BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy4724
         (1650 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3VKH|A Chain A, X-Ray Structure Of A Functional Full-Length Dynein Motor
            Domain
 pdb|3VKH|B Chain B, X-Ray Structure Of A Functional Full-Length Dynein Motor
            Domain
          Length = 3367

 Score =  235 bits (600), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 188/756 (24%), Positives = 350/756 (46%), Gaps = 75/756 (9%)

Query: 746  EVYDRVIKIVGPKKAKLAEAEADYAVQMEKLNSKRA---QLATVLGKLQALRDELA---- 798
            E  +R  K  GP   K A A+  Y+  ++++   R    QL     +L+  +DE+     
Sbjct: 2102 ETVNRASKACGPL-VKWATAQTYYSEILDRIKPLREEVEQLENAANELKLKQDEIVATIT 2160

Query: 799  --QKS------------KDKKELEDQIELCKQKLERAEKLIGGLGGEKTRWSEASANLSK 844
              +KS            ++ ++++ +    K K++R+  L+  L  E+ RW + S N + 
Sbjct: 2161 ALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSENFNT 2220

Query: 845  ALVNCIGDILICAGIITYLGAFTVDFRNDLIEQWKSLSSQEQMPFTLSFSMITTLGDAVK 904
             +   +GD+++ +  + Y+G F  +FR DL+ +W        + F    S+ + L    +
Sbjct: 2221 QMSTVVGDVVLASAFLAYIGFFDQNFRTDLMRKWMIRLDSVGIKFKSDLSVPSFLSKPEE 2280

Query: 905  IRSWNINGLPVDNFSIENGIILFNSNKWPLLIDPQGQANKWLKN-VEKGNLSVVKLTDAT 963
              +W+ N LP D   IEN I+L   N++PL+IDP GQA ++L N      ++     D++
Sbjct: 2281 RLNWHANSLPSDELCIENAIMLKRFNRYPLVIDPSGQAMEFLMNQYADKKITKTSFLDSS 2340

Query: 964  LLRTLERAIRTGTAVLLENIQETIDSSLEPVLLKSYYKIQNQLIMTLNNKEIEYNIKFRL 1023
             ++ LE A+R G  +L++++ E ID  L PVL K   K   ++++ L +++++++  F +
Sbjct: 2341 FMKNLESALRFGCPLLVQDV-ENIDPVLNPVLNKEIRKKGGRILIRLGDQDVDFSPSFMI 2399

Query: 1024 YITTRLKNPHYIPEILTKITLINFMITPQGLQNQLLGIVVAKEKPDLETKKNELIIESAN 1083
            ++ TR    H+ P++ +++T +NF +TP  LQ+Q L   +  E+PD   K+++L+     
Sbjct: 2400 FLFTRDPTAHFTPDLCSRVTFVNFTVTPSSLQSQCLHEALKTERPDTHKKRSDLLKIQGE 2459

Query: 1084 NKKILKETEDKILEVLSSSQGNILEDESAVQILTSSKVLSAEITAKQEISSRTEKEIDDA 1143
             +  L+  E  +L  LS + GNIL+D+S +  L + K  + EI  K E +    +EI + 
Sbjct: 2460 FQVKLRILEKSLLNALSQASGNILDDDSVISTLETLKKETTEIALKVEETETVMQEISEV 2519

Query: 1144 RMMYIPVSKHSSVLFFCCAELSNIDPMYQYSLNWFINL-YVQSIEGSEKTDQLD--KRLK 1200
              +Y P++   S ++F   ELS    +YQ+SL  F+++ Y          D+ D  +RL 
Sbjct: 2520 SALYNPMALSCSRVYFAMEELSQFH-LYQFSLRAFLDIFYNLLNNNPNLVDKKDPNERLV 2578

Query: 1201 ILMNHFTYSIYKNICRSLFEDHKLVFSFVLC-TGIQRSNETLDETLFKYFLTGSIDLT-- 1257
             L        +  + R+L  D KL F+  L    ++ ++  ++E+ + + L G  +LT  
Sbjct: 2579 YLSKDIFSMTFNRVTRTLLNDDKLTFALQLTIISVKGTSNEIEESEWDFLLKGGDNLTSI 2638

Query: 1258 ------MDS--PNPSPSWLSNKTWTDIIQISKLPQLGDLKASVKTKNSEWKSYYDSKT-- 1307
                  +DS        WL       I    ++P    L   ++  +S+WK ++      
Sbjct: 2639 KETIPQLDSLLSTTQQKWL-------ICLRQQVPSFSKLVDHIQQNSSDWKQFFGKDQVG 2691

Query: 1308 ----PEKERVSYVQ--DKSDICVLNILKII-----RPDKVIQGIQIYVSKNLGEQYIVSP 1356
                PE   V+  Q  ++    V N  KI+       D+V+Q    +V    GE ++ + 
Sbjct: 2692 EPIIPESWIVAQAQLSNQQSTIVSNFRKILLMKAFHSDRVLQYSHSFVCSVFGEDFLNTQ 2751

Query: 1357 PFSLKQSYD-DSNCCTPLIFILSAGSDPMDLLLKFNSDMNAAKPLTVSLGQGIQSYIQSL 1415
               +    + +    +PL+     G D            +    L + L +  +S+    
Sbjct: 2752 ELDMANIVEKEVKSSSPLLLCSVPGYDA----------SSKVDDLALQLHKQYKSFAI-- 2799

Query: 1416 PLNNTPEIFGLHENADLTKNFNETRLVLGNILLCAQ 1451
                +PE F L E +      + T ++L NI L  Q
Sbjct: 2800 ---GSPEGFELAEKSIYAAAKSGTWVLLKNIHLAPQ 2832



 Score = 97.1 bits (240), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 56/174 (32%), Positives = 91/174 (52%), Gaps = 10/174 (5%)

Query: 360  HKLVFSFVLCTGQG-EIAKSYIDEGLKKGLWIVLQNCHVAKSWMKELERICAEVIVPANT 418
            HK   SF + + +G E+A+  I    K G W++L+N H+A  W+ +LE+    +    + 
Sbjct: 2791 HKQYKSFAIGSPEGFELAEKSIYAAAKSGTWVLLKNIHLAPQWLVQLEKKLHSL----SP 2846

Query: 419  HQEFRLWLTSYPSTTFPVSVLENGIKMIIEPPKGIKNNLLRSYTNDPINSDDFYNDSKNV 478
            H  FRL++TS      P ++L        E P G+K NLL ++   P    D     K  
Sbjct: 2847 HPSFRLFMTSEIHPALPANLLRMSNVFSYENPPGVKANLLHTFIGIPATRMD-----KQP 2901

Query: 479  AAWHKLLFSLCLFHAVVQERKQYGPLGWNIPYEFNLSDLNISMKQLQMFLNDYT 532
            A   ++ F L  FHA++QER +Y PLGW   +EFN +DL  ++  +  +++ Y+
Sbjct: 2902 AERSRIYFLLAWFHAIIQERLRYIPLGWTKFFEFNDADLRGALDSIDYWVDLYS 2955



 Score = 87.0 bits (214), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 47/148 (31%), Positives = 77/148 (52%), Gaps = 9/148 (6%)

Query: 577  KKGLWIVLQNCHVAKSWMKELERICAEVIVPANTHQEFRLWLTSYPSTTFPVSVLENGIK 636
            K G W++L+N H+A  W+ +LE+    +    + H  FRL++TS      P ++L     
Sbjct: 2817 KSGTWVLLKNIHLAPQWLVQLEKKLHSL----SPHPSFRLFMTSEIHPALPANLLRMSNV 2872

Query: 637  MIIEPPKGIKNNLFRSYTNDPINSDDFYNDSKNVAAWHKLLFSLCLFHAVVQERKQYGPL 696
               E P G+K NL  ++   P    D     K  A   ++ F L  FHA++QER +Y PL
Sbjct: 2873 FSYENPPGVKANLLHTFIGIPATRMD-----KQPAERSRIYFLLAWFHAIIQERLRYIPL 2927

Query: 697  GWNIPYEFNLSDLNISMKQLQMFLNDYT 724
            GW   +EFN +DL  ++  +  +++ Y+
Sbjct: 2928 GWTKFFEFNDADLRGALDSIDYWVDLYS 2955



 Score = 78.6 bits (192), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 67/107 (62%), Gaps = 1/107 (0%)

Query: 52   IDIVTFLYIIQHISRLCRILQQPKGHAMLITIGGSGAAEVTKLATFMNEYVLFEIEILKT 111
            + +V F  ++ HI R+ R+ +QP+GHA+LI + G G + +++   +MN   ++ I++   
Sbjct: 1623 VPLVLFNEVLDHILRIDRVFRQPQGHALLIGVSGGGKSVLSRFVAWMNGLSIYTIKVNNN 1682

Query: 112  YGLTDWRDDLCRLMKKSGGKDAKPMTFLFSDTQIQNEVFVEHINMLL 158
            Y  +D+ DDL  L+K++G K+ K + F+F ++ +    F+E +N LL
Sbjct: 1683 YKSSDFDDDLRMLLKRAGCKEEK-ICFIFDESNVLESSFLERMNTLL 1728



 Score = 40.4 bits (93), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 53/120 (44%), Gaps = 9/120 (7%)

Query: 276  KEIDDARMMYIPVSKHSSVLFFCCAELSNIDPMYQYSLNWFINL-YVQSIEGSEKTDQLD 334
            +EI +   +Y P++   S ++F   ELS    +YQ+SL  F+++ Y          D+ D
Sbjct: 2514 QEISEVSALYNPMALSCSRVYFAMEELSQFH-LYQFSLRAFLDIFYNLLNNNPNLVDKKD 2572

Query: 335  --KRLKILMNHFTYSIYKNICRSLFEDHKLVFSFVLCT-----GQGEIAKSYIDEGLKKG 387
              +RL  L        +  + R+L  D KL F+  L          EI +S  D  LK G
Sbjct: 2573 PNERLVYLSKDIFSMTFNRVTRTLLNDDKLTFALQLTIISVKGTSNEIEESEWDFLLKGG 2632



 Score = 36.2 bits (82), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 13/33 (39%), Positives = 23/33 (69%)

Query: 224  IDIVTFLYIIQHISRLCRILQQPKGHAMLITIG 256
            + +V F  ++ HI R+ R+ +QP+GHA+LI + 
Sbjct: 1623 VPLVLFNEVLDHILRIDRVFRQPQGHALLIGVS 1655



 Score = 31.6 bits (70), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 50/217 (23%), Positives = 79/217 (36%), Gaps = 33/217 (15%)

Query: 1390 FNSDMNAAKPLTVSLGQG-----IQSYIQSLPLNNTPEIFGLHENADLTKNFNETRLVLG 1444
            FN D      + +S+ +G        +I++LP  +TP   GL ENA+     N+ R ++ 
Sbjct: 3006 FNPDFPLVPSIGLSVPEGTTRAHFMKWIEALPEISTPIWLGLPENAESLLLSNKARKMIN 3065

Query: 1445 NILLCAQQGSTPGAQPGDAE-----------------AKNVRIIDE---LLGKFPEQFDE 1484
            +  L   Q S    +                      AK    I E   LL K  +Q   
Sbjct: 3066 D--LQKMQSSEEDGEDDQVSGSSKKESSSSSSEDKGKAKLRATITEWTKLLPKPLKQLKR 3123

Query: 1485 EAAGRKYPILYNQSMNTVLKQELIRYNRLTVIIKKSLQEVRQAVKGLIVMSKELEEINTS 1544
                 K P+          ++E+    +L   I   L  + + + G I  +  L  + TS
Sbjct: 3124 TTQNIKDPLF------RCFEREISTGGKLVKKITNDLANLLELISGNIKSTNYLRSLTTS 3177

Query: 1545 IMFGKIPQAWASKSYPSLKPLGSYIVDLLARREGRGE 1581
            I  G +P+ W   S P    L  +I D   R +   E
Sbjct: 3178 ISKGIVPKEWKWYSVPETISLSVWISDFSKRMQQLSE 3214


>pdb|3VKG|A Chain A, X-Ray Structure Of An Mtbd Truncation Mutant Of Dynein Motor
            Domain
 pdb|3VKG|B Chain B, X-Ray Structure Of An Mtbd Truncation Mutant Of Dynein Motor
            Domain
          Length = 3245

 Score =  235 bits (599), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 174/700 (24%), Positives = 329/700 (47%), Gaps = 53/700 (7%)

Query: 781  AQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKLERAEKLIGGLGGEKTRWSEASA 840
            A +  +   +   ++E A   ++ ++++ +    K K++R+  L+  L  E+ RW + S 
Sbjct: 2035 ATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSE 2094

Query: 841  NLSKALVNCIGDILICAGIITYLGAFTVDFRNDLIEQWKSLSSQEQMPFTLSFSMITTLG 900
            N +  +   +GD+++ +  + Y+G F  +FR DL+ +W        + F    S+ + L 
Sbjct: 2095 NFNTQMSTVVGDVVLASAFLAYIGFFDQNFRTDLMRKWMIRLDSVGIKFKSDLSVPSFLS 2154

Query: 901  DAVKIRSWNINGLPVDNFSIENGIILFNSNKWPLLIDPQGQANKWLKN-VEKGNLSVVKL 959
               +  +W+ N LP D   IEN I+L   N++PL+IDP GQA ++L N      ++    
Sbjct: 2155 KPEERLNWHANSLPSDELCIENAIMLKRFNRYPLVIDPSGQAMEFLMNQYADKKITKTSF 2214

Query: 960  TDATLLRTLERAIRTGTAVLLENIQETIDSSLEPVLLKSYYKIQNQLIMTLNNKEIEYNI 1019
             D++ ++ LE A+R G  +L++++ E ID  L PVL K   K   ++++ L +++++++ 
Sbjct: 2215 LDSSFMKNLESALRFGCPLLVQDV-ENIDPVLNPVLNKEIRKKGGRILIRLGDQDVDFSP 2273

Query: 1020 KFRLYITTRLKNPHYIPEILTKITLINFMITPQGLQNQLLGIVVAKEKPDLETKKNELII 1079
             F +++ TR    H+ P++ +++T +NF +TP  LQ+Q L   +  E+PD   K+++L+ 
Sbjct: 2274 SFMIFLFTRDPTAHFTPDLCSRVTFVNFTVTPSSLQSQCLHEALKTERPDTHKKRSDLLK 2333

Query: 1080 ESANNKKILKETEDKILEVLSSSQGNILEDESAVQILTSSKVLSAEITAKQEISSRTEKE 1139
                 +  L+  E  +L  LS + GNIL+D+S +  L + K  + EI  K E +    +E
Sbjct: 2334 IQGEFQVKLRILEKSLLNALSQASGNILDDDSVISTLETLKKETTEIALKVEETETVMQE 2393

Query: 1140 IDDARMMYIPVSKHSSVLFFCCAELSNIDPMYQYSLNWFINL-YVQSIEGSEKTDQLD-- 1196
            I +   +Y P++   S ++F   ELS    +YQ+SL  F+++ Y          D+ D  
Sbjct: 2394 ISEVSALYNPMALSCSRVYFAMEELSQFH-LYQFSLRAFLDIFYNLLNNNPNLVDKKDPN 2452

Query: 1197 KRLKILMNHFTYSIYKNICRSLFEDHKLVFSFVLC-TGIQRSNETLDETLFKYFLTGSID 1255
            +RL  L        +  + R+L  D KL F+  L    ++ ++  ++E+ + + L G  +
Sbjct: 2453 ERLVYLSKDIFSMTFNRVTRTLLNDDKLTFALQLTIISVKGTSNEIEESEWDFLLKGGDN 2512

Query: 1256 LT--------MDS--PNPSPSWLSNKTWTDIIQISKLPQLGDLKASVKTKNSEWKSYYDS 1305
            LT        +DS        WL       I    ++P    L   ++  +S+WK ++  
Sbjct: 2513 LTSIKETIPQLDSLLSTTQQKWL-------ICLRQQVPSFSKLVDHIQQNSSDWKQFFGK 2565

Query: 1306 KT------PEKERVSYVQ--DKSDICVLNILKII-----RPDKVIQGIQIYVSKNLGEQY 1352
                    PE   V+  Q  ++    V N  KI+       D+V+Q    +V    GE +
Sbjct: 2566 DQVGEPIIPESWIVAQAQLSNQQSTIVSNFRKILLMKAFHSDRVLQYSHSFVCSVFGEDF 2625

Query: 1353 IVSPPFSLKQSYD-DSNCCTPLIFILSAGSDPMDLLLKFNSDMNAAKPLTVSLGQGIQSY 1411
            + +    +    + +    +PL+     G D            +    L + L +  +S+
Sbjct: 2626 LNTQELDMANIVEKEVKSSSPLLLCSVPGYDA----------SSKVDDLALQLHKQYKSF 2675

Query: 1412 IQSLPLNNTPEIFGLHENADLTKNFNETRLVLGNILLCAQ 1451
                    +PE F L E +      + T ++L NI L  Q
Sbjct: 2676 AIG-----SPEGFELAEKSIYAAAKSGTWVLLKNIHLAPQ 2710



 Score = 97.1 bits (240), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 56/174 (32%), Positives = 91/174 (52%), Gaps = 10/174 (5%)

Query: 360  HKLVFSFVLCTGQG-EIAKSYIDEGLKKGLWIVLQNCHVAKSWMKELERICAEVIVPANT 418
            HK   SF + + +G E+A+  I    K G W++L+N H+A  W+ +LE+    +    + 
Sbjct: 2669 HKQYKSFAIGSPEGFELAEKSIYAAAKSGTWVLLKNIHLAPQWLVQLEKKLHSL----SP 2724

Query: 419  HQEFRLWLTSYPSTTFPVSVLENGIKMIIEPPKGIKNNLLRSYTNDPINSDDFYNDSKNV 478
            H  FRL++TS      P ++L        E P G+K NLL ++   P    D     K  
Sbjct: 2725 HPSFRLFMTSEIHPALPANLLRMSNVFSYENPPGVKANLLHTFIGIPATRMD-----KQP 2779

Query: 479  AAWHKLLFSLCLFHAVVQERKQYGPLGWNIPYEFNLSDLNISMKQLQMFLNDYT 532
            A   ++ F L  FHA++QER +Y PLGW   +EFN +DL  ++  +  +++ Y+
Sbjct: 2780 AERSRIYFLLAWFHAIIQERLRYIPLGWTKFFEFNDADLRGALDSIDYWVDLYS 2833



 Score = 87.0 bits (214), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 47/148 (31%), Positives = 77/148 (52%), Gaps = 9/148 (6%)

Query: 577  KKGLWIVLQNCHVAKSWMKELERICAEVIVPANTHQEFRLWLTSYPSTTFPVSVLENGIK 636
            K G W++L+N H+A  W+ +LE+    +    + H  FRL++TS      P ++L     
Sbjct: 2695 KSGTWVLLKNIHLAPQWLVQLEKKLHSL----SPHPSFRLFMTSEIHPALPANLLRMSNV 2750

Query: 637  MIIEPPKGIKNNLFRSYTNDPINSDDFYNDSKNVAAWHKLLFSLCLFHAVVQERKQYGPL 696
               E P G+K NL  ++   P    D     K  A   ++ F L  FHA++QER +Y PL
Sbjct: 2751 FSYENPPGVKANLLHTFIGIPATRMD-----KQPAERSRIYFLLAWFHAIIQERLRYIPL 2805

Query: 697  GWNIPYEFNLSDLNISMKQLQMFLNDYT 724
            GW   +EFN +DL  ++  +  +++ Y+
Sbjct: 2806 GWTKFFEFNDADLRGALDSIDYWVDLYS 2833



 Score = 78.6 bits (192), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 67/107 (62%), Gaps = 1/107 (0%)

Query: 52   IDIVTFLYIIQHISRLCRILQQPKGHAMLITIGGSGAAEVTKLATFMNEYVLFEIEILKT 111
            + +V F  ++ HI R+ R+ +QP+GHA+LI + G G + +++   +MN   ++ I++   
Sbjct: 1623 VPLVLFNEVLDHILRIDRVFRQPQGHALLIGVSGGGKSVLSRFVAWMNGLSIYTIKVNNN 1682

Query: 112  YGLTDWRDDLCRLMKKSGGKDAKPMTFLFSDTQIQNEVFVEHINMLL 158
            Y  +D+ DDL  L+K++G K+ K + F+F ++ +    F+E +N LL
Sbjct: 1683 YKSSDFDDDLRMLLKRAGCKEEK-ICFIFDESNVLESSFLERMNTLL 1728



 Score = 40.4 bits (93), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 53/120 (44%), Gaps = 9/120 (7%)

Query: 276  KEIDDARMMYIPVSKHSSVLFFCCAELSNIDPMYQYSLNWFINL-YVQSIEGSEKTDQLD 334
            +EI +   +Y P++   S ++F   ELS    +YQ+SL  F+++ Y          D+ D
Sbjct: 2392 QEISEVSALYNPMALSCSRVYFAMEELSQFH-LYQFSLRAFLDIFYNLLNNNPNLVDKKD 2450

Query: 335  --KRLKILMNHFTYSIYKNICRSLFEDHKLVFSFVLCT-----GQGEIAKSYIDEGLKKG 387
              +RL  L        +  + R+L  D KL F+  L          EI +S  D  LK G
Sbjct: 2451 PNERLVYLSKDIFSMTFNRVTRTLLNDDKLTFALQLTIISVKGTSNEIEESEWDFLLKGG 2510



 Score = 36.2 bits (82), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 13/33 (39%), Positives = 23/33 (69%)

Query: 224  IDIVTFLYIIQHISRLCRILQQPKGHAMLITIG 256
            + +V F  ++ HI R+ R+ +QP+GHA+LI + 
Sbjct: 1623 VPLVLFNEVLDHILRIDRVFRQPQGHALLIGVS 1655



 Score = 31.6 bits (70), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 50/217 (23%), Positives = 79/217 (36%), Gaps = 33/217 (15%)

Query: 1390 FNSDMNAAKPLTVSLGQG-----IQSYIQSLPLNNTPEIFGLHENADLTKNFNETRLVLG 1444
            FN D      + +S+ +G        +I++LP  +TP   GL ENA+     N+ R ++ 
Sbjct: 2884 FNPDFPLVPSIGLSVPEGTTRAHFMKWIEALPEISTPIWLGLPENAESLLLSNKARKMIN 2943

Query: 1445 NILLCAQQGSTPGAQPGDAE-----------------AKNVRIIDE---LLGKFPEQFDE 1484
            +  L   Q S    +                      AK    I E   LL K  +Q   
Sbjct: 2944 D--LQKMQSSEEDGEDDQVSGSSKKESSSSSSEDKGKAKLRATITEWTKLLPKPLKQLKR 3001

Query: 1485 EAAGRKYPILYNQSMNTVLKQELIRYNRLTVIIKKSLQEVRQAVKGLIVMSKELEEINTS 1544
                 K P+          ++E+    +L   I   L  + + + G I  +  L  + TS
Sbjct: 3002 TTQNIKDPLF------RCFEREISTGGKLVKKITNDLANLLELISGNIKSTNYLRSLTTS 3055

Query: 1545 IMFGKIPQAWASKSYPSLKPLGSYIVDLLARREGRGE 1581
            I  G +P+ W   S P    L  +I D   R +   E
Sbjct: 3056 ISKGIVPKEWKWYSVPETISLSVWISDFSKRMQQLSE 3092


>pdb|3QMZ|A Chain A, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
            Motor Domain
 pdb|3QMZ|B Chain B, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
            Motor Domain
          Length = 2486

 Score =  108 bits (271), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 106/483 (21%), Positives = 218/483 (45%), Gaps = 25/483 (5%)

Query: 751  VIKIVGPKKAKLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQ 810
            ++K+V  K   L E +    V +EKLN       +VL K+  L   L +   ++KE    
Sbjct: 1636 LVKLVTAKYQDLQENQRFVNVGLEKLNE------SVL-KVNELNKTLPKAPPEEKE---- 1684

Query: 811  IELCKQKLERAEKLIGGLGGEKTRWSEASANLSKALVNCIGDILICAGIITYLGAFTVDF 870
                      +  L+  L  EK RW   +   SK     IG+ +I +   TY G      
Sbjct: 1685 ---------ASISLVKSLTFEKERWLNTTKQFSKTSQELIGNCIISSIYETYFGHLNERE 1735

Query: 871  RNDLIEQWKSLSSQEQMPFTLSFSMITTLGDAVKIRSWNINGLPVDNFSIENGIILFNS- 929
            R D++   K L  +  + + +++  I  L    +   W   GL  +++ +EN  I+ NS 
Sbjct: 1736 RGDMLVILKRLLGKFAVKYDVNYRFIDYLVTLDEKMKWLECGLDKNDYFLENMSIVMNSQ 1795

Query: 930  NKWPLLIDPQGQANKWLKNVEKGNLSVVKLTDATLLRTLERAIRTGTAVLLENIQETIDS 989
            +  P L+DP       + N       ++   +   ++ LE A+R G+ V++++  E  D 
Sbjct: 1796 DAVPFLLDPSSHMITVISNYYGNKTVLLSFLEEGFVKRLENAVRFGSVVIIQD-GEFFDP 1854

Query: 990  SLEPVLLKSYYKIQNQLIMTLNNKEIEYNIKFRLYITTRLKNPHYIPEIL-TKITLINFM 1048
             +  ++ + +    N++ + + + E++ +  F+L+I +       IP  L +++ L++F+
Sbjct: 1855 IISRLISREFNHAGNRVTVEIGDHEVDVSGDFKLFIHS-CDPSGDIPIFLRSRVRLVHFV 1913

Query: 1049 ITPQGLQNQLLGIVVAKEKPDLETKKNELIIESANNKKILKETEDKILEVLSSSQGNILE 1108
               + ++ ++  I + +E  +++ K+ +LI  +   +  LK  E ++LE L++SQGN+LE
Sbjct: 1914 TNKESIETRIFDITLTEENAEMQRKREDLIKLNTEYRLKLKNLEKRLLEELNNSQGNMLE 1973

Query: 1109 DESAVQILTSSKVLSAEITAKQEISSRTEKEIDDARMMYIPVSKHSSVLFFCCAELSNID 1168
            ++  +  L + K  +  I  K   S     + D+    Y  + KHS  +F    +     
Sbjct: 1974 NDELMVTLNNLKKEAMNIEKKLSESEEFFPQFDNLVEEYSIIGKHSVKIFSMLEKFGQFH 2033

Query: 1169 PMYQYSLNWFINLYVQS-IEGSEKTDQLDKRLKILMNHFTYSIYKNICRSLFEDHKLVFS 1227
              Y  S+  F++ + +  I+ S +T     R+  ++      +Y     +L +  K++ +
Sbjct: 2034 WFYGISIGQFLSCFKRVFIKKSRETRAARTRVDEILWLLYQEVYCQFSTALDKKFKMIMA 2093

Query: 1228 FVL 1230
              +
Sbjct: 2094 MTM 2096



 Score = 54.7 bits (130), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 76/169 (44%), Gaps = 14/169 (8%)

Query: 371  GQGEIAKSYIDEGLKKGLWIVLQNCHVAKSWMKELERICAEVIVPANTHQEFRLWLTSY- 429
             Q EI+KS I+ G     WI+LQN  ++ SW+K       E    A  H++F++++T + 
Sbjct: 2219 AQEEISKSKIEGG-----WILLQNIQMSLSWVKTYLHKHVEETKAAEEHEKFKMFMTCHL 2273

Query: 430  PSTTFPVSVLENGIKMIIEPPKGIKNNLLRSYTNDPINSDDFYNDSKNVAAWHKLLFSLC 489
                 P  +L+   +++ E   GI + +      D   S  F      V + +   F L 
Sbjct: 2274 TGDKLPAPLLQRTDRVVYEDIPGILDTV-----KDLWGSQFFTGKISGVWSVY-CTFLLS 2327

Query: 490  LFHAVVQERKQYGPLGWNIPYEFNLSDLNISMKQLQMFL--NDYTTIPF 536
             FHA++  R +  P G++  Y FN  D   +   L+  L  N    IP+
Sbjct: 2328 WFHALITARTRLVPHGFSKKYYFNDCDFQFASVYLENVLATNSTNNIPW 2376



 Score = 50.4 bits (119), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 69/154 (44%), Gaps = 9/154 (5%)

Query: 578  KGLWIVLQNCHVAKSWMKELERICAEVIVPANTHQEFRLWLTSY-PSTTFPVSVLENGIK 636
            +G WI+LQN  ++ SW+K       E    A  H++F++++T +      P  +L+   +
Sbjct: 2229 EGGWILLQNIQMSLSWVKTYLHKHVEETKAAEEHEKFKMFMTCHLTGDKLPAPLLQRTDR 2288

Query: 637  MIIEPPKGIKNNLFRSYTNDPINSDDFYNDSKNVAAWHKLLFSLCLFHAVVQERKQYGPL 696
            ++ E   GI + +      D   S  F      V + +   F L  FHA++  R +  P 
Sbjct: 2289 VVYEDIPGILDTV-----KDLWGSQFFTGKISGVWSVY-CTFLLSWFHALITARTRLVPH 2342

Query: 697  GWNIPYEFNLSDLNISMKQLQMFL--NDYTTIPF 728
            G++  Y FN  D   +   L+  L  N    IP+
Sbjct: 2343 GFSKKYYFNDCDFQFASVYLENVLATNSTNNIPW 2376



 Score = 43.5 bits (101), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/102 (25%), Positives = 52/102 (50%), Gaps = 1/102 (0%)

Query: 60   IIQHISRLCRILQQPKGHAMLITIGGSGAAEVTKLATFMNEYVLFEIEILKTYGLTDWRD 119
            ++ HI R+ R L+Q +GH MLI    +G   +T+   ++N   + + +I +   L+D+  
Sbjct: 1375 MVDHILRIDRALKQVQGHMMLIGASRTGKTILTRFVAWLNGLKIVQPKIHRHSNLSDFDM 1434

Query: 120  DLCRLMKKSGGKDAKPMTFLFSDTQIQNEVFVEHINMLLNTA 161
             L + +     K+++    +  ++ I    F+E +N LL  A
Sbjct: 1435 ILKKAISDCSLKESRT-CLIIDESNILETAFLERMNTLLANA 1475


>pdb|4AI6|A Chain A, Dynein Motor Domain - Adp Complex
 pdb|4AI6|B Chain B, Dynein Motor Domain - Adp Complex
 pdb|4AKG|A Chain A, Dynein Motor Domain - Atp Complex
 pdb|4AKG|B Chain B, Dynein Motor Domain - Atp Complex
 pdb|4AKH|A Chain A, Dynein Motor Domain - Amppnp Complex
 pdb|4AKH|B Chain B, Dynein Motor Domain - Amppnp Complex
 pdb|4AKI|A Chain A, Dynein Motor Domain - Luac Derivative
 pdb|4AKI|B Chain B, Dynein Motor Domain - Luac Derivative
          Length = 2695

 Score =  107 bits (268), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 91/410 (22%), Positives = 190/410 (46%), Gaps = 5/410 (1%)

Query: 824  LIGGLGGEKTRWSEASANLSKALVNCIGDILICAGIITYLGAFTVDFRNDLIEQWKSLSS 883
            L+  L  EK RW   +   SK     IG+ +I +   TY G      R D++   K L  
Sbjct: 1898 LVKSLTFEKERWLNTTKQFSKTSQELIGNCIISSIYETYFGHLNERERADMLVILKRLLG 1957

Query: 884  QEQMPFTLSFSMITTLGDAVKIRSWNINGLPVDNFSIENGIILFNS-NKWPLLIDPQGQA 942
            +  + + +++  I  L    +   W   GL  +++ +EN  I+ NS +  P L+DP    
Sbjct: 1958 KFAVKYDVNYRFIDYLVTLDEKMKWLECGLDKNDYFLENMSIVMNSQDAVPFLLDPSSHM 2017

Query: 943  NKWLKNVEKGNLSVVKLTDATLLRTLERAIRTGTAVLLENIQETIDSSLEPVLLKSYYKI 1002
               + N       ++   +   ++ LE AIR G+ V++++  E  D  +  ++ + +   
Sbjct: 2018 ITVISNYYGNKTVLLSFLEEGFVKRLENAIRFGSVVIIQD-GEFFDPIISRLISREFNHA 2076

Query: 1003 QNQLIMTLNNKEIEYNIKFRLYITTRLKNPHYIPEIL-TKITLINFMITPQGLQNQLLGI 1061
             N++ + + + E++ +  F+L+I +       IP  L +++ L++F+   + ++ ++  I
Sbjct: 2077 GNRVTVEIGDHEVDVSGDFKLFIHS-CDPSGDIPIFLRSRVRLVHFVTNKESIETRIFDI 2135

Query: 1062 VVAKEKPDLETKKNELIIESANNKKILKETEDKILEVLSSSQGNILEDESAVQILTSSKV 1121
             + +E  +++ K+ +LI  +   K  LK  E ++LE L++SQGN+LE++  +  L + K 
Sbjct: 2136 TLTEENAEMQRKREDLIKLNTEYKLKLKNLEKRLLEELNNSQGNMLENDELMVTLNNLKK 2195

Query: 1122 LSAEITAKQEISSRTEKEIDDARMMYIPVSKHSSVLFFCCAELSNIDPMYQYSLNWFINL 1181
             +  I  K   S     + D+    Y  + KHS  +F    +       Y  S+  F++ 
Sbjct: 2196 EAMNIEKKLSESEEFFPQFDNLVEEYSIIGKHSVKIFSMLEKFGQFHWFYGISIGQFLSC 2255

Query: 1182 YVQS-IEGSEKTDQLDKRLKILMNHFTYSIYKNICRSLFEDHKLVFSFVL 1230
            + +  I+ S +T     R+  ++      +Y     +L +  K++ +  +
Sbjct: 2256 FKRVFIKKSRETRAARTRVDEILWLLYQEVYCQFSTALDKKFKMIMAMTM 2305



 Score = 54.3 bits (129), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 75/169 (44%), Gaps = 14/169 (8%)

Query: 371  GQGEIAKSYIDEGLKKGLWIVLQNCHVAKSWMKELERICAEVIVPANTHQEFRLWLTSY- 429
             Q EI+KS I+ G     WI+LQN  ++ SW+K       E    A  H++F++++T + 
Sbjct: 2428 AQEEISKSKIEGG-----WILLQNIQMSLSWVKTYLHKHVEETKAAEEHEKFKMFMTCHL 2482

Query: 430  PSTTFPVSVLENGIKMIIEPPKGIKNNLLRSYTNDPINSDDFYNDSKNVAAWHKLLFSLC 489
                 P  +L+   + + E   GI + +      D   S  F      V + +   F L 
Sbjct: 2483 TGDKLPAPLLQRTDRFVYEDIPGILDTV-----KDLWGSQFFTGKISGVWSVY-CTFLLS 2536

Query: 490  LFHAVVQERKQYGPLGWNIPYEFNLSDLNISMKQLQMFL--NDYTTIPF 536
             FHA++  R +  P G++  Y FN  D   +   L+  L  N    IP+
Sbjct: 2537 WFHALITARTRLVPHGFSKKYYFNDCDFQFASVYLENVLATNSTNNIPW 2585



 Score = 50.1 bits (118), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 68/154 (44%), Gaps = 9/154 (5%)

Query: 578  KGLWIVLQNCHVAKSWMKELERICAEVIVPANTHQEFRLWLTSY-PSTTFPVSVLENGIK 636
            +G WI+LQN  ++ SW+K       E    A  H++F++++T +      P  +L+   +
Sbjct: 2438 EGGWILLQNIQMSLSWVKTYLHKHVEETKAAEEHEKFKMFMTCHLTGDKLPAPLLQRTDR 2497

Query: 637  MIIEPPKGIKNNLFRSYTNDPINSDDFYNDSKNVAAWHKLLFSLCLFHAVVQERKQYGPL 696
             + E   GI + +      D   S  F      V + +   F L  FHA++  R +  P 
Sbjct: 2498 FVYEDIPGILDTV-----KDLWGSQFFTGKISGVWSVY-CTFLLSWFHALITARTRLVPH 2551

Query: 697  GWNIPYEFNLSDLNISMKQLQMFL--NDYTTIPF 728
            G++  Y FN  D   +   L+  L  N    IP+
Sbjct: 2552 GFSKKYYFNDCDFQFASVYLENVLATNSTNNIPW 2585



 Score = 43.5 bits (101), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/102 (25%), Positives = 52/102 (50%), Gaps = 1/102 (0%)

Query: 60   IIQHISRLCRILQQPKGHAMLITIGGSGAAEVTKLATFMNEYVLFEIEILKTYGLTDWRD 119
            ++ HI R+ R L+Q +GH MLI    +G   +T+   ++N   + + +I +   L+D+  
Sbjct: 1594 MVDHILRIDRALKQVQGHMMLIGASRTGKTILTRFVAWLNGLKIVQPKIHRHSNLSDFDM 1653

Query: 120  DLCRLMKKSGGKDAKPMTFLFSDTQIQNEVFVEHINMLLNTA 161
             L + +     K+++    +  ++ I    F+E +N LL  A
Sbjct: 1654 ILKKAISDCSLKESRT-CLIIDESNILETAFLERMNTLLANA 1694


>pdb|1C1G|A Chain A, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
           In The Spermine-Induced Crystal Form
 pdb|1C1G|B Chain B, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
           In The Spermine-Induced Crystal Form
 pdb|1C1G|C Chain C, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
           In The Spermine-Induced Crystal Form
 pdb|1C1G|D Chain D, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
           In The Spermine-Induced Crystal Form
          Length = 284

 Score = 33.9 bits (76), Expect = 0.71,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 36/65 (55%)

Query: 764 EAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKLERAEK 823
           EAEAD     ++      +L ++  KL+A  DEL + S+  K+ ++++EL ++K   AE 
Sbjct: 24  EAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKDAQEKLELAEKKATDAEA 83

Query: 824 LIGGL 828
            +  L
Sbjct: 84  DVASL 88


>pdb|2RR7|A Chain A, Microtubule Binding Domain Of Dynein-C
          Length = 155

 Score = 32.7 bits (73), Expect = 1.8,   Method: Composition-based stats.
 Identities = 15/24 (62%), Positives = 19/24 (79%)

Query: 742 VLAMEVYDRVIKIVGPKKAKLAEA 765
           V+A+E YD+VIK V PK+ KL EA
Sbjct: 132 VIALEKYDKVIKEVEPKRQKLREA 155


>pdb|2TMA|A Chain A, Tropomyosin Crystal Structure And Muscle Regulation.
           Appendix. Construction Of An Atomic Model For
           Tropomyosin And Implications For Interactions With Actin
 pdb|2TMA|B Chain B, Tropomyosin Crystal Structure And Muscle Regulation.
           Appendix. Construction Of An Atomic Model For
           Tropomyosin And Implications For Interactions With Actin
          Length = 284

 Score = 31.6 bits (70), Expect = 4.3,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 35/65 (53%)

Query: 764 EAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKLERAEK 823
           +AEAD     ++      +L ++  KL+   DEL + S+  K+ ++++EL ++K   AE 
Sbjct: 24  QAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKYSEALKDAQEKLELAEKKATDAEA 83

Query: 824 LIGGL 828
            +  L
Sbjct: 84  DVASL 88


>pdb|2W49|A Chain A, Isometrically Contracting Insect Asynchronous Flight
           Muscle
 pdb|2W49|B Chain B, Isometrically Contracting Insect Asynchronous Flight
           Muscle
 pdb|2W49|C Chain C, Isometrically Contracting Insect Asynchronous Flight
           Muscle
 pdb|2W49|T Chain T, Isometrically Contracting Insect Asynchronous Flight
           Muscle
 pdb|2W49|U Chain U, Isometrically Contracting Insect Asynchronous Flight
           Muscle
 pdb|2W49|V Chain V, Isometrically Contracting Insect Asynchronous Flight
           Muscle
 pdb|2W49|W Chain W, Isometrically Contracting Insect Asynchronous Flight
           Muscle
 pdb|2W49|X Chain X, Isometrically Contracting Insect Asynchronous Flight
           Muscle
 pdb|2W4U|A Chain A, Isometrically Contracting Insect Asynchronous Flight
           Muscle Quick Frozen After A Length Step
 pdb|2W4U|B Chain B, Isometrically Contracting Insect Asynchronous Flight
           Muscle Quick Frozen After A Length Step
 pdb|2W4U|C Chain C, Isometrically Contracting Insect Asynchronous Flight
           Muscle Quick Frozen After A Length Step
 pdb|2W4U|T Chain T, Isometrically Contracting Insect Asynchronous Flight
           Muscle Quick Frozen After A Length Step
 pdb|2W4U|U Chain U, Isometrically Contracting Insect Asynchronous Flight
           Muscle Quick Frozen After A Length Step
 pdb|2W4U|V Chain V, Isometrically Contracting Insect Asynchronous Flight
           Muscle Quick Frozen After A Length Step
 pdb|2W4U|W Chain W, Isometrically Contracting Insect Asynchronous Flight
           Muscle Quick Frozen After A Length Step
 pdb|2W4U|X Chain X, Isometrically Contracting Insect Asynchronous Flight
           Muscle Quick Frozen After A Length Step
          Length = 277

 Score = 31.2 bits (69), Expect = 4.5,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 35/65 (53%)

Query: 764 EAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKLERAEK 823
           +AEAD     ++      +L ++  KL+   DEL + S+  K+ ++++EL ++K   AE 
Sbjct: 17  QAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKYSEALKDAQEKLELAEKKATDAEA 76

Query: 824 LIGGL 828
            +  L
Sbjct: 77  DVASL 81


>pdb|2I7Q|A Chain A, Crystal Structure Of Human Choline Kinase A
          Length = 402

 Score = 30.4 bits (67), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 25/105 (23%), Positives = 49/105 (46%), Gaps = 9/105 (8%)

Query: 913  LPVDNFSIENGIILFNSNKWPLLIDPQ---GQANKWLKNVEKGNLSVVKLTDATLLRTLE 969
            LP  +  I   +  F+  K P   +P+   G   K+LK V +     +K T+ + ++ L 
Sbjct: 166  LPDISAEIAEKMATFHGMKMPFNKEPKWLFGTMEKYLKEVLR-----IKFTEESRIKKLH 220

Query: 970  RAIRTGTAVLLENIQETIDSSLEPVLLKSYYKIQNQLIMTLNNKE 1014
            + +     + LEN++  ++S+  PV+   +   Q   I+ L  +E
Sbjct: 221  KLLSYNLPLELENLRSLLESTPSPVVF-CHNDCQEGNILLLEGRE 264


>pdb|3F2R|A Chain A, Crystal Structure Of Human Choline Kinase Alpha In Complex
            With Hemicholinium-3
 pdb|3F2R|B Chain B, Crystal Structure Of Human Choline Kinase Alpha In Complex
            With Hemicholinium-3
 pdb|3G15|A Chain A, Crystal Structure Of Human Choline Kinase Alpha In Complex
            With Hemicholinium-3 And Adp
 pdb|3G15|B Chain B, Crystal Structure Of Human Choline Kinase Alpha In Complex
            With Hemicholinium-3 And Adp
          Length = 401

 Score = 30.4 bits (67), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 25/105 (23%), Positives = 49/105 (46%), Gaps = 9/105 (8%)

Query: 913  LPVDNFSIENGIILFNSNKWPLLIDPQ---GQANKWLKNVEKGNLSVVKLTDATLLRTLE 969
            LP  +  I   +  F+  K P   +P+   G   K+LK V +     +K T+ + ++ L 
Sbjct: 165  LPDISAEIAEKMATFHGMKMPFNKEPKWLFGTMEKYLKEVLR-----IKFTEESRIKKLH 219

Query: 970  RAIRTGTAVLLENIQETIDSSLEPVLLKSYYKIQNQLIMTLNNKE 1014
            + +     + LEN++  ++S+  PV+   +   Q   I+ L  +E
Sbjct: 220  KLLSYNLPLELENLRSLLESTPSPVVF-CHNDCQEGNILLLEGRE 263


>pdb|3ZM9|A Chain A, The Mechanism Of Allosteric Coupling In Choline Kinase A1
            Revealed By A Rationally Designed Inhibitor
 pdb|3ZM9|B Chain B, The Mechanism Of Allosteric Coupling In Choline Kinase A1
            Revealed By A Rationally Designed Inhibitor
          Length = 383

 Score = 30.4 bits (67), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 25/105 (23%), Positives = 49/105 (46%), Gaps = 9/105 (8%)

Query: 913  LPVDNFSIENGIILFNSNKWPLLIDPQ---GQANKWLKNVEKGNLSVVKLTDATLLRTLE 969
            LP  +  I   +  F+  K P   +P+   G   K+LK V +     +K T+ + ++ L 
Sbjct: 147  LPDISAEIAEKMATFHGMKMPFNKEPKWLFGTMEKYLKEVLR-----IKFTEESRIKKLH 201

Query: 970  RAIRTGTAVLLENIQETIDSSLEPVLLKSYYKIQNQLIMTLNNKE 1014
            + +     + LEN++  ++S+  PV+   +   Q   I+ L  +E
Sbjct: 202  KLLSYNLPLELENLRSLLESTPSPVVF-CHNDCQEGNILLLEGRE 245


>pdb|3RIU|A Chain A, Crystal Structure Of Drosophila Hexameric C3po Formed By
           Truncated Translin And Trax
 pdb|3RIU|B Chain B, Crystal Structure Of Drosophila Hexameric C3po Formed By
           Truncated Translin And Trax
          Length = 218

 Score = 30.4 bits (67), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 7/74 (9%)

Query: 778 SKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKLERAEKLIGGLGGEKTRWSE 837
           SK AQ+     KLQ +  +L+Q S        Q+ELC QK ++  +L+    G+  R+S+
Sbjct: 39  SKEAQI-----KLQIIHSDLSQISAACGLARKQVELCAQKYQKLAELVP--AGQYYRYSD 91

Query: 838 ASANLSKALVNCIG 851
               +++ L+  I 
Sbjct: 92  HWTFITQRLIFIIA 105


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.135    0.395 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,391,526
Number of Sequences: 62578
Number of extensions: 1930763
Number of successful extensions: 5492
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 5413
Number of HSP's gapped (non-prelim): 72
length of query: 1650
length of database: 14,973,337
effective HSP length: 112
effective length of query: 1538
effective length of database: 7,964,601
effective search space: 12249556338
effective search space used: 12249556338
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)