RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy472
(68 letters)
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast
activation protein alpha,fapalpha,
dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo
sapiens}
Length = 719
Score = 93.4 bits (232), Expect = 1e-24
Identities = 32/63 (50%), Positives = 44/63 (69%)
Query: 1 MGLPTFEDNLEGYKIAALNNKVDRIRDKQYLLVHGTMDDNVHFQQSMMLAKSLQHADIMF 60
MGLPT +DNLE YK + + + + R+ YLL+HGT DDNVHFQ S +AK+L +A + F
Sbjct: 627 MGLPTKDDNLEHYKNSTVMARAEYFRNVDYLLIHGTADDNVHFQNSAQIAKALVNAQVDF 686
Query: 61 QSQ 63
Q+
Sbjct: 687 QAM 689
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes,
novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A
{Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A*
2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A*
1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A*
3bjm_A* 3eio_A* ...
Length = 740
Score = 91.5 bits (227), Expect = 8e-24
Identities = 29/63 (46%), Positives = 44/63 (69%)
Query: 1 MGLPTFEDNLEGYKIAALNNKVDRIRDKQYLLVHGTMDDNVHFQQSMMLAKSLQHADIMF 60
MGLPT EDNL+ Y+ + + ++ + + +YLL+HGT DDNVHFQQS ++K+L + F
Sbjct: 633 MGLPTPEDNLDHYRNSTVMSRAENFKQVEYLLIHGTADDNVHFQQSAQISKALVDVGVDF 692
Query: 61 QSQ 63
Q+
Sbjct: 693 QAM 695
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase
6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG
NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1
c.69.1.24
Length = 723
Score = 87.2 bits (216), Expect = 2e-22
Identities = 15/63 (23%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 1 MGLPTFEDNLEGYKIAALNNKVDRIRDKQYLLVHGTMDDNVHFQQSMMLAKSLQHADIMF 60
+GL + Y++ + ++V + ++Q+L++H T D+ +HFQ + L L +
Sbjct: 631 LGLH--GLDNRAYEMTKVAHRVSALEEQQFLIIHPTADEKIHFQHTAELITQLIRGKANY 688
Query: 61 QSQ 63
Q
Sbjct: 689 SLQ 691
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase
family S9, hydrolase; 2.80A {Stenotrophomonas
maltophilia}
Length = 741
Score = 82.8 bits (205), Expect = 7e-21
Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Query: 1 MGLPTFEDNLEGYKIAALNNKVDRIRDKQYLLVHGTMDDNVHFQQSMMLAKSLQHADIMF 60
M LP N GY+ A + ++ +R LL+HG DDNV F S L +LQ F
Sbjct: 651 MDLP--ARNDAGYREARVLTHIEGLRSP-LLLIHGMADDNVLFTNSTSLMSALQKRGQPF 707
Query: 61 QSQ 63
+
Sbjct: 708 ELM 710
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl
oligopeptidase family, serine PR proline-specific
peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas
gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Length = 706
Score = 81.3 bits (201), Expect = 2e-20
Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Query: 1 MGLPTFEDNLEGYKIAALNNKVDRIRDKQYLLVHGTMDDNVHFQQSMMLAKSLQHADIMF 60
P ++N EGY A L + ++ + +L+HG +D V +Q S++ + A
Sbjct: 618 FDAP--QENPEGYDAANLLKRAGDLKGR-LMLIHGAIDPVVVWQHSLLFLDACVKARTYP 674
Query: 61 QSQ 63
Sbjct: 675 DYY 677
>3ksr_A Putative serine hydrolase; catalytic triad, structural genomics,
JOIN for structural genomics, JCSG; 2.69A {Xanthomonas
campestris PV}
Length = 290
Score = 35.6 bits (82), Expect = 3e-04
Identities = 7/26 (26%), Positives = 9/26 (34%)
Query: 31 LLVHGTMDDNVHFQQSMMLAKSLQHA 56
LLV D V A + +A
Sbjct: 180 LLVEAENDVIVPHPVMRNYADAFTNA 205
>3bjr_A Putative carboxylesterase; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; 2.09A {Lactobacillus plantarum WCFS1}
Length = 283
Score = 34.8 bits (80), Expect = 6e-04
Identities = 6/28 (21%), Positives = 10/28 (35%)
Query: 31 LLVHGTMDDNVHFQQSMMLAKSLQHADI 58
+ D V ++ A +L A I
Sbjct: 209 FIWTTADDPIVPATNTLAYATALATAKI 236
>3doh_A Esterase; alpha-beta hydrolase, beta sheet; 2.60A {Thermotoga
maritima} PDB: 3doi_A
Length = 380
Score = 34.3 bits (78), Expect = 0.001
Identities = 12/38 (31%), Positives = 18/38 (47%)
Query: 20 NKVDRIRDKQYLLVHGTMDDNVHFQQSMMLAKSLQHAD 57
+KV+RI+D + H D V + S +L K L
Sbjct: 301 SKVERIKDIPIWVFHAEDDPVVPVENSRVLVKKLAEIG 338
>3hxk_A Sugar hydrolase; alpha-beta protein., structural genomics, PSI-2,
protein structure initiative; 3.20A {Lactococcus lactis
subsp}
Length = 276
Score = 34.0 bits (78), Expect = 0.001
Identities = 5/28 (17%), Positives = 9/28 (32%)
Query: 31 LLVHGTMDDNVHFQQSMMLAKSLQHADI 58
+ H D+ V S+ L +
Sbjct: 192 FIWHTADDEGVPIYNSLKYCDRLSKHQV 219
>3bxp_A Putative lipase/esterase; putative carboxylesterase, structural
genomics, joint center structural genomics, JCSG; HET:
EPE; 1.70A {Lactobacillus plantarum WCFS1} PDB: 3d3n_A*
Length = 277
Score = 33.7 bits (77), Expect = 0.002
Identities = 3/28 (10%), Positives = 11/28 (39%)
Query: 31 LLVHGTMDDNVHFQQSMMLAKSLQHADI 58
+ D++V S+ +++ +
Sbjct: 195 FVWQTATDESVPPINSLKYVQAMLQHQV 222
>2wtm_A EST1E; hydrolase; 1.60A {Clostridium proteoclasticum} PDB: 2wtn_A*
Length = 251
Score = 32.7 bits (75), Expect = 0.004
Identities = 8/28 (28%), Positives = 17/28 (60%)
Query: 31 LLVHGTMDDNVHFQQSMMLAKSLQHADI 58
L+VHG D+ V ++ S+ +K ++ +
Sbjct: 193 LIVHGDQDEAVPYEASVAFSKQYKNCKL 220
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta
propeller, hydrolase, oligop SIZE selectivity; HET: GOL;
1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A*
1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Length = 582
Score = 31.3 bits (71), Expect = 0.012
Identities = 9/39 (23%), Positives = 14/39 (35%), Gaps = 1/39 (2%)
Query: 20 NKVDRIRDKQYLLVHGTMDDNVHFQQSMMLAKSLQHADI 58
N VDRI+ + L+H + + L L
Sbjct: 507 NHVDRIK-EPLALIHPQNASRTPLKPLLRLMGELLARGK 544
>3hlk_A Acyl-coenzyme A thioesterase 2, mitochondrial; alpha/beta
hydrolase, alternative splicing, hydrolase,
mitochondrion, polymorphism, serine esterase; 2.10A
{Homo sapiens}
Length = 446
Score = 30.9 bits (69), Expect = 0.015
Identities = 10/47 (21%), Positives = 15/47 (31%), Gaps = 2/47 (4%)
Query: 4 PTFEDNLEGYKIAALNNKVDRIRDKQYLLVHGTMDDNVHFQQSMMLA 50
LEG + V+R +L + G D N + A
Sbjct: 311 DVLNSPLEGPDQKSFI-PVERAEST-FLFLVGQDDHNWKSEFYANEA 355
>3fnb_A Acylaminoacyl peptidase SMU_737; alpha-beta-alpha sandwich, helix
bundle, structural genomics protein structure
initiative; HET: PGE; 2.12A {Streptococcus mutans}
Length = 405
Score = 30.8 bits (69), Expect = 0.018
Identities = 10/56 (17%), Positives = 21/56 (37%), Gaps = 1/56 (1%)
Query: 1 MGLPTFEDNLEGYKIAALNNKVDRIRDKQYLLVHGTMDDNVHFQQSMMLAKSLQHA 56
G F ++ A ++I L + G +D+ +QS +L + +
Sbjct: 308 FGQVDFITSVNEVLEQAQIVDYNKID-VPSLFLVGAGEDSELMRQSQVLYDNFKQR 362
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 30.6 bits (68), Expect = 0.024
Identities = 8/76 (10%), Positives = 20/76 (26%), Gaps = 24/76 (31%)
Query: 14 KIAALNNKVDRIRDKQYLLVHG---------------------TMDDNVHFQQSMMLAKS 52
L + +R + +L+ G MD + + + L
Sbjct: 136 PYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFW---LNLKNC 192
Query: 53 LQHADIMFQSQECYRR 68
++ Q+ +
Sbjct: 193 NSPETVLEMLQKLLYQ 208
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces
morookaensis} PDB: 3azp_A 3azq_A
Length = 662
Score = 30.6 bits (69), Expect = 0.025
Identities = 8/39 (20%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 20 NKVDRIRDKQYLLVHGTMDDNVHFQQSMMLAKSLQHADI 58
+ DR+R +LL+ G D +Q +++ +
Sbjct: 576 TRADRVR-VPFLLLQGLEDPVCPPEQCDRFLEAVAGCGV 613
>3llc_A Putative hydrolase; structural genomics, joint center for ST
genomics, JCSG, protein structure initiative, PSI-2;
HET: MSE PG4; 1.80A {Agrobacterium vitis}
Length = 270
Score = 30.1 bits (67), Expect = 0.031
Identities = 7/28 (25%), Positives = 15/28 (53%)
Query: 31 LLVHGTMDDNVHFQQSMMLAKSLQHADI 58
++ G D +V +Q ++ L + L D+
Sbjct: 210 HILQGMADPDVPYQHALKLVEHLPADDV 237
>1vkh_A Putative serine hydrolase; structural genomics, joint center
structural genomics, JCSG, protein structure initiative,
PS hydrolase; HET: MSE; 1.85A {Saccharomyces cerevisiae}
SCOP: c.69.1.32
Length = 273
Score = 29.6 bits (66), Expect = 0.053
Identities = 8/28 (28%), Positives = 13/28 (46%)
Query: 31 LLVHGTMDDNVHFQQSMMLAKSLQHADI 58
LVH D+ + +Q+ L LQ +
Sbjct: 216 HLVHSYSDELLTLRQTNCLISCLQDYQL 243
>3k2i_A Acyl-coenzyme A thioesterase 4; alpha/beta hydrolase fold
seven-stranded beta-sandwich, structural genomics,
structural genomics consortium, SGC; 2.40A {Homo
sapiens}
Length = 422
Score = 29.4 bits (65), Expect = 0.062
Identities = 8/48 (16%), Positives = 18/48 (37%), Gaps = 2/48 (4%)
Query: 3 LPTFEDNLEGYKIAALNNKVDRIRDKQYLLVHGTMDDNVHFQQSMMLA 50
+ + GYK ++ +++ + LL+ G D N +
Sbjct: 294 VDIRNALVGGYKNPSMI-PIEKAQGP-ILLIVGQDDHNWRSELYAQTV 339
>3pfb_A Cinnamoyl esterase; alpha/beta hydrolase fold, hydrolase,
cinnamoyl/Fe esterase, hydroxycinammates, extracellular;
HET: ZYC; 1.58A {Lactobacillus johnsonii} PDB: 3pf9_A*
3pfc_A* 3s2z_A* 3pf8_A 3qm1_A*
Length = 270
Score = 28.6 bits (64), Expect = 0.099
Identities = 8/28 (28%), Positives = 13/28 (46%)
Query: 31 LLVHGTMDDNVHFQQSMMLAKSLQHADI 58
L+HGT D V S + Q++ +
Sbjct: 211 CLIHGTDDTVVSPNASKKYDQIYQNSTL 238
>2h1i_A Carboxylesterase; structural genomics, PSI-2, protein struct
initiative, midwest center for structural genomics,
MCSG, H; HET: MSE; 2.80A {Bacillus cereus} SCOP:
c.69.1.14
Length = 226
Score = 28.3 bits (63), Expect = 0.13
Identities = 8/50 (16%), Positives = 17/50 (34%)
Query: 15 IAALNNKVDRIRDKQYLLVHGTMDDNVHFQQSMMLAKSLQHADIMFQSQE 64
+ ++ + K + GT D +S L L++A+
Sbjct: 154 VPRRGMQLANLAGKSVFIAAGTNDPICSSAESEELKVLLENANANVTMHW 203
>4e15_A Kynurenine formamidase; alpha/beta hydrolase fold,
hydrolase-hydrolase inhibitor COM; HET: SEB; 1.50A
{Drosophila melanogaster} PDB: 4e14_A* 4e11_A
Length = 303
Score = 28.0 bits (62), Expect = 0.15
Identities = 6/26 (23%), Positives = 9/26 (34%)
Query: 31 LLVHGTMDDNVHFQQSMMLAKSLQHA 56
+V D +QS A L+
Sbjct: 240 YVVAAEHDSTTFIEQSRHYADVLRKK 265
>1tht_A Thioesterase; 2.10A {Vibrio harveyi} SCOP: c.69.1.13
Length = 305
Score = 28.1 bits (62), Expect = 0.16
Identities = 6/57 (10%), Positives = 20/57 (35%), Gaps = 2/57 (3%)
Query: 6 FEDNLEGYKIAALNNKVDRIRDKQY--LLVHGTMDDNVHFQQSMMLAKSLQHADIMF 60
F + + L++ +D++ + + DD V ++ + ++
Sbjct: 177 FVRDCFEHHWDTLDSTLDKVANTSVPLIAFTANNDDWVKQEEVYDMLAHIRTGHCKL 233
>2jbw_A Dhpon-hydrolase, 2,6-dihydroxy-pseudo-oxynicotine hydrolase;
alpha/beta hydrolase, META-cleavage pathway; 2.1A
{Arthrobacter nicotinovorans} SCOP: c.69.1.41
Length = 386
Score = 28.0 bits (62), Expect = 0.17
Identities = 8/61 (13%), Positives = 20/61 (32%), Gaps = 3/61 (4%)
Query: 1 MGLPTFED-NLEGYKIAALNNKVDRIRDKQYLLVHGTMDDNVHFQQSMMLAKSLQHADIM 59
+ T E+ L + + + +I ++HG D V + + + +
Sbjct: 277 SKVDTLEEARLHVHAALETRDVLSQIA-CPTYILHGV-HDEVPLSFVDTVLELVPAEHLN 334
Query: 60 F 60
Sbjct: 335 L 335
>2r8b_A AGR_C_4453P, uncharacterized protein ATU2452; APC6088,
agrobacterium tumefaciens STR. C58 structural genomics,
PSI-2; 2.56A {Agrobacterium tumefaciens str} SCOP:
c.69.1.14
Length = 251
Score = 27.2 bits (60), Expect = 0.30
Identities = 7/34 (20%), Positives = 13/34 (38%)
Query: 23 DRIRDKQYLLVHGTMDDNVHFQQSMMLAKSLQHA 56
++ L+ G D Q + L +SL+
Sbjct: 184 PAKPTRRVLITAGERDPICPVQLTKALEESLKAQ 217
>3og9_A Protein YAHD A copper inducible hydrolase; alpha/beta hydrolase,
copper homeostasis, malic acid; 1.88A {Lactococcus
lactis subsp}
Length = 209
Score = 26.7 bits (59), Expect = 0.49
Identities = 8/42 (19%), Positives = 15/42 (35%)
Query: 23 DRIRDKQYLLVHGTMDDNVHFQQSMMLAKSLQHADIMFQSQE 64
++ DK L + D V + L L+ + + E
Sbjct: 145 VQLDDKHVFLSYAPNDMIVPQKNFGDLKGDLEDSGCQLEIYE 186
>2pbl_A Putative esterase/lipase/thioesterase; alpha/beta-hydrolases fold,
structural genomics, joint cente structural genomics,
JCSG; 1.79A {Silicibacter SP} SCOP: c.69.1.2
Length = 262
Score = 26.4 bits (58), Expect = 0.61
Identities = 4/39 (10%), Positives = 13/39 (33%), Gaps = 10/39 (25%)
Query: 31 LLVHGTMDDNVHFQQSMMLAKSLQ----------HADIM 59
+ G + Q++ L ++ H +++
Sbjct: 208 TVWVGGAERPAFLDQAIWLVEAWDADHVIAFEKHHFNVI 246
>3h04_A Uncharacterized protein; protein with unknown function, structural
genomics, MCSG, PS protein structure initiative; 1.90A
{Staphylococcus aureus subsp}
Length = 275
Score = 26.0 bits (57), Expect = 0.83
Identities = 7/52 (13%), Positives = 17/52 (32%), Gaps = 14/52 (26%)
Query: 31 LLVHGTMDDNVHFQQSMMLAKSL-----------QHADIMF---QSQECYRR 68
+ H D +V ++S + + +H ++ YR+
Sbjct: 213 FIAHCNGDYDVPVEESEHIMNHVPHSTFERVNKNEHDFDRRPNDEAITIYRK 264
>3fcy_A Xylan esterase 1; alpha/beta hydrolase, carbohydrate esterase, CE7;
2.10A {Thermoanaerobacterium SP}
Length = 346
Score = 25.2 bits (55), Expect = 1.6
Identities = 8/35 (22%), Positives = 12/35 (34%), Gaps = 1/35 (2%)
Query: 20 NKVDRIRDKQYLLVHGTMDDNVHFQQSMMLAKSLQ 54
N RI+ L+ G MD ++Q
Sbjct: 281 NLAKRIK-GDVLMCVGLMDQVCPPSTVFAAYNNIQ 314
>1sr3_A APO-CCME; OB fold, beta barrel, flexible C-terminal domain,
chaperone; NMR {Escherichia coli} SCOP: b.40.9.1
Length = 136
Score = 24.8 bits (54), Expect = 2.0
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 23 DRIRDKQYLLVHGTMDDNVHFQQSMMLAK 51
D R+ Q ++V G ++ H +LAK
Sbjct: 72 DLFREGQGVVVQGELEKGNHILAKEVLAK 100
>1wm1_A Proline iminopeptidase; complex with inhibitor, hydrolase; HET:
PTB; 2.10A {Serratia marcescens} SCOP: c.69.1.7 PDB:
1qtr_A* 1x2b_A* 1x2e_A*
Length = 317
Score = 24.7 bits (53), Expect = 2.5
Identities = 14/53 (26%), Positives = 20/53 (37%)
Query: 6 FEDNLEGYKIAALNNKVDRIRDKQYLLVHGTMDDNVHFQQSMMLAKSLQHADI 58
F L V IR ++VHG D Q + LAK+ A++
Sbjct: 236 FTHLGFLESDDQLLRNVPLIRHIPAVIVHGRYDMACQVQNAWDLAKAWPEAEL 288
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like,
hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8
d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Length = 301
Score = 24.7 bits (55), Expect = 2.7
Identities = 7/13 (53%), Positives = 10/13 (76%)
Query: 20 NKVDRIRDKQYLL 32
NKVD +++K LL
Sbjct: 124 NKVDNVQEKADLL 136
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA,
30S ribosome ASSE GTP-binding, nucleotide-binding; HET:
GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Length = 308
Score = 24.4 bits (54), Expect = 2.8
Identities = 5/13 (38%), Positives = 9/13 (69%)
Query: 20 NKVDRIRDKQYLL 32
NK+D+I + +L
Sbjct: 130 NKIDKIGPAKNVL 142
>1tqh_A Carboxylesterase precursor; tetrahedral intermediate, alpha/beta
hydrolase; 1.63A {Geobacillus stearothermophilus} SCOP:
c.69.1.29 PDB: 1r1d_A* 4diu_A
Length = 247
Score = 24.3 bits (53), Expect = 2.9
Identities = 2/27 (7%), Positives = 11/27 (40%)
Query: 31 LLVHGTMDDNVHFQQSMMLAKSLQHAD 57
+V D+ ++ + ++ ++
Sbjct: 186 FVVQARHDEMINPDSANIIYNEIESPV 212
>3trd_A Alpha/beta hydrolase; cellular processes; 1.50A {Coxiella burnetii}
Length = 208
Score = 24.6 bits (53), Expect = 3.0
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 31 LLVHGTMDDNVHFQQSMMLAKSLQH 55
L+V G D+ V F+Q +
Sbjct: 154 LIVQGDQDEVVPFEQVKAFVNQISS 178
>3mve_A FRSA, UPF0255 protein VV1_0328; FRSA,fermentation/respiration
switch protein, hydrolase ACTI lyase; 2.20A {Vibrio
vulnificus} PDB: 3our_A
Length = 415
Score = 24.6 bits (53), Expect = 3.3
Identities = 4/26 (15%), Positives = 9/26 (34%)
Query: 31 LLVHGTMDDNVHFQQSMMLAKSLQHA 56
L + D + + M+A +
Sbjct: 359 LAMSLEGDPVSPYSDNQMVAFFSTYG 384
>2qs9_A Retinoblastoma-binding protein 9; B5T overexpressed gene protein,
BOG, RBBP9, RBBP10, HR2978, NESG, structural genomics,
PSI-2; 1.72A {Homo sapiens}
Length = 194
Score = 24.3 bits (52), Expect = 3.4
Identities = 4/24 (16%), Positives = 11/24 (45%)
Query: 31 LLVHGTMDDNVHFQQSMMLAKSLQ 54
+ T D + +++ +A L+
Sbjct: 131 VQFGSTDDPFLPWKEQQEVADRLE 154
>3u0v_A Lysophospholipase-like protein 1; alpha, beta hydrolase fold,
hydrolase; 1.72A {Homo sapiens}
Length = 239
Score = 24.4 bits (53), Expect = 3.7
Identities = 6/34 (17%), Positives = 11/34 (32%)
Query: 31 LLVHGTMDDNVHFQQSMMLAKSLQHADIMFQSQE 64
HGT D+ V + L+ + +
Sbjct: 174 FQCHGTADELVLHSWAEETNSMLKSLGVTTKFHS 207
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 24.3 bits (52), Expect = 3.9
Identities = 2/8 (25%), Positives = 7/8 (87%)
Query: 26 RDKQYLLV 33
+ K++L++
Sbjct: 159 KGKKFLVI 166
>1auo_A Carboxylesterase; hydrolase; 1.80A {Pseudomonas fluorescens} SCOP:
c.69.1.14 PDB: 1aur_A*
Length = 218
Score = 23.9 bits (52), Expect = 4.0
Identities = 10/55 (18%), Positives = 15/55 (27%), Gaps = 2/55 (3%)
Query: 12 GY--KIAALNNKVDRIRDKQYLLVHGTMDDNVHFQQSMMLAKSLQHADIMFQSQE 64
Y + L +HG DD V + L+ + QE
Sbjct: 140 TYAPTFGDELELSASQQRIPALCLHGQYDDVVQNAMGRSAFEHLKSRGVTVTWQE 194
>3cn9_A Carboxylesterase; alpha/beta hydrolase fold super-family,
hydrolase; HET: 2PE; 2.09A {Pseudomonas aeruginosa} PDB:
3cn7_A*
Length = 226
Score = 23.9 bits (52), Expect = 4.3
Identities = 8/28 (28%), Positives = 12/28 (42%)
Query: 31 LLVHGTMDDNVHFQQSMMLAKSLQHADI 58
L +HG+ DD V +LQ +
Sbjct: 170 LHLHGSQDDVVDPALGRAAHDALQAQGV 197
>1fj2_A Protein (acyl protein thioesterase 1); alpha/beta hydrolase, serine
hydrolase, SAD, anomalous diffr hydrolase; 1.50A {Homo
sapiens} SCOP: c.69.1.14
Length = 232
Score = 24.0 bits (52), Expect = 4.5
Identities = 6/24 (25%), Positives = 9/24 (37%)
Query: 31 LLVHGTMDDNVHFQQSMMLAKSLQ 54
L HG D V + + L+
Sbjct: 169 LQCHGDCDPLVPLMFGSLTVEKLK 192
>3rm3_A MGLP, thermostable monoacylglycerol lipase; alpha/beta hydrolase
fold, hydrolase; 1.20A {Bacillus SP}
Length = 270
Score = 23.6 bits (51), Expect = 6.1
Identities = 8/43 (18%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 15 IAALNNKVDRIRDKQYLLVHGTMDDNVHFQQSMMLAKSLQHAD 57
+A K+DRI L+ D V + ++ + + +
Sbjct: 194 MAQTKAKLDRIV-CPALIFVSDEDHVVPPGNADIIFQGISSTE 235
>2ocg_A Valacyclovir hydrolase; alpha beta hydrolase fold; 1.75A {Homo
sapiens} PDB: 2oci_A* 2ock_A 2ocl_A
Length = 254
Score = 23.4 bits (51), Expect = 8.1
Identities = 7/26 (26%), Positives = 13/26 (50%)
Query: 31 LLVHGTMDDNVHFQQSMMLAKSLQHA 56
L+VHG D V + + K ++ +
Sbjct: 200 LIVHGEKDPLVPRFHADFIHKHVKGS 225
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.135 0.394
Gapped
Lambda K H
0.267 0.0586 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,000,778
Number of extensions: 43268
Number of successful extensions: 138
Number of sequences better than 10.0: 1
Number of HSP's gapped: 136
Number of HSP's successfully gapped: 46
Length of query: 68
Length of database: 6,701,793
Length adjustment: 38
Effective length of query: 30
Effective length of database: 5,640,795
Effective search space: 169223850
Effective search space used: 169223850
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 51 (23.7 bits)