RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy472
(68 letters)
>d2gzsa1 c.69.1.38 (A:41-305) Enterobactin and salmochelin hydrolase
IroE {Escherichia coli [TaxId: 562]}
Length = 265
Score = 32.7 bits (73), Expect = 0.002
Identities = 1/34 (2%), Positives = 6/34 (17%)
Query: 31 LLVHGTMDDNVHFQQSMMLAKSLQHADIMFQSQE 64
+ + L+ + +
Sbjct: 208 QGDNRETHAVGVLSKIHTTLTILKDKGVNAVFWD 241
>d1xfda2 c.69.1.24 (A:592-849) Dipeptidyl aminopeptidase-like
protein 6, DPP6, C-terminal domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 258
Score = 32.0 bits (71), Expect = 0.002
Identities = 12/51 (23%), Positives = 27/51 (52%)
Query: 11 EGYKIAALNNKVDRIRDKQYLLVHGTMDDNVHFQQSMMLAKSLQHADIMFQ 61
Y++ + ++V + ++Q+L++H T D+ +HFQ + L L +
Sbjct: 174 RAYEMTKVAHRVSALEEQQFLIIHPTADEKIHFQHTAELITQLIRGKANYS 224
>d2d81a1 c.69.1.37 (A:21-338) Polyhydroxybutyrate depolymerase
{Penicillium funiculosum [TaxId: 28572]}
Length = 318
Score = 31.9 bits (72), Expect = 0.003
Identities = 7/40 (17%), Positives = 13/40 (32%)
Query: 22 VDRIRDKQYLLVHGTMDDNVHFQQSMMLAKSLQHADIMFQ 61
V + ++ + G+ D V L L + D
Sbjct: 85 VANLGQRKIYMWTGSSDTTVGPNVMNQLKAQLGNFDNSAN 124
>d1vlqa_ c.69.1.25 (A:) Acetyl xylan esterase TM0077 {Thermotoga
maritima [TaxId: 2336]}
Length = 322
Score = 30.1 bits (66), Expect = 0.014
Identities = 4/24 (16%), Positives = 5/24 (20%)
Query: 31 LLVHGTMDDNVHFQQSMMLAKSLQ 54
L G MD+
Sbjct: 266 LFSVGLMDNICPPSTVFAAYNYYA 289
>d1l7aa_ c.69.1.25 (A:) Cephalosporin C deacetylase {Bacillus
subtilis [TaxId: 1423]}
Length = 318
Score = 29.7 bits (65), Expect = 0.016
Identities = 4/24 (16%), Positives = 7/24 (29%)
Query: 31 LLVHGTMDDNVHFQQSMMLAKSLQ 54
L+ G +D L+
Sbjct: 262 LMSIGLIDKVTPPSTVFAAYNHLE 285
>d2jbwa1 c.69.1.41 (A:8-367) 2,6-dihydropseudooxynicotine hydrolase
{Arthrobacter nicotinovorans [TaxId: 29320]}
Length = 360
Score = 29.5 bits (65), Expect = 0.021
Identities = 7/54 (12%), Positives = 17/54 (31%), Gaps = 2/54 (3%)
Query: 7 EDNLEGYKIAALNNKVDRIRDKQYLLVHGTMDDNVHFQQSMMLAKSLQHADIMF 60
E L + + + +I ++HG D V + + + +
Sbjct: 263 EARLHVHAALETRDVLSQIA-CPTYILHGV-HDEVPLSFVDTVLELVPAEHLNL 314
>d1qfma2 c.69.1.4 (A:431-710) Prolyl oligopeptidase, C-terminal
domain {Pig (Sus scrofa) [TaxId: 9823]}
Length = 280
Score = 28.6 bits (62), Expect = 0.047
Identities = 11/45 (24%), Positives = 18/45 (40%)
Query: 19 NNKVDRIRDKQYLLVHGTMDDNVHFQQSMMLAKSLQHADIMFQSQ 63
+ D I+ LL+ DD V S+ +LQ+ + Q
Sbjct: 192 LPEADDIQYPSMLLLTADHDDRVVPLHSLKFIATLQYIVGRSRKQ 236
>d1lnsa3 c.69.1.21 (A:146-550) X-Prolyl dipeptidyl aminopeptidase
PepX, middle domain {Lactococcus lactis [TaxId: 1358]}
Length = 405
Score = 27.2 bits (59), Expect = 0.14
Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Query: 8 DNLEGYKIAALNNKVDRIRDKQYLLVHGTMDDNVHFQQSMMLAKSLQ 54
D + + D+++ L+VHG D NV +Q+ K+L
Sbjct: 294 DYNQFWHDRNYLINTDKVKAD-VLIVHGLQDWNVTPEQAYNFWKALP 339
>d1vkha_ c.69.1.32 (A:) Putative serine hydrolase Ydr428c {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 263
Score = 26.4 bits (56), Expect = 0.26
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 31 LLVHGTMDDNVHFQQSMMLAKSLQHADIMFQ 61
LVH D+ + +Q+ L LQ + F+
Sbjct: 206 HLVHSYSDELLTLRQTNCLISCLQDYQLSFK 236
>d1sr3a_ b.40.9.1 (A:) Heme chaperone CcmE {Escherichia coli [TaxId:
562]}
Length = 114
Score = 26.0 bits (57), Expect = 0.27
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 23 DRIRDKQYLLVHGTMDDNVHFQQSMMLAK 51
D R+ Q ++V G ++ H +LAK
Sbjct: 72 DLFREGQGVVVQGELEKGNHILAKEVLAK 100
>d1j6qa_ b.40.9.1 (A:) Heme chaperone CcmE {Shewanella
putrefaciens [TaxId: 24]}
Length = 100
Score = 24.9 bits (54), Expect = 0.63
Identities = 7/29 (24%), Positives = 15/29 (51%)
Query: 23 DRIRDKQYLLVHGTMDDNVHFQQSMMLAK 51
D R+ Q ++ G + ++ + +LAK
Sbjct: 71 DLFREGQGIVAQGVLGEDGKLAATEVLAK 99
>d2pbla1 c.69.1.2 (A:1-261) Uncharacterized protein TM1040_2492
{Silicibacter sp. tm1040 [TaxId: 292414]}
Length = 261
Score = 23.8 bits (50), Expect = 2.1
Identities = 4/35 (11%), Positives = 13/35 (37%)
Query: 27 DKQYLLVHGTMDDNVHFQQSMMLAKSLQHADIMFQ 61
D + + G + Q++ L ++ ++
Sbjct: 203 DAKVTVWVGGAERPAFLDQAIWLVEAWDADHVIAF 237
>d3c8da2 c.69.1.2 (A:151-396) Enterochelin esterase, catalytic
domain {Shigella flexneri 2a str. 2457T [TaxId: 198215]}
Length = 246
Score = 23.0 bits (48), Expect = 4.0
Identities = 8/64 (12%), Positives = 17/64 (26%), Gaps = 1/64 (1%)
Query: 1 MGLPTFEDNLEGYKIAALNNKVDRIRDKQYLLVHGTMDDNVHFQQSMMLAKSLQHADIMF 60
P EG + L + +L G + + + + L L
Sbjct: 158 YWWPHRGGQQEGVLLEKLKAGEVSAEGLRIVLEAGIREPMIM-RANQALYAQLHPIKESI 216
Query: 61 QSQE 64
++
Sbjct: 217 FWRQ 220
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.135 0.394
Gapped
Lambda K H
0.267 0.0447 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 237,653
Number of extensions: 7730
Number of successful extensions: 28
Number of sequences better than 10.0: 1
Number of HSP's gapped: 28
Number of HSP's successfully gapped: 13
Length of query: 68
Length of database: 2,407,596
Length adjustment: 37
Effective length of query: 31
Effective length of database: 1,899,586
Effective search space: 58887166
Effective search space used: 58887166
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 47 (22.6 bits)