Query psy4720
Match_columns 95
No_of_seqs 143 out of 1022
Neff 7.6
Searched_HMMs 29240
Date Sat Aug 17 00:06:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4720.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4720hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1klo_A Laminin; glycoprotein; 99.7 1.8E-18 6E-23 114.8 5.1 85 7-93 51-151 (162)
2 1klo_A Laminin; glycoprotein; 99.5 4.5E-15 1.5E-19 98.3 3.4 76 12-93 1-96 (162)
3 2y38_A Laminin subunit alpha-5 99.4 9.1E-14 3.1E-18 103.5 5.2 79 10-93 264-378 (403)
4 4aqt_A Laminin subunit gamma-1 99.4 8.9E-14 3.1E-18 102.8 3.0 82 10-93 253-355 (375)
5 4aqs_A Laminin subunit beta-1; 99.2 4.3E-12 1.5E-16 96.4 4.3 81 6-88 435-525 (525)
6 4aqs_A Laminin subunit beta-1; 99.0 4.1E-10 1.4E-14 85.5 6.4 84 8-93 377-480 (525)
7 2gy5_A Angiopoietin-1 receptor 98.9 1.5E-09 5.2E-14 81.1 5.5 84 4-93 193-284 (423)
8 3zyj_B Netrin-G1; cell adhesio 98.8 9.5E-10 3.2E-14 82.4 2.7 64 8-74 293-374 (426)
9 2gy5_A Angiopoietin-1 receptor 98.8 5.2E-09 1.8E-13 78.2 5.4 65 22-90 256-322 (423)
10 4aqt_A Laminin subunit gamma-1 98.5 3.9E-08 1.3E-12 72.6 2.8 56 5-60 304-369 (375)
11 3zyj_B Netrin-G1; cell adhesio 98.4 9.1E-08 3.1E-12 71.7 1.6 63 5-75 350-416 (426)
12 2y38_A Laminin subunit alpha-5 98.3 5.2E-07 1.8E-11 67.3 3.6 49 5-53 318-382 (403)
13 2vj3_A Neurogenic locus notch 97.3 0.00034 1.2E-08 44.0 4.7 20 24-43 21-42 (135)
14 3k6s_B Integrin beta-2; cell r 97.2 0.00016 5.5E-09 57.0 3.0 75 9-87 423-513 (687)
15 3k6s_B Integrin beta-2; cell r 97.2 0.00031 1.1E-08 55.4 4.4 54 28-89 537-593 (687)
16 2vj2_A Jagged-1; signalling, p 97.0 0.00051 1.8E-08 44.9 3.6 20 23-43 45-64 (169)
17 2ygq_A WIF-1, WNT inhibitory f 96.9 0.00096 3.3E-08 48.0 4.2 16 28-43 196-211 (324)
18 3fcs_B Integrin beta-3; beta p 96.8 0.00078 2.7E-08 53.1 3.3 26 60-89 575-601 (690)
19 2vj2_A Jagged-1; signalling, p 96.8 0.00072 2.5E-08 44.2 2.7 60 24-87 79-168 (169)
20 2ygq_A WIF-1, WNT inhibitory f 96.7 0.0019 6.5E-08 46.5 4.4 59 24-87 161-243 (324)
21 3tbd_A Netrin-G2, laminet-2; l 96.6 0.00074 2.5E-08 49.3 2.0 41 10-53 268-310 (338)
22 3fcs_B Integrin beta-3; beta p 96.6 0.0011 3.8E-08 52.3 2.8 57 28-87 457-522 (690)
23 4d90_A EGF-like repeat and dis 96.6 0.0021 7.3E-08 40.2 3.6 15 30-44 24-38 (143)
24 2p28_B Integrin beta-2; hybrid 96.2 0.0011 3.8E-08 45.4 0.8 55 28-87 106-174 (217)
25 2wg3_C Hedgehog-interacting pr 95.2 0.0056 1.9E-07 45.9 1.2 53 23-88 403-455 (463)
26 1edm_B Factor IX; epidermal gr 93.5 0.079 2.7E-06 26.0 3.0 33 7-43 4-38 (39)
27 2c4f_L Coagulation factor VII 92.9 0.028 9.6E-07 35.5 0.8 34 7-44 48-83 (142)
28 3tbd_A Netrin-G2, laminet-2; l 92.8 0.029 9.8E-07 40.9 0.9 38 55-94 267-307 (338)
29 3fl7_A Ephrin receptor; ATP-bi 92.7 0.067 2.3E-06 40.9 2.8 53 24-77 258-316 (536)
30 1tpg_A T-plasminogen activator 92.7 0.042 1.5E-06 32.2 1.3 26 60-87 56-85 (91)
31 2p28_B Integrin beta-2; hybrid 90.2 0.14 4.6E-06 34.9 2.0 50 28-88 153-214 (217)
32 1a3p_A Epidermal growth factor 89.8 0.28 9.4E-06 24.9 2.6 16 28-43 25-40 (45)
33 3u7u_G Neuregulin 1; signaling 88.6 0.43 1.5E-05 25.6 2.9 34 7-44 9-49 (55)
34 1x7a_L Coagulation factor IX, 87.5 0.88 3E-05 28.7 4.3 21 23-43 61-83 (146)
35 1k36_A Epiregulin; EGF-like fo 87.5 0.3 1E-05 25.1 1.7 16 29-44 28-43 (46)
36 1egf_A Epidermal growth factor 85.6 1.2 4.2E-05 23.1 3.7 22 29-50 29-50 (53)
37 3ltf_D Protein spitz; receptor 82.7 0.77 2.6E-05 24.7 2.0 15 30-44 34-48 (58)
38 3ca7_A Protein spitz; argos, E 82.1 0.65 2.2E-05 24.2 1.6 15 30-44 34-48 (52)
39 1iox_A Betacellulin; EGF-like 81.9 0.59 2E-05 24.6 1.3 16 29-44 30-45 (50)
40 1nql_B Epidermal growth factor 81.6 0.65 2.2E-05 24.5 1.5 18 29-46 29-46 (53)
41 2vj3_A Neurogenic locus notch 81.4 0.68 2.3E-05 28.5 1.7 41 44-87 69-118 (135)
42 1hae_A Heregulin-alpha; growth 81.0 0.54 1.9E-05 25.4 1.0 16 28-43 31-46 (63)
43 3e50_C Protransforming growth 80.5 0.78 2.7E-05 24.2 1.5 16 29-44 30-45 (50)
44 2rnl_A Amphiregulin; AR, color 78.8 1.1 3.9E-05 23.5 1.8 16 29-44 34-49 (50)
45 4fhq_A Tumor necrosis factor r 76.6 0.83 2.8E-05 28.7 1.0 39 39-77 36-87 (134)
46 2ygo_A WIF-1, WNT inhibitory f 71.4 2.5 8.6E-05 28.3 2.4 22 23-45 160-181 (188)
47 4d90_A EGF-like repeat and dis 70.9 3.7 0.00012 25.0 3.0 15 29-43 80-94 (143)
48 2ygo_A WIF-1, WNT inhibitory f 70.6 2.4 8.4E-05 28.3 2.2 28 59-89 154-181 (188)
49 2k2s_B Micronemal protein 6; m 65.9 1.9 6.7E-05 23.4 0.8 20 24-43 27-49 (61)
50 1xdt_R Hbegf, heparin-binding 65.8 2.6 8.9E-05 24.3 1.4 15 29-43 62-76 (79)
51 1aut_L Activated protein C; se 64.9 4.2 0.00014 24.1 2.3 22 23-44 27-50 (114)
52 3tje_F Tumor necrosis factor r 63.5 2.9 9.9E-05 26.9 1.4 39 40-78 64-116 (156)
53 1g1s_A P-selectin; selectin, l 62.5 3.4 0.00012 25.7 1.6 14 30-43 141-154 (162)
54 1yo8_A Thrombospondin-2; EGF, 59.0 11 0.00037 29.5 4.2 33 7-43 4-42 (634)
55 1jma_B Herpesvirus entry media 55.5 6.5 0.00022 25.2 2.0 20 39-58 34-58 (167)
56 2e26_A Reelin, reeler protein; 53.1 1.5 5.2E-05 34.9 -1.5 26 58-87 539-564 (725)
57 2fd6_A Urokinase-type plasmino 52.8 9 0.00031 23.3 2.3 14 30-43 20-33 (122)
58 2bou_A EGF-like module contain 52.5 11 0.00038 22.9 2.7 66 23-91 60-138 (143)
59 3me4_A Tumor necrosis factor r 52.3 6.4 0.00022 26.5 1.7 46 32-77 48-115 (216)
60 1z1y_A Ookinete surface protei 52.0 1.7 5.9E-05 27.9 -1.2 51 30-88 117-175 (186)
61 2i9a_A Urokinase-type plasmino 50.2 11 0.00038 23.7 2.5 29 11-43 12-45 (145)
62 3qd6_R CD40L receptor, tumor n 48.7 11 0.00036 24.4 2.2 51 40-90 37-100 (177)
63 3v4v_B Integrin beta-7; cell a 48.3 3.4 0.00011 31.6 -0.3 35 8-43 454-493 (503)
64 2p26_A Integrin beta-2; hybrid 47.4 7.8 0.00027 27.2 1.5 15 29-43 207-221 (280)
65 2wg3_C Hedgehog-interacting pr 47.0 4.5 0.00015 30.1 0.3 20 24-44 436-455 (463)
66 2vh0_B Activated factor XA lig 46.2 4.2 0.00015 24.9 0.0 14 30-43 64-77 (134)
67 2e26_A Reelin, reeler protein; 45.2 5.4 0.00019 31.8 0.5 25 13-43 540-564 (725)
68 3t3p_B Integrin beta-3; integr 44.0 7.4 0.00025 29.5 1.0 34 9-43 433-472 (472)
69 3h5c_B Vitamin K-dependent pro 42.1 21 0.00072 24.5 3.1 34 6-43 5-40 (317)
70 1nfu_B Coagulation factor XA, 40.4 5.9 0.0002 26.3 0.0 14 30-43 64-77 (195)
71 3u3p_A Tumor necrosis factor r 34.1 19 0.00065 25.8 1.8 20 40-59 45-69 (313)
72 2hey_R Tumor necrosis factor r 32.7 20 0.00069 22.2 1.6 30 29-58 81-120 (146)
73 1g1t_A E-selectin; EGF, adhesi 31.8 20 0.00068 21.8 1.5 14 30-43 141-154 (157)
74 3cfw_A L-selectin; EGF, cell a 30.9 23 0.00077 21.8 1.6 16 28-43 139-154 (164)
75 1sg1_X Tumor necrosis factor r 29.1 32 0.0011 21.5 2.1 44 7-50 53-105 (161)
76 3fl7_A Ephrin receptor; ATP-bi 26.0 14 0.00049 28.0 0.0 32 61-92 253-284 (536)
77 1q4g_A Prostaglandin G/H synth 24.8 45 0.0015 25.5 2.6 34 7-44 3-40 (553)
78 3k51_B Decoy receptor 3; DCR3, 22.4 40 0.0014 21.7 1.7 38 40-77 41-90 (176)
79 3nt1_A Prostaglandin-endoperox 22.4 53 0.0018 25.4 2.6 34 7-44 2-39 (587)
80 3g5c_A ADAM 22; alpha/beta fol 22.3 37 0.0013 25.7 1.7 27 13-44 455-481 (510)
81 2uwi_A CRME protein; receptor, 21.6 43 0.0015 20.7 1.7 21 39-59 35-60 (142)
No 1
>1klo_A Laminin; glycoprotein; 2.10A {Mus musculus} SCOP: g.3.11.2 g.3.11.2 g.3.11.2 PDB: 1npe_B 1tle_A
Probab=99.74 E-value=1.8e-18 Score=114.83 Aligned_cols=85 Identities=28% Similarity=0.693 Sum_probs=74.9
Q ss_pred CCCccCCCCCCCCCC--CccccCCceee-cCCCccCCCCCCCCCCccCCC-------CceeccCCCCC------CCCCCC
Q psy4720 7 HEALPCQCDIDGSKS--FECEQFGGQCQ-CKPNVIGRRCEMCATGYYGFP-------DCHPCNCPFTA------VCDSYT 70 (95)
Q Consensus 7 ~~C~~C~C~~~gs~~--~~C~~~~G~C~-C~~g~~G~~C~~C~~G~~g~~-------~C~~C~C~~~~------~C~~~t 70 (95)
..|++|+|+..+... ..|++.+|+|+ |+++|+|++|++|++||||++ .|++|.|+..+ .||+++
T Consensus 51 ~~C~~C~C~~~~~~~~~~~C~~~tG~C~~C~~g~~G~~Ce~C~~Gy~g~~~~~~~~~~C~~C~C~~~Gs~~~~~~Cd~~t 130 (162)
T 1klo_A 51 RLCRPCQCNDNIDPNAVGNCNRLTGECLKCIYNTAGFYCDRCKEGFFGNPLAPNPADKCKACACNPYGTVQQQSSCNPVT 130 (162)
T ss_dssp EEEEECCSTTCBCTTCSCCBCTTTCCBCCBCTTEETTTTCEECTTEEECTTCSSGGGSEEECCCCTTTBGGGCCCCCTTT
T ss_pred CCCeeCcCCCCCCcccCCcccCCCCcccCCCCCCcCCCcCcCchhhcCCccccCCCCCCeeccCCCCCccCCCCCCCCCC
Confidence 468999999875432 46999999995 999999999999999999975 47899999853 899999
Q ss_pred CceeccCCCccccCCCCcCCCCC
Q psy4720 71 GKLAQVLIQVVTFPNYPSCKLWY 93 (95)
Q Consensus 71 G~C~c~~~~~~~~~~c~~c~~~~ 93 (95)
|+|+|++ +|+|.+|++|+++|
T Consensus 131 G~C~C~~--g~~G~~Cd~C~~g~ 151 (162)
T 1klo_A 131 GQCQCLP--HVSGRDCGTCDPGY 151 (162)
T ss_dssp CCCCBCT--TEESTTCCEECTTC
T ss_pred CEeECCC--CCcCCCCCCCCCCc
Confidence 9999998 99999999999988
No 2
>1klo_A Laminin; glycoprotein; 2.10A {Mus musculus} SCOP: g.3.11.2 g.3.11.2 g.3.11.2 PDB: 1npe_B 1tle_A
Probab=99.52 E-value=4.5e-15 Score=98.35 Aligned_cols=76 Identities=32% Similarity=0.760 Sum_probs=64.6
Q ss_pred CCCCCCCCCCCccccCC----cee-ecCCCccCCCCCCCCCCccCCC--------CceeccCCCC------CCCCCCCCc
Q psy4720 12 CQCDIDGSKSFECEQFG----GQC-QCKPNVIGRRCEMCATGYYGFP--------DCHPCNCPFT------AVCDSYTGK 72 (95)
Q Consensus 12 C~C~~~gs~~~~C~~~~----G~C-~C~~g~~G~~C~~C~~G~~g~~--------~C~~C~C~~~------~~C~~~tG~ 72 (95)
|.|...++ |+..+ ++| .|+++|+|.+|++|++||||.+ .|++|+|+++ +.|++++|+
T Consensus 1 C~C~~~g~----C~~~~~~g~~~C~~C~~g~~G~~Ce~C~~g~~g~~~~~~~~~~~C~~C~C~~~~~~~~~~~C~~~tG~ 76 (162)
T 1klo_A 1 CPCPGGSS----CAIVPKTKEVVCTHCPTGTAGKRCELCDDGYFGDPLGSNGPVRLCRPCQCNDNIDPNAVGNCNRLTGE 76 (162)
T ss_dssp CCSCTTCC----EEECSSSCCEEECSCCTTEESTTSCEECTTEEEETTCTTSSCEEEEECCSTTCBCTTCSCCBCTTTCC
T ss_pred CcCcCcCc----ccccCCCCCEEeCCCCCCCcCCCCcCCCCCCcCCcccccCCCCCCeeCcCCCCCCcccCCcccCCCCc
Confidence 45666654 76544 689 6999999999999999999965 4799999976 579999999
Q ss_pred ee-ccCCCccccCCCCcCCCCC
Q psy4720 73 LA-QVLIQVVTFPNYPSCKLWY 93 (95)
Q Consensus 73 C~-c~~~~~~~~~~c~~c~~~~ 93 (95)
|+ |+. +++|.+|++|+++|
T Consensus 77 C~~C~~--g~~G~~Ce~C~~Gy 96 (162)
T 1klo_A 77 CLKCIY--NTAGFYCDRCKEGF 96 (162)
T ss_dssp BCCBCT--TEETTTTCEECTTE
T ss_pred ccCCCC--CCcCCCcCcCchhh
Confidence 96 988 99999999999987
No 3
>2y38_A Laminin subunit alpha-5; structural protein, cell adhesion, basement membrane; HET: NAG; 2.90A {Mus musculus}
Probab=99.43 E-value=9.1e-14 Score=103.54 Aligned_cols=79 Identities=30% Similarity=0.620 Sum_probs=66.7
Q ss_pred ccCCCCCCCCCCCcccc------CCceeecCCCccCCCCCCCCCCccCCC----------CceeccCCCCC-CC--C---
Q psy4720 10 LPCQCDIDGSKSFECEQ------FGGQCQCKPNVIGRRCEMCATGYYGFP----------DCHPCNCPFTA-VC--D--- 67 (95)
Q Consensus 10 ~~C~C~~~gs~~~~C~~------~~G~C~C~~g~~G~~C~~C~~G~~g~~----------~C~~C~C~~~~-~C--~--- 67 (95)
.+|+|++++. .|+. ..|+|.|++++.|.+|++|.+||||.+ .|++|+|++++ .| |
T Consensus 264 g~C~CnGHA~---~C~~~~~~~~~~g~C~C~hnT~G~~CErC~pGy~g~p~~~at~~~~~~C~pC~Cnghs~~C~~d~~~ 340 (403)
T 2y38_A 264 GRCVCHGHAD---VCDAKDPLDPFRLQCACQHNTCGGSCDRCCPGFNQQPWKPATTDSANECQSCNCHGHAYDCYYDPEV 340 (403)
T ss_dssp EECCCTTBCS---CEEESCTTSTTCEEECCCTTEESSSCCEECTTCCSSCCCCCCSSCCCCCCCCCCTTSCSCEEECHHH
T ss_pred cccccCCCcc---ccCCCCCCCccceEeECcCcCcCCCCCCCCccccCCcccccccCCCccccccccCCCCcccccCccc
Confidence 4689998876 3653 357899999999999999999999874 69999999874 46 2
Q ss_pred -------------CCCCcee-ccCCCccccCCCCcCCCCC
Q psy4720 68 -------------SYTGKLA-QVLIQVVTFPNYPSCKLWY 93 (95)
Q Consensus 68 -------------~~tG~C~-c~~~~~~~~~~c~~c~~~~ 93 (95)
..+|+|. |+. ++.|.+|++|++||
T Consensus 341 ~~~~~s~~~~~~~~~~G~C~~C~~--nt~G~~CErC~~GY 378 (403)
T 2y38_A 341 DRREASQNQDNVYQGGGVCLDCQH--HTTGINCERCLPGF 378 (403)
T ss_dssp HHTTCCCCTTSCSCCCEEESSCCS--SEESTTSCEECTTC
T ss_pred ccccccccccccCCCCCCCCCCcC--cCcCCCCCcCCCCc
Confidence 4689997 887 99999999999998
No 4
>4aqt_A Laminin subunit gamma-1; cell adhesion; HET: NAG BMA; 3.20A {Mus musculus}
Probab=99.40 E-value=8.9e-14 Score=102.80 Aligned_cols=82 Identities=23% Similarity=0.446 Sum_probs=68.9
Q ss_pred ccCCCCCCCCCCCccccCCceeecCCCccCCCCCCCCCCccCCC----------CceeccCCCCC----------CCCCC
Q psy4720 10 LPCQCDIDGSKSFECEQFGGQCQCKPNVIGRRCEMCATGYYGFP----------DCHPCNCPFTA----------VCDSY 69 (95)
Q Consensus 10 ~~C~C~~~gs~~~~C~~~~G~C~C~~g~~G~~C~~C~~G~~g~~----------~C~~C~C~~~~----------~C~~~ 69 (95)
..|.|+.+++....++...+.|.|++++.|..|++|.+|||+++ .|++|+|+.++ .|+..
T Consensus 253 g~C~Cngh~s~c~~~~~~~~~C~C~~nt~G~~Ce~C~~gy~~~p~~~g~~~~~~~C~~C~Cn~~g~~C~~d~~~~~c~~~ 332 (375)
T 4aqt_A 253 GRCKCNGHASECVKNEFDKLMCNCKHNTYGVDCEKCLPFFNDRPWRRATAESASECLPCDCNGRSQECYFDPELYRSTGH 332 (375)
T ss_dssp EEECCTTSCSCEEECTTSCEEECCCTTEESTTSCEECTTCCSSCCCCCCSSCCCCCCCCCGGGSCSCEEECHHHHHHSSC
T ss_pred ceecCCCCCcccCCCCCCCeeeeCcCCCcCCCcccCCCCCcCCCCCCCccCCCCCCCCCcCcCCCCCcccccccCccCCC
Confidence 46889999886544555667889999999999999999999975 58999998753 24678
Q ss_pred CCcee-ccCCCccccCCCCcCCCCC
Q psy4720 70 TGKLA-QVLIQVVTFPNYPSCKLWY 93 (95)
Q Consensus 70 tG~C~-c~~~~~~~~~~c~~c~~~~ 93 (95)
+|+|. |+. +++|.+|++|++||
T Consensus 333 ~G~C~~C~~--n~~G~~Ce~C~~Gy 355 (375)
T 4aqt_A 333 GGHCTNCRD--NTDGAKCERCRENF 355 (375)
T ss_dssp CEEECSCTT--TEESTTSCEECSSE
T ss_pred CCCCCCCCC--CCcCCCCCCCCcCc
Confidence 99995 888 89999999999997
No 5
>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A {Mus musculus}
Probab=99.24 E-value=4.3e-12 Score=96.41 Aligned_cols=81 Identities=25% Similarity=0.621 Sum_probs=33.5
Q ss_pred CCCCccCCCCCCCCCC--CccccCCceeecCCCccCCCCCCCCCCccCCC----CceeccCCCC----CCCCCCCCceec
Q psy4720 6 LHEALPCQCDIDGSKS--FECEQFGGQCQCKPNVIGRRCEMCATGYYGFP----DCHPCNCPFT----AVCDSYTGKLAQ 75 (95)
Q Consensus 6 ~~~C~~C~C~~~gs~~--~~C~~~~G~C~C~~g~~G~~C~~C~~G~~g~~----~C~~C~C~~~----~~C~~~tG~C~c 75 (95)
...|.+|.|+..++.. ..|+..+|+|.|+++|+|..|++|++||||+. .|++|.|++. ..|+..+|+|.|
T Consensus 435 ~~~C~~C~C~~~gtc~~~~~Cd~~tg~C~C~~g~~G~~Ce~C~~G~~g~~~~~~~C~~C~C~~~gs~~~~C~~~tG~C~C 514 (525)
T 4aqs_A 435 PYGCKSCACNPLGTIPGGNPCDSETGYCYCKRLVTGQRCDQCLPQHWGLSNDLDGCRPCDCDLGGALNNSCSEDSGQCSC 514 (525)
T ss_dssp TTSSEECCCCTTTBCCSSCCBCTTTCCBCBCTTCCSTTTCC---------------------------------------
T ss_pred CCCCccCCCCCCceecCCCcccCCCCEEECCCCCcCCCcccCCCCccCCCCCCCCCcCCCCCCCCccCCccCCCCCeeEC
Confidence 3468889999888753 46889999999999999999999999999965 5889999875 368889999999
Q ss_pred cCCCccccCCCCc
Q psy4720 76 VLIQVVTFPNYPS 88 (95)
Q Consensus 76 ~~~~~~~~~~c~~ 88 (95)
++ +++|.+|++
T Consensus 515 ~~--G~~G~~Ceq 525 (525)
T 4aqs_A 515 LP--HMIGRQCNE 525 (525)
T ss_dssp -------------
T ss_pred CC--CCcCCCCCC
Confidence 98 999999874
No 6
>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A {Mus musculus}
Probab=99.02 E-value=4.1e-10 Score=85.53 Aligned_cols=84 Identities=36% Similarity=0.735 Sum_probs=63.1
Q ss_pred CCccCCCCCCCCCC---------CccccCCceeecCCCccCCCCCCCCCCccCCC-----CceeccCCCC------CCCC
Q psy4720 8 EALPCQCDIDGSKS---------FECEQFGGQCQCKPNVIGRRCEMCATGYYGFP-----DCHPCNCPFT------AVCD 67 (95)
Q Consensus 8 ~C~~C~C~~~gs~~---------~~C~~~~G~C~C~~g~~G~~C~~C~~G~~g~~-----~C~~C~C~~~------~~C~ 67 (95)
.+.+|.|+..+... ..++...+.|.|++++.|.+|++|++||||.. .|.+|.|+.. +.|+
T Consensus 377 ~~~~C~C~~~~~~~~~~C~~~~~~~~~~~~~~C~C~~g~~G~~C~~C~~Gy~G~~c~~~~~C~~C~C~~~gtc~~~~~Cd 456 (525)
T 4aqs_A 377 LCEPCTCDPAGSENGGICDGYTDFSVGLIAGQCRCKLHVEGERCDVCKEGFYDLSAEDPYGCKSCACNPLGTIPGGNPCD 456 (525)
T ss_dssp CEEECCCCTTTBSGGGCCCCSCBGGGTBCSSCCCBCTTEETTTTCEECTTEECCCTTSTTSSEECCCCTTTBCCSSCCBC
T ss_pred CCcCCCCCCCCCCCCccccCCCCCCcCCCCCccCCCCCCCCCcccCCCCCCcCCCCCCCCCCccCCCCCCceecCCCccc
Confidence 45667777665432 12344568899999999999999999999975 5888888764 4688
Q ss_pred CCCCceeccCCCccccCCCCcCCCCC
Q psy4720 68 SYTGKLAQVLIQVVTFPNYPSCKLWY 93 (95)
Q Consensus 68 ~~tG~C~c~~~~~~~~~~c~~c~~~~ 93 (95)
+.+|+|.|+. +++|.+|++|+++|
T Consensus 457 ~~tg~C~C~~--g~~G~~Ce~C~~G~ 480 (525)
T 4aqs_A 457 SETGYCYCKR--LVTGQRCDQCLPQH 480 (525)
T ss_dssp TTTCCBCBCT--TCCSTTTCC-----
T ss_pred CCCCEEECCC--CCcCCCcccCCCCc
Confidence 8999999998 99999999999887
No 7
>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET: NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*
Probab=98.90 E-value=1.5e-09 Score=81.05 Aligned_cols=84 Identities=21% Similarity=0.407 Sum_probs=64.0
Q ss_pred cCCCCCcc-C-CCCCCCCCCCccccCCceeecCCCccCCCCCC-CCCCccCCCCceeccCC----CCCCCCCCCCceecc
Q psy4720 4 SFLHEALP-C-QCDIDGSKSFECEQFGGQCQCKPNVIGRRCEM-CATGYYGFPDCHPCNCP----FTAVCDSYTGKLAQV 76 (95)
Q Consensus 4 ~~~~~C~~-C-~C~~~gs~~~~C~~~~G~C~C~~g~~G~~C~~-C~~G~~g~~~C~~C~C~----~~~~C~~~tG~C~c~ 76 (95)
++...|.. | .|...| .|+..+++|.|++||.|..|+. |.++|||...-.+|.++ .++.|++.+++|.|.
T Consensus 193 ~~G~~C~~~C~~C~~~G----~C~~~~g~C~C~~G~~G~~Ce~~C~~g~~g~~C~~~C~~~~~C~~~g~C~~~~~~C~C~ 268 (423)
T 2gy5_A 193 KWGPECNHLCTACMNNG----VCHEDTGECICPPGFMGRTCEKACELHTFGRTCKERCSGQEGCKSYVFCLPDPYGCSCA 268 (423)
T ss_dssp EESTTSCEECCCCCTTC----EECTTTCCEECCTTEESTTSCEECCTTEESTTSCEECCSTTTTTTCCEEETTTTEEECC
T ss_pred CCCCCCCCCCCCCCCCC----EEECCCCcEeCCCCccCCCcccccCCCCCCCCcCccCCCCCCCCCCCEECCCCCeEEeC
Confidence 44555632 3 255554 4887789999999999999996 99999996522367633 346788889999998
Q ss_pred CCCccccCCCCc-CCCCC
Q psy4720 77 LIQVVTFPNYPS-CKLWY 93 (95)
Q Consensus 77 ~~~~~~~~~c~~-c~~~~ 93 (95)
. ++.|.+|+. |.++|
T Consensus 269 ~--G~~G~~C~~~C~~G~ 284 (423)
T 2gy5_A 269 T--GWKGLQCNEACHPGF 284 (423)
T ss_dssp B--TCBSGGGCBCCCTTB
T ss_pred C--CcccccccCccCCCC
Confidence 8 899999996 88876
No 8
>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.85 E-value=9.5e-10 Score=82.44 Aligned_cols=64 Identities=27% Similarity=0.620 Sum_probs=41.6
Q ss_pred CCccCCCCCCCCCCCccccCC--ceeecCCCccCCCCCCCCCCccCCC---------------CceeccCCCCC-CCCCC
Q psy4720 8 EALPCQCDIDGSKSFECEQFG--GQCQCKPNVIGRRCEMCATGYYGFP---------------DCHPCNCPFTA-VCDSY 69 (95)
Q Consensus 8 ~C~~C~C~~~gs~~~~C~~~~--G~C~C~~g~~G~~C~~C~~G~~g~~---------------~C~~C~C~~~~-~C~~~ 69 (95)
...+|.|+++++ .|++.+ ++|.|++++.|+.|++|.+|||+.+ .|++|+|+.++ .||+.
T Consensus 293 v~g~C~CnGHas---~C~~~~g~~~C~C~~~ttG~~CE~C~pgy~~~P~~~gt~~p~~~g~~~~C~pC~Cn~~g~~CD~~ 369 (426)
T 3zyj_B 293 VRGRCKCNLHAT---VCVYDNSKLTCECEHNTTGPDCGKCKKNYQGRPWSPGSYLPIPKGAANACIPSISSIGTNVCDNE 369 (426)
T ss_dssp CEEEECCSSSCS---CEEEETTEEEECCCTTEESSSSCEECTTCCSSCCCCCBCCSSSSCBCCCCCCCCC----------
T ss_pred ccccCcCCCchh---hcCCCCCCceeeCCCCCcCCCccccccccccCcccCCcccccCCCCCCcccCCCCCCCcCccccC
Confidence 456899999887 477654 4999999999999999999998653 38889998753 68877
Q ss_pred CCcee
Q psy4720 70 TGKLA 74 (95)
Q Consensus 70 tG~C~ 74 (95)
++.|.
T Consensus 370 t~~C~ 374 (426)
T 3zyj_B 370 LLHCQ 374 (426)
T ss_dssp -----
T ss_pred cccCC
Confidence 77765
No 9
>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET: NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*
Probab=98.80 E-value=5.2e-09 Score=78.16 Aligned_cols=65 Identities=25% Similarity=0.509 Sum_probs=56.3
Q ss_pred CccccCCceeecCCCccCCCCCC-CCCCccCCCCce-eccCCCCCCCCCCCCceeccCCCccccCCCCcCC
Q psy4720 22 FECEQFGGQCQCKPNVIGRRCEM-CATGYYGFPDCH-PCNCPFTAVCDSYTGKLAQVLIQVVTFPNYPSCK 90 (95)
Q Consensus 22 ~~C~~~~G~C~C~~g~~G~~C~~-C~~G~~g~~~C~-~C~C~~~~~C~~~tG~C~c~~~~~~~~~~c~~c~ 90 (95)
..|++.+++|.|+++|.|..|+. |.+||+|. .|. +|.|.+++.|+..++ |.|.. ++.|.+|+.+.
T Consensus 256 g~C~~~~~~C~C~~G~~G~~C~~~C~~G~~G~-~C~~~C~C~ngg~C~~~~~-C~C~~--G~~G~~Ce~~~ 322 (423)
T 2gy5_A 256 VFCLPDPYGCSCATGWKGLQCNEACHPGFYGP-DCKLRCSCNNGEMCDRFQG-CLCSP--GWQGLQCEREG 322 (423)
T ss_dssp CEEETTTTEEECCBTCBSGGGCBCCCTTBCSB-TTCCBCCCTTCCEEETTTE-EECCT--TCBSTTSCBCS
T ss_pred CEECCCCCeEEeCCCcccccccCccCCCCcCC-cccccccCCCCCEecCCCc-eECCC--CCcCCCCccCc
Confidence 35777789999999999999996 99999994 454 788998889998877 99988 99999999873
No 10
>4aqt_A Laminin subunit gamma-1; cell adhesion; HET: NAG BMA; 3.20A {Mus musculus}
Probab=98.51 E-value=3.9e-08 Score=72.64 Aligned_cols=56 Identities=29% Similarity=0.841 Sum_probs=43.9
Q ss_pred CCCCCccCCCCCCCCCC------CccccCCcee-ecCCCccCCCCCCCCCCccCCC---CceeccC
Q psy4720 5 FLHEALPCQCDIDGSKS------FECEQFGGQC-QCKPNVIGRRCEMCATGYYGFP---DCHPCNC 60 (95)
Q Consensus 5 ~~~~C~~C~C~~~gs~~------~~C~~~~G~C-~C~~g~~G~~C~~C~~G~~g~~---~C~~C~C 60 (95)
....|++|+|++.++.. ..|+..+|+| .|++|++|.+|++|++||||++ .|++|.-
T Consensus 304 ~~~~C~~C~Cn~~g~~C~~d~~~~~c~~~~G~C~~C~~n~~G~~Ce~C~~Gyyg~~~~~~C~pCaA 369 (375)
T 4aqt_A 304 SASECLPCDCNGRSQECYFDPELYRSTGHGGHCTNCRDNTDGAKCERCRENFFRLGNTEACSPAAA 369 (375)
T ss_dssp CCCCCCCCCGGGSCSCEEECHHHHHHSSCCEEECSCTTTEESTTSCEECSSEECCTTCSSCEEC--
T ss_pred CCCCCCCCcCcCCCCCcccccccCccCCCCCCCCCCCCCCcCCCCCCCCcCcccCcCCCCCcCCcC
Confidence 34579999999888742 2356678999 5999999999999999999986 4677653
No 11
>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.37 E-value=9.1e-08 Score=71.73 Aligned_cols=63 Identities=30% Similarity=0.648 Sum_probs=8.0
Q ss_pred CCCCCccCCCCCCCCCCCccccCCceee----cCCCccCCCCCCCCCCccCCCCceeccCCCCCCCCCCCCceec
Q psy4720 5 FLHEALPCQCDIDGSKSFECEQFGGQCQ----CKPNVIGRRCEMCATGYYGFPDCHPCNCPFTAVCDSYTGKLAQ 75 (95)
Q Consensus 5 ~~~~C~~C~C~~~gs~~~~C~~~~G~C~----C~~g~~G~~C~~C~~G~~g~~~C~~C~C~~~~~C~~~tG~C~c 75 (95)
....|++|+|+..+. .|++.++.|. |..++ +| +|++||+|. .|+.|.|.+.+.|+..+|+|.-
T Consensus 350 ~~~~C~pC~Cn~~g~---~CD~~t~~C~ngg~C~~~~---~C-~C~~G~~G~-~Ce~c~C~~~g~C~~~~Gqc~~ 416 (426)
T 3zyj_B 350 AANACIPSISSIGTN---VCDNELLHCQNGGTCHNNV---RC-LCPAAYTGI-LCEKLRCEEAGSCGSDSGQGAP 416 (426)
T ss_dssp BCCCCCCCCC-----------------------------------------------------------------
T ss_pred CCCcccCCCCCCCcC---ccccCcccCCCCCCcCCCC---CC-cCCCCCcCC-CCcCCCCCCCCcccCCCCccCC
Confidence 456799999988765 5998888886 88877 88 999999995 4999999998999999999983
No 12
>2y38_A Laminin subunit alpha-5; structural protein, cell adhesion, basement membrane; HET: NAG; 2.90A {Mus musculus}
Probab=98.26 E-value=5.2e-07 Score=67.26 Aligned_cols=49 Identities=29% Similarity=0.640 Sum_probs=39.0
Q ss_pred CCCCCccCCCCCCCCCC---------------CccccCCceee-cCCCccCCCCCCCCCCccCCC
Q psy4720 5 FLHEALPCQCDIDGSKS---------------FECEQFGGQCQ-CKPNVIGRRCEMCATGYYGFP 53 (95)
Q Consensus 5 ~~~~C~~C~C~~~gs~~---------------~~C~~~~G~C~-C~~g~~G~~C~~C~~G~~g~~ 53 (95)
..+.|++|+|++++..- ..+...+|+|. |++++.|.+|++|++||||.+
T Consensus 318 ~~~~C~pC~Cnghs~~C~~d~~~~~~~~s~~~~~~~~~~G~C~~C~~nt~G~~CErC~~GYyg~p 382 (403)
T 2y38_A 318 SANECQSCNCHGHAYDCYYDPEVDRREASQNQDNVYQGGGVCLDCQHHTTGINCERCLPGFFRAP 382 (403)
T ss_dssp CCCCCCCCCCTTSCSCEEECHHHHHTTCCCCTTSCSCCCEEESSCCSSEESTTSCEECTTCEECT
T ss_pred CCccccccccCCCCcccccCcccccccccccccccCCCCCCCCCCcCcCcCCCCCcCCCCccCCC
Confidence 34689999999887631 01224589995 999999999999999999976
No 13
>2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A*
Probab=97.31 E-value=0.00034 Score=44.00 Aligned_cols=20 Identities=45% Similarity=0.979 Sum_probs=13.8
Q ss_pred cccCCc--eeecCCCccCCCCC
Q psy4720 24 CEQFGG--QCQCKPNVIGRRCE 43 (95)
Q Consensus 24 C~~~~G--~C~C~~g~~G~~C~ 43 (95)
|....| .|.|++||+|..|+
T Consensus 21 C~~~~g~~~C~C~~Gy~G~~C~ 42 (135)
T 2vj3_A 21 CINTLGSFECQCLQGYTGPRCE 42 (135)
T ss_dssp EEECSSSEEEECCTTEESTTSC
T ss_pred eECCCCCEEEECCCCCcCCccc
Confidence 544433 77888888887774
No 14
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B*
Probab=97.23 E-value=0.00016 Score=57.00 Aligned_cols=75 Identities=23% Similarity=0.431 Sum_probs=50.5
Q ss_pred CccCCCCCCCCCCCcccc----CCceeecCCCccCCCCCCCCCCccCCC----Cceecc----CCCCCCCCCCCCceecc
Q psy4720 9 ALPCQCDIDGSKSFECEQ----FGGQCQCKPNVIGRRCEMCATGYYGFP----DCHPCN----CPFTAVCDSYTGKLAQV 76 (95)
Q Consensus 9 C~~C~C~~~gs~~~~C~~----~~G~C~C~~g~~G~~C~~C~~G~~g~~----~C~~C~----C~~~~~C~~~tG~C~c~ 76 (95)
|. |.|......+..|+. ..|.|.|++||+|.+|+ |..++++.+ .|.... |.+++.|. .|+|.|.
T Consensus 423 C~-C~C~~~~~~s~~Cs~~G~C~~g~C~C~~Gy~G~~Ce-c~~~~~~~~~~~~~C~~~~~~~~Cs~~G~C~--~G~C~C~ 498 (687)
T 3k6s_B 423 CE-CRCRDQSRDRSLCHGKGFLECGICRCDTGYIGKNCE-CQTQGRSSQELEGSCRKDNNSIICSGLGDCV--CGQCLCH 498 (687)
T ss_dssp CC-CCCCCSSSCSSTGGGSEEESSSSEEECSSEESTTSC-EESSSCCCSGGGSTTSSSTTSCGGGSSEEEE--TTEEEEC
T ss_pred cc-ccCccCCCCCCCCCCCCEEeCCEeEcCCCCcCCccc-ccCCcCCccccCCCCCCCCCCCcCCCCCEEe--CCEEEcC
Confidence 44 566554433334542 24789999999999998 666666543 354432 66677888 6899998
Q ss_pred C----CCccccCCCC
Q psy4720 77 L----IQVVTFPNYP 87 (95)
Q Consensus 77 ~----~~~~~~~~c~ 87 (95)
. ..++.|..|+
T Consensus 499 ~~~~~~~G~~G~~Ce 513 (687)
T 3k6s_B 499 TSDVPGKLIYGQYCE 513 (687)
T ss_dssp CCCSTTCCEESTTSC
T ss_pred CCCCCCCCccccccc
Confidence 1 1389999987
No 15
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B*
Probab=97.21 E-value=0.00031 Score=55.42 Aligned_cols=54 Identities=22% Similarity=0.576 Sum_probs=39.8
Q ss_pred CceeecCCCccCCCCCCCCCCccCCCCcee---ccCCCCCCCCCCCCceeccCCCccccCCCCcC
Q psy4720 28 GGQCQCKPNVIGRRCEMCATGYYGFPDCHP---CNCPFTAVCDSYTGKLAQVLIQVVTFPNYPSC 89 (95)
Q Consensus 28 ~G~C~C~~g~~G~~C~~C~~G~~g~~~C~~---C~C~~~~~C~~~tG~C~c~~~~~~~~~~c~~c 89 (95)
.|+|.|++||+|..|+ |.... ..|.. ..|.+++.|.. |+|.|.. +++|.+|+.|
T Consensus 537 ~g~C~C~~G~~G~~Ce-c~~~~---~~C~~~~g~~Cs~~G~C~~--g~C~C~~--Gy~G~~Ce~c 593 (687)
T 3k6s_B 537 CGKCRCHPGFEGSACQ-CERTT---EGCLNPRRVECSGRGRCRC--NVCECHS--GYQLPLCQEC 593 (687)
T ss_dssp TTEEEECTTCCSTTSC-SCCSS---CTTBCTTCSBTSSSCCBCS--SCBCCST--TCCTTTTCCC
T ss_pred CCEEEcCCCCcCCCCc-cCCCC---CCCCCCCCCCCCCCCcCCC--CEEECCC--CCcCCCCCCC
Confidence 4789999999999998 33211 12332 25677788875 8999977 8999999875
No 16
>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular, developmental protein, notch signaling pathway, EGF, DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB: 2kb9_A
Probab=97.03 E-value=0.00051 Score=44.89 Aligned_cols=20 Identities=30% Similarity=0.836 Sum_probs=16.1
Q ss_pred ccccCCceeecCCCccCCCCC
Q psy4720 23 ECEQFGGQCQCKPNVIGRRCE 43 (95)
Q Consensus 23 ~C~~~~G~C~C~~g~~G~~C~ 43 (95)
.|+. +++|.|+++|+|..|+
T Consensus 45 ~C~~-~g~C~C~~G~~G~~C~ 64 (169)
T 2vj2_A 45 ACDQ-NGNKTCMEGWMGPECN 64 (169)
T ss_dssp EECS-SCCEEECTTEESTTSC
T ss_pred EeCC-CCeeECCCCCcCCCCC
Confidence 4654 6788999999998886
No 17
>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: PCF NAG FUC SCR; 3.95A {Homo sapiens}
Probab=96.88 E-value=0.00096 Score=48.02 Aligned_cols=16 Identities=38% Similarity=1.028 Sum_probs=8.7
Q ss_pred CceeecCCCccCCCCC
Q psy4720 28 GGQCQCKPNVIGRRCE 43 (95)
Q Consensus 28 ~G~C~C~~g~~G~~C~ 43 (95)
++.|.|++||+|..|+
T Consensus 196 ~~~C~C~~G~~G~~C~ 211 (324)
T 2ygq_A 196 PGFCICPPGFYGVNCD 211 (324)
T ss_dssp SCCEECCTTCBTTTTC
T ss_pred CCEEeCCCCccCCCcc
Confidence 3555555555555553
No 18
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Probab=96.79 E-value=0.00078 Score=53.14 Aligned_cols=26 Identities=15% Similarity=0.221 Sum_probs=18.6
Q ss_pred CCCCCCCCCCCCceec-cCCCccccCCCCcC
Q psy4720 60 CPFTAVCDSYTGKLAQ-VLIQVVTFPNYPSC 89 (95)
Q Consensus 60 C~~~~~C~~~tG~C~c-~~~~~~~~~~c~~c 89 (95)
|.+++.|. .|+|.| .. ++.|.+|+.|
T Consensus 575 C~~~G~C~--~g~C~C~~~--Gy~G~~Ce~C 601 (690)
T 3fcs_B 575 CSGRGKCE--CGSCVCIQP--GSYGDTCEKC 601 (690)
T ss_dssp TSSSCEEE--TTEEECCST--TCBSTTSCBC
T ss_pred CCCCCEEe--CCEEECCCC--CccCCCcCcC
Confidence 45556664 478888 66 8889888874
No 19
>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular, developmental protein, notch signaling pathway, EGF, DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB: 2kb9_A
Probab=96.78 E-value=0.00072 Score=44.19 Aligned_cols=60 Identities=23% Similarity=0.442 Sum_probs=37.6
Q ss_pred cccCCceeecCCCccCCCCCC-------------------CCCCccCCCCce----e----ccCCCCCCCCC---CCCce
Q psy4720 24 CEQFGGQCQCKPNVIGRRCEM-------------------CATGYYGFPDCH----P----CNCPFTAVCDS---YTGKL 73 (95)
Q Consensus 24 C~~~~G~C~C~~g~~G~~C~~-------------------C~~G~~g~~~C~----~----C~C~~~~~C~~---~tG~C 73 (95)
|.. ++.|.|+++|+|..|++ |.+||.|. .|. . ..|.+++.|.. .+++|
T Consensus 79 C~~-~~~C~C~~G~~G~~C~~C~~~~~C~~g~C~~~~~C~C~~G~~G~-~C~~~~~~C~~~~~C~~~g~C~~~~~~~~~C 156 (169)
T 2vj2_A 79 CKL-PGDCRCQYGWQGLYCDKCIPHPGCVHGICNEPWQCLCETNWGGQ-LCDKDLNYCGTHQPCLNGGTCSNTGPDKYQC 156 (169)
T ss_dssp CSS-TTCCEECTTEESSSSCEECCCTTCSSEECSSTTCCEECTTEETT-TTCEESCHHHHTCCCCTTCEEEECSTTCEEE
T ss_pred cCC-CCeeECCCCCCCCCcccCCCCCCCCCCCcCCCCEEeCCCCCCCC-cccCCCCCCCCCCCCCCCCEEcCCCCCCcEe
Confidence 544 57888999999988864 34455553 232 1 23555566654 24677
Q ss_pred eccCCCccccCCCC
Q psy4720 74 AQVLIQVVTFPNYP 87 (95)
Q Consensus 74 ~c~~~~~~~~~~c~ 87 (95)
.|.+ ++.|.+|+
T Consensus 157 ~C~~--G~~G~~Ce 168 (169)
T 2vj2_A 157 SCPE--GYSGPNCE 168 (169)
T ss_dssp ECCT--TCCSTTSC
T ss_pred ECCC--CCcCcCcC
Confidence 7776 77777765
No 20
>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: PCF NAG FUC SCR; 3.95A {Homo sapiens}
Probab=96.68 E-value=0.0019 Score=46.47 Aligned_cols=59 Identities=27% Similarity=0.667 Sum_probs=34.3
Q ss_pred cccCCceeecCCCccCCCCCC--------------------CCCCccCCCCcee--c--cCCCCCCCCCCCCceeccCCC
Q psy4720 24 CEQFGGQCQCKPNVIGRRCEM--------------------CATGYYGFPDCHP--C--NCPFTAVCDSYTGKLAQVLIQ 79 (95)
Q Consensus 24 C~~~~G~C~C~~g~~G~~C~~--------------------C~~G~~g~~~C~~--C--~C~~~~~C~~~tG~C~c~~~~ 79 (95)
|.. ++.|.|++||+|..|+. |.+||+|. .|.. | .|.+++.|.. +++|.|..
T Consensus 161 C~~-~~~C~C~~G~~G~~C~~~~C~~~C~~~G~C~~~~~C~C~~G~~G~-~C~~~~C~~~C~~~G~C~~-~~~C~C~~-- 235 (324)
T 2ygq_A 161 CNE-RRICECPDGFHGPHCEKALCTPRCMNGGLCVTPGFCICPPGFYGV-NCDKANCSTTCFNGGTCFY-PGKCICPP-- 235 (324)
T ss_dssp ECT-TSCEECCTTEESSSSCEESSSSCCCTTCEECSSCCEECCTTCBTT-TTCBCCCSSCCCSSCCBSC-SSCBCCCT--
T ss_pred ECC-CCeEECCCCCcCCCCCCCCCCCCCCCCCEEcCCCEEeCCCCccCC-CcccCcCCCCCCCCCeeCC-CCeeeCCC--
Confidence 554 46777777777777651 55666663 2221 1 2344456653 56677766
Q ss_pred ccccCCCC
Q psy4720 80 VVTFPNYP 87 (95)
Q Consensus 80 ~~~~~~c~ 87 (95)
++.|.+|+
T Consensus 236 G~~G~~C~ 243 (324)
T 2ygq_A 236 GLEGEQCE 243 (324)
T ss_dssp TCCTTTTC
T ss_pred CccCCCCC
Confidence 66676665
No 21
>3tbd_A Netrin-G2, laminet-2; laminin N-terminal domain, domain VI, LE-domain, N neuronal cell adhesion molecule, netrin G ligand 2, nervous system; HET: NAG; 1.80A {Homo sapiens} PDB: 3zyg_A* 3zyi_B*
Probab=96.63 E-value=0.00074 Score=49.27 Aligned_cols=41 Identities=27% Similarity=0.755 Sum_probs=34.5
Q ss_pred ccCCCCCCCCCCCccccCCc--eeecCCCccCCCCCCCCCCccCCC
Q psy4720 10 LPCQCDIDGSKSFECEQFGG--QCQCKPNVIGRRCEMCATGYYGFP 53 (95)
Q Consensus 10 ~~C~C~~~gs~~~~C~~~~G--~C~C~~g~~G~~C~~C~~G~~g~~ 53 (95)
.+|.|+++++ .|.+.+| +|.|+.++.|..|++|.++|++.+
T Consensus 268 G~C~CnGHA~---~C~~~~g~~~C~C~HnT~G~~Ce~C~p~y~~~p 310 (338)
T 3tbd_A 268 GRCKCNLHAN---LCSMREGSLQCECEHNTTGPDCGKCKKNFRTRS 310 (338)
T ss_dssp EEECCTTBCS---CEEEETTEEEECCCTTEESTTSCEECTTCBSSC
T ss_pred ccccccCCcC---ccCCCCCCceecCCCCCCCCCCcccCccccCCC
Confidence 3688998877 4776555 699999999999999999999876
No 22
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Probab=96.57 E-value=0.0011 Score=52.26 Aligned_cols=57 Identities=25% Similarity=0.519 Sum_probs=36.8
Q ss_pred CceeecCCCccCCCCCCCCCCccCCCCceecc-------CCCCCCCCCCCCceeccCC--CccccCCCC
Q psy4720 28 GGQCQCKPNVIGRRCEMCATGYYGFPDCHPCN-------CPFTAVCDSYTGKLAQVLI--QVVTFPNYP 87 (95)
Q Consensus 28 ~G~C~C~~g~~G~~C~~C~~G~~g~~~C~~C~-------C~~~~~C~~~tG~C~c~~~--~~~~~~~c~ 87 (95)
.|.|.|++||+|..|+ +..++++......|. |.+++.|. .|+|.|... .+++|.+|+
T Consensus 457 ~G~C~C~~Gy~G~~Ce-~~~~~~~~~~~~~C~~~~~~~~Cs~~G~C~--~g~C~C~~~~~~Gy~G~~Ce 522 (690)
T 3fcs_B 457 CGVCRCGPGWLGSQCE-CSEEDYRPSQQDECSPREGQPVCSQRGECL--CGQCVCHSSDFGKITGKYCE 522 (690)
T ss_dssp TTEEEECTTCCSSSSC-CSCC------CCCCSSSSSSCGGGGSEEEC--SSSEEECCCSSCCCBSTTSC
T ss_pred CCceEeCCCccCCcee-eccCccCCccCCcCCCCCCCCCCCCCCEEE--CCeeEeecCCCCCeeCCCcC
Confidence 4678899999999995 455555533222232 56667787 589999821 289999885
No 23
>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD finger, cell adhesion, innate immunity, extracellular MA protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}
Probab=96.56 E-value=0.0021 Score=40.24 Aligned_cols=15 Identities=20% Similarity=0.740 Sum_probs=9.9
Q ss_pred eeecCCCccCCCCCC
Q psy4720 30 QCQCKPNVIGRRCEM 44 (95)
Q Consensus 30 ~C~C~~g~~G~~C~~ 44 (95)
.|.|+++|+|..|+.
T Consensus 24 ~C~C~~G~~G~~C~~ 38 (143)
T 4d90_A 24 SCECPDGFTDPNCSS 38 (143)
T ss_dssp EEECCTTCCTTTTCS
T ss_pred EeECCCCCCCCCCcc
Confidence 567777777766653
No 24
>2p28_B Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell adhesion; HET: NAG; 2.20A {Homo sapiens} PDB: 1l3y_A
Probab=96.22 E-value=0.0011 Score=45.44 Aligned_cols=55 Identities=24% Similarity=0.432 Sum_probs=38.0
Q ss_pred CceeecCCCccCCCCCCCCCCccCC----CCce----eccCCCCCCCCCCCCceeccCCCc------cccCCCC
Q psy4720 28 GGQCQCKPNVIGRRCEMCATGYYGF----PDCH----PCNCPFTAVCDSYTGKLAQVLIQV------VTFPNYP 87 (95)
Q Consensus 28 ~G~C~C~~g~~G~~C~~C~~G~~g~----~~C~----~C~C~~~~~C~~~tG~C~c~~~~~------~~~~~c~ 87 (95)
.|.|.|.++|+|..|+ |+.+.+.. ..|. .-.|.+++.|. .|+|.|.. + +.|..|+
T Consensus 106 ~g~C~C~~G~~G~~Ce-c~~~~~~~~~~~~~C~~~~~~~~Csg~G~C~--~g~C~C~~--gw~~~~~~~G~~Ce 174 (217)
T 2p28_B 106 CGICRCDTGYIGKNCE-CQTQGRSSQELEGSCRKDNNSIICSGLGDCV--CGQCLCHT--SDVPGKLIYGQYCE 174 (217)
T ss_dssp TTEEEECTTEESTTSC-EECCCCC-GGGGGGGBSSTTSCBGGGTEEEE--TTEEEECC--CCSTTCCEESTTSC
T ss_pred CCEEECCCCccCCccc-ccCcccccccCCCcCCCCCCCCCCCCCCEEe--CCceECCC--CCCCcccEECCCcc
Confidence 3789999999999998 55443321 1243 23355667787 58999987 5 6888886
No 25
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=95.19 E-value=0.0056 Score=45.93 Aligned_cols=53 Identities=26% Similarity=0.524 Sum_probs=17.0
Q ss_pred ccccCCceeecCCCccCCCCCCCCCCccCCCCceeccCCCCCCCCCCCCceeccCCCccccCCCCc
Q psy4720 23 ECEQFGGQCQCKPNVIGRRCEMCATGYYGFPDCHPCNCPFTAVCDSYTGKLAQVLIQVVTFPNYPS 88 (95)
Q Consensus 23 ~C~~~~G~C~C~~g~~G~~C~~C~~G~~g~~~C~~C~C~~~~~C~~~tG~C~c~~~~~~~~~~c~~ 88 (95)
.|.. .+.|.|+++|+|..|+. ..|.+ .|.+++.|... ..|.|.. ++.|.+|+.
T Consensus 403 ~C~~-~~~C~C~~G~~G~~C~~--------~~C~~-~C~~~g~C~~~-~~C~C~~--G~~G~~C~~ 455 (463)
T 2wg3_C 403 YCTP-TGKCCCSPGWEGDFCRT--------AKCEP-ACRHGGVCVRP-NKCLCKK--GYLGPQCEQ 455 (463)
T ss_dssp EECT-TSCEEECTTEESTTSCE--------ECC---------------------------------
T ss_pred ccCC-CCeECCCCCcCCCcCCc--------CcCCC-CCCCCCEECCC-CEEECCC--CcccCCCCC
Confidence 3654 46899999999998862 23443 56667788854 7899988 899988864
No 26
>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding, EGF-like domain, structure and function, coagulation factor; 1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A
Probab=93.55 E-value=0.079 Score=25.96 Aligned_cols=33 Identities=27% Similarity=0.575 Sum_probs=21.4
Q ss_pred CCCccCCCCCCCCCCCccccCCc--eeecCCCccCCCCC
Q psy4720 7 HEALPCQCDIDGSKSFECEQFGG--QCQCKPNVIGRRCE 43 (95)
Q Consensus 7 ~~C~~C~C~~~gs~~~~C~~~~G--~C~C~~g~~G~~C~ 43 (95)
+.|.+-.|...+. |....+ .|.|+++|+|.+|+
T Consensus 4 d~C~~~pC~ngg~----C~~~~~~~~C~C~~G~~G~~Ce 38 (39)
T 1edm_B 4 DQCESNPCLNGGS----CKDDINSYECWCPFGFEGKNCE 38 (39)
T ss_dssp CTTTTCCCCTTCE----EEEETTEEEEECCTTCCSTTSC
T ss_pred ccCCCCCCCCCCE----eEcCCCceEeECCCCCcCCccC
Confidence 4565545655443 644333 68899999998886
No 27
>2c4f_L Coagulation factor VII precursor; blood coagulation, serine protease, EGF, EGF-like domain, GLA, receptor enzyme, glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L* 2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L* 1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L* 2flb_L* ...
Probab=92.86 E-value=0.028 Score=35.48 Aligned_cols=34 Identities=29% Similarity=0.696 Sum_probs=22.0
Q ss_pred CCCccCCCCCCCCCCCccccCCc--eeecCCCccCCCCCC
Q psy4720 7 HEALPCQCDIDGSKSFECEQFGG--QCQCKPNVIGRRCEM 44 (95)
Q Consensus 7 ~~C~~C~C~~~gs~~~~C~~~~G--~C~C~~g~~G~~C~~ 44 (95)
+.|.+=.|...+ .|....+ .|.|++||+|..|+.
T Consensus 48 d~C~~~pC~n~g----~C~~~~g~y~C~C~~G~~G~~C~~ 83 (142)
T 2c4f_L 48 DQCASSPCQNGG----SCKDQLQSYICFCLPAFEGRNCET 83 (142)
T ss_dssp CGGGGCCCCTTC----EEEEETTEEEEECCTTEESTTSCE
T ss_pred CcCcCCCcCCCC----EEeCCCCCEEeeCCCCccCCcccc
Confidence 445544455444 3655444 789999999998863
No 28
>3tbd_A Netrin-G2, laminet-2; laminin N-terminal domain, domain VI, LE-domain, N neuronal cell adhesion molecule, netrin G ligand 2, nervous system; HET: NAG; 1.80A {Homo sapiens} PDB: 3zyg_A* 3zyi_B*
Probab=92.84 E-value=0.029 Score=40.92 Aligned_cols=38 Identities=21% Similarity=0.432 Sum_probs=31.0
Q ss_pred ceeccCCCC-CCCCCCCC--ceeccCCCccccCCCCcCCCCCC
Q psy4720 55 CHPCNCPFT-AVCDSYTG--KLAQVLIQVVTFPNYPSCKLWYN 94 (95)
Q Consensus 55 C~~C~C~~~-~~C~~~tG--~C~c~~~~~~~~~~c~~c~~~~~ 94 (95)
-..|.|+.+ ..|++.+| +|.|.. ...|++|++|+++|+
T Consensus 267 ~G~C~CnGHA~~C~~~~g~~~C~C~H--nT~G~~Ce~C~p~y~ 307 (338)
T 3tbd_A 267 IGRCKCNLHANLCSMREGSLQCECEH--NTTGPDCGKCKKNFR 307 (338)
T ss_dssp EEEECCTTBCSCEEEETTEEEECCCT--TEESTTSCEECTTCB
T ss_pred eccccccCCcCccCCCCCCceecCCC--CCCCCCCcccCcccc
Confidence 358999987 47988777 477655 899999999999996
No 29
>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB: 2x10_A* 2x11_A 3mx0_A* 3mbw_A*
Probab=92.69 E-value=0.067 Score=40.90 Aligned_cols=53 Identities=19% Similarity=0.362 Sum_probs=35.4
Q ss_pred cccCCceeecCCCcc--CCCCCCCCCCccCCC----CceeccCCCCCCCCCCCCceeccC
Q psy4720 24 CEQFGGQCQCKPNVI--GRRCEMCATGYYGFP----DCHPCNCPFTAVCDSYTGKLAQVL 77 (95)
Q Consensus 24 C~~~~G~C~C~~g~~--G~~C~~C~~G~~g~~----~C~~C~C~~~~~C~~~tG~C~c~~ 77 (95)
.-...|+|.|++||. +..|..|++|||... .|++|--+.. .-+..+..|.|..
T Consensus 258 w~~p~G~C~C~~G~e~~~~~C~aC~~g~~k~~~~~~~C~~CP~~S~-s~~~Gs~~C~C~n 316 (536)
T 3fl7_A 258 WLVPIGQCLCQAGYEKVEDACQACSPGFFKFEASESPCLECPEHTL-PSPEGATSCECEE 316 (536)
T ss_dssp BCCCBCCCEECTTEEEETTEEEECCTTEECCSCCSSCCEECCSSEE-CCCTTCSSCEECT
T ss_pred EecccCcEeccCccccCCceeeecCCCCCcccCCCCccccCCCCCC-CCCCCccEEEEec
Confidence 334469999999997 678889999999642 6787743321 2233444566644
No 30
>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A
Probab=92.65 E-value=0.042 Score=32.21 Aligned_cols=26 Identities=8% Similarity=-0.121 Sum_probs=18.0
Q ss_pred CCCCCCCCCC----CCceeccCCCccccCCCC
Q psy4720 60 CPFTAVCDSY----TGKLAQVLIQVVTFPNYP 87 (95)
Q Consensus 60 C~~~~~C~~~----tG~C~c~~~~~~~~~~c~ 87 (95)
|.+++.|... .-+|.|.. ++.|.+|+
T Consensus 56 C~ngg~C~~~~~~~~~~C~C~~--G~~G~~Ce 85 (91)
T 1tpg_A 56 CFNGGTCQQALYFSDFVCQCPE--GFAGKSCE 85 (91)
T ss_dssp SCTTCEEEEESSSSCEEEECCT--TCBSSSCC
T ss_pred CCCCCEeecCCCCCCeEeECCC--CCcCCcCC
Confidence 4555667653 34688877 89998886
No 31
>2p28_B Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell adhesion; HET: NAG; 2.20A {Homo sapiens} PDB: 1l3y_A
Probab=90.18 E-value=0.14 Score=34.94 Aligned_cols=50 Identities=26% Similarity=0.470 Sum_probs=33.7
Q ss_pred CceeecCCC------ccCCCCCC----CCCCccCCCCceeccCCCC--CCCCCCCCceeccCCCccccCCCCc
Q psy4720 28 GGQCQCKPN------VIGRRCEM----CATGYYGFPDCHPCNCPFT--AVCDSYTGKLAQVLIQVVTFPNYPS 88 (95)
Q Consensus 28 ~G~C~C~~g------~~G~~C~~----C~~G~~g~~~C~~C~C~~~--~~C~~~tG~C~c~~~~~~~~~~c~~ 88 (95)
.|+|.|.++ |+|..|+. |... .+ .+ |..+ +.|+ .|+|.|.+ ++.|..|+.
T Consensus 153 ~g~C~C~~gw~~~~~~~G~~Ce~~~~~C~~~-~g----~~--C~~~~~G~C~--~g~C~C~~--G~~G~~C~~ 214 (217)
T 2p28_B 153 CGQCLCHTSDVPGKLIYGQYCECDTINCERY-NG----QV--CGGPGRGLCF--CGKCRCHP--GFEGSACQH 214 (217)
T ss_dssp TTEEEECCCCSTTCCEESTTSCEESSCSCEE-TT----EE--TTCTTTEEEE--TTEEEECT--TEESTTSCE
T ss_pred CCceECCCCCCCcccEECCCcccCCccCCCC-CC----CC--CCCCCCcEEe--CCeeECCC--CCccCCcCC
Confidence 478899999 58888862 3321 11 12 4444 7787 48999988 899998863
No 32
>1a3p_A Epidermal growth factor; disulfide connectivities, EGF-like domain, repeat; HET: ABA; NMR {Mus musculus} SCOP: g.3.11.1
Probab=89.76 E-value=0.28 Score=24.86 Aligned_cols=16 Identities=31% Similarity=0.781 Sum_probs=13.3
Q ss_pred CceeecCCCccCCCCC
Q psy4720 28 GGQCQCKPNVIGRRCE 43 (95)
Q Consensus 28 ~G~C~C~~g~~G~~C~ 43 (95)
+-.|.|+++|+|.+|+
T Consensus 25 ~~~C~C~~G~~G~~Ce 40 (45)
T 1a3p_A 25 SYTCNCVIGYSGDRCQ 40 (45)
T ss_dssp SEEEECCTTEETTTTC
T ss_pred CEEEEcCCCCcCCcCC
Confidence 3478999999999886
No 33
>3u7u_G Neuregulin 1; signaling protein, transferase-transferase regulator complex glycosylation; HET: NAG; 3.03A {Homo sapiens}
Probab=88.55 E-value=0.43 Score=25.59 Aligned_cols=34 Identities=26% Similarity=0.519 Sum_probs=22.2
Q ss_pred CCCccCCCCCCCCCCCccc------c-CCceeecCCCccCCCCCC
Q psy4720 7 HEALPCQCDIDGSKSFECE------Q-FGGQCQCKPNVIGRRCEM 44 (95)
Q Consensus 7 ~~C~~C~C~~~gs~~~~C~------~-~~G~C~C~~g~~G~~C~~ 44 (95)
+.|.+=.|...|. |. . ..-.|.|+++|+|.+|+.
T Consensus 9 ~eC~s~pC~NgGt----C~~~~~~d~~~~y~C~C~~g~~G~~CE~ 49 (55)
T 3u7u_G 9 AEKEKTFCVNGGE----CFMVKDLSNPSRYLCKCPNEFTGDRCQN 49 (55)
T ss_dssp CSTTTTTSCTTCE----EEEECCC--CCCEEEEECTTEESTTSCE
T ss_pred CCCcCCCCCCCCC----cCCCCccCCCCCEeEeCCCCCcCCCcCc
Confidence 3454444665554 62 1 234799999999999984
No 34
>1x7a_L Coagulation factor IX, light chain; inhibition, blood clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP: g.3.11.1 g.3.11.1 PDB: 1pfx_L*
Probab=87.46 E-value=0.88 Score=28.66 Aligned_cols=21 Identities=29% Similarity=0.737 Sum_probs=15.7
Q ss_pred ccccCCc--eeecCCCccCCCCC
Q psy4720 23 ECEQFGG--QCQCKPNVIGRRCE 43 (95)
Q Consensus 23 ~C~~~~G--~C~C~~g~~G~~C~ 43 (95)
.|....+ .|.|++||+|..|+
T Consensus 61 ~C~~~~~~y~C~C~~G~~G~~C~ 83 (146)
T 1x7a_L 61 LCKDDINSYECWCQVGFEGKNCE 83 (146)
T ss_dssp EEEECSSCEEEECCSSEESTTTC
T ss_pred EeECCCCCEEEecCCCCcCCcCC
Confidence 3644433 78999999999886
No 35
>1k36_A Epiregulin; EGF-like fold, hormone/growth factor complex; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1k37_A
Probab=87.45 E-value=0.3 Score=25.12 Aligned_cols=16 Identities=38% Similarity=0.924 Sum_probs=13.5
Q ss_pred ceeecCCCccCCCCCC
Q psy4720 29 GQCQCKPNVIGRRCEM 44 (95)
Q Consensus 29 G~C~C~~g~~G~~C~~ 44 (95)
-.|.|++||+|.+|+.
T Consensus 28 ~~C~C~~GytG~~Ce~ 43 (46)
T 1k36_A 28 NYCRCEVGYTGVRCEH 43 (46)
T ss_dssp EEEEECTTCSSTTSCC
T ss_pred EEEECCCCCccCCCCc
Confidence 4689999999999874
No 36
>1egf_A Epidermal growth factor; NMR {Mus musculus} SCOP: g.3.11.1 PDB: 1epg_A 1eph_A 1epi_A 1epj_A 3egf_A 1gk5_A
Probab=85.61 E-value=1.2 Score=23.14 Aligned_cols=22 Identities=23% Similarity=0.605 Sum_probs=16.4
Q ss_pred ceeecCCCccCCCCCCCCCCcc
Q psy4720 29 GQCQCKPNVIGRRCEMCATGYY 50 (95)
Q Consensus 29 G~C~C~~g~~G~~C~~C~~G~~ 50 (95)
-.|.|+++|+|.+|+.=...+|
T Consensus 29 ~~C~C~~G~~G~~Ce~~~~~~~ 50 (53)
T 1egf_A 29 YTCNCVIGYSGDRCQTRDLRWW 50 (53)
T ss_dssp EEEECCTTCCSSSSCCCSCCCC
T ss_pred EEEECCCCCcCCcCCccCcccc
Confidence 4789999999999976444443
No 37
>3ltf_D Protein spitz; receptor-ligand complex ectodomain cysteine rich domain EGF ATP-binding, kinase, nucleotide-binding, receptor; HET: NAG MAN; 3.20A {Drosophila melanogaster}
Probab=82.66 E-value=0.77 Score=24.71 Aligned_cols=15 Identities=40% Similarity=1.167 Sum_probs=13.6
Q ss_pred eeecCCCccCCCCCC
Q psy4720 30 QCQCKPNVIGRRCEM 44 (95)
Q Consensus 30 ~C~C~~g~~G~~C~~ 44 (95)
.|.|++||+|.+|+.
T Consensus 34 ~C~C~~Gf~G~~Ce~ 48 (58)
T 3ltf_D 34 SCECAIGFMGQRCEY 48 (58)
T ss_dssp EEEECTTEESSSSCE
T ss_pred EeECCCCCccCCCcc
Confidence 799999999999983
No 38
>3ca7_A Protein spitz; argos, EGF, developmental protein, differentiation, EGF-like domain, endoplasmic reticulum, glycoprotein, golgi apparatus; 1.50A {Drosophila melanogaster} PDB: 3c9a_C 3ltg_D
Probab=82.14 E-value=0.65 Score=24.21 Aligned_cols=15 Identities=40% Similarity=1.167 Sum_probs=13.2
Q ss_pred eeecCCCccCCCCCC
Q psy4720 30 QCQCKPNVIGRRCEM 44 (95)
Q Consensus 30 ~C~C~~g~~G~~C~~ 44 (95)
.|.|+++|+|.+|+.
T Consensus 34 ~C~C~~Gf~G~~Ce~ 48 (52)
T 3ca7_A 34 SCECAIGFMGQRCEY 48 (52)
T ss_dssp EEECCTTEESTTSCE
T ss_pred EEECCCCCcCCCCcc
Confidence 799999999999873
No 39
>1iox_A Betacellulin; EGF-like fold, hormone/growth factor complex; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1ip0_A
Probab=81.87 E-value=0.59 Score=24.55 Aligned_cols=16 Identities=44% Similarity=0.989 Sum_probs=13.3
Q ss_pred ceeecCCCccCCCCCC
Q psy4720 29 GQCQCKPNVIGRRCEM 44 (95)
Q Consensus 29 G~C~C~~g~~G~~C~~ 44 (95)
-.|.|.++|+|.+|+.
T Consensus 30 ~~C~C~~gy~G~RCe~ 45 (50)
T 1iox_A 30 PSCVCDEGYIGARCER 45 (50)
T ss_dssp EEECCCTTEETTTTCE
T ss_pred eEEECCCCcccCCCCe
Confidence 4688999999999874
No 40
>1nql_B Epidermal growth factor; cell surface receptor, tyrosine kinase, glycoprotein, endoso growth factor, auto-inhibition; HET: NAG BMA; 2.80A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ivo_C* 2kv4_A 1jl9_A 1p9j_A 3njp_C*
Probab=81.62 E-value=0.65 Score=24.51 Aligned_cols=18 Identities=33% Similarity=0.768 Sum_probs=14.8
Q ss_pred ceeecCCCccCCCCCCCC
Q psy4720 29 GQCQCKPNVIGRRCEMCA 46 (95)
Q Consensus 29 G~C~C~~g~~G~~C~~C~ 46 (95)
-.|.|+++|+|.+|+.=.
T Consensus 29 ~~C~C~~GytG~~Ce~~~ 46 (53)
T 1nql_B 29 YACNCVVGYIGERCQYRD 46 (53)
T ss_dssp EEEEECTTEESTTSCEEC
T ss_pred EEEecCCCCcCCCCCcCC
Confidence 478999999999998533
No 41
>2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A*
Probab=81.41 E-value=0.68 Score=28.48 Aligned_cols=41 Identities=22% Similarity=0.410 Sum_probs=20.2
Q ss_pred CCCCCccCCCCce----ec---cCCCCCCCCCCCC--ceeccCCCccccCCCC
Q psy4720 44 MCATGYYGFPDCH----PC---NCPFTAVCDSYTG--KLAQVLIQVVTFPNYP 87 (95)
Q Consensus 44 ~C~~G~~g~~~C~----~C---~C~~~~~C~~~tG--~C~c~~~~~~~~~~c~ 87 (95)
.|++||.|.. |. +| .|..++.|....| +|.|.. ++.|.+|+
T Consensus 69 ~C~~G~~G~~-C~~~~~~C~~~~C~~~g~C~~~~g~~~C~C~~--G~~G~~C~ 118 (135)
T 2vj3_A 69 ICMPGYEGVH-CEVNTDECASSPCLHNGRCLDKINEFQCECPT--GFTGHLCQ 118 (135)
T ss_dssp ECCTTEESSS-SCEECCTTTTCCSTTTCEEEECSSCEEEECCT--TEESSSSC
T ss_pred eCCCCCcCCc-ceecCCcccCCCcCCCCEeECCCCCeEEECCC--CCcCCccC
Confidence 4666666633 21 12 1333345554443 555555 66666554
No 42
>1hae_A Heregulin-alpha; growth factor; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1haf_A 1hre_A 1hrf_A
Probab=80.97 E-value=0.54 Score=25.40 Aligned_cols=16 Identities=38% Similarity=1.020 Sum_probs=13.9
Q ss_pred CceeecCCCccCCCCC
Q psy4720 28 GGQCQCKPNVIGRRCE 43 (95)
Q Consensus 28 ~G~C~C~~g~~G~~C~ 43 (95)
.-.|.|++||+|.+|+
T Consensus 31 ~y~C~C~~Gf~G~~Ce 46 (63)
T 1hae_A 31 RYLCKCQPGFTGARCT 46 (63)
T ss_dssp CEEEECCTTEESTTSC
T ss_pred CEEEECCCCCcCCccC
Confidence 3479999999999997
No 43
>3e50_C Protransforming growth factor alpha; IDE, TGF-alpha, cytoplasm, hydrolase, metal-binding, metalloprotease, polymorphism, protease, zinc; 2.30A {Homo sapiens} SCOP: g.3.11.1 PDB: 1yuf_A 1yug_A 2tgf_A 1mox_C 3tgf_A 4tgf_A
Probab=80.51 E-value=0.78 Score=24.20 Aligned_cols=16 Identities=38% Similarity=0.991 Sum_probs=12.7
Q ss_pred ceeecCCCccCCCCCC
Q psy4720 29 GQCQCKPNVIGRRCEM 44 (95)
Q Consensus 29 G~C~C~~g~~G~~C~~ 44 (95)
-.|.|.+||+|.+|+.
T Consensus 30 ~~C~C~~gy~G~RCe~ 45 (50)
T 3e50_C 30 PACVCHSGYVGARCEH 45 (50)
T ss_pred eEEECCCCCcccCCCc
Confidence 4788888888888863
No 44
>2rnl_A Amphiregulin; AR, colorectum cell-derived growth factor, EGF-like domain, CRDGF, cytokine, glycoprotein, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=78.81 E-value=1.1 Score=23.48 Aligned_cols=16 Identities=31% Similarity=0.910 Sum_probs=12.7
Q ss_pred ceeecCCCccCCCCCC
Q psy4720 29 GQCQCKPNVIGRRCEM 44 (95)
Q Consensus 29 G~C~C~~g~~G~~C~~ 44 (95)
-.|.|.++|+|.+|+.
T Consensus 34 ~~C~C~~gy~G~RCe~ 49 (50)
T 2rnl_A 34 VTCKCQQEYFGERCGE 49 (50)
T ss_dssp EEEECCSSCCSSSCCC
T ss_pred eeEECCCCcccccccc
Confidence 4688999999988863
No 45
>4fhq_A Tumor necrosis factor receptor superfamily member; cysteine rich domain, TNF receptor, structural genomics, PSI protein structure initiative; 2.25A {Homo sapiens} PDB: 2aw2_B*
Probab=76.57 E-value=0.83 Score=28.73 Aligned_cols=39 Identities=26% Similarity=0.532 Sum_probs=22.6
Q ss_pred CCCCCCCCCCccCC-----CCceecc-CCC--C----CCCCCCC-CceeccC
Q psy4720 39 GRRCEMCATGYYGF-----PDCHPCN-CPF--T----AVCDSYT-GKLAQVL 77 (95)
Q Consensus 39 G~~C~~C~~G~~g~-----~~C~~C~-C~~--~----~~C~~~t-G~C~c~~ 77 (95)
...|..|++|+|.. ..|++|. |.. + ..|.+.+ -.|.|+.
T Consensus 36 ~t~C~pC~~gtys~~~n~~~~C~~C~~C~~~~g~~~~~~CT~t~dtvC~C~~ 87 (134)
T 4fhq_A 36 GTVCEPCPPGTYIAHLNGLSKCLQCQMCDPAMGLRASRNCSRTENAVCGCSP 87 (134)
T ss_dssp CCEEEECCTTEECCSCBCCSSCEECCCCCGGGTEEEEECCCSSSCCEEEECT
T ss_pred CCcccCCCCCCEecCCCCCCcCcCCCCCCccCCeEEeccCCCCCCccccCCC
Confidence 34677888888854 3576664 442 1 2455543 3466666
No 46
>2ygo_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: MLY PCF NAG; 1.85A {Homo sapiens} PDB: 2ygp_A*
Probab=71.35 E-value=2.5 Score=28.28 Aligned_cols=22 Identities=27% Similarity=0.688 Sum_probs=17.9
Q ss_pred ccccCCceeecCCCccCCCCCCC
Q psy4720 23 ECEQFGGQCQCKPNVIGRRCEMC 45 (95)
Q Consensus 23 ~C~~~~G~C~C~~g~~G~~C~~C 45 (95)
.|.. .++|.|++||.|..|+.-
T Consensus 160 ~Cv~-P~~C~C~~Gw~G~~C~~~ 181 (188)
T 2ygo_A 160 FCNE-RRICECPDGFHGPHCEGT 181 (188)
T ss_dssp EECT-TSCEECCTTCBTTTTCBC
T ss_pred EeCC-CCcccCcCCCCCCCCcCC
Confidence 4755 578999999999999863
No 47
>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD finger, cell adhesion, innate immunity, extracellular MA protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}
Probab=70.95 E-value=3.7 Score=25.00 Aligned_cols=15 Identities=27% Similarity=0.738 Sum_probs=10.7
Q ss_pred ceeecCCCccCCCCC
Q psy4720 29 GQCQCKPNVIGRRCE 43 (95)
Q Consensus 29 G~C~C~~g~~G~~C~ 43 (95)
..|.|++||.|.+|+
T Consensus 80 ~~C~C~~G~~G~~C~ 94 (143)
T 4d90_A 80 YVCKCPRGFNGIHCQ 94 (143)
T ss_dssp EEEECCTTEESTTSC
T ss_pred eEeECcCCCcCCCcc
Confidence 467777777777774
No 48
>2ygo_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: MLY PCF NAG; 1.85A {Homo sapiens} PDB: 2ygp_A*
Probab=70.59 E-value=2.4 Score=28.33 Aligned_cols=28 Identities=11% Similarity=0.089 Sum_probs=22.7
Q ss_pred cCCCCCCCCCCCCceeccCCCccccCCCCcC
Q psy4720 59 NCPFTAVCDSYTGKLAQVLIQVVTFPNYPSC 89 (95)
Q Consensus 59 ~C~~~~~C~~~tG~C~c~~~~~~~~~~c~~c 89 (95)
.|.+++.|.. .++|.|.. +++|.+|+.=
T Consensus 154 ~C~ngG~Cv~-P~~C~C~~--Gw~G~~C~~~ 181 (188)
T 2ygo_A 154 GCRNGGFCNE-RRICECPD--GFHGPHCEGT 181 (188)
T ss_dssp CCCTTCEECT-TSCEECCT--TCBTTTTCBC
T ss_pred CCCCCCEeCC-CCcccCcC--CCCCCCCcCC
Confidence 3566788884 89999988 9999999863
No 49
>2k2s_B Micronemal protein 6; microneme protein complex, cell adhesion, cytoplasmic vesicl lectin, virulence, EGF-like domain, membrane; NMR {Toxoplasma gondii} PDB: 2k2t_A
Probab=65.94 E-value=1.9 Score=23.42 Aligned_cols=20 Identities=15% Similarity=0.483 Sum_probs=14.4
Q ss_pred cccCCc--eeecCCCcc-CCCCC
Q psy4720 24 CEQFGG--QCQCKPNVI-GRRCE 43 (95)
Q Consensus 24 C~~~~G--~C~C~~g~~-G~~C~ 43 (95)
|....+ .|.|++||+ |..|+
T Consensus 27 C~~~~g~y~C~C~~Gy~~G~~C~ 49 (61)
T 2k2s_B 27 CKETNSGYICRCNQGYRISLDGT 49 (61)
T ss_dssp EEECSSEEEEECCTTEEEEECSS
T ss_pred cccCCCceEeECCCCCccCCCCC
Confidence 644333 688999999 88875
No 50
>1xdt_R Hbegf, heparin-binding epidermal growth factor; complex (toxin-growth factor), diphtheria toxin, receptor, H binding epidermal growth factor; 2.65A {Homo sapiens} SCOP: g.3.11.1
Probab=65.77 E-value=2.6 Score=24.34 Aligned_cols=15 Identities=40% Similarity=1.079 Sum_probs=12.0
Q ss_pred ceeecCCCccCCCCC
Q psy4720 29 GQCQCKPNVIGRRCE 43 (95)
Q Consensus 29 G~C~C~~g~~G~~C~ 43 (95)
-.|.|.++|+|.+|+
T Consensus 62 ~~C~C~~GYtG~RCE 76 (79)
T 1xdt_R 62 PSCICHPGYHGERCH 76 (79)
T ss_dssp CCEEECTTEESTTCC
T ss_pred eEEEcCCCccccccc
Confidence 358888888888886
No 51
>1aut_L Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 3f6u_L*
Probab=64.92 E-value=4.2 Score=24.13 Aligned_cols=22 Identities=32% Similarity=0.733 Sum_probs=15.4
Q ss_pred ccccCCc--eeecCCCccCCCCCC
Q psy4720 23 ECEQFGG--QCQCKPNVIGRRCEM 44 (95)
Q Consensus 23 ~C~~~~G--~C~C~~g~~G~~C~~ 44 (95)
.|....+ .|.|++||+|..|+.
T Consensus 27 ~C~~~~~~y~C~C~~G~~G~~C~~ 50 (114)
T 1aut_L 27 TCIDGIGSFSCDCRSGWEGRFCQR 50 (114)
T ss_dssp EECCCSSCCCEEECTTEESTTSCE
T ss_pred CCCCCCCCcEeeCCCCCcCCCcCc
Confidence 3544333 789999999988863
No 52
>3tje_F Tumor necrosis factor receptor superfamily member; agonistic antibody, FAB fragment, antibody-receptor complex, cysteine-rich domain, FAS, immune; HET: EDO; 1.93A {Homo sapiens} PDB: 3thm_F*
Probab=63.51 E-value=2.9 Score=26.90 Aligned_cols=39 Identities=23% Similarity=0.430 Sum_probs=20.6
Q ss_pred CCCCCCCCC-ccCC-----CCceecc-CCCC------CCCCCCC-CceeccCC
Q psy4720 40 RRCEMCATG-YYGF-----PDCHPCN-CPFT------AVCDSYT-GKLAQVLI 78 (95)
Q Consensus 40 ~~C~~C~~G-~~g~-----~~C~~C~-C~~~------~~C~~~t-G~C~c~~~ 78 (95)
..|..|++| +|-. ..|++|. |... ..|.+.+ -.|.|+.+
T Consensus 64 t~C~pC~~g~ty~~~~n~~~~C~~C~~C~~~~g~~~~~~CT~t~dtvC~C~~G 116 (156)
T 3tje_F 64 PDCVPCQEGKEYTDKAHFSSKCRRCRLCDEGHGLEVEINCTRTQNTKCRCKPN 116 (156)
T ss_dssp CCEEECCTTTEECSSCBSCSCCEECCCCCGGGTEEEEECCBTTBCCEEEECTT
T ss_pred CcceeCCCCCeeeccCCCCCcCcCCCCCCCCcceEEeccccCCCCCeeeCCCC
Confidence 456677777 4532 2566664 3332 2455543 34777663
No 53
>1g1s_A P-selectin; selectin, lectin, EGF, sulphated, SLEX, immune system, membr protein; HET: TYS SIA GAL NAG FUC NGA; 1.90A {Homo sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1g1r_A* 1g1q_A* 1fsb_A
Probab=62.46 E-value=3.4 Score=25.66 Aligned_cols=14 Identities=43% Similarity=1.182 Sum_probs=8.9
Q ss_pred eeecCCCccCCCCC
Q psy4720 30 QCQCKPNVIGRRCE 43 (95)
Q Consensus 30 ~C~C~~g~~G~~C~ 43 (95)
+|.|++||.|..|+
T Consensus 141 ~c~C~~g~~G~~Ce 154 (162)
T 1g1s_A 141 TCSCYPGFYGPECE 154 (162)
T ss_dssp EEEECTTEESTTSC
T ss_pred eEeCCCCCcCcccc
Confidence 55666666666665
No 54
>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain, disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB: 2rhp_A*
Probab=59.05 E-value=11 Score=29.51 Aligned_cols=33 Identities=27% Similarity=0.668 Sum_probs=19.9
Q ss_pred CCCccCCCCCCCCCCCccccCC---cee-ecCCCccC--CCCC
Q psy4720 7 HEALPCQCDIDGSKSFECEQFG---GQC-QCKPNVIG--RRCE 43 (95)
Q Consensus 7 ~~C~~C~C~~~gs~~~~C~~~~---G~C-~C~~g~~G--~~C~ 43 (95)
+.|..=.|...+ .|.... -+| .|++||+| ..|+
T Consensus 4 DeC~~nPC~~gg----~C~n~~~Gsy~C~~C~~GytGdg~~Ce 42 (634)
T 1yo8_A 4 DGCLSNPCFPGA----QCSSFPDGSWSCGFCPVGFLGNGTHCE 42 (634)
T ss_dssp CGGGGCCSCTTC----CEEECTTSCEEECCCCTTBCSCSSSCC
T ss_pred cccCCCCCCCCC----EEecCCCCCeECCcCCCccCCCCCCcc
Confidence 345444465444 365543 268 88888887 6664
No 55
>1jma_B Herpesvirus entry mediator; V-type IG molecule and TNFR superfamily, viral protein; HET: NAG; 2.65A {Human herpesvirus 1} SCOP: g.24.1.1 g.24.1.1 PDB: 2aw2_B*
Probab=55.51 E-value=6.5 Score=25.18 Aligned_cols=20 Identities=40% Similarity=0.941 Sum_probs=13.1
Q ss_pred CCCCCCCCCCccCC-----CCceec
Q psy4720 39 GRRCEMCATGYYGF-----PDCHPC 58 (95)
Q Consensus 39 G~~C~~C~~G~~g~-----~~C~~C 58 (95)
...|..|++|+|.. ..|++|
T Consensus 34 ~t~C~~Cp~GtY~~~~n~~~~C~~C 58 (167)
T 1jma_B 34 GTVCEPCPPGTYIAHLNGLSKCLQC 58 (167)
T ss_dssp CCEEEECCTTEECSSCBCSSCCEEC
T ss_pred CCcCCcCCCCccccccCcCccccCC
Confidence 34677788888753 256666
No 56
>2e26_A Reelin, reeler protein; signaling protein; HET: NAG BMA; 2.00A {Mus musculus} PDB: 3a7q_A*
Probab=53.10 E-value=1.5 Score=34.92 Aligned_cols=26 Identities=12% Similarity=-0.125 Sum_probs=21.5
Q ss_pred ccCCCCCCCCCCCCceeccCCCccccCCCC
Q psy4720 58 CNCPFTAVCDSYTGKLAQVLIQVVTFPNYP 87 (95)
Q Consensus 58 C~C~~~~~C~~~tG~C~c~~~~~~~~~~c~ 87 (95)
..|..++.|. .|+|+|.. ++.|..|+
T Consensus 539 ~~C~ghG~C~--~G~C~Cd~--G~~G~~C~ 564 (725)
T 2e26_A 539 DMCSGHGRCV--QGSCVCDE--QWGGLYCD 564 (725)
T ss_dssp GGGGGSEEEE--TTEEEECT--TEESTTSC
T ss_pred cccCCCcEEC--CCCEeeCC--CccCCCcC
Confidence 3677888887 49999988 89998886
No 57
>2fd6_A Urokinase-type plasminogen activator; UPAR, ATF, ATN-615 antibody, FAB, ternary complex, immune SY hydrolase; HET: PGE NAG FUC NDG PG4; 1.90A {Homo sapiens} SCOP: g.3.11.1 g.14.1.1 PDB: 3bt2_A* 3bt1_A* 3u73_A* 1urk_A* 3laq_A* 1kdu_A
Probab=52.80 E-value=9 Score=23.28 Aligned_cols=14 Identities=36% Similarity=0.952 Sum_probs=13.0
Q ss_pred eeecCCCccCCCCC
Q psy4720 30 QCQCKPNVIGRRCE 43 (95)
Q Consensus 30 ~C~C~~g~~G~~C~ 43 (95)
.|.|+++|+|..|+
T Consensus 20 ~C~Cp~g~~G~~Ce 33 (122)
T 2fd6_A 20 WCNCPKKFGGQHCE 33 (122)
T ss_dssp EEECCTTEESTTSC
T ss_pred CccCCCCCCCcccc
Confidence 69999999999997
No 58
>2bou_A EGF-like module containing mucin-like hormone receptor-like 2 precursor; CD97, CD55, 7TM, calcium-binding, cell adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB: 2bo2_A 2box_A
Probab=52.50 E-value=11 Score=22.90 Aligned_cols=66 Identities=18% Similarity=0.303 Sum_probs=32.9
Q ss_pred ccccCCc--eeecCCCccCCCCCCCCCCccCCCCce---ec-----cCCCCCCCCCCCC--ceeccCCCccccCCC-CcC
Q psy4720 23 ECEQFGG--QCQCKPNVIGRRCEMCATGYYGFPDCH---PC-----NCPFTAVCDSYTG--KLAQVLIQVVTFPNY-PSC 89 (95)
Q Consensus 23 ~C~~~~G--~C~C~~g~~G~~C~~C~~G~~g~~~C~---~C-----~C~~~~~C~~~tG--~C~c~~~~~~~~~~c-~~c 89 (95)
.|....+ .|.|++||+|..++.-.....+ ..|+ +| .|..++.|....| .|.|.. ++.+.+. ..|
T Consensus 60 ~C~n~~g~y~C~C~~Gy~g~~~~~~~~~~~~-~~C~dideC~~~~~~C~~~~~C~n~~g~y~C~C~~--Gy~g~~~~~~C 136 (143)
T 2bou_A 60 DCWNTEGSYDCVCSPGYEPVSGAKTFKNESE-NTCQDVDECSSGQHQCDSSTVCFNTVGSYSCRCRP--GWKPRHGIPNN 136 (143)
T ss_dssp EEEECSSCEEEEECTTEEETTCCSCBSSGGG-CCEEECCHHHHTCCCCCTTSEEEECSSCEEEECCS--SSCBCTTCCSS
T ss_pred EEEcCCCCeEeECCCCcccCcCccccccCCC-CCcCCccCccCcCCCCCCCCEEECCCCCEEeeCCC--CcccCCCCccC
Confidence 3544333 6788888888755421000111 1222 12 2444456666655 577776 6666543 334
Q ss_pred CC
Q psy4720 90 KL 91 (95)
Q Consensus 90 ~~ 91 (95)
++
T Consensus 137 ~~ 138 (143)
T 2bou_A 137 QK 138 (143)
T ss_dssp BT
T ss_pred cc
Confidence 43
No 59
>3me4_A Tumor necrosis factor receptor superfamily member; RANK, rankl, rankl-RANK complex, tnfsf11, tnfrsf11A, TNF SUP signaling protein; 2.01A {Mus musculus} PDB: 3me2_R 3qbq_B 4giq_R* 3nzy_B
Probab=52.29 E-value=6.4 Score=26.53 Aligned_cols=46 Identities=17% Similarity=0.306 Sum_probs=27.1
Q ss_pred ecCCCcc---------CCCCCCCCCCccCC-----CCceecc-CCCC------CCCCCCC-CceeccC
Q psy4720 32 QCKPNVI---------GRRCEMCATGYYGF-----PDCHPCN-CPFT------AVCDSYT-GKLAQVL 77 (95)
Q Consensus 32 ~C~~g~~---------G~~C~~C~~G~~g~-----~~C~~C~-C~~~------~~C~~~t-G~C~c~~ 77 (95)
.|++|+. ...|..|++|+|-. ..|++|. |... ..|...+ -.|.|+.
T Consensus 48 ~CppG~~~~~~Ct~~~~t~C~pC~~gtY~~~~n~~~~C~~C~~C~~~~~~~~~~~Ct~t~dtvC~C~~ 115 (216)
T 3me4_A 48 RCEPGKYLSSKCTPTSDSVCLPCGPDEYLDTWNEEDKCLLHKVCDAGKALVAVDPGNHTAPRRCACTA 115 (216)
T ss_dssp CBCTTEEEEECCBTTBCCEEEECCTTEECCSSBCCSSCEECCCCCGGGTEEEESTTCSSSCCEEEECT
T ss_pred CCCCCceecccCCCCCCCccccCCCCCeecCCCCCCcCCCCCCCCCCcCeEEEecCCCCCCccccCCC
Confidence 5777765 34677888888853 3576665 4331 2455433 3566665
No 60
>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A 1z3g_A
Probab=51.96 E-value=1.7 Score=27.94 Aligned_cols=51 Identities=20% Similarity=0.418 Sum_probs=27.0
Q ss_pred eeecCCCccC-----CCCCCCCCCccCCCCceeccC-CCCCCCCCCCC--ceeccCCCccccCCCCc
Q psy4720 30 QCQCKPNVIG-----RRCEMCATGYYGFPDCHPCNC-PFTAVCDSYTG--KLAQVLIQVVTFPNYPS 88 (95)
Q Consensus 30 ~C~C~~g~~G-----~~C~~C~~G~~g~~~C~~C~C-~~~~~C~~~tG--~C~c~~~~~~~~~~c~~ 88 (95)
.|.|++||+| ..|+.-. ...|.. .| ..++.|....| +|.|.. ++.|..++.
T Consensus 117 ~C~C~~Gy~g~~~~~~~C~~~~-----~~~C~~-~C~~~~~~C~n~~g~y~C~C~~--G~~g~~~~~ 175 (186)
T 1z1y_A 117 GCSCAIGXVPNPEDEXXCTXTG-----ETACQL-XCNTDNEVCXNVEGVYXCQCME--GFTFDXEXN 175 (186)
T ss_dssp EEEECTEEEEETTTTTEEEEEE-----CCCCCC-CCCTTTEEEEEETTEEEEEECT--TCEEETTTT
T ss_pred eEECCCCCcccCCCCCcceEcC-----CCcccc-cccccCcceecCCCCeeeECCC--CCccCcccc
Confidence 6778888877 4443100 001211 24 33455655555 577776 777776654
No 61
>2i9a_A Urokinase-type plasminogen activator; growth factor-like domain, kringle domain, hydrolase; 1.90A {Homo sapiens} SCOP: g.3.11.1 g.14.1.1 PDB: 2i9b_A*
Probab=50.19 E-value=11 Score=23.72 Aligned_cols=29 Identities=31% Similarity=0.806 Sum_probs=20.7
Q ss_pred cCCCCCCCCCCCccccC---C--ceeecCCCccCCCCC
Q psy4720 11 PCQCDIDGSKSFECEQF---G--GQCQCKPNVIGRRCE 43 (95)
Q Consensus 11 ~C~C~~~gs~~~~C~~~---~--G~C~C~~g~~G~~C~ 43 (95)
.|.|...|+ |... . ..|.|+++|.|..|+
T Consensus 12 ~cpC~NGGt----C~~~~~~s~~~~C~Cp~g~~G~~Ce 45 (145)
T 2i9a_A 12 NCDCLNGGT----CVSNKYFSNIHWCNCPKKFGGQHCE 45 (145)
T ss_dssp CCCCCTTCE----EEECSSSTTCEEEECCTTEESTTSC
T ss_pred CCCCCCCCC----cCCCccccCCccccCCCCCCCCcee
Confidence 456776665 5322 2 379999999999997
No 62
>3qd6_R CD40L receptor, tumor necrosis factor receptor superfamily member; immune regulator, cytokine-cytokine receptor compl; HET: NAG; 3.50A {Homo sapiens}
Probab=48.74 E-value=11 Score=24.42 Aligned_cols=51 Identities=20% Similarity=0.163 Sum_probs=26.3
Q ss_pred CCCCCCCCCccCC-----CCceecc-CCCC------CCCCCCC-CceeccCCCccccCCCCcCC
Q psy4720 40 RRCEMCATGYYGF-----PDCHPCN-CPFT------AVCDSYT-GKLAQVLIQVVTFPNYPSCK 90 (95)
Q Consensus 40 ~~C~~C~~G~~g~-----~~C~~C~-C~~~------~~C~~~t-G~C~c~~~~~~~~~~c~~c~ 90 (95)
..|..|.+|+|-. ..|++|. |... ..|...+ -.|.|+.+.-.....|+.|+
T Consensus 37 t~C~pC~~gty~~~~n~~~~C~~C~~C~~~~g~~~~~~Ct~t~d~~C~C~~G~~~~~~~c~~C~ 100 (177)
T 3qd6_R 37 TECLPCGESEFLDTWNRETHCHQHKYCDPNLGLRVQQKGTSETDTICTCEEGWHCTSEACESCV 100 (177)
T ss_dssp CBCCBCCSSEECCSSBCCSSCEECCCCCGGGTEEEEECCCTTSCCEEEECTTEEESSSSCCCEE
T ss_pred CccccCCCCceecCCCCCCcCCCCCcCCCcCCeEEecCCcCCCCceeecCCCcEECCCCCcccc
Confidence 4667788887753 2576664 4321 2355433 35777663222223455553
No 63
>3v4v_B Integrin beta-7; cell adhesion, madcam-1, membrane; HET: NAG BMA MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_B*
Probab=48.28 E-value=3.4 Score=31.61 Aligned_cols=35 Identities=31% Similarity=0.777 Sum_probs=0.4
Q ss_pred CCccCCCCCCCCCCCcccc-----CCceeecCCCccCCCCC
Q psy4720 8 EALPCQCDIDGSKSFECEQ-----FGGQCQCKPNVIGRRCE 43 (95)
Q Consensus 8 ~C~~C~C~~~gs~~~~C~~-----~~G~C~C~~g~~G~~C~ 43 (95)
.|. |+|......+..|+. .=|.|.|.+||.|.+|+
T Consensus 454 ~C~-C~C~~~~~~s~~C~~g~G~~~CG~C~C~~G~~G~~Ce 493 (503)
T 3v4v_B 454 LCD-CNCSDTQPQAPHCSDGQGHLQCGVCSCAPGRLGRLCE 493 (503)
T ss_dssp C----------------------------------------
T ss_pred ccC-CCCCCCCCCCcccCCCCeeEeCCceECcCCCcCCCCC
Confidence 454 666532222345641 11667788888888775
No 64
>2p26_A Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell adhesion; HET: NAG; 1.75A {Homo sapiens} PDB: 1yuk_B* 1yuk_A* 2p28_A*
Probab=47.44 E-value=7.8 Score=27.21 Aligned_cols=15 Identities=47% Similarity=1.283 Sum_probs=13.4
Q ss_pred ceeecCCCccCCCCC
Q psy4720 29 GQCQCKPNVIGRRCE 43 (95)
Q Consensus 29 G~C~C~~g~~G~~C~ 43 (95)
|.|.|.+||.|..|+
T Consensus 207 G~C~C~~g~~G~~Ce 221 (280)
T 2p26_A 207 GICRCDTGYIGKNCE 221 (280)
T ss_dssp TEEEECTTEESTTSC
T ss_pred CceeCCCCCcCCcce
Confidence 678899999999996
No 65
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=46.99 E-value=4.5 Score=30.06 Aligned_cols=20 Identities=35% Similarity=0.943 Sum_probs=0.0
Q ss_pred cccCCceeecCCCccCCCCCC
Q psy4720 24 CEQFGGQCQCKPNVIGRRCEM 44 (95)
Q Consensus 24 C~~~~G~C~C~~g~~G~~C~~ 44 (95)
|... ..|.|+++|+|..|+.
T Consensus 436 C~~~-~~C~C~~G~~G~~C~~ 455 (463)
T 2wg3_C 436 CVRP-NKCLCKKGYLGPQCEQ 455 (463)
T ss_dssp ---------------------
T ss_pred ECCC-CEEECCCCcccCCCCC
Confidence 5442 5788888888877764
No 66
>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain, blood coagulation, polymorphism, glycoprotein, hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB: 1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A* 1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B* 2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ...
Probab=46.16 E-value=4.2 Score=24.92 Aligned_cols=14 Identities=36% Similarity=1.020 Sum_probs=0.0
Q ss_pred eeecCCCccCCCCC
Q psy4720 30 QCQCKPNVIGRRCE 43 (95)
Q Consensus 30 ~C~C~~g~~G~~C~ 43 (95)
.|.|++||+|..|+
T Consensus 64 ~C~C~~G~~G~~C~ 77 (134)
T 2vh0_B 64 TCTCLEGFEGKNCE 77 (134)
T ss_dssp --------------
T ss_pred EeeCCCCccCCccc
Confidence 67888888887775
No 67
>2e26_A Reelin, reeler protein; signaling protein; HET: NAG BMA; 2.00A {Mus musculus} PDB: 3a7q_A*
Probab=45.18 E-value=5.4 Score=31.79 Aligned_cols=25 Identities=32% Similarity=0.808 Sum_probs=20.3
Q ss_pred CCCCCCCCCCccccCCceeecCCCccCCCCC
Q psy4720 13 QCDIDGSKSFECEQFGGQCQCKPNVIGRRCE 43 (95)
Q Consensus 13 ~C~~~gs~~~~C~~~~G~C~C~~g~~G~~C~ 43 (95)
.|.++|. |. .|+|+|.++|.|..|+
T Consensus 540 ~C~ghG~----C~--~G~C~Cd~G~~G~~C~ 564 (725)
T 2e26_A 540 MCSGHGR----CV--QGSCVCDEQWGGLYCD 564 (725)
T ss_dssp GGGGSEE----EE--TTEEEECTTEESTTSC
T ss_pred ccCCCcE----EC--CCCEeeCCCccCCCcC
Confidence 5666664 75 4899999999999997
No 68
>3t3p_B Integrin beta-3; integrin, cell adhesion, blood clotting, fibrinogen, platele; HET: NAG BMA MAN; 2.20A {Homo sapiens} PDB: 3t3m_B* 3nig_B* 3nif_B* 3nid_B* 2vdr_B* 2vc2_B* 2vdk_B* 2vdm_B* 2vdn_B* 2vdl_B* 2vdp_B* 2vdq_B* 2vdo_B* 3fcu_B* 1txv_B* 1ty3_B* 1ty5_B* 1ty6_B* 1ty7_B* 1tye_B*
Probab=44.04 E-value=7.4 Score=29.47 Aligned_cols=34 Identities=32% Similarity=0.894 Sum_probs=16.1
Q ss_pred CccCCCCCCCC-CCCcccc-----CCceeecCCCccCCCCC
Q psy4720 9 ALPCQCDIDGS-KSFECEQ-----FGGQCQCKPNVIGRRCE 43 (95)
Q Consensus 9 C~~C~C~~~gs-~~~~C~~-----~~G~C~C~~g~~G~~C~ 43 (95)
|. |+|..... .+..|+. .=|.|.|.+||.|..|+
T Consensus 433 C~-C~C~~~~~~~s~~C~~g~G~~~CG~C~C~~G~~G~~Ce 472 (472)
T 3t3p_B 433 CD-CACQAQAEPNSHRCNNGNGTFECGVCRCGPGWLGSQCE 472 (472)
T ss_dssp CS-CGGGGGCBTTCTTTTTTTEEEETTEEEECTTC------
T ss_pred cc-CCCCCCCCCCCcccCCCCeeEeCCceECcCCCCCCCCC
Confidence 54 66653222 2345752 12788999999999885
No 69
>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens}
Probab=42.11 E-value=21 Score=24.45 Aligned_cols=34 Identities=32% Similarity=0.738 Sum_probs=21.5
Q ss_pred CCCCccCCCCCCCCCCCccccC--CceeecCCCccCCCCC
Q psy4720 6 LHEALPCQCDIDGSKSFECEQF--GGQCQCKPNVIGRRCE 43 (95)
Q Consensus 6 ~~~C~~C~C~~~gs~~~~C~~~--~G~C~C~~g~~G~~C~ 43 (95)
.+.|..-.|...+. |... .-.|.|++||.|..|+
T Consensus 5 ~~~C~~~pC~~~g~----C~~~~~~~~C~C~~g~~g~~C~ 40 (317)
T 3h5c_B 5 GSPCISQPCLHNGS----CQDSIWGYTCTCSPGYEGSNCE 40 (317)
T ss_dssp -CCTTSCCCTTTCC----CCCCSSSCCCCCSSSCCSSSSC
T ss_pred CCcCCCCCCCCCCE----eECCCCCeEEECCCCCcCCccc
Confidence 34565545655443 5332 2378999999999986
No 70
>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A {Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*
Probab=40.41 E-value=5.9 Score=26.30 Aligned_cols=14 Identities=36% Similarity=1.020 Sum_probs=0.0
Q ss_pred eeecCCCccCCCCC
Q psy4720 30 QCQCKPNVIGRRCE 43 (95)
Q Consensus 30 ~C~C~~g~~G~~C~ 43 (95)
.|.|++||.|..|+
T Consensus 64 ~C~C~~Gf~G~~Ce 77 (195)
T 1nfu_B 64 TCTCLEGFEGKNCE 77 (195)
T ss_dssp --------------
T ss_pred eEeCCCCceecccc
Confidence 68888888888875
No 71
>3u3p_A Tumor necrosis factor receptor superfamily member; trigger apoptosis, apoptosis; 2.09A {Homo sapiens} PDB: 3u3q_A 3u3s_A 3u3t_A 3u3v_A 3qo4_A
Probab=34.13 E-value=19 Score=25.80 Aligned_cols=20 Identities=35% Similarity=0.991 Sum_probs=10.6
Q ss_pred CCCCCCCCCccCC-----CCceecc
Q psy4720 40 RRCEMCATGYYGF-----PDCHPCN 59 (95)
Q Consensus 40 ~~C~~C~~G~~g~-----~~C~~C~ 59 (95)
..|..|.+|.|-. ..|.+|.
T Consensus 45 t~C~pCp~GtYt~~~N~~~~C~~C~ 69 (313)
T 3u3p_A 45 RVCSSCPVGTFTRHENGIEKCHDCS 69 (313)
T ss_dssp CEEEECCTTEECCSCBCCSSCEECC
T ss_pred CccccCCCCceeccCCCCCcCcccc
Confidence 3455566665532 2566665
No 72
>2hey_R Tumor necrosis factor receptor superfamily member; cytokine, receptor-ligan complex, CO-stimulator, TNFSF; 2.00A {Homo sapiens} SCOP: g.24.1.1 g.24.1.1 g.24.1.1 PDB: 2hev_R
Probab=32.65 E-value=20 Score=22.18 Aligned_cols=30 Identities=27% Similarity=0.795 Sum_probs=20.5
Q ss_pred ceeecCCCcc-------CCCCCCCCCCccCCC---Cceec
Q psy4720 29 GQCQCKPNVI-------GRRCEMCATGYYGFP---DCHPC 58 (95)
Q Consensus 29 G~C~C~~g~~-------G~~C~~C~~G~~g~~---~C~~C 58 (95)
-+|.|++|+. +..|..|++|+|... .|+++
T Consensus 81 t~C~C~~G~y~~~g~~~~~~C~~C~~Gtfs~~~~~~C~~~ 120 (146)
T 2hey_R 81 TVCRCRAGTQPLDSYKPGVDCAPCPPGHFSPGDNQACKPW 120 (146)
T ss_dssp CEEEECTTEEESCSSSTTSSEEECCTTEECCSTTCCCEEC
T ss_pred ccccCCCCeeeCCCcccCcccccCCCCcccCCCCCCCcCC
Confidence 4688988854 236778999988643 45555
No 73
>1g1t_A E-selectin; EGF, adhesion molecule, SLEX, immune system, membrane protein; HET: SIA GAL MAG FUC; 1.50A {Homo sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1esl_A
Probab=31.81 E-value=20 Score=21.75 Aligned_cols=14 Identities=43% Similarity=1.272 Sum_probs=8.5
Q ss_pred eeecCCCccCCCCC
Q psy4720 30 QCQCKPNVIGRRCE 43 (95)
Q Consensus 30 ~C~C~~g~~G~~C~ 43 (95)
.|.|.++|.|.+|+
T Consensus 141 ~c~C~~g~~g~~Ce 154 (157)
T 1g1t_A 141 TCKCDPGFSGLKCE 154 (157)
T ss_dssp EEEECTTEESTTSC
T ss_pred eEECCCCccCcccc
Confidence 34566666666664
No 74
>3cfw_A L-selectin; EGF, cell adhesion, EGF-like domain, glycoprotein, membrane, sushi, transmembrane; HET: NAG MAN BMA; 2.20A {Homo sapiens}
Probab=30.94 E-value=23 Score=21.77 Aligned_cols=16 Identities=25% Similarity=0.787 Sum_probs=11.2
Q ss_pred CceeecCCCccCCCCC
Q psy4720 28 GGQCQCKPNVIGRRCE 43 (95)
Q Consensus 28 ~G~C~C~~g~~G~~C~ 43 (95)
...|.|.+||.|..|+
T Consensus 139 ~~~c~C~~g~~g~~C~ 154 (164)
T 3cfw_A 139 NYTCNCDVGYYGPQCQ 154 (164)
T ss_dssp EEEEEECTTCBSSSSC
T ss_pred CceeeeCCCccccccc
Confidence 3466777777777775
No 75
>1sg1_X Tumor necrosis factor receptor superfamily member 16; nerve growth factor, NGF, neurotrophin, common neurotrophin receptor; 2.40A {Rattus norvegicus} SCOP: g.24.1.1 g.24.1.1 g.24.1.1 g.24.1.1 PDB: 3buk_C* 3ij2_X
Probab=29.09 E-value=32 Score=21.49 Aligned_cols=44 Identities=25% Similarity=0.511 Sum_probs=20.1
Q ss_pred CCCccCC-CCCCCCCCCccccC-CceeecCCCccC----CC---CCCCCCCcc
Q psy4720 7 HEALPCQ-CDIDGSKSFECEQF-GGQCQCKPNVIG----RR---CEMCATGYY 50 (95)
Q Consensus 7 ~~C~~C~-C~~~gs~~~~C~~~-~G~C~C~~g~~G----~~---C~~C~~G~~ 50 (95)
..|++|. |.+.-.+...|... ..+|.|++|+.- .. |..|++|++
T Consensus 53 ~~C~~C~~C~~~~~~~~~Ct~t~d~~C~C~~G~y~~~~~~~C~~C~~C~~G~~ 105 (161)
T 1sg1_X 53 EPCKPCTECLGLQSMSAPCVEADDAVCRCAYGYYQDEETGHCEACSVCEVGSG 105 (161)
T ss_dssp CCCEECCCCCTTEEEEECCBTTBCCEEEECTTEEECTTTCCEEECCCBCTTEE
T ss_pred CcCcCCCCCCCcceeecCCCcccCceeccCCCeEeCCCCccccCCccCCCCCe
Confidence 3566664 54322221223221 245667776543 12 335566654
No 76
>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB: 2x10_A* 2x11_A 3mx0_A* 3mbw_A*
Probab=25.95 E-value=14 Score=28.00 Aligned_cols=32 Identities=6% Similarity=-0.199 Sum_probs=13.9
Q ss_pred CCCCCCCCCCCceeccCCCccccCCCCcCCCC
Q psy4720 61 PFTAVCDSYTGKLAQVLIQVVTFPNYPSCKLW 92 (95)
Q Consensus 61 ~~~~~C~~~tG~C~c~~~~~~~~~~c~~c~~~ 92 (95)
+..+.....+|+|.|.++-...+..|..|.+|
T Consensus 253 ~~dG~w~~p~G~C~C~~G~e~~~~~C~aC~~g 284 (536)
T 3fl7_A 253 AVDGEWLVPIGQCLCQAGYEKVEDACQACSPG 284 (536)
T ss_dssp CTTSCBCCCBCCCEECTTEEEETTEEEECCTT
T ss_pred cCCCCEecccCcEeccCccccCCceeeecCCC
Confidence 33344444455666555221223345555444
No 77
>1q4g_A Prostaglandin G/H synthase 1; cyclooxygenase, non-steroidal anti-inflammatory drug, peroxi prostaglandin synthase, EGF-like domain; HET: BOG NAG NDG BMA MAN BFL HEM; 2.00A {Ovis aries} SCOP: a.93.1.2 g.3.11.1 PDB: 1diy_A* 2ayl_A* 3kk6_A* 3n8v_A* 3n8w_A* 3n8x_A* 3n8y_A* 3n8z_A* 2oyu_P* 2oye_P* 1eqg_A* 1cqe_A* 1eqh_A* 1igz_A* 1igx_A* 1fe2_A* 1pge_A* 1pgf_A* 1pgg_A* 3n8w_B* ...
Probab=24.78 E-value=45 Score=25.46 Aligned_cols=34 Identities=24% Similarity=0.558 Sum_probs=23.5
Q ss_pred CCCccCCCCCCCCCCCcccc-C--CceeecC-CCccCCCCCC
Q psy4720 7 HEALPCQCDIDGSKSFECEQ-F--GGQCQCK-PNVIGRRCEM 44 (95)
Q Consensus 7 ~~C~~C~C~~~gs~~~~C~~-~--~G~C~C~-~g~~G~~C~~ 44 (95)
+.|.+=.|...|. |.. . .-.|.|. +||+|..|+.
T Consensus 3 d~C~~~PC~ngG~----C~~~~~~~y~C~C~~~G~~G~~Ce~ 40 (553)
T 1q4g_A 3 NPCCYYPCQHQGI----CVRFGLDRYQCDCTRTGYSGPNCTI 40 (553)
T ss_dssp CGGGGCCCCTTCE----EEEETTTEEEEECTTSSEETTTTCE
T ss_pred CcCCCCCCCCCCC----cCCCCCCceEeeCCCCCcCCCCCCC
Confidence 4465555766664 644 2 3478999 9999999974
No 78
>3k51_B Decoy receptor 3; DCR3, TL1A, TNF, TNFR, immunity, cytokine, D bond, glycoprotein, membrane, secreted, signal-anchor, transmembrane, apoptosis; 2.45A {Homo sapiens} PDB: 3mi8_D 3mhd_D
Probab=22.39 E-value=40 Score=21.72 Aligned_cols=38 Identities=21% Similarity=0.449 Sum_probs=20.4
Q ss_pred CCCCCCCCCccCC-----CCceecc--CCCC----CCCCCCC-CceeccC
Q psy4720 40 RRCEMCATGYYGF-----PDCHPCN--CPFT----AVCDSYT-GKLAQVL 77 (95)
Q Consensus 40 ~~C~~C~~G~~g~-----~~C~~C~--C~~~----~~C~~~t-G~C~c~~ 77 (95)
..|..|++|+|-. ..|++|. |..+ ..|.+.+ -.|.|+.
T Consensus 41 t~C~pC~~gtY~~~~n~~~~C~~C~~~C~~~~~~~~~Ct~tsdtvC~C~~ 90 (176)
T 3k51_B 41 TTCGPCPPRHYTQFWNYLERCRYCNVLCGEREEEARACHATHNRACRCRT 90 (176)
T ss_dssp CEEEECCTTEECCSCBCCSSCEECCCCCCSSEEEEECCBTTBCCEEEECT
T ss_pred CccccCCCCCeecCCCCCCcCccccCcCCCCCEEeccCcCCCCceeeccC
Confidence 4566777777642 3677775 5532 2355433 2455554
No 79
>3nt1_A Prostaglandin-endoperoxide synthase 2; prostaglandin H2 synthase, cyclooxygenase-2, naproxen, oxido; HET: NAG BOG NPS HEM; 1.73A {Mus musculus} PDB: 3ln1_A* 3mqe_A* 3ln0_A* 3ntb_A* 3q7d_A* 4fm5_A* 1pxx_A* 3pgh_A* 1cx2_A* 4cox_A* 5cox_A* 6cox_A* 3qh0_A* 3qmo_A* 4e1g_A* 3olu_A* 3olt_A* 3hs5_A* 3hs6_A* 3hs7_A* ...
Probab=22.39 E-value=53 Score=25.39 Aligned_cols=34 Identities=21% Similarity=0.568 Sum_probs=23.1
Q ss_pred CCCccCCCCCCCCCCCcccc---CCceeecC-CCccCCCCCC
Q psy4720 7 HEALPCQCDIDGSKSFECEQ---FGGQCQCK-PNVIGRRCEM 44 (95)
Q Consensus 7 ~~C~~C~C~~~gs~~~~C~~---~~G~C~C~-~g~~G~~C~~ 44 (95)
+.|.+=.|...|. |.. ..-.|.|. +||+|..|+.
T Consensus 2 d~C~s~PC~ngG~----C~~~~~~~y~C~C~~~G~~G~~Ce~ 39 (587)
T 3nt1_A 2 NPCCSNPCQNRGE----CMSTGFDQYKCDCTRTGFYGENCTT 39 (587)
T ss_dssp CTTTTCCCCTTCE----EEEEETTEEEEECTTSSEETTTTCE
T ss_pred CCCCCCCCCCCCE----eeCCCCCCeEEecCCCCccCCCCCC
Confidence 3465545665554 653 23479999 9999999984
No 80
>3g5c_A ADAM 22; alpha/beta fold, cross-linked domain, cell adhesion, cleavag of basic residues, EGF-like domain, glycoprotein, membrane, phosphoprotein; HET: NAG; 2.36A {Homo sapiens}
Probab=22.30 E-value=37 Score=25.75 Aligned_cols=27 Identities=30% Similarity=0.790 Sum_probs=21.1
Q ss_pred CCCCCCCCCCccccCCceeecCCCccCCCCCC
Q psy4720 13 QCDIDGSKSFECEQFGGQCQCKPNVIGRRCEM 44 (95)
Q Consensus 13 ~C~~~gs~~~~C~~~~G~C~C~~g~~G~~C~~ 44 (95)
.|+.+|. |+. .+.|.|.+||..+.|+.
T Consensus 455 ~C~~~GV----CNn-~~~CHC~~GwaPP~C~~ 481 (510)
T 3g5c_A 455 ICSGNGV----CSN-ELKCVCNRHWIGSDCNT 481 (510)
T ss_dssp SGGGTEE----EBT-TSCEEECTTEESTTSCE
T ss_pred ccCCCCe----eCC-CCCcCCCCCCCCCCCCC
Confidence 3666663 766 47899999999999985
No 81
>2uwi_A CRME protein; receptor, poxvirus TNF receptor, receptor immunomodulator, TNF alpha receptor; 2.0A {Vaccinia virus}
Probab=21.63 E-value=43 Score=20.72 Aligned_cols=21 Identities=24% Similarity=0.659 Sum_probs=12.7
Q ss_pred CCCCCCCCCCccCCC-----Cceecc
Q psy4720 39 GRRCEMCATGYYGFP-----DCHPCN 59 (95)
Q Consensus 39 G~~C~~C~~G~~g~~-----~C~~C~ 59 (95)
...|..|++|+|-.. .|++|.
T Consensus 35 ~t~C~pC~~gty~~~~n~~~~C~~C~ 60 (142)
T 2uwi_A 35 DTICGHCPSDTFTSIYNRSPWCHSCR 60 (142)
T ss_dssp CCEEEECCTTEECCSSBCCSSCEECC
T ss_pred CCccCcCCCCCCcccCCCCCccCCCc
Confidence 345667777776432 466665
Done!