37 ESTEDVEKVVQVAHDHNLVIIPFGGGTNVTGAVACPENELRTIISLDTSQM 87
S E+VE++VQ+AH +N+VIIP GGG+N+ GA+ P + R +S+D +M
Sbjct: 145 HSHEEVERLVQLAHKYNVVIIPMGGGSNIVGAI-EPVSNERFTVSIDMRRM 194
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit;
flavoprotein, electron-transfer, FAD, oxidoreductase;
HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1
d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A*
Length = 520
Score = 53.1 bits (128), Expect = 5e-10
Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Query: 37 ESTEDVEKVVQVAHDHNLVIIPFGGGTNVTGAVACPENELRTIISLDTSQM 87
+ E V+ VV++ ++H + I G N A P R + LD +M
Sbjct: 64 TTVEQVQGVVKICNEHKIPIWTISTGRNFGYGSAAP--VQRGQVILDLKKM 112
>1f0x_A DLDH, D-lactate dehydrogenase; oxidoreductase; HET: FAD; 1.90A
{Escherichia coli} SCOP: d.58.32.2 d.145.1.1
Length = 571
Score = 46.2 bits (109), Expect = 1e-07
Identities = 8/52 (15%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 37 ESTEDVEKVVQVAHDHNLVIIPFGGGTNVT-GAVACPENELRTIISLDTSQM 87
S ++ +V++ + +I+ T +T G+ + R ++ + T ++
Sbjct: 53 GSLLELWRVLKACVTADKIILMQAANTGLTEGSTPNGNDYDRDVVIISTLRL 104
>2i0k_A Oxidoreductase; MIX alpha beta, covalent FAD, flavoenzyme; HET:
FAD; 1.60A {Brevibacterium sterolicum} SCOP: d.58.32.3
d.145.1.1 PDB: 1i19_A*
Length = 561
Score = 45.1 bits (106), Expect = 3e-07
Identities = 12/48 (25%), Positives = 21/48 (43%)
Query: 37 ESTEDVEKVVQVAHDHNLVIIPFGGGTNVTGAVACPENELRTIISLDT 84
++ +DV ++ AH+H+ I P G T + +I DT
Sbjct: 43 KTPQDVVRLANWAHEHDYKIRPRGAMAGWTPLTVEKGANVEKVILADT 90
>3js8_A Cholesterol oxidase; cholsterol, organic solvent stability,
oxygen channel, FAD, flavoprotein, oxidoreductase; HET:
FAD SUC; 1.54A {Chromobacterium SP}
Length = 540
Score = 44.8 bits (105), Expect = 5e-07
Identities = 11/53 (20%), Positives = 21/53 (39%)
Query: 37 ESTEDVEKVVQVAHDHNLVIIPFGGGTNVTGAVACPENELRTIISLDTSQMQS 89
S ++V KV A D+ + G N + ++ LDT++ +
Sbjct: 37 RSADEVVKVANWAKDNGYKVRARGMMHNWSPLTLAAGVSCPAVVLLDTTRYLT 89
>1e8g_A Vanillyl-alcohol oxidase; oxidoreductase, flavoenzyme, specificity;
HET: FAD FCR; 2.1A {Penicillium simplicissimum} SCOP:
d.58.32.1 d.145.1.1 PDB: 1e8f_A* 1e8h_A* 1qlt_A* 1qlu_A*
1vao_A* 1ahv_A* 1ahz_A* 1ahu_A* 2vao_A* 1w1j_A* 1dzn_A*
1w1l_A* 1e0y_A* 1w1k_A* 1w1m_A*
Length = 560
Score = 44.1 bits (104), Expect = 9e-07
Identities = 11/52 (21%), Positives = 20/52 (38%), Gaps = 6/52 (11%)
Query: 37 ESTEDVEKVVQVAHDHNLVIIPFGGGTN--VTGAVACPENELRTIISLDTSQ 86
+ DV+ +V +A+ + + P G N GA + LD +
Sbjct: 78 RNVADVQSIVGLANKFSFPLWPISIGRNSGYGGAAPRVSGS----VVLDMGK 125
Score = 28.3 bits (63), Expect = 0.30
Identities = 4/20 (20%), Positives = 12/20 (60%)
Query: 2 KSTEDVEKVVQVAHDHNLVV 21
++ DV+ +V +A+ + +
Sbjct: 78 RNVADVQSIVGLANKFSFPL 97
>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate
dehydrogenase, putative D-LACT dehydrogenase; HET: FAD;
2.57A {Rhodopseudomonas palustris}
Length = 476
Score = 43.3 bits (103), Expect = 1e-06
Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 9/56 (16%)
Query: 37 ESTEDVEKVVQVAHDHNLVIIPFGGGTNVTGAVACPENE--------LRTIISLDT 84
STE+V + ++A++ + ++P GG T + G P N + I +DT
Sbjct: 59 GSTEEVVAICKLANEARVALVPQGGNTGLVGG-QTPHNGEVVISLKRMDKIREIDT 113
Score = 27.5 bits (62), Expect = 0.52
Identities = 5/20 (25%), Positives = 13/20 (65%)
Query: 2 KSTEDVEKVVQVAHDHNLVV 21
STE+V + ++A++ + +
Sbjct: 59 GSTEEVVAICKLANEARVAL 78
>1w1o_A Cytokinin dehydrogenase 1; flavin, oxidoreductase, flavoprotein,
FAD; HET: NAG FAD; 1.7A {Zea mays} SCOP: d.58.32.4
d.145.1.1 PDB: 1w1q_A* 1w1r_A* 1w1s_A* 3dq0_A* 2qkn_A*
3c0p_A* 3bw7_A* 2qpm_A* 3kjm_A*
Length = 534
Score = 37.7 bits (87), Expect = 1e-04
Identities = 8/56 (14%), Positives = 19/56 (33%), Gaps = 8/56 (14%)
Query: 37 ESTEDVEKVVQVAHDHNLVIIPF---GGGTNVTGAVACPENELRTIISLDTSQMQS 89
ST D+ ++ A+ G G ++ G P + ++ + +
Sbjct: 76 SSTGDLVALLSAANSTPGWPYTIAFRGRGHSLMGQAFAPGG-----VVVNMASLGD 126
Score = 25.0 bits (54), Expect = 3.6
Identities = 4/17 (23%), Positives = 8/17 (47%)
Query: 2 KSTEDVEKVVQVAHDHN 18
ST D+ ++ A+
Sbjct: 76 SSTGDLVALLSAANSTP 92
>3fw9_A Reticuline oxidase; BI-covalent flavinylation, N-glycosylation,
alakloid biosynt oxidoreductase, alkaloid metabolism;
HET: FAD SLX NAG MAN; 1.49A {Eschscholzia californica}
PDB: 3d2h_A* 3d2d_A* 3d2j_A* 3gsy_A* 3fw8_A* 3fw7_A*
3fwa_A*
Length = 495
Score = 35.3 bits (81), Expect = 0.001
Identities = 8/53 (15%), Positives = 17/53 (32%), Gaps = 3/53 (5%)
Query: 37 ESTEDVEKVVQVAHDHNLVIIPFGGGTNVTGAVACPENELRTIISLDTSQMQS 89
S E++ ++ + I GG + G + I +D +
Sbjct: 53 GSKEELSNTIRCIRKGSWTIRLRSGGHSYEGLSYTSDTPF---ILIDLMNLNR 102
>2ipi_A Aclacinomycin oxidoreductase (aknox); anthracycline, flavoenzyme,
twinning, MAD; HET: AKY FAD; 1.65A {Streptomyces
galilaeus}
Length = 521
Score = 34.5 bits (79), Expect = 0.002
Identities = 13/53 (24%), Positives = 17/53 (32%), Gaps = 4/53 (7%)
Query: 37 ESTEDVEKVVQVAHDHNLVIIPFGGGTNVTGAVACPENELRTIISLDTSQMQS 89
+ + V V A I GG G V P +D SQM+
Sbjct: 63 HTADQVVDAVNQAMAAGQRIAVRSGGHCFEGFVDDPAVRA----VIDMSQMRQ 111
>2wdx_A Putative hexose oxidase; oxidoreductase-antibiotic complex,
glycopeptide; HET: FAD GHP 3MY 3FG OMY BMA NAG N1L T55;
2.30A {Nonomuraea SP} PDB: 2wdw_A*
Length = 523
Score = 34.2 bits (78), Expect = 0.003
Identities = 10/53 (18%), Positives = 18/53 (33%), Gaps = 4/53 (7%)
Query: 37 ESTEDVEKVVQVAHDHNLVIIPFGGGTNVTGAVACPENELRTIISLDTSQMQS 89
ST+ V V+ + GG V P+ ++ +D S +
Sbjct: 65 GSTQQVADAVEETVRTGKRVAVRSGGHCFEDFVDNPDVKV----IIDMSLLTE 113
>3vte_A Tetrahydrocannabinolic acid synthase; BI-covalent flavinylation,
oxidoreductase; HET: NAG FAD; 2.75A {Cannabis sativa}
Length = 518
Score = 33.8 bits (77), Expect = 0.004
Identities = 8/53 (15%), Positives = 17/53 (32%), Gaps = 3/53 (5%)
Query: 37 ESTEDVEKVVQVAHDHNLVIIPFGGGTNVTGAVACPENELRTIISLDTSQMQS 89
+ ++ + + L I GG + G + + +D M S
Sbjct: 61 SNNSHIQATILCSKKVGLQIRTRSGGHDAEGMSYISQV---PFVVVDLRNMHS 110
>2bvf_A 6-hydroxy-D-nicotine oxidase; autoflavinylation, enantiomeric
substrates, flavoenzymes, NI degradation; HET: FAD;
1.92A {Arthrobacter nicotinovorans} PDB: 2bvg_A*
2bvh_A*
Length = 459
Score = 33.6 bits (77), Expect = 0.004
Identities = 18/53 (33%), Positives = 20/53 (37%), Gaps = 5/53 (9%)
Query: 37 ESTEDVEKVVQVAHDHNLVIIPFGGGTNVTGAVACPENELRTIISLDTSQMQS 89
S DV K V+ A D+ L I GG N G I LD M S
Sbjct: 46 LSAGDVAKSVRYACDNGLEISVRSGGHNPNGYATNDGG-----IVLDLRLMNS 93
Score = 24.7 bits (54), Expect = 5.6
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 2 KSTEDVEKVVQVAHDHNLVV 21
S DV K V+ A D+ L +
Sbjct: 46 LSAGDVAKSVRYACDNGLEI 65
>3pop_A GILR oxidase; FAD binding protein, gilvocarcin, gilvocarcin
biosynthesis, covalently bound FAD, oxidoreductase;
HET: FAD; 1.65A {Streptomyces griseoflavus} PDB:
3pqb_A*
Length = 501
Score = 33.3 bits (76), Expect = 0.005
Identities = 11/53 (20%), Positives = 18/53 (33%), Gaps = 4/53 (7%)
Query: 37 ESTEDVEKVVQVAHDHNLVIIPFGGGTNVTGAVACPENELRTIISLDTSQMQS 89
+ +DV +Q A + GG V P +L LD + +
Sbjct: 42 ATPDDVVASLQKAVTEGRGVACRSGGHCGQDFVGTPRRDL----VLDLHNLHA 90
>2y3s_A TAML; oxidoreductase; HET: FAD TIR; 1.67A {Streptomyces SP} PDB:
2y3r_A* 2y08_A* 2y4g_A*
Length = 530
Score = 33.0 bits (75), Expect = 0.008
Identities = 10/53 (18%), Positives = 21/53 (39%), Gaps = 4/53 (7%)
Query: 37 ESTEDVEKVVQVAHDHNLVIIPFGGGTNVTGAVACPENELRTIISLDTSQMQS 89
S ++E+V+ A + GG VA + + +D S++ +
Sbjct: 66 GSAAEIEQVLSRAVRSGKRVAVRSGGHCYEDFVANSDVRV----VMDMSRLSA 114
>1uxy_A MURB, uridine diphospho-N-acetylenolpyruvylglucosamine reductase;
peptidoglycan synthesis, cell WALL, cell division,
oxidoreductase, NADP; HET: FAD EPU; 1.80A {Escherichia
coli} SCOP: d.145.1.2 d.146.1.1 PDB: 1mbb_A* 1mbt_A*
2q85_A* 2mbr_A*
Length = 340
Score = 32.5 bits (75), Expect = 0.010
Identities = 7/35 (20%), Positives = 14/35 (40%)
Query: 31 RYWCITESTEDVEKVVQVAHDHNLVIIPFGGGTNV 65
++ E + + Q A ++ G G+NV
Sbjct: 16 QHIVCAEDEQQLLNAWQYATAEGQPVLILGEGSNV 50
>3i99_A UDP-N-acetylenolpyruvoylglucosamine reductase; structural
genomics, center for structural of infectious diseases,
csgid; HET: FAD; 2.20A {Vibrio cholerae}
Length = 357
Score = 31.4 bits (72), Expect = 0.021
Identities = 8/35 (22%), Positives = 17/35 (48%)
Query: 31 RYWCITESTEDVEKVVQVAHDHNLVIIPFGGGTNV 65
+ ES +D++ + A +L + G G+N+
Sbjct: 32 AQLVVAESIDDLKALYCSAEWASLPKLIIGKGSNM 66
>3tx1_A UDP-N-acetylenolpyruvoylglucosamine reductase; structural
genomics, center for structural genomics of infec
diseases, csgid; HET: FAD; 2.69A {Listeria
monocytogenes}
Length = 322
Score = 30.6 bits (70), Expect = 0.038
Identities = 7/35 (20%), Positives = 19/35 (54%)
Query: 31 RYWCITESTEDVEKVVQVAHDHNLVIIPFGGGTNV 65
+ + ++ E+ ++VV H + + + G G+N+
Sbjct: 56 DVFVMPKTIEEAQEVVAYCHQNKIPLTILGNGSNL 90
>1hsk_A UDP-N-acetylenolpyruvoylglucosamine reductase; peptidoglycan
synthesis, cell WALL, cell division, oxidoreductase,
NADP, flavoprotein, FAD; HET: FAD; 2.30A
{Staphylococcus aureus} SCOP: d.145.1.2 d.146.1.1
Length = 326
Score = 30.2 bits (69), Expect = 0.059
Identities = 8/35 (22%), Positives = 19/35 (54%)
Query: 31 RYWCITESTEDVEKVVQVAHDHNLVIIPFGGGTNV 65
++ E+V+ VV+ A+ + + + G G+N+
Sbjct: 50 DFYITPTKNEEVQAVVKYAYQNEIPVTYLGNGSNI 84
>1zr6_A Glucooligosaccharide oxidase; alpha + beta, flavoenzyme,
oxidoreductase; HET: NAG FAD; 1.55A {Acremonium
strictum} PDB: 2axr_A* 3e0t_A* 3hsu_A*
Length = 503
Score = 30.1 bits (68), Expect = 0.064
Identities = 14/53 (26%), Positives = 21/53 (39%), Gaps = 3/53 (5%)
Query: 37 ESTEDVEKVVQVAHDHNLVIIPFGGGTNVTGAVACPENELRTIISLDTSQMQS 89
STED+ VQ D + I GGG + E+ + L+ +M
Sbjct: 50 RSTEDIAAAVQCGLDAGVQISAKGGGHSYGSYGFGGEDG---HLMLELDRMYR 99
>3oyo_A Hemopexin fold protein CP4; seeds, plant protein; 2.10A {Vigna
unguiculata}
Length = 225
Score = 29.6 bits (66), Expect = 0.088
Identities = 7/49 (14%), Positives = 18/49 (36%)
Query: 26 IFIGTRYWCITESTEDVEKVVQVAHDHNLVIIPFGGGTNVTGAVACPEN 74
+F G +Y I ++ + ++ D V+ + + A +
Sbjct: 132 LFKGNKYVRIAYDSKQLVGNIRNIGDGFPVLNGTEFESGIDACFASHKE 180
>3rja_A Carbohydrate oxidase; protein-substrate analogue complex, FAD
binding domain, BERB berberine-like domain,
glucooligosaccharide oxidase; HET: FAD NAG ABL TRS;
2.10A {Microdochium nivale} PDB: 3rj8_A*
Length = 473
Score = 29.7 bits (67), Expect = 0.100
Identities = 11/53 (20%), Positives = 20/53 (37%), Gaps = 3/53 (5%)
Query: 37 ESTEDVEKVVQVAHDHNLVIIPFGGGTNVTGAVACPENELRTIISLDTSQMQS 89
++T ++ VQ A NL + GG + EN + + +M
Sbjct: 44 QTTAHIQSAVQCAKKLNLKVSAKSGGHSYASFGFGGENGH---LMVQLDRMID 93
Score = 23.9 bits (52), Expect = 9.1
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 2 KSTEDVEKVVQVAHDHNLVV 21
++T ++ VQ A NL V
Sbjct: 44 QTTAHIQSAVQCAKKLNLKV 63
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 29.1 bits (64), Expect = 0.15
Identities = 8/52 (15%), Positives = 21/52 (40%), Gaps = 9/52 (17%)
Query: 3 STEDVEKVVQVAHDHNLVVNHQAIFIGTRYWCITESTED-VEKVVQVAHDHN 53
S E+++ ++ + + + +W + E+ V+K V+ N
Sbjct: 47 SKEEIDHIIMSKDAVS-----GTLRL---FWTLLSKQEEMVQKFVEEVLRIN 90
>1m53_A Isomaltulose synthase; klebsiella SP. LX3, sucrose isomerization,
isomerase; 2.20A {Klebsiella SP} SCOP: b.71.1.1 c.1.8.1
Length = 570
Score = 28.3 bits (64), Expect = 0.29
Identities = 7/25 (28%), Positives = 11/25 (44%), Gaps = 6/25 (24%)
Query: 5 EDVEKVVQVAHDHN------LVVNH 23
ED + +V N +V+NH
Sbjct: 93 EDFDSLVAEMKKRNMRLMIDVVINH 117
>3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics,
structural genomics consortium, disease mutation,
phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens}
PDB: 3pdx_A*
Length = 427
Score = 28.0 bits (63), Expect = 0.32
Identities = 7/51 (13%), Positives = 16/51 (31%), Gaps = 10/51 (19%)
Query: 38 STEDVEKVVQVAHDHNLVIIP--------FGGGTNVTGAVACPENELRTII 80
S ++K++ VA + I+ F A ++ +
Sbjct: 209 SKRHLQKILAVAARQCVPILADEIYGDMVFSDCKYEPLATLST--DVPILS 257
>2zic_A Dextran glucosidase; TIM barrel, (beta/alpha)8-barrel, hydrolase;
2.20A {Streptococcus mutans} PDB: 2zid_A*
Length = 543
Score = 28.3 bits (64), Expect = 0.33
Identities = 7/25 (28%), Positives = 11/25 (44%), Gaps = 6/25 (24%)
Query: 5 EDVEKVVQVAHDHN------LVVNH 23
D++ ++ A LVVNH
Sbjct: 79 ADMDNLLTQAKMRGIKIIMDLVVNH 103
>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas
aeruginosa}
Length = 412
Score = 27.2 bits (61), Expect = 0.70
Identities = 4/18 (22%), Positives = 13/18 (72%)
Query: 40 EDVEKVVQVAHDHNLVII 57
+ E+VV +A ++++++
Sbjct: 192 DFFERVVALAKQYDVMVV 209
Score = 26.8 bits (60), Expect = 1.0
Identities = 6/19 (31%), Positives = 13/19 (68%)
Query: 5 EDVEKVVQVAHDHNLVVNH 23
+ E+VV +A ++++V H
Sbjct: 192 DFFERVVALAKQYDVMVVH 210
>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A
{Staphylococcus aureus}
Length = 404
Score = 27.1 bits (61), Expect = 0.75
Identities = 2/18 (11%), Positives = 7/18 (38%)
Query: 40 EDVEKVVQVAHDHNLVII 57
E ++ + + I+
Sbjct: 201 EVFDEAIAKFKGTDTKIV 218
Score = 26.4 bits (59), Expect = 1.1
Identities = 2/19 (10%), Positives = 7/19 (36%)
Query: 5 EDVEKVVQVAHDHNLVVNH 23
E ++ + + + H
Sbjct: 201 EVFDEAIAKFKGTDTKIVH 219
>1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism,
pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A
{Trypanosoma cruzi} SCOP: c.67.1.1
Length = 416
Score = 27.2 bits (61), Expect = 0.75
Identities = 6/20 (30%), Positives = 12/20 (60%)
Query: 38 STEDVEKVVQVAHDHNLVII 57
S + VE +V++A + L +
Sbjct: 195 SRKHVEDIVRLAEELRLPLF 214
Score = 24.5 bits (54), Expect = 5.2
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 3 STEDVEKVVQVAHDHNLVV 21
S + VE +V++A + L +
Sbjct: 195 SRKHVEDIVRLAEELRLPL 213
>3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for
structural genomics, JCSG, prote structure initiative,
PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4}
Length = 444
Score = 27.0 bits (60), Expect = 0.76
Identities = 3/20 (15%), Positives = 13/20 (65%)
Query: 38 STEDVEKVVQVAHDHNLVII 57
+ E++ + ++A +++ +I
Sbjct: 224 TDEEMAHLAEIAKRYDIPLI 243
>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics,
joint center for structural genomics, JCSG, prote
structure initiative; HET: MSE; 1.80A {Salmonella
typhimurium}
Length = 417
Score = 26.8 bits (60), Expect = 0.79
Identities = 5/20 (25%), Positives = 15/20 (75%)
Query: 38 STEDVEKVVQVAHDHNLVII 57
+ E++ K+ ++A+ HN+ ++
Sbjct: 198 TDEELMKLDRLANQHNIPLV 217
>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum}
SCOP: c.67.1.1
Length = 388
Score = 27.1 bits (61), Expect = 0.82
Identities = 10/51 (19%), Positives = 23/51 (45%), Gaps = 8/51 (15%)
Query: 38 STEDVEKVVQVAHDHNLVI--------IPFGGGTNVTGAVACPENELRTII 80
+ ++V + QVA + L + I + +++ A PE R+++
Sbjct: 181 TPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVV 231
>1xi9_A Putative transaminase; alanine aminotransferase, southeast
collaboratory for structural genomics, secsg; HET: PLP;
2.33A {Pyrococcus furiosus} SCOP: c.67.1.1
Length = 406
Score = 26.7 bits (60), Expect = 0.82
Identities = 3/20 (15%), Positives = 13/20 (65%)
Query: 38 STEDVEKVVQVAHDHNLVII 57
+ +E+++ +A ++ + +I
Sbjct: 192 DKKTLEEILNIAGEYEIPVI 211
Score = 25.2 bits (56), Expect = 3.0
Identities = 3/19 (15%), Positives = 12/19 (63%)
Query: 3 STEDVEKVVQVAHDHNLVV 21
+ +E+++ +A ++ + V
Sbjct: 192 DKKTLEEILNIAGEYEIPV 210
>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent
enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A
{Thermus thermophilus}
Length = 376
Score = 26.7 bits (60), Expect = 1.0
Identities = 5/18 (27%), Positives = 9/18 (50%)
Query: 40 EDVEKVVQVAHDHNLVII 57
E+ + +A H L +I
Sbjct: 178 GYFEEALGLARKHGLWLI 195
Score = 26.3 bits (59), Expect = 1.5
Identities = 5/19 (26%), Positives = 9/19 (47%)
Query: 5 EDVEKVVQVAHDHNLVVNH 23
E+ + +A H L + H
Sbjct: 178 GYFEEALGLARKHGLWLIH 196
>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate
aminotransferase, structural genomics, joint center for
structural genomics; HET: MSE LLP PE4; 1.75A
{Porphyromonas gingivalis}
Length = 437
Score = 26.5 bits (59), Expect = 1.3
Identities = 4/20 (20%), Positives = 14/20 (70%)
Query: 38 STEDVEKVVQVAHDHNLVII 57
+ E++ + ++A H++++I
Sbjct: 200 TDEELRIIGELATKHDVIVI 219
>2d7e_A Primosomal protein N'; inter-twined, hydrolase; 2.50A
{Escherichia coli} PDB: 2d7g_A* 2d7h_A* 2dwl_A 2dwm_A
2dwn_A*
Length = 105
Score = 25.6 bits (57), Expect = 1.7
Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 7/35 (20%)
Query: 55 VIIPFGGGTNVTGAV-------ACPENELRTIISL 82
V +PFG G V P NEL+ ++ +
Sbjct: 32 VRVPFGKQQERIGIVVSVSDASELPLNELKAVVEV 66
>3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal
5' phosphat external aldimine, chloroplast, pyridox
phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB:
3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A
3eia_A*
Length = 432
Score = 25.7 bits (57), Expect = 2.5
Identities = 4/18 (22%), Positives = 11/18 (61%)
Query: 40 EDVEKVVQVAHDHNLVII 57
E + ++V+ A + +I+
Sbjct: 218 EQLTQLVEFAKKNGSIIV 235
>3asa_A LL-diaminopimelate aminotransferase; PLP dependent
aminotransferase; 2.05A {Chlamydia trachomatis} PDB:
3asb_A*
Length = 400
Score = 25.6 bits (57), Expect = 2.5
Identities = 4/18 (22%), Positives = 11/18 (61%)
Query: 40 EDVEKVVQVAHDHNLVII 57
+ + +V A +H ++I+
Sbjct: 183 DQLRAIVHYAIEHEILIL 200
Score = 24.1 bits (53), Expect = 9.6
Identities = 3/19 (15%), Positives = 10/19 (52%)
Query: 5 EDVEKVVQVAHDHNLVVNH 23
+ + +V A +H +++
Sbjct: 183 DQLRAIVHYAIEHEILILF 201
>2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI
structure initiative, joint center for structural
genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP:
c.67.1.1
Length = 409
Score = 25.2 bits (56), Expect = 3.0
Identities = 5/20 (25%), Positives = 12/20 (60%)
Query: 38 STEDVEKVVQVAHDHNLVII 57
+++ +V++A H L +I
Sbjct: 192 GKDEMRYLVEIAERHGLFLI 211
>3nl4_L Antigen binding fragment, immunoglobulin IGG - LI; FAB, rabbit,
conformation-specific, amyloid, immune system; 1.54A
{Oryctolagus cuniculus}
Length = 213
Score = 25.2 bits (56), Expect = 3.1
Identities = 9/25 (36%), Positives = 10/25 (40%), Gaps = 2/25 (8%)
Query: 50 HDHNLVIIPFGGGTNVT--GAVACP 72
N + FGGGT V G P
Sbjct: 91 TYENPTYVSFGGGTEVGVKGDPVAP 115
>1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine
biosynthesis, transsulfurat lyase; HET: PLP; 2.30A
{Arabidopsis thaliana} SCOP: c.67.1.3
Length = 464
Score = 25.3 bits (56), Expect = 3.6
Identities = 4/17 (23%), Positives = 11/17 (64%)
Query: 41 DVEKVVQVAHDHNLVII 57
D+ K+ ++AH +++
Sbjct: 235 DIRKISEMAHAQGALVL 251
Score = 24.6 bits (54), Expect = 5.3
Identities = 5/16 (31%), Positives = 10/16 (62%)
Query: 6 DVEKVVQVAHDHNLVV 21
D+ K+ ++AH +V
Sbjct: 235 DIRKISEMAHAQGALV 250
>3r4c_A Hydrolase, haloacid dehalogenase-like hydrolase; haloalkanoate
dehalogenase enzyme superfamily, phosphohydrol
hydrolase; 1.82A {Bacteroides thetaiotaomicron}
Length = 268
Score = 24.8 bits (55), Expect = 4.3
Identities = 7/57 (12%), Positives = 19/57 (33%), Gaps = 4/57 (7%)
Query: 3 STEDVEKVVQVAHDHNLVVNHQAIFIGTRYWCITESTEDVEKVVQVAHDHNLVIIPF 59
+D K +++A + + V + T VE++ + ++
Sbjct: 93 PAQDFRKSMELAREFDFAVA----LELNEGVFVNRLTPTVEQIAGIVEHPVPPVVDI 145
>3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5'
phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A
{Chlamydomonas reinhardtii}
Length = 449
Score = 24.9 bits (55), Expect = 4.8
Identities = 2/20 (10%), Positives = 10/20 (50%)
Query: 38 STEDVEKVVQVAHDHNLVII 57
+ + ++V A + +++
Sbjct: 227 TRAQLTELVNFARKNGSILV 246
>1v2d_A Glutamine aminotransferase; PLP, riken structural
genomics/proteomics initi RSGI, structural genomics;
HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1
PDB: 1v2e_A* 1v2f_A*
Length = 381
Score = 24.4 bits (54), Expect = 5.3
Identities = 5/20 (25%), Positives = 12/20 (60%)
Query: 38 STEDVEKVVQVAHDHNLVII 57
++E + ++A H+L +I
Sbjct: 170 GERELEAIARLARAHDLFLI 189
>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent
enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A
{Escherichia coli} SCOP: c.67.1.3
Length = 386
Score = 24.8 bits (55), Expect = 5.3
Identities = 4/17 (23%), Positives = 9/17 (52%)
Query: 41 DVEKVVQVAHDHNLVII 57
D+ K+ +A + V +
Sbjct: 155 DIAKICHLAREVGAVSV 171
Score = 24.4 bits (54), Expect = 7.1
Identities = 4/16 (25%), Positives = 8/16 (50%)
Query: 6 DVEKVVQVAHDHNLVV 21
D+ K+ +A + V
Sbjct: 155 DIAKICHLAREVGAVS 170
>3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism
PLP-dependent enzyme family, CYST gamma lyase,
pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae
PV} PDB: 3e6g_A* 3nnp_A*
Length = 400
Score = 24.4 bits (54), Expect = 5.6
Identities = 4/17 (23%), Positives = 9/17 (52%)
Query: 41 DVEKVVQVAHDHNLVII 57
D+ + +A H L+ +
Sbjct: 170 DIAAIAVIARKHGLLTV 186
Score = 24.4 bits (54), Expect = 7.1
Identities = 4/16 (25%), Positives = 8/16 (50%)
Query: 6 DVEKVVQVAHDHNLVV 21
D+ + +A H L+
Sbjct: 170 DIAAIAVIARKHGLLT 185
>3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics,
seattle structural genomics center for infectious
disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A
{Mycobacterium ulcerans} PDB: 3qi6_A*
Length = 392
Score = 24.4 bits (54), Expect = 6.0
Identities = 3/17 (17%), Positives = 9/17 (52%)
Query: 41 DVEKVVQVAHDHNLVII 57
D+ + Q+ D + ++
Sbjct: 169 DIAGIAQLGADSSAKVL 185
Score = 24.4 bits (54), Expect = 6.9
Identities = 4/16 (25%), Positives = 8/16 (50%)
Query: 6 DVEKVVQVAHDHNLVV 21
D+ + Q+ D + V
Sbjct: 169 DIAGIAQLGADSSAKV 184
>3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba
histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A*
3aeo_A* 3aep_A*
Length = 389
Score = 24.4 bits (54), Expect = 6.3
Identities = 3/17 (17%), Positives = 9/17 (52%)
Query: 41 DVEKVVQVAHDHNLVII 57
D++ + V H+ ++
Sbjct: 162 DIKGIAVVCHERGARLV 178
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 24.5 bits (53), Expect = 7.3
Identities = 5/16 (31%), Positives = 6/16 (37%), Gaps = 1/16 (6%)
Query: 59 FG-GGTNVTGAVACPE 73
FG G V P+
Sbjct: 1445 FGFGQKGGQAIVVHPD 1460
>2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein
structure initiativ midwest center for structural
genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Length = 302
Score = 24.4 bits (54), Expect = 7.3
Identities = 9/38 (23%), Positives = 16/38 (42%), Gaps = 5/38 (13%)
Query: 35 ITESTEDVEKVVQVAHDHNLVIIPFGGGTNVTGAVACP 72
I +S E V++ A H + G ++ + CP
Sbjct: 119 IKDSLERFVPVLEAARQHQ---VRVRGY--ISCVLGCP 151
>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics
center for infectious disease, S mycobacterium, PLP,
schiff base; HET: LLP; 1.85A {Mycobacterium
tuberculosis}
Length = 414
Score = 24.1 bits (53), Expect = 7.4
Identities = 4/17 (23%), Positives = 9/17 (52%)
Query: 41 DVEKVVQVAHDHNLVII 57
D+ V ++AH ++
Sbjct: 184 DIAAVTELAHAAGAKVV 200
Score = 24.1 bits (53), Expect = 8.1
Identities = 5/16 (31%), Positives = 8/16 (50%)
Query: 6 DVEKVVQVAHDHNLVV 21
D+ V ++AH V
Sbjct: 184 DIAAVTELAHAAGAKV 199
>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent
enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB:
1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A*
Length = 398
Score = 24.0 bits (53), Expect = 7.4
Identities = 5/17 (29%), Positives = 10/17 (58%)
Query: 41 DVEKVVQVAHDHNLVII 57
D+E V +AH +++
Sbjct: 167 DIETVAGIAHQQGALLV 183
>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A
{Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A*
1ukj_A* 2o7c_A*
Length = 398
Score = 24.0 bits (53), Expect = 7.5
Identities = 4/17 (23%), Positives = 9/17 (52%)
Query: 41 DVEKVVQVAHDHNLVII 57
D+ V ++A H ++
Sbjct: 168 DIAGVAKIARKHGATVV 184
>3l0z_A Putative nicotinate-nucleotide-dimethylbenzimidaz
phosphoribosyltransferase; putative
nicotinate-nucleotide-dimethylbenzimidazole
phosphoribosyltransferase; 2.65A {Methanocaldococcus
jannaschii}
Length = 350
Score = 24.2 bits (52), Expect = 7.5
Identities = 8/48 (16%), Positives = 22/48 (45%)
Query: 13 VAHDHNLVVNHQAIFIGTRYWCITESTEDVEKVVQVAHDHNLVIIPFG 60
+ + V++ I IGT + + + D++ +V+ + ++ F
Sbjct: 249 IKEINKKVLDKNLIAIGTTEFVLNDKKGDLKGIVEQIGNVPVLASKFY 296
>1ta9_A Glycerol dehydrogenase; oxidoredu; 1.90A {Schizosaccharomyces
pombe}
Length = 450
Score = 24.0 bits (52), Expect = 8.0
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 38 STEDVEKVVQVAHDHNLVIIPFGGGT 63
S +++K+ + D VII GGG
Sbjct: 131 SLVELDKLRKQCPDDTQVIIGVGGGK 156
>2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase,
ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} PDB:
3mp3_A* 3mp4_A 3mp5_A*
Length = 298
Score = 24.0 bits (53), Expect = 8.3
Identities = 9/37 (24%), Positives = 17/37 (45%), Gaps = 9/37 (24%)
Query: 35 ITESTEDVEKVVQVAHDHNLVIIPFGGGTNVTGAVAC 71
I ES + + +++ A N+ +V G V+C
Sbjct: 116 IEESFQRFDAILKAAQSANI---------SVRGYVSC 143
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase,
structural genomics; HET: PLP; 2.40A {Archaeoglobus
fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Length = 371
Score = 23.9 bits (52), Expect = 8.5
Identities = 4/16 (25%), Positives = 12/16 (75%)
Query: 6 DVEKVVQVAHDHNLVV 21
DV+K+ +V ++++ +
Sbjct: 165 DVKKIAKVCSEYDVPL 180
>1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis,
pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A
{Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A*
1i43_A*
Length = 445
Score = 24.1 bits (53), Expect = 9.0
Identities = 4/17 (23%), Positives = 10/17 (58%)
Query: 41 DVEKVVQVAHDHNLVII 57
D+E V ++ H+ ++
Sbjct: 218 DIELVSKLCHEKGALVC 234
Score = 24.1 bits (53), Expect = 9.1
Identities = 5/16 (31%), Positives = 10/16 (62%)
Query: 6 DVEKVVQVAHDHNLVV 21
D+E V ++ H+ +V
Sbjct: 218 DIELVSKLCHEKGALV 233
>1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural
genomics, PSI, protein struct initiative; 2.30A
{Brucella melitensis}
Length = 295
Score = 24.0 bits (53), Expect = 9.0
Identities = 11/38 (28%), Positives = 16/38 (42%), Gaps = 5/38 (13%)
Query: 35 ITESTEDVEKVVQVAHDHNLVIIPFGGGTNVTGAVACP 72
I ES E + V+ A + + G V+ V CP
Sbjct: 115 IAESIERLSPVIGAAINDG---LAIRGY--VSCVVECP 147
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.131 0.386
Gapped
Lambda K H
0.267 0.0568 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,304,328
Number of extensions: 68291
Number of successful extensions: 500
Number of sequences better than 10.0: 1
Number of HSP's gapped: 499
Number of HSP's successfully gapped: 106
Length of query: 90
Length of database: 6,701,793
Length adjustment: 57
Effective length of query: 33
Effective length of database: 5,110,296
Effective search space: 168639768
Effective search space used: 168639768
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.8 bits)