RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4717
         (90 letters)



>d2i0ka2 d.145.1.1 (A:58-273) Cholesterol oxidase {Brevibacterium
          sterolicum [TaxId: 1702]}
          Length = 216

 Score = 38.5 bits (88), Expect = 2e-05
 Identities = 12/52 (23%), Positives = 21/52 (40%)

Query: 37 ESTEDVEKVVQVAHDHNLVIIPFGGGTNVTGAVACPENELRTIISLDTSQMQ 88
          ++ +DV ++   AH+H+  I P G     T         +  +I  DT    
Sbjct: 38 KTPQDVVRLANWAHEHDYKIRPRGAMAGWTPLTVEKGANVEKVILADTMTHL 89


>d1w1oa2 d.145.1.1 (A:40-245) Cytokinin dehydrogenase 1 {Maize
          (Zea mays) [TaxId: 4577]}
          Length = 206

 Score = 31.4 bits (70), Expect = 0.007
 Identities = 8/39 (20%), Positives = 14/39 (35%), Gaps = 3/39 (7%)

Query: 37 ESTEDVEKVVQVAHDHNLVIIPF---GGGTNVTGAVACP 72
           ST D+  ++  A+            G G ++ G    P
Sbjct: 37 SSTGDLVALLSAANSTPGWPYTIAFRGRGHSLMGQAFAP 75


>d1zxqa2 b.1.1.4 (A:1-86) Intercellular adhesion molecule-2,
          ICAM-2 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 86

 Score = 25.6 bits (56), Expect = 0.43
 Identities = 10/42 (23%), Positives = 17/42 (40%), Gaps = 3/42 (7%)

Query: 44 KVVQVAHDHNLVIIPFGGGTNVTGAVACPENELRTIISLDTS 85
          KV +V      + +   G   V  +  C + E   +  L+TS
Sbjct: 1  KVFEVHVRPKKLAVEPKGSLEVNCSTTCNQPE---VGGLETS 39


>d1umha_ b.18.1.21 (A:) F-box only protein 2 {Mouse (Mus musculus)
          [TaxId: 10090]}
          Length = 184

 Score = 25.2 bits (55), Expect = 1.2
 Identities = 9/46 (19%), Positives = 14/46 (30%), Gaps = 1/46 (2%)

Query: 18 NLVVNHQAIFIGTRYWCITESTEDVEKVVQVAHDHNLVIIPFGGGT 63
          NL+ N          W   E   D  KV ++  D+ +         
Sbjct: 13 NLLRNPCGE-EDLEGWSDVEHGGDGWKVEELPGDNGVEFTQDDSVK 57


>d1e6yb2 d.58.31.2 (B:2002-2185) Beta chain {Archaeon Methanosarcina
           barkeri [TaxId: 2208]}
          Length = 184

 Score = 24.7 bits (54), Expect = 1.8
 Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 12/47 (25%)

Query: 16  DHNLVVNHQAIFIGTRYWCITESTEDVEKVVQVAHDHNLVIIPFGGG 62
           ++++V N  AI             E+V+K+VQV    +  +I   GG
Sbjct: 71  NYDIVGNADAI------------AENVKKLVQVDEGDDTNVIKVKGG 105


>d1hbnb2 d.58.31.2 (B:2-188) Beta chain {Archaeon Methanobacterium
           thermoautotrophicum [TaxId: 145262]}
          Length = 187

 Score = 24.3 bits (53), Expect = 2.0
 Identities = 10/47 (21%), Positives = 20/47 (42%), Gaps = 12/47 (25%)

Query: 16  DHNLVVNHQAIFIGTRYWCITESTEDVEKVVQVAHDHNLVIIPFGGG 62
           D ++V N ++I                ++++QV  D +  +   GGG
Sbjct: 74  DLDIVGNAESI------------AAAAKEMIQVTEDDDTNVELLGGG 108


>d2ebfx2 c.150.1.2 (X:875-1093) Dermonecrotic toxin, ToxA
           {Pasteurella multocida [TaxId: 747]}
          Length = 219

 Score = 24.1 bits (52), Expect = 2.6
 Identities = 9/35 (25%), Positives = 13/35 (37%)

Query: 42  VEKVVQVAHDHNLVIIPFGGGTNVTGAVACPENEL 76
             K++Q A D+N+     G   N       P   L
Sbjct: 108 FRKLLQSAKDNNIKFRAIGHSDNSVPPFNNPYKSL 142


>d1e6vb2 d.58.31.2 (B:7-189) Beta chain {Archaeon Methanopyrus
           kandleri [TaxId: 2320]}
          Length = 183

 Score = 23.9 bits (52), Expect = 3.3
 Identities = 11/47 (23%), Positives = 22/47 (46%), Gaps = 12/47 (25%)

Query: 16  DHNLVVNHQAIFIGTRYWCITESTEDVEKVVQVAHDHNLVIIPFGGG 62
           D ++V N +AI             +++EK+++V  D +  + P   G
Sbjct: 70  DVDIVDNAEAI------------ADEIEKMIRVYQDDDTNVEPMYDG 104


>d1ygpa_ c.87.1.4 (A:) Glycogen phosphorylase {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 876

 Score = 23.8 bits (51), Expect = 3.5
 Identities = 10/51 (19%), Positives = 20/51 (39%), Gaps = 1/51 (1%)

Query: 11  VQVAHDHNLVVNHQAIFIGTRYWCITESTEDVEKVVQVAHDHNLVIIPFGG 61
           V+  H++          I  RY  +    ++   + +VA  +   +  FGG
Sbjct: 603 VKRIHEY-KRQQLNVFGIIYRYLAMKNMLKNGASIEEVARKYPRKVSIFGG 652


>d2rhea_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable
           domain, VL-lambda {Human (Homo sapiens), cluster 2
           [TaxId: 9606]}
          Length = 114

 Score = 22.8 bits (48), Expect = 6.5
 Identities = 10/27 (37%), Positives = 13/27 (48%)

Query: 40  EDVEKVVQVAHDHNLVIIPFGGGTNVT 66
           ED       A + +L    FGGGT +T
Sbjct: 82  EDEADYYCAAWNDSLDEPGFGGGTKLT 108


>d2byka1 a.22.1.3 (A:29-100) Chrac-16 {Fruit fly (Drosophila
          melanogaster) [TaxId: 7227]}
          Length = 72

 Score = 22.0 bits (47), Expect = 9.4
 Identities = 4/14 (28%), Positives = 6/14 (42%)

Query: 1  MKSTEDVEKVVQVA 14
          MKS+ D   +    
Sbjct: 1  MKSSMDTGLITNEV 14


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.131    0.386 

Gapped
Lambda     K      H
   0.267   0.0521    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 307,848
Number of extensions: 11452
Number of successful extensions: 101
Number of sequences better than 10.0: 1
Number of HSP's gapped: 101
Number of HSP's successfully gapped: 19
Length of query: 90
Length of database: 2,407,596
Length adjustment: 54
Effective length of query: 36
Effective length of database: 1,666,176
Effective search space: 59982336
Effective search space used: 59982336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.4 bits)