Query psy4720
Match_columns 95
No_of_seqs 143 out of 1022
Neff 7.6
Searched_HMMs 46136
Date Sat Aug 17 00:05:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4720.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4720hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0994|consensus 99.8 3.1E-19 6.8E-24 144.5 5.2 91 1-93 754-850 (1758)
2 KOG0994|consensus 99.8 4.2E-19 9.2E-24 143.7 5.3 90 3-94 804-895 (1758)
3 KOG3512|consensus 99.5 5.3E-14 1.1E-18 106.7 4.8 91 2-94 324-435 (592)
4 cd00055 EGF_Lam Laminin-type e 99.2 2.9E-11 6.4E-16 66.6 4.3 43 11-53 1-43 (50)
5 KOG1836|consensus 99.2 3.4E-11 7.3E-16 102.3 6.4 86 6-93 936-1027(1705)
6 smart00180 EGF_Lam Laminin-typ 99.1 5.9E-11 1.3E-15 64.4 4.0 40 12-51 1-40 (46)
7 PF00053 Laminin_EGF: Laminin 99.1 3.2E-11 6.9E-16 66.0 2.2 43 12-54 1-43 (49)
8 KOG1836|consensus 99.0 5.4E-10 1.2E-14 95.2 6.9 87 5-93 884-979 (1705)
9 KOG3512|consensus 98.6 1.2E-08 2.6E-13 78.0 1.9 48 5-52 390-437 (592)
10 KOG4289|consensus 98.5 1.9E-07 4.2E-12 78.7 5.2 74 6-93 1767-1843(2531)
11 KOG4289|consensus 98.5 2.7E-07 5.9E-12 77.9 5.7 64 29-92 1739-1811(2531)
12 cd00055 EGF_Lam Laminin-type e 98.4 5E-07 1.1E-11 49.5 3.2 36 57-94 1-40 (50)
13 smart00180 EGF_Lam Laminin-typ 98.2 2.1E-06 4.6E-11 46.3 3.1 29 64-94 11-39 (46)
14 PF00053 Laminin_EGF: Laminin 98.1 8E-07 1.7E-11 48.3 0.5 34 58-93 1-38 (49)
15 KOG1388|consensus 98.1 1.7E-06 3.7E-11 60.3 2.1 84 3-91 43-130 (217)
16 KOG1225|consensus 97.4 0.0005 1.1E-08 53.8 6.7 57 27-88 263-342 (525)
17 smart00051 DSL delta serrate l 96.4 0.0052 1.1E-07 35.2 3.5 39 45-86 21-63 (63)
18 PF12661 hEGF: Human growth fa 96.0 0.0047 1E-07 24.8 1.2 13 30-42 1-13 (13)
19 PF07974 EGF_2: EGF-like domai 95.8 0.01 2.2E-07 29.6 2.4 25 14-42 8-32 (32)
20 smart00051 DSL delta serrate l 95.5 0.02 4.3E-07 32.8 3.1 38 4-42 25-63 (63)
21 KOG4260|consensus 95.0 0.022 4.7E-07 41.7 2.7 52 33-93 132-188 (350)
22 PF07974 EGF_2: EGF-like domai 94.6 0.03 6.5E-07 27.8 1.8 25 60-86 8-32 (32)
23 KOG4260|consensus 94.2 0.039 8.5E-07 40.4 2.5 49 4-52 136-191 (350)
24 KOG1226|consensus 93.5 0.14 3E-06 41.9 4.6 15 29-43 478-492 (783)
25 KOG1225|consensus 93.1 0.28 6E-06 38.8 5.6 53 27-85 294-365 (525)
26 KOG3509|consensus 89.8 0.62 1.3E-05 39.3 4.7 87 4-94 746-848 (964)
27 KOG3509|consensus 86.1 0.8 1.7E-05 38.7 3.1 70 24-94 713-790 (964)
28 KOG1226|consensus 86.0 1.1 2.4E-05 36.9 3.8 15 29-43 566-580 (783)
29 KOG1219|consensus 82.1 2.4 5.2E-05 39.6 4.4 34 7-44 3865-3901(4289)
30 KOG1218|consensus 80.4 9.2 0.0002 27.2 6.4 48 24-77 157-205 (316)
31 cd00054 EGF_CA Calcium-binding 79.3 3.4 7.4E-05 19.5 2.8 13 30-42 25-37 (38)
32 smart00179 EGF_CA Calcium-bind 73.3 5.9 0.00013 19.0 2.8 13 30-42 25-38 (39)
33 PF01414 DSL: Delta serrate li 71.3 1.3 2.8E-05 25.3 -0.0 45 30-86 18-63 (63)
34 KOG1218|consensus 70.5 12 0.00026 26.5 4.8 53 30-88 125-177 (316)
35 KOG1219|consensus 69.1 7.2 0.00016 36.9 3.9 58 23-87 3916-3977(4289)
36 PF00008 EGF: EGF-like domain 69.1 3.3 7.1E-05 20.1 1.2 13 29-41 20-32 (32)
37 KOG0196|consensus 66.2 7.8 0.00017 32.7 3.4 34 28-61 258-299 (996)
38 KOG1388|consensus 65.6 2.4 5.2E-05 30.0 0.4 37 7-46 92-129 (217)
39 smart00181 EGF Epidermal growt 62.0 6.3 0.00014 18.7 1.5 14 29-42 20-34 (35)
40 cd00053 EGF Epidermal growth f 59.7 7.4 0.00016 17.9 1.5 12 29-40 21-32 (36)
41 PHA02887 EGF-like protein; Pro 58.2 8.7 0.00019 24.8 1.9 17 28-44 107-123 (126)
42 PF09064 Tme5_EGF_like: Thromb 46.8 14 0.00031 18.6 1.2 16 23-38 11-27 (34)
43 PF07699 GCC2_GCC3: GCC2 and G 43.7 20 0.00043 18.7 1.7 13 40-52 9-21 (48)
44 PHA03099 epidermal growth fact 43.0 19 0.0004 23.7 1.7 18 27-44 65-82 (139)
45 PF12947 EGF_3: EGF domain; I 37.0 17 0.00037 18.2 0.7 12 29-40 21-32 (36)
46 cd00185 TNFR Tumor necrosis fa 31.6 91 0.002 18.7 3.4 13 40-52 33-45 (98)
47 KOG1214|consensus 29.2 52 0.0011 28.3 2.5 50 28-77 796-854 (1289)
48 PF12714 TILa: TILa domain 24.9 55 0.0012 17.8 1.4 14 5-18 17-31 (56)
49 PF12662 cEGF: Complement Clr- 23.1 53 0.0012 15.0 1.0 9 30-38 3-11 (24)
50 PHA02637 TNF-alpha-receptor-li 22.1 1E+02 0.0022 20.1 2.5 12 40-51 63-74 (127)
51 PF14446 Prok-RING_1: Prokaryo 21.7 59 0.0013 18.0 1.1 40 36-75 2-44 (54)
No 1
>KOG0994|consensus
Probab=99.77 E-value=3.1e-19 Score=144.47 Aligned_cols=91 Identities=40% Similarity=0.803 Sum_probs=85.7
Q ss_pred CCccCCCCCccCCCCCCCCCCCccccCCceeecCCCccCCCCCCCCCCccCCC--CceeccCCCC----CCCCCCCCcee
Q psy4720 1 MTISFLHEALPCQCDIDGSKSFECEQFGGQCQCKPNVIGRRCEMCATGYYGFP--DCHPCNCPFT----AVCDSYTGKLA 74 (95)
Q Consensus 1 ~~~~~~~~C~~C~C~~~gs~~~~C~~~~G~C~C~~g~~G~~C~~C~~G~~g~~--~C~~C~C~~~----~~C~~~tG~C~ 74 (95)
|+|+.+++=..|+|++.||+++.|++..|+|.|||++.|++|++|+||+|||. +|++|+|+.. ..||.+||||.
T Consensus 754 lsa~l~n~a~~CnCnptGSlS~vCn~~GGqCqCkPnVVGR~CdqCApGtyGFGPsGCk~CdC~~~Gs~~~~Cd~~tGQC~ 833 (1758)
T KOG0994|consen 754 LSALLHNGASMCNCNPTGSLSSVCNPNGGQCQCKPNVVGRRCDQCAPGTYGFGPSGCKACDCNSIGSLDKYCDKITGQCQ 833 (1758)
T ss_pred HHHHHhcCccccccCCCccccccccCCCceecccCccccccccccCCcccCcCCccCcccccccccccccccccccccee
Confidence 67888999999999999999999999999999999999999999999999985 8999999975 47999999999
Q ss_pred ccCCCccccCCCCcCCCCC
Q psy4720 75 QVLIQVVTFPNYPSCKLWY 93 (95)
Q Consensus 75 c~~~~~~~~~~c~~c~~~~ 93 (95)
|.. ++-|..|++|++||
T Consensus 834 C~~--g~ygrqCnqCqpG~ 850 (1758)
T KOG0994|consen 834 CRP--GTYGRQCNQCQPGY 850 (1758)
T ss_pred ecc--ccchhhccccCCCc
Confidence 988 89999999999998
No 2
>KOG0994|consensus
Probab=99.76 E-value=4.2e-19 Score=143.74 Aligned_cols=90 Identities=34% Similarity=0.729 Sum_probs=84.1
Q ss_pred ccCCCCCccCCCCCCCCCCCccccCCceeecCCCccCCCCCCCCCCccCCCCceeccCCCC-CCCCCCCCcee-ccCCCc
Q psy4720 3 ISFLHEALPCQCDIDGSKSFECEQFGGQCQCKPNVIGRRCEMCATGYYGFPDCHPCNCPFT-AVCDSYTGKLA-QVLIQV 80 (95)
Q Consensus 3 ~~~~~~C~~C~C~~~gs~~~~C~~~~G~C~C~~g~~G~~C~~C~~G~~g~~~C~~C~C~~~-~~C~~~tG~C~-c~~~~~ 80 (95)
+|.+.+|++|+|+..|+++..|+.++|+|.|++|+.|+.|++|.|||||||.|++|+|+.+ ..||+.||.|+ |.. .
T Consensus 804 GFGPsGCk~CdC~~~Gs~~~~Cd~~tGQC~C~~g~ygrqCnqCqpG~WgFPeCr~CqCNgHA~~Cd~~tGaCi~CqD--~ 881 (1758)
T KOG0994|consen 804 GFGPSGCKACDCNSIGSLDKYCDKITGQCQCRPGTYGRQCNQCQPGYWGFPECRPCQCNGHADTCDPITGACIDCQD--S 881 (1758)
T ss_pred CcCCccCccccccccccccccccccccceeeccccchhhccccCCCccCCCcCccccccCcccccCccccccccccc--c
Confidence 5778999999999999999999999999999999999999999999999999999999998 58999999998 454 7
Q ss_pred cccCCCCcCCCCCC
Q psy4720 81 VTFPNYPSCKLWYN 94 (95)
Q Consensus 81 ~~~~~c~~c~~~~~ 94 (95)
.+|.+|++|..||-
T Consensus 882 T~G~~CdrCl~Gyy 895 (1758)
T KOG0994|consen 882 TTGHSCDRCLDGYY 895 (1758)
T ss_pred ccccchhhhhcccc
Confidence 89999999999983
No 3
>KOG3512|consensus
Probab=99.47 E-value=5.3e-14 Score=106.70 Aligned_cols=91 Identities=30% Similarity=0.616 Sum_probs=76.6
Q ss_pred CccCCCCCccCCCCCCCCCCC---cc-----ccCCcee-ecCCCccCCCCCCCCCCccCCC--------CceeccCCCC-
Q psy4720 2 TISFLHEALPCQCDIDGSKSF---EC-----EQFGGQC-QCKPNVIGRRCEMCATGYYGFP--------DCHPCNCPFT- 63 (95)
Q Consensus 2 ~~~~~~~C~~C~C~~~gs~~~---~C-----~~~~G~C-~C~~g~~G~~C~~C~~G~~g~~--------~C~~C~C~~~- 63 (95)
+++..+.|.+|+|+++++.-. .+ ....|.| .|++++.|++|..|.+|||.++ .|+.|+|++.
T Consensus 324 T~~~a~~c~ac~Cn~harrcrfn~Ely~lSgr~SggvClnCrHnTaGrhChyCreGyyRd~s~pl~hrkaCk~CdChpVG 403 (592)
T KOG3512|consen 324 TALPANECVACNCNGHARRCRFNMELYRLSGRRSGGVCLNCRHNTAGRHCHYCREGYYRDGSKPLTHRKACKACDCHPVG 403 (592)
T ss_pred ccCCCccccccccchhhhhcccchhhhcccCccccceEeecccCCCCcccccccCccccCCCCCCchhhhhhhcCCcccc
Confidence 678889999999999987310 01 1224688 6999999999999999999865 5899999985
Q ss_pred ---CCCCCCCCceeccCCCccccCCCCcCCCCCC
Q psy4720 64 ---AVCDSYTGKLAQVLIQVVTFPNYPSCKLWYN 94 (95)
Q Consensus 64 ---~~C~~~tG~C~c~~~~~~~~~~c~~c~~~~~ 94 (95)
..|+..||||+|+. +|+|..|++|.++|.
T Consensus 404 s~gktCNq~tGqCpCke--GvtG~tCnrCa~gyq 435 (592)
T KOG3512|consen 404 SAGKTCNQTTGQCPCKE--GVTGLTCNRCAPGYQ 435 (592)
T ss_pred cccccccccCCcccCCC--CCcccccccccchhh
Confidence 47999999999999 999999999999983
No 4
>cd00055 EGF_Lam Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in tandem arrays; the domain contains 4 disulfide bonds (loops a-d) the first three resemble epidermal growth factor (EGF); the number of copies of this domain in the different forms of laminins is highly variable ranging from 3 up to 22 copies
Probab=99.20 E-value=2.9e-11 Score=66.55 Aligned_cols=43 Identities=58% Similarity=1.328 Sum_probs=40.4
Q ss_pred cCCCCCCCCCCCccccCCceeecCCCccCCCCCCCCCCccCCC
Q psy4720 11 PCQCDIDGSKSFECEQFGGQCQCKPNVIGRRCEMCATGYYGFP 53 (95)
Q Consensus 11 ~C~C~~~gs~~~~C~~~~G~C~C~~g~~G~~C~~C~~G~~g~~ 53 (95)
+|.|++.+++...|++.+|+|.|+++++|++|++|++|||+++
T Consensus 1 ~C~C~~~g~~~~~C~~~~G~C~C~~~~~G~~C~~C~~g~~~~~ 43 (50)
T cd00055 1 PCDCNGHGSLSGQCDPGTGQCECKPNTTGRRCDRCAPGYYGLP 43 (50)
T ss_pred CCcCcCCCCCCccccCCCCEEeCCCcCCCCCCCCCCCCCccCC
Confidence 4889999998888999999999999999999999999999976
No 5
>KOG1836|consensus
Probab=99.19 E-value=3.4e-11 Score=102.34 Aligned_cols=86 Identities=33% Similarity=0.693 Sum_probs=80.4
Q ss_pred CCCCccCCCCCCCCCCCccccCCceeecCCCccCCCCCCCCCCccCCC--CceeccCCCCC----CCCCCCCceeccCCC
Q psy4720 6 LHEALPCQCDIDGSKSFECEQFGGQCQCKPNVIGRRCEMCATGYYGFP--DCHPCNCPFTA----VCDSYTGKLAQVLIQ 79 (95)
Q Consensus 6 ~~~C~~C~C~~~gs~~~~C~~~~G~C~C~~g~~G~~C~~C~~G~~g~~--~C~~C~C~~~~----~C~~~tG~C~c~~~~ 79 (95)
..+|.+|+|++.|++...|+..+|+|.|+++++|.+|++|.+++|++. .|++|.|.+.+ .|++.+|+|+|+.
T Consensus 936 ~~gC~~c~c~~~gs~~~~c~~~tGqc~c~~gVtgqrc~qc~~~~~~~~~~gc~~c~c~~~Gs~~~qc~~~~G~c~c~~-- 1013 (1705)
T KOG1836|consen 936 GVGCEPCNCDPTGSESSDCDVGTGQCYCRPGVTGQRCDQCETYHFGFQTEGCGLCECDPLGSRGFQCDPEDGQCPCRP-- 1013 (1705)
T ss_pred CCCcccccccccccccccccccCCceeeecCccccccCccccCcccccccCCcceecccCCcccceecccCCeeeecC--
Confidence 458999999999999999999999999999999999999999999986 79999999875 5999999999999
Q ss_pred ccccCCCCcCCCCC
Q psy4720 80 VVTFPNYPSCKLWY 93 (95)
Q Consensus 80 ~~~~~~c~~c~~~~ 93 (95)
+++|..|+.|+.++
T Consensus 1014 ~~~g~~c~~c~~~~ 1027 (1705)
T KOG1836|consen 1014 GFEGRRCDQCEEGF 1027 (1705)
T ss_pred CCCCcccccccCCc
Confidence 99999999998876
No 6
>smart00180 EGF_Lam Laminin-type epidermal growth factor-like domai.
Probab=99.15 E-value=5.9e-11 Score=64.38 Aligned_cols=40 Identities=63% Similarity=1.352 Sum_probs=37.5
Q ss_pred CCCCCCCCCCCccccCCceeecCCCccCCCCCCCCCCccC
Q psy4720 12 CQCDIDGSKSFECEQFGGQCQCKPNVIGRRCEMCATGYYG 51 (95)
Q Consensus 12 C~C~~~gs~~~~C~~~~G~C~C~~g~~G~~C~~C~~G~~g 51 (95)
|+|++.|++...|++.+|+|.|+++++|++|++|++||||
T Consensus 1 C~C~~~G~~~~~C~~~~G~C~C~~~~~G~~C~~C~~g~~g 40 (46)
T smart00180 1 CDCDPGGSASGTCDPDTGQCECKPNVTGRRCDRCAPGYYG 40 (46)
T ss_pred CcCCCCCCCCCcccCCCCEEECCCCCCCCCCCcCCCCcCC
Confidence 6788888887789999999999999999999999999998
No 7
>PF00053 Laminin_EGF: Laminin EGF-like (Domains III and V); InterPro: IPR002049 Laminins [] are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation. They are composed of distinct but related alpha, beta and gamma chains. The three chains form a cross-shaped molecule that consist of a long arm and three short globular arms. The long arm consist of a coiled coil structure contributed by all three chains and cross-linked by interchain disulphide bonds. Beside different types of globular domains each subunit contains, in its first half, consecutive repeats of about 60 amino acids in length that include eight conserved cysteines []. The tertiary structure [, ] of this domain is remotely similar in its N-terminal to that of the EGF-like module (see PDOC00021 from PROSITEDOC). It is known as a 'LE' or 'laminin-type EGF-like' domain. The number of copies of the LE domain in the different forms of laminins is highly variable; from 3 up to 22 copies have been found. A schematic representation of the topology of the four disulphide bonds in the LE domain is shown below. +-------------------+ +-|-----------+ | +--------+ +-----------------+ | | | | | | | | xxCxCxxxxxxxxxxxCxxxxxxxCxxCxxxxxGxxCxxCxxgaagxxxxxxxxxxxCxx sssssssssssssssssssssssssssssssssss 'C': conserved cysteine involved in a disulphide bond 'a': conserved aromatic residue 'G': conserved glycine (lower case = less conserved) 's': region similar to the EGF-like domain In mouse laminin gamma-1 chain, the seventh LE domain has been shown to be the only one that binds with a high affinity to nidogen []. The binding-sites are located on the surface within the loops C1-C3 and C5-C6 [, ]. Long consecutive arrays of LE domains in laminins form rod-like elements of limited flexibility [], which determine the spacing in the formation of laminin networks of basement membranes [].; PDB: 3TBD_A 3ZYG_B 3ZYI_B 2Y38_A 1KLO_A 1NPE_B 3ZYJ_B 1TLE_A.
Probab=99.12 E-value=3.2e-11 Score=66.02 Aligned_cols=43 Identities=47% Similarity=1.198 Sum_probs=38.0
Q ss_pred CCCCCCCCCCCccccCCceeecCCCccCCCCCCCCCCccCCCC
Q psy4720 12 CQCDIDGSKSFECEQFGGQCQCKPNVIGRRCEMCATGYYGFPD 54 (95)
Q Consensus 12 C~C~~~gs~~~~C~~~~G~C~C~~g~~G~~C~~C~~G~~g~~~ 54 (95)
|+|++.++....|++.+|+|.|+++|+|++|++|++|||+++.
T Consensus 1 C~C~~~~~~~~~C~~~~G~C~C~~~~~G~~C~~C~~g~~~~~~ 43 (49)
T PF00053_consen 1 CDCNPHGSSSQTCDPSTGQCVCKPGTTGPRCDQCKPGYFGLPS 43 (49)
T ss_dssp ESSTTCCBCCSSEEETCEEESBSTTEESTTS-EE-TTEECSTT
T ss_pred CcCcCCCCCCCcccCCCCEEeccccccCCcCcCCCCccccccC
Confidence 6789999888899999999999999999999999999999864
No 8
>KOG1836|consensus
Probab=99.03 E-value=5.4e-10 Score=95.18 Aligned_cols=87 Identities=36% Similarity=0.748 Sum_probs=79.6
Q ss_pred CCCCCccCCCCCCCCCC--CccccCCceeecCCCccCCCCCCCCCCccCCC---CceeccCCCC----CCCCCCCCceec
Q psy4720 5 FLHEALPCQCDIDGSKS--FECEQFGGQCQCKPNVIGRRCEMCATGYYGFP---DCHPCNCPFT----AVCDSYTGKLAQ 75 (95)
Q Consensus 5 ~~~~C~~C~C~~~gs~~--~~C~~~~G~C~C~~g~~G~~C~~C~~G~~g~~---~C~~C~C~~~----~~C~~~tG~C~c 75 (95)
..+.|.+|.|++.|++. ..|++.+|+|.|++++.|..|..|.+|||++. .|.+|+|+.. ..|+..||||.|
T Consensus 884 p~~~c~~c~c~p~gs~~~~~~c~~~tGQcec~~~v~g~~c~~c~~g~fnl~s~~gC~~c~c~~~gs~~~~c~~~tGqc~c 963 (1705)
T KOG1836|consen 884 PEDKCFACGCVPAGSELPSLTCNPVTGQCECKPNVEGRDCLYCFKGFFNLNSGVGCEPCNCDPTGSESSDCDVGTGQCYC 963 (1705)
T ss_pred cCCccccccCccCCcccccccCCCcccceeccCCCCccccccccccccccCCCCCcccccccccccccccccccCCceee
Confidence 35679999999999985 67999999999999999999999999999987 8999999974 479999999999
Q ss_pred cCCCccccCCCCcCCCCC
Q psy4720 76 VLIQVVTFPNYPSCKLWY 93 (95)
Q Consensus 76 ~~~~~~~~~~c~~c~~~~ 93 (95)
++ +|+|.+|++|..++
T Consensus 964 ~~--gVtgqrc~qc~~~~ 979 (1705)
T KOG1836|consen 964 RP--GVTGQRCDQCETYH 979 (1705)
T ss_pred ec--CccccccCccccCc
Confidence 99 99999999999874
No 9
>KOG3512|consensus
Probab=98.64 E-value=1.2e-08 Score=78.01 Aligned_cols=48 Identities=38% Similarity=0.755 Sum_probs=45.0
Q ss_pred CCCCCccCCCCCCCCCCCccccCCceeecCCCccCCCCCCCCCCccCC
Q psy4720 5 FLHEALPCQCDIDGSKSFECEQFGGQCQCKPNVIGRRCEMCATGYYGF 52 (95)
Q Consensus 5 ~~~~C~~C~C~~~gs~~~~C~~~~G~C~C~~g~~G~~C~~C~~G~~g~ 52 (95)
.-+.|+.|+|++.|++...|+..+|+|.|++|++|..|++|++||+..
T Consensus 390 hrkaCk~CdChpVGs~gktCNq~tGqCpCkeGvtG~tCnrCa~gyqqs 437 (592)
T KOG3512|consen 390 HRKACKACDCHPVGSAGKTCNQTTGQCPCKEGVTGLTCNRCAPGYQQS 437 (592)
T ss_pred hhhhhhhcCCcccccccccccccCCcccCCCCCcccccccccchhhcc
Confidence 356799999999999999999999999999999999999999999974
No 10
>KOG4289|consensus
Probab=98.49 E-value=1.9e-07 Score=78.72 Aligned_cols=74 Identities=27% Similarity=0.578 Sum_probs=62.2
Q ss_pred CCCCccCCCCCCCCCCCccccCCceeecCCCccCCCCCCCCCCccCCCCceeccCCCC---CCCCCCCCceeccCCCccc
Q psy4720 6 LHEALPCQCDIDGSKSFECEQFGGQCQCKPNVIGRRCEMCATGYYGFPDCHPCNCPFT---AVCDSYTGKLAQVLIQVVT 82 (95)
Q Consensus 6 ~~~C~~C~C~~~gs~~~~C~~~~G~C~C~~g~~G~~C~~C~~G~~g~~~C~~C~C~~~---~~C~~~tG~C~c~~~~~~~ 82 (95)
+..|.+|+|......+..|+..+|+|.||+++.-+. ..|.+|+|..+ ..|+ .+|||.|++ ++.
T Consensus 1767 ~P~CgpC~CavsKgfdp~CnKt~G~CqCKe~hy~~~-----------~~Cl~CdC~~Gs~Sr~C~-adGqC~C~p--gai 1832 (2531)
T KOG4289|consen 1767 FPTCGPCNCAVSKGFDPDCNKTNGQCQCKENHYRPI-----------GSCLPCDCYFGSDSRECD-ADGQCPCKP--GAI 1832 (2531)
T ss_pred CCCccCccccccCCCCCCccccCcceeeccccccCC-----------CcceeeccccCCCccccc-CCCcCCCCC--ccc
Confidence 678999999988888889999999999998865321 25999999864 4799 899999999 999
Q ss_pred cCCCCcCCCCC
Q psy4720 83 FPNYPSCKLWY 93 (95)
Q Consensus 83 ~~~c~~c~~~~ 93 (95)
|.+|++|..-|
T Consensus 1833 GRqCdrCd~pf 1843 (2531)
T KOG4289|consen 1833 GRQCDRCDNPF 1843 (2531)
T ss_pred cccccccCChh
Confidence 99999997543
No 11
>KOG4289|consensus
Probab=98.47 E-value=2.7e-07 Score=77.87 Aligned_cols=64 Identities=30% Similarity=0.803 Sum_probs=52.4
Q ss_pred ceeecCCCccCCCCC-----CCCCCccCCCCceeccCCCC----CCCCCCCCceeccCCCccccCCCCcCCCC
Q psy4720 29 GQCQCKPNVIGRRCE-----MCATGYYGFPDCHPCNCPFT----AVCDSYTGKLAQVLIQVVTFPNYPSCKLW 92 (95)
Q Consensus 29 G~C~C~~g~~G~~C~-----~C~~G~~g~~~C~~C~C~~~----~~C~~~tG~C~c~~~~~~~~~~c~~c~~~ 92 (95)
-.|.|++++.|+.|+ .|+.||||+|.|.+|+|.-. ..||..+|+|.||..+--.-..|-.|..+
T Consensus 1739 Y~C~C~~g~~G~~Ce~~~dq~CPrGWWG~P~CgpC~CavsKgfdp~CnKt~G~CqCKe~hy~~~~~Cl~CdC~ 1811 (2531)
T KOG4289|consen 1739 YTCECPPGYTGPYCELRADQPCPRGWWGFPTCGPCNCAVSKGFDPDCNKTNGQCQCKENHYRPIGSCLPCDCY 1811 (2531)
T ss_pred eeEECCCcccCcchhhhccCCCCCcccCCCCccCccccccCCCCCCccccCcceeeccccccCCCcceeeccc
Confidence 378999999999997 69999999999999999964 57999999999988654333346666543
No 12
>cd00055 EGF_Lam Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in tandem arrays; the domain contains 4 disulfide bonds (loops a-d) the first three resemble epidermal growth factor (EGF); the number of copies of this domain in the different forms of laminins is highly variable ranging from 3 up to 22 copies
Probab=98.36 E-value=5e-07 Score=49.52 Aligned_cols=36 Identities=28% Similarity=0.418 Sum_probs=30.6
Q ss_pred eccCCCCC----CCCCCCCceeccCCCccccCCCCcCCCCCC
Q psy4720 57 PCNCPFTA----VCDSYTGKLAQVLIQVVTFPNYPSCKLWYN 94 (95)
Q Consensus 57 ~C~C~~~~----~C~~~tG~C~c~~~~~~~~~~c~~c~~~~~ 94 (95)
+|+|+..+ .|++.+|+|.|+. +++|.+|++|+++|.
T Consensus 1 ~C~C~~~g~~~~~C~~~~G~C~C~~--~~~G~~C~~C~~g~~ 40 (50)
T cd00055 1 PCDCNGHGSLSGQCDPGTGQCECKP--NTTGRRCDRCAPGYY 40 (50)
T ss_pred CCcCcCCCCCCccccCCCCEEeCCC--cCCCCCCCCCCCCCc
Confidence 36777653 5999999999998 999999999999883
No 13
>smart00180 EGF_Lam Laminin-type epidermal growth factor-like domai.
Probab=98.18 E-value=2.1e-06 Score=46.32 Aligned_cols=29 Identities=28% Similarity=0.285 Sum_probs=26.3
Q ss_pred CCCCCCCCceeccCCCccccCCCCcCCCCCC
Q psy4720 64 AVCDSYTGKLAQVLIQVVTFPNYPSCKLWYN 94 (95)
Q Consensus 64 ~~C~~~tG~C~c~~~~~~~~~~c~~c~~~~~ 94 (95)
..|++++|+|.|+. +++|++|++|+++|.
T Consensus 11 ~~C~~~~G~C~C~~--~~~G~~C~~C~~g~~ 39 (46)
T smart00180 11 GTCDPDTGQCECKP--NVTGRRCDRCAPGYY 39 (46)
T ss_pred CcccCCCCEEECCC--CCCCCCCCcCCCCcC
Confidence 46999999999998 999999999999984
No 14
>PF00053 Laminin_EGF: Laminin EGF-like (Domains III and V); InterPro: IPR002049 Laminins [] are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation. They are composed of distinct but related alpha, beta and gamma chains. The three chains form a cross-shaped molecule that consist of a long arm and three short globular arms. The long arm consist of a coiled coil structure contributed by all three chains and cross-linked by interchain disulphide bonds. Beside different types of globular domains each subunit contains, in its first half, consecutive repeats of about 60 amino acids in length that include eight conserved cysteines []. The tertiary structure [, ] of this domain is remotely similar in its N-terminal to that of the EGF-like module (see PDOC00021 from PROSITEDOC). It is known as a 'LE' or 'laminin-type EGF-like' domain. The number of copies of the LE domain in the different forms of laminins is highly variable; from 3 up to 22 copies have been found. A schematic representation of the topology of the four disulphide bonds in the LE domain is shown below. +-------------------+ +-|-----------+ | +--------+ +-----------------+ | | | | | | | | xxCxCxxxxxxxxxxxCxxxxxxxCxxCxxxxxGxxCxxCxxgaagxxxxxxxxxxxCxx sssssssssssssssssssssssssssssssssss 'C': conserved cysteine involved in a disulphide bond 'a': conserved aromatic residue 'G': conserved glycine (lower case = less conserved) 's': region similar to the EGF-like domain In mouse laminin gamma-1 chain, the seventh LE domain has been shown to be the only one that binds with a high affinity to nidogen []. The binding-sites are located on the surface within the loops C1-C3 and C5-C6 [, ]. Long consecutive arrays of LE domains in laminins form rod-like elements of limited flexibility [], which determine the spacing in the formation of laminin networks of basement membranes [].; PDB: 3TBD_A 3ZYG_B 3ZYI_B 2Y38_A 1KLO_A 1NPE_B 3ZYJ_B 1TLE_A.
Probab=98.10 E-value=8e-07 Score=48.35 Aligned_cols=34 Identities=32% Similarity=0.543 Sum_probs=27.5
Q ss_pred ccCCCCC----CCCCCCCceeccCCCccccCCCCcCCCCC
Q psy4720 58 CNCPFTA----VCDSYTGKLAQVLIQVVTFPNYPSCKLWY 93 (95)
Q Consensus 58 C~C~~~~----~C~~~tG~C~c~~~~~~~~~~c~~c~~~~ 93 (95)
|+|+..+ .|++.+|+|.|+. +++|++|++|+++|
T Consensus 1 C~C~~~~~~~~~C~~~~G~C~C~~--~~~G~~C~~C~~g~ 38 (49)
T PF00053_consen 1 CDCNPHGSSSQTCDPSTGQCVCKP--GTTGPRCDQCKPGY 38 (49)
T ss_dssp ESSTTCCBCCSSEEETCEEESBST--TEESTTS-EE-TTE
T ss_pred CcCcCCCCCCCcccCCCCEEeccc--cccCCcCcCCCCcc
Confidence 4566543 7999999999998 99999999999987
No 15
>KOG1388|consensus
Probab=98.09 E-value=1.7e-06 Score=60.34 Aligned_cols=84 Identities=29% Similarity=0.600 Sum_probs=65.8
Q ss_pred ccCCCCCccCCCCCCCCCCCccccCCceeecCCCccCCCCCCCCCCccCCC---CceeccCCCC-CCCCCCCCceeccCC
Q psy4720 3 ISFLHEALPCQCDIDGSKSFECEQFGGQCQCKPNVIGRRCEMCATGYYGFP---DCHPCNCPFT-AVCDSYTGKLAQVLI 78 (95)
Q Consensus 3 ~~~~~~C~~C~C~~~gs~~~~C~~~~G~C~C~~g~~G~~C~~C~~G~~g~~---~C~~C~C~~~-~~C~~~tG~C~c~~~ 78 (95)
+|++-.|..|.|+..+. |.....--.|..+..|.+|+.|..||||+. .|++|+|+.. ..|++.+|+|.|..
T Consensus 43 ~W~fl~cP~~~cNGh~~----c~t~~v~~~~~N~~~g~~c~kc~~g~~GdtN~g~c~~~~~~g~~~~~~~~~~~c~c~~- 117 (217)
T KOG1388|consen 43 IWRFLFCPLCQCNGHSD----CNTQHVCWRCENGTTGAHCEKCIVGFYGDTNGGKCQPCDCNGGASACVTLTGKCFCTT- 117 (217)
T ss_pred hhhhhcChHHHhcCCCC----cccceeeeeccCccccccCCceEEEEEecCCCCccCHhhhcCCeeeeeccCCcccccc-
Confidence 56666788888984443 443333237999999999999999999943 7999999986 47999999999854
Q ss_pred CccccCCCCcCCC
Q psy4720 79 QVVTFPNYPSCKL 91 (95)
Q Consensus 79 ~~~~~~~c~~c~~ 91 (95)
.+|.|..|++|+.
T Consensus 118 kgvvgd~c~~~e~ 130 (217)
T KOG1388|consen 118 KGVVGDLCPKCEV 130 (217)
T ss_pred ceEecccCccccc
Confidence 3788889999964
No 16
>KOG1225|consensus
Probab=97.44 E-value=0.0005 Score=53.82 Aligned_cols=57 Identities=28% Similarity=0.567 Sum_probs=41.9
Q ss_pred CCceeecCCCccCCCCCC-------------------CCCCccCCCCc----eeccCCCCCCCCCCCCceeccCCCcccc
Q psy4720 27 FGGQCQCKPNVIGRRCEM-------------------CATGYYGFPDC----HPCNCPFTAVCDSYTGKLAQVLIQVVTF 83 (95)
Q Consensus 27 ~~G~C~C~~g~~G~~C~~-------------------C~~G~~g~~~C----~~C~C~~~~~C~~~tG~C~c~~~~~~~~ 83 (95)
+.|+|+|+++|+|..|+. |.+||.|.. | -+=+|++++.|. .|+|.|.. +++|
T Consensus 263 ~~G~CIC~~Gf~G~dC~e~~Cp~~cs~~g~~~~g~CiC~~g~~G~d-Cs~~~cpadC~g~G~Ci--~G~C~C~~--Gy~G 337 (525)
T KOG1225|consen 263 VEGRCICPPGFTGDDCDELVCPVDCSGGGVCVDGECICNPGYSGKD-CSIRRCPADCSGHGKCI--DGECLCDE--GYTG 337 (525)
T ss_pred eCCeEeCCCCCcCCCCCcccCCcccCCCceecCCEeecCCCccccc-cccccCCccCCCCCccc--CCceEeCC--CCcC
Confidence 358999999999999973 444555522 2 123566778888 89999988 8888
Q ss_pred CCCCc
Q psy4720 84 PNYPS 88 (95)
Q Consensus 84 ~~c~~ 88 (95)
..|.+
T Consensus 338 ~~C~~ 342 (525)
T KOG1225|consen 338 ELCIQ 342 (525)
T ss_pred Ccccc
Confidence 88887
No 17
>smart00051 DSL delta serrate ligand.
Probab=96.44 E-value=0.0052 Score=35.21 Aligned_cols=39 Identities=23% Similarity=0.262 Sum_probs=25.6
Q ss_pred CCCCccCCCCceeccC----CCCCCCCCCCCceeccCCCccccCCC
Q psy4720 45 CATGYYGFPDCHPCNC----PFTAVCDSYTGKLAQVLIQVVTFPNY 86 (95)
Q Consensus 45 C~~G~~g~~~C~~C~C----~~~~~C~~~tG~C~c~~~~~~~~~~c 86 (95)
|.++|||...-+.|.+ ..+..||+ +|++.|.+ ++.|++|
T Consensus 21 C~~~~yG~~C~~~C~~~~d~~~~~~Cd~-~G~~~C~~--Gw~G~~C 63 (63)
T smart00051 21 CDENYYGEGCNKFCRPRDDFFGHYTCDE-NGNKGCLE--GWMGPYC 63 (63)
T ss_pred CCCCCcCCccCCEeCcCccccCCccCCc-CCCEecCC--CCcCCCC
Confidence 4455555332234544 33467997 79999998 8998876
No 18
>PF12661 hEGF: Human growth factor-like EGF; PDB: 2YGQ_A 2E26_A 3A7Q_A 2YGP_A 2YGO_A 1HRE_A 1HAE_A 1HAF_A 1HRF_A.
Probab=95.98 E-value=0.0047 Score=24.84 Aligned_cols=13 Identities=46% Similarity=1.214 Sum_probs=10.1
Q ss_pred eeecCCCccCCCC
Q psy4720 30 QCQCKPNVIGRRC 42 (95)
Q Consensus 30 ~C~C~~g~~G~~C 42 (95)
.|+|++||+|.+|
T Consensus 1 ~C~C~~G~~G~~C 13 (13)
T PF12661_consen 1 TCQCPPGWTGPNC 13 (13)
T ss_dssp EEEE-TTEETTTT
T ss_pred CccCcCCCcCCCC
Confidence 4889999999876
No 19
>PF07974 EGF_2: EGF-like domain; InterPro: IPR013111 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length. This entry contains EGF domains found in a variety of extracellular and membrane proteins
Probab=95.83 E-value=0.01 Score=29.55 Aligned_cols=25 Identities=32% Similarity=0.881 Sum_probs=20.1
Q ss_pred CCCCCCCCCccccCCceeecCCCccCCCC
Q psy4720 14 CDIDGSKSFECEQFGGQCQCKPNVIGRRC 42 (95)
Q Consensus 14 C~~~gs~~~~C~~~~G~C~C~~g~~G~~C 42 (95)
|..+|. |....++|+|.++|+|+.|
T Consensus 8 C~~~G~----C~~~~g~C~C~~g~~G~~C 32 (32)
T PF07974_consen 8 CSGHGT----CVSPCGRCVCDSGYTGPDC 32 (32)
T ss_pred cCCCCE----EeCCCCEEECCCCCcCCCC
Confidence 566664 8776799999999999876
No 20
>smart00051 DSL delta serrate ligand.
Probab=95.50 E-value=0.02 Score=32.78 Aligned_cols=38 Identities=18% Similarity=0.384 Sum_probs=21.5
Q ss_pred cCCCCC-ccCCCCCCCCCCCccccCCceeecCCCccCCCC
Q psy4720 4 SFLHEA-LPCQCDIDGSKSFECEQFGGQCQCKPNVIGRRC 42 (95)
Q Consensus 4 ~~~~~C-~~C~C~~~gs~~~~C~~~~G~C~C~~g~~G~~C 42 (95)
+|...| +.|.+......+..|++ .|.++|.+||.|+.|
T Consensus 25 ~yG~~C~~~C~~~~d~~~~~~Cd~-~G~~~C~~Gw~G~~C 63 (63)
T smart00051 25 YYGEGCNKFCRPRDDFFGHYTCDE-NGNKGCLEGWMGPYC 63 (63)
T ss_pred CcCCccCCEeCcCccccCCccCCc-CCCEecCCCCcCCCC
Confidence 345555 33443221222345776 588888888888765
No 21
>KOG4260|consensus
Probab=94.99 E-value=0.022 Score=41.73 Aligned_cols=52 Identities=27% Similarity=0.446 Sum_probs=35.4
Q ss_pred cCCCccCCCCCCCCCCccCCCCceeccCCCCCCCCC-----CCCceeccCCCccccCCCCcCCCCC
Q psy4720 33 CKPNVIGRRCEMCATGYYGFPDCHPCNCPFTAVCDS-----YTGKLAQVLIQVVTFPNYPSCKLWY 93 (95)
Q Consensus 33 C~~g~~G~~C~~C~~G~~g~~~C~~C~C~~~~~C~~-----~tG~C~c~~~~~~~~~~c~~c~~~~ 93 (95)
|++|+.|+.|..|+-|.- ++ |+.++.|+- -+|.|.|.. +.+|+.|..|..+|
T Consensus 132 Cp~gtyGpdCl~Cpggse-----r~--C~GnG~C~GdGsR~GsGkCkC~~--GY~Gp~C~~Cg~ey 188 (350)
T KOG4260|consen 132 CPDGTYGPDCLQCPGGSE-----RP--CFGNGSCHGDGSREGSGKCKCET--GYTGPLCRYCGIEY 188 (350)
T ss_pred cCCCCcCCccccCCCCCc-----CC--cCCCCcccCCCCCCCCCcccccC--CCCCccccccchHH
Confidence 666777777766654322 22 455555543 568888887 99999999998876
No 22
>PF07974 EGF_2: EGF-like domain; InterPro: IPR013111 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length. This entry contains EGF domains found in a variety of extracellular and membrane proteins
Probab=94.59 E-value=0.03 Score=27.84 Aligned_cols=25 Identities=24% Similarity=0.226 Sum_probs=20.7
Q ss_pred CCCCCCCCCCCCceeccCCCccccCCC
Q psy4720 60 CPFTAVCDSYTGKLAQVLIQVVTFPNY 86 (95)
Q Consensus 60 C~~~~~C~~~tG~C~c~~~~~~~~~~c 86 (95)
|++++.|+..+|+|.|.. ++.|+.|
T Consensus 8 C~~~G~C~~~~g~C~C~~--g~~G~~C 32 (32)
T PF07974_consen 8 CSGHGTCVSPCGRCVCDS--GYTGPDC 32 (32)
T ss_pred cCCCCEEeCCCCEEECCC--CCcCCCC
Confidence 667788998889999988 7888765
No 23
>KOG4260|consensus
Probab=94.22 E-value=0.039 Score=40.43 Aligned_cols=49 Identities=24% Similarity=0.606 Sum_probs=35.7
Q ss_pred cCCCCCccC------CCCCCCCCCC-ccccCCceeecCCCccCCCCCCCCCCccCC
Q psy4720 4 SFLHEALPC------QCDIDGSKSF-ECEQFGGQCQCKPNVIGRRCEMCATGYYGF 52 (95)
Q Consensus 4 ~~~~~C~~C------~C~~~gs~~~-~C~~~~G~C~C~~g~~G~~C~~C~~G~~g~ 52 (95)
-|...|++| .|...|+.+. .-..-+|.|.|.+||+|+.|..|.++||-.
T Consensus 136 tyGpdCl~Cpggser~C~GnG~C~GdGsR~GsGkCkC~~GY~Gp~C~~Cg~eyfes 191 (350)
T KOG4260|consen 136 TYGPDCLQCPGGSERPCFGNGSCHGDGSREGSGKCKCETGYTGPLCRYCGIEYFES 191 (350)
T ss_pred CcCCccccCCCCCcCCcCCCCcccCCCCCCCCCcccccCCCCCccccccchHHHHh
Confidence 356778777 2565555321 123446899999999999999999999963
No 24
>KOG1226|consensus
Probab=93.53 E-value=0.14 Score=41.94 Aligned_cols=15 Identities=47% Similarity=1.365 Sum_probs=14.0
Q ss_pred ceeecCCCccCCCCC
Q psy4720 29 GQCQCKPNVIGRRCE 43 (95)
Q Consensus 29 G~C~C~~g~~G~~C~ 43 (95)
|+|.|.+||.|.+|+
T Consensus 478 G~C~C~~G~~G~~CE 492 (783)
T KOG1226|consen 478 GQCRCDEGWLGKKCE 492 (783)
T ss_pred cceecCCCCCCCccc
Confidence 789999999999996
No 25
>KOG1225|consensus
Probab=93.10 E-value=0.28 Score=38.80 Aligned_cols=53 Identities=26% Similarity=0.574 Sum_probs=34.0
Q ss_pred CCceeecCCCccCCCCC-------------------CCCCCccCCCCceeccCCCCCCCCCCCCceeccCCCccccCC
Q psy4720 27 FGGQCQCKPNVIGRRCE-------------------MCATGYYGFPDCHPCNCPFTAVCDSYTGKLAQVLIQVVTFPN 85 (95)
Q Consensus 27 ~~G~C~C~~g~~G~~C~-------------------~C~~G~~g~~~C~~C~C~~~~~C~~~tG~C~c~~~~~~~~~~ 85 (95)
..|+|+|.++|.|..|+ +|.+||.|...-++ .|++++.| +.| |.|+. ++.|++
T Consensus 294 ~~g~CiC~~g~~G~dCs~~~cpadC~g~G~Ci~G~C~C~~Gy~G~~C~~~-~C~~~g~c--v~g-C~C~~--Gw~G~d 365 (525)
T KOG1225|consen 294 VDGECICNPGYSGKDCSIRRCPADCSGHGKCIDGECLCDEGYTGELCIQR-ACSGGGQC--VNG-CKCKK--GWRGPD 365 (525)
T ss_pred cCCEeecCCCccccccccccCCccCCCCCcccCCceEeCCCCcCCccccc-ccCCCcee--ccC-ceecc--CccCCC
Confidence 45799999999999995 24556666432222 34443334 467 88877 677665
No 26
>KOG3509|consensus
Probab=89.85 E-value=0.62 Score=39.28 Aligned_cols=87 Identities=29% Similarity=0.581 Sum_probs=57.1
Q ss_pred cCCCCCccCCCCCCCCCCCccccCCcee-ecCCCccCCCCCCCCCCccCCC------Ccee-------ccCCCC--CCCC
Q psy4720 4 SFLHEALPCQCDIDGSKSFECEQFGGQC-QCKPNVIGRRCEMCATGYYGFP------DCHP-------CNCPFT--AVCD 67 (95)
Q Consensus 4 ~~~~~C~~C~C~~~gs~~~~C~~~~G~C-~C~~g~~G~~C~~C~~G~~g~~------~C~~-------C~C~~~--~~C~ 67 (95)
.+...+..|.++.++. .|+...+.+ .|..++.|.+|+.|.+|++++. .+++ +.+++. ..++
T Consensus 746 ~~~~~~~~c~~~~h~~---~c~~~~~~nt~~q~~~~~~~~~~~~~g~~~da~~g~~~D~~p~~~l~~~~~~~~r~~l~~~ 822 (964)
T KOG3509|consen 746 LYPGLCEDCECNSHIS---QCEDDLGYNTDCQNNTEGDRCELCSPGTYGDARRGTPEDCRPATALTIQCSCNNRSPLSCD 822 (964)
T ss_pred cCcccCcccccCCCcc---cccccccccccccccCccceeeecCCCccccCccCCcccCCccchhhhhhhhcccCccccc
Confidence 4556666677777666 588888888 6999999999999999999975 1222 222221 1122
Q ss_pred CCCCceeccCCCccccCCCCcCCCCCC
Q psy4720 68 SYTGKLAQVLIQVVTFPNYPSCKLWYN 94 (95)
Q Consensus 68 ~~tG~C~c~~~~~~~~~~c~~c~~~~~ 94 (95)
...-.|. ..+.+.+|.+|+++..+|+
T Consensus 823 ~~~~~~~-~~p~~~~g~~~~~~~~~~~ 848 (964)
T KOG3509|consen 823 GFGPGCL-LCPHNTEGTTCERVKAGYY 848 (964)
T ss_pred cCCCCcc-cCCCCccccchhhhccccc
Confidence 2221333 2334788888888888774
No 27
>KOG3509|consensus
Probab=86.08 E-value=0.8 Score=38.66 Aligned_cols=70 Identities=24% Similarity=0.426 Sum_probs=52.4
Q ss_pred cccCCceeecCCCccCCCCCCCCCCccCCC-------CceeccCCCC-CCCCCCCCceeccCCCccccCCCCcCCCCCC
Q psy4720 24 CEQFGGQCQCKPNVIGRRCEMCATGYYGFP-------DCHPCNCPFT-AVCDSYTGKLAQVLIQVVTFPNYPSCKLWYN 94 (95)
Q Consensus 24 C~~~~G~C~C~~g~~G~~C~~C~~G~~g~~-------~C~~C~C~~~-~~C~~~tG~C~c~~~~~~~~~~c~~c~~~~~ 94 (95)
++...-+|+|++++.|.+|+.|.+++.-.. .+..|.++.+ ..|+...+.+.- .-+...+..|..|.++|+
T Consensus 713 ~~~~~~~C~c~~g~~G~~ce~c~e~~~ls~t~~~~~~~~~~c~~~~h~~~c~~~~~~nt~-~q~~~~~~~~~~~~~g~~ 790 (964)
T KOG3509|consen 713 IAAEVEQCQCPKGLVGTSCEDCAEGYTLSTTGGLYPGLCEDCECNSHISQCEDDLGYNTD-CQNNTEGDRCELCSPGTY 790 (964)
T ss_pred hhhhccccccCccccCcccccccccccccccCCcCcccCcccccCCCccccccccccccc-ccccCccceeeecCCCcc
Confidence 355567899999999999999999876322 3456777766 469988888873 234677788999988875
No 28
>KOG1226|consensus
Probab=86.03 E-value=1.1 Score=36.92 Aligned_cols=15 Identities=40% Similarity=1.185 Sum_probs=13.1
Q ss_pred ceeecCCCccCCCCC
Q psy4720 29 GQCQCKPNVIGRRCE 43 (95)
Q Consensus 29 G~C~C~~g~~G~~C~ 43 (95)
|+|+|.+||+|..|+
T Consensus 566 G~CvC~~GwtG~~C~ 580 (783)
T KOG1226|consen 566 GRCVCNPGWTGSACN 580 (783)
T ss_pred CcEEcCCCCccCCCC
Confidence 788899999999885
No 29
>KOG1219|consensus
Probab=82.06 E-value=2.4 Score=39.65 Aligned_cols=34 Identities=26% Similarity=0.694 Sum_probs=21.8
Q ss_pred CCCccCCCCCCCCCCCccccC---CceeecCCCccCCCCCC
Q psy4720 7 HEALPCQCDIDGSKSFECEQF---GGQCQCKPNVIGRRCEM 44 (95)
Q Consensus 7 ~~C~~C~C~~~gs~~~~C~~~---~G~C~C~~g~~G~~C~~ 44 (95)
..|..=.|...|+ |... .-+|.|++-|.|.+|+.
T Consensus 3865 d~C~~npCqhgG~----C~~~~~ggy~CkCpsqysG~~CEi 3901 (4289)
T KOG1219|consen 3865 DPCNDNPCQHGGT----CISQPKGGYKCKCPSQYSGNHCEI 3901 (4289)
T ss_pred cccccCcccCCCE----ecCCCCCceEEeCcccccCccccc
Confidence 4454444655554 4332 23889999999999974
No 30
>KOG1218|consensus
Probab=80.44 E-value=9.2 Score=27.15 Aligned_cols=48 Identities=29% Similarity=0.660 Sum_probs=29.1
Q ss_pred cccCCceeecCCCccCCCCCCCCCCccCCCCce-eccCCCCCCCCCCCCceeccC
Q psy4720 24 CEQFGGQCQCKPNVIGRRCEMCATGYYGFPDCH-PCNCPFTAVCDSYTGKLAQVL 77 (95)
Q Consensus 24 C~~~~G~C~C~~g~~G~~C~~C~~G~~g~~~C~-~C~C~~~~~C~~~tG~C~c~~ 77 (95)
++..++.|.|++++.|.++..-... |. .+.+.+.+.|+..++.+.+..
T Consensus 157 ~~~~~~~c~c~~g~~g~~~~~~~~~------c~~~~~~~~g~~C~~~~~~~~~~~ 205 (316)
T KOG1218|consen 157 CDCKNGICTCQPGFVGVFCVESCSG------CSPLTACENGAKCNRSTGSCLCYP 205 (316)
T ss_pred cCCCCCceeccCCcccccccccCCC------cCCCcccCCCCeeeccccccccCC
Confidence 4555677777777777776532211 22 344555457888888777655
No 31
>cd00054 EGF_CA Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.
Probab=79.30 E-value=3.4 Score=19.55 Aligned_cols=13 Identities=46% Similarity=1.370 Sum_probs=9.5
Q ss_pred eeecCCCccCCCC
Q psy4720 30 QCQCKPNVIGRRC 42 (95)
Q Consensus 30 ~C~C~~g~~G~~C 42 (95)
.|.|+++|.|.+|
T Consensus 25 ~C~C~~g~~g~~C 37 (38)
T cd00054 25 RCSCPPGYTGRNC 37 (38)
T ss_pred EeECCCCCcCCcC
Confidence 5778888877665
No 32
>smart00179 EGF_CA Calcium-binding EGF-like domain.
Probab=73.31 E-value=5.9 Score=19.02 Aligned_cols=13 Identities=46% Similarity=1.408 Sum_probs=9.2
Q ss_pred eeecCCCcc-CCCC
Q psy4720 30 QCQCKPNVI-GRRC 42 (95)
Q Consensus 30 ~C~C~~g~~-G~~C 42 (95)
.|.|+++|. |.+|
T Consensus 25 ~C~C~~g~~~g~~C 38 (39)
T smart00179 25 RCECPPGYTDGRNC 38 (39)
T ss_pred EeECCCCCccCCcC
Confidence 477777777 7665
No 33
>PF01414 DSL: Delta serrate ligand; InterPro: IPR001774 Ligands of the Delta/Serrate/lag-2 (DSL) family and their receptors, members of the lin-12/Notch family, mediate cell-cell interactions that specify cell fate in invertebrates and vertebrates. In Caenorhabditis elegans, two DSL genes, lag-2 and apx-1, influence different cell fate decisions during development []. Molecular interaction between Notch and Serrate, another EGF-homologous transmembrane protein containing a region of striking similarity to Delta, has been shown and the same two EGF repeats of Notch may also constitute a Serrate binding domain [, ].; GO: 0007154 cell communication, 0016020 membrane; PDB: 2VJ2_A.
Probab=71.34 E-value=1.3 Score=25.25 Aligned_cols=45 Identities=24% Similarity=0.341 Sum_probs=19.2
Q ss_pred eeecCCCccCCCCC-CCCCCccCCCCceeccCCCCCCCCCCCCceeccCCCccccCCC
Q psy4720 30 QCQCKPNVIGRRCE-MCATGYYGFPDCHPCNCPFTAVCDSYTGKLAQVLIQVVTFPNY 86 (95)
Q Consensus 30 ~C~C~~g~~G~~C~-~C~~G~~g~~~C~~C~C~~~~~C~~~tG~C~c~~~~~~~~~~c 86 (95)
+..|.++|.|..|+ .|.|.--. ..+-.|+ .+|+=.|.+ ++.|++|
T Consensus 18 rv~C~~nyyG~~C~~~C~~~~d~---------~ghy~Cd-~~G~~~C~~--Gw~G~~C 63 (63)
T PF01414_consen 18 RVVCDENYYGPNCSKFCKPRDDS---------FGHYTCD-SNGNKVCLP--GWTGPNC 63 (63)
T ss_dssp -----TTEETTTT-EE---EEET---------TEEEEE--SS--EEE-T--TEESTTS
T ss_pred EEECCCCCCCccccCCcCCCcCC---------cCCcccC-CCCCCCCCC--CCcCCCC
Confidence 34566666666665 34432000 0123588 589999988 8999876
No 34
>KOG1218|consensus
Probab=70.46 E-value=12 Score=26.55 Aligned_cols=53 Identities=21% Similarity=0.331 Sum_probs=33.3
Q ss_pred eeecCCCccCCCCCCCCCCccCCCCceeccCCCCCCCCCCCCceeccCCCccccCCCCc
Q psy4720 30 QCQCKPNVIGRRCEMCATGYYGFPDCHPCNCPFTAVCDSYTGKLAQVLIQVVTFPNYPS 88 (95)
Q Consensus 30 ~C~C~~g~~G~~C~~C~~G~~g~~~C~~C~C~~~~~C~~~tG~C~c~~~~~~~~~~c~~ 88 (95)
.|.+..++.+.+|.. ++++|...-+.| .....++..++.|.|.. ++.+.++..
T Consensus 125 ~c~~~~~~~~~~C~~--~~~~g~~C~~~c--~~~~~~~~~~~~c~c~~--g~~g~~~~~ 177 (316)
T KOG1218|consen 125 ECRCGGGYIGEQCGE--ENLVGLKCQRDC--QCTGGCDCKNGICTCQP--GFVGVFCVE 177 (316)
T ss_pred ceecCCcCccccccc--cCCCCCCccCCC--CCccccCCCCCceeccC--Ccccccccc
Confidence 466666777777665 566663322344 33356888889999877 666665543
No 35
>KOG1219|consensus
Probab=69.14 E-value=7.2 Score=36.85 Aligned_cols=58 Identities=22% Similarity=0.419 Sum_probs=41.2
Q ss_pred ccccCC--ceeecCCCccCCCCCCCCCCccCCCCceeccCCCCCCCCCCCC--ceeccCCCccccCCCC
Q psy4720 23 ECEQFG--GQCQCKPNVIGRRCEMCATGYYGFPDCHPCNCPFTAVCDSYTG--KLAQVLIQVVTFPNYP 87 (95)
Q Consensus 23 ~C~~~~--G~C~C~~g~~G~~C~~C~~G~~g~~~C~~C~C~~~~~C~~~tG--~C~c~~~~~~~~~~c~ 87 (95)
.|.+.. -.|.|+.+|+|.+|+.= |...|..=.|..++.|-.+.| .|.|.+ +.-|.+|.
T Consensus 3916 tCip~~n~f~CnC~~gyTG~~Ce~~-----Gi~eCs~n~C~~gg~C~n~~gsf~CncT~--g~~gr~c~ 3977 (4289)
T KOG1219|consen 3916 TCIPFYNGFLCNCPNGYTGKRCEAR-----GISECSKNVCGTGGQCINIPGSFHCNCTP--GILGRTCC 3977 (4289)
T ss_pred EEEecCCCeeEeCCCCccCceeecc-----cccccccccccCCceeeccCCceEeccCh--hHhcccCc
Confidence 365543 36789999999999752 345566555677788888888 677766 77777763
No 36
>PF00008 EGF: EGF-like domain This is a sub-family of the Pfam entry This is a sub-family of the Pfam entry; InterPro: IPR006209 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length.; GO: 0005515 protein binding; PDB: 1WHE_A 1CCF_A 1APO_A 1WHF_A 2VJ3_A 1TOZ_A 4D90_B 3CFW_A 1EDM_B 1IXA_A ....
Probab=69.06 E-value=3.3 Score=20.08 Aligned_cols=13 Identities=38% Similarity=1.035 Sum_probs=10.3
Q ss_pred ceeecCCCccCCC
Q psy4720 29 GQCQCKPNVIGRR 41 (95)
Q Consensus 29 G~C~C~~g~~G~~ 41 (95)
-.|.|+++|+|++
T Consensus 20 y~C~C~~G~~G~~ 32 (32)
T PF00008_consen 20 YTCECPPGYTGKR 32 (32)
T ss_dssp EEEEEBTTEESTT
T ss_pred EEeECCCCCccCC
Confidence 4788999998864
No 37
>KOG0196|consensus
Probab=66.16 E-value=7.8 Score=32.73 Aligned_cols=34 Identities=35% Similarity=0.834 Sum_probs=26.3
Q ss_pred CceeecCCCcc----CCCCCCCCCCccCCC----CceeccCC
Q psy4720 28 GGQCQCKPNVI----GRRCEMCATGYYGFP----DCHPCNCP 61 (95)
Q Consensus 28 ~G~C~C~~g~~----G~~C~~C~~G~~g~~----~C~~C~C~ 61 (95)
.|.|.|++||. |..|..|++|+|-.. .|.+|--+
T Consensus 258 iG~C~C~aGye~~~~~~~C~aCp~G~yK~~~~~~~C~~CP~~ 299 (996)
T KOG0196|consen 258 IGGCVCKAGYEEAENGKACQACPPGTYKASQGDSLCLPCPPN 299 (996)
T ss_pred cCceeecCCCCcccCCCcceeCCCCcccCCCCCCCCCCCCCC
Confidence 58999999985 678999999999643 56666433
No 38
>KOG1388|consensus
Probab=65.56 E-value=2.4 Score=29.95 Aligned_cols=37 Identities=32% Similarity=0.912 Sum_probs=29.7
Q ss_pred CCCccCCCCCCCCCCCccccCCceeecC-CCccCCCCCCCC
Q psy4720 7 HEALPCQCDIDGSKSFECEQFGGQCQCK-PNVIGRRCEMCA 46 (95)
Q Consensus 7 ~~C~~C~C~~~gs~~~~C~~~~G~C~C~-~g~~G~~C~~C~ 46 (95)
..|++|.|+.... .+.+.+++|.|+ .+++|..|++|.
T Consensus 92 g~c~~~~~~g~~~---~~~~~~~~c~c~~kgvvgd~c~~~e 129 (217)
T KOG1388|consen 92 GKCQPCDCNGGAS---ACVTLTGKCFCTTKGVVGDLCPKCE 129 (217)
T ss_pred CccCHhhhcCCee---eeeccCCccccccceEecccCcccc
Confidence 5688888887766 488889999994 589999998654
No 39
>smart00181 EGF Epidermal growth factor-like domain.
Probab=61.98 E-value=6.3 Score=18.68 Aligned_cols=14 Identities=43% Similarity=1.198 Sum_probs=8.7
Q ss_pred ceeecCCCccC-CCC
Q psy4720 29 GQCQCKPNVIG-RRC 42 (95)
Q Consensus 29 G~C~C~~g~~G-~~C 42 (95)
-.|.|+++|.| ..|
T Consensus 20 ~~C~C~~g~~g~~~C 34 (35)
T smart00181 20 YTCSCPPGYTGDKRC 34 (35)
T ss_pred eEeECCCCCccCCcc
Confidence 45677777776 444
No 40
>cd00053 EGF Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium.
Probab=59.69 E-value=7.4 Score=17.90 Aligned_cols=12 Identities=33% Similarity=0.861 Sum_probs=7.6
Q ss_pred ceeecCCCccCC
Q psy4720 29 GQCQCKPNVIGR 40 (95)
Q Consensus 29 G~C~C~~g~~G~ 40 (95)
..|.|+++|.|.
T Consensus 21 ~~C~C~~g~~g~ 32 (36)
T cd00053 21 YRCVCPPGYTGD 32 (36)
T ss_pred eEeECCCCCccc
Confidence 456666666665
No 41
>PHA02887 EGF-like protein; Provisional
Probab=58.17 E-value=8.7 Score=24.82 Aligned_cols=17 Identities=29% Similarity=0.718 Sum_probs=12.2
Q ss_pred CceeecCCCccCCCCCC
Q psy4720 28 GGQCQCKPNVIGRRCEM 44 (95)
Q Consensus 28 ~G~C~C~~g~~G~~C~~ 44 (95)
.-.|.|..||+|.+|+.
T Consensus 107 epsCrC~~GYtG~RCE~ 123 (126)
T PHA02887 107 EKFCICNKGYTGIRCDE 123 (126)
T ss_pred CceeECCCCcccCCCCc
Confidence 45677888888877764
No 42
>PF09064 Tme5_EGF_like: Thrombomodulin like fifth domain, EGF-like; InterPro: IPR015149 This domain adopts a fold similar to other EGF domains, with a flat major and a twisted minor beta sheet. Disulphide pairing, however, is not of the usual 1-3, 2-4, 5-6 type; rather 1-2, 3-4, 5-6 pairing is found. Its extended major sheet (strands beta-2 and beta-3 and the connecting loop) projects into thrombin's active site groove. This domain is required for interaction of thrombomodulin with thrombin, and subsequent activation of protein-C []. ; GO: 0004888 transmembrane signaling receptor activity, 0016021 integral to membrane
Probab=46.83 E-value=14 Score=18.56 Aligned_cols=16 Identities=38% Similarity=0.920 Sum_probs=11.3
Q ss_pred cccc-CCceeecCCCcc
Q psy4720 23 ECEQ-FGGQCQCKPNVI 38 (95)
Q Consensus 23 ~C~~-~~G~C~C~~g~~ 38 (95)
.|++ ..++|.|++||.
T Consensus 11 ~CDpn~~~~C~CPeGyI 27 (34)
T PF09064_consen 11 DCDPNSPGQCFCPEGYI 27 (34)
T ss_pred ccCCCCCCceeCCCceE
Confidence 4665 346888888876
No 43
>PF07699 GCC2_GCC3: GCC2 and GCC3; InterPro: IPR011641 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. This entry represents various ephrin type A and B receptors, which have tyrosine kinase activity.
Probab=43.73 E-value=20 Score=18.71 Aligned_cols=13 Identities=31% Similarity=0.838 Sum_probs=8.4
Q ss_pred CCCCCCCCCccCC
Q psy4720 40 RRCEMCATGYYGF 52 (95)
Q Consensus 40 ~~C~~C~~G~~g~ 52 (95)
..|..|+.|+|..
T Consensus 9 ~~C~~Cp~GtYq~ 21 (48)
T PF07699_consen 9 NKCQPCPKGTYQD 21 (48)
T ss_pred CccCCCCCCccCC
Confidence 3566777777753
No 44
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=43.03 E-value=19 Score=23.68 Aligned_cols=18 Identities=33% Similarity=0.739 Sum_probs=14.4
Q ss_pred CCceeecCCCccCCCCCC
Q psy4720 27 FGGQCQCKPNVIGRRCEM 44 (95)
Q Consensus 27 ~~G~C~C~~g~~G~~C~~ 44 (95)
..-.|.|..||+|.+|+.
T Consensus 65 ~~~~CrC~~GYtGeRCEh 82 (139)
T PHA03099 65 DGMYCRCSHGYTGIRCQH 82 (139)
T ss_pred CCceeECCCCcccccccc
Confidence 345788999999999974
No 45
>PF12947 EGF_3: EGF domain; InterPro: IPR024731 This entry represents an EGF domain found in the the C terminus of malarial parasite merozoite surface protein 1 [], as well as other proteins.; PDB: 2NPR_A 1N1I_C 1B9W_A 1YO8_A 2RHP_A.
Probab=36.98 E-value=17 Score=18.16 Aligned_cols=12 Identities=42% Similarity=0.908 Sum_probs=8.5
Q ss_pred ceeecCCCccCC
Q psy4720 29 GQCQCKPNVIGR 40 (95)
Q Consensus 29 G~C~C~~g~~G~ 40 (95)
-.|+|++||.|.
T Consensus 21 ~~C~C~~Gy~Gd 32 (36)
T PF12947_consen 21 YTCTCKPGYEGD 32 (36)
T ss_dssp EEEEE-CEEECC
T ss_pred EEeECCCCCccC
Confidence 478899988874
No 46
>cd00185 TNFR Tumor necrosis factor receptor (TNFR) domain; superfamily of TNF-like receptor domains. When bound to TNF-like cytokines, TNFRs trigger multiple signal transduction pathways, they are involved in inflammation response, apoptosis, autoimmunity and organogenesis. TNFRs domains are elongated with generally three tandem repeats of cysteine-rich domains (CRDs). They fit in the grooves between protomers within the ligand trimer. Some TNFRs, such as NGFR and HveA, bind ligands with no structural similarity to TNF and do not bind ligand trimers.
Probab=31.56 E-value=91 Score=18.67 Aligned_cols=13 Identities=38% Similarity=0.751 Sum_probs=8.5
Q ss_pred CCCCCCCCCccCC
Q psy4720 40 RRCEMCATGYYGF 52 (95)
Q Consensus 40 ~~C~~C~~G~~g~ 52 (95)
..|..|++|+|-.
T Consensus 33 t~C~~C~~g~ys~ 45 (98)
T cd00185 33 TVCEPCPPGTYTD 45 (98)
T ss_pred CeecCCCCCCccc
Confidence 4566777777753
No 47
>KOG1214|consensus
Probab=29.18 E-value=52 Score=28.34 Aligned_cols=50 Identities=24% Similarity=0.449 Sum_probs=26.5
Q ss_pred CceeecCCCccCCCCCCCCCCccCCC-------CceeccCCCCCCCCCCCC--ceeccC
Q psy4720 28 GGQCQCKPNVIGRRCEMCATGYYGFP-------DCHPCNCPFTAVCDSYTG--KLAQVL 77 (95)
Q Consensus 28 ~G~C~C~~g~~G~~C~~C~~G~~g~~-------~C~~C~C~~~~~C~~~tG--~C~c~~ 77 (95)
.|+++|...=.+..--.|.|||-|+. .|.+=.|++..+|..+.| .|.|++
T Consensus 796 ~g~a~c~~hGgs~y~C~CLPGfsGDG~~c~dvDeC~psrChp~A~CyntpgsfsC~C~p 854 (1289)
T KOG1214|consen 796 AGQARCVHHGGSTYSCACLPGFSGDGHQCTDVDECSPSRCHPAATCYNTPGSFSCRCQP 854 (1289)
T ss_pred CCceEEEecCCceEEEeecCCccCCccccccccccCccccCCCceEecCCCcceeeccc
Confidence 35555443322222225677777653 355555666666665555 466655
No 48
>PF12714 TILa: TILa domain
Probab=24.90 E-value=55 Score=17.83 Aligned_cols=14 Identities=21% Similarity=0.798 Sum_probs=6.1
Q ss_pred CCCCC-ccCCCCCCC
Q psy4720 5 FLHEA-LPCQCDIDG 18 (95)
Q Consensus 5 ~~~~C-~~C~C~~~g 18 (95)
+...| +.|.|...+
T Consensus 17 ~~~~C~~~C~C~~~g 31 (56)
T PF12714_consen 17 WTDDCTQRCTCQPNG 31 (56)
T ss_pred eCCCCCEeEEEcCCC
Confidence 33344 445554333
No 49
>PF12662 cEGF: Complement Clr-like EGF-like
Probab=23.11 E-value=53 Score=15.00 Aligned_cols=9 Identities=33% Similarity=1.021 Sum_probs=5.7
Q ss_pred eeecCCCcc
Q psy4720 30 QCQCKPNVI 38 (95)
Q Consensus 30 ~C~C~~g~~ 38 (95)
.|.|++||.
T Consensus 3 ~C~C~~Gy~ 11 (24)
T PF12662_consen 3 TCSCPPGYQ 11 (24)
T ss_pred EeeCCCCCc
Confidence 466666665
No 50
>PHA02637 TNF-alpha-receptor-like protein; Provisional
Probab=22.11 E-value=1e+02 Score=20.06 Aligned_cols=12 Identities=25% Similarity=0.902 Sum_probs=7.3
Q ss_pred CCCCCCCCCccC
Q psy4720 40 RRCEMCATGYYG 51 (95)
Q Consensus 40 ~~C~~C~~G~~g 51 (95)
..|..|++|+|-
T Consensus 63 T~C~PCp~GTYT 74 (127)
T PHA02637 63 TQCTPCGSGTFT 74 (127)
T ss_pred cccccCCCCCee
Confidence 455667777663
No 51
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=21.68 E-value=59 Score=18.00 Aligned_cols=40 Identities=25% Similarity=0.603 Sum_probs=27.7
Q ss_pred CccCCCCCCCCCCcc-CCC--CceeccCCCCCCCCCCCCceec
Q psy4720 36 NVIGRRCEMCATGYY-GFP--DCHPCNCPFTAVCDSYTGKLAQ 75 (95)
Q Consensus 36 g~~G~~C~~C~~G~~-g~~--~C~~C~C~~~~~C~~~tG~C~c 75 (95)
++.|.+|..|..-+. +.. .|..|.=..+..|-...|.|.-
T Consensus 2 ~~~~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~~g~C~~ 44 (54)
T PF14446_consen 2 NYEGCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEKAGGCIN 44 (54)
T ss_pred CccCccChhhCCcccCCCCEEECCCCCCcccHHHHhhCCceEe
Confidence 456778888887775 333 4666765556778888888873
Done!