RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy4720
(95 letters)
>gnl|CDD|238012 cd00055, EGF_Lam, Laminin-type epidermal growth factor-like
domain; laminins are the major noncollagenous
components of basement membranes that mediate cell
adhesion, growth migration, and differentiation; the
laminin-type epidermal growth factor-like module occurs
in tandem arrays; the domain contains 4 disulfide bonds
(loops a-d) the first three resemble epidermal growth
factor (EGF); the number of copies of this domain in
the different forms of laminins is highly variable
ranging from 3 up to 22 copies.
Length = 50
Score = 55.8 bits (135), Expect = 2e-12
Identities = 25/44 (56%), Positives = 30/44 (68%)
Query: 11 PCQCDIDGSKSFECEQFGGQCQCKPNVIGRRCEMCATGYYGFPD 54
PC C+ GS S +C+ GQC+CKPN GRRC+ CA GYYG P
Sbjct: 1 PCDCNGHGSLSGQCDPGTGQCECKPNTTGRRCDRCAPGYYGLPS 44
>gnl|CDD|215680 pfam00053, Laminin_EGF, Laminin EGF-like (Domains III and V).
This family is like pfam00008 but has 8 conserved
cysteines instead of six.
Length = 49
Score = 53.1 bits (128), Expect = 3e-11
Identities = 23/49 (46%), Positives = 26/49 (53%)
Query: 12 CQCDIDGSKSFECEQFGGQCQCKPNVIGRRCEMCATGYYGFPDCHPCNC 60
C C+ GS S C+ GQC CKP V GR C+ C GYYG P C
Sbjct: 1 CDCNPHGSLSDTCDPETGQCLCKPGVTGRHCDRCKPGYYGLPSDPGQGC 49
>gnl|CDD|214543 smart00180, EGF_Lam, Laminin-type epidermal growth factor-like
domai.
Length = 46
Score = 51.5 bits (124), Expect = 1e-10
Identities = 25/42 (59%), Positives = 28/42 (66%)
Query: 12 CQCDIDGSKSFECEQFGGQCQCKPNVIGRRCEMCATGYYGFP 53
C CD GS S C+ GQC+CKPNV GRRC+ CA GYYG
Sbjct: 1 CDCDPGGSASGTCDPDTGQCECKPNVTGRRCDRCAPGYYGDG 42
>gnl|CDD|236436 PRK09263, PRK09263, anaerobic ribonucleoside triphosphate
reductase; Provisional.
Length = 711
Score = 29.8 bits (68), Expect = 0.16
Identities = 17/54 (31%), Positives = 19/54 (35%), Gaps = 11/54 (20%)
Query: 12 CQ-CDIDG-----SKSFECEQFGGQCQCKPNVIGRRCEMCATGYYGFPDCHPCN 59
C C G K F C + G +V R C GY G PD P N
Sbjct: 644 CYECGFTGEFECTEKGFTCPKCGNHDPKTVSVTRRTC-----GYLGNPDARPFN 692
>gnl|CDD|234146 TIGR03211, catechol_2_3, catechol 2,3 dioxygenase. Members of this
family all are enzymes active as catechol 2,3
dioxygenase (1.13.11.2), although some members have
highly significant activity on catechol derivatives such
as 3-methylcatechol, 3-chlorocatechol, and
4-chlorocatechol (see Mars, et al.). This enzyme is also
called metapyrocatechase, as it performs a meta-cleavage
(an extradiol ring cleavage), in contrast to the
ortho-cleavage (intradiol ring cleavage)performed by
catechol 1,2-dioxygenase (EC 1.13.11.1), also called
pyrocatechase [Energy metabolism, Other].
Length = 303
Score = 28.4 bits (64), Expect = 0.40
Identities = 8/19 (42%), Positives = 9/19 (47%)
Query: 39 GRRCEMCATGYYGFPDCHP 57
G R E GY +PD P
Sbjct: 257 GNRNETFGGGYLAYPDWPP 275
>gnl|CDD|201894 pfam01630, Glyco_hydro_56, Hyaluronidase.
Length = 339
Score = 28.1 bits (63), Expect = 0.53
Identities = 10/28 (35%), Positives = 12/28 (42%), Gaps = 3/28 (10%)
Query: 48 GYYGFPDC---HPCNCPFTAVCDSYTGK 72
GYY FPDC +T C + K
Sbjct: 181 GYYLFPDCYNHDYNQPNYTGQCPAVEMK 208
>gnl|CDD|177859 PLN02209, PLN02209, serine carboxypeptidase.
Length = 437
Score = 28.1 bits (62), Expect = 0.68
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 61 PFTAVCDSYTGKLAQVLIQVVTFPNYPSC 89
PF V DSY+G + L+ ++ NY C
Sbjct: 168 PFYVVGDSYSGMIVPALVHEISKGNYICC 196
>gnl|CDD|237664 PRK14294, PRK14294, chaperone protein DnaJ; Provisional.
Length = 366
Score = 27.8 bits (62), Expect = 0.80
Identities = 13/45 (28%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Query: 1 MTISFLHEALPCQCDIDGSKSFECEQFGGQCQCKPNVIGRRCEMC 45
+T+ FL A + +I K CE+ G C+P C C
Sbjct: 124 LTLPFLEAAFGTEKEIRIQKLETCEECHGS-GCEPGTSPTTCPQC 167
>gnl|CDD|237417 PRK13533, PRK13533, 7-cyano-7-deazaguanine tRNA-ribosyltransferase;
Provisional.
Length = 487
Score = 27.5 bits (62), Expect = 0.99
Identities = 9/16 (56%), Positives = 10/16 (62%), Gaps = 3/16 (18%)
Query: 57 PCNCPFTAVCDSYTGK 72
PC+CP VC YT K
Sbjct: 274 PCSCP---VCSKYTPK 286
>gnl|CDD|185216 PRK15316, PRK15316, RatA-like protein; Provisional.
Length = 2683
Score = 27.3 bits (60), Expect = 1.1
Identities = 14/34 (41%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 61 PFTAVCDSYTGKLA--QVLIQVVTFPNYPSCKLW 92
P TA T K A V+ V+T PN P K W
Sbjct: 1965 PLTATLMRDTTKSATMDVIFTVITSPNSPKAKYW 1998
>gnl|CDD|178590 PLN03016, PLN03016, sinapoylglucose-malate O-sinapoyltransferase.
Length = 433
Score = 27.3 bits (60), Expect = 1.3
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 61 PFTAVCDSYTGKLAQVLIQVVTFPNYPSCK 90
P V DSY+G + L+Q ++ NY C+
Sbjct: 166 PLYVVGDSYSGMIVPALVQEISQGNYICCE 195
>gnl|CDD|180270 PRK05809, PRK05809, 3-hydroxybutyryl-CoA dehydratase; Validated.
Length = 260
Score = 27.0 bits (60), Expect = 1.4
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 13 QCDIDGSKSFECEQFG 28
Q DID + + E E FG
Sbjct: 219 QVDIDTAVAIEAEDFG 234
>gnl|CDD|237252 PRK12896, PRK12896, methionine aminopeptidase; Reviewed.
Length = 255
Score = 26.3 bits (59), Expect = 2.6
Identities = 9/22 (40%), Positives = 10/22 (45%), Gaps = 6/22 (27%)
Query: 38 IGRR--CEMCAT----GYYGFP 53
I + E A GYYGFP
Sbjct: 49 IAEKRLEEHGAIPSPEGYYGFP 70
>gnl|CDD|165857 PLN02213, PLN02213, sinapoylglucose-malate O-sinapoyltransferase/
carboxypeptidase.
Length = 319
Score = 25.8 bits (56), Expect = 3.6
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 61 PFTAVCDSYTGKLAQVLIQVVTFPNYPSCK 90
P V DSY+G + L+Q ++ NY C+
Sbjct: 52 PLYVVGDSYSGMIVPALVQEISQGNYICCE 81
>gnl|CDD|219066 pfam06508, ExsB, ExsB. This family includes putative
transcriptional regulators from Bacteria and Archaea.
Length = 137
Score = 24.8 bits (55), Expect = 6.0
Identities = 5/14 (35%), Positives = 8/14 (57%)
Query: 44 MCATGYYGFPDCHP 57
+ + G+PDC P
Sbjct: 120 VNEEDFSGYPDCRP 133
>gnl|CDD|227510 COG5183, SSM4, Protein involved in mRNA turnover and stability
[RNA processing and modification].
Length = 1175
Score = 25.3 bits (55), Expect = 6.4
Identities = 9/24 (37%), Positives = 10/24 (41%), Gaps = 5/24 (20%)
Query: 40 RRCEMCATGYYGFPD---CHPCNC 60
R C +C T D HPC C
Sbjct: 13 RSCRICRTE--DIRDDPLFHPCKC 34
>gnl|CDD|184685 PRK14453, PRK14453, chloramphenicol/florfenicol resistance protein;
Provisional.
Length = 347
Score = 24.7 bits (54), Expect = 8.1
Identities = 10/23 (43%), Positives = 10/23 (43%), Gaps = 5/23 (21%)
Query: 30 QCQCKPNVIGRRCEMCATGYYGF 52
QC C G C CATG G
Sbjct: 107 QCGC-----GFGCRFCATGSIGL 124
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.328 0.142 0.524
Gapped
Lambda K H
0.267 0.0632 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,477,627
Number of extensions: 326177
Number of successful extensions: 310
Number of sequences better than 10.0: 1
Number of HSP's gapped: 310
Number of HSP's successfully gapped: 25
Length of query: 95
Length of database: 10,937,602
Length adjustment: 62
Effective length of query: 33
Effective length of database: 8,187,654
Effective search space: 270192582
Effective search space used: 270192582
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (24.4 bits)