RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4720
         (95 letters)



>d1kloa3 g.3.11.2 (A:122-172) Laminin gamma1 chain {Mouse (Mus
          musculus) [TaxId: 10090]}
          Length = 51

 Score = 49.1 bits (117), Expect = 3e-10
 Identities = 19/49 (38%), Positives = 22/49 (44%), Gaps = 2/49 (4%)

Query: 12 CQCDIDGSKSF--ECEQFGGQCQCKPNVIGRRCEMCATGYYGFPDCHPC 58
          C C+  G+      C    GQCQC P+V GR C  C  GYY       C
Sbjct: 1  CACNPYGTVQQQSSCNPVTGQCQCLPHVSGRDCGTCDPGYYNLQSGQGC 49


>d1kloa2 g.3.11.2 (A:66-121) Laminin gamma1 chain {Mouse (Mus
          musculus) [TaxId: 10090]}
          Length = 56

 Score = 40.3 bits (94), Expect = 8e-07
 Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 5/52 (9%)

Query: 12 CQCDIDGSKSFECEQFGGQC-QCKPNVIGRRCEMCATGYYGFP----DCHPC 58
          C  +ID +    C +  G+C +C  N  G  C+ C  G++G P        C
Sbjct: 3  CNDNIDPNAVGNCNRLTGECLKCIYNTAGFYCDRCKEGFFGNPLAPNPADKC 54


>d1kloa1 g.3.11.2 (A:11-65) Laminin gamma1 chain {Mouse (Mus
          musculus) [TaxId: 10090]}
          Length = 55

 Score = 29.5 bits (66), Expect = 0.013
 Identities = 15/53 (28%), Positives = 20/53 (37%), Gaps = 6/53 (11%)

Query: 12 CQCDIDGSKSFECEQFGGQC-QCKPNVIGRRCEMCATGYYGFP-----DCHPC 58
          C C    S +   +     C  C     G+RCE+C  GY+G P         C
Sbjct: 1  CPCPGGSSCAIVPKTKEVVCTHCPTGTAGKRCELCDDGYFGDPLGSNGPVRLC 53


>d1fcqa_ c.1.8.9 (A:) Bee venom hyaluronidase {Honeybee (Apis
           mellifera) [TaxId: 7460]}
          Length = 321

 Score = 24.4 bits (53), Expect = 2.3
 Identities = 5/9 (55%), Positives = 7/9 (77%)

Query: 48  GYYGFPDCH 56
           GYY +P C+
Sbjct: 173 GYYAYPYCY 181


>d2bura1 b.3.6.1 (A:4-200) Protocatechuate-3,4-dioxygenase, alpha
           chain {Acinetobacter calcoaceticus, adp1 [TaxId: 471]}
          Length = 202

 Score = 23.5 bits (50), Expect = 4.6
 Identities = 12/52 (23%), Positives = 17/52 (32%)

Query: 12  CQCDIDGSKSFECEQFGGQCQCKPNVIGRRCEMCATGYYGFPDCHPCNCPFT 63
            Q D +G    + +  G Q        GR      TG++ F    P   P  
Sbjct: 68  WQADTNGVYPSQADTQGKQVDPNFLGWGRTGADFGTGFWSFNTIKPGAVPGR 119


>d2bw3a1 a.270.1.1 (A:79-162) Transposase Hermes, dimerisation
          domain {House fly (Musca domestica) [TaxId: 7370]}
          Length = 84

 Score = 22.9 bits (49), Expect = 5.4
 Identities = 8/23 (34%), Positives = 13/23 (56%), Gaps = 1/23 (4%)

Query: 59 NC-PFTAVCDSYTGKLAQVLIQV 80
          +C PF+AV  S    + +  I+V
Sbjct: 27 DCRPFSAVSGSGFIDMIKFFIKV 49


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.328    0.142    0.524 

Gapped
Lambda     K      H
   0.267   0.0607    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 410,500
Number of extensions: 19572
Number of successful extensions: 131
Number of sequences better than 10.0: 1
Number of HSP's gapped: 124
Number of HSP's successfully gapped: 59
Length of query: 95
Length of database: 2,407,596
Length adjustment: 58
Effective length of query: 37
Effective length of database: 1,611,256
Effective search space: 59616472
Effective search space used: 59616472
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 47 (22.1 bits)