RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4720
(95 letters)
>1klo_A Laminin; glycoprotein; 2.10A {Mus musculus} SCOP: g.3.11.2 g.3.11.2
g.3.11.2 PDB: 1npe_B 1tle_A
Length = 162
Score = 52.1 bits (125), Expect = 5e-10
Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Query: 10 LPCQCDIDGSKSFE--CEQFGGQCQCKPNVIGRRCEMCATGYYGFPDCHPC 58
C C+ G+ + C GQCQC P+V GR C C GYY C
Sbjct: 110 KACACNPYGTVQQQSSCNPVTGQCQCLPHVSGRDCGTCDPGYYNLQSGQGC 160
Score = 41.7 bits (98), Expect = 4e-06
Identities = 23/77 (29%), Positives = 33/77 (42%), Gaps = 16/77 (20%)
Query: 11 PCQCD--IDGSKSFECEQFGGQC-QCKPNVIGRRCEMCATGYYGFP-------DCHPCNC 60
PCQC+ ID + C + G+C +C N G C+ C G++G P C C C
Sbjct: 55 PCQCNDNIDPNAVGNCNRLTGECLKCIYNTAGFYCDRCKEGFFGNPLAPNPADKCKACAC 114
Query: 61 ------PFTAVCDSYTG 71
+ C+ TG
Sbjct: 115 NPYGTVQQQSSCNPVTG 131
Score = 37.9 bits (88), Expect = 1e-04
Identities = 21/76 (27%), Positives = 28/76 (36%), Gaps = 15/76 (19%)
Query: 12 CQCDIDGSKSFECEQFGGQC-QCKPNVIGRRCEMCATGYYGFP--------DCHPCNCP- 61
C C S + + C C G+RCE+C GY+G P C PC C
Sbjct: 1 CPCPGGSSCAIVPKTKEVVCTHCPTGTAGKRCELCDDGYFGDPLGSNGPVRLCRPCQCND 60
Query: 62 -----FTAVCDSYTGK 72
C+ TG+
Sbjct: 61 NIDPNAVGNCNRLTGE 76
>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A
{Mus musculus}
Length = 525
Score = 48.9 bits (116), Expect = 2e-08
Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 10/71 (14%)
Query: 11 PCQCDIDGSKSFE--CEQFGGQCQCKPNVIGRRCEMCATGYYGFPD----CHPCNCP--- 61
C C+ G+ C+ G C CK V G+RC+ C ++G + C PC+C
Sbjct: 440 SCACNPLGTIPGGNPCDSETGYCYCKRLVTGQRCDQCLPQHWGLSNDLDGCRPCDCDLGG 499
Query: 62 -FTAVCDSYTG 71
C +G
Sbjct: 500 ALNNSCSEDSG 510
Score = 46.2 bits (109), Expect = 2e-07
Identities = 24/71 (33%), Positives = 29/71 (40%), Gaps = 11/71 (15%)
Query: 12 CQCDIDGSKSFECEQFGGQCQCKPNVIGRRCEMCATGYYGFP-----DCHPCNC------ 60
DG F GQC+CK +V G RC++C G+Y C C C
Sbjct: 390 NGGICDGYTDFSVGLIAGQCRCKLHVEGERCDVCKEGFYDLSAEDPYGCKSCACNPLGTI 449
Query: 61 PFTAVCDSYTG 71
P CDS TG
Sbjct: 450 PGGNPCDSETG 460
Score = 40.1 bits (93), Expect = 3e-05
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 11 PCQCDIDGSKSFECEQFGGQCQCKPNVIGRRCE 43
PC CD+ G+ + C + GQC C P++IGR+C
Sbjct: 492 PCDCDLGGALNNSCSEDSGQCSCLPHMIGRQCN 524
Score = 34.7 bits (79), Expect = 0.002
Identities = 16/70 (22%), Positives = 23/70 (32%), Gaps = 10/70 (14%)
Query: 14 CDIDGSKSFECEQFGGQCQCKPNVIGRRCEMCATGYYGFPD----------CHPCNCPFT 63
+DG G C C+ N G CE+C Y+ P C CNC
Sbjct: 264 APVDGVNEEVEGMVHGHCMCRHNTKGLNCELCMDFYHDLPWRPAEGRNSNACKKCNCNEH 323
Query: 64 AVCDSYTGKL 73
+ + +
Sbjct: 324 SSSCHFDMAV 333
Score = 30.0 bits (67), Expect = 0.082
Identities = 12/63 (19%), Positives = 19/63 (30%)
Query: 10 LPCQCDIDGSKSFECEQFGGQCQCKPNVIGRRCEMCATGYYGFPDCHPCNCPFTAVCDSY 69
CQ + G +C+ F Q + CE C G + C+
Sbjct: 346 DNCQHNTMGRNCEQCKPFYFQHPERDIRDPNLCEPCTCDPAGSENGGICDGYTDFSVGLI 405
Query: 70 TGK 72
G+
Sbjct: 406 AGQ 408
Score = 29.7 bits (66), Expect = 0.13
Identities = 16/59 (27%), Positives = 22/59 (37%), Gaps = 8/59 (13%)
Query: 12 CQCDIDGSKSFECEQFGGQCQCKPNVIGRRCEMCATGYYGFPD--------CHPCNCPF 62
C D+ + G C+ N +GR CE C Y+ P+ C PC C
Sbjct: 327 CHFDMAVFLATGNVSGGVCDNCQHNTMGRNCEQCKPFYFQHPERDIRDPNLCEPCTCDP 385
>4aqt_A Laminin subunit gamma-1; cell adhesion; HET: NAG BMA; 3.20A {Mus
musculus}
Length = 375
Score = 43.6 bits (102), Expect = 1e-06
Identities = 11/52 (21%), Positives = 17/52 (32%), Gaps = 3/52 (5%)
Query: 13 QCDIDGSKSFECEQFGGQCQCKPNVIGRRCEMCATGYYGFPD---CHPCNCP 61
+C D G C+ N G +CE C ++ + C P
Sbjct: 319 ECYFDPELYRSTGHGGHCTNCRDNTDGAKCERCRENFFRLGNTEACSPAAAH 370
Score = 40.1 bits (93), Expect = 2e-05
Identities = 17/61 (27%), Positives = 24/61 (39%), Gaps = 10/61 (16%)
Query: 11 PCQCDIDGSKSFECEQFGGQCQCKPNVIGRRCEMCATGYYGFP----------DCHPCNC 60
C+C+ S+ + E C CK N G CE C + P +C PC+C
Sbjct: 254 RCKCNGHASECVKNEFDKLMCNCKHNTYGVDCEKCLPFFNDRPWRRATAESASECLPCDC 313
Query: 61 P 61
Sbjct: 314 N 314
>2y38_A Laminin subunit alpha-5; structural protein, cell adhesion,
basement membrane; HET: NAG; 2.90A {Mus musculus}
Length = 403
Score = 41.0 bits (95), Expect = 1e-05
Identities = 11/59 (18%), Positives = 20/59 (33%), Gaps = 8/59 (13%)
Query: 11 PCQCDIDGSKSFECEQFGGQCQCKPNVIGRRCEMCATGYYGFPD--------CHPCNCP 61
+ + ++ + G C+ + G CE C G++ PD C P
Sbjct: 340 VDRREASQNQDNVYQGGGVCLDCQHHTTGINCERCLPGFFRAPDQPLDSPHVCRPAAAH 398
Score = 32.9 bits (74), Expect = 0.008
Identities = 21/106 (19%), Positives = 32/106 (30%), Gaps = 13/106 (12%)
Query: 3 ISFLHEALPCQCD---IDGSKSFECEQFGGQCQCKPNVIGRRCEMCATGYYGFP------ 53
I + C C + F QC C+ N G C+ C G+ P
Sbjct: 257 IKDISIGGRCVCHGHADVCDAKDPLDPFRLQCACQHNTCGGSCDRCCPGFNQQPWKPATT 316
Query: 54 ----DCHPCNCPFTAVCDSYTGKLAQVLIQVVTFPNYPSCKLWYNC 95
+C CNC A Y ++ + Y + +C
Sbjct: 317 DSANECQSCNCHGHAYDCYYDPEVDRREASQNQDNVYQGGGVCLDC 362
>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET:
NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*
Length = 423
Score = 37.8 bits (87), Expect = 2e-04
Identities = 15/62 (24%), Positives = 20/62 (32%), Gaps = 1/62 (1%)
Query: 11 PCQCDIDGSKSFECEQFGGQCQCKPNVIGRRCEM-CATGYYGFPDCHPCNCPFTAVCDSY 69
C C C C G +C C G+YG C+C +CD +
Sbjct: 245 RCSGQEGCKSYVFCLPDPYGCSCATGWKGLQCNEACHPGFYGPDCKLRCSCNNGEMCDRF 304
Query: 70 TG 71
G
Sbjct: 305 QG 306
Score = 31.2 bits (70), Expect = 0.029
Identities = 12/41 (29%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 24 CEQFGGQCQCKPNVIGRRCEM-CATGYYGFPDCHPCNCPFT 63
C + G+C C P +GR CE C +G C+
Sbjct: 211 CHEDTGECICPPGFMGRTCEKACELHTFGRTCKERCSGQEG 251
Score = 26.6 bits (58), Expect = 1.2
Identities = 8/50 (16%), Positives = 13/50 (26%), Gaps = 1/50 (2%)
Query: 24 CEQFGGQCQCKPNVIGRRCEMCATGYYGFP-DCHPCNCPFTAVCDSYTGK 72
++ G C +G + C VC TG+
Sbjct: 168 SARYIGGNLFTSAFTRLIVRRCEAQKWGPECNHLCTACMNNGVCHEDTGE 217
Score = 24.7 bits (53), Expect = 6.7
Identities = 7/34 (20%), Positives = 9/34 (26%), Gaps = 1/34 (2%)
Query: 28 GGQCQCKPNVIGRRCEM-CATGYYGFPDCHPCNC 60
C C P G +CE P +
Sbjct: 304 FQGCLCSPGWQGLQCEREGIPRMTPKIVDLPDHI 337
>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo
sapiens}
Length = 426
Score = 34.0 bits (77), Expect = 0.004
Identities = 14/59 (23%), Positives = 23/59 (38%), Gaps = 2/59 (3%)
Query: 2 TISFLHEALPCQCDIDGSKSFECEQFGGQCQCKPNVIGRRCEMCATGYYGFPDCHPCNC 60
IS + C+C++ + + C+C+ N G C C Y G P P +
Sbjct: 287 AISDIKVRGRCKCNLHATVC-VYDNSKLTCECEHNTTGPDCGKCKKNYQGRP-WSPGSY 343
Score = 32.5 bits (73), Expect = 0.011
Identities = 13/62 (20%), Positives = 18/62 (29%), Gaps = 1/62 (1%)
Query: 11 PCQCDIDGSKSFECEQFGGQCQCKPNVIGRRCEMCATGYYGFPDCHPCNCPFTAVCDSYT 70
C I + C+ CQ +C Y G C C C S +
Sbjct: 353 ACIPSISSIGTNVCDNELLHCQNGGTCHNNVRCLCPAAYTG-ILCEKLRCEEAGSCGSDS 411
Query: 71 GK 72
G+
Sbjct: 412 GQ 413
Score = 29.8 bits (66), Expect = 0.11
Identities = 6/32 (18%), Positives = 8/32 (25%), Gaps = 4/32 (12%)
Query: 11 PCQCDIDGSKSFECEQFGGQCQCKPNVIGRRC 42
+C+ GS C GQ
Sbjct: 398 KLRCEEAGS----CGSDSGQGAPPHGTHHHHH 425
>3tbd_A Netrin-G2, laminet-2; laminin N-terminal domain, domain VI,
LE-domain, N neuronal cell adhesion molecule, netrin G
ligand 2, nervous system; HET: NAG; 1.80A {Homo sapiens}
PDB: 3zyg_A* 3zyi_B*
Length = 338
Score = 33.7 bits (76), Expect = 0.004
Identities = 8/47 (17%), Positives = 11/47 (23%), Gaps = 15/47 (31%)
Query: 29 GQCQCKPNVIGRRCEMCATGYYGFP---------------DCHPCNC 60
QC+C+ N G C C + C
Sbjct: 286 LQCECEHNTTGPDCGKCKKNFRTRSWRAGSYLPLPHGSPNACAAAGS 332
>1skz_A Antistasin; factor XA inhibitor, serine protease inhibitor,
thrombosis; 1.90A {Haementeria officinalis} SCOP:
g.3.15.1 g.3.15.1
Length = 119
Score = 31.9 bits (72), Expect = 0.009
Identities = 11/54 (20%), Positives = 17/54 (31%), Gaps = 6/54 (11%)
Query: 10 LPCQCDIDGS-KSFECEQFGGQCQCKPNVIGRRCEMCATGYYGFP--DCHPCNC 60
+ CDI + C + +C CK ++ C C C C
Sbjct: 58 MKATCDISECPEGMMCSRLTNKCDCKIDI---NCRKTCPNGLKRDKLGCEYCEC 108
Score = 30.8 bits (69), Expect = 0.028
Identities = 11/57 (19%), Positives = 14/57 (24%), Gaps = 5/57 (8%)
Query: 9 ALPCQCDIDGSKS-FECEQFGGQCQCKPNVIGRRCEMCATGYYGFPD-CHPCNCPFT 63
C+ G C +C C R C G+ C C C
Sbjct: 3 PFGPGCEEAGCPEGSACNIITDRCTCSG---VRCRVHCPHGFQRSRYGCEFCKCRLE 56
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion,
pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo
sapiens} PDB: 3k71_B* 3k72_B*
Length = 687
Score = 31.6 bits (71), Expect = 0.022
Identities = 15/65 (23%), Positives = 20/65 (30%), Gaps = 4/65 (6%)
Query: 11 PCQCDIDGSKSFECEQFG----GQCQCKPNVIGRRCEMCATGYYGFPDCHPCNCPFTAVC 66
C+C C G G C+C IG+ CE G C ++
Sbjct: 424 ECRCRDQSRDRSLCHGKGFLECGICRCDTGYIGKNCECQTQGRSSQELEGSCRKDNNSII 483
Query: 67 DSYTG 71
S G
Sbjct: 484 CSGLG 488
Score = 30.1 bits (67), Expect = 0.083
Identities = 11/60 (18%), Positives = 15/60 (25%), Gaps = 1/60 (1%)
Query: 11 PCQCDIDGSKSFECEQFGGQCQCKPNVIGRRCEMCATGYYGFPDCHPCNCPFTAVCDSYT 70
F G+C+C P G C+ C G + C C
Sbjct: 520 ERYNGQVCGGPGRGLCFCGKCRCHPGFEGSACQ-CERTTEGCLNPRRVECSGRGRCRCNV 578
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL
receptor-like protein, dickko YWTD B-propeller,
signaling protein; HET: NAG; 2.80A {Homo sapiens}
Length = 619
Score = 29.0 bits (64), Expect = 0.23
Identities = 11/61 (18%), Positives = 17/61 (27%), Gaps = 6/61 (9%)
Query: 1 MTISFLHEALPCQCDIDGSKSFECEQFGGQCQCKPNVIGRRCEMCATGYYGFPDCHPCNC 60
M + + + ++ C C G RC C G+ D C
Sbjct: 565 MGLKATNVHRVIGSNPCAEENGGCSHL-----CLYRPQGLRC-ACPIGFELISDMKTCIV 618
Query: 61 P 61
P
Sbjct: 619 P 619
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell
adhesion, DI mutation, glycoprotein, HOST-virus
interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo
sapiens} PDB: 3ije_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Length = 690
Score = 28.1 bits (62), Expect = 0.35
Identities = 12/61 (19%), Positives = 20/61 (32%), Gaps = 1/61 (1%)
Query: 11 PCQCDIDGSKSFECEQFGGQCQCKPNVIGRRCEMCATGYYGFPDCHPCNCPFTAVCDSYT 70
+ + + G C+C P +G +CE C+ Y C+ S
Sbjct: 440 QAEPNSHRCNNGNGTFECGVCRCGPGWLGSQCE-CSEEDYRPSQQDECSPREGQPVCSQR 498
Query: 71 G 71
G
Sbjct: 499 G 499
Score = 26.2 bits (57), Expect = 1.9
Identities = 15/67 (22%), Positives = 20/67 (29%), Gaps = 8/67 (11%)
Query: 11 PCQCDIDG---SKSFECEQFG----GQCQCKPNVIGRRCEMCATGYYGFPDCHPCNCPFT 63
C+CD K C G G C C + G C C T + C
Sbjct: 520 YCECDDFSCVRYKGEMCSGHGQCSCGDCLCDSDWTGYYCN-CTTRTDTCMSSNGLLCSGR 578
Query: 64 AVCDSYT 70
C+ +
Sbjct: 579 GKCECGS 585
Score = 25.0 bits (54), Expect = 5.0
Identities = 8/41 (19%), Positives = 11/41 (26%), Gaps = 1/41 (2%)
Query: 29 GQCQCKPNVIGRRCEM-CATGYYGFPDCHPCNCPFTAVCDS 68
GQC C + G+ C + C C
Sbjct: 504 GQCVCHSSDFGKITGKYCECDDFSCVRYKGEMCSGHGQCSC 544
>2atm_A Hyaluronoglucosaminidase; beta-alpha-barrels, hydrolase; HET: MES;
2.00A {Vespula vulgaris}
Length = 331
Score = 27.2 bits (60), Expect = 0.86
Identities = 7/25 (28%), Positives = 11/25 (44%), Gaps = 6/25 (24%)
Query: 48 GYYGFPDCHPCNCPFTAVCDSYTGK 72
GYYG+P C F ++ +
Sbjct: 178 GYYGYPYC------FNMSPNNLVPE 196
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein;
signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG;
1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Length = 628
Score = 27.1 bits (59), Expect = 0.95
Identities = 15/68 (22%), Positives = 23/68 (33%), Gaps = 2/68 (2%)
Query: 21 SFECEQFGGQCQ--CKPNVIGRRCEMCATGYYGFPDCHPCNCPFTAVCDSYTGKLAQVLI 78
EC G C C +G C Y D C+ P T + S + +++I
Sbjct: 265 WNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTCSAPTTFLLFSQKSAINRMVI 324
Query: 79 QVVTFPNY 86
P+
Sbjct: 325 DEQQSPDI 332
>2pe4_A Hyaluronidase-1; hyaluronan, EGF-like domain, hydrolase; HET: NAG
BMA MAN; 2.00A {Homo sapiens}
Length = 424
Score = 26.9 bits (59), Expect = 1.0
Identities = 12/25 (48%), Positives = 17/25 (68%), Gaps = 4/25 (16%)
Query: 48 GYYGFPDCHPCNCPFTAVCDSYTGK 72
G+YGFPDC+ N F + +YTG+
Sbjct: 181 GFYGFPDCY--NYDFLS--PNYTGQ 201
>1fcq_A Hyaluronoglucosaminidase; 7-stranded (beta/alpha) TIM barrel,
glycosidase family 56, allergen, hydrolase; 1.60A {Apis
mellifera} SCOP: c.1.8.9 PDB: 1fcu_A 1fcv_A* 2j88_A
Length = 350
Score = 26.8 bits (59), Expect = 1.1
Identities = 5/9 (55%), Positives = 7/9 (77%)
Query: 48 GYYGFPDCH 56
GYY +P C+
Sbjct: 182 GYYAYPYCY 190
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics,
PSI-biology, northeast structural genom consortium,
NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Length = 345
Score = 26.3 bits (57), Expect = 1.6
Identities = 8/12 (66%), Positives = 9/12 (75%)
Query: 57 PCNCPFTAVCDS 68
PCNC + VCDS
Sbjct: 316 PCNCSYPLVCDS 327
>1h7b_A Anaerobic ribonucleotide-triphosphate reductase large chain;
oxidoreductase, allosteric regulation, substrate
specificity; 2.45A {Bacteriophage T4} SCOP: c.7.1.3 PDB:
1h79_A* 1h7a_A* 1h78_A 1hk8_A*
Length = 605
Score = 25.8 bits (56), Expect = 2.6
Identities = 8/60 (13%), Positives = 19/60 (31%), Gaps = 3/60 (5%)
Query: 33 CKPNVIGRRCEMCATGYYGFPDCHPCNCPFTAVCDSYTGKLAQVLIQVVTFPNYPSCKLW 92
N+ +C C + + P + C C K + + + P+ + +
Sbjct: 534 FGVNMPVDKCFTCGSTHEMTPTENGFVCSI---CGETDPKKMNTIRRTCAYLGNPNERGF 590
Score = 24.6 bits (53), Expect = 6.5
Identities = 12/44 (27%), Positives = 13/44 (29%), Gaps = 5/44 (11%)
Query: 16 IDGSKSFECEQFGGQCQCKPNVIGRRCEMCATGYYGFPDCHPCN 59
F C G K N I R C Y G P+ N
Sbjct: 553 TPTENGFVCSICGETDPKKMNTIRRTC-----AYLGNPNERGFN 591
>3v4v_B Integrin beta-7; cell adhesion, madcam-1, membrane; HET: NAG BMA
MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_B*
Length = 503
Score = 25.7 bits (55), Expect = 2.9
Identities = 12/37 (32%), Positives = 14/37 (37%), Gaps = 5/37 (13%)
Query: 12 CQC-DIDGSKSFECEQFG----GQCQCKPNVIGRRCE 43
C C D + G G C C P +GR CE
Sbjct: 457 CNCSDTQPQAPHCSDGQGHLQCGVCSCAPGRLGRLCE 493
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 25.4 bits (55), Expect = 3.6
Identities = 8/27 (29%), Positives = 11/27 (40%), Gaps = 6/27 (22%)
Query: 4 SFLHEALPCQCDIDGSKSFECEQFGGQ 30
S L A+ +G+ FGGQ
Sbjct: 143 SALFRAVG-----EGNAQL-VAIFGGQ 163
>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor
complex, blood coagulation, CL PAIR of basic residues,
disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A
{Homo sapiens}
Length = 317
Score = 24.7 bits (54), Expect = 5.2
Identities = 13/53 (24%), Positives = 17/53 (32%), Gaps = 1/53 (1%)
Query: 14 CDIDGSKSFECEQFGGQCQCKPNVIGRRCEMCATGYYGFPDCHPCNCPFTAVC 66
C++ ++ G Q C P C CA GY D C C
Sbjct: 39 CELAKNECHPERTDGCQHFCLPGQESYTCS-CAQGYRLGEDHKQCVPHDQCAC 90
>3t3p_B Integrin beta-3; integrin, cell adhesion, blood clotting,
fibrinogen, platele; HET: NAG BMA MAN; 2.20A {Homo
sapiens} PDB: 3t3m_B* 3nig_B* 3nif_B* 3nid_B* 2vdr_B*
2vc2_B* 2vdk_B* 2vdm_B* 2vdn_B* 2vdl_B* 2vdp_B* 2vdq_B*
2vdo_B* 3fcu_B* 1txv_B* 1ty3_B* 1ty5_B* 1ty6_B* 1ty7_B*
1tye_B*
Length = 472
Score = 24.5 bits (52), Expect = 7.9
Identities = 10/37 (27%), Positives = 15/37 (40%), Gaps = 4/37 (10%)
Query: 11 PCQCDIDGSKSFECEQFG----GQCQCKPNVIGRRCE 43
CQ + + G G C+C P +G +CE
Sbjct: 436 ACQAQAEPNSHRCNNGNGTFECGVCRCGPGWLGSQCE 472
>2vhf_A Ubiquitin carboxyl-terminal hydrolase CYLD; cytokine signalling,
linkage specificity, deubiquitinating enzyme, Lys63-
linked, anti-oncogene; 2.8A {Homo sapiens}
Length = 374
Score = 24.3 bits (52), Expect = 9.0
Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Query: 3 ISFLHEALPCQCDIDGSKS-FECEQFGGQCQCKPNVIGRRCEMC 45
I+ L E P QC I G + +EC + I + C+ C
Sbjct: 195 ITDLLEDTPRQCRICGGLAMYECRECYDDPDISAGKIKQFCKTC 238
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.328 0.142 0.524
Gapped
Lambda K H
0.267 0.0548 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,537,114
Number of extensions: 82748
Number of successful extensions: 567
Number of sequences better than 10.0: 1
Number of HSP's gapped: 486
Number of HSP's successfully gapped: 202
Length of query: 95
Length of database: 6,701,793
Length adjustment: 62
Effective length of query: 33
Effective length of database: 4,970,691
Effective search space: 164032803
Effective search space used: 164032803
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (23.8 bits)