Query psy4724
Match_columns 1650
No_of_seqs 549 out of 2546
Neff 8.2
Searched_HMMs 46136
Date Sat Aug 17 00:13:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4724.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4724hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3595|consensus 100.0 5E-114 1E-118 1178.4 72.2 974 21-1225 412-1395(1395)
2 COG5245 DYN1 Dynein, heavy cha 100.0 2.4E-57 5.2E-62 554.5 51.3 930 28-1188 1791-2738(3164)
3 PF12781 AAA_9: ATP-binding dy 100.0 9.1E-60 2E-64 523.6 16.5 228 898-1127 1-228 (228)
4 PF03028 Dynein_heavy: Dynein 100.0 3.6E-50 7.7E-55 528.4 20.3 323 1259-1581 3-554 (707)
5 PF12780 AAA_8: P-loop contain 100.0 6E-50 1.3E-54 455.3 8.0 206 43-344 1-209 (268)
6 PF12777 MT: Microtubule-bindi 100.0 1.1E-38 2.4E-43 380.1 13.5 333 509-882 2-344 (344)
7 PF03028 Dynein_heavy: Dynein 99.9 6.5E-24 1.4E-28 280.0 5.3 185 559-748 149-337 (707)
8 KOG3595|consensus 99.1 3.9E-11 8.5E-16 166.9 6.8 248 87-362 1135-1394(1395)
9 COG5245 DYN1 Dynein, heavy cha 97.8 7.5E-05 1.6E-09 96.9 10.2 167 566-739 2904-3074(3164)
10 KOG0250|consensus 97.5 0.28 6.1E-06 64.7 35.6 188 954-1163 576-787 (1074)
11 PF00004 AAA: ATPase family as 95.0 0.077 1.7E-06 54.5 8.1 72 78-150 1-74 (132)
12 PRK14956 DNA polymerase III su 94.6 0.12 2.6E-06 64.2 9.5 91 67-162 30-146 (484)
13 cd00009 AAA The AAA+ (ATPases 94.1 0.27 6E-06 51.0 9.9 86 72-158 16-108 (151)
14 PRK14949 DNA polymerase III su 93.9 0.23 4.9E-06 65.6 10.1 101 57-162 15-144 (944)
15 PRK12323 DNA polymerase III su 93.9 0.23 5E-06 63.4 9.9 90 68-162 29-149 (700)
16 PF07728 AAA_5: AAA domain (dy 93.7 0.05 1.1E-06 56.8 3.2 83 77-162 1-93 (139)
17 PRK14951 DNA polymerase III su 93.6 0.23 5.1E-06 64.1 9.5 91 67-162 28-149 (618)
18 PRK14961 DNA polymerase III su 92.5 0.49 1.1E-05 58.1 9.9 99 54-162 18-144 (363)
19 TIGR03015 pepcterm_ATPase puta 92.5 0.67 1.4E-05 54.3 10.7 90 69-159 37-148 (269)
20 PRK07003 DNA polymerase III su 92.0 0.59 1.3E-05 60.7 9.9 90 68-162 29-144 (830)
21 PRK07994 DNA polymerase III su 91.8 0.61 1.3E-05 60.6 9.8 91 67-162 28-144 (647)
22 TIGR00635 ruvB Holliday juncti 91.6 0.68 1.5E-05 55.4 9.6 79 74-160 29-107 (305)
23 PF12718 Tropomyosin_1: Tropom 91.5 4.2 9E-05 42.6 13.9 92 757-848 46-140 (143)
24 TIGR02640 gas_vesic_GvpN gas v 91.2 0.76 1.6E-05 53.7 9.0 95 64-162 11-133 (262)
25 PRK04195 replication factor C 91.1 0.94 2E-05 57.9 10.6 83 74-160 38-128 (482)
26 PRK10865 protein disaggregatio 91.0 0.6 1.3E-05 63.5 9.1 93 49-144 174-281 (857)
27 PRK14960 DNA polymerase III su 91.0 0.87 1.9E-05 58.5 9.8 92 66-162 26-143 (702)
28 PRK10884 SH3 domain-containing 91.0 2.8 6.1E-05 46.6 12.6 83 740-827 78-164 (206)
29 PRK13342 recombination factor 90.7 0.8 1.7E-05 57.3 9.2 88 58-148 18-106 (413)
30 PRK11034 clpA ATP-dependent Cl 90.7 0.71 1.5E-05 61.5 9.1 107 54-162 460-585 (758)
31 KOG1003|consensus 90.7 5.3 0.00011 42.8 13.5 106 744-849 79-191 (205)
32 PRK11331 5-methylcytosine-spec 90.7 1.1 2.4E-05 55.4 9.9 90 28-121 133-245 (459)
33 PF00931 NB-ARC: NB-ARC domain 90.6 0.56 1.2E-05 55.5 7.4 93 63-157 4-122 (287)
34 PRK11637 AmiB activator; Provi 90.6 2.5 5.4E-05 53.2 13.5 66 758-823 52-117 (428)
35 COG1579 Zn-ribbon protein, pos 90.5 3.7 8.1E-05 46.3 13.1 84 767-850 31-116 (239)
36 PRK07764 DNA polymerase III su 90.5 0.99 2.1E-05 60.7 10.2 91 67-162 27-145 (824)
37 KOG1969|consensus 90.4 0.9 2E-05 57.7 8.9 87 74-160 325-413 (877)
38 PRK14952 DNA polymerase III su 90.2 1.3 2.9E-05 57.1 10.7 91 67-162 25-143 (584)
39 PF00261 Tropomyosin: Tropomyo 90.1 5.4 0.00012 45.8 14.5 106 744-849 111-230 (237)
40 PRK14962 DNA polymerase III su 90.1 1 2.2E-05 56.9 9.4 92 64-160 23-140 (472)
41 TIGR02639 ClpA ATP-dependent C 89.9 1.1 2.4E-05 60.2 10.1 104 57-162 459-581 (731)
42 COG2256 MGS1 ATPase related to 89.9 0.88 1.9E-05 54.3 7.8 87 66-155 38-129 (436)
43 PRK07940 DNA polymerase III su 89.8 1.2 2.7E-05 54.8 9.5 82 76-162 36-142 (394)
44 PF13401 AAA_22: AAA domain; P 89.8 0.46 1E-05 48.7 5.1 87 73-160 2-114 (131)
45 TIGR03345 VI_ClpV1 type VI sec 89.8 1.1 2.4E-05 60.9 9.9 92 49-143 183-289 (852)
46 TIGR01241 FtsH_fam ATP-depende 89.8 1.4 3E-05 56.6 10.5 102 21-144 52-157 (495)
47 PHA02544 44 clamp loader, smal 89.6 1.7 3.6E-05 52.4 10.5 89 54-146 23-112 (316)
48 PRK14957 DNA polymerase III su 89.5 1.6 3.5E-05 55.8 10.5 91 67-162 28-144 (546)
49 PRK07133 DNA polymerase III su 89.4 1.5 3.3E-05 57.4 10.2 101 54-162 20-143 (725)
50 COG4942 Membrane-bound metallo 89.1 6.5 0.00014 47.8 14.4 115 760-874 38-163 (420)
51 TIGR01650 PD_CobS cobaltochela 88.9 1.1 2.4E-05 53.1 7.9 89 65-160 55-160 (327)
52 KOG0743|consensus 88.9 0.64 1.4E-05 56.4 5.9 54 75-137 236-290 (457)
53 CHL00176 ftsH cell division pr 88.8 1.4 3.1E-05 57.6 9.5 88 54-145 185-286 (638)
54 TIGR02639 ClpA ATP-dependent C 88.7 0.92 2E-05 61.0 8.0 86 53-143 183-283 (731)
55 PLN00020 ribulose bisphosphate 88.6 1.5 3.2E-05 52.5 8.5 86 55-143 126-221 (413)
56 PRK14969 DNA polymerase III su 88.4 2 4.4E-05 55.2 10.4 88 68-162 29-144 (527)
57 PRK08691 DNA polymerase III su 88.3 2.3 5E-05 55.3 10.7 88 67-161 28-143 (709)
58 COG3074 Uncharacterized protei 88.1 6.9 0.00015 34.3 9.8 69 762-844 6-74 (79)
59 PRK14963 DNA polymerase III su 88.1 2.1 4.6E-05 54.6 10.2 82 75-161 35-140 (504)
60 PRK13341 recombination factor 88.1 1.6 3.4E-05 58.1 9.3 85 61-147 37-122 (725)
61 PRK14959 DNA polymerase III su 87.8 2.5 5.3E-05 54.7 10.5 92 65-161 26-143 (624)
62 PRK05564 DNA polymerase III su 87.7 1.9 4.2E-05 51.7 9.2 90 67-161 16-117 (313)
63 PRK05342 clpX ATP-dependent pr 87.7 1.2 2.6E-05 55.1 7.5 78 26-109 59-142 (412)
64 PRK00080 ruvB Holliday junctio 87.6 2.4 5.1E-05 51.4 9.9 87 54-148 27-116 (328)
65 TIGR03346 chaperone_ClpB ATP-d 87.2 1.6 3.5E-05 59.6 9.0 89 50-142 170-274 (852)
66 PRK06645 DNA polymerase III su 87.0 2.3 5E-05 54.1 9.6 79 76-161 44-152 (507)
67 PLN03025 replication factor C 86.4 2.9 6.3E-05 50.4 9.7 73 76-148 35-113 (319)
68 CHL00195 ycf46 Ycf46; Provisio 86.1 3.3 7.2E-05 52.5 10.3 68 72-144 257-328 (489)
69 PF15030 DUF4527: Protein of u 86.1 16 0.00034 40.4 13.6 93 773-865 43-135 (277)
70 CHL00095 clpC Clp protease ATP 86.0 1.8 4E-05 59.0 8.5 81 54-140 181-277 (821)
71 PRK14958 DNA polymerase III su 85.8 3.2 6.9E-05 53.1 10.0 91 67-162 28-144 (509)
72 smart00382 AAA ATPases associa 85.5 1.9 4.1E-05 44.1 6.6 38 74-111 1-41 (148)
73 TIGR01243 CDC48 AAA family ATP 85.4 2.4 5.2E-05 57.2 9.2 69 71-144 484-556 (733)
74 PRK05896 DNA polymerase III su 85.3 3.6 7.7E-05 53.0 10.0 101 54-162 18-144 (605)
75 cd01129 PulE-GspE PulE/GspE Th 85.2 1.2 2.6E-05 52.0 5.4 52 62-113 67-121 (264)
76 PF05496 RuvB_N: Holliday junc 85.1 3.3 7.2E-05 46.3 8.4 52 73-128 48-99 (233)
77 PRK14948 DNA polymerase III su 84.9 3.8 8.2E-05 53.7 10.2 104 53-162 17-146 (620)
78 PRK10733 hflB ATP-dependent me 84.8 2.7 5.8E-05 55.6 9.0 65 74-143 185-253 (644)
79 PF05278 PEARLI-4: Arabidopsis 84.3 26 0.00056 40.2 14.9 25 830-854 242-266 (269)
80 PRK03992 proteasome-activating 84.1 2.6 5.6E-05 52.2 7.9 68 74-145 164-235 (389)
81 PRK13948 shikimate kinase; Pro 84.0 2.3 5E-05 46.5 6.6 73 74-148 9-94 (182)
82 PRK12402 replication factor C 83.5 4.4 9.5E-05 49.2 9.6 37 58-97 21-58 (337)
83 KOG2572|consensus 83.4 0.66 1.4E-05 54.2 2.1 8 1538-1545 389-396 (498)
84 cd07666 BAR_SNX7 The Bin/Amphi 83.1 36 0.00078 39.0 15.7 66 801-883 176-242 (243)
85 COG1196 Smc Chromosome segrega 83.1 2.4E+02 0.0053 40.5 32.5 33 70-102 19-51 (1163)
86 PRK11637 AmiB activator; Provi 82.9 9.7 0.00021 47.9 12.5 72 757-828 44-115 (428)
87 PF10473 CENP-F_leu_zip: Leuci 82.8 20 0.00044 37.1 12.3 89 761-849 11-99 (140)
88 PRK05563 DNA polymerase III su 82.8 4.9 0.00011 52.2 9.9 83 75-162 37-144 (559)
89 PRK14964 DNA polymerase III su 82.8 5.6 0.00012 50.3 10.1 81 77-162 37-141 (491)
90 COG2607 Predicted ATPase (AAA+ 82.6 2.3 5.1E-05 47.3 5.8 51 58-109 66-120 (287)
91 PHA02244 ATPase-like protein 82.5 4.3 9.3E-05 49.0 8.4 87 967-1059 173-269 (383)
92 KOG0731|consensus 82.2 5 0.00011 52.5 9.5 97 21-143 308-412 (774)
93 PRK00440 rfc replication facto 82.0 7.1 0.00015 46.9 10.6 83 76-158 39-126 (319)
94 COG1122 CbiO ABC-type cobalt t 81.7 2.1 4.5E-05 48.8 5.4 81 72-161 26-109 (235)
95 COG1579 Zn-ribbon protein, pos 81.7 31 0.00068 39.1 14.3 36 751-786 43-78 (239)
96 PRK08451 DNA polymerase III su 81.6 7 0.00015 50.0 10.5 102 54-162 16-142 (535)
97 PTZ00454 26S protease regulato 81.6 2.9 6.2E-05 51.8 6.9 67 74-144 178-248 (398)
98 KOG0804|consensus 81.4 22 0.00048 43.0 13.4 79 772-850 352-430 (493)
99 PF01637 Arch_ATPase: Archaeal 81.3 4.3 9.3E-05 46.0 8.0 37 63-99 7-44 (234)
100 TIGR01242 26Sp45 26S proteasom 81.3 2.4 5.3E-05 52.1 6.2 35 72-107 154-188 (364)
101 KOG2572|consensus 81.3 0.77 1.7E-05 53.7 1.7 15 1339-1353 283-297 (498)
102 COG3973 Superfamily I DNA and 81.2 3.3 7.1E-05 51.8 6.9 70 58-158 207-280 (747)
103 PRK13949 shikimate kinase; Pro 81.1 3.2 6.9E-05 44.9 6.3 51 77-127 3-66 (169)
104 PRK10884 SH3 domain-containing 81.0 35 0.00076 38.1 14.3 75 746-823 93-167 (206)
105 PF08317 Spc7: Spc7 kinetochor 80.9 9.5 0.00021 46.0 10.9 82 760-844 209-290 (325)
106 COG0714 MoxR-like ATPases [Gen 80.8 1.7 3.7E-05 52.7 4.5 43 73-115 41-83 (329)
107 PRK14954 DNA polymerase III su 80.8 7.2 0.00016 50.9 10.4 96 62-162 22-152 (620)
108 PF07726 AAA_3: ATPase family 80.8 1.6 3.4E-05 44.4 3.4 33 77-109 1-33 (131)
109 PRK05057 aroK shikimate kinase 80.3 3.5 7.7E-05 44.7 6.4 69 75-145 4-85 (172)
110 PRK05707 DNA polymerase III su 80.1 6.3 0.00014 47.5 9.0 82 76-162 22-131 (328)
111 PF04111 APG6: Autophagy prote 79.9 8.1 0.00018 46.2 9.7 8 859-866 143-150 (314)
112 PRK11034 clpA ATP-dependent Cl 79.6 4.4 9.4E-05 54.2 8.0 89 51-144 184-288 (758)
113 PRK05201 hslU ATP-dependent pr 79.6 5 0.00011 49.2 7.8 35 75-109 50-84 (443)
114 COG3883 Uncharacterized protei 79.3 18 0.00039 41.5 11.5 66 755-820 33-98 (265)
115 PRK13947 shikimate kinase; Pro 79.3 4.6 9.9E-05 43.6 6.9 31 77-107 3-33 (171)
116 COG3074 Uncharacterized protei 79.1 34 0.00073 30.2 10.2 64 781-851 11-74 (79)
117 PRK15422 septal ring assembly 79.0 25 0.00055 32.2 9.9 68 762-843 6-73 (79)
118 KOG0250|consensus 78.8 24 0.00053 47.5 14.0 66 732-797 265-332 (1074)
119 PRK14950 DNA polymerase III su 78.6 8 0.00017 50.7 10.0 102 53-162 17-145 (585)
120 TIGR03345 VI_ClpV1 type VI sec 78.6 4.9 0.00011 54.8 8.2 103 53-162 567-696 (852)
121 PF05673 DUF815: Protein of un 78.5 8.8 0.00019 43.6 8.8 38 72-109 49-87 (249)
122 COG4372 Uncharacterized protei 78.5 44 0.00096 39.6 14.3 100 745-851 73-179 (499)
123 PRK13946 shikimate kinase; Pro 78.4 3.7 8.1E-05 45.1 5.9 70 77-148 12-94 (184)
124 KOG0994|consensus 78.2 48 0.001 44.6 15.8 107 712-818 1476-1600(1758)
125 TIGR00763 lon ATP-dependent pr 78.1 5.7 0.00012 53.9 8.7 86 58-146 326-426 (775)
126 TIGR03495 phage_LysB phage lys 78.1 23 0.00051 36.4 10.8 77 761-837 20-99 (135)
127 PF12774 AAA_6: Hydrolytic ATP 78.0 43 0.00094 38.2 14.4 179 928-1186 30-224 (231)
128 PRK14953 DNA polymerase III su 77.9 11 0.00024 48.0 10.6 83 75-162 37-144 (486)
129 TIGR00382 clpX endopeptidase C 77.9 5.5 0.00012 49.3 7.6 33 75-107 116-148 (413)
130 PF06005 DUF904: Protein of un 77.6 34 0.00073 31.3 10.5 58 761-818 5-62 (72)
131 PF03962 Mnd1: Mnd1 family; I 77.5 41 0.00089 37.0 13.5 112 735-847 50-166 (188)
132 TIGR01243 CDC48 AAA family ATP 77.2 8.3 0.00018 52.1 9.8 66 74-143 211-280 (733)
133 COG4026 Uncharacterized protei 77.1 19 0.00041 39.2 10.1 53 748-800 130-182 (290)
134 PF07888 CALCOCO1: Calcium bin 76.9 27 0.00059 44.2 13.1 89 760-848 143-231 (546)
135 COG3267 ExeA Type II secretory 76.8 13 0.00028 42.3 9.3 96 64-160 40-157 (269)
136 KOG0730|consensus 76.8 7.8 0.00017 49.4 8.4 95 22-138 432-531 (693)
137 COG0542 clpA ATP-binding subun 76.6 1.1E+02 0.0024 40.9 19.0 137 934-1080 525-689 (786)
138 PF00025 Arf: ADP-ribosylation 76.5 7.7 0.00017 42.2 7.7 29 68-96 6-35 (175)
139 COG1219 ClpX ATP-dependent pro 76.4 3.4 7.3E-05 47.9 4.8 70 23-98 46-121 (408)
140 KOG2138|consensus 76.3 1.7 3.6E-05 54.4 2.5 13 930-942 454-466 (883)
141 PRK07003 DNA polymerase III su 76.1 59 0.0013 43.1 16.2 92 975-1083 120-211 (830)
142 PRK10865 protein disaggregatio 75.8 9.1 0.0002 52.4 9.6 107 54-162 570-698 (857)
143 TIGR02640 gas_vesic_GvpN gas v 75.8 13 0.00029 43.3 9.9 90 967-1059 98-194 (262)
144 PF11932 DUF3450: Protein of u 75.7 64 0.0014 37.4 15.3 35 860-894 118-152 (251)
145 PRK08154 anaerobic benzoate ca 75.6 6.1 0.00013 47.4 7.1 49 57-106 116-164 (309)
146 PRK07952 DNA replication prote 75.5 15 0.00033 42.2 9.9 94 60-160 84-190 (244)
147 PRK13531 regulatory ATPase Rav 75.4 3 6.6E-05 52.0 4.5 57 32-99 7-63 (498)
148 TIGR02168 SMC_prok_B chromosom 74.9 31 0.00066 49.7 15.3 30 72-101 20-49 (1179)
149 KOG1962|consensus 74.8 13 0.00029 41.1 8.6 62 758-819 149-210 (216)
150 PF10205 KLRAQ: Predicted coil 74.7 39 0.00085 32.8 10.6 70 746-815 5-74 (102)
151 PRK15422 septal ring assembly 74.6 46 0.00099 30.6 10.2 66 779-851 9-74 (79)
152 PF10234 Cluap1: Clusterin-ass 74.4 45 0.00097 38.5 13.0 102 748-850 137-238 (267)
153 PRK09111 DNA polymerase III su 74.4 12 0.00027 48.7 9.8 104 53-162 25-157 (598)
154 PRK00625 shikimate kinase; Pro 74.3 6.6 0.00014 42.7 6.3 31 77-107 2-32 (173)
155 PTZ00361 26 proteosome regulat 74.1 12 0.00026 46.9 9.2 63 75-140 217-282 (438)
156 TIGR00390 hslU ATP-dependent p 73.9 6 0.00013 48.5 6.3 35 75-109 47-81 (441)
157 PF08317 Spc7: Spc7 kinetochor 73.6 53 0.0011 39.7 14.4 97 747-847 185-286 (325)
158 PRK09039 hypothetical protein; 73.5 37 0.0008 41.2 13.0 62 760-821 123-184 (343)
159 PRK14955 DNA polymerase III su 73.5 13 0.00027 46.4 9.4 89 67-160 28-150 (397)
160 KOG0733|consensus 73.4 7.7 0.00017 48.8 7.0 68 71-143 220-291 (802)
161 CHL00095 clpC Clp protease ATP 73.3 11 0.00024 51.5 9.5 107 54-162 511-639 (821)
162 PLN02199 shikimate kinase 73.2 8.9 0.00019 44.9 7.2 89 56-148 83-187 (303)
163 PHA02244 ATPase-like protein 72.9 4.5 9.8E-05 48.8 4.9 42 65-107 110-151 (383)
164 PF12781 AAA_9: ATP-binding dy 72.9 0.096 2.1E-06 59.4 -8.6 108 123-251 96-208 (228)
165 PRK09039 hypothetical protein; 72.8 46 0.00099 40.4 13.6 72 778-849 113-184 (343)
166 CHL00206 ycf2 Ycf2; Provisiona 72.8 5.8 0.00013 56.5 6.5 38 72-110 1628-1665(2281)
167 TIGR01420 pilT_fam pilus retra 72.7 3.7 8E-05 50.0 4.3 43 67-109 114-160 (343)
168 PF12329 TMF_DNA_bd: TATA elem 72.6 35 0.00077 31.3 9.5 69 752-820 4-72 (74)
169 TIGR02894 DNA_bind_RsfA transc 72.4 29 0.00064 36.5 9.9 53 774-826 104-156 (161)
170 KOG0977|consensus 72.3 41 0.0009 42.6 13.1 100 748-847 115-214 (546)
171 PF11559 ADIP: Afadin- and alp 72.3 82 0.0018 33.3 13.9 44 757-800 63-106 (151)
172 KOG0738|consensus 72.1 4.8 0.0001 47.9 4.7 75 71-160 241-319 (491)
173 PRK00131 aroK shikimate kinase 72.0 7.3 0.00016 42.0 6.1 30 77-106 6-35 (175)
174 PRK11889 flhF flagellar biosyn 71.8 2.6 5.5E-05 51.2 2.5 24 76-99 242-266 (436)
175 TIGR03420 DnaA_homol_Hda DnaA 71.7 15 0.00033 41.5 8.9 67 72-148 35-104 (226)
176 KOG0980|consensus 71.5 46 0.00099 43.8 13.3 102 743-851 442-543 (980)
177 TIGR02880 cbbX_cfxQ probable R 71.3 6.5 0.00014 46.5 5.8 24 74-97 57-80 (284)
178 PRK08118 topology modulation p 71.2 3.3 7.2E-05 44.7 3.1 30 77-106 3-32 (167)
179 PRK04863 mukB cell division pr 71.2 1.3E+02 0.0029 43.6 19.3 30 70-99 22-51 (1486)
180 COG4026 Uncharacterized protei 71.0 38 0.00083 37.0 10.6 32 787-818 141-172 (290)
181 TIGR02928 orc1/cdc6 family rep 70.9 13 0.00028 45.6 8.7 44 54-97 17-62 (365)
182 KOG2138|consensus 70.7 2.8 6E-05 52.6 2.5 7 1545-1551 781-787 (883)
183 PF08614 ATG16: Autophagy prot 70.6 29 0.00063 38.5 10.4 81 760-840 102-186 (194)
184 PF06005 DUF904: Protein of un 70.4 62 0.0013 29.6 10.4 17 830-846 53-69 (72)
185 TIGR02533 type_II_gspE general 70.3 5.2 0.00011 50.9 5.0 53 62-114 229-284 (486)
186 PRK00411 cdc6 cell division co 70.2 13 0.00028 46.3 8.5 40 58-97 36-77 (394)
187 KOG2028|consensus 70.2 9.1 0.0002 45.1 6.3 63 76-142 163-229 (554)
188 PF08614 ATG16: Autophagy prot 69.9 26 0.00056 38.9 9.9 107 758-882 79-185 (194)
189 KOG0804|consensus 69.8 77 0.0017 38.7 13.8 108 740-849 336-447 (493)
190 PF12325 TMF_TATA_bd: TATA ele 69.8 95 0.0021 31.5 12.7 90 760-849 23-115 (120)
191 KOG1029|consensus 69.8 30 0.00065 44.4 10.9 100 760-859 437-537 (1118)
192 PF13245 AAA_19: Part of AAA d 69.7 5.9 0.00013 36.6 3.9 31 68-99 4-35 (76)
193 PF13207 AAA_17: AAA domain; P 69.7 5.1 0.00011 40.3 4.0 29 78-106 2-30 (121)
194 PF10168 Nup88: Nuclear pore c 69.5 64 0.0014 43.1 14.8 87 760-849 565-651 (717)
195 COG0464 SpoVK ATPases of the A 69.3 13 0.00029 47.8 8.5 69 71-143 272-344 (494)
196 smart00787 Spc7 Spc7 kinetocho 69.2 77 0.0017 37.9 14.0 56 761-816 205-260 (312)
197 COG0542 clpA ATP-binding subun 69.2 6.3 0.00014 52.0 5.4 64 54-121 493-564 (786)
198 PRK10436 hypothetical protein; 69.1 6.5 0.00014 49.6 5.4 53 62-114 205-260 (462)
199 KOG2573|consensus 69.1 1.8 4E-05 50.8 0.6 6 1402-1407 252-257 (498)
200 PF10146 zf-C4H2: Zinc finger- 69.0 77 0.0017 36.0 13.3 79 771-849 15-93 (230)
201 TIGR02397 dnaX_nterm DNA polym 68.9 23 0.0005 43.3 10.3 99 53-160 15-140 (355)
202 TIGR02169 SMC_prok_A chromosom 68.9 39 0.00085 48.6 14.2 31 71-101 19-49 (1164)
203 PRK14965 DNA polymerase III su 68.6 22 0.00048 46.5 10.3 102 53-162 17-144 (576)
204 PF04728 LPP: Lipoprotein leuc 68.4 41 0.00089 28.9 8.1 46 775-820 4-49 (56)
205 PRK04863 mukB cell division pr 68.4 53 0.0011 47.5 14.5 95 783-877 350-446 (1486)
206 TIGR00767 rho transcription te 68.4 20 0.00042 44.0 9.0 83 75-162 168-280 (415)
207 PF10278 Med19: Mediator of RN 68.4 2 4.4E-05 45.7 0.6 19 1467-1485 39-57 (178)
208 PF05384 DegS: Sensor protein 68.3 1.3E+02 0.0028 32.2 13.8 48 782-829 85-132 (159)
209 PF07926 TPR_MLP1_2: TPR/MLP1/ 68.2 1.5E+02 0.0032 30.6 14.3 26 824-849 85-110 (132)
210 PRK14970 DNA polymerase III su 68.1 21 0.00046 43.9 9.7 100 53-160 18-131 (367)
211 PF08647 BRE1: BRE1 E3 ubiquit 68.0 80 0.0017 30.7 11.5 70 761-830 11-80 (96)
212 PF00261 Tropomyosin: Tropomyo 68.0 75 0.0016 36.5 13.4 61 758-818 97-157 (237)
213 PRK08084 DNA replication initi 67.8 23 0.00049 40.7 9.1 92 58-162 30-131 (235)
214 TIGR03346 chaperone_ClpB ATP-d 67.8 19 0.00041 49.5 9.9 56 54-109 567-632 (852)
215 cd01131 PilT Pilus retraction 67.7 5.3 0.00011 44.5 3.9 35 75-109 1-39 (198)
216 TIGR02782 TrbB_P P-type conjug 67.6 7.7 0.00017 46.1 5.4 36 74-109 131-171 (299)
217 KOG2264|consensus 67.5 35 0.00077 42.1 10.6 62 762-823 88-149 (907)
218 PRK13430 F0F1 ATP synthase sub 67.3 27 0.00058 41.0 9.6 208 783-1018 27-257 (271)
219 PF13555 AAA_29: P-loop contai 66.9 3.8 8.3E-05 36.1 2.0 25 74-98 21-46 (62)
220 cd00464 SK Shikimate kinase (S 66.9 5.1 0.00011 42.3 3.4 30 77-106 1-30 (154)
221 PRK03731 aroL shikimate kinase 66.8 13 0.00029 40.0 6.7 32 76-107 3-34 (171)
222 TIGR02881 spore_V_K stage V sp 66.7 6.8 0.00015 45.7 4.7 24 75-98 42-65 (261)
223 PRK02224 chromosome segregatio 66.4 38 0.00081 47.1 12.7 28 71-98 19-46 (880)
224 KOG0994|consensus 66.4 79 0.0017 42.7 13.9 80 751-830 1589-1668(1758)
225 TIGR02524 dot_icm_DotB Dot/Icm 66.3 5.8 0.00013 48.4 4.1 46 68-113 127-178 (358)
226 PRK06647 DNA polymerase III su 65.8 21 0.00046 46.3 9.3 91 67-162 28-144 (563)
227 TIGR02169 SMC_prok_A chromosom 65.8 54 0.0012 47.2 14.5 17 931-947 549-565 (1164)
228 KOG0996|consensus 65.6 63 0.0014 44.0 13.1 101 749-849 468-568 (1293)
229 PRK06217 hypothetical protein; 65.6 5.5 0.00012 43.7 3.4 29 77-105 3-31 (183)
230 KOG2355|consensus 65.5 5.6 0.00012 43.2 3.2 43 71-118 35-80 (291)
231 PHA02562 46 endonuclease subun 65.5 53 0.0011 43.0 13.2 85 753-837 323-407 (562)
232 TIGR02680 conserved hypothetic 65.5 99 0.0021 44.9 16.6 114 740-853 848-965 (1353)
233 TIGR02168 SMC_prok_B chromosom 65.4 57 0.0012 47.0 14.7 8 962-969 533-540 (1179)
234 PF13177 DNA_pol3_delta2: DNA 65.3 29 0.00063 37.2 8.8 97 59-162 4-127 (162)
235 PRK11608 pspF phage shock prot 65.2 25 0.00053 42.5 9.2 103 54-162 8-128 (326)
236 COG2019 AdkA Archaeal adenylat 65.1 1.6 3.6E-05 45.8 -0.7 46 77-122 6-57 (189)
237 PRK03918 chromosome segregatio 65.0 65 0.0014 44.8 14.6 28 71-98 19-46 (880)
238 PRK12377 putative replication 64.7 34 0.00074 39.5 9.7 95 60-160 86-191 (248)
239 TIGR02538 type_IV_pilB type IV 64.3 8.2 0.00018 50.3 5.2 53 62-114 303-358 (564)
240 PRK09087 hypothetical protein; 64.3 18 0.0004 41.1 7.4 70 77-162 46-118 (226)
241 PF11172 DUF2959: Protein of u 64.1 98 0.0021 33.9 12.1 94 748-844 11-110 (201)
242 PRK12704 phosphodiesterase; Pr 63.7 1.4E+02 0.003 38.6 15.7 74 759-832 81-154 (520)
243 PRK07993 DNA polymerase III su 63.4 29 0.00063 42.0 9.3 95 63-162 10-133 (334)
244 PF07724 AAA_2: AAA domain (Cd 63.3 4.8 0.0001 43.6 2.4 28 73-100 1-28 (171)
245 PRK07471 DNA polymerase III su 63.2 29 0.00064 42.5 9.4 102 54-162 21-166 (365)
246 PF04665 Pox_A32: Poxvirus A32 63.0 31 0.00067 39.5 8.8 17 77-93 15-31 (241)
247 KOG1962|consensus 63.0 72 0.0016 35.5 11.2 25 823-847 186-210 (216)
248 COG1196 Smc Chromosome segrega 62.8 75 0.0016 45.5 14.6 82 768-849 752-833 (1163)
249 TIGR03185 DNA_S_dndD DNA sulfu 62.6 1.3E+02 0.0029 40.1 16.1 24 76-99 29-52 (650)
250 TIGR01650 PD_CobS cobaltochela 62.6 45 0.00097 40.0 10.3 59 968-1028 128-186 (327)
251 KOG2573|consensus 62.5 2.5 5.3E-05 49.8 -0.1 7 1387-1393 266-272 (498)
252 PF09325 Vps5: Vps5 C terminal 62.4 63 0.0014 36.9 11.6 122 744-882 112-234 (236)
253 PRK07261 topology modulation p 62.1 6.9 0.00015 42.4 3.4 25 78-102 3-27 (171)
254 PF09728 Taxilin: Myosin-like 61.8 1.4E+02 0.003 35.8 14.3 91 757-847 164-261 (309)
255 PF13191 AAA_16: AAA ATPase do 61.6 5.9 0.00013 43.2 2.8 38 72-109 21-61 (185)
256 PLN02165 adenylate isopentenyl 61.5 14 0.0003 44.2 5.9 29 70-98 37-67 (334)
257 PF04156 IncA: IncA protein; 61.5 1.6E+02 0.0034 32.5 14.1 23 785-807 127-149 (191)
258 COG1119 ModF ABC-type molybden 61.2 6.6 0.00014 44.3 3.0 52 73-124 55-107 (257)
259 PF03908 Sec20: Sec20; InterP 61.0 1E+02 0.0023 29.5 10.8 57 773-829 7-63 (92)
260 PRK07276 DNA polymerase III su 61.0 33 0.00071 40.5 8.8 91 66-162 13-129 (290)
261 COG4619 ABC-type uncharacteriz 60.8 12 0.00025 39.8 4.4 49 73-121 27-79 (223)
262 PF15619 Lebercilin: Ciliary p 60.7 57 0.0012 36.1 10.0 81 750-830 65-146 (194)
263 COG1419 FlhF Flagellar GTP-bin 60.7 7.4 0.00016 47.3 3.5 45 53-99 179-228 (407)
264 PF07888 CALCOCO1: Calcium bin 60.6 1.1E+02 0.0025 38.9 13.6 32 1064-1095 349-380 (546)
265 PRK00091 miaA tRNA delta(2)-is 60.5 12 0.00025 44.7 5.1 67 77-145 6-104 (307)
266 PRK06620 hypothetical protein; 60.5 23 0.0005 40.0 7.2 86 59-162 26-114 (214)
267 PF00580 UvrD-helicase: UvrD/R 60.4 7 0.00015 46.7 3.3 30 69-98 7-37 (315)
268 TIGR03689 pup_AAA proteasome A 59.9 13 0.00028 47.4 5.6 27 74-100 215-241 (512)
269 PF00158 Sigma54_activat: Sigm 59.9 10 0.00023 40.9 4.2 40 58-97 5-44 (168)
270 PRK03839 putative kinase; Prov 59.9 7.6 0.00016 42.4 3.2 29 77-105 2-30 (180)
271 PF11559 ADIP: Afadin- and alp 59.9 2.1E+02 0.0046 30.2 14.1 58 777-834 62-119 (151)
272 PF05335 DUF745: Protein of un 59.8 1.7E+02 0.0036 32.3 13.2 92 754-845 61-152 (188)
273 COG4372 Uncharacterized protei 59.6 1.5E+02 0.0033 35.4 13.3 58 758-815 121-178 (499)
274 COG2433 Uncharacterized conser 59.5 34 0.00074 43.2 8.8 77 752-828 421-500 (652)
275 TIGR02680 conserved hypothetic 59.5 86 0.0019 45.5 14.3 112 737-848 267-386 (1353)
276 PF09728 Taxilin: Myosin-like 59.5 1.2E+02 0.0026 36.3 13.2 98 754-851 203-300 (309)
277 PF10481 CENP-F_N: Cenp-F N-te 59.4 67 0.0015 36.5 10.1 81 787-869 73-156 (307)
278 PF10473 CENP-F_leu_zip: Leuci 59.4 2.3E+02 0.005 29.6 13.9 49 770-818 48-96 (140)
279 PRK08699 DNA polymerase III su 59.3 30 0.00066 41.7 8.4 80 76-160 21-136 (325)
280 PF04111 APG6: Autophagy prote 59.3 1.2E+02 0.0026 36.4 13.3 72 752-823 56-127 (314)
281 PF05278 PEARLI-4: Arabidopsis 59.3 1.7E+02 0.0036 33.9 13.5 56 761-816 201-256 (269)
282 PF02841 GBP_C: Guanylate-bind 59.2 77 0.0017 37.7 11.8 58 738-795 168-225 (297)
283 PF00437 T2SE: Type II/IV secr 59.0 9.7 0.00021 44.6 4.1 49 65-113 114-168 (270)
284 PRK10078 ribose 1,5-bisphospho 58.9 7.9 0.00017 42.6 3.2 25 77-101 4-28 (186)
285 PF00769 ERM: Ezrin/radixin/mo 58.8 1.2E+02 0.0025 35.2 12.6 53 792-844 65-117 (246)
286 PRK06871 DNA polymerase III su 58.7 44 0.00095 40.2 9.5 95 63-162 10-132 (325)
287 PF10481 CENP-F_N: Cenp-F N-te 58.5 1.6E+02 0.0034 33.7 12.7 29 819-847 91-119 (307)
288 cd02027 APSK Adenosine 5'-phos 58.5 20 0.00042 37.9 5.9 29 78-106 2-33 (149)
289 COG0470 HolB ATPase involved i 58.5 26 0.00056 42.1 7.9 85 75-162 23-134 (325)
290 COG1126 GlnQ ABC-type polar am 58.5 16 0.00034 40.6 5.1 54 73-129 25-80 (240)
291 PRK08116 hypothetical protein; 58.3 60 0.0013 38.0 10.5 94 60-160 96-206 (268)
292 PRK08903 DnaA regulatory inact 58.2 34 0.00074 38.8 8.4 35 73-107 40-77 (227)
293 PF00448 SRP54: SRP54-type pro 58.1 7.9 0.00017 43.0 3.0 22 78-99 4-26 (196)
294 COG4942 Membrane-bound metallo 58.0 66 0.0014 39.5 10.7 68 763-830 34-101 (420)
295 PRK08233 hypothetical protein; 57.8 12 0.00027 40.6 4.5 28 79-106 7-35 (182)
296 PF04156 IncA: IncA protein; 57.6 1.2E+02 0.0025 33.5 12.2 65 766-830 80-144 (191)
297 COG3638 ABC-type phosphate/pho 57.4 31 0.00066 38.9 7.2 69 73-150 27-97 (258)
298 cd03281 ABC_MSH5_euk MutS5 hom 57.4 20 0.00043 40.4 6.1 20 77-96 31-50 (213)
299 PF10186 Atg14: UV radiation r 57.3 2.5E+02 0.0055 33.1 16.0 72 774-845 63-134 (302)
300 PTZ00202 tuzin; Provisional 57.2 42 0.0009 41.6 8.8 74 50-129 257-334 (550)
301 KOG0161|consensus 57.0 1.1E+02 0.0024 45.0 14.2 88 753-840 936-1023(1930)
302 PRK00106 hypothetical protein; 56.8 2.3E+02 0.0051 36.4 15.8 72 761-832 98-169 (535)
303 PF00005 ABC_tran: ABC transpo 56.8 8.1 0.00018 39.9 2.7 26 74-99 10-35 (137)
304 COG0703 AroK Shikimate kinase 56.8 22 0.00048 38.3 5.9 81 76-161 3-96 (172)
305 PF07106 TBPIP: Tat binding pr 56.5 46 0.00099 36.0 8.5 66 758-823 70-137 (169)
306 TIGR02525 plasmid_TraJ plasmid 56.4 13 0.00028 45.6 4.6 43 71-113 145-192 (372)
307 cd03264 ABC_drug_resistance_li 56.4 7.7 0.00017 43.6 2.6 27 72-98 22-48 (211)
308 PRK06547 hypothetical protein; 56.3 15 0.00032 40.0 4.6 28 77-104 17-44 (172)
309 KOG3809|consensus 56.2 9.9 0.00022 45.2 3.4 23 1498-1520 92-114 (583)
310 KOG0734|consensus 56.2 20 0.00043 44.5 6.0 62 72-142 335-404 (752)
311 COG5185 HEC1 Protein involved 56.2 79 0.0017 38.5 10.6 91 748-849 266-356 (622)
312 PF13173 AAA_14: AAA domain 55.8 30 0.00064 35.4 6.6 82 75-161 2-87 (128)
313 PF05529 Bap31: B-cell recepto 55.7 68 0.0015 35.5 9.9 71 745-815 117-188 (192)
314 PRK13407 bchI magnesium chelat 55.5 9.1 0.0002 46.1 3.1 26 74-99 27-53 (334)
315 KOG0933|consensus 55.4 91 0.002 41.8 11.8 104 750-853 812-915 (1174)
316 smart00787 Spc7 Spc7 kinetocho 55.4 1.8E+02 0.004 34.8 13.8 57 768-824 205-261 (312)
317 PRK03918 chromosome segregatio 55.2 96 0.0021 43.2 13.6 22 1023-1047 847-868 (880)
318 PRK13765 ATP-dependent proteas 55.2 16 0.00035 47.9 5.5 42 54-99 33-74 (637)
319 cd00820 PEPCK_HprK Phosphoenol 54.8 9 0.00019 37.9 2.4 20 77-96 17-36 (107)
320 PRK14971 DNA polymerase III su 54.6 57 0.0012 43.0 10.4 88 67-162 29-146 (614)
321 TIGR03319 YmdA_YtgF conserved 54.5 93 0.002 40.0 12.0 19 965-985 227-245 (514)
322 TIGR02788 VirB11 P-type DNA tr 54.4 15 0.00033 43.9 4.8 35 73-107 142-178 (308)
323 PF12128 DUF3584: Protein of u 54.4 48 0.001 47.6 10.4 82 760-841 476-558 (1201)
324 PRK09112 DNA polymerase III su 54.2 55 0.0012 39.9 9.6 102 53-162 24-166 (351)
325 PF06818 Fez1: Fez1; InterPro 54.1 1.3E+02 0.0028 33.3 11.1 83 765-847 15-97 (202)
326 TIGR02902 spore_lonB ATP-depen 54.1 61 0.0013 42.0 10.5 94 974-1071 175-284 (531)
327 PRK10416 signal recognition pa 54.1 39 0.00085 40.6 8.1 25 75-99 114-139 (318)
328 cd03292 ABC_FtsE_transporter F 53.8 9.3 0.0002 43.0 2.7 26 74-99 26-51 (214)
329 PF03962 Mnd1: Mnd1 family; I 53.8 1.1E+02 0.0024 33.8 10.8 86 761-846 63-158 (188)
330 PF13747 DUF4164: Domain of un 53.7 1.9E+02 0.004 27.8 10.9 29 792-820 50-78 (89)
331 KOG0977|consensus 53.6 1.4E+02 0.003 38.2 12.7 69 749-817 109-177 (546)
332 PRK13894 conjugal transfer ATP 53.4 19 0.00041 43.3 5.3 39 74-112 147-190 (319)
333 PF15112 DUF4559: Domain of un 53.3 1.7E+02 0.0037 34.3 12.4 163 675-853 126-297 (307)
334 PF11932 DUF3450: Protein of u 53.2 1.8E+02 0.004 33.6 13.3 11 963-973 220-230 (251)
335 PF10146 zf-C4H2: Zinc finger- 53.2 2.9E+02 0.0062 31.5 14.2 78 768-845 26-103 (230)
336 KOG0243|consensus 53.0 1.9E+02 0.0041 39.6 14.4 83 746-828 434-523 (1041)
337 PF06785 UPF0242: Uncharacteri 53.0 2.6E+02 0.0056 32.9 13.6 15 732-746 45-59 (401)
338 PHA02562 46 endonuclease subun 52.8 2.6E+02 0.0057 36.5 16.4 26 75-100 27-52 (562)
339 KOG3091|consensus 52.8 80 0.0017 39.1 10.2 67 764-830 338-404 (508)
340 PF00038 Filament: Intermediat 52.8 1.7E+02 0.0037 35.0 13.5 80 761-840 196-279 (312)
341 PRK06305 DNA polymerase III su 52.8 60 0.0013 41.1 9.9 100 53-160 18-144 (451)
342 KOG4364|consensus 52.7 15 0.00032 46.3 4.2 7 1377-1383 95-101 (811)
343 PRK08058 DNA polymerase III su 52.6 48 0.001 40.1 8.7 92 66-162 17-135 (329)
344 PRK09825 idnK D-gluconate kina 52.5 14 0.0003 40.3 3.7 29 73-101 1-29 (176)
345 PF13671 AAA_33: AAA domain; P 52.5 9.2 0.0002 39.7 2.2 19 78-96 2-20 (143)
346 PRK00300 gmk guanylate kinase; 52.4 11 0.00023 42.2 2.9 28 73-100 3-30 (205)
347 PF12325 TMF_TATA_bd: TATA ele 52.4 1.4E+02 0.003 30.3 10.3 14 835-848 73-86 (120)
348 PF10186 Atg14: UV radiation r 52.3 2.8E+02 0.0061 32.7 15.3 14 824-837 124-137 (302)
349 PRK04406 hypothetical protein; 51.7 1.1E+02 0.0024 28.3 8.6 51 771-821 8-58 (75)
350 PRK13729 conjugal transfer pil 51.6 51 0.0011 41.0 8.5 50 760-809 69-118 (475)
351 PF10779 XhlA: Haemolysin XhlA 51.5 78 0.0017 28.8 7.7 68 783-866 1-68 (71)
352 cd02021 GntK Gluconate kinase 51.4 14 0.00029 39.0 3.4 24 78-101 2-25 (150)
353 PF12780 AAA_8: P-loop contain 51.4 3.6 7.9E-05 47.9 -1.1 58 205-268 147-204 (268)
354 PF06810 Phage_GP20: Phage min 51.4 1.3E+02 0.0028 32.1 10.5 27 760-786 20-46 (155)
355 PRK00771 signal recognition pa 51.2 25 0.00053 44.1 6.0 54 74-129 94-150 (437)
356 PF09304 Cortex-I_coil: Cortex 51.2 2.5E+02 0.0055 27.6 13.4 25 787-811 43-67 (107)
357 PRK15455 PrkA family serine pr 51.1 20 0.00044 45.7 5.2 41 64-104 92-133 (644)
358 COG0465 HflB ATP-dependent Zn 51.1 21 0.00045 46.0 5.3 61 72-142 181-249 (596)
359 PF14532 Sigma54_activ_2: Sigm 51.0 18 0.00039 37.5 4.2 76 72-160 18-95 (138)
360 PRK07764 DNA polymerase III su 50.9 2.1E+02 0.0046 39.0 15.0 90 975-1082 121-211 (824)
361 PRK12723 flagellar biosynthesi 50.8 41 0.00088 41.5 7.7 24 76-99 175-199 (388)
362 cd03263 ABC_subfamily_A The AB 50.7 11 0.00024 42.5 2.8 34 74-107 27-60 (220)
363 PRK14087 dnaA chromosomal repl 50.5 59 0.0013 41.2 9.3 93 60-161 126-239 (450)
364 cd03301 ABC_MalK_N The N-termi 50.5 11 0.00025 42.3 2.7 26 74-99 25-50 (213)
365 PRK02224 chromosome segregatio 50.4 1.4E+02 0.003 41.6 13.9 44 804-848 574-617 (880)
366 cd03262 ABC_HisP_GlnQ_permease 50.4 12 0.00025 42.1 2.8 35 74-108 25-59 (213)
367 cd07651 F-BAR_PombeCdc15_like 50.3 1.9E+02 0.0042 33.1 12.8 26 824-849 176-201 (236)
368 TIGR01313 therm_gnt_kin carboh 50.3 13 0.00028 39.7 3.1 23 79-101 2-24 (163)
369 cd03216 ABC_Carb_Monos_I This 50.3 12 0.00026 40.2 2.7 26 74-99 25-50 (163)
370 KOG0161|consensus 50.1 1.5E+02 0.0032 43.8 13.7 96 758-853 1644-1739(1930)
371 PF07889 DUF1664: Protein of u 50.0 1.5E+02 0.0033 30.3 10.2 47 783-829 70-116 (126)
372 PRK14532 adenylate kinase; Pro 50.0 14 0.0003 40.7 3.3 26 77-102 2-27 (188)
373 PRK13541 cytochrome c biogenes 50.0 12 0.00025 41.5 2.7 26 74-99 25-50 (195)
374 PF10662 PduV-EutP: Ethanolami 49.8 11 0.00024 39.4 2.2 18 77-94 3-20 (143)
375 KOG0976|consensus 49.8 1.8E+02 0.0039 38.0 12.6 56 758-813 97-152 (1265)
376 TIGR03499 FlhF flagellar biosy 49.8 16 0.00035 43.2 3.9 25 75-99 194-219 (282)
377 COG2804 PulE Type II secretory 49.7 14 0.00029 46.2 3.3 35 54-91 240-274 (500)
378 cd03214 ABC_Iron-Siderophores_ 49.6 13 0.00027 40.7 2.8 25 74-98 24-48 (180)
379 KOG0733|consensus 49.5 28 0.00061 44.1 5.9 66 72-142 543-612 (802)
380 TIGR03819 heli_sec_ATPase heli 49.5 19 0.00042 43.6 4.6 44 64-107 167-212 (340)
381 PRK14088 dnaA chromosomal repl 49.3 43 0.00093 42.3 7.9 89 67-161 120-227 (440)
382 CHL00181 cbbX CbbX; Provisiona 49.2 12 0.00027 44.2 2.8 25 75-99 59-83 (287)
383 PF06008 Laminin_I: Laminin Do 49.2 3.7E+02 0.0081 31.3 15.1 121 692-821 112-246 (264)
384 PRK12422 chromosomal replicati 49.1 56 0.0012 41.2 8.8 78 77-161 143-235 (445)
385 cd03265 ABC_DrrA DrrA is the A 49.0 12 0.00027 42.2 2.7 25 74-98 25-49 (220)
386 KOG4657|consensus 49.0 2.8E+02 0.0061 30.9 12.4 24 786-809 91-114 (246)
387 TIGR02868 CydC thiol reductant 48.8 18 0.00039 47.0 4.6 35 74-108 360-394 (529)
388 smart00178 SAR Sar1p-like memb 48.8 17 0.00036 39.9 3.6 32 63-94 3-36 (184)
389 PRK13540 cytochrome c biogenes 48.8 13 0.00028 41.4 2.8 26 74-99 26-51 (200)
390 TIGR03185 DNA_S_dndD DNA sulfu 48.8 1.1E+02 0.0025 40.7 12.1 78 758-835 396-475 (650)
391 PF10805 DUF2730: Protein of u 48.7 1.1E+02 0.0024 30.3 8.9 62 758-826 33-96 (106)
392 TIGR01360 aden_kin_iso1 adenyl 48.6 16 0.00034 40.0 3.5 20 78-97 6-26 (188)
393 cd07655 F-BAR_PACSIN The F-BAR 48.6 4.6E+02 0.01 30.5 15.6 26 824-849 194-219 (258)
394 KOG0736|consensus 48.6 28 0.0006 45.3 5.8 65 74-142 704-772 (953)
395 PRK10787 DNA-binding ATP-depen 48.5 51 0.0011 44.7 8.7 36 74-109 347-383 (784)
396 PRK12727 flagellar biosynthesi 48.4 18 0.00038 46.0 4.1 26 74-99 349-375 (559)
397 cd03269 ABC_putative_ATPase Th 48.3 13 0.00028 41.7 2.8 26 74-99 25-50 (210)
398 PF01078 Mg_chelatase: Magnesi 48.3 18 0.0004 40.1 3.8 43 74-116 21-65 (206)
399 PF14662 CCDC155: Coiled-coil 48.2 4.1E+02 0.0089 29.2 14.2 69 743-811 57-125 (193)
400 TIGR00602 rad24 checkpoint pro 48.2 44 0.00096 43.9 7.8 53 53-105 85-140 (637)
401 cd03293 ABC_NrtD_SsuB_transpor 48.2 13 0.00028 42.1 2.7 28 72-99 26-54 (220)
402 TIGR03574 selen_PSTK L-seryl-t 48.1 17 0.00036 42.1 3.7 22 78-99 2-24 (249)
403 PLN03210 Resistant to P. syrin 48.0 29 0.00063 49.6 6.7 66 29-97 161-229 (1153)
404 TIGR03754 conj_TOL_TraD conjug 48.0 31 0.00067 45.1 6.3 60 71-134 176-238 (643)
405 cd03224 ABC_TM1139_LivF_branch 47.9 12 0.00026 42.3 2.5 25 74-98 25-49 (222)
406 cd07627 BAR_Vps5p The Bin/Amph 47.8 1.8E+02 0.0039 32.9 11.8 68 748-815 96-170 (216)
407 PF04012 PspA_IM30: PspA/IM30 47.8 2.1E+02 0.0046 32.3 12.5 73 774-846 105-181 (221)
408 cd03213 ABCG_EPDR ABCG transpo 47.5 13 0.00029 41.1 2.6 26 74-99 34-59 (194)
409 PF08826 DMPK_coil: DMPK coile 47.5 2E+02 0.0044 25.4 10.2 21 793-813 30-50 (61)
410 cd00071 GMPK Guanosine monopho 47.3 14 0.0003 38.5 2.5 21 78-98 2-22 (137)
411 PRK11124 artP arginine transpo 47.2 14 0.00029 42.6 2.8 25 74-98 27-51 (242)
412 TIGR01166 cbiO cobalt transpor 47.2 14 0.0003 40.7 2.8 26 74-99 17-42 (190)
413 PRK13833 conjugal transfer pro 47.1 19 0.00041 43.2 3.9 36 74-109 143-183 (323)
414 PRK14245 phosphate ABC transpo 47.1 13 0.00029 42.9 2.7 25 74-98 28-52 (250)
415 KOG4364|consensus 46.9 23 0.00051 44.6 4.7 10 1561-1570 241-250 (811)
416 cd07664 BAR_SNX2 The Bin/Amphi 46.9 1.8E+02 0.004 33.2 11.6 13 870-882 218-230 (234)
417 PF13747 DUF4164: Domain of un 46.8 2.7E+02 0.0059 26.7 11.4 58 763-820 7-64 (89)
418 cd03255 ABC_MJ0796_Lo1CDE_FtsE 46.8 14 0.0003 41.7 2.7 26 74-99 29-54 (218)
419 cd03226 ABC_cobalt_CbiO_domain 46.8 14 0.0003 41.3 2.7 26 74-99 25-50 (205)
420 TIGR03608 L_ocin_972_ABC putat 46.8 14 0.0003 41.2 2.7 26 74-99 23-48 (206)
421 TIGR02673 FtsE cell division A 46.6 14 0.00031 41.5 2.8 25 74-98 27-51 (214)
422 TIGR00064 ftsY signal recognit 46.5 57 0.0012 38.3 7.8 52 76-129 73-127 (272)
423 TIGR01277 thiQ thiamine ABC tr 46.5 14 0.0003 41.5 2.7 26 74-99 23-48 (213)
424 PF09730 BicD: Microtubule-ass 46.5 2E+02 0.0044 38.2 13.1 71 747-817 360-434 (717)
425 PF00769 ERM: Ezrin/radixin/mo 46.4 2.2E+02 0.0047 33.0 12.2 88 762-849 7-94 (246)
426 cd00227 CPT Chloramphenicol (C 46.3 19 0.00042 39.0 3.7 39 77-121 4-42 (175)
427 KOG3647|consensus 46.3 1.4E+02 0.003 33.8 9.9 63 758-820 110-179 (338)
428 PRK00149 dnaA chromosomal repl 46.3 52 0.0011 41.8 8.0 81 76-161 149-244 (450)
429 cd03258 ABC_MetN_methionine_tr 46.3 14 0.00031 42.1 2.7 26 74-99 30-55 (233)
430 PF13851 GAS: Growth-arrest sp 46.2 3E+02 0.0065 30.7 12.9 45 775-819 87-131 (201)
431 TIGR00678 holB DNA polymerase 45.9 76 0.0017 34.8 8.4 80 76-160 15-119 (188)
432 COG3883 Uncharacterized protei 45.9 1.6E+02 0.0034 34.1 10.6 54 762-815 33-86 (265)
433 cd03232 ABC_PDR_domain2 The pl 45.9 14 0.00031 40.8 2.6 24 74-97 32-55 (192)
434 PF10174 Cast: RIM-binding pro 45.7 2.3E+02 0.005 38.2 13.7 74 774-847 308-388 (775)
435 PRK10247 putative ABC transpor 45.7 15 0.00032 41.8 2.7 26 74-99 32-57 (225)
436 cd03244 ABCC_MRP_domain2 Domai 45.7 15 0.00033 41.4 2.9 26 74-99 29-54 (221)
437 TIGR01978 sufC FeS assembly AT 45.6 15 0.00032 42.3 2.7 25 74-98 25-49 (243)
438 TIGR03864 PQQ_ABC_ATP ABC tran 45.6 15 0.00032 42.1 2.7 25 74-98 26-50 (236)
439 cd03223 ABCD_peroxisomal_ALDP 45.5 16 0.00035 39.3 2.8 26 74-99 26-51 (166)
440 PRK09270 nucleoside triphospha 45.5 25 0.00054 40.1 4.5 40 57-99 16-58 (229)
441 PF04136 Sec34: Sec34-like fam 45.4 1.7E+02 0.0038 31.2 10.5 71 748-818 2-72 (157)
442 cd03259 ABC_Carb_Solutes_like 45.4 15 0.00032 41.3 2.7 27 72-98 22-49 (213)
443 PF10805 DUF2730: Protein of u 45.4 1.9E+02 0.0042 28.6 10.0 60 748-808 31-92 (106)
444 PF04849 HAP1_N: HAP1 N-termin 45.3 1.7E+02 0.0038 34.5 11.1 82 758-842 211-292 (306)
445 TIGR00960 3a0501s02 Type II (G 45.3 15 0.00032 41.4 2.7 35 74-108 28-62 (216)
446 TIGR02903 spore_lon_C ATP-depe 45.3 22 0.00048 46.8 4.6 44 53-99 155-199 (615)
447 KOG0249|consensus 45.1 3E+02 0.0064 35.8 13.5 93 751-843 154-257 (916)
448 COG1127 Ttg2A ABC-type transpo 45.1 33 0.00071 38.8 5.0 58 71-129 29-88 (263)
449 TIGR00998 8a0101 efflux pump m 45.1 1.8E+02 0.0038 35.2 12.1 60 760-826 80-139 (334)
450 KOG3794|consensus 45.0 17 0.00038 42.9 3.0 8 1347-1354 65-72 (453)
451 cd03247 ABCC_cytochrome_bd The 44.9 16 0.00034 39.8 2.7 25 74-98 27-51 (178)
452 PRK11248 tauB taurine transpor 44.9 15 0.00033 42.6 2.7 25 74-98 26-50 (255)
453 COG1124 DppF ABC-type dipeptid 44.9 13 0.00029 41.9 2.1 38 72-109 29-67 (252)
454 PF01920 Prefoldin_2: Prefoldi 44.7 2.3E+02 0.0051 27.6 10.8 38 814-851 67-104 (106)
455 COG0563 Adk Adenylate kinase a 44.7 18 0.00039 39.5 3.0 28 77-106 2-29 (178)
456 PF07926 TPR_MLP1_2: TPR/MLP1/ 44.7 3.7E+02 0.0081 27.7 14.2 59 787-848 58-116 (132)
457 PF05266 DUF724: Protein of un 44.5 2.2E+02 0.0048 31.4 11.3 48 764-811 114-161 (190)
458 PRK14021 bifunctional shikimat 44.5 38 0.00083 44.0 6.5 82 75-158 6-100 (542)
459 KOG1029|consensus 44.5 1.1E+02 0.0024 39.7 9.8 77 772-848 421-497 (1118)
460 PRK06090 DNA polymerase III su 44.5 1E+02 0.0022 37.1 9.4 94 64-162 12-133 (319)
461 TIGR00150 HI0065_YjeE ATPase, 44.5 40 0.00087 34.9 5.3 36 65-101 13-48 (133)
462 cd03266 ABC_NatA_sodium_export 44.4 16 0.00034 41.2 2.7 26 74-99 30-55 (218)
463 PRK14261 phosphate ABC transpo 44.4 16 0.00034 42.4 2.7 25 74-98 31-55 (253)
464 cd03248 ABCC_TAP TAP, the Tran 44.4 16 0.00035 41.5 2.7 26 74-99 39-64 (226)
465 PF13870 DUF4201: Domain of un 44.4 2.3E+02 0.0051 30.8 11.7 99 748-846 72-175 (177)
466 KOG4657|consensus 44.3 3.3E+02 0.0071 30.4 12.1 38 803-840 87-124 (246)
467 PRK14530 adenylate kinase; Pro 44.3 22 0.00048 40.1 3.8 27 77-103 5-31 (215)
468 cd03256 ABC_PhnC_transporter A 44.3 16 0.00034 41.9 2.7 25 74-98 26-50 (241)
469 PRK05703 flhF flagellar biosyn 44.2 22 0.00048 44.5 4.1 25 75-99 221-246 (424)
470 cd03257 ABC_NikE_OppD_transpor 44.1 16 0.00034 41.6 2.6 25 74-98 30-54 (228)
471 TIGR03743 SXT_TraD conjugative 44.1 43 0.00094 44.2 6.9 55 73-130 174-231 (634)
472 PRK10584 putative ABC transpor 44.1 16 0.00035 41.5 2.8 34 74-107 35-68 (228)
473 KOG0995|consensus 44.0 2.5E+02 0.0055 35.7 12.7 35 1080-1114 486-520 (581)
474 KOG0979|consensus 44.0 2.1E+02 0.0045 38.8 12.5 90 743-832 259-355 (1072)
475 cd03261 ABC_Org_Solvent_Resist 44.0 16 0.00035 41.8 2.7 26 74-99 25-50 (235)
476 PRK05642 DNA replication initi 44.0 86 0.0019 35.9 8.6 90 59-161 28-130 (234)
477 COG5493 Uncharacterized conser 43.9 3.1E+02 0.0068 29.8 11.6 27 808-837 87-113 (231)
478 cd03249 ABC_MTABC3_MDL1_MDL2 M 43.9 17 0.00036 41.7 2.8 26 74-99 28-53 (238)
479 TIGR02211 LolD_lipo_ex lipopro 43.8 16 0.00036 41.2 2.7 26 74-99 30-55 (221)
480 PRK06893 DNA replication initi 43.7 98 0.0021 35.3 9.0 32 77-108 41-75 (229)
481 PRK10771 thiQ thiamine transpo 43.7 16 0.00035 41.7 2.6 26 74-99 24-49 (232)
482 cd03278 ABC_SMC_barmotin Barmo 43.6 19 0.00041 40.0 3.1 29 72-100 19-47 (197)
483 PRK10895 lipopolysaccharide AB 43.6 17 0.00036 41.8 2.8 26 74-99 28-53 (241)
484 PRK09493 glnQ glutamine ABC tr 43.6 16 0.00036 41.8 2.7 25 74-98 26-50 (240)
485 PRK13546 teichoic acids export 43.6 17 0.00036 42.6 2.7 26 74-99 49-74 (264)
486 PF09726 Macoilin: Transmembra 43.5 1.5E+02 0.0033 39.5 11.7 72 757-831 542-613 (697)
487 smart00763 AAA_PrkA PrkA AAA d 43.5 39 0.00086 40.9 5.8 43 59-101 58-105 (361)
488 KOG0995|consensus 43.5 3.6E+02 0.0079 34.4 13.9 59 765-823 292-360 (581)
489 PRK00652 lpxK tetraacyldisacch 43.4 20 0.00044 43.0 3.5 34 81-114 57-91 (325)
490 cd01128 rho_factor Transcripti 43.4 33 0.00072 39.6 5.1 47 75-121 16-68 (249)
491 PF08826 DMPK_coil: DMPK coile 43.4 2.4E+02 0.0051 25.0 10.0 41 773-813 17-57 (61)
492 TIGR03771 anch_rpt_ABC anchore 43.4 17 0.00037 41.3 2.7 26 74-99 5-30 (223)
493 PRK05917 DNA polymerase III su 43.3 1.1E+02 0.0025 36.0 9.5 96 62-162 4-120 (290)
494 cd01428 ADK Adenylate kinase ( 43.2 21 0.00046 39.3 3.4 28 77-104 1-28 (194)
495 cd07673 F-BAR_FCHO2 The F-BAR 43.2 3.3E+02 0.0072 31.9 13.3 39 809-847 157-199 (269)
496 KOG0058|consensus 43.2 28 0.00061 45.3 4.7 58 74-138 493-554 (716)
497 COG1136 SalX ABC-type antimicr 43.1 50 0.0011 37.4 6.3 76 72-154 27-104 (226)
498 PRK14721 flhF flagellar biosyn 43.1 84 0.0018 39.2 8.8 24 74-97 190-214 (420)
499 cd03235 ABC_Metallic_Cations A 43.1 16 0.00034 41.1 2.4 23 74-96 24-46 (213)
500 cd03296 ABC_CysA_sulfate_impor 43.0 17 0.00037 41.7 2.7 23 74-96 27-49 (239)
No 1
>KOG3595|consensus
Probab=100.00 E-value=4.7e-114 Score=1178.45 Aligned_cols=974 Identities=36% Similarity=0.594 Sum_probs=819.7
Q ss_pred CCccccCCHHHHHHHHHHHHHHHhccCCCCCcceeehHHHHHHHHHHHHHhcCCCCceEEEecCCchhhhHHHHHHHhcC
Q psy4724 21 LVYDEIDNLDLLTEKINQYIVDYNTQNSNKPIDIVTFLYIIQHISRLCRILQQPKGHAMLITIGGSGAAEVTKLATFMNE 100 (1650)
Q Consensus 21 ~~Y~~~~~~~~l~~~l~~~l~~yN~~~~~~~m~lVlF~~ai~Hv~rI~Ril~~p~G~alLvGvgGSGrqSLtrLAafi~~ 100 (1650)
+.|+++.+++.++.++..++..|| ......|++|||.+|++|++||+|||++|+||++|||+||||||||+|+++|+++
T Consensus 412 ~~y~~~~~~~~l~~~~~~~l~~~~-~~~~~~~~lvlf~~~~~h~~ri~ril~~~~g~~llvgv~g~gkqsl~r~~~~~~~ 490 (1395)
T KOG3595|consen 412 KIYEEVLSVELLRGVLEAYLKQFN-IEEIRPMHLVLFRDAIEHVLRIDRILRQPRGHALLVGVGGSGKQSLTRLAAFING 490 (1395)
T ss_pred cccCchHhHHHHHHHHHHHHHHHh-hhccCCCceeeeHHHhhhhhhhHHHhcCCCccEEEeecCCCCcccHHHHHHhhcc
Confidence 799999999999999999999999 3467889999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEEcccCCcchhHHHHHHHHHHhccCCCCCEEEEEecCCcCchhhHHHHHHHHhhhhhccccccccccCCCCCcc
Q psy4724 101 YVLFEIEILKTYGLTDWRDDLCRLMKKSGGKDAKPMTFLFSDTQIQNEVFVEHINMLLNTARKRYNMDLTKSYGVCPSMS 180 (1650)
Q Consensus 101 ~~~fqIeitk~Yg~~~f~eDLk~l~~~~g~~~~k~~vFl~tD~qI~~E~fLedIN~lL~tge~~~~~~vp~l~~~v~~l~ 180 (1650)
|.+|||+++++|+..+|++||+.++++|| .+|+.+||+++|+||.+|+|||++|++|++|| +||+|+.
T Consensus 491 ~~~fq~~~~~~y~~~~~~~dl~~~~r~~g-~~~~~~~f~~~~~~i~~e~fle~ln~ll~~ge------vp~lf~~----- 558 (1395)
T KOG3595|consen 491 LSVFQIEITRSYNIEDFREDLKAILRKAG-LKNKETVFILTDSQIKDESFLEDLNNLLASGE------VPNLFTG----- 558 (1395)
T ss_pred ccceeeeccccCcHHHHHHHHHHHHHHhc-cCCCceEEeechHHHHHHHHHHHHHHHHhCCC------CCCccch-----
Confidence 99999999999999999999999999999 89999999999999999999999999999999 9999999
Q ss_pred chhhhhhhhcCcchHHhhhchhHHHHHHHHHHHhhhhccCCCCccchhHhHHHHHHHHHHHHhcCCccchhhHHHhhHHH
Q psy4724 181 IVHHLEDLNASPLVYDEIDNLDLLTEKINQYIVDYNTQNSNKPIDIVTFLYIIQHISRLCRILQQPKGHAMLITIGTYRV 260 (1650)
Q Consensus 181 ~~~~Le~~~~~~~v~~E~~~~~~l~e~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~f~ 260 (1650)
+|. +.+........ +....... + +.. +.+.||+
T Consensus 559 ---------------de~---~~~~~~~~~~~----~~~~~~~~-~-s~e-----------------------~~~~~f~ 591 (1395)
T KOG3595|consen 559 ---------------DEL---DEIKMELAGEM----GEEAKLIL-D-SRE-----------------------NLYLFFI 591 (1395)
T ss_pred ---------------HHH---HHHHHHHHHHh----hhhccccC-c-cHH-----------------------HHHHHHH
Confidence 777 33222111111 01100111 1 222 6788999
Q ss_pred HHHhhhccchhhhcccchhhh---hhcccccccccceeEeeeccccCCCchhHHHHHHHHHHHHHhhcCCCCcHHHHHHH
Q psy4724 261 ERKIALGRVHIIRTEKEIDDA---RMMYIPVSKHSSVLFFCCAELSNIDPMYQYSLNWFINLYVQSIEGSEKTDQLDKRL 337 (1650)
Q Consensus 261 ~~~~~l~~lhivlt~s~I~~~---R~~y~PvA~r~S~Ly~~~~~Ls~id~mYqfSl~~F~~lf~~~l~~s~~~~~l~~Rl 337 (1650)
.+++ .++|+++++++++++ |.+-+| ++++||+ ++||. . |+.+++..
T Consensus 592 ~~~~--~~l~~vl~~~~~g~~~~~r~~~~p------al~~~~~------------i~w~~-----~----w~~~al~~-- 640 (1395)
T KOG3595|consen 592 FRVR--RNLHVVLSVSPVGDAFRLRARKFP------ALVNRCT------------IDWFD-----S----WPTEALLS-- 640 (1395)
T ss_pred HHHH--HhcceeEEeCchhhHHHHHHHhCh------hhhccch------------hhhcc-----c----CCHHHHHH--
Confidence 9999 999999999999998 777888 9999999 99997 3 99999887
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhhchhhhhHhhHHHHhhhcchhhhhhchhhhHHHHHHHHHhhhhcCCCC
Q psy4724 338 KILMNHFTYSIYKNICRSLFEDHKLVFSFVLCTGQGEIAKSYIDEGLKKGLWIVLQNCHVAKSWMKELERICAEVIVPAN 417 (1650)
Q Consensus 338 ~~l~~~lt~~vy~~v~r~Lfe~~kllfs~lL~~~~~~~a~~~i~~~~~~~~w~~l~~~~~~~~~~~~l~~~~~~~~~~~~ 417 (1650)
+.+.+.... .+.+ ...+.+. +..+.. .++..+. .
T Consensus 641 --v~~~~l~~~------------~~~~-----------------~~~~~~~---i~~~~~--~~~~~~~----------~ 674 (1395)
T KOG3595|consen 641 --VAEEFLASQ------------DILS-----------------PSEKRGA---ISLTMI--LFHETVL----------E 674 (1395)
T ss_pred --HHHHHHhhh------------cCCC-----------------cccccch---hhhhhh--hhhhhHH----------H
Confidence 555542110 0000 0000000 111110 0111111 1
Q ss_pred chHHHHHHhccCCCCCCCchhhccchhhhccCchhhHHHHhhhhcCCCCCCccccccccchhHHHHHHHHHhhHHHHHHH
Q psy4724 418 THQEFRLWLTSYPSTTFPVSVLENGIKMIIEPPKGIKNNLLRSYTNDPINSDDFYNDSKNVAAWHKLLFSLCLFHAVVQE 497 (1650)
Q Consensus 418 ~~~~f~~~l~~~~~~~~p~~~le~~lk~l~e~~~~~k~~ll~~~~~d~~~~~~~~~~~~~~~~f~kLL~~l~~~~~~~~~ 497 (1650)
....+.....++.+ .+|.++++. + ..|+ .++..++ ..+...
T Consensus 675 ~~~~~~~~~~r~~~-~tp~~~l~~-----i---~~f~-~ll~~k~-----------------------------~~~~~~ 715 (1395)
T KOG3595|consen 675 SFASYFDRLSRHNY-VTPTSYLEF-----I---GTFK-KLLKEKR-----------------------------SEVRLR 715 (1395)
T ss_pred HhHHHHHhcCceee-cCchhHHHH-----H---HHHH-HHHHHHH-----------------------------HHHHHH
Confidence 22333444555666 777777776 3 4455 4444332 122222
Q ss_pred HHHhCCCCCCCCcccccchhHHHHHHHHHHHhccCCCChhhhhhhhhhHHHhhhhccCCccccccccchHHHHHHHHHHH
Q psy4724 498 RKQYGPLGWNIPYEFNLSDLNISMKQLQMFLNDYTTIPFDALIYLTVDYKYTSQMRQKNPFTLTISRTTQIIEDFMLCIK 577 (1650)
Q Consensus 498 r~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~ip~~~l~~l~~~l~~~~~~~~~~~~~~~i~~g~~~~e~l~~~i~ 577 (1650)
+. ++..|++++..+..++..+..++. .+.+.+..+...+.. ....+..+..+.+.....+.
T Consensus 716 ~~---------r~~~gl~kl~~a~~~v~~l~~~l~--------~~~~el~~~~~~a~~--~l~~i~~~~~~~e~~k~~v~ 776 (1395)
T KOG3595|consen 716 KL---------RLELGLDKLKEAGEQVAGLQKELA--------ALQPELQVKSKEAND--VLAKILKETQAAEAQKEAVL 776 (1395)
T ss_pred HH---------HHHhhhHHhhHHHHHHHHHHHHHH--------HhhHHHHHHhHHHHH--HHHHHHhhHHHHHHHHHHHH
Confidence 22 556678888888888877766654 445554444331110 01111111111111111111
Q ss_pred hcceehhccchhhHHHHHHHHHHHHHhcCCCCcchHHHhhhhcCCCCCcccccc---cchhhhhhcCCcccccccccccc
Q psy4724 578 KGLWIVLQNCHVAKSWMKELERICAEVIVPANTHQEFRLWLTSYPSTTFPVSVL---ENGIKMIIEPPKGIKNNLFRSYT 654 (1650)
Q Consensus 578 ~g~wvllqn~~la~~~~~e~e~~l~~~~~p~~~~a~~~Lw~t~~~~~~~pi~~l---~~~vk~v~E~~~glk~~l~~~~~ 654 (1650)
...-........+.+.+.+++++++++. |+++.|..++ .|+++.++.+++++ |.+|+.+||..+-+... +
T Consensus 777 ~~e~~~~~~~~~~~~~k~~v~~~l~~a~-P~leeA~aal-~ti~k~~l~~lks~~~PP~~Vk~~meavciLlg~----~- 849 (1395)
T KOG3595|consen 777 EDEKKAQEKAGLIQAQKAEVEEDLEEAE-PALEEASAAL-STIKKADLSELKSMKNPPHAVKLVMEAVCILLGR----L- 849 (1395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh-HHHHHHHHHH-hcCChhhHHHHHhcCCCcHHHHHHHHHHHHHhcc----c-
Confidence 1000111122356778889999999998 9999999999 99999999999999 88999999954433221 0
Q ss_pred CCCCCCcchHhhhhhhhhhHHHHHHHhhhhHHHHHHHhhCCCCCCCCccCCcccHHHHHHHHH-hhhcCCCCCchh--hH
Q psy4724 655 NDPINSDDFYNDSKNVAAWHKLLFSLCLFHAVVQERKQYGPLGWNIPYEFNLSDLNISMKQLQ-MFLNDYTTIPFD--AL 731 (1650)
Q Consensus 655 ~~~~~~~~~w~~~k~~l~~~~~l~~L~~fHavv~ER~kf~~lG~ni~y~Fn~sDl~~~~~~l~-~~l~~~~~~p~~--~l 731 (1650)
...++|...+.++....|+..+.. |++ .+++.. +.+.+. .|+.+++|.|.. ..
T Consensus 850 ----~~~~w~~~~~~~~~~~~fl~~l~~----------~~~--~~i~~~--------~~k~i~~~~~~~p~f~~~~v~~~ 905 (1395)
T KOG3595|consen 850 ----SSTDWKNISKLLLSDDFFLIILRE----------FDK--DEIPEE--------IMKLIKKFYFQNPDFVPEKVNRA 905 (1395)
T ss_pred ----cCCChHHHHHHhhcccHHHHHhhc----------Ccc--ccChHH--------HHHHHHHhhcCCccCCHHHHHhh
Confidence 123456666666666668888888 888 888888 999995 799999999972 22
Q ss_pred hHhhcCccchhhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4724 732 IYLTASIPFQVLAMEVYDRVIKIVGPKKAKLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQI 811 (1650)
Q Consensus 732 ~~~~~s~a~Wv~A~~~Y~~v~~~v~P~~~~l~~~e~~l~~~~~~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~ 811 (1650)
+.+.++.+.||.|+..|+++++.|+|++..++.++..+..+++.+++++.++++++++++.++++|+....+++.++.++
T Consensus 906 s~a~~~l~~wv~a~~~~~kv~~~v~p~~~~~~~~e~~~~~~~~~l~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 985 (1395)
T KOG3595|consen 906 SLACEGLCLWVIAIDKYSKVLKVVEPKRQELARLEAELKAAMKELEEKSAELQDLEEKLQRLKDEYEQLIAEKQELEEDM 985 (1395)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22334444999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhchhhccHHHHHHHHHHHHhhchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhcCCCCCC
Q psy4724 812 ELCKQKLERAEKLIGGLGGEKTRWSEASANLSKALVNCIGDILICAGIITYLGAFTVDFRNDLIEQWKSLSSQEQMPFTL 891 (1650)
Q Consensus 812 ~~~~~rl~ra~~Li~~L~~E~~rW~~~~~~~~~~~~~l~Gd~ll~aa~i~Y~G~f~~~~R~~l~~~w~~~~~~~~i~~~~ 891 (1650)
..|+.++.||.+|+.+|++|+.||...++.+..+...++||+|++|++++|+|+|+..+|..++..|...+....+ +.+
T Consensus 986 ~~~~~k~~~a~~Li~~Ls~e~~rW~~~~~~~~~~~~~l~gd~ll~~~~~~y~g~~~~~~r~~~~~~~~~~~~~~~~-~~~ 1064 (1395)
T KOG3595|consen 986 DACELKLLRAEELIQGLSGEKERWSETSEQFSKQYSRLVGDVLLSSAFVAYLGAFDQLYRQSLLRLWESLCTQLKI-VLS 1064 (1395)
T ss_pred HHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhhhhHHHHhhhhhhhhccccCHHHHHHHHHHhHHhcCcccc-ccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999 999
Q ss_pred CCccccccCCHHHHHHHHhCCCCCCchhhhhhHHhhcCCCcccccCchhHHHHHHHHhccCC-cEEEecCChhHHHHHHH
Q psy4724 892 SFSMITTLGDAVKIRSWNINGLPVDNFSIENGIILFNSNKWPLLIDPQGQANKWLKNVEKGN-LSVVKLTDATLLRTLER 970 (1650)
Q Consensus 892 ~~~~~~~l~~~~~~~~w~~~gLP~D~~s~enaii~~~~~r~PLlIDPq~qa~~wik~~~~~~-l~v~~~~~~~~~~~le~ 970 (1650)
++++..+++++.++..|...|+|.|.+|+|||++++++.|||++||||+|++.||+++++.+ +.++++++..|++.+|+
T Consensus 1065 ~~~~~~~l~~~~~~~~w~~~~lp~~~~s~en~~i~~~~~~~~l~id~q~q~~~~i~~~~~~~~~~~i~~~~~~~l~~le~ 1144 (1395)
T KOG3595|consen 1065 NFSLISMLVDPTEILNWNIRGLPADDLSIENGIIITNSNRWPLIIDPQGQANEWIKNKESENKLQVISFNEKEFLRQLEN 1144 (1395)
T ss_pred ccchHhhcCchHhhcchhhccCcccccchhHHHHHhccCCCceeecchhhhhHhHhhhhhhcccceeeccchhHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999866 99999999999999999
Q ss_pred HHHcCCeEEEecccccccccchHHHhHHHHhhcCeEEEEecCeeeeecCCeeEEEEeCCCCCCCCcccccceEEEEeeeC
Q psy4724 971 AIRTGTAVLLENIQETIDSSLEPVLLKSYYKIQNQLIMTLNNKEIEYNIKFRLYITTRLKNPHYIPEILTKITLINFMIT 1050 (1650)
Q Consensus 971 ai~~G~~vlie~v~e~~dp~l~p~L~~~~~~~~~~~~i~ig~~~i~~~~~FrL~l~Tk~~np~~~pe~~~~~tvinf~vt 1050 (1650)
|+++|.|++++|+.|.+||.++|++.+.+++.||...+++||++++++++|++|++|+++||||.|++++++++|||++|
T Consensus 1145 a~~~g~~il~~~~~e~~d~~l~~ll~~~~~~~g~~~~~~~gd~~~~~~~~f~~~~~t~~~~~~~~p~~~~~~~~v~f~~t 1224 (1395)
T KOG3595|consen 1145 ALRFGEPVLIEDVNEELDPALEPLLLKETFKQGGRVLIKLGDKEIDLNPDFRLYITTKLRNPHYLPELSARVTLVNFTVT 1224 (1395)
T ss_pred HhccCCceeccchhhhhchhhhhhcccceeeccCeEeeecCceeeecCCCeeEEEeecccCcccChhhhhceeEEEeEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhHHHHHHHHHHH
Q psy4724 1051 PQGLQNQLLGIVVAKEKPDLETKKNELIIESANNKKILKETEDKILEVLSSSQGNILEDESAVQILTSSKVLSAEITAKQ 1130 (1650)
Q Consensus 1051 ~~gLe~qlL~~vv~~e~peLe~~~~~l~~~~~~~k~~L~~lEd~lL~~L~~s~g~iLdd~~li~~L~~sK~~~~~i~~~l 1130 (1650)
..|+++|+|+.++..|+|+++.++..++...++.+.+++++|+.+|..|+.|+|++++|++++.+|+.+|.++. |++++
T Consensus 1225 ~~~l~~qll~~v~~~e~~~~~~~~~~l~~~~~~~~~~lk~le~~lL~~l~~s~~~~l~~~~~~~~l~~~K~~~~-i~~k~ 1303 (1395)
T KOG3595|consen 1225 PSGLEDQLLGSVVAIERPDLEEERSDLIKLQAEIKRQLKELEDRLLERLSSSEGNILEDDELIVTLESSKVEAA-IKEKL 1303 (1395)
T ss_pred hhHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccccHHHHHHHHHHHHHHH-HHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhcCCcccccCHHHHHHHHHHhhhcccCcccHHHHHHHHHHHHHHHH
Q psy4724 1131 EISSRTEKEIDDARMMYIPVSKHSSVLFFCCAELSNIDPMYQYSLNWFINLYVQSIEGSEKTDQLDKRLKILMNHFTYSI 1210 (1650)
Q Consensus 1131 ~~~~~~~~~i~~~r~~y~pvA~~~s~lyf~l~~L~~i~~mYq~Sl~~f~~lf~~~i~~~~~~~~~~~r~~~l~~~~t~~~ 1210 (1650)
.+++.++.+|+++|+.|+|+|.|++.+||++++|+.++|||||||.||+.+|..++.. +++..+|+.+|++++|+.+
T Consensus 1304 ~e~~~~e~~i~~~r~~y~p~a~~~~~l~~~~~~l~~i~~myq~sl~~f~~~f~~~~~~---~~~~~~r~~~l~~~~~~~v 1380 (1395)
T KOG3595|consen 1304 EEAEETEKEIDAAREQYRPLAIHSSILYFSISDLANIHPMYQYSLKWFLNLFHVVIER---SESLSKRLANLIDSLTYSV 1380 (1395)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHhHhhhheehhhccccChHHHHHHHHHHHHHHHHHhc---cccHHHHHHHHHHHhHHHH
Confidence 9999999999999999999999999999999999999999999999999999999998 6789999999999999999
Q ss_pred HHHHhhhccccCcch
Q psy4724 1211 YKNICRSLFEDHKLV 1225 (1650)
Q Consensus 1211 y~~v~r~Lfe~~kll 1225 (1650)
|.|+|||||++||++
T Consensus 1381 ~~~~~r~l~e~dkl~ 1395 (1395)
T KOG3595|consen 1381 YCNVSRGLFEKDKLL 1395 (1395)
T ss_pred HHHHHHHhhhhcccC
Confidence 999999999999985
No 2
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=100.00 E-value=2.4e-57 Score=554.54 Aligned_cols=930 Identities=13% Similarity=0.080 Sum_probs=685.4
Q ss_pred CHHHHHHHHHHHHHHHhccCCCCCcceeehHHHHHHHHHHHHHhcCCCCceEEEecCCchhhhHHHHHHHhcCCceEEEE
Q psy4724 28 NLDLLTEKINQYIVDYNTQNSNKPIDIVTFLYIIQHISRLCRILQQPKGHAMLITIGGSGAAEVTKLATFMNEYVLFEIE 107 (1650)
Q Consensus 28 ~~~~l~~~l~~~l~~yN~~~~~~~m~lVlF~~ai~Hv~rI~Ril~~p~G~alLvGvgGSGrqSLtrLAafi~~~~~fqIe 107 (1650)
+...+...+++.-..+-. +.-...+|.+++|+.|+.|+.|+|.+.+||+||.|+-|.|+.-+++.+||+++..++||.
T Consensus 1791 ~k~dl~~fvEe~~K~F~s--shl~v~~V~~~~~l~HiLr~~R~l~~vggh~~l~g~~~~g~~~~~efvcwlN~~~m~e~~ 1868 (3164)
T COG5245 1791 LKKDLAVFVEEVRKIFGS--SHLDVEAVAYKDALLHILRSRRGLLVVGGHGVLKGVLIRGACDAREFVCWLNPRNMREIF 1868 (3164)
T ss_pred hhhhHHHHHHHHHHHhcc--cCCCCceeeeHHHHHHHHHHHHHHHHhccchhhhhhhhhhhHHHHHHHHHhCccchhhhh
Confidence 345566677776666653 234467999999999999999999999999999999999999999999999999999999
Q ss_pred EcccCCcchhHHHHHHHHHHhccCCCCCEEEEEecCCcCchhhHHHHHHHHhhhhhccccccccccCCCCCccchhhhhh
Q psy4724 108 ILKTYGLTDWRDDLCRLMKKSGGKDAKPMTFLFSDTQIQNEVFVEHINMLLNTARKRYNMDLTKSYGVCPSMSIVHHLED 187 (1650)
Q Consensus 108 itk~Yg~~~f~eDLk~l~~~~g~~~~k~~vFl~tD~qI~~E~fLedIN~lL~tge~~~~~~vp~l~~~v~~l~~~~~Le~ 187 (1650)
..++|.+.||++.||.....|| +.|.+.|..+.|+-+...+|||++|+||...+ +|++|..
T Consensus 1869 ~hr~~~~~Df~d~lk~~~~~~~-~~~~r~Cl~I~Esi~~es~fLe~~N~LL~n~~------~~~lf~g------------ 1929 (3164)
T COG5245 1869 GHRDELTGDFRDSLKVQDLRRN-IHGGRECLFIFESIPVESSFLEDFNPLLDNNR------FLCLFSG------------ 1929 (3164)
T ss_pred cccccchhhHHHHHHHHHHhcc-ccCCceEEEEecCCccchHHHHHhhhhhhccc------cchhccc------------
Confidence 9999999999999999999999 89999999999999999999999999999988 9999999
Q ss_pred hhcCcchHHhhhchhHHHHHHHHHHHhhhhccCCCCccchhHhHHHHHHHHHHHHhcCCccchhhHHHhhHHHHHHhhhc
Q psy4724 188 LNASPLVYDEIDNLDLLTEKINQYIVDYNTQNSNKPIDIVTFLYIIQHISRLCRILQQPKGHAMLITIGTYRVERKIALG 267 (1650)
Q Consensus 188 ~~~~~~v~~E~~~~~~l~e~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~f~~~~~~l~ 267 (1650)
+|+ ..|.+.+|..+ .-.+...+ +.. +++.+|+-.+. +
T Consensus 1930 --------ne~---~~I~~nlr~~~-----es~~L~~d--Te~-----------------------tlt~vFl~~~~--~ 1966 (3164)
T COG5245 1930 --------NER---IRIPENLRFVF-----ESTSLEKD--TEA-----------------------TLTRVFLVYME--E 1966 (3164)
T ss_pred --------hhH---HHHHHHHHhhh-----hccccccC--CHH-----------------------HHHHHHHHHHH--h
Confidence 898 78888887766 33222111 222 67888888888 9
Q ss_pred cchhh--hcccchhhh-hhcccccccccceeEeeeccccCCCchhHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHH
Q psy4724 268 RVHII--RTEKEIDDA-RMMYIPVSKHSSVLFFCCAELSNIDPMYQYSLNWFINLYVQSIEGSEKTDQLDKRLKILMNHF 344 (1650)
Q Consensus 268 ~lhiv--lt~s~I~~~-R~~y~PvA~r~S~Ly~~~~~Ls~id~mYqfSl~~F~~lf~~~l~~s~~~~~l~~Rl~~l~~~l 344 (1650)
|+|+| .|.+.-... -.-..| +|++-|. +||+. . |....... +++..
T Consensus 1967 Nl~vVFs~c~s~d~~~~a~i~sp------al~nrc~------------id~~~-----~----wdt~~msq----~An~V 2015 (3164)
T COG5245 1967 NLPVVFSACCSQDTSVLAGIRSP------ALKNRCF------------IDFKK-----L----WDTEEMSQ----YANSV 2015 (3164)
T ss_pred cCCeEEEEecCCCchHhhccCCH------HHhhhhh------------hhhhh-----h----ccHHHHHH----HHhhh
Confidence 99986 333322221 233345 7777777 77765 2 55443333 22211
Q ss_pred HHHHHHHHhhhhhhhhhHHHHHHhhhchhhhhHhhHHHHhhhcchhhhhhchhhhHHHHHHHHHhhhhcCCCCchHHHHH
Q psy4724 345 TYSIYKNICRSLFEDHKLVFSFVLCTGQGEIAKSYIDEGLKKGLWIVLQNCHVAKSWMKELERICAEVIVPANTHQEFRL 424 (1650)
Q Consensus 345 t~~vy~~v~r~Lfe~~kllfs~lL~~~~~~~a~~~i~~~~~~~~w~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~f~~ 424 (1650)
.. .++.++.- ..+..++.-+ ..... .+.......+. ....|
T Consensus 2016 ~~-----~s~~~~~v------------------~~in~el~~~-----kg~~i-------~~~~~~~~vv~--~~r~f-- 2056 (3164)
T COG5245 2016 ET-----LSRDGGRV------------------FFINGELGVG-----KGALI-------SEVFGDDAVVI--EGRGF-- 2056 (3164)
T ss_pred hh-----eeecCCcc------------------cccccccccC-----cchhh-------HHHHhhhheee--cccce--
Confidence 00 00110000 0000000000 00000 00000000000 00000
Q ss_pred HhccCCCCCCCchhhccchhhhccCchhhHHHHhhhhcCCCCCCccccccccchhHHHHHHHHHhhH--HHHHHHHHHhC
Q psy4724 425 WLTSYPSTTFPVSVLENGIKMIIEPPKGIKNNLLRSYTNDPINSDDFYNDSKNVAAWHKLLFSLCLF--HAVVQERKQYG 502 (1650)
Q Consensus 425 ~l~~~~~~~~p~~~le~~lk~l~e~~~~~k~~ll~~~~~d~~~~~~~~~~~~~~~~f~kLL~~l~~~--~~~~~~r~~~~ 502 (1650)
|.....- ..|.+-+.. + .+-+.+..+|-. .++.....
T Consensus 2057 ~~~m~~G-s~~~s~~~f-----I--------------------------------~gl~~~~~~~~~~~~~l~~~~~--- 2095 (3164)
T COG5245 2057 EISMIEG-SLGESKIKF-----I--------------------------------GGLKVYDARCVIYIEELDCTNV--- 2095 (3164)
T ss_pred EEEeeec-cCccCccee-----e--------------------------------cchHHHHHHHHHHHHHhhhHHH---
Confidence 0000000 011110000 0 111111111111 11111111
Q ss_pred CCCCCCCcccccchhHHHHHHHHHHHhccCCCChhhhhhhhhhHHHhhhhccCCccccccccchHHHHHHHHHHHhccee
Q psy4724 503 PLGWNIPYEFNLSDLNISMKQLQMFLNDYTTIPFDALIYLTVDYKYTSQMRQKNPFTLTISRTTQIIEDFMLCIKKGLWI 582 (1650)
Q Consensus 503 ~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~ip~~~l~~l~~~l~~~~~~~~~~~~~~~i~~g~~~~e~l~~~i~~g~wv 582 (1650)
....|+.++.+....+.++.+.+... ...+..+.+.+.. ....+-+.+.+.+.-.....+-.-.
T Consensus 2096 ------~l~~g~~K~nE~~~g~~elke~Ls~~--------~~il~~keK~a~d--~L~~~~~er~e~E~K~v~~e~~~~~ 2159 (3164)
T COG5245 2096 ------NLVEGVRKYNEYGRGMGELKEQLSNT--------VVILGVKEKNADD--ALSGTPGERLEREVKSVFVEAPRDM 2159 (3164)
T ss_pred ------HHHHHHHHHHHHhhhHHHHHHHHhcc--------eeeeeecccccch--hhhcChhhHHHHHHHHHHHHhHHHH
Confidence 12233344444433333333322200 0000011000000 0001111111222111111111111
Q ss_pred hhccchhhHHHHHHHHHHHHHhcCCCCcchHHHhhhhcCCCCCcccccc---cchhhhhhcCCccccccccccccCCCCC
Q psy4724 583 VLQNCHVAKSWMKELERICAEVIVPANTHQEFRLWLTSYPSTTFPVSVL---ENGIKMIIEPPKGIKNNLFRSYTNDPIN 659 (1650)
Q Consensus 583 llqn~~la~~~~~e~e~~l~~~~~p~~~~a~~~Lw~t~~~~~~~pi~~l---~~~vk~v~E~~~glk~~l~~~~~~~~~~ 659 (1650)
+.....+.-..+....+....+. |+..+|...+ ..+++.++.+|+++ |.+++++||..+.+.- |
T Consensus 2160 l~~~ee~vrkrk~svmk~~s~~k-PaVLEA~~~V-~~ikka~L~EIrs~irpp~~l~i~me~Vc~LLg-----f------ 2226 (3164)
T COG5245 2160 LFLLEEEVRKRKGSVMKFKSSKK-PAVLEAVLFV-YKIKKASLREIRSFIRPPGDLCIEMEDVCDLLG-----F------ 2226 (3164)
T ss_pred HHHhHHHHHHHhhhhHhhhhccc-cHHHHHHHHH-HHhhHHHHHHHHHhcCCcccceeeHHHHHHHhc-----c------
Confidence 11111233334444555555555 7777888888 88999999999999 8899999996554320 0
Q ss_pred CcchHhhhhhhhhhHHHHHHHhhhhHHHHHHHhhCCCCCCCCccCCcccHHHHHHHHH-hhhcCCCCCchhhHhHhhcCc
Q psy4724 660 SDDFYNDSKNVAAWHKLLFSLCLFHAVVQERKQYGPLGWNIPYEFNLSDLNISMKQLQ-MFLNDYTTIPFDALIYLTASI 738 (1650)
Q Consensus 660 ~~~~w~~~k~~l~~~~~l~~L~~fHavv~ER~kf~~lG~ni~y~Fn~sDl~~~~~~l~-~~l~~~~~~p~~~l~~~~~s~ 738 (1650)
.-..|...++.+...+|+..+.. |+. .-+| |++ .-.+++ .|+.+|.|+.. .+.++|.
T Consensus 2227 ~a~~w~~~qQ~LrrDDfi~~i~~----------y~~-----e~e~---~~~-~Rr~~E~~~~Sdp~ft~~---~lnRask 2284 (3164)
T COG5245 2227 EAKIWFGEQQSLRRDDFIRIIGK----------YPD-----EIEF---DLE-ARRFREARECSDPSFTGS---ILNRASK 2284 (3164)
T ss_pred hhHHhhhHHHHhhhhhHHHHhcc----------CCc-----eeec---CHH-HHHHHHHHhcCCCcchhH---Hhhhhhh
Confidence 11238888888887788777666 432 2222 222 333444 78999999988 7888888
Q ss_pred c-----chhhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4724 739 P-----FQVLAMEVYDRVIKIVGPKKAKLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIEL 813 (1650)
Q Consensus 739 a-----~Wv~A~~~Y~~v~~~v~P~~~~l~~~e~~l~~~~~~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~ 813 (1650)
| .|+.+.++|..|...+.|++++....+-+...+++.|......-+++++.+..++..|.-...+.+..+.++..
T Consensus 2285 acGPl~~Wl~~~cn~skvLE~~~plr~E~kRI~~E~~~~e~~L~~~~~~s~dl~~~~l~~r~~YSl~I~~Vh~~~~~md~ 2364 (3164)
T COG5245 2285 ACGPLKRWLVRECNRSKVLEVKIPLREEEKRIDGEAFLVEDRLTLGKGLSSDLMTFKLRRRSYYSLDILRVHGKIADMDT 2364 (3164)
T ss_pred ccCcHHHHHHHHhhHHHhhhhcccchhHHHhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhh
Confidence 8 99999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhchhhccHHHHHHHHHHHHhhchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhcCCCCCC--
Q psy4724 814 CKQKLERAEKLIGGLGGEKTRWSEASANLSKALVNCIGDILICAGIITYLGAFTVDFRNDLIEQWKSLSSQEQMPFTL-- 891 (1650)
Q Consensus 814 ~~~rl~ra~~Li~~L~~E~~rW~~~~~~~~~~~~~l~Gd~ll~aa~i~Y~G~f~~~~R~~l~~~w~~~~~~~~i~~~~-- 891 (1650)
.+..+.|...++..|..|+.+|.....++.+....|+||++.+|++.+|.|-.+...|..++......+.. +.|.+.
T Consensus 2365 v~~~~~rsi~v~~~l~~e~~ew~g~~~~~pk~m~eL~g~~~~sS~~~~y~g~l~~~~Ra~~~~~~~~~Is~-~F~~k~~~ 2443 (3164)
T COG5245 2365 VHKDVLRSIFVSEILINEDSEWGGVFSEVPKLMVELDGDGHPSSCLHPYIGTLGFLCRAIEFGMSFIRISK-EFRDKEIR 2443 (3164)
T ss_pred HHHhhhhceeeeeecceecccccchHhhccHHHHHhhcCCcchheeeeeeccccHHHHHHHHhhhHHHhcc-cCchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998877776653 444443
Q ss_pred CCccccccCCHHHHHHHHhCCCCCCchhhhhhHHhhcCC-CcccccCchhHHHHHHHHhccCC-cEEEecCChhHHHHHH
Q psy4724 892 SFSMITTLGDAVKIRSWNINGLPVDNFSIENGIILFNSN-KWPLLIDPQGQANKWLKNVEKGN-LSVVKLTDATLLRTLE 969 (1650)
Q Consensus 892 ~~~~~~~l~~~~~~~~w~~~gLP~D~~s~enaii~~~~~-r~PLlIDPq~qa~~wik~~~~~~-l~v~~~~~~~~~~~le 969 (1650)
...+.+.+....+-..|-.+ ..+++.||.-|+.... -.|+++||..+..+-++++++.+ -...++....|...|+
T Consensus 2444 ~r~fI~~~Vq~~e~~K~~~c---~tDy~lEN~~i~~~~qd~~~~L~dpss~ivt~~~~~y~~kkail~sf~e~~f~~~L~ 2520 (3164)
T COG5245 2444 RRQFITEGVQKIEDFKEEAC---STDYGLENSRIRKDLQDLTAVLNDPSSKIVTSQRQMYDEKKAILGSFREMEFAFGLS 2520 (3164)
T ss_pred HHHHHHHHHHHHHHHHHHHh---cchhcchhhHHHhhccccHhHhcCcHHHHHHhhHHHhccchhhhhhhhhHHHHHHHH
Confidence 34455555555666677655 5678999998887765 57899999999999999999976 6667999999999999
Q ss_pred HHHHcCCeEEEecccccccccchHHHhHHHHhhcCeEEEEecCeeeeecCCeeEEEEeCCCCCCCCcccccceEEEEeee
Q psy4724 970 RAIRTGTAVLLENIQETIDSSLEPVLLKSYYKIQNQLIMTLNNKEIEYNIKFRLYITTRLKNPHYIPEILTKITLINFMI 1049 (1650)
Q Consensus 970 ~ai~~G~~vlie~v~e~~dp~l~p~L~~~~~~~~~~~~i~ig~~~i~~~~~FrL~l~Tk~~np~~~pe~~~~~tvinf~v 1049 (1650)
+|+++|..++|.|. |-+||++.|++.+.+...+++..+.||+.+|+.+-.|.+|+.+-.+.-..+.-...++.+|||+.
T Consensus 2521 ~a~r~gs~~iI~da-E~~d~~i~rlIk~ef~s~~~eV~v~i~~~eI~~S~~~~vf~~se~~Sgdm~~~~~k~l~~v~Fvs 2599 (3164)
T COG5245 2521 QARREGSDKIIGDA-EALDEEIGRLIKEEFKSNLSEVKVMINPPEIVRSTVEAVFWLSEGRSGDMGSIEWKQLIQVMFVS 2599 (3164)
T ss_pred HHHHhccceEecch-hhhhhhhhhhhhHHHhcCCceEEEEECCCeeEEecceeEEEEeecCCCchhHHHHHHhHhhheeh
Confidence 99999999999996 99999999999999999999999999999999999999999999887676677788999999999
Q ss_pred ChhhHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhHHHHHHHHHH
Q psy4724 1050 TPQGLQNQLLGIVVAKEKPDLETKKNELIIESANNKKILKETEDKILEVLSSSQGNILEDESAVQILTSSKVLSAEITAK 1129 (1650)
Q Consensus 1050 t~~gLe~qlL~~vv~~e~peLe~~~~~l~~~~~~~k~~L~~lEd~lL~~L~~s~g~iLdd~~li~~L~~sK~~~~~i~~~ 1129 (1650)
...|+|.|++..++..+.|++..++..|....+..+.+|..|+..+|..|.+|+||+++++++..+|.+.|+...+|.++
T Consensus 2600 ~v~~~ET~i~d~~~~~~~~~lf~~~~~l~~lk~~~~l~L~~L~~~ll~~L~~s~~nm~~tDEI~vll~NlKk~~~~Ie~~ 2679 (3164)
T COG5245 2600 KVLGCETEIPDALEKLVSGPLFVHEKALNALKACGSLFLWVLARYLLAKLMLSISNMEQTDEIAVLLHNLKKSRKEIEEE 2679 (3164)
T ss_pred hhhhhhhhhhHHHHhhhccchhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhcCCcccccCHHHHHHHHHHhhhc
Q psy4724 1130 QEISSRTEKEIDDARMMYIPVSKHSSVLFFCCAELSNIDPMYQYSLNWFINLYVQSIEG 1188 (1650)
Q Consensus 1130 l~~~~~~~~~i~~~r~~y~pvA~~~s~lyf~l~~L~~i~~mYq~Sl~~f~~lf~~~i~~ 1188 (1650)
..++++.+.+|++..+.|.-..+|.-.++-.++-+.....||.+|...|..-|.+....
T Consensus 2680 ~sEs~ei~~riD~L~~eY~~svk~~~sI~v~~~~F~~~~~~y~~si~~~~s~f~k~~~~ 2738 (3164)
T COG5245 2680 ESESMEIEDRIDALKSEYNASVKRLESIRVEIAMFDEKALMYNKSICELSSEFEKWRRM 2738 (3164)
T ss_pred HhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999887654
No 3
>PF12781 AAA_9: ATP-binding dynein motor region D5; PDB: 3VKG_A 3VKH_C 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=100.00 E-value=9.1e-60 Score=523.61 Aligned_cols=228 Identities=53% Similarity=0.876 Sum_probs=201.0
Q ss_pred ccCCHHHHHHHHhCCCCCCchhhhhhHHhhcCCCcccccCchhHHHHHHHHhccCCcEEEecCChhHHHHHHHHHHcCCe
Q psy4724 898 TLGDAVKIRSWNINGLPVDNFSIENGIILFNSNKWPLLIDPQGQANKWLKNVEKGNLSVVKLTDATLLRTLERAIRTGTA 977 (1650)
Q Consensus 898 ~l~~~~~~~~w~~~gLP~D~~s~enaii~~~~~r~PLlIDPq~qa~~wik~~~~~~l~v~~~~~~~~~~~le~ai~~G~~ 977 (1650)
+|+|+.+++.|+.+|||+|.+|+|||+|+.++.||||+|||||||.+||++++++++.|+++++++|+++||+|+++|+|
T Consensus 1 ~L~d~~~i~~W~~~GLP~D~~siENa~i~~~~~r~PLiIDPq~qa~~wi~~~~~~~l~v~~~~~~~~~~~le~air~G~~ 80 (228)
T PF12781_consen 1 MLSDDVEIRQWISQGLPSDQLSIENAIILKNSRRWPLIIDPQGQANKWIKNMYKNDLEVTSFSDSNFLKQLENAIRFGKP 80 (228)
T ss_dssp ---------HHHHCT--SSHHHHHHHHHCCC-SSEEEEESTTTCHHHHHHHHCCCCEEEEETTSTCHHHHHHHHHHCT-E
T ss_pred CCccccchhhHHhcCCCCCchHHhhHHHHhhcCCCceEECCchHHHHHHHHhhhhcccccccchHhHHHHHHHHHHcCCe
Confidence 48899999999999999999999999999999999999999999999999999878999999999999999999999999
Q ss_pred EEEecccccccccchHHHhHHHHhhcCeEEEEecCeeeeecCCeeEEEEeCCCCCCCCcccccceEEEEeeeChhhHHHH
Q psy4724 978 VLLENIQETIDSSLEPVLLKSYYKIQNQLIMTLNNKEIEYNIKFRLYITTRLKNPHYIPEILTKITLINFMITPQGLQNQ 1057 (1650)
Q Consensus 978 vlie~v~e~~dp~l~p~L~~~~~~~~~~~~i~ig~~~i~~~~~FrL~l~Tk~~np~~~pe~~~~~tvinf~vt~~gLe~q 1057 (1650)
|||+||+|.+||+|+|+|.|++++.| .+|++||+.|+|||+|||||+|+++||||+|+++++||+|||++|++||++|
T Consensus 81 llIe~v~e~~dp~l~plL~k~~~~~g--~~i~igd~~v~~~~~FrL~L~T~~~~p~~~pe~~s~vtviNFtvt~~gLe~q 158 (228)
T PF12781_consen 81 LLIENVGESLDPILDPLLRKNIIKSG--KFIKIGDKEVDYNPNFRLYLTTKLPNPHYPPEVSSKVTVINFTVTQEGLEDQ 158 (228)
T ss_dssp EEEC-GCSCHHCTCHHHHTTT-EE-S--SEEESSSSEEE--SS-EEEEEESSTTSHHHHHHHHCSEEEE----CHHHHHH
T ss_pred eeecccccccChhhhhhhcchhccCC--ceEEecCeEEEeeccceEEEeecCCCCCCChhhhceeeEEEEEecHHHHHHH
Confidence 99999999999999999999998775 3899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhHHHHHHHH
Q psy4724 1058 LLGIVVAKEKPDLETKKNELIIESANNKKILKETEDKILEVLSSSQGNILEDESAVQILTSSKVLSAEIT 1127 (1650)
Q Consensus 1058 lL~~vv~~e~peLe~~~~~l~~~~~~~k~~L~~lEd~lL~~L~~s~g~iLdd~~li~~L~~sK~~~~~i~ 1127 (1650)
||+.+|++|+|+||++|.+|+.+.++++.+|+++||+||+.|++++|+||||++||++|+.+|.+|.+|.
T Consensus 159 ll~~vv~~e~PeLe~~r~~L~~~~~~~k~~L~~lEd~lL~~Ls~s~g~iLed~~Li~~L~~sK~~a~~Ie 228 (228)
T PF12781_consen 159 LLSIVVKHERPELEEQRNELLKEIAENKIQLKELEDQLLELLSNSEGNILEDEELIETLESSKKTAAEIE 228 (228)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCTSSCCCCHCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccCcHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999984
No 4
>PF03028 Dynein_heavy: Dynein heavy chain and region D6 of dynein motor; InterPro: IPR004273 Dynein is a multisubunit microtubule-dependent motor enzyme that acts as the force generating protein of eukaryotic cilia and flagella. The cytoplasmic isoform of dynein acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. Dynein is composed of a number of ATP-binding large subunits, intermediate size subunits and small subunits (see IPR001372 from INTERPRO). This family represents the C-terminal region of dynein heavy chain. The dynein heavy chain also exhibits ATPase activity and microtubule binding ability and acts as a motor for the movement of organelles and vesicles along microtubules. ; GO: 0003777 microtubule motor activity, 0007018 microtubule-based movement, 0030286 dynein complex; PDB: 3VKG_A 3VKH_C 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=100.00 E-value=3.6e-50 Score=528.41 Aligned_cols=323 Identities=37% Similarity=0.676 Sum_probs=230.5
Q ss_pred CCCCCCCCCCCHHhHHHHHHhcCCCCccchHHHHhhChhhhHhhhcCCCCccccCC--CccccchhHHHHHHHhhcCCch
Q psy4724 1259 DSPNPSPSWLSNKTWTDIIQISKLPQLGDLKASVKTKNSEWKSYYDSKTPEKERVS--YVQDKSDICVLNILKIIRPDKV 1336 (1650)
Q Consensus 1259 ~~~~~~~~wl~~~~w~~i~~L~~~~~f~~l~~~~~~~~~~W~~~~~~~~p~~~~~p--~~~~l~~fq~lll~r~lrpdr~ 1336 (1650)
..+||.++||+++.|.+|+.|+++|.|.+|.++|..+.++|++||++..||..++| |...+++||||||+||+||||+
T Consensus 3 ~~~~p~~~wl~~~~w~~i~~L~~l~~F~~l~~~~~~~~~~W~~~~~~~~pe~~~~P~~~~~~l~~fqklllir~lRpDrl 82 (707)
T PF03028_consen 3 TIPNPIPSWLSDEQWQNICALSKLPSFKGLCESIESNPEEWKQWFESDSPEEEPLPSPWEENLTPFQKLLLIRALRPDRL 82 (707)
T ss_dssp --GGGTTTS-HHHHHHHHHHHHC-GGGSSHHHHHHHTHHHHHHHC-SS-SS-----HHHHHHHHHHHHHHHHHHH-CCCH
T ss_pred CCCCCCcCcCCHHHHHHHHHHhCCcchHHHHHHHHhCHHHHHHHHcCCCcccccCChhhhhcccHHHHHHHHHHhCccHh
Confidence 35688899999999999999999999999999999999999999999999999999 7778999999999999999999
Q ss_pred HHHHHHHHHhhcCCCcccCcccChhhhhhcCCCCcceEEEcCCCcChHHHHHHHHHhcc--cCCCeeeccCcch------
Q psy4724 1337 IQGIQIYVSKNLGEQYIVSPPFSLKQSYDDSNCCTPLIFILSAGSDPMDLLLKFNSDMN--AAKPLTVSLGQGI------ 1408 (1650)
Q Consensus 1337 ~~~~~~fi~~~lG~~~~~~~~~~l~~~~~~s~~~~P~ifils~g~DP~~~l~~~a~~~~--~~~~~~islGqgq------ 1408 (1650)
..++++||..+||..|+++++++++.+|.+|+++||+|||+|||+||+..|.+||++++ ..++..|||||||
T Consensus 83 ~~~~~~~v~~~lg~~~~~~~~~~l~~~~~~s~~~~Pil~~~s~g~Dp~~~i~~lA~~~~~~~~~~~~islG~~~~~~a~~ 162 (707)
T PF03028_consen 83 IAAMRKFVSSVLGSRFVEPPPFDLESIYEESSPTTPILFILSPGSDPSSEIEQLAKKKGFGNKKLQSISLGSGQGPEAEK 162 (707)
T ss_dssp HHHHHHHHHHHH-TTTTS-----HHHHHHCTTTTC-EEEEE-TT--THHHHHHHHHCTT-----EEEEETTSHHHHHHHH
T ss_pred HHHHHHHHHHHcCchhhcCCCCCHHHHHHhcCCCCceEEEeCCCCChHHHHHHHHHHHhhhhhheeecCCCCchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999985 3579999999996
Q ss_pred --------------------------------------------------------------------------------
Q psy4724 1409 -------------------------------------------------------------------------------- 1408 (1650)
Q Consensus 1409 -------------------------------------------------------------------------------- 1408 (1650)
T Consensus 163 ~l~~a~~~G~Wv~L~N~HL~~~wl~~Le~~l~~~~~~~h~~FRL~lt~~~~~~~P~~lL~~s~kv~~E~p~gik~~l~~~ 242 (707)
T PF03028_consen 163 ALKEAAKEGHWVLLQNCHLAPSWLPQLEKKLESLSPEIHPNFRLFLTSEPSPSFPISLLQSSIKVTYEPPPGIKANLLRT 242 (707)
T ss_dssp HHHHHHHHTSEEEEETGGGGCCCHHCHHHHHHC-SSTTSTT-EEEEEEESSTTS-HHHHHCSEEEEE---SSHHHHHHHH
T ss_pred HHHHHhcCCeEEEcccchhHHHHHHHHHHHHhccccccccceEEEEEecCcccCCHHHHHcccceeeCChhHHHHHHHHH
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q psy4724 1409 -------------------------------------------------------------------------------- 1408 (1650)
Q Consensus 1409 -------------------------------------------------------------------------------- 1408 (1650)
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~l~f~L~~fHavl~eR~~y~p~Gw~~~Y~f~~sDl~~a~~~l~~~~~~~~~~~ipw~~l~~ 322 (707)
T PF03028_consen 243 YNSISQDFFEMCSKPPEWRRLLFLLAWFHAVLQERRRYGPLGWNKPYEFNDSDLRAALDILDNWLDESSPESIPWDALRY 322 (707)
T ss_dssp HCC--SCCHHHTSSSCHHHHHHHHHHHHHHHHHHHHHCTTTTSSS-----HHHHHHHHHHHHHHHHHCSCCCTTHHHHHH
T ss_pred HHhhhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHhcCCcccceeeeechHHHHHHHHHHHHHHhhccccCCcHHHHHH
Confidence
Q ss_pred ---------------------------------------------------------HHHhhcCCCCCCCcccccccchh
Q psy4724 1409 ---------------------------------------------------------QSYIQSLPLNNTPEIFGLHENAD 1431 (1650)
Q Consensus 1409 ---------------------------------------------------------~~~i~~lp~~~~p~~fglh~na~ 1431 (1650)
++||++||..|+|++||||+||+
T Consensus 323 l~~~i~YGGrv~d~~D~r~l~~~~~~~f~~~~~~~~~~l~~~~~~~~~P~~~~~~~~~~~i~~lp~~~~p~~~GL~~na~ 402 (707)
T PF03028_consen 323 LIGEIVYGGRVDDEWDRRLLNTLLNQFFNPEIFDPDFQLSPDSGSYSIPDSNSLEDYIEWIEQLPDEDPPEWFGLPPNAE 402 (707)
T ss_dssp HHHHTTTTTT-SSHHHHHHHHHHHHHHSSGGGGSTT-EEET-TTTEE----SSHHHHHHHHCTS-SS--CCCCTS-TTHH
T ss_pred HhhhceecCeeccHHHHHHHHHHHHHHcCchhhcchhhcccCCCCccCCccccHHHHHHHHHhCCCCCCccccCCCccHH
Confidence 07899999999999999999999
Q ss_pred hhhhhhhHHHHHHHHHhhccCCCCC-CCCCCChhhHHHHHHHHHHhhCCCCCCHHHHhcccC-CccccchhHHHHHHHHH
Q psy4724 1432 LTKNFNETRLVLGNILLCAQQGSTP-GAQPGDAEAKNVRIIDELLGKFPEQFDEEAAGRKYP-ILYNQSMNTVLKQELIR 1509 (1650)
Q Consensus 1432 i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~-~~~~~~~~~vl~qE~~r 1509 (1650)
+.++.++++.++++++.+||+..++ ++.+.+.++.+.+.+.++++++|..++.+.+..+++ ....+|+++||.||++|
T Consensus 403 ~~~~~~~s~~ll~~l~~l~~~~~~~~~~~~~s~~~~~~~~i~~l~~~lp~~~~~~~~~~~~~~~~~~~Pl~~fl~qE~~~ 482 (707)
T PF03028_consen 403 ISLQQQESRELLSSLLSLQPRESSSSGGSSKSREEQVLSLIKELLEKLPQLFPIEEVKSKRPAENSNDPLNRFLEQEIER 482 (707)
T ss_dssp HHHHHHHHHHHHHHHHHCCCTTT----------HHHHCT-----------------------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhcccccccccccccccchhHHHHHHHHHHHHhhccCCHHHHhccCCccccCCceeeeeHHHHHH
Confidence 9999999999999999999998754 222346789999999999999999999988877764 56679999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCcccCCHhHHHHHHhHhcCCCcccchhccCCCCCCchhhHHHHHHhhcccch
Q psy4724 1510 YNRLTVIIKKSLQEVRQAVKGLIVMSKELEEINTSIMFGKIPQAWASKSYPSLKPLGSYIVDLLARREGRGE 1581 (1650)
Q Consensus 1510 ~n~ll~~i~~sL~~l~~a~~G~~~ms~~le~~~~~l~~~~vP~~W~~~~~ps~k~L~~w~~dl~~r~e~~~~ 1581 (1650)
||+||+.|++||.+|++|++|+++||++|++++++|+.|+||..|.+.+||+.++|++|+.||..|+++-..
T Consensus 483 ~~~LL~~I~~sL~~L~~~lkG~~~~t~~l~~l~~~L~~~~VP~~W~~~~~~s~~~l~~Wl~dL~~Rv~~l~~ 554 (707)
T PF03028_consen 483 FNKLLQIIRQSLQELQKALKGEIKMTNELEALAQSLLKGQVPKSWLRYSYPSPKPLSSWLQDLIKRVEQLQR 554 (707)
T ss_dssp HHHHHHHHHHHHHHHHC---------HHHHHHHHHHHHTS--GGG--S---SS--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHhCCCChhHHhcCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999987654
No 5
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=100.00 E-value=6e-50 Score=455.29 Aligned_cols=206 Identities=33% Similarity=0.626 Sum_probs=170.0
Q ss_pred HhccCCCCCcceeehHHHHHHHHHHHHHhcCCCCceEEEecCCchhhhHHHHHHHhcCCceEEEEEcccCCcchhHHHHH
Q psy4724 43 YNTQNSNKPIDIVTFLYIIQHISRLCRILQQPKGHAMLITIGGSGAAEVTKLATFMNEYVLFEIEILKTYGLTDWRDDLC 122 (1650)
Q Consensus 43 yN~~~~~~~m~lVlF~~ai~Hv~rI~Ril~~p~G~alLvGvgGSGrqSLtrLAafi~~~~~fqIeitk~Yg~~~f~eDLk 122 (1650)
||+ .+.+||||||++||+|||||+|||++|||||||||+|||||+||+||||||++|++|||+++++|+..+|++|||
T Consensus 1 yN~--~n~~m~lVlf~~ai~hi~ri~RvL~~~~Gh~LLvG~~GsGr~sl~rLaa~i~~~~~~~i~~~~~y~~~~f~~dLk 78 (268)
T PF12780_consen 1 YNE--SNTKMNLVLFDEAIEHIARISRVLSQPRGHALLVGVGGSGRQSLARLAAFICGYEVFQIEITKGYSIKDFKEDLK 78 (268)
T ss_dssp ---------------HHHHHHHHHHHHHHCSTTEEEEEECTTTSCHHHHHHHHHHHTTEEEE-TTTSTTTHHHHHHHHHH
T ss_pred CCc--cccccceeeHHHHHHHHHHHHHHHcCCCCCeEEecCCCccHHHHHHHHHHHhccceEEEEeeCCcCHHHHHHHHH
Confidence 887 356899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCCCCEEEEEecCCcCchhhHHHHHHHHhhhhhccccccccccCCCCCccchhhhhhhhcCcchHHhhhchh
Q psy4724 123 RLMKKSGGKDAKPMTFLFSDTQIQNEVFVEHINMLLNTARKRYNMDLTKSYGVCPSMSIVHHLEDLNASPLVYDEIDNLD 202 (1650)
Q Consensus 123 ~l~~~~g~~~~k~~vFl~tD~qI~~E~fLedIN~lL~tge~~~~~~vp~l~~~v~~l~~~~~Le~~~~~~~v~~E~~~~~ 202 (1650)
++|.+|| ++|+++||+++|+||++|+||||||+||+||| |||||+. ||. +
T Consensus 79 ~~~~~ag-~~~~~~vfll~d~qi~~~~fLe~in~LL~sGe------ip~LF~~--------------------eE~---~ 128 (268)
T PF12780_consen 79 KALQKAG-IKGKPTVFLLTDSQIVDESFLEDINSLLSSGE------IPNLFTK--------------------EEL---D 128 (268)
T ss_dssp HHHHHHH-CS-S-EEEEEECCCSSSCHHHHHHHHHHHCSS-------TTTS-T--------------------CHH---H
T ss_pred HHHHHHh-ccCCCeEEEecCcccchHhHHHHHHHHHhCCC------CCCCccH--------------------HHH---H
Confidence 9999999 79999999999999999999999999999999 9999999 888 8
Q ss_pred HHHHHHHHHHHhhhhccCCCCccchhHhHHHHHHHHHHHHhcCCccchhhHHHhhHHHHHHhhhccchhhhcccchhhh-
Q psy4724 203 LLTEKINQYIVDYNTQNSNKPIDIVTFLYIIQHISRLCRILQQPKGHAMLITIGTYRVERKIALGRVHIIRTEKEIDDA- 281 (1650)
Q Consensus 203 ~l~e~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~f~~~~~~l~~lhivlt~s~I~~~- 281 (1650)
.+.+.++..+ ...|.. + +.. +++.||++||+ .|+|+++|++|++..
T Consensus 129 ~i~~~l~~~~-----~~~~~~--~-~~~-----------------------~~~~~F~~rvr--~nLHivl~~sp~~~~~ 175 (268)
T PF12780_consen 129 NIISSLREEA-----KAEGIS--D-SRE-----------------------SLYEFFIERVR--KNLHIVLCMSPVGPNF 175 (268)
T ss_dssp HHHHHHHHHH-----HHCT----S-SHH-----------------------HHHHHHHHHHC--CCEEEEEEESTTTTCC
T ss_pred HHHHHhHHHH-----HHcCCC--C-chH-----------------------HHHHHHHHHHH--hheeEEEEECCCCchH
Confidence 8888888777 333321 1 222 78999999999 999999999999997
Q ss_pred --hhcccccccccceeEeeeccccCCCchhHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHH
Q psy4724 282 --RMMYIPVSKHSSVLFFCCAELSNIDPMYQYSLNWFINLYVQSIEGSEKTDQLDKRLKILMNHF 344 (1650)
Q Consensus 282 --R~~y~PvA~r~S~Ly~~~~~Ls~id~mYqfSl~~F~~lf~~~l~~s~~~~~l~~Rl~~l~~~l 344 (1650)
|++.+| +|++||+ ++||. .||.++|.. ++.++
T Consensus 176 r~~~~~fP------aL~~~ct------------IdW~~---------~W~~eaL~~----Va~~~ 209 (268)
T PF12780_consen 176 RDRCRSFP------ALVNCCT------------IDWFD---------PWPEEALLS----VANKF 209 (268)
T ss_dssp CHHHHHHC------CHHHHSE------------EEEEE---------S--HHHHHH----HHHHH
T ss_pred HHHHHhCc------chhcccE------------EEeCC---------cCCHHHHHH----HHHHH
Confidence 788999 9999999 99996 399999988 77666
No 6
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=100.00 E-value=1.1e-38 Score=380.15 Aligned_cols=333 Identities=29% Similarity=0.364 Sum_probs=257.6
Q ss_pred CcccccchhHHHHHHHHHHHhccCCCChhhhhhhhhhHHHhhhhccCCccccccccchHHHHHHHHHHHhcceehhccch
Q psy4724 509 PYEFNLSDLNISMKQLQMFLNDYTTIPFDALIYLTVDYKYTSQMRQKNPFTLTISRTTQIIEDFMLCIKKGLWIVLQNCH 588 (1650)
Q Consensus 509 ~~~~~l~~l~~~~~~l~~~~~~~~~ip~~~l~~l~~~l~~~~~~~~~~~~~~~i~~g~~~~e~l~~~i~~g~wvllqn~~ 588 (1650)
++..|++++..+..+|..+..++. ...|.+..+..... .....++..+..++.-...+....-.+.....
T Consensus 2 rl~~GL~KL~et~~~V~~m~~~L~--------~~~~~L~~k~~e~e--~ll~~i~~~~~~a~~~~~~~~~ee~~~~~~~~ 71 (344)
T PF12777_consen 2 RLENGLDKLKETEEQVEEMQEELE--------EKQPELEEKQKEAE--ELLEEIEKEQEEAEKKKAIVEEEEEEAEKQAK 71 (344)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788899999999999888765 66676665543100 00001111111111111111111111122223
Q ss_pred hhHHHHHHHHHHHHHhcCCCCcchHHHhhhhcCCCCCcccccc---cchhhhhhcCCccccccccccccCCCCCCcchHh
Q psy4724 589 VAKSWMKELERICAEVIVPANTHQEFRLWLTSYPSTTFPVSVL---ENGIKMIIEPPKGIKNNLFRSYTNDPINSDDFYN 665 (1650)
Q Consensus 589 la~~~~~e~e~~l~~~~~p~~~~a~~~Lw~t~~~~~~~pi~~l---~~~vk~v~E~~~glk~~l~~~~~~~~~~~~~~w~ 665 (1650)
.+.....+++.+|+++. |++..|..+| .++.++++.+|++| |.+|++||+..+.+.... .....+.+|.
T Consensus 72 ei~~~~~~a~~~L~~a~-P~L~~A~~al-~~l~k~di~Eiks~~~PP~~V~~V~~aV~iLl~~~------~~~~k~~~W~ 143 (344)
T PF12777_consen 72 EIEEIKEEAEEELAEAE-PALEEAQEAL-KSLDKSDISEIKSYANPPEAVKLVMEAVCILLGPK------GKLPKDTSWE 143 (344)
T ss_dssp HHCCHHHHHHHHHHHHH-HHHHHHHHHH-HCS-HHHHHHHHHSSS--HHHHHHHHHHHHHTT-S-------SEE---HHH
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHH-HhCCHHHHHHHHhhCCCcHHHHHHHHHHhhHHhcc------ccccccccHH
Confidence 45556788999999999 9999999999 99999999999999 779999999544332110 0001245799
Q ss_pred hhhhhhhh-HHHHHHHhhhhHHHHHHHhhCCCCCCCCccCCcccHHHHHHHHHhhhcCCCCCchhhHhHhhcCcc-----
Q psy4724 666 DSKNVAAW-HKLLFSLCLFHAVVQERKQYGPLGWNIPYEFNLSDLNISMKQLQMFLNDYTTIPFDALIYLTASIP----- 739 (1650)
Q Consensus 666 ~~k~~l~~-~~~l~~L~~fHavv~ER~kf~~lG~ni~y~Fn~sDl~~~~~~l~~~l~~~~~~p~~~l~~~~~s~a----- 739 (1650)
.++.+|++ ++|+..|.. ||+ ++|+.. ++.+|++|+.+|+|+|. .+..+|.|
T Consensus 144 ~ak~~l~~~~~Fl~~L~~----------fd~--~~i~~~--------~~~~l~~~~~~p~F~~e---~v~~~S~Aa~~Lc 200 (344)
T PF12777_consen 144 SAKKLLSDSDNFLQRLKN----------FDK--DNIPEA--------TIKKLKKYLKNPDFNPE---KVRKASKAAGSLC 200 (344)
T ss_dssp HHHCHHCSSTTHHHHHHH----------S-G--GG--HH--------HHHHHHCTTTSTTSSHH---HHHHH-TTHHHHH
T ss_pred HHHHHHHhHHHHHHHHHh----------hcc--ccccHH--------HHHHHHHHhcCCCCCHH---HHHHHhhcchHHH
Confidence 99999987 589999999 999 999988 99999999999999997 45554544
Q ss_pred chhhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4724 740 FQVLAMEVYDRVIKIVGPKKAKLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKLE 819 (1650)
Q Consensus 740 ~Wv~A~~~Y~~v~~~v~P~~~~l~~~e~~l~~~~~~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ 819 (1650)
.||+||+.|+.|++.|+|++.+++++++.+..+++.|+..+.+|.+++++|+.|+.+|++++++++.|+.+++.|+.||+
T Consensus 201 ~WV~A~~~Y~~v~~~V~P~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~ 280 (344)
T PF12777_consen 201 KWVRAMVKYYEVNKEVEPKRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLE 280 (344)
T ss_dssp HHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhchhhccHHHHHHHHHHHHhhchhHHHHHHHHHHhcCCCCHHHHHHHHH-HHHHhh
Q psy4724 820 RAEKLIGGLGGEKTRWSEASANLSKALVNCIGDILICAGIITYLGAFTVDFRNDLIE-QWKSLS 882 (1650)
Q Consensus 820 ra~~Li~~L~~E~~rW~~~~~~~~~~~~~l~Gd~ll~aa~i~Y~G~f~~~~R~~l~~-~w~~~~ 882 (1650)
||.+|++||++|+.||++++..++.+..+++|||||+||||+||||||+.||+.++. .|.++|
T Consensus 281 rA~~Li~~L~~E~~RW~~~~~~l~~~~~~l~GD~llaaa~isY~G~f~~~~R~~l~~~~W~~~l 344 (344)
T PF12777_consen 281 RAEKLISGLSGEKERWSEQIEELEEQLKNLVGDSLLAAAFISYLGPFTPEYRQELLKKMWKPYL 344 (344)
T ss_dssp HHHHHHHCCHHHHHCCHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCTSHHHHHHHHHHH-----
T ss_pred cHHHHHhhhcchhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHcCCCCHHHHHHHHHHhccccC
Confidence 999999999999999999999999999999999999999999999999999999995 598754
No 7
>PF03028 Dynein_heavy: Dynein heavy chain and region D6 of dynein motor; InterPro: IPR004273 Dynein is a multisubunit microtubule-dependent motor enzyme that acts as the force generating protein of eukaryotic cilia and flagella. The cytoplasmic isoform of dynein acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. Dynein is composed of a number of ATP-binding large subunits, intermediate size subunits and small subunits (see IPR001372 from INTERPRO). This family represents the C-terminal region of dynein heavy chain. The dynein heavy chain also exhibits ATPase activity and microtubule binding ability and acts as a motor for the movement of organelles and vesicles along microtubules. ; GO: 0003777 microtubule motor activity, 0007018 microtubule-based movement, 0030286 dynein complex; PDB: 3VKG_A 3VKH_C 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=99.88 E-value=6.5e-24 Score=280.03 Aligned_cols=185 Identities=43% Similarity=0.828 Sum_probs=146.7
Q ss_pred ccccccchHH-HH-HHHHHHHhcceehhccchhhHHHHHHHHHHHHHhcCCCCcchHHHhhhhcCCCCCcccccccchhh
Q psy4724 559 TLTISRTTQI-IE-DFMLCIKKGLWIVLQNCHVAKSWMKELERICAEVIVPANTHQEFRLWLTSYPSTTFPVSVLENGIK 636 (1650)
Q Consensus 559 ~~~i~~g~~~-~e-~l~~~i~~g~wvllqn~~la~~~~~e~e~~l~~~~~p~~~~a~~~Lw~t~~~~~~~pi~~l~~~vk 636 (1650)
.+++|+|+.. ++ .+..|+++|+||++||||++.+|++.+++.+.... + ..|++||||+|+++++.+|+.+|+.|+|
T Consensus 149 ~islG~~~~~~a~~~l~~a~~~G~Wv~L~N~HL~~~wl~~Le~~l~~~~-~-~~h~~FRL~lt~~~~~~~P~~lL~~s~k 226 (707)
T PF03028_consen 149 SISLGSGQGPEAEKALKEAAKEGHWVLLQNCHLAPSWLPQLEKKLESLS-P-EIHPNFRLFLTSEPSPSFPISLLQSSIK 226 (707)
T ss_dssp EEETTSHHHHHHHHHHHHHHHHTSEEEEETGGGGCCCHHCHHHHHHC-S-S-TTSTT-EEEEEEESSTTS-HHHHHCSEE
T ss_pred ecCCCCchHHHHHHHHHHHhcCCeEEEcccchhHHHHHHHHHHHHhccc-c-ccccceEEEEEecCcccCCHHHHHcccc
Confidence 3455555433 23 35578999999999999999999999999998765 3 5699999999999999999999999999
Q ss_pred hhhcCCccccccccccccCCCCCCcchHhhhhhhhhhHHHHHHHhhhhHHHHHHHhhCCCCCCCCccCCcccHHHHHHHH
Q psy4724 637 MIIEPPKGIKNNLFRSYTNDPINSDDFYNDSKNVAAWHKLLFSLCLFHAVVQERKQYGPLGWNIPYEFNLSDLNISMKQL 716 (1650)
Q Consensus 637 ~v~E~~~glk~~l~~~~~~~~~~~~~~w~~~k~~l~~~~~l~~L~~fHavv~ER~kf~~lG~ni~y~Fn~sDl~~~~~~l 716 (1650)
+++|+|.|+|+++.++|... ..+.+..+.+...+.+++|.||||||||+||++|+|+|||++|+||++||.+++..+
T Consensus 227 v~~E~p~gik~~l~~~~~~~---~~~~~~~~~~~~~~~~l~f~L~~fHavl~eR~~y~p~Gw~~~Y~f~~sDl~~a~~~l 303 (707)
T PF03028_consen 227 VTYEPPPGIKANLLRTYNSI---SQDFFEMCSKPPEWRRLLFLLAWFHAVLQERRRYGPLGWNKPYEFNDSDLRAALDIL 303 (707)
T ss_dssp EEE---SSHHHHHHHHHCC-----SCCHHHTSSSCHHHHHHHHHHHHHHHHHHHHHCTTTTSSS-----HHHHHHHHHHH
T ss_pred eeeCChhHHHHHHHHHHHhh---hhhhhhccchHHHHHHHHHHHHHHHHHHHHHHhcCCcccceeeeechHHHHHHHHHH
Confidence 99999999999999999752 223455555556788999999999999999999999999999999999999999999
Q ss_pred HhhhcCC--CCCchhhHhHhhcCccchhhHHHHH
Q psy4724 717 QMFLNDY--TTIPFDALIYLTASIPFQVLAMEVY 748 (1650)
Q Consensus 717 ~~~l~~~--~~~p~~~l~~~~~s~a~Wv~A~~~Y 748 (1650)
..++... +.+||+++++..+++.+..+--..+
T Consensus 304 ~~~~~~~~~~~ipw~~l~~l~~~i~YGGrv~d~~ 337 (707)
T PF03028_consen 304 DNWLDESSPESIPWDALRYLIGEIVYGGRVDDEW 337 (707)
T ss_dssp HHHHHHCSCCCTTHHHHHHHHHHTTTTTT-SSHH
T ss_pred HHHHhhccccCCcHHHHHHHhhhceecCeeccHH
Confidence 9999876 7899999999999998665544443
No 8
>KOG3595|consensus
Probab=99.13 E-value=3.9e-11 Score=166.92 Aligned_cols=248 Identities=29% Similarity=0.374 Sum_probs=170.1
Q ss_pred hhhhHHHHHHHhcCCceEEEEEcccCCcchhHHHHHHHHHHhccCCCCCEEEEEecCCcCchhhHHHHHHHHhhhh--hc
Q psy4724 87 GAAEVTKLATFMNEYVLFEIEILKTYGLTDWRDDLCRLMKKSGGKDAKPMTFLFSDTQIQNEVFVEHINMLLNTAR--KR 164 (1650)
Q Consensus 87 GrqSLtrLAafi~~~~~fqIeitk~Yg~~~f~eDLk~l~~~~g~~~~k~~vFl~tD~qI~~E~fLedIN~lL~tge--~~ 164 (1650)
++..+..+..-+......-++-. ..++.-=++.++.+.-...|....+-++|..+. +.-++...+.|+. ||
T Consensus 1135 ~~~~l~~le~a~~~g~~il~~~~----~e~~d~~l~~ll~~~~~~~g~~~~~~~gd~~~~---~~~~f~~~~~t~~~~~~ 1207 (1395)
T KOG3595|consen 1135 EKEFLRQLENALRFGEPVLIEDV----NEELDPALEPLLLKETFKQGGRVLIKLGDKEID---LNPDFRLYITTKLRNPH 1207 (1395)
T ss_pred chhHHHHHHhHhccCCceeccch----hhhhchhhhhhcccceeeccCeEeeecCceeee---cCCCeeEEEeecccCcc
Confidence 34556666555554333332211 122222234555555433444567779999883 5556666777775 77
Q ss_pred cccccccccCCCC---CccchhhhhhhhcCcchHHhhhchhHHHHHHHHHHHhhhhccCCCCccchhHhHHHHHHHHHHH
Q psy4724 165 YNMDLTKSYGVCP---SMSIVHHLEDLNASPLVYDEIDNLDLLTEKINQYIVDYNTQNSNKPIDIVTFLYIIQHISRLCR 241 (1650)
Q Consensus 165 ~~~~vp~l~~~v~---~l~~~~~Le~~~~~~~v~~E~~~~~~l~e~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~ 241 (1650)
| +|.+..++. .+.+.+++++|+++.++..|. ++++......+..-.... ....+...++..
T Consensus 1208 ~---~p~~~~~~~~v~f~~t~~~l~~qll~~v~~~e~---~~~~~~~~~l~~~~~~~~----------~~lk~le~~lL~ 1271 (1395)
T KOG3595|consen 1208 Y---LPELSARVTLVNFTVTPSGLEDQLLGSVVAIER---PDLEEERSDLIKLQAEIK----------RQLKELEDRLLE 1271 (1395)
T ss_pred c---ChhhhhceeEEEeEechhHHHHHHHHHHHHHhc---chHHHHHHHHHHHHHHHH----------HHHHHHHHHHHH
Confidence 7 777776643 345789999999999999999 777777776663311110 011122345666
Q ss_pred HhcCCccchhhHHH-----hhHHHHH-Hhhhccch-hhhcccchhhhhhcccccccccceeEeeeccccCCCchhHHHHH
Q psy4724 242 ILQQPKGHAMLITI-----GTYRVER-KIALGRVH-IIRTEKEIDDARMMYIPVSKHSSVLFFCCAELSNIDPMYQYSLN 314 (1650)
Q Consensus 242 ~l~~~~~~~~~~~i-----~~~f~~~-~~~l~~lh-ivlt~s~I~~~R~~y~PvA~r~S~Ly~~~~~Ls~id~mYqfSl~ 314 (1650)
.+....|+.....- -...+.. +. .++. ...++.+++.+|..|+|+|.|++.+||++++|+.++||||||++
T Consensus 1272 ~l~~s~~~~l~~~~~~~~l~~~K~~~~i~--~k~~e~~~~e~~i~~~r~~y~p~a~~~~~l~~~~~~l~~i~~myq~sl~ 1349 (1395)
T KOG3595|consen 1272 RLSSSEGNILEDDELIVTLESSKVEAAIK--EKLEEAEETEKEIDAAREQYRPLAIHSSILYFSISDLANIHPMYQYSLK 1349 (1395)
T ss_pred HHhcccCcccccHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhhHHHHhHhhhheehhhccccChHHHHHHH
Confidence 67667675532111 1111111 11 2233 33788899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhH
Q psy4724 315 WFINLYVQSIEGSEKTDQLDKRLKILMNHFTYSIYKNICRSLFEDHKL 362 (1650)
Q Consensus 315 ~F~~lf~~~l~~s~~~~~l~~Rl~~l~~~lt~~vy~~v~r~Lfe~~kl 362 (1650)
||+.+|..++.. .+.+.+|+.+++.++++.+|.+++||||+.|++
T Consensus 1350 ~f~~~f~~~~~~---~~~~~~r~~~l~~~~~~~v~~~~~r~l~e~dkl 1394 (1395)
T KOG3595|consen 1350 WFLNLFHVVIER---SESLSKRLANLIDSLTYSVYCNVSRGLFEKDKL 1394 (1395)
T ss_pred HHHHHHHHHHhc---cccHHHHHHHHHHHhHHHHHHHHHHHhhhhccc
Confidence 999999999987 788899999999999999999999999999985
No 9
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=97.78 E-value=7.5e-05 Score=96.88 Aligned_cols=167 Identities=14% Similarity=0.095 Sum_probs=118.0
Q ss_pred hHHHHHHHHHHHhcceehhccchhhHHHHHHHHHHHHHhcCCCCc-chHHHhhhhcCCCCCcccccccchhhhhhcCCcc
Q psy4724 566 TQIIEDFMLCIKKGLWIVLQNCHVAKSWMKELERICAEVIVPANT-HQEFRLWLTSYPSTTFPVSVLENGIKMIIEPPKG 644 (1650)
Q Consensus 566 ~~~~e~l~~~i~~g~wvllqn~~la~~~~~e~e~~l~~~~~p~~~-~a~~~Lw~t~~~~~~~pi~~l~~~vk~v~E~~~g 644 (1650)
..+...+..+-.++.|..++|.|+..+|...+-.+.-+....+.. +...+.|-....++..|+..++..-..|++.-++
T Consensus 2904 ~ya~~~~~~S~~e~~w~~v~nI~lS~~w~k~y~~~~v~~~kaS~~~~k~k~~~t~~~~~d~lp~qlL~~~dsfv~~~~p~ 2983 (3164)
T COG5245 2904 VYAVLNSLFSRKEKSWFEVYNISLSFGWFKRYVEDVVYPIKASRVCGKVKNMWTSMVDADMLPIQLLIAIDSFVSSTYPE 2983 (3164)
T ss_pred HHHHHHHHhhccCCceEEEEeeEeecHHHHhhhHhhcchhHHHHHHhhhhheeeeeeccccccHHHHHHhhhhhhccCCc
Confidence 344555666778899999999999999988776543332212222 3455666667888999999999888899996556
Q ss_pred ccccccccccCCCCCCcchHhhhhhhh-hhHHHHHHHhhhhHHHHHHHhhCCCCCCCCccCCcccHHHHHHHHHhhhcC-
Q psy4724 645 IKNNLFRSYTNDPINSDDFYNDSKNVA-AWHKLLFSLCLFHAVVQERKQYGPLGWNIPYEFNLSDLNISMKQLQMFLND- 722 (1650)
Q Consensus 645 lk~~l~~~~~~~~~~~~~~w~~~k~~l-~~~~~l~~L~~fHavv~ER~kf~~lG~ni~y~Fn~sDl~~~~~~l~~~l~~- 722 (1650)
.+.+....+..++.. .+-.+ ..-+..|-|.||||.|-+|-.++|-|||-+|-|+++|+.-.-..|++.+-.
T Consensus 2984 ~~~~~~dL~e~~~~~-------~~~t~v~~~~~~f~Lsw~ha~va~v~~~~p~~~~e~~Yf~D~df~f~T~~L~NIl~~n 3056 (3164)
T COG5245 2984 TGCGYADLVEIDRYP-------FDYTLVIACDDAFYLSWEHAAVASVISAGPKENNEEIYFGDKDFEFKTHLLKNILFLN 3056 (3164)
T ss_pred ccccHHHHHhcCccc-------ccceeeeeehhHHHHHHHHHHHHHHhhcccccCCCceeeCcchHHHHHHHHHHHHhcc
Confidence 665554444322210 01111 123667889999999999999999999999999999999988888875533
Q ss_pred -CCCCchhhHhHhhcCcc
Q psy4724 723 -YTTIPFDALIYLTASIP 739 (1650)
Q Consensus 723 -~~~~p~~~l~~~~~s~a 739 (1650)
.+..||...+-+...+.
T Consensus 3057 hln~~~wg~~rDlI~tIv 3074 (3164)
T COG5245 3057 HLNARKWGNNRDLIFTIV 3074 (3164)
T ss_pred ccccccccchhhheeEee
Confidence 36678876665555444
No 10
>KOG0250|consensus
Probab=97.46 E-value=0.28 Score=64.66 Aligned_cols=188 Identities=16% Similarity=0.158 Sum_probs=95.6
Q ss_pred cEEEecCChhHHHHHHHHHHcCCeEEEeccccc---c--c--ccchHHHhHHHHhhcCeEEEEecCeeeeecCCeeEEEE
Q psy4724 954 LSVVKLTDATLLRTLERAIRTGTAVLLENIQET---I--D--SSLEPVLLKSYYKIQNQLIMTLNNKEIEYNIKFRLYIT 1026 (1650)
Q Consensus 954 l~v~~~~~~~~~~~le~ai~~G~~vlie~v~e~---~--d--p~l~p~L~~~~~~~~~~~~i~ig~~~i~~~~~FrL~l~ 1026 (1650)
+.++.++||..+..|-.-..--..|||||=.|. + | |. -+.+.+...|++.+. --|+ |.+
T Consensus 576 l~~le~ddp~V~N~LID~s~iE~~lLiEdk~Ea~~~m~s~~~p~---n~~~aytldg~~~~~--------~g~~---~~~ 641 (1074)
T KOG0250|consen 576 LDALEFDDPEVLNVLIDKSGIEQVLLIEDKKEAREFMQSDKPPA---NVTKAYTLDGRQIFA--------GGPN---YRV 641 (1074)
T ss_pred eeeeecCChHHHHHhhhhccceeEEEecchHHHHHHHhcCCCCc---cceeeeccCcccccc--------CCCC---cce
Confidence 788899999999999999999999999993221 1 1 11 011111222222221 2233 333
Q ss_pred eCCCCCCCCcccccceEEEEeeeChhhHHHHHHHHH--HHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Q psy4724 1027 TRLKNPHYIPEILTKITLINFMITPQGLQNQLLGIV--VAKEKPDLETKKNELIIESANNKKILKETEDKILE------- 1097 (1650)
Q Consensus 1027 Tk~~np~~~pe~~~~~tvinf~vt~~gLe~qlL~~v--v~~e~peLe~~~~~l~~~~~~~k~~L~~lEd~lL~------- 1097 (1650)
+...+++-. +-.+++|++...- ++|=..+ +..+-++++.++.+.-..+.+.+..++.+-..+.+
T Consensus 642 ySt~~~~~r-----~~~~~~~s~d~~i--e~le~e~~~l~~~~~~l~~~~~~~e~~l~e~~~~~~~l~~~~~q~~~~~~~ 714 (1074)
T KOG0250|consen 642 YSTRGTRAR-----RPGVDEFSFDDEI--EDLEREASRLQKEILELENQRREAEKNLEELEKKLRELSEHIEQIKRRIRK 714 (1074)
T ss_pred eccCCCCCC-----CccccchhHhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 322222211 5568888876321 1111122 22333566666666655555555555544443322
Q ss_pred ------HHhc-CCCCCCCCHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q psy4724 1098 ------VLSS-SQGNILEDESAVQIL-TSSKVLSAEITAKQEISSRTEKEIDDARMMYIPVSKHSSVLFFCCAE 1163 (1650)
Q Consensus 1098 ------~L~~-s~g~iLdd~~li~~L-~~sK~~~~~i~~~l~~~~~~~~~i~~~r~~y~pvA~~~s~lyf~l~~ 1163 (1650)
.|.+ +.+.-+| ...++.| ..-+..-.+|.+.-...+++..++......-+|+-.--+..++.+..
T Consensus 715 ~~~em~el~n~~e~~~~~-~~~~~~l~~ei~~~~~eIe~~~~~~e~l~~e~e~~~~e~~e~~~~~~~~~~~l~~ 787 (1074)
T KOG0250|consen 715 KRAEMTELKNTAEEKQVD-ISKLEDLAREIKKKEKEIEEKEAPLEKLKEELEHIELEAQELEEYYAAGREKLQG 787 (1074)
T ss_pred HHHHHHHHhhhhhhhhcc-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2233 2232222 2223332 34455556666666666666666666666666665555555554443
No 11
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=95.00 E-value=0.077 Score=54.50 Aligned_cols=72 Identities=17% Similarity=0.183 Sum_probs=57.4
Q ss_pred eEEEecCCchhhhHHHHHHHhcCCceEEEEEcccC--CcchhHHHHHHHHHHhccCCCCCEEEEEecCCcCchhh
Q psy4724 78 AMLITIGGSGAAEVTKLATFMNEYVLFEIEILKTY--GLTDWRDDLCRLMKKSGGKDAKPMTFLFSDTQIQNEVF 150 (1650)
Q Consensus 78 alLvGvgGSGrqSLtrLAafi~~~~~fqIeitk~Y--g~~~f~eDLk~l~~~~g~~~~k~~vFl~tD~qI~~E~f 150 (1650)
.||.|+.|+||.++++.-|.-.++.++.+....-. ...+....+..++.++. ..++|+|++|.|-+......
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~vl~iDe~d~l~~~~ 74 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAK-KSAKPCVLFIDEIDKLFPKS 74 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHH-HTSTSEEEEEETGGGTSHHC
T ss_pred CEEECcCCCCeeHHHHHHHhhccccccccccccccccccccccccccccccccc-ccccceeeeeccchhccccc
Confidence 48999999999999999999889999888766433 44566778888898876 34458999999988775554
No 12
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.61 E-value=0.12 Score=64.22 Aligned_cols=91 Identities=19% Similarity=0.302 Sum_probs=61.4
Q ss_pred HHHHhcCCC-Cce-EEEecCCchhhhHHHHHHHhcCC------------------------ceEEEEEcccCCcchhHHH
Q psy4724 67 LCRILQQPK-GHA-MLITIGGSGAAEVTKLATFMNEY------------------------VLFEIEILKTYGLTDWRDD 120 (1650)
Q Consensus 67 I~Ril~~p~-G~a-lLvGvgGSGrqSLtrLAafi~~~------------------------~~fqIeitk~Yg~~~f~eD 120 (1650)
+.+.++..+ ||+ |+.|..|+||.|++|.-|---+| ++++|....+.|+.+.|+=
T Consensus 30 L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~dviEIdaas~~gVd~IReL 109 (484)
T PRK14956 30 LQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEITKGISSDVLEIDAASNRGIENIREL 109 (484)
T ss_pred HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHHHHccCCccceeechhhcccHHHHHHH
Confidence 555565655 785 99999999999999987654443 3666665556677666653
Q ss_pred HHHHHHHhccCCCCCEEEEEecCCcCchhhHHHHHHHHhhhh
Q psy4724 121 LCRLMKKSGGKDAKPMTFLFSDTQIQNEVFVEHINMLLNTAR 162 (1650)
Q Consensus 121 Lk~l~~~~g~~~~k~~vFl~tD~qI~~E~fLedIN~lL~tge 162 (1650)
+..+.... ..++..|+++.+.|-... +-+|.||.+=|
T Consensus 110 ~e~l~~~p--~~g~~KV~IIDEah~Ls~---~A~NALLKtLE 146 (484)
T PRK14956 110 RDNVKFAP--MGGKYKVYIIDEVHMLTD---QSFNALLKTLE 146 (484)
T ss_pred HHHHHhhh--hcCCCEEEEEechhhcCH---HHHHHHHHHhh
Confidence 33443332 246778999999997655 34677776643
No 13
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=94.10 E-value=0.27 Score=50.95 Aligned_cols=86 Identities=12% Similarity=0.081 Sum_probs=54.4
Q ss_pred cCCCCceEEEecCCchhhhHHHHHHHhc---CCceEEEEEcccCCcchhHHHHH----HHHHHhccCCCCCEEEEEecCC
Q psy4724 72 QQPKGHAMLITIGGSGAAEVTKLATFMN---EYVLFEIEILKTYGLTDWRDDLC----RLMKKSGGKDAKPMTFLFSDTQ 144 (1650)
Q Consensus 72 ~~p~G~alLvGvgGSGrqSLtrLAafi~---~~~~fqIeitk~Yg~~~f~eDLk----~l~~~~g~~~~k~~vFl~tD~q 144 (1650)
..+++|.+++|..|+||.+|++..+.-. ++.++-+..+..+........+. ....... ...++.++++.|.+
T Consensus 16 ~~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~lilDe~~ 94 (151)
T cd00009 16 LPPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELA-EKAKPGVLFIDEID 94 (151)
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhh-ccCCCeEEEEeChh
Confidence 3467799999999999999999988776 77777776665444333222221 1222223 45677899999988
Q ss_pred cCchhhHHHHHHHH
Q psy4724 145 IQNEVFVEHINMLL 158 (1650)
Q Consensus 145 I~~E~fLedIN~lL 158 (1650)
-........+..++
T Consensus 95 ~~~~~~~~~~~~~i 108 (151)
T cd00009 95 SLSRGAQNALLRVL 108 (151)
T ss_pred hhhHHHHHHHHHHH
Confidence 54333333333333
No 14
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.86 E-value=0.23 Score=65.61 Aligned_cols=101 Identities=20% Similarity=0.284 Sum_probs=64.8
Q ss_pred hHHHH--HHHHH-HHHHhcC-CCCce-EEEecCCchhhhHHHHHHHhcCCc------------------------eEEEE
Q psy4724 57 FLYII--QHISR-LCRILQQ-PKGHA-MLITIGGSGAAEVTKLATFMNEYV------------------------LFEIE 107 (1650)
Q Consensus 57 F~~ai--~Hv~r-I~Ril~~-p~G~a-lLvGvgGSGrqSLtrLAafi~~~~------------------------~fqIe 107 (1650)
|++.| +||.+ +.+.+.. --.|+ ||.|..|+||.|++|+-|---.|. ++.+.
T Consensus 15 FddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~DviEid 94 (944)
T PRK14949 15 FEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLIEVD 94 (944)
T ss_pred HHHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEEEec
Confidence 55666 55554 4455544 34788 899999999999999877544432 22232
Q ss_pred EcccCCcchhHHHHHHHHHHhccCCCCCEEEEEecCCcCchhhHHHHHHHHhhhh
Q psy4724 108 ILKTYGLTDWRDDLCRLMKKSGGKDAKPMTFLFSDTQIQNEVFVEHINMLLNTAR 162 (1650)
Q Consensus 108 itk~Yg~~~f~eDLk~l~~~~g~~~~k~~vFl~tD~qI~~E~fLedIN~lL~tge 162 (1650)
-+...++.++|+=++.+.++ . ..|+..||+|.+.|-... +-.|.||-+=|
T Consensus 95 Aas~~kVDdIReLie~v~~~-P-~~gk~KViIIDEAh~LT~---eAqNALLKtLE 144 (944)
T PRK14949 95 AASRTKVDDTRELLDNVQYR-P-SRGRFKVYLIDEVHMLSR---SSFNALLKTLE 144 (944)
T ss_pred cccccCHHHHHHHHHHHHhh-h-hcCCcEEEEEechHhcCH---HHHHHHHHHHh
Confidence 22246777777644444433 3 357778999999987543 45577887754
No 15
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.85 E-value=0.23 Score=63.43 Aligned_cols=90 Identities=13% Similarity=0.240 Sum_probs=61.6
Q ss_pred HHHhcCC-CCce-EEEecCCchhhhHHHHHHHhcCC-----------------------------ceEEEEEcccCCcch
Q psy4724 68 CRILQQP-KGHA-MLITIGGSGAAEVTKLATFMNEY-----------------------------VLFEIEILKTYGLTD 116 (1650)
Q Consensus 68 ~Ril~~p-~G~a-lLvGvgGSGrqSLtrLAafi~~~-----------------------------~~fqIeitk~Yg~~~ 116 (1650)
.+.|... -.|+ ||.|..|.||.||+|.-+---.| ++++|.-..+-|+.+
T Consensus 29 ~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~aG~hpDviEIdAas~~gVDd 108 (700)
T PRK12323 29 THALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDAGRFVDYIEMDAASNRGVDE 108 (700)
T ss_pred HHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHcCCCCcceEecccccCCHHH
Confidence 3444433 3688 88999999999999865433222 556666666677777
Q ss_pred hHHHHHHHHHHhccCCCCCEEEEEecCCcCchhhHHHHHHHHhhhh
Q psy4724 117 WRDDLCRLMKKSGGKDAKPMTFLFSDTQIQNEVFVEHINMLLNTAR 162 (1650)
Q Consensus 117 f~eDLk~l~~~~g~~~~k~~vFl~tD~qI~~E~fLedIN~lL~tge 162 (1650)
.|+=++++..... .|+..|++|.+.|-.+. +-.|.||-|=|
T Consensus 109 IReLie~~~~~P~--~gr~KViIIDEah~Ls~---~AaNALLKTLE 149 (700)
T PRK12323 109 MAQLLDKAVYAPT--AGRFKVYMIDEVHMLTN---HAFNAMLKTLE 149 (700)
T ss_pred HHHHHHHHHhchh--cCCceEEEEEChHhcCH---HHHHHHHHhhc
Confidence 7776655555432 56677899999887654 45688998744
No 16
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=93.67 E-value=0.05 Score=56.79 Aligned_cols=83 Identities=12% Similarity=0.107 Sum_probs=60.7
Q ss_pred ceEEEecCCchhhhHHHHHHHhcCCceEEEEEcccCCcchhHHHHH----------HHHHHhccCCCCCEEEEEecCCcC
Q psy4724 77 HAMLITIGGSGAAEVTKLATFMNEYVLFEIEILKTYGLTDWRDDLC----------RLMKKSGGKDAKPMTFLFSDTQIQ 146 (1650)
Q Consensus 77 ~alLvGvgGSGrqSLtrLAafi~~~~~fqIeitk~Yg~~~f~eDLk----------~l~~~~g~~~~k~~vFl~tD~qI~ 146 (1650)
|.||+|..|+||.+|++..|...++.++.|.++......++.-... ..+.++. .++.++++.+-+-.
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~---~~~~il~lDEin~a 77 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAM---RKGGILVLDEINRA 77 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTH---HEEEEEEESSCGG-
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeecccccccccccccccc---cceeEEEECCcccC
Confidence 6899999999999999999999999999999998766653332211 0011111 15688899998888
Q ss_pred chhhHHHHHHHHhhhh
Q psy4724 147 NEVFVEHINMLLNTAR 162 (1650)
Q Consensus 147 ~E~fLedIN~lL~tge 162 (1650)
++..++.++.+|..+.
T Consensus 78 ~~~v~~~L~~ll~~~~ 93 (139)
T PF07728_consen 78 PPEVLESLLSLLEERR 93 (139)
T ss_dssp -HHHHHTTHHHHSSSE
T ss_pred CHHHHHHHHHHHhhCc
Confidence 8999999999998764
No 17
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.56 E-value=0.23 Score=64.11 Aligned_cols=91 Identities=18% Similarity=0.276 Sum_probs=62.4
Q ss_pred HHHHhcCCC-Cce-EEEecCCchhhhHHHHHHHhcCC-----------------------------ceEEEEEcccCCcc
Q psy4724 67 LCRILQQPK-GHA-MLITIGGSGAAEVTKLATFMNEY-----------------------------VLFEIEILKTYGLT 115 (1650)
Q Consensus 67 I~Ril~~p~-G~a-lLvGvgGSGrqSLtrLAafi~~~-----------------------------~~fqIeitk~Yg~~ 115 (1650)
+.+.+..-+ .|+ |+.|..|+||.|++|+-|--..| ++++|.-..++|+.
T Consensus 28 L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~C~~i~~g~h~D~~eldaas~~~Vd 107 (618)
T PRK14951 28 LTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQACRDIDSGRFVDYTELDAASNRGVD 107 (618)
T ss_pred HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHHHHHHHcCCCCceeecCcccccCHH
Confidence 444555544 488 88999999999999987433222 45666555567877
Q ss_pred hhHHHHHHHHHHhccCCCCCEEEEEecCCcCchhhHHHHHHHHhhhh
Q psy4724 116 DWRDDLCRLMKKSGGKDAKPMTFLFSDTQIQNEVFVEHINMLLNTAR 162 (1650)
Q Consensus 116 ~f~eDLk~l~~~~g~~~~k~~vFl~tD~qI~~E~fLedIN~lL~tge 162 (1650)
+.|+-+..+..+. ..++--|++|.+.|-... +-+|.||.|-|
T Consensus 108 ~iReli~~~~~~p--~~g~~KV~IIDEvh~Ls~---~a~NaLLKtLE 149 (618)
T PRK14951 108 EVQQLLEQAVYKP--VQGRFKVFMIDEVHMLTN---TAFNAMLKTLE 149 (618)
T ss_pred HHHHHHHHHHhCc--ccCCceEEEEEChhhCCH---HHHHHHHHhcc
Confidence 7777665544433 346667899999987654 45788998865
No 18
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.50 E-value=0.49 Score=58.07 Aligned_cols=99 Identities=18% Similarity=0.243 Sum_probs=58.3
Q ss_pred eeehHHHHHHHHHHHHHhcCC-CCce-EEEecCCchhhhHHHHHHHhcCC------------------------ceEEEE
Q psy4724 54 IVTFLYIIQHISRLCRILQQP-KGHA-MLITIGGSGAAEVTKLATFMNEY------------------------VLFEIE 107 (1650)
Q Consensus 54 lVlF~~ai~Hv~rI~Ril~~p-~G~a-lLvGvgGSGrqSLtrLAafi~~~------------------------~~fqIe 107 (1650)
+|--+.+++++ .+.+... -.|+ ||.|+.|+||.|++|.-|--..| ++..+.
T Consensus 18 iiGq~~~~~~l---~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~~~~~ 94 (363)
T PRK14961 18 IIGQKHIVTAI---SNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDLIEID 94 (363)
T ss_pred ccChHHHHHHH---HHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceEEec
Confidence 44444555544 3444443 3577 79999999999999987754332 344443
Q ss_pred EcccCCcchhHHHHHHHHHHhcc--CCCCCEEEEEecCCcCchhhHHHHHHHHhhhh
Q psy4724 108 ILKTYGLTDWRDDLCRLMKKSGG--KDAKPMTFLFSDTQIQNEVFVEHINMLLNTAR 162 (1650)
Q Consensus 108 itk~Yg~~~f~eDLk~l~~~~g~--~~~k~~vFl~tD~qI~~E~fLedIN~lL~tge 162 (1650)
.+...+. +|++.++..+.. ..++.-|+++.|.|-... +..|.+|.+-|
T Consensus 95 ~~~~~~v----~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~---~a~naLLk~lE 144 (363)
T PRK14961 95 AASRTKV----EEMREILDNIYYSPSKSRFKVYLIDEVHMLSR---HSFNALLKTLE 144 (363)
T ss_pred ccccCCH----HHHHHHHHHHhcCcccCCceEEEEEChhhcCH---HHHHHHHHHHh
Confidence 3323444 445444443211 245567889999876543 24677887755
No 19
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=92.47 E-value=0.67 Score=54.31 Aligned_cols=90 Identities=16% Similarity=0.200 Sum_probs=53.8
Q ss_pred HHhcCCCCceEEEecCCchhhhHHHHHHHhcC-CceEEEEEc-cc-------------CCcc-------hhHHHHHHHHH
Q psy4724 69 RILQQPKGHAMLITIGGSGAAEVTKLATFMNE-YVLFEIEIL-KT-------------YGLT-------DWRDDLCRLMK 126 (1650)
Q Consensus 69 Ril~~p~G~alLvGvgGSGrqSLtrLAafi~~-~~~fqIeit-k~-------------Yg~~-------~f~eDLk~l~~ 126 (1650)
-.++.+.|.++|+|..||||.+|++..+.-.. ..+.-..+. .. ||.+ +....|...+.
T Consensus 37 ~~~~~~~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~ 116 (269)
T TIGR03015 37 YGLSQREGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLI 116 (269)
T ss_pred HHHhcCCCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH
Confidence 33566677899999999999999997765533 222211111 11 2221 11222333232
Q ss_pred HhccCCCCCEEEEEecCCcCchhhHHHHHHHHh
Q psy4724 127 KSGGKDAKPMTFLFSDTQIQNEVFVEHINMLLN 159 (1650)
Q Consensus 127 ~~g~~~~k~~vFl~tD~qI~~E~fLedIN~lL~ 159 (1650)
... ..+++.++++.|.|-....-++.+..+.+
T Consensus 117 ~~~-~~~~~~vliiDe~~~l~~~~~~~l~~l~~ 148 (269)
T TIGR03015 117 EQF-AAGKRALLVVDEAQNLTPELLEELRMLSN 148 (269)
T ss_pred HHH-hCCCCeEEEEECcccCCHHHHHHHHHHhC
Confidence 222 35778899999999887766777765543
No 20
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=92.01 E-value=0.59 Score=60.67 Aligned_cols=90 Identities=16% Similarity=0.258 Sum_probs=57.8
Q ss_pred HHHhcCCC-Cce-EEEecCCchhhhHHHHHHHhcCC------------------------ceEEEEEcccCCcchhHHHH
Q psy4724 68 CRILQQPK-GHA-MLITIGGSGAAEVTKLATFMNEY------------------------VLFEIEILKTYGLTDWRDDL 121 (1650)
Q Consensus 68 ~Ril~~p~-G~a-lLvGvgGSGrqSLtrLAafi~~~------------------------~~fqIeitk~Yg~~~f~eDL 121 (1650)
.+.|..-+ .|+ ||.|..|+||.|++|.-+---.| ++++|.-..+.|+.+.|+=+
T Consensus 29 ~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~DviEIDAas~rgVDdIReLI 108 (830)
T PRK07003 29 THALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYVEMDAASNRGVDEMAALL 108 (830)
T ss_pred HHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceEEEecccccccHHHHHHHH
Confidence 34455544 688 78899999999999954432222 45666555566776666655
Q ss_pred HHHHHHhccCCCCCEEEEEecCCcCchhhHHHHHHHHhhhh
Q psy4724 122 CRLMKKSGGKDAKPMTFLFSDTQIQNEVFVEHINMLLNTAR 162 (1650)
Q Consensus 122 k~l~~~~g~~~~k~~vFl~tD~qI~~E~fLedIN~lL~tge 162 (1650)
+.+.... ..++.-|++|.+.|-... +-.|-||-|=|
T Consensus 109 e~a~~~P--~~gr~KVIIIDEah~LT~---~A~NALLKtLE 144 (830)
T PRK07003 109 ERAVYAP--VDARFKVYMIDEVHMLTN---HAFNAMLKTLE 144 (830)
T ss_pred HHHHhcc--ccCCceEEEEeChhhCCH---HHHHHHHHHHH
Confidence 4443322 245667888999887654 34688887744
No 21
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=91.79 E-value=0.61 Score=60.57 Aligned_cols=91 Identities=20% Similarity=0.235 Sum_probs=60.8
Q ss_pred HHHHhcCC-CCce-EEEecCCchhhhHHHHHHHhcCC------------------------ceEEEEEcccCCcchhHHH
Q psy4724 67 LCRILQQP-KGHA-MLITIGGSGAAEVTKLATFMNEY------------------------VLFEIEILKTYGLTDWRDD 120 (1650)
Q Consensus 67 I~Ril~~p-~G~a-lLvGvgGSGrqSLtrLAafi~~~------------------------~~fqIeitk~Yg~~~f~eD 120 (1650)
+.+.++.- -.|| |+.|..|+||.|++|.-|---.| ++++|.-+.+.++.++|+=
T Consensus 28 L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~~g~~~D~ieidaas~~~VddiR~l 107 (647)
T PRK07994 28 LANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIEQGRFVDLIEIDAASRTKVEDTREL 107 (647)
T ss_pred HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHHcCCCCCceeecccccCCHHHHHHH
Confidence 34555443 4687 78999999999999987544333 3455544444567777764
Q ss_pred HHHHHHHhccCCCCCEEEEEecCCcCchhhHHHHHHHHhhhh
Q psy4724 121 LCRLMKKSGGKDAKPMTFLFSDTQIQNEVFVEHINMLLNTAR 162 (1650)
Q Consensus 121 Lk~l~~~~g~~~~k~~vFl~tD~qI~~E~fLedIN~lL~tge 162 (1650)
++.+.++ . ..|+..|++|.+.|-... +-.|.||-|=|
T Consensus 108 i~~~~~~-p-~~g~~KV~IIDEah~Ls~---~a~NALLKtLE 144 (647)
T PRK07994 108 LDNVQYA-P-ARGRFKVYLIDEVHMLSR---HSFNALLKTLE 144 (647)
T ss_pred HHHHHhh-h-hcCCCEEEEEechHhCCH---HHHHHHHHHHH
Confidence 4444433 3 357778999999997654 45688888765
No 22
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=91.64 E-value=0.68 Score=55.42 Aligned_cols=79 Identities=10% Similarity=0.054 Sum_probs=52.3
Q ss_pred CCCceEEEecCCchhhhHHHHHHHhcCCceEEEEEcccCCcchhHHHHHHHHHHhccCCCCCEEEEEecCCcCchhhHHH
Q psy4724 74 PKGHAMLITIGGSGAAEVTKLATFMNEYVLFEIEILKTYGLTDWRDDLCRLMKKSGGKDAKPMTFLFSDTQIQNEVFVEH 153 (1650)
Q Consensus 74 p~G~alLvGvgGSGrqSLtrLAafi~~~~~fqIeitk~Yg~~~f~eDLk~l~~~~g~~~~k~~vFl~tD~qI~~E~fLed 153 (1650)
+.+|++|.|+.|+||.+|++..|.-.+..+..+..+. .....|+...+...+ .+.++++.|-|-..+...+.
T Consensus 29 ~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~----~~~~~~l~~~l~~~~----~~~vl~iDEi~~l~~~~~e~ 100 (305)
T TIGR00635 29 ALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPA----LEKPGDLAAILTNLE----EGDVLFIDEIHRLSPAVEEL 100 (305)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccch----hcCchhHHHHHHhcc----cCCEEEEehHhhhCHHHHHH
Confidence 3468999999999999999988887777654442221 123445555555433 34688888888766655566
Q ss_pred HHHHHhh
Q psy4724 154 INMLLNT 160 (1650)
Q Consensus 154 IN~lL~t 160 (1650)
+.++++.
T Consensus 101 l~~~~~~ 107 (305)
T TIGR00635 101 LYPAMED 107 (305)
T ss_pred hhHHHhh
Confidence 5555543
No 23
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=91.54 E-value=4.2 Score=42.57 Aligned_cols=92 Identities=22% Similarity=0.328 Sum_probs=62.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhc
Q psy4724 757 PKKAKLAEAEADYAVQMEKLNSKRAQ---LATVLGKLQALRDELAQKSKDKKELEDQIELCKQKLERAEKLIGGLGGEKT 833 (1650)
Q Consensus 757 P~~~~l~~~e~~l~~~~~~L~~~~~~---l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~~Li~~L~~E~~ 833 (1650)
-....++.++..+..+...+...... ...+..+|..|..+++.+..........+..+..+.+..++=+..|..+..
T Consensus 46 ~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~ 125 (143)
T PF12718_consen 46 QLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERD 125 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHH
Confidence 33344444444444444444443332 233666677777777777777777777777777777888888999999999
Q ss_pred cHHHHHHHHHHHHhh
Q psy4724 834 RWSEASANLSKALVN 848 (1650)
Q Consensus 834 rW~~~~~~~~~~~~~ 848 (1650)
.|...+..+..++..
T Consensus 126 ~~E~k~eel~~k~~~ 140 (143)
T PF12718_consen 126 QWEEKYEELEEKYKE 140 (143)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999887753
No 24
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=91.18 E-value=0.76 Score=53.67 Aligned_cols=95 Identities=11% Similarity=0.056 Sum_probs=62.0
Q ss_pred HHHHHHHhcCCCCceEEEecCCchhhhHHHHHHHhcCCceEEEEEcccCCcchhHHHH----------------------
Q psy4724 64 ISRLCRILQQPKGHAMLITIGGSGAAEVTKLATFMNEYVLFEIEILKTYGLTDWRDDL---------------------- 121 (1650)
Q Consensus 64 v~rI~Ril~~p~G~alLvGvgGSGrqSLtrLAafi~~~~~fqIeitk~Yg~~~f~eDL---------------------- 121 (1650)
+.|+-+.+.. ++|.||.|..|+||.+|++.-+...|..+..+..+......++.-..
T Consensus 11 ~~~~l~~l~~-g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~ 89 (262)
T TIGR02640 11 TSRALRYLKS-GYPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDI 89 (262)
T ss_pred HHHHHHHHhc-CCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcc
Confidence 3445555554 77999999999999999998888778888888665433333221110
Q ss_pred ------HHHHHHhccCCCCCEEEEEecCCcCchhhHHHHHHHHhhhh
Q psy4724 122 ------CRLMKKSGGKDAKPMTFLFSDTQIQNEVFVEHINMLLNTAR 162 (1650)
Q Consensus 122 ------k~l~~~~g~~~~k~~vFl~tD~qI~~E~fLedIN~lL~tge 162 (1650)
...+..|. .. +.++++.+=+-.+.++...++.+|..|.
T Consensus 90 ~~~~~~~g~l~~A~-~~--g~~lllDEi~r~~~~~q~~Ll~~Le~~~ 133 (262)
T TIGR02640 90 VRQNWVDNRLTLAV-RE--GFTLVYDEFTRSKPETNNVLLSVFEEGV 133 (262)
T ss_pred cceeecCchHHHHH-Hc--CCEEEEcchhhCCHHHHHHHHHHhcCCe
Confidence 01122222 12 2477777777777778888888887764
No 25
>PRK04195 replication factor C large subunit; Provisional
Probab=91.10 E-value=0.94 Score=57.86 Aligned_cols=83 Identities=13% Similarity=0.098 Sum_probs=52.9
Q ss_pred CCCceEEEecCCchhhhHHHHHHHhcCCceEEEEEcccCCcchhHHHHHHHHHHhcc---CCC-CCEEEEEecCCcCch-
Q psy4724 74 PKGHAMLITIGGSGAAEVTKLATFMNEYVLFEIEILKTYGLTDWRDDLCRLMKKSGG---KDA-KPMTFLFSDTQIQNE- 148 (1650)
Q Consensus 74 p~G~alLvGvgGSGrqSLtrLAafi~~~~~fqIeitk~Yg~~~f~eDLk~l~~~~g~---~~~-k~~vFl~tD~qI~~E- 148 (1650)
|..++||.|+.|+||.++++..|--.++.+..+..+..-+. +++..+...+.. ..+ ++.+++|.|.+-...
T Consensus 38 ~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~~----~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~ 113 (482)
T PRK04195 38 PKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRTA----DVIERVAGEAATSGSLFGARRKLILLDEVDGIHGN 113 (482)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccccccH----HHHHHHHHHhhccCcccCCCCeEEEEecCcccccc
Confidence 46789999999999999999888888888888766532222 334433333220 122 567888888775432
Q ss_pred ---hhHHHHHHHHhh
Q psy4724 149 ---VFVEHINMLLNT 160 (1650)
Q Consensus 149 ---~fLedIN~lL~t 160 (1650)
+-.+.+..++..
T Consensus 114 ~d~~~~~aL~~~l~~ 128 (482)
T PRK04195 114 EDRGGARAILELIKK 128 (482)
T ss_pred cchhHHHHHHHHHHc
Confidence 334555555443
No 26
>PRK10865 protein disaggregation chaperone; Provisional
Probab=91.03 E-value=0.6 Score=63.51 Aligned_cols=93 Identities=13% Similarity=0.147 Sum_probs=65.1
Q ss_pred CCCcceeehHHHHHHHHHHHHHh-cCCCCceEEEecCCchhhhHHHHHHHhc----------CCceEEEEEcccC----C
Q psy4724 49 NKPIDIVTFLYIIQHISRLCRIL-QQPKGHAMLITIGGSGAAEVTKLATFMN----------EYVLFEIEILKTY----G 113 (1650)
Q Consensus 49 ~~~m~lVlF~~ai~Hv~rI~Ril-~~p~G~alLvGvgGSGrqSLtrLAafi~----------~~~~fqIeitk~Y----g 113 (1650)
..+++=|+=.+.. |-|+..|| |...+|.+|+|..|+||.++++-.+.-. ++.++.+.+..-. .
T Consensus 174 ~~~l~~vigr~~e--i~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l~ag~~~ 251 (857)
T PRK10865 174 QGKLDPVIGRDEE--IRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKY 251 (857)
T ss_pred cCCCCcCCCCHHH--HHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhhhhccch
Confidence 3457777777764 77888887 4567799999999999999998766544 7888888776422 2
Q ss_pred cchhHHHHHHHHHHhccCCCCCEEEEEecCC
Q psy4724 114 LTDWRDDLCRLMKKSGGKDAKPMTFLFSDTQ 144 (1650)
Q Consensus 114 ~~~f~eDLk~l~~~~g~~~~k~~vFl~tD~q 144 (1650)
.-+|-+-|+.++.... ..++++++++.+-|
T Consensus 252 ~g~~e~~lk~~~~~~~-~~~~~~ILfIDEih 281 (857)
T PRK10865 252 RGEFEERLKGVLNDLA-KQEGNVILFIDELH 281 (857)
T ss_pred hhhhHHHHHHHHHHHH-HcCCCeEEEEecHH
Confidence 2467777888887643 23455665555433
No 27
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.99 E-value=0.87 Score=58.55 Aligned_cols=92 Identities=18% Similarity=0.275 Sum_probs=58.8
Q ss_pred HHHHHhcCCC-Cce-EEEecCCchhhhHHHHHHHhcCC------------------------ceEEEEEcccCCcchhHH
Q psy4724 66 RLCRILQQPK-GHA-MLITIGGSGAAEVTKLATFMNEY------------------------VLFEIEILKTYGLTDWRD 119 (1650)
Q Consensus 66 rI~Ril~~p~-G~a-lLvGvgGSGrqSLtrLAafi~~~------------------------~~fqIeitk~Yg~~~f~e 119 (1650)
.+.+.+...+ .|| ||.|+.|+||.|++|.-|---+| ++++|.-+.+.++.++|+
T Consensus 26 ~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDviEIDAAs~~~VddIRe 105 (702)
T PRK14960 26 ALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDLIEIDAASRTKVEDTRE 105 (702)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCceEEecccccCCHHHHHH
Confidence 3455555443 578 99999999999999865543333 566666555556666666
Q ss_pred HHHHHHHHhccCCCCCEEEEEecCCcCchhhHHHHHHHHhhhh
Q psy4724 120 DLCRLMKKSGGKDAKPMTFLFSDTQIQNEVFVEHINMLLNTAR 162 (1650)
Q Consensus 120 DLk~l~~~~g~~~~k~~vFl~tD~qI~~E~fLedIN~lL~tge 162 (1650)
=+..+.+.. ..|+..|+++.+.|-.+. +-.|.||.+=|
T Consensus 106 li~~~~y~P--~~gk~KV~IIDEVh~LS~---~A~NALLKtLE 143 (702)
T PRK14960 106 LLDNVPYAP--TQGRFKVYLIDEVHMLST---HSFNALLKTLE 143 (702)
T ss_pred HHHHHhhhh--hcCCcEEEEEechHhcCH---HHHHHHHHHHh
Confidence 444433322 246677889999887654 34566776543
No 28
>PRK10884 SH3 domain-containing protein; Provisional
Probab=90.99 E-value=2.8 Score=46.56 Aligned_cols=83 Identities=11% Similarity=0.193 Sum_probs=49.6
Q ss_pred chhhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4724 740 FQVLAMEVYDRVIKIVGPKKAKLAEAEADYAVQMEKLNSKRAQLA----TVLGKLQALRDELAQKSKDKKELEDQIELCK 815 (1650)
Q Consensus 740 ~Wv~A~~~Y~~v~~~v~P~~~~l~~~e~~l~~~~~~L~~~~~~l~----~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~ 815 (1650)
-||.+ .-.....|.+.++.++++++++.+++|+..+.+.. ++++++++......+..++.++|.++++.++
T Consensus 78 GWV~~-----~~Ls~~p~~~~rlp~le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~ 152 (206)
T PRK10884 78 AWIPL-----KQLSTTPSLRTRVPDLENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQ 152 (206)
T ss_pred EeEEH-----HHhcCCccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67743 33566677888888888888888888887765533 3344444444444445555555555555555
Q ss_pred HHHHHHHHHHhh
Q psy4724 816 QKLERAEKLIGG 827 (1650)
Q Consensus 816 ~rl~ra~~Li~~ 827 (1650)
.+++.++.-+..
T Consensus 153 ~~~~~l~~~~~~ 164 (206)
T PRK10884 153 KKVDAANLQLDD 164 (206)
T ss_pred HHHHHHHHHHHH
Confidence 555444443333
No 29
>PRK13342 recombination factor protein RarA; Reviewed
Probab=90.73 E-value=0.8 Score=57.30 Aligned_cols=88 Identities=11% Similarity=0.189 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHhcCCC-CceEEEecCCchhhhHHHHHHHhcCCceEEEEEcccCCcchhHHHHHHHHHHhccCCCCCE
Q psy4724 58 LYIIQHISRLCRILQQPK-GHAMLITIGGSGAAEVTKLATFMNEYVLFEIEILKTYGLTDWRDDLCRLMKKSGGKDAKPM 136 (1650)
Q Consensus 58 ~~ai~Hv~rI~Ril~~p~-G~alLvGvgGSGrqSLtrLAafi~~~~~fqIeitk~Yg~~~f~eDLk~l~~~~g~~~~k~~ 136 (1650)
+.++..-..+.+++...+ +|++|.|..|+||.||++.-+.-.+..+..+..+ ..+..++++-+..... .. ..++..
T Consensus 18 ~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~-~~~~~~ir~ii~~~~~-~~-~~g~~~ 94 (413)
T PRK13342 18 EHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAV-TSGVKDLREVIEEARQ-RR-SAGRRT 94 (413)
T ss_pred HHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecc-cccHHHHHHHHHHHHH-hh-hcCCce
Confidence 444444344666665554 4899999999999999999888878777776544 2344444433322221 12 245678
Q ss_pred EEEEecCCcCch
Q psy4724 137 TFLFSDTQIQNE 148 (1650)
Q Consensus 137 vFl~tD~qI~~E 148 (1650)
++++.|-+-.+.
T Consensus 95 vL~IDEi~~l~~ 106 (413)
T PRK13342 95 ILFIDEIHRFNK 106 (413)
T ss_pred EEEEechhhhCH
Confidence 888888775433
No 30
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=90.71 E-value=0.71 Score=61.50 Aligned_cols=107 Identities=12% Similarity=0.142 Sum_probs=64.6
Q ss_pred eeehHHHHHHHHHHHHHh-------cCCCCceEEEecCCchhhhHHHHHHHhcCCceEEEEEcccCCcchhHHHH-----
Q psy4724 54 IVTFLYIIQHISRLCRIL-------QQPKGHAMLITIGGSGAAEVTKLATFMNEYVLFEIEILKTYGLTDWRDDL----- 121 (1650)
Q Consensus 54 lVlF~~ai~Hv~rI~Ril-------~~p~G~alLvGvgGSGrqSLtrLAafi~~~~~fqIeitk~Yg~~~f~eDL----- 121 (1650)
+|==++|++.|++.-+.. +.|.|+.||+|+.|+||..|++.-|-..+..++.+..+ .|.......+|
T Consensus 460 ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~s-e~~~~~~~~~LiG~~~ 538 (758)
T PRK11034 460 VFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMS-EYMERHTVSRLIGAPP 538 (758)
T ss_pred EeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeech-hhcccccHHHHcCCCC
Confidence 344488999888877754 46889999999999999999987766667777777654 23221111111
Q ss_pred -------HHHHHHhccCCCCCEEEEEecCCcCchhhHHHHHHHHhhhh
Q psy4724 122 -------CRLMKKSGGKDAKPMTFLFSDTQIQNEVFVEHINMLLNTAR 162 (1650)
Q Consensus 122 -------k~l~~~~g~~~~k~~vFl~tD~qI~~E~fLedIN~lL~tge 162 (1650)
..++..+- ..+...|++|.+-+=.......-+-.+|..|.
T Consensus 539 gyvg~~~~g~L~~~v-~~~p~sVlllDEieka~~~v~~~LLq~ld~G~ 585 (758)
T PRK11034 539 GYVGFDQGGLLTDAV-IKHPHAVLLLDEIEKAHPDVFNLLLQVMDNGT 585 (758)
T ss_pred CcccccccchHHHHH-HhCCCcEEEeccHhhhhHHHHHHHHHHHhcCe
Confidence 11222222 22334677777766544444444444555553
No 31
>KOG1003|consensus
Probab=90.70 E-value=5.3 Score=42.85 Aligned_cols=106 Identities=17% Similarity=0.204 Sum_probs=80.4
Q ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Q psy4724 744 AMEVYDRVIKIVGPKKAKLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKL----- 818 (1650)
Q Consensus 744 A~~~Y~~v~~~v~P~~~~l~~~e~~l~~~~~~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl----- 818 (1650)
|-.+|..|.+.+.-+...|+.++.....+.........++..+...+..|...-+...++.+..+.++..+..||
T Consensus 79 adrK~eEVarkL~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKLkEaE~ 158 (205)
T KOG1003|consen 79 ADRKYEEVARKLVIIEGELERAEERAEAAESQSEELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKELTDKLKEAET 158 (205)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhh
Confidence 456788998888888888888888887777777777777777766666666666666666666666655555555
Q ss_pred --HHHHHHHhhhchhhccHHHHHHHHHHHHhhc
Q psy4724 819 --ERAEKLIGGLGGEKTRWSEASANLSKALVNC 849 (1650)
Q Consensus 819 --~ra~~Li~~L~~E~~rW~~~~~~~~~~~~~l 849 (1650)
+-|++-+..|..+..+|...+......+..+
T Consensus 159 rAE~aERsVakLeke~DdlE~kl~~~k~ky~~~ 191 (205)
T KOG1003|consen 159 RAEFAERRVAKLEKERDDLEEKLEEAKEKYEEA 191 (205)
T ss_pred hHHHHHHHHHHHcccHHHHHHhhHHHHHHHHHH
Confidence 6777899999999999999998888876554
No 32
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=90.69 E-value=1.1 Score=55.35 Aligned_cols=90 Identities=16% Similarity=0.193 Sum_probs=58.6
Q ss_pred CHHHHHHHHHHHHHHHhccCC--CC----------------CcceeehHHHHHHHHHHHHHhcCCCCceEEEecCCchhh
Q psy4724 28 NLDLLTEKINQYIVDYNTQNS--NK----------------PIDIVTFLYIIQHISRLCRILQQPKGHAMLITIGGSGAA 89 (1650)
Q Consensus 28 ~~~~l~~~l~~~l~~yN~~~~--~~----------------~m~lVlF~~ai~Hv~rI~Ril~~p~G~alLvGvgGSGrq 89 (1650)
++..+.+-|.+.+++|+...+ .. -=++++.++.++.+.+. |. .++|++|.|++|+||.
T Consensus 133 ~~~~~~~~l~~~i~~~~~~~~s~~~~~~p~~~~~~y~~~~~l~d~~i~e~~le~l~~~---L~-~~~~iil~GppGtGKT 208 (459)
T PRK11331 133 DYTRFASMLDNIINDYKLIFNSGKSVIPPMSKTESYCLEDALNDLFIPETTIETILKR---LT-IKKNIILQGPPGVGKT 208 (459)
T ss_pred CHHHHHHHHhhHHHHHHHhhccccccCCchhcccchhHHHHhhcccCCHHHHHHHHHH---Hh-cCCCEEEECCCCCCHH
Confidence 566788888888888864210 00 11456666677666443 33 3789999999999999
Q ss_pred hHHHHHH-HhcCC----ceEEEEEcccCCcchhHHHH
Q psy4724 90 EVTKLAT-FMNEY----VLFEIEILKTYGLTDWRDDL 121 (1650)
Q Consensus 90 SLtrLAa-fi~~~----~~fqIeitk~Yg~~~f~eDL 121 (1650)
++++.-| .+++. .+..++.+.+|+..+|.+..
T Consensus 209 ~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~ 245 (459)
T PRK11331 209 FVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGY 245 (459)
T ss_pred HHHHHHHHHhcCCcccceeeEEeecccccHHHHhccc
Confidence 9987544 44432 34556777778777665433
No 33
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=90.60 E-value=0.56 Score=55.55 Aligned_cols=93 Identities=14% Similarity=0.204 Sum_probs=54.9
Q ss_pred HHHHHHHHhcC---CCCceEEEecCCchhhhHHHHHHHh---c-CC-ceEEEEEcccCCcchhHHHHHHHHHHhc-----
Q psy4724 63 HISRLCRILQQ---PKGHAMLITIGGSGAAEVTKLATFM---N-EY-VLFEIEILKTYGLTDWRDDLCRLMKKSG----- 129 (1650)
Q Consensus 63 Hv~rI~Ril~~---p~G~alLvGvgGSGrqSLtrLAafi---~-~~-~~fqIeitk~Yg~~~f~eDLk~l~~~~g----- 129 (1650)
|+-+|...|.. +++.+.++|+||+||.+|++-++.- . .| .++-+...+.+...++.++|-..+....
T Consensus 4 ~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~ 83 (287)
T PF00931_consen 4 EIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSSISD 83 (287)
T ss_dssp HHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-STSSC
T ss_pred HHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeeccccccccccccccccccccccccccccccccccccccccccccc
Confidence 56677666655 6888999999999999999887744 2 23 3566788887777655555533322110
Q ss_pred -------------cCCCCCEEEEEecCCcCchhhHHHHHHH
Q psy4724 130 -------------GKDAKPMTFLFSDTQIQNEVFVEHINML 157 (1650)
Q Consensus 130 -------------~~~~k~~vFl~tD~qI~~E~fLedIN~l 157 (1650)
...++++.++|.| +.+...++.+-..
T Consensus 84 ~~~~~~~~~~l~~~L~~~~~LlVlDd--v~~~~~~~~l~~~ 122 (287)
T PF00931_consen 84 PKDIEELQDQLRELLKDKRCLLVLDD--VWDEEDLEELREP 122 (287)
T ss_dssp CSSHHHHHHHHHHHHCCTSEEEEEEE--E-SHHHH------
T ss_pred ccccccccccchhhhccccceeeeee--ecccccccccccc
Confidence 0135577888877 4444445444333
No 34
>PRK11637 AmiB activator; Provisional
Probab=90.59 E-value=2.5 Score=53.15 Aligned_cols=66 Identities=18% Similarity=0.194 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4724 758 KKAKLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKLERAEK 823 (1650)
Q Consensus 758 ~~~~l~~~e~~l~~~~~~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~~ 823 (1650)
.+.++++.++++...+.++.....++..++.+|..++.+++...++...++.+++.++.++..++.
T Consensus 52 l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~ 117 (428)
T PRK11637 52 IQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQ 117 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334333333334444444444444444444444444444444444444444444433333
No 35
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=90.54 E-value=3.7 Score=46.29 Aligned_cols=84 Identities=17% Similarity=0.224 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhhhchhhccHHHHHHHHHH
Q psy4724 767 ADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKLERAE--KLIGGLGGEKTRWSEASANLSK 844 (1650)
Q Consensus 767 ~~l~~~~~~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~--~Li~~L~~E~~rW~~~~~~~~~ 844 (1650)
..|..+++.+......+..++..++.++.++.....+.+.+..+++..+.++..+. +=..+|..|..-|+.....++.
T Consensus 31 ~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r~~~le~ 110 (239)
T COG1579 31 KALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINSLED 110 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333444444444444444444444444444444444444332222 2345666777778877777777
Q ss_pred HHhhch
Q psy4724 845 ALVNCI 850 (1650)
Q Consensus 845 ~~~~l~ 850 (1650)
.+..+.
T Consensus 111 el~~l~ 116 (239)
T COG1579 111 ELAELM 116 (239)
T ss_pred HHHHHH
Confidence 766653
No 36
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=90.53 E-value=0.99 Score=60.65 Aligned_cols=91 Identities=18% Similarity=0.246 Sum_probs=56.2
Q ss_pred HHHHhcCC-CCce-EEEecCCchhhhHHHHHH--HhcC------------------------CceEEEEEcccCCcchhH
Q psy4724 67 LCRILQQP-KGHA-MLITIGGSGAAEVTKLAT--FMNE------------------------YVLFEIEILKTYGLTDWR 118 (1650)
Q Consensus 67 I~Ril~~p-~G~a-lLvGvgGSGrqSLtrLAa--fi~~------------------------~~~fqIeitk~Yg~~~f~ 118 (1650)
|.+.|+.. -.|+ ||.|..|+||.|++|.-+ ++|. ++++.|.-..+.|+.+.|
T Consensus 27 L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~dv~eidaas~~~Vd~iR 106 (824)
T PRK07764 27 LSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSLDVTEIDAASHGGVDDAR 106 (824)
T ss_pred HHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCCcEEEecccccCCHHHHH
Confidence 55555553 3586 799999999999998763 3331 234445433344565555
Q ss_pred HHHHHHHHHhccCCCCCEEEEEecCCcCchhhHHHHHHHHhhhh
Q psy4724 119 DDLCRLMKKSGGKDAKPMTFLFSDTQIQNEVFVEHINMLLNTAR 162 (1650)
Q Consensus 119 eDLk~l~~~~g~~~~k~~vFl~tD~qI~~E~fLedIN~lL~tge 162 (1650)
+ |+.-..... ..++.-||+|.+.+-..+ +-.|.||.+=|
T Consensus 107 ~-l~~~~~~~p-~~~~~KV~IIDEad~lt~---~a~NaLLK~LE 145 (824)
T PRK07764 107 E-LRERAFFAP-AESRYKIFIIDEAHMVTP---QGFNALLKIVE 145 (824)
T ss_pred H-HHHHHHhch-hcCCceEEEEechhhcCH---HHHHHHHHHHh
Confidence 4 322222233 356677899999998765 55677877633
No 37
>KOG1969|consensus
Probab=90.37 E-value=0.9 Score=57.74 Aligned_cols=87 Identities=15% Similarity=0.211 Sum_probs=67.2
Q ss_pred CCCceEEEecCCchhhhHHHHHHHhcCCceEEEEEcccCCcchhHHHHHHHHHHhccC--CCCCEEEEEecCCcCchhhH
Q psy4724 74 PKGHAMLITIGGSGAAEVTKLATFMNEYVLFEIEILKTYGLTDWRDDLCRLMKKSGGK--DAKPMTFLFSDTQIQNEVFV 151 (1650)
Q Consensus 74 p~G~alLvGvgGSGrqSLtrLAafi~~~~~fqIeitk~Yg~~~f~eDLk~l~~~~g~~--~~k~~vFl~tD~qI~~E~fL 151 (1650)
|.-=+||.|+.|-||.||++.+|.=|||.+.+|.-+-.-+...+++=|-.+....-+. +++|+|+++.+=+-..-.+.
T Consensus 325 ~kKilLL~GppGlGKTTLAHViAkqaGYsVvEINASDeRt~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~~~~V 404 (877)
T KOG1969|consen 325 PKKILLLCGPPGLGKTTLAHVIAKQAGYSVVEINASDERTAPMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAPRAAV 404 (877)
T ss_pred ccceEEeecCCCCChhHHHHHHHHhcCceEEEecccccccHHHHHHHHHHHHhhccccccCCCcceEEEecccCCcHHHH
Confidence 3446899999999999999999999999999998887778888888887776655433 37999998876555544555
Q ss_pred HHHHHHHhh
Q psy4724 152 EHINMLLNT 160 (1650)
Q Consensus 152 edIN~lL~t 160 (1650)
.-|-.|+..
T Consensus 405 dvilslv~a 413 (877)
T KOG1969|consen 405 DVILSLVKA 413 (877)
T ss_pred HHHHHHHHh
Confidence 555555543
No 38
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.21 E-value=1.3 Score=57.06 Aligned_cols=91 Identities=18% Similarity=0.259 Sum_probs=56.1
Q ss_pred HHHHhcCC-CCce-EEEecCCchhhhHHHHHHH-hc-C------------------------CceEEEEEcccCCcchhH
Q psy4724 67 LCRILQQP-KGHA-MLITIGGSGAAEVTKLATF-MN-E------------------------YVLFEIEILKTYGLTDWR 118 (1650)
Q Consensus 67 I~Ril~~p-~G~a-lLvGvgGSGrqSLtrLAaf-i~-~------------------------~~~fqIeitk~Yg~~~f~ 118 (1650)
+.+.+... -+|| |+.|..|+||.|+++.-|- +. . .++..|.-+.+-|+.+.|
T Consensus 25 L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~~~dvieidaas~~gvd~iR 104 (584)
T PRK14952 25 LSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPGSIDVVELDAASHGGVDDTR 104 (584)
T ss_pred HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCCCceEEEeccccccCHHHHH
Confidence 44445543 4787 7899999999999987663 22 1 234444433334666555
Q ss_pred HHHHHHHHHhccCCCCCEEEEEecCCcCchhhHHHHHHHHhhhh
Q psy4724 119 DDLCRLMKKSGGKDAKPMTFLFSDTQIQNEVFVEHINMLLNTAR 162 (1650)
Q Consensus 119 eDLk~l~~~~g~~~~k~~vFl~tD~qI~~E~fLedIN~lL~tge 162 (1650)
+ |+.-..... ..+..-|+++.+.+-... +-.|.||.+=|
T Consensus 105 e-l~~~~~~~P-~~~~~KVvIIDEah~Lt~---~A~NALLK~LE 143 (584)
T PRK14952 105 E-LRDRAFYAP-AQSRYRIFIVDEAHMVTT---AGFNALLKIVE 143 (584)
T ss_pred H-HHHHHHhhh-hcCCceEEEEECCCcCCH---HHHHHHHHHHh
Confidence 4 433333333 345667889999887655 35688887743
No 39
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=90.14 E-value=5.4 Score=45.78 Aligned_cols=106 Identities=24% Similarity=0.264 Sum_probs=68.7
Q ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q psy4724 744 AMEVYDRVIKIVGPKKAKLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKLERA-- 821 (1650)
Q Consensus 744 A~~~Y~~v~~~v~P~~~~l~~~e~~l~~~~~~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra-- 821 (1650)
+-.+|..+...+.-....|+.++..+..+...+...+.+|..+...+..|+..-..+....+.++..+..+..++..|
T Consensus 111 ~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~ 190 (237)
T PF00261_consen 111 AERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAEN 190 (237)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777777777778888888888888888877777777777777776666666555555555554444444333
Q ss_pred ------------HHHHhhhchhhccHHHHHHHHHHHHhhc
Q psy4724 822 ------------EKLIGGLGGEKTRWSEASANLSKALVNC 849 (1650)
Q Consensus 822 ------------~~Li~~L~~E~~rW~~~~~~~~~~~~~l 849 (1650)
++-|..|..+-..|+.....++..+...
T Consensus 191 Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~eld~~ 230 (237)
T PF00261_consen 191 RAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEELDQT 230 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555566666666666665444
No 40
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.14 E-value=1 Score=56.89 Aligned_cols=92 Identities=15% Similarity=0.253 Sum_probs=56.9
Q ss_pred HHHHHHHhcCCCC-c-eEEEecCCchhhhHHHHHHHhcCC------------------------ceEEEEEcccCCcchh
Q psy4724 64 ISRLCRILQQPKG-H-AMLITIGGSGAAEVTKLATFMNEY------------------------VLFEIEILKTYGLTDW 117 (1650)
Q Consensus 64 v~rI~Ril~~p~G-~-alLvGvgGSGrqSLtrLAafi~~~------------------------~~fqIeitk~Yg~~~f 117 (1650)
+.++.+.+..++- | .||.|+.|+||.|++|+-|--.++ ++.++.-+.+.|..++
T Consensus 23 ~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~el~aa~~~gid~i 102 (472)
T PRK14962 23 KKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIELDAASNRGIDEI 102 (472)
T ss_pred HHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEEEeCcccCCHHHH
Confidence 4455666666554 6 589999999999999976554333 4666665556677766
Q ss_pred HHHHHHHHHHhccCCCCCEEEEEecCCcCchhhHHHHHHHHhh
Q psy4724 118 RDDLCRLMKKSGGKDAKPMTFLFSDTQIQNEVFVEHINMLLNT 160 (1650)
Q Consensus 118 ~eDLk~l~~~~g~~~~k~~vFl~tD~qI~~E~fLedIN~lL~t 160 (1650)
|+ ++......- ..++..++++.|.|-... +-.|.||.+
T Consensus 103 R~-i~~~~~~~p-~~~~~kVvIIDE~h~Lt~---~a~~~LLk~ 140 (472)
T PRK14962 103 RK-IRDAVGYRP-MEGKYKVYIIDEVHMLTK---EAFNALLKT 140 (472)
T ss_pred HH-HHHHHhhCh-hcCCeEEEEEEChHHhHH---HHHHHHHHH
Confidence 63 443333222 235566778887764322 224556655
No 41
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=89.91 E-value=1.1 Score=60.24 Aligned_cols=104 Identities=13% Similarity=0.108 Sum_probs=63.7
Q ss_pred hHHHHHHHHHHHHHhc-------CCCCceEEEecCCchhhhHHHHHHHhcCCceEEEEEcccCCcchhHHHH--------
Q psy4724 57 FLYIIQHISRLCRILQ-------QPKGHAMLITIGGSGAAEVTKLATFMNEYVLFEIEILKTYGLTDWRDDL-------- 121 (1650)
Q Consensus 57 F~~ai~Hv~rI~Ril~-------~p~G~alLvGvgGSGrqSLtrLAafi~~~~~fqIeitk~Yg~~~f~eDL-------- 121 (1650)
=++|++.|++.-+..+ .|.|+.||+|+.|+||..|+|.-|-..++.+..+.++- |....-...+
T Consensus 459 Q~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se-~~~~~~~~~lig~~~gyv 537 (731)
T TIGR02639 459 QDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSE-YMEKHTVSRLIGAPPGYV 537 (731)
T ss_pred cHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCch-hhhcccHHHHhcCCCCCc
Confidence 3678888777766543 48899999999999999999988887788777776431 2111000000
Q ss_pred ----HHHHHHhccCCCCCEEEEEecCCcCchhhHHHHHHHHhhhh
Q psy4724 122 ----CRLMKKSGGKDAKPMTFLFSDTQIQNEVFVEHINMLLNTAR 162 (1650)
Q Consensus 122 ----k~l~~~~g~~~~k~~vFl~tD~qI~~E~fLedIN~lL~tge 162 (1650)
...+..+- ..+...|++|.+-+=...++...+-.+|..|.
T Consensus 538 g~~~~~~l~~~~-~~~p~~VvllDEieka~~~~~~~Ll~~ld~g~ 581 (731)
T TIGR02639 538 GFEQGGLLTEAV-RKHPHCVLLLDEIEKAHPDIYNILLQVMDYAT 581 (731)
T ss_pred ccchhhHHHHHH-HhCCCeEEEEechhhcCHHHHHHHHHhhccCe
Confidence 11222222 12334677888876555555555555665554
No 42
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=89.86 E-value=0.88 Score=54.33 Aligned_cols=87 Identities=15% Similarity=0.238 Sum_probs=58.1
Q ss_pred HHHHHhcC-CCCceEEEecCCchhhhHHHHHHHhcCCceEEEEEcccCCcchhHHHHHHHHHHhccCCCCCEEEEEec--
Q psy4724 66 RLCRILQQ-PKGHAMLITIGGSGAAEVTKLATFMNEYVLFEIEILKTYGLTDWRDDLCRLMKKSGGKDAKPMTFLFSD-- 142 (1650)
Q Consensus 66 rI~Ril~~-p~G~alLvGvgGSGrqSLtrLAafi~~~~~fqIeitk~Yg~~~f~eDLk~l~~~~g~~~~k~~vFl~tD-- 142 (1650)
=|-|.+.. --+|++|-|+.|+||.||+|+-|--.++.+.++.-+ .-|+.+.|+=+.+.-...+ .|+++++++.+
T Consensus 38 ~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv-~~gvkdlr~i~e~a~~~~~--~gr~tiLflDEIH 114 (436)
T COG2256 38 PLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAV-TSGVKDLREIIEEARKNRL--LGRRTILFLDEIH 114 (436)
T ss_pred hHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhhCCceEEeccc-cccHHHHHHHHHHHHHHHh--cCCceEEEEehhh
Confidence 35666654 357999999999999999999999999998888655 4567655554443322223 24445444333
Q ss_pred --CCcCchhhHHHHH
Q psy4724 143 --TQIQNEVFVEHIN 155 (1650)
Q Consensus 143 --~qI~~E~fLedIN 155 (1650)
+--.++.||..|-
T Consensus 115 RfnK~QQD~lLp~vE 129 (436)
T COG2256 115 RFNKAQQDALLPHVE 129 (436)
T ss_pred hcChhhhhhhhhhhc
Confidence 2234567787773
No 43
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=89.83 E-value=1.2 Score=54.84 Aligned_cols=82 Identities=16% Similarity=0.167 Sum_probs=50.1
Q ss_pred CceE-EEecCCchhhhHHHHHH--HhcCC---------------------ceEEEEEc-ccCCcchhHHHHHHHHHHhcc
Q psy4724 76 GHAM-LITIGGSGAAEVTKLAT--FMNEY---------------------VLFEIEIL-KTYGLTDWRDDLCRLMKKSGG 130 (1650)
Q Consensus 76 G~al-LvGvgGSGrqSLtrLAa--fi~~~---------------------~~fqIeit-k~Yg~~~f~eDLk~l~~~~g~ 130 (1650)
+||+ +.|+.|+||.++++.-| .+|+. +++.++.. +++++.+.|+ +........
T Consensus 36 ~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~hpD~~~i~~~~~~i~i~~iR~-l~~~~~~~p- 113 (394)
T PRK07940 36 THAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTHPDVRVVAPEGLSIGVDEVRE-LVTIAARRP- 113 (394)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEeccccccCCHHHHHH-HHHHHHhCc-
Confidence 6755 77999999999998753 33431 23444443 3466665553 322222233
Q ss_pred CCCCCEEEEEecCCcCchhhHHHHHHHHhhhh
Q psy4724 131 KDAKPMTFLFSDTQIQNEVFVEHINMLLNTAR 162 (1650)
Q Consensus 131 ~~~k~~vFl~tD~qI~~E~fLedIN~lL~tge 162 (1650)
..++..|++|.|.+-.++. -.|.||.+=|
T Consensus 114 ~~~~~kViiIDead~m~~~---aanaLLk~LE 142 (394)
T PRK07940 114 STGRWRIVVIEDADRLTER---AANALLKAVE 142 (394)
T ss_pred ccCCcEEEEEechhhcCHH---HHHHHHHHhh
Confidence 3566778899998876553 3477887633
No 44
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=89.77 E-value=0.46 Score=48.73 Aligned_cols=87 Identities=13% Similarity=0.168 Sum_probs=54.4
Q ss_pred CCCCceEEEecCCchhhhHHHHHHHhc--------CCceEEEEEcccCCcchhHHHHHHHHH-----------------H
Q psy4724 73 QPKGHAMLITIGGSGAAEVTKLATFMN--------EYVLFEIEILKTYGLTDWRDDLCRLMK-----------------K 127 (1650)
Q Consensus 73 ~p~G~alLvGvgGSGrqSLtrLAafi~--------~~~~fqIeitk~Yg~~~f~eDLk~l~~-----------------~ 127 (1650)
+-+|+.+++|..||||.++.+-.+--. ...+.-+.....-+...|...|-..+. .
T Consensus 2 ~~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~ 81 (131)
T PF13401_consen 2 QSQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLID 81 (131)
T ss_dssp -----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHH
T ss_pred CCCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHH
Confidence 457899999999999999976555443 667777776655455555554432222 2
Q ss_pred hccCCCCCEEEEEecCCcC-chhhHHHHHHHHhh
Q psy4724 128 SGGKDAKPMTFLFSDTQIQ-NEVFVEHINMLLNT 160 (1650)
Q Consensus 128 ~g~~~~k~~vFl~tD~qI~-~E~fLedIN~lL~t 160 (1650)
.. ...+..++++.|.|-. +..+++.+..+.+.
T Consensus 82 ~l-~~~~~~~lviDe~~~l~~~~~l~~l~~l~~~ 114 (131)
T PF13401_consen 82 AL-DRRRVVLLVIDEADHLFSDEFLEFLRSLLNE 114 (131)
T ss_dssp HH-HHCTEEEEEEETTHHHHTHHHHHHHHHHTCS
T ss_pred HH-HhcCCeEEEEeChHhcCCHHHHHHHHHHHhC
Confidence 21 1122258889999988 88889998888774
No 45
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=89.77 E-value=1.1 Score=60.91 Aligned_cols=92 Identities=14% Similarity=0.221 Sum_probs=63.0
Q ss_pred CCCcceeehHHHHHHHHHHHHHh-cCCCCceEEEecCCchhhhHHHHHHH----------hcCCceEEEEEccc----CC
Q psy4724 49 NKPIDIVTFLYIIQHISRLCRIL-QQPKGHAMLITIGGSGAAEVTKLATF----------MNEYVLFEIEILKT----YG 113 (1650)
Q Consensus 49 ~~~m~lVlF~~ai~Hv~rI~Ril-~~p~G~alLvGvgGSGrqSLtrLAaf----------i~~~~~fqIeitk~----Yg 113 (1650)
..+++=|+=.+.. |-|+..|| |....|.+|||..|+||.++++..|. +.++.++.+.+..- -.
T Consensus 183 ~~~ld~~iGr~~e--i~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~ag~~~ 260 (852)
T TIGR03345 183 EGKIDPVLGRDDE--IRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAGASV 260 (852)
T ss_pred CCCCCcccCCHHH--HHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhccccc
Confidence 4467777777765 66666666 44567999999999999999987664 34566777766531 12
Q ss_pred cchhHHHHHHHHHHhccCCCCCEEEEEecC
Q psy4724 114 LTDWRDDLCRLMKKSGGKDAKPMTFLFSDT 143 (1650)
Q Consensus 114 ~~~f~eDLk~l~~~~g~~~~k~~vFl~tD~ 143 (1650)
.-+|-+.|+.++..+. ..++++++++.+-
T Consensus 261 ~ge~e~~lk~ii~e~~-~~~~~~ILfIDEi 289 (852)
T TIGR03345 261 KGEFENRLKSVIDEVK-ASPQPIILFIDEA 289 (852)
T ss_pred chHHHHHHHHHHHHHH-hcCCCeEEEEeCh
Confidence 4678899999998764 3345565544433
No 46
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=89.76 E-value=1.4 Score=56.56 Aligned_cols=102 Identities=15% Similarity=0.251 Sum_probs=63.2
Q ss_pred CCccccCCHHHHHHHHHHHHHHHhccCCCCCcceeehHHHHHHHHHHHHHhcCCCCceEEEecCCchhhhHHHHHHHhcC
Q psy4724 21 LVYDEIDNLDLLTEKINQYIVDYNTQNSNKPIDIVTFLYIIQHISRLCRILQQPKGHAMLITIGGSGAAEVTKLATFMNE 100 (1650)
Q Consensus 21 ~~Y~~~~~~~~l~~~l~~~l~~yN~~~~~~~m~lVlF~~ai~Hv~rI~Ril~~p~G~alLvGvgGSGrqSLtrLAafi~~ 100 (1650)
-.++++.-.+.+++.+.+.++.+.. + +...+ + -.+.|+| +||.|+.|+||.+|+|.-|.-++
T Consensus 52 ~~~~di~g~~~~k~~l~~~~~~l~~--~----------~~~~~---~--g~~~~~g-iLL~GppGtGKT~la~alA~~~~ 113 (495)
T TIGR01241 52 VTFKDVAGIDEAKEELMEIVDFLKN--P----------SKFTK---L--GAKIPKG-VLLVGPPGTGKTLLAKAVAGEAG 113 (495)
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHC--H----------HHHHh---c--CCCCCCc-EEEECCCCCCHHHHHHHHHHHcC
Confidence 3567777767676666665554321 1 00000 0 1344555 99999999999999999998888
Q ss_pred CceEEEEEcc----cCCcchhHHHHHHHHHHhccCCCCCEEEEEecCC
Q psy4724 101 YVLFEIEILK----TYGLTDWRDDLCRLMKKSGGKDAKPMTFLFSDTQ 144 (1650)
Q Consensus 101 ~~~fqIeitk----~Yg~~~f~eDLk~l~~~~g~~~~k~~vFl~tD~q 144 (1650)
..++.+..+. ..|.. ...++.++..+- ...|++++|.|-+
T Consensus 114 ~~~~~i~~~~~~~~~~g~~--~~~l~~~f~~a~--~~~p~Il~iDEid 157 (495)
T TIGR01241 114 VPFFSISGSDFVEMFVGVG--ASRVRDLFEQAK--KNAPCIIFIDEID 157 (495)
T ss_pred CCeeeccHHHHHHHHhccc--HHHHHHHHHHHH--hcCCCEEEEechh
Confidence 8888775331 12222 245667777664 4567777666543
No 47
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=89.59 E-value=1.7 Score=52.40 Aligned_cols=89 Identities=9% Similarity=0.022 Sum_probs=53.8
Q ss_pred eeehHHHHHHHHHHHHHhcCCCCceEE-EecCCchhhhHHHHHHHhcCCceEEEEEcccCCcchhHHHHHHHHHHhccCC
Q psy4724 54 IVTFLYIIQHISRLCRILQQPKGHAML-ITIGGSGAAEVTKLATFMNEYVLFEIEILKTYGLTDWRDDLCRLMKKSGGKD 132 (1650)
Q Consensus 54 lVlF~~ai~Hv~rI~Ril~~p~G~alL-vGvgGSGrqSLtrLAafi~~~~~fqIeitk~Yg~~~f~eDLk~l~~~~g~~~ 132 (1650)
+|.=+++.+++..... +....|++| .|..|+||.+|++..+.-.+..+..+..+.+ +....++.++....... ..
T Consensus 23 ~~~~~~~~~~l~~~~~--~~~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~~-~~~~i~~~l~~~~~~~~-~~ 98 (316)
T PHA02544 23 CILPAADKETFKSIVK--KGRIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSDC-RIDFVRNRLTRFASTVS-LT 98 (316)
T ss_pred hcCcHHHHHHHHHHHh--cCCCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCcc-cHHHHHHHHHHHHHhhc-cc
Confidence 4444555554444433 111236777 6999999999999877666777777766542 23344444554444333 33
Q ss_pred CCCEEEEEecCCcC
Q psy4724 133 AKPMTFLFSDTQIQ 146 (1650)
Q Consensus 133 ~k~~vFl~tD~qI~ 146 (1650)
+.+.|+++.|.+-.
T Consensus 99 ~~~~vliiDe~d~l 112 (316)
T PHA02544 99 GGGKVIIIDEFDRL 112 (316)
T ss_pred CCCeEEEEECcccc
Confidence 45678888887644
No 48
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.51 E-value=1.6 Score=55.81 Aligned_cols=91 Identities=20% Similarity=0.303 Sum_probs=54.8
Q ss_pred HHHHhcCCCC-ce-EEEecCCchhhhHHHHHHHhcCC------------------------ceEEEEEcccCCcchhHHH
Q psy4724 67 LCRILQQPKG-HA-MLITIGGSGAAEVTKLATFMNEY------------------------VLFEIEILKTYGLTDWRDD 120 (1650)
Q Consensus 67 I~Ril~~p~G-~a-lLvGvgGSGrqSLtrLAafi~~~------------------------~~fqIeitk~Yg~~~f~eD 120 (1650)
+.+.++..++ |+ |+.|..|+||.|++|.-|-.-.| ++..+.....-|..+.++=
T Consensus 28 L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlieidaas~~gvd~ir~i 107 (546)
T PRK14957 28 LVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEIDAASRTGVEETKEI 107 (546)
T ss_pred HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEeecccccCHHHHHHH
Confidence 5566666554 64 68999999999999877642222 4555544445566555443
Q ss_pred HHHHHHHhccCCCCCEEEEEecCCcCchhhHHHHHHHHhhhh
Q psy4724 121 LCRLMKKSGGKDAKPMTFLFSDTQIQNEVFVEHINMLLNTAR 162 (1650)
Q Consensus 121 Lk~l~~~~g~~~~k~~vFl~tD~qI~~E~fLedIN~lL~tge 162 (1650)
+.. +.... ..++..|+++.|.+-.+. +-.|.||.+=|
T Consensus 108 i~~-~~~~p-~~g~~kViIIDEa~~ls~---~a~naLLK~LE 144 (546)
T PRK14957 108 LDN-IQYMP-SQGRYKVYLIDEVHMLSK---QSFNALLKTLE 144 (546)
T ss_pred HHH-HHhhh-hcCCcEEEEEechhhccH---HHHHHHHHHHh
Confidence 322 22222 345677889999765443 24566776633
No 49
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=89.39 E-value=1.5 Score=57.45 Aligned_cols=101 Identities=23% Similarity=0.330 Sum_probs=59.8
Q ss_pred eeehHHHHHHHHHHHHHhcCCC-Cce-EEEecCCchhhhHHHHHHHhcCC---------------------ceEEEEEcc
Q psy4724 54 IVTFLYIIQHISRLCRILQQPK-GHA-MLITIGGSGAAEVTKLATFMNEY---------------------VLFEIEILK 110 (1650)
Q Consensus 54 lVlF~~ai~Hv~rI~Ril~~p~-G~a-lLvGvgGSGrqSLtrLAafi~~~---------------------~~fqIeitk 110 (1650)
+|-=+.++++ +.+.++..+ .|| |+.|+.|.||.+++|.-|-.-.| +++.+.-..
T Consensus 20 IiGQe~~v~~---L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dvieidaas 96 (725)
T PRK07133 20 IVGQDHIVQT---LKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDIIEMDAAS 96 (725)
T ss_pred hcCcHHHHHH---HHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEEEEeccc
Confidence 4433444443 455555543 687 78999999999999876533211 233343322
Q ss_pred cCCcchhHHHHHHHHHHhccCCCCCEEEEEecCCcCchhhHHHHHHHHhhhh
Q psy4724 111 TYGLTDWRDDLCRLMKKSGGKDAKPMTFLFSDTQIQNEVFVEHINMLLNTAR 162 (1650)
Q Consensus 111 ~Yg~~~f~eDLk~l~~~~g~~~~k~~vFl~tD~qI~~E~fLedIN~lL~tge 162 (1650)
+-|..+.|+ |..-+.... ..++.-|+++.+.+.... +-.|.||-+=|
T Consensus 97 n~~vd~IRe-Lie~~~~~P-~~g~~KV~IIDEa~~LT~---~A~NALLKtLE 143 (725)
T PRK07133 97 NNGVDEIRE-LIENVKNLP-TQSKYKIYIIDEVHMLSK---SAFNALLKTLE 143 (725)
T ss_pred cCCHHHHHH-HHHHHHhch-hcCCCEEEEEEChhhCCH---HHHHHHHHHhh
Confidence 345555444 333333334 356778999999887654 35678887644
No 50
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=89.10 E-value=6.5 Score=47.79 Aligned_cols=115 Identities=19% Similarity=0.263 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhh----ccH
Q psy4724 760 AKLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKLERAEKLIGGLGGEK----TRW 835 (1650)
Q Consensus 760 ~~l~~~e~~l~~~~~~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~~Li~~L~~E~----~rW 835 (1650)
+++...+.+++..+..+...+++.+.++..|..++.+......+..+.+.+.+..+.++..+..-+..|..++ .+-
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~r~qr~~L 117 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQEREQRRRL 117 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666666666666666666666666666666666666666666666666667677776665 122
Q ss_pred HHHHHHHHH-------HHhhchhHHHHHHHHHHhcCCCCHHHHHHH
Q psy4724 836 SEASANLSK-------ALVNCIGDILICAGIITYLGAFTVDFRNDL 874 (1650)
Q Consensus 836 ~~~~~~~~~-------~~~~l~Gd~ll~aa~i~Y~G~f~~~~R~~l 874 (1650)
...+.-+.. .+.-...|+.=+--...|+|.++++-++.+
T Consensus 118 a~~L~A~~r~g~~p~~~ll~~~eda~~~~R~ai~~~~l~~~~~~~i 163 (420)
T COG4942 118 AEQLAALQRSGRNPPPALLVSPEDAQRSVRLAIYYGALNPARAERI 163 (420)
T ss_pred HHHHHHHHhccCCCCchhhcChhhhhHHHHHHHHHHHhhHHHHHHH
Confidence 222222222 122335666767777788888887766443
No 51
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=88.90 E-value=1.1 Score=53.13 Aligned_cols=89 Identities=11% Similarity=0.169 Sum_probs=58.7
Q ss_pred HHHHHHhcCCCCceEEEecCCchhhhHHHHHHHhcCCceEEEEEcccCCc-----------------chhHHHHHHHHHH
Q psy4724 65 SRLCRILQQPKGHAMLITIGGSGAAEVTKLATFMNEYVLFEIEILKTYGL-----------------TDWRDDLCRLMKK 127 (1650)
Q Consensus 65 ~rI~Ril~~p~G~alLvGvgGSGrqSLtrLAafi~~~~~fqIeitk~Yg~-----------------~~f~eDLk~l~~~ 127 (1650)
..|..-| .+++|.||.|+.|+||.||++.-|-..++.+..|..+..-.. ..|++.. +-.
T Consensus 55 ~~vl~~l-~~~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~Gp---L~~ 130 (327)
T TIGR01650 55 KAICAGF-AYDRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGI---LPW 130 (327)
T ss_pred HHHHHHH-hcCCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCc---chh
Confidence 3455666 468999999999999999999888888898888876644222 2333322 222
Q ss_pred hccCCCCCEEEEEecCCcCchhhHHHHHHHHhh
Q psy4724 128 SGGKDAKPMTFLFSDTQIQNEVFVEHINMLLNT 160 (1650)
Q Consensus 128 ~g~~~~k~~vFl~tD~qI~~E~fLedIN~lL~t 160 (1650)
|- ..+.++++.+=.-...+-+.-+|.+|..
T Consensus 131 A~---~~g~illlDEin~a~p~~~~~L~~lLE~ 160 (327)
T TIGR01650 131 AL---QHNVALCFDEYDAGRPDVMFVIQRVLEA 160 (327)
T ss_pred HH---hCCeEEEechhhccCHHHHHHHHHHhcc
Confidence 21 2335666766665566666667777753
No 52
>KOG0743|consensus
Probab=88.90 E-value=0.64 Score=56.38 Aligned_cols=54 Identities=20% Similarity=0.437 Sum_probs=40.9
Q ss_pred CCceEEEecCCchhhhH-HHHHHHhcCCceEEEEEcccCCcchhHHHHHHHHHHhccCCCCCEE
Q psy4724 75 KGHAMLITIGGSGAAEV-TKLATFMNEYVLFEIEILKTYGLTDWRDDLCRLMKKSGGKDAKPMT 137 (1650)
Q Consensus 75 ~G~alLvGvgGSGrqSL-trLAafi~~~~~fqIeitk~Yg~~~f~eDLk~l~~~~g~~~~k~~v 137 (1650)
||- ||-|++|+||.|+ +-+|-|+ +|+++-+++|...+-. ||++||..+ .++.++
T Consensus 236 RGY-LLYGPPGTGKSS~IaAmAn~L-~ydIydLeLt~v~~n~----dLr~LL~~t---~~kSIi 290 (457)
T KOG0743|consen 236 RGY-LLYGPPGTGKSSFIAAMANYL-NYDIYDLELTEVKLDS----DLRHLLLAT---PNKSIL 290 (457)
T ss_pred ccc-eeeCCCCCCHHHHHHHHHhhc-CCceEEeeeccccCcH----HHHHHHHhC---CCCcEE
Confidence 564 6999999999998 5566666 9999999999555544 588888854 355544
No 53
>CHL00176 ftsH cell division protein; Validated
Probab=88.81 E-value=1.4 Score=57.61 Aligned_cols=88 Identities=17% Similarity=0.252 Sum_probs=58.9
Q ss_pred eeehHHHHHHHHHHHHHhcCCCC----------ceEEEecCCchhhhHHHHHHHhcCCceEEEEEcc----cCCcchhHH
Q psy4724 54 IVTFLYIIQHISRLCRILQQPKG----------HAMLITIGGSGAAEVTKLATFMNEYVLFEIEILK----TYGLTDWRD 119 (1650)
Q Consensus 54 lVlF~~ai~Hv~rI~Ril~~p~G----------~alLvGvgGSGrqSLtrLAafi~~~~~fqIeitk----~Yg~~~f~e 119 (1650)
++--+++.+.+..+.+.++.|.- ++||+|+.|+||.+|+|--|.-++..++.+..+. ..|.. ..
T Consensus 185 v~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~~~g~~--~~ 262 (638)
T CHL00176 185 IAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMFVGVG--AA 262 (638)
T ss_pred ccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHHhhhhh--HH
Confidence 33345566666666666655432 6999999999999999999888888888775331 01111 12
Q ss_pred HHHHHHHHhccCCCCCEEEEEecCCc
Q psy4724 120 DLCRLMKKSGGKDAKPMTFLFSDTQI 145 (1650)
Q Consensus 120 DLk~l~~~~g~~~~k~~vFl~tD~qI 145 (1650)
.++.++..+- .+.|+++++.|-+-
T Consensus 263 ~vr~lF~~A~--~~~P~ILfIDEID~ 286 (638)
T CHL00176 263 RVRDLFKKAK--ENSPCIVFIDEIDA 286 (638)
T ss_pred HHHHHHHHHh--cCCCcEEEEecchh
Confidence 3556677664 57888888887653
No 54
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=88.72 E-value=0.92 Score=61.02 Aligned_cols=86 Identities=9% Similarity=0.177 Sum_probs=58.8
Q ss_pred ceeehHHHHHHHHHHHHHhcC-CCCceEEEecCCchhhhHHHHHHHhc----------CCceEEEEEcccC----Ccchh
Q psy4724 53 DIVTFLYIIQHISRLCRILQQ-PKGHAMLITIGGSGAAEVTKLATFMN----------EYVLFEIEILKTY----GLTDW 117 (1650)
Q Consensus 53 ~lVlF~~ai~Hv~rI~Ril~~-p~G~alLvGvgGSGrqSLtrLAafi~----------~~~~fqIeitk~Y----g~~~f 117 (1650)
++|=-++-|+ |+.++|.. -..|.+|+|..|+||.++++.-|.-. ++.++.+.++.-. -.-+|
T Consensus 183 ~~igr~~ei~---~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~a~~~~~g~~ 259 (731)
T TIGR02639 183 PLIGREDELE---RTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLLAGTKYRGDF 259 (731)
T ss_pred cccCcHHHHH---HHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHhhhccccchH
Confidence 3444455555 56677744 46699999999999999998777654 7889988755322 12478
Q ss_pred HHHHHHHHHHhccCCCCCEEEEEecC
Q psy4724 118 RDDLCRLMKKSGGKDAKPMTFLFSDT 143 (1650)
Q Consensus 118 ~eDLk~l~~~~g~~~~k~~vFl~tD~ 143 (1650)
.+.|++++..+- .++++++++.+-
T Consensus 260 e~~l~~i~~~~~--~~~~~ILfiDEi 283 (731)
T TIGR02639 260 EERLKAVVSEIE--KEPNAILFIDEI 283 (731)
T ss_pred HHHHHHHHHHHh--ccCCeEEEEecH
Confidence 899999998764 234555444443
No 55
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=88.62 E-value=1.5 Score=52.49 Aligned_cols=86 Identities=12% Similarity=0.033 Sum_probs=63.4
Q ss_pred eehHHHHHHHHHHHHH---hcCCCCceEEEecCCchhhhHHHHHHHhcCCceEEEE----EcccCCcchhHHHHHHHHHH
Q psy4724 55 VTFLYIIQHISRLCRI---LQQPKGHAMLITIGGSGAAEVTKLATFMNEYVLFEIE----ILKTYGLTDWRDDLCRLMKK 127 (1650)
Q Consensus 55 VlF~~ai~Hv~rI~Ri---l~~p~G~alLvGvgGSGrqSLtrLAafi~~~~~fqIe----itk~Yg~~~f~eDLk~l~~~ 127 (1650)
.|.+.++-|+.+=.=. ++-|+| ++|-|+.|+||..++|++|--+|..++.+. .++.+|.++ .-|+.+|..
T Consensus 126 ~f~dk~~~hi~kn~l~~~~ik~Plg-llL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vGEsE--k~IR~~F~~ 202 (413)
T PLN00020 126 AFMDKVAVHIAKNFLALPNIKVPLI-LGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAGEPG--KLIRQRYRE 202 (413)
T ss_pred HHHHHHHHHHHhhhhhccCCCCCeE-EEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCCcHH--HHHHHHHHH
Confidence 3455566566553322 466777 457999999999999999999999998886 346788875 458888887
Q ss_pred hcc---CCCCCEEEEEecC
Q psy4724 128 SGG---KDAKPMTFLFSDT 143 (1650)
Q Consensus 128 ~g~---~~~k~~vFl~tD~ 143 (1650)
|.- .+++|+|++|.|=
T Consensus 203 A~~~a~~~~aPcVLFIDEI 221 (413)
T PLN00020 203 AADIIKKKGKMSCLFINDL 221 (413)
T ss_pred HHHHhhccCCCeEEEEehh
Confidence 752 2578988887763
No 56
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.40 E-value=2 Score=55.23 Aligned_cols=88 Identities=15% Similarity=0.269 Sum_probs=53.4
Q ss_pred HHHhcC-CCCce-EEEecCCchhhhHHHHHHHhcCC------------------------ceEEEEEcccCCcchhHHHH
Q psy4724 68 CRILQQ-PKGHA-MLITIGGSGAAEVTKLATFMNEY------------------------VLFEIEILKTYGLTDWRDDL 121 (1650)
Q Consensus 68 ~Ril~~-p~G~a-lLvGvgGSGrqSLtrLAafi~~~------------------------~~fqIeitk~Yg~~~f~eDL 121 (1650)
.+.+.. --+|+ |+.|..|+||.|++|.-|-.-.| +++.+.-+.+-++ +|+
T Consensus 29 ~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ei~~~~~~~v----d~i 104 (527)
T PRK14969 29 TNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIEVDAASNTQV----DAM 104 (527)
T ss_pred HHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeEeeccccCCH----HHH
Confidence 333433 34688 79999999999999987544332 3444543334444 445
Q ss_pred HHHHHHhcc--CCCCCEEEEEecCCcCchhhHHHHHHHHhhhh
Q psy4724 122 CRLMKKSGG--KDAKPMTFLFSDTQIQNEVFVEHINMLLNTAR 162 (1650)
Q Consensus 122 k~l~~~~g~--~~~k~~vFl~tD~qI~~E~fLedIN~lL~tge 162 (1650)
+.++..+-. ..++.-|+++.|.+-... +-.|.||.+=|
T Consensus 105 r~l~~~~~~~p~~~~~kVvIIDEad~ls~---~a~naLLK~LE 144 (527)
T PRK14969 105 RELLDNAQYAPTRGRFKVYIIDEVHMLSK---SAFNAMLKTLE 144 (527)
T ss_pred HHHHHHHhhCcccCCceEEEEcCcccCCH---HHHHHHHHHHh
Confidence 444443321 346677899999765433 35688887743
No 57
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=88.25 E-value=2.3 Score=55.28 Aligned_cols=88 Identities=17% Similarity=0.327 Sum_probs=51.9
Q ss_pred HHHHhcCCC-Cce-EEEecCCchhhhHHHHHHHhcCC------------------------ceEEEEEcccCCcchhHHH
Q psy4724 67 LCRILQQPK-GHA-MLITIGGSGAAEVTKLATFMNEY------------------------VLFEIEILKTYGLTDWRDD 120 (1650)
Q Consensus 67 I~Ril~~p~-G~a-lLvGvgGSGrqSLtrLAafi~~~------------------------~~fqIeitk~Yg~~~f~eD 120 (1650)
+.+.|...+ +|+ ||.|..|+||.+++|.-+--..| ++.+|.-..+.|+. +
T Consensus 28 L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~DvlEidaAs~~gVd----~ 103 (709)
T PRK08691 28 LQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDLLEIDAASNTGID----N 103 (709)
T ss_pred HHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccceEEEeccccCCHH----H
Confidence 444455444 676 99999999999999855442111 34445445555654 4
Q ss_pred HHHHHHHhcc--CCCCCEEEEEecCCcCchhhHHHHHHHHhhh
Q psy4724 121 LCRLMKKSGG--KDAKPMTFLFSDTQIQNEVFVEHINMLLNTA 161 (1650)
Q Consensus 121 Lk~l~~~~g~--~~~k~~vFl~tD~qI~~E~fLedIN~lL~tg 161 (1650)
++.++..+-. ..++.-|+++.|.+-... +-+|-||.+=
T Consensus 104 IRelle~a~~~P~~gk~KVIIIDEad~Ls~---~A~NALLKtL 143 (709)
T PRK08691 104 IREVLENAQYAPTAGKYKVYIIDEVHMLSK---SAFNAMLKTL 143 (709)
T ss_pred HHHHHHHHHhhhhhCCcEEEEEECccccCH---HHHHHHHHHH
Confidence 4444443210 134567888998775543 2356677663
No 58
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.10 E-value=6.9 Score=34.29 Aligned_cols=69 Identities=17% Similarity=0.282 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhccHHHHHHH
Q psy4724 762 LAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKLERAEKLIGGLGGEKTRWSEASAN 841 (1650)
Q Consensus 762 l~~~e~~l~~~~~~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~~Li~~L~~E~~rW~~~~~~ 841 (1650)
+++++++...|-....-.+.++.++.++-+.|+.+...+....+.|+.+. ..|..|..-|++.+..
T Consensus 6 ~ekLE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~en--------------eqlk~e~~~WQerlrs 71 (79)
T COG3074 6 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALEREN--------------EQLKEEQNGWQERLRA 71 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555555555444444444444443 4566778888887665
Q ss_pred HHH
Q psy4724 842 LSK 844 (1650)
Q Consensus 842 ~~~ 844 (1650)
+-.
T Consensus 72 LLG 74 (79)
T COG3074 72 LLG 74 (79)
T ss_pred HHh
Confidence 433
No 59
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.10 E-value=2.1 Score=54.56 Aligned_cols=82 Identities=20% Similarity=0.308 Sum_probs=52.0
Q ss_pred CCce-EEEecCCchhhhHHHHHHHhcCC-----------------------ceEEEEEcccCCcchhHHHHHHHHHHhcc
Q psy4724 75 KGHA-MLITIGGSGAAEVTKLATFMNEY-----------------------VLFEIEILKTYGLTDWRDDLCRLMKKSGG 130 (1650)
Q Consensus 75 ~G~a-lLvGvgGSGrqSLtrLAafi~~~-----------------------~~fqIeitk~Yg~~~f~eDLk~l~~~~g~ 130 (1650)
-+|+ |+.|..|+||.|++|.-|--..| ++.+|..+.+.+..+.|+ ++.-.....
T Consensus 35 l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv~el~~~~~~~vd~iR~-l~~~~~~~p- 112 (504)
T PRK14963 35 LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDVLEIDAASNNSVEDVRD-LREKVLLAP- 112 (504)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCceEEecccccCCHHHHHH-HHHHHhhcc-
Confidence 3688 99999999999999866533221 366666555666665554 433333333
Q ss_pred CCCCCEEEEEecCCcCchhhHHHHHHHHhhh
Q psy4724 131 KDAKPMTFLFSDTQIQNEVFVEHINMLLNTA 161 (1650)
Q Consensus 131 ~~~k~~vFl~tD~qI~~E~fLedIN~lL~tg 161 (1650)
..+++.++++.+.+-... +.+|.||.+=
T Consensus 113 ~~~~~kVVIIDEad~ls~---~a~naLLk~L 140 (504)
T PRK14963 113 LRGGRKVYILDEAHMMSK---SAFNALLKTL 140 (504)
T ss_pred ccCCCeEEEEECccccCH---HHHHHHHHHH
Confidence 345677888988875443 3456676663
No 60
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=88.08 E-value=1.6 Score=58.07 Aligned_cols=85 Identities=14% Similarity=0.237 Sum_probs=53.1
Q ss_pred HHHHHHHHHHhcCCC-CceEEEecCCchhhhHHHHHHHhcCCceEEEEEcccCCcchhHHHHHHHHHHhccCCCCCEEEE
Q psy4724 61 IQHISRLCRILQQPK-GHAMLITIGGSGAAEVTKLATFMNEYVLFEIEILKTYGLTDWRDDLCRLMKKSGGKDAKPMTFL 139 (1650)
Q Consensus 61 i~Hv~rI~Ril~~p~-G~alLvGvgGSGrqSLtrLAafi~~~~~fqIeitk~Yg~~~f~eDLk~l~~~~g~~~~k~~vFl 139 (1650)
+.....+.|++...+ +|++|.|.+|+||.||++..+.-.+..+..+.-+ ..+..+.++-++..-.... ..++..+++
T Consensus 37 i~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~-~~~i~dir~~i~~a~~~l~-~~~~~~IL~ 114 (725)
T PRK13341 37 LGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAV-LAGVKDLRAEVDRAKERLE-RHGKRTILF 114 (725)
T ss_pred hhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhh-hhhhHHHHHHHHHHHHHhh-hcCCceEEE
Confidence 333345666776544 5999999999999999999888776655554332 2355555554433321112 224567788
Q ss_pred EecCCcCc
Q psy4724 140 FSDTQIQN 147 (1650)
Q Consensus 140 ~tD~qI~~ 147 (1650)
+.|-+-.+
T Consensus 115 IDEIh~Ln 122 (725)
T PRK13341 115 IDEVHRFN 122 (725)
T ss_pred EeChhhCC
Confidence 88877543
No 61
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.82 E-value=2.5 Score=54.68 Aligned_cols=92 Identities=18% Similarity=0.270 Sum_probs=57.1
Q ss_pred HHHHHHhcCCC-CceE-EEecCCchhhhHHHHHHHhcCCc------------------------eEEEEEcccCCcchhH
Q psy4724 65 SRLCRILQQPK-GHAM-LITIGGSGAAEVTKLATFMNEYV------------------------LFEIEILKTYGLTDWR 118 (1650)
Q Consensus 65 ~rI~Ril~~p~-G~al-LvGvgGSGrqSLtrLAafi~~~~------------------------~fqIeitk~Yg~~~f~ 118 (1650)
..|.|.+...+ .|++ |.|..|+||.|++|+-|-...|. +.+|.-..+-++.+.|
T Consensus 26 ~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g~hpDv~eId~a~~~~Id~iR 105 (624)
T PRK14959 26 AILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQGMHVDVVEIDGASNRGIDDAK 105 (624)
T ss_pred HHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcCCCCceEEEecccccCHHHHH
Confidence 44566666655 4666 58999999999999776554442 4555433344555444
Q ss_pred HHHHHHHHHhccCCCCCEEEEEecCCcCchhhHHHHHHHHhhh
Q psy4724 119 DDLCRLMKKSGGKDAKPMTFLFSDTQIQNEVFVEHINMLLNTA 161 (1650)
Q Consensus 119 eDLk~l~~~~g~~~~k~~vFl~tD~qI~~E~fLedIN~lL~tg 161 (1650)
+ |+..+.... ..++..++++.+.|-... +..|.||.+=
T Consensus 106 ~-L~~~~~~~p-~~g~~kVIIIDEad~Lt~---~a~naLLk~L 143 (624)
T PRK14959 106 R-LKEAIGYAP-MEGRYKVFIIDEAHMLTR---EAFNALLKTL 143 (624)
T ss_pred H-HHHHHHhhh-hcCCceEEEEEChHhCCH---HHHHHHHHHh
Confidence 3 433343333 456677888988876543 3457777663
No 62
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=87.72 E-value=1.9 Score=51.73 Aligned_cols=90 Identities=18% Similarity=0.289 Sum_probs=57.9
Q ss_pred HHHHhcCC-CCce-EEEecCCchhhhHHHHHHH--hcC-----C-ceEEEEE--cccCCcchhHHHHHHHHHHhccCCCC
Q psy4724 67 LCRILQQP-KGHA-MLITIGGSGAAEVTKLATF--MNE-----Y-VLFEIEI--LKTYGLTDWRDDLCRLMKKSGGKDAK 134 (1650)
Q Consensus 67 I~Ril~~p-~G~a-lLvGvgGSGrqSLtrLAaf--i~~-----~-~~fqIei--tk~Yg~~~f~eDLk~l~~~~g~~~~k 134 (1650)
+.+.+.+. -.|| |+.|..|+||.+|++..+- +|. + +++.+.. .+++++.+.|+-+..+.. .. ..++
T Consensus 16 l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~ir~~~~~~~~-~p-~~~~ 93 (313)
T PRK05564 16 IKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDDIRNIIEEVNK-KP-YEGD 93 (313)
T ss_pred HHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHHHHHHHHHHhc-Cc-ccCC
Confidence 45556554 4588 7899999999999976654 232 1 4445543 355677777765544433 34 4677
Q ss_pred CEEEEEecCCcCchhhHHHHHHHHhhh
Q psy4724 135 PMTFLFSDTQIQNEVFVEHINMLLNTA 161 (1650)
Q Consensus 135 ~~vFl~tD~qI~~E~fLedIN~lL~tg 161 (1650)
.-|+++.|.+-.++ +--|.||.|=
T Consensus 94 ~kv~iI~~ad~m~~---~a~naLLK~L 117 (313)
T PRK05564 94 KKVIIIYNSEKMTE---QAQNAFLKTI 117 (313)
T ss_pred ceEEEEechhhcCH---HHHHHHHHHh
Confidence 78889999754333 3458888773
No 63
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=87.66 E-value=1.2 Score=55.14 Aligned_cols=78 Identities=15% Similarity=0.185 Sum_probs=49.0
Q ss_pred cCCHHHHHHHHHHHHHHHhccCCCCCcceeehHHHHHHHHHHHHHh------cCCCCceEEEecCCchhhhHHHHHHHhc
Q psy4724 26 IDNLDLLTEKINQYIVDYNTQNSNKPIDIVTFLYIIQHISRLCRIL------QQPKGHAMLITIGGSGAAEVTKLATFMN 99 (1650)
Q Consensus 26 ~~~~~~l~~~l~~~l~~yN~~~~~~~m~lVlF~~ai~Hv~rI~Ril------~~p~G~alLvGvgGSGrqSLtrLAafi~ 99 (1650)
+++...+.+.|.++.---. ..--++-..+..|..||.--. ..|.+|.||+|+.||||.+|+|.-|-..
T Consensus 59 ~~~p~~i~~~L~~~ViGq~------~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l 132 (412)
T PRK05342 59 LPTPKEIKAHLDQYVIGQE------RAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARIL 132 (412)
T ss_pred CCCHHHHHHHHhhHeeChH------HHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHh
Confidence 5555555555444422111 122334455566777774322 2468999999999999999999877666
Q ss_pred CCceEEEEEc
Q psy4724 100 EYVLFEIEIL 109 (1650)
Q Consensus 100 ~~~~fqIeit 109 (1650)
+..+..+..+
T Consensus 133 ~~pf~~id~~ 142 (412)
T PRK05342 133 DVPFAIADAT 142 (412)
T ss_pred CCCceecchh
Confidence 7666666543
No 64
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=87.59 E-value=2.4 Score=51.37 Aligned_cols=87 Identities=7% Similarity=0.042 Sum_probs=55.5
Q ss_pred eeehHHHHHHHHHHHHHh---cCCCCceEEEecCCchhhhHHHHHHHhcCCceEEEEEcccCCcchhHHHHHHHHHHhcc
Q psy4724 54 IVTFLYIIQHISRLCRIL---QQPKGHAMLITIGGSGAAEVTKLATFMNEYVLFEIEILKTYGLTDWRDDLCRLMKKSGG 130 (1650)
Q Consensus 54 lVlF~~ai~Hv~rI~Ril---~~p~G~alLvGvgGSGrqSLtrLAafi~~~~~fqIeitk~Yg~~~f~eDLk~l~~~~g~ 130 (1650)
+|--++.++.+..+-... ..|.+|+|+.|+.|+||.+|++..|.-.+..+..+... ..+-..|+..++...+
T Consensus 27 ~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~----~~~~~~~l~~~l~~l~- 101 (328)
T PRK00080 27 FIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGP----ALEKPGDLAAILTNLE- 101 (328)
T ss_pred hcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecc----cccChHHHHHHHHhcc-
Confidence 333344444443333222 34567999999999999999999999888776554322 1122457777766543
Q ss_pred CCCCCEEEEEecCCcCch
Q psy4724 131 KDAKPMTFLFSDTQIQNE 148 (1650)
Q Consensus 131 ~~~k~~vFl~tD~qI~~E 148 (1650)
.+.++++.|-|-...
T Consensus 102 ---~~~vl~IDEi~~l~~ 116 (328)
T PRK00080 102 ---EGDVLFIDEIHRLSP 116 (328)
T ss_pred ---cCCEEEEecHhhcch
Confidence 345777888775543
No 65
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=87.16 E-value=1.6 Score=59.63 Aligned_cols=89 Identities=16% Similarity=0.258 Sum_probs=60.7
Q ss_pred CCcceeehHHHHHHHHHHHHHh-cCCCCceEEEecCCchhhhHHHHHHH-h---------cCCceEEEEEcc-----cCC
Q psy4724 50 KPIDIVTFLYIIQHISRLCRIL-QQPKGHAMLITIGGSGAAEVTKLATF-M---------NEYVLFEIEILK-----TYG 113 (1650)
Q Consensus 50 ~~m~lVlF~~ai~Hv~rI~Ril-~~p~G~alLvGvgGSGrqSLtrLAaf-i---------~~~~~fqIeitk-----~Yg 113 (1650)
.+++=|+=.+.. |-|+..|| |...+|.+|+|..|+||.++++.-+. + .++.++.+.+.. .|.
T Consensus 170 ~~~~~~igr~~e--i~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l~a~~~~~ 247 (852)
T TIGR03346 170 GKLDPVIGRDEE--IRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGALIAGAKYR 247 (852)
T ss_pred CCCCcCCCcHHH--HHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHHhhcchhh
Confidence 345555555553 77788887 44678999999999999999886444 3 467888887553 232
Q ss_pred cchhHHHHHHHHHHhccCCCCCEEEEEec
Q psy4724 114 LTDWRDDLCRLMKKSGGKDAKPMTFLFSD 142 (1650)
Q Consensus 114 ~~~f~eDLk~l~~~~g~~~~k~~vFl~tD 142 (1650)
.+|-+.++.++.... ..+++++++|.+
T Consensus 248 -g~~e~~l~~~l~~~~-~~~~~~ILfIDE 274 (852)
T TIGR03346 248 -GEFEERLKAVLNEVT-KSEGQIILFIDE 274 (852)
T ss_pred -hhHHHHHHHHHHHHH-hcCCCeEEEecc
Confidence 477788888888764 234455555444
No 66
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=86.97 E-value=2.3 Score=54.06 Aligned_cols=79 Identities=19% Similarity=0.319 Sum_probs=49.1
Q ss_pred CceEEEecCCchhhhHHHHHHHhcCC----------------------------ceEEEEEcccCCcchhHHHHHHHHHH
Q psy4724 76 GHAMLITIGGSGAAEVTKLATFMNEY----------------------------VLFEIEILKTYGLTDWRDDLCRLMKK 127 (1650)
Q Consensus 76 G~alLvGvgGSGrqSLtrLAafi~~~----------------------------~~fqIeitk~Yg~~~f~eDLk~l~~~ 127 (1650)
++.||.|+.|+||.|++|.-|--..| ++.+|.-..+-|+. |++.++..
T Consensus 44 ~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~~h~Dv~eidaas~~~vd----~Ir~iie~ 119 (507)
T PRK06645 44 GGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNHNHPDIIEIDAASKTSVD----DIRRIIES 119 (507)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcCCCCcEEEeeccCCCCHH----HHHHHHHH
Confidence 57889999999999999987643332 34444444444554 44444433
Q ss_pred hcc--CCCCCEEEEEecCCcCchhhHHHHHHHHhhh
Q psy4724 128 SGG--KDAKPMTFLFSDTQIQNEVFVEHINMLLNTA 161 (1650)
Q Consensus 128 ~g~--~~~k~~vFl~tD~qI~~E~fLedIN~lL~tg 161 (1650)
+-. ..++.-|+++.|.+-... ..+|.||.+=
T Consensus 120 a~~~P~~~~~KVvIIDEa~~Ls~---~a~naLLk~L 152 (507)
T PRK06645 120 AEYKPLQGKHKIFIIDEVHMLSK---GAFNALLKTL 152 (507)
T ss_pred HHhccccCCcEEEEEEChhhcCH---HHHHHHHHHH
Confidence 310 245667888888765433 4467777663
No 67
>PLN03025 replication factor C subunit; Provisional
Probab=86.35 E-value=2.9 Score=50.38 Aligned_cols=73 Identities=11% Similarity=0.150 Sum_probs=47.1
Q ss_pred CceEEEecCCchhhhHHHHHHHhc-C--C--ceEEEEEcccCCcchhHHHHHHHHHHh-ccCCCCCEEEEEecCCcCch
Q psy4724 76 GHAMLITIGGSGAAEVTKLATFMN-E--Y--VLFEIEILKTYGLTDWRDDLCRLMKKS-GGKDAKPMTFLFSDTQIQNE 148 (1650)
Q Consensus 76 G~alLvGvgGSGrqSLtrLAafi~-~--~--~~fqIeitk~Yg~~~f~eDLk~l~~~~-g~~~~k~~vFl~tD~qI~~E 148 (1650)
.|.||.|..|+||.|+++..|.-. + + .+.++..+..+|...+++-++..-... ....++.-++++.|.+-...
T Consensus 35 ~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd~~~~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~ 113 (319)
T PLN03025 35 PNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTS 113 (319)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecccccccHHHHHHHHHHHHhccccCCCCCeEEEEEechhhcCH
Confidence 489999999999999999755432 2 2 245555555567777777665432221 10124567888888886544
No 68
>CHL00195 ycf46 Ycf46; Provisional
Probab=86.14 E-value=3.3 Score=52.47 Aligned_cols=68 Identities=16% Similarity=0.349 Sum_probs=51.4
Q ss_pred cCCCCceEEEecCCchhhhHHHHHHHhcCCceEEEEEccc----CCcchhHHHHHHHHHHhccCCCCCEEEEEecCC
Q psy4724 72 QQPKGHAMLITIGGSGAAEVTKLATFMNEYVLFEIEILKT----YGLTDWRDDLCRLMKKSGGKDAKPMTFLFSDTQ 144 (1650)
Q Consensus 72 ~~p~G~alLvGvgGSGrqSLtrLAafi~~~~~fqIeitk~----Yg~~~f~eDLk~l~~~~g~~~~k~~vFl~tD~q 144 (1650)
..|+| .||.|+.|+||..++|--|.-.+..++.+..+.- .|.++ ..++.++..|. ...|++++|.|-+
T Consensus 257 ~~pkG-ILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~vGese--~~l~~~f~~A~--~~~P~IL~IDEID 328 (489)
T CHL00195 257 PTPRG-LLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGIVGESE--SRMRQMIRIAE--ALSPCILWIDEID 328 (489)
T ss_pred CCCce-EEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccccChHH--HHHHHHHHHHH--hcCCcEEEehhhh
Confidence 45554 8999999999999999999999999999987542 34443 35777887665 4578887776544
No 69
>PF15030 DUF4527: Protein of unknown function (DUF4527)
Probab=86.08 E-value=16 Score=40.44 Aligned_cols=93 Identities=19% Similarity=0.207 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhccHHHHHHHHHHHHhhchhH
Q psy4724 773 MEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKLERAEKLIGGLGGEKTRWSEASANLSKALVNCIGD 852 (1650)
Q Consensus 773 ~~~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~~Li~~L~~E~~rW~~~~~~~~~~~~~l~Gd 852 (1650)
++.+.+..---.++++++++|+++-.++.--..=|+..+..+-.|..-=..||..|-.|..|-.-..--+.+....++.|
T Consensus 43 Qas~dEa~~L~~~L~~kl~eLqkk~~Ea~lAVtPLKak~AslV~kc~eRn~Li~~llqel~RHg~~~~lLse~a~~mv~D 122 (277)
T PF15030_consen 43 QASRDEATRLQDELQGKLEELQKKQHEANLAVTPLKAKLASLVQKCRERNRLITHLLQELHRHGPANHLLSELAQSMVND 122 (277)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 33333333334456677777777777777777777888888888888888899999999999888888888888999999
Q ss_pred HHHHHHHHHhcCC
Q psy4724 853 ILICAGIITYLGA 865 (1650)
Q Consensus 853 ~ll~aa~i~Y~G~ 865 (1650)
+.||--.-+|+.|
T Consensus 123 vALaEYaAtFL~p 135 (277)
T PF15030_consen 123 VALAEYAATFLAP 135 (277)
T ss_pred HHHHHHHHHhcCC
Confidence 9998877777765
No 70
>CHL00095 clpC Clp protease ATP binding subunit
Probab=86.01 E-value=1.8 Score=58.97 Aligned_cols=81 Identities=16% Similarity=0.323 Sum_probs=54.2
Q ss_pred eeehHHHHHHHHHHHHHh-cCCCCceEEEecCCchhhhHHHHHHH-hc---------CCceEEEEEcc-----cCCcchh
Q psy4724 54 IVTFLYIIQHISRLCRIL-QQPKGHAMLITIGGSGAAEVTKLATF-MN---------EYVLFEIEILK-----TYGLTDW 117 (1650)
Q Consensus 54 lVlF~~ai~Hv~rI~Ril-~~p~G~alLvGvgGSGrqSLtrLAaf-i~---------~~~~fqIeitk-----~Yg~~~f 117 (1650)
+|=-++-|+ |+..|| |....|.+|||..|+||.++++--|. +. ++.++.+.++. +| ..+|
T Consensus 181 ~igr~~ei~---~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l~ag~~~-~ge~ 256 (821)
T CHL00095 181 VIGREKEIE---RVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLLLAGTKY-RGEF 256 (821)
T ss_pred CCCcHHHHH---HHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHHhccCCC-ccHH
Confidence 344444444 455555 44667999999999999999865444 33 58899988652 34 4689
Q ss_pred HHHHHHHHHHhccCCCCCEEEEE
Q psy4724 118 RDDLCRLMKKSGGKDAKPMTFLF 140 (1650)
Q Consensus 118 ~eDLk~l~~~~g~~~~k~~vFl~ 140 (1650)
-+-|+.++..+- ..++++++|
T Consensus 257 e~rl~~i~~~~~--~~~~~ILfi 277 (821)
T CHL00095 257 EERLKRIFDEIQ--ENNNIILVI 277 (821)
T ss_pred HHHHHHHHHHHH--hcCCeEEEE
Confidence 999999987653 234444333
No 71
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=85.82 E-value=3.2 Score=53.11 Aligned_cols=91 Identities=20% Similarity=0.291 Sum_probs=62.3
Q ss_pred HHHHhcCC-CCce-EEEecCCchhhhHHHHHHHhcCC------------------------ceEEEEEcccCCcchhHHH
Q psy4724 67 LCRILQQP-KGHA-MLITIGGSGAAEVTKLATFMNEY------------------------VLFEIEILKTYGLTDWRDD 120 (1650)
Q Consensus 67 I~Ril~~p-~G~a-lLvGvgGSGrqSLtrLAafi~~~------------------------~~fqIeitk~Yg~~~f~eD 120 (1650)
+.+.+... -.|| |+.|..|+||.|++|.-|--..| ++++|....+.|+.++|+=
T Consensus 28 L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~eidaas~~~v~~iR~l 107 (509)
T PRK14958 28 LSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFEVDAASRTKVEDTREL 107 (509)
T ss_pred HHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEEEcccccCCHHHHHHH
Confidence 34444332 3677 89999999999999976654333 2677776667888888875
Q ss_pred HHHHHHHhccCCCCCEEEEEecCCcCchhhHHHHHHHHhhhh
Q psy4724 121 LCRLMKKSGGKDAKPMTFLFSDTQIQNEVFVEHINMLLNTAR 162 (1650)
Q Consensus 121 Lk~l~~~~g~~~~k~~vFl~tD~qI~~E~fLedIN~lL~tge 162 (1650)
+..+.+ +. ..|+.-|+++.+.+-... +-+|.||-+=|
T Consensus 108 ~~~~~~-~p-~~~~~kV~iIDE~~~ls~---~a~naLLk~LE 144 (509)
T PRK14958 108 LDNIPY-AP-TKGRFKVYLIDEVHMLSG---HSFNALLKTLE 144 (509)
T ss_pred HHHHhh-cc-ccCCcEEEEEEChHhcCH---HHHHHHHHHHh
Confidence 555444 33 356777889999887654 35688887743
No 72
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=85.49 E-value=1.9 Score=44.09 Aligned_cols=38 Identities=13% Similarity=0.095 Sum_probs=29.5
Q ss_pred CCCceEEEecCCchhhhHHHHHHHhcCCc---eEEEEEccc
Q psy4724 74 PKGHAMLITIGGSGAAEVTKLATFMNEYV---LFEIEILKT 111 (1650)
Q Consensus 74 p~G~alLvGvgGSGrqSLtrLAafi~~~~---~fqIeitk~ 111 (1650)
+++|.+|+|..||||.++++..+...... ++-+.....
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~ 41 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDI 41 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEc
Confidence 46899999999999999999666666553 777766543
No 73
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=85.41 E-value=2.4 Score=57.22 Aligned_cols=69 Identities=19% Similarity=0.356 Sum_probs=52.7
Q ss_pred hcCCCCceEEEecCCchhhhHHHHHHHhcCCceEEEEEc----ccCCcchhHHHHHHHHHHhccCCCCCEEEEEecCC
Q psy4724 71 LQQPKGHAMLITIGGSGAAEVTKLATFMNEYVLFEIEIL----KTYGLTDWRDDLCRLMKKSGGKDAKPMTFLFSDTQ 144 (1650)
Q Consensus 71 l~~p~G~alLvGvgGSGrqSLtrLAafi~~~~~fqIeit----k~Yg~~~f~eDLk~l~~~~g~~~~k~~vFl~tD~q 144 (1650)
++.|+| .||.|+.|+||.+|+|--|.-++..++.+..+ +-.|..+ ..++.++..|- ...|++++|.+-+
T Consensus 484 ~~~~~g-iLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~~vGese--~~i~~~f~~A~--~~~p~iifiDEid 556 (733)
T TIGR01243 484 IRPPKG-VLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKWVGESE--KAIREIFRKAR--QAAPAIIFFDEID 556 (733)
T ss_pred CCCCce-EEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhcccCcHH--HHHHHHHHHHH--hcCCEEEEEEChh
Confidence 345666 88999999999999999999999999888643 3345442 45778888775 5678888887754
No 74
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=85.28 E-value=3.6 Score=52.98 Aligned_cols=101 Identities=15% Similarity=0.194 Sum_probs=57.7
Q ss_pred eeehHHHHHHHHHHHHHhcC-CCCceE-EEecCCchhhhHHHHHHHhcCC------------------------ceEEEE
Q psy4724 54 IVTFLYIIQHISRLCRILQQ-PKGHAM-LITIGGSGAAEVTKLATFMNEY------------------------VLFEIE 107 (1650)
Q Consensus 54 lVlF~~ai~Hv~rI~Ril~~-p~G~al-LvGvgGSGrqSLtrLAafi~~~------------------------~~fqIe 107 (1650)
+|--+.+++++ .+.++. ..+||+ +.|+.|+||.|+++.-|-...| ++..|.
T Consensus 18 IIGQe~iv~~L---~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i~~~~h~DiieId 94 (605)
T PRK05896 18 IIGQELIKKIL---VNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESINTNQSVDIVELD 94 (605)
T ss_pred hcCcHHHHHHH---HHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHHcCCCCceEEec
Confidence 33334444443 344434 345755 7899999999999876443221 344444
Q ss_pred EcccCCcchhHHHHHHHHHHhccCCCCCEEEEEecCCcCchhhHHHHHHHHhhhh
Q psy4724 108 ILKTYGLTDWRDDLCRLMKKSGGKDAKPMTFLFSDTQIQNEVFVEHINMLLNTAR 162 (1650)
Q Consensus 108 itk~Yg~~~f~eDLk~l~~~~g~~~~k~~vFl~tD~qI~~E~fLedIN~lL~tge 162 (1650)
-..+.|+.+.|+=+ ..+.... ..++.-|+++.+.+-... +..|.||.+=|
T Consensus 95 aas~igVd~IReIi-~~~~~~P-~~~~~KVIIIDEad~Lt~---~A~NaLLKtLE 144 (605)
T PRK05896 95 AASNNGVDEIRNII-DNINYLP-TTFKYKVYIIDEAHMLST---SAWNALLKTLE 144 (605)
T ss_pred cccccCHHHHHHHH-HHHHhch-hhCCcEEEEEechHhCCH---HHHHHHHHHHH
Confidence 33346666666533 3333344 334556788888776543 35677887643
No 75
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=85.20 E-value=1.2 Score=52.01 Aligned_cols=52 Identities=17% Similarity=0.295 Sum_probs=40.6
Q ss_pred HHHHHHHHHhcCCCCceEEEecCCchhhhHHH-HHHHhcC--CceEEEEEcccCC
Q psy4724 62 QHISRLCRILQQPKGHAMLITIGGSGAAEVTK-LATFMNE--YVLFEIEILKTYG 113 (1650)
Q Consensus 62 ~Hv~rI~Ril~~p~G~alLvGvgGSGrqSLtr-LAafi~~--~~~fqIeitk~Yg 113 (1650)
+|+..+-+.+..++|..+++|..||||.|+.+ |..++.. ..++.||-..-|.
T Consensus 67 ~~~~~l~~~~~~~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~ 121 (264)
T cd01129 67 ENLEIFRKLLEKPHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQ 121 (264)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceec
Confidence 45566778888999999999999999999988 6678864 4577776554444
No 76
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=85.07 E-value=3.3 Score=46.30 Aligned_cols=52 Identities=10% Similarity=0.072 Sum_probs=33.1
Q ss_pred CCCCceEEEecCCchhhhHHHHHHHhcCCceEEEEEcccCCcchhHHHHHHHHHHh
Q psy4724 73 QPKGHAMLITIGGSGAAEVTKLATFMNEYVLFEIEILKTYGLTDWRDDLCRLMKKS 128 (1650)
Q Consensus 73 ~p~G~alLvGvgGSGrqSLtrLAafi~~~~~fqIeitk~Yg~~~f~eDLk~l~~~~ 128 (1650)
.+-.|+||.|+.|.||.||+++-|.-.++.+.... ...-.. ..||..++...
T Consensus 48 ~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~s-g~~i~k---~~dl~~il~~l 99 (233)
T PF05496_consen 48 EALDHMLFYGPPGLGKTTLARIIANELGVNFKITS-GPAIEK---AGDLAAILTNL 99 (233)
T ss_dssp S---EEEEESSTTSSHHHHHHHHHHHCT--EEEEE-CCC--S---CHHHHHHHHT-
T ss_pred CCcceEEEECCCccchhHHHHHHHhccCCCeEecc-chhhhh---HHHHHHHHHhc
Confidence 35679999999999999999999988888764332 111111 36787877654
No 77
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=84.87 E-value=3.8 Score=53.68 Aligned_cols=104 Identities=13% Similarity=0.148 Sum_probs=62.7
Q ss_pred ceeehHHHHHHHHHHHHHhcCCCCceEEEecCCchhhhHHHHHHHhcCC--------------------------ceEEE
Q psy4724 53 DIVTFLYIIQHISRLCRILQQPKGHAMLITIGGSGAAEVTKLATFMNEY--------------------------VLFEI 106 (1650)
Q Consensus 53 ~lVlF~~ai~Hv~rI~Ril~~p~G~alLvGvgGSGrqSLtrLAafi~~~--------------------------~~fqI 106 (1650)
++|--++++.++.+..+-=+. .-+.||.|..|+||.+++|.-|-...| +++.+
T Consensus 17 ~liGq~~i~~~L~~~l~~~rl-~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C~~i~~g~h~D~~ei 95 (620)
T PRK14948 17 ELVGQEAIATTLKNALISNRI-APAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELCRAIAAGNALDVIEI 95 (620)
T ss_pred hccChHHHHHHHHHHHHcCCC-CceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHHHHHhcCCCccEEEE
Confidence 456666666655554443121 124568899999999999876544333 34555
Q ss_pred EEcccCCcchhHHHHHHHHHHhccCCCCCEEEEEecCCcCchhhHHHHHHHHhhhh
Q psy4724 107 EILKTYGLTDWRDDLCRLMKKSGGKDAKPMTFLFSDTQIQNEVFVEHINMLLNTAR 162 (1650)
Q Consensus 107 eitk~Yg~~~f~eDLk~l~~~~g~~~~k~~vFl~tD~qI~~E~fLedIN~lL~tge 162 (1650)
.-..+.++.+.|+=+..+.. .. ..+..-|++|.+.+-..+ +-.|.||.+=|
T Consensus 96 ~~~~~~~vd~IReii~~a~~-~p-~~~~~KViIIDEad~Lt~---~a~naLLK~LE 146 (620)
T PRK14948 96 DAASNTGVDNIRELIERAQF-AP-VQARWKVYVIDECHMLST---AAFNALLKTLE 146 (620)
T ss_pred eccccCCHHHHHHHHHHHhh-Ch-hcCCceEEEEECccccCH---HHHHHHHHHHh
Confidence 54445666666654433332 22 345667889999876544 45677887744
No 78
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=84.84 E-value=2.7 Score=55.63 Aligned_cols=65 Identities=17% Similarity=0.310 Sum_probs=46.2
Q ss_pred CCCceEEEecCCchhhhHHHHHHHhcCCceEEEEEcc----cCCcchhHHHHHHHHHHhccCCCCCEEEEEecC
Q psy4724 74 PKGHAMLITIGGSGAAEVTKLATFMNEYVLFEIEILK----TYGLTDWRDDLCRLMKKSGGKDAKPMTFLFSDT 143 (1650)
Q Consensus 74 p~G~alLvGvgGSGrqSLtrLAafi~~~~~fqIeitk----~Yg~~~f~eDLk~l~~~~g~~~~k~~vFl~tD~ 143 (1650)
|+| +||+|..|+||.++++..+--++..++.+..+. ..|.. ...++.++..+. ...|++++|.|-
T Consensus 185 ~~g-ill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~~g~~--~~~~~~~f~~a~--~~~P~IifIDEi 253 (644)
T PRK10733 185 PKG-VLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVG--ASRVRDMFEQAK--KAAPCIIFIDEI 253 (644)
T ss_pred CCc-EEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhhhccc--HHHHHHHHHHHH--hcCCcEEEehhH
Confidence 555 999999999999999999888888888775431 11221 234556676664 457888777774
No 79
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=84.30 E-value=26 Score=40.20 Aligned_cols=25 Identities=24% Similarity=0.255 Sum_probs=12.2
Q ss_pred hhhccHHHHHHHHHHHHhhchhHHH
Q psy4724 830 GEKTRWSEASANLSKALVNCIGDIL 854 (1650)
Q Consensus 830 ~E~~rW~~~~~~~~~~~~~l~Gd~l 854 (1650)
.|..|=...+..++.+..+.-|.+|
T Consensus 242 ~~~~~l~k~~~~~~sKV~kf~~~sl 266 (269)
T PF05278_consen 242 MESTRLSKTIKSIKSKVEKFHGKSL 266 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 3444444455555555555544443
No 80
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=84.07 E-value=2.6 Score=52.24 Aligned_cols=68 Identities=12% Similarity=0.202 Sum_probs=47.6
Q ss_pred CCCceEEEecCCchhhhHHHHHHHhcCCceEEEEEcc---cC-CcchhHHHHHHHHHHhccCCCCCEEEEEecCCc
Q psy4724 74 PKGHAMLITIGGSGAAEVTKLATFMNEYVLFEIEILK---TY-GLTDWRDDLCRLMKKSGGKDAKPMTFLFSDTQI 145 (1650)
Q Consensus 74 p~G~alLvGvgGSGrqSLtrLAafi~~~~~fqIeitk---~Y-g~~~f~eDLk~l~~~~g~~~~k~~vFl~tD~qI 145 (1650)
|..++||.|+.|+||.+|+|..|.-.+..++.+..+. .| |.. -.-++.++..+. .+.|++++|.|-+-
T Consensus 164 ~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~~~~g~~--~~~i~~~f~~a~--~~~p~IlfiDEiD~ 235 (389)
T PRK03992 164 PPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQKFIGEG--ARLVRELFELAR--EKAPSIIFIDEIDA 235 (389)
T ss_pred CCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhHhhccch--HHHHHHHHHHHH--hcCCeEEEEechhh
Confidence 4456999999999999999999988888877775431 22 222 123455676665 46788888877654
No 81
>PRK13948 shikimate kinase; Provisional
Probab=83.97 E-value=2.3 Score=46.55 Aligned_cols=73 Identities=10% Similarity=0.112 Sum_probs=51.2
Q ss_pred CCCceEEEecCCchhhhHHHHHHHhcCCceEEEEE-------------cccCCcchhHHHHHHHHHHhccCCCCCEEEEE
Q psy4724 74 PKGHAMLITIGGSGAAEVTKLATFMNEYVLFEIEI-------------LKTYGLTDWRDDLCRLMKKSGGKDAKPMTFLF 140 (1650)
Q Consensus 74 p~G~alLvGvgGSGrqSLtrLAafi~~~~~fqIei-------------tk~Yg~~~f~eDLk~l~~~~g~~~~k~~vFl~ 140 (1650)
|..+.+|||..||||.|+.|..|--.|+.++.... -..||...||+=-..++.... ...++|+-.
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D~~ie~~~g~si~~if~~~Ge~~fR~~E~~~l~~l~--~~~~~VIa~ 86 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRALMLHFIDTDRYIERVTGKSIPEIFRHLGEAYFRRCEAEVVRRLT--RLDYAVISL 86 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECCHHHHHHHhCCHHHHHHHhCHHHHHHHHHHHHHHHH--hcCCeEEEC
Confidence 45899999999999999999998777877665541 134677778775556666654 234566666
Q ss_pred ecCCcCch
Q psy4724 141 SDTQIQNE 148 (1650)
Q Consensus 141 tD~qI~~E 148 (1650)
+..-+.++
T Consensus 87 GgG~v~~~ 94 (182)
T PRK13948 87 GGGTFMHE 94 (182)
T ss_pred CCcEEcCH
Confidence 66655544
No 82
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=83.47 E-value=4.4 Score=49.16 Aligned_cols=37 Identities=19% Similarity=0.326 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHhcCCC-CceEEEecCCchhhhHHHHHHH
Q psy4724 58 LYIIQHISRLCRILQQPK-GHAMLITIGGSGAAEVTKLATF 97 (1650)
Q Consensus 58 ~~ai~Hv~rI~Ril~~p~-G~alLvGvgGSGrqSLtrLAaf 97 (1650)
+++++++.+ .++.++ +|.||.|..|+||.++++..+-
T Consensus 21 ~~~~~~L~~---~~~~~~~~~lll~Gp~GtGKT~la~~~~~ 58 (337)
T PRK12402 21 DEVVERLSR---AVDSPNLPHLLVQGPPGSGKTAAVRALAR 58 (337)
T ss_pred HHHHHHHHH---HHhCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 445554444 334443 4899999999999999976443
No 83
>KOG2572|consensus
Probab=83.36 E-value=0.66 Score=54.25 Aligned_cols=8 Identities=38% Similarity=0.343 Sum_probs=3.2
Q ss_pred HHHHHHhH
Q psy4724 1538 LEEINTSI 1545 (1650)
Q Consensus 1538 le~~~~~l 1545 (1650)
||.....|
T Consensus 389 lE~rlr~l 396 (498)
T KOG2572|consen 389 LEKRLRSL 396 (498)
T ss_pred HHHHHhhh
Confidence 34444433
No 84
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=83.11 E-value=36 Score=38.95 Aligned_cols=66 Identities=18% Similarity=0.420 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhccHHHHHH-HHHHHHhhchhHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy4724 801 SKDKKELEDQIELCKQKLERAEKLIGGLGGEKTRWSEASA-NLSKALVNCIGDILICAGIITYLGAFTVDFRNDLIEQWK 879 (1650)
Q Consensus 801 ~~e~~~l~~~~~~~~~rl~ra~~Li~~L~~E~~rW~~~~~-~~~~~~~~l~Gd~ll~aa~i~Y~G~f~~~~R~~l~~~w~ 879 (1650)
..+++.+..+++.++.+.+.|++.+ ..|-+||+.+-. ++ -++|+.|+=. ...+-++++..|.
T Consensus 176 ~~dr~~~~~ev~~~e~kve~a~~~~---k~e~~Rf~~~k~~D~-------------k~~~~~yae~-~i~~~~~~~~~We 238 (243)
T cd07666 176 KADRDLLKEEIEKLEDKVECANNAL---KADWERWKQNMQTDL-------------RSAFTDMAEN-NISYYEECLATWE 238 (243)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH-------------HHHHHHHHHH-HHHHHHHHHHHHH
Confidence 3445666667777777777776654 489999986443 22 2344555432 2344556778887
Q ss_pred Hhhh
Q psy4724 880 SLSS 883 (1650)
Q Consensus 880 ~~~~ 883 (1650)
..+.
T Consensus 239 ~fl~ 242 (243)
T cd07666 239 SFLH 242 (243)
T ss_pred HHhc
Confidence 7653
No 85
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=83.07 E-value=2.4e+02 Score=40.47 Aligned_cols=33 Identities=15% Similarity=0.264 Sum_probs=28.6
Q ss_pred HhcCCCCceEEEecCCchhhhHHHHHHHhcCCc
Q psy4724 70 ILQQPKGHAMLITIGGSGAAEVTKLATFMNEYV 102 (1650)
Q Consensus 70 il~~p~G~alLvGvgGSGrqSLtrLAafi~~~~ 102 (1650)
++..+.|.-..||+.||||....---+|+.|-.
T Consensus 19 ~i~f~~~~t~IvGPNGSGKSNI~DAi~fVLG~~ 51 (1163)
T COG1196 19 EINFSPGFTAIVGPNGSGKSNIVDAIRFVLGEQ 51 (1163)
T ss_pred eeecCCCCeEEECCCCCchHHHHHHHHHHhCcc
Confidence 356788999999999999999999999998744
No 86
>PRK11637 AmiB activator; Provisional
Probab=82.87 E-value=9.7 Score=47.91 Aligned_cols=72 Identities=17% Similarity=0.339 Sum_probs=45.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy4724 757 PKKAKLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKLERAEKLIGGL 828 (1650)
Q Consensus 757 P~~~~l~~~e~~l~~~~~~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~~Li~~L 828 (1650)
..++++++.+++++..+.++...+.++.+++.++..+..++.....+...++.+++.++.++...+.=|..+
T Consensus 44 ~~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~ 115 (428)
T PRK11637 44 DNRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKL 115 (428)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666666666666666666666666666666666666666666666666666666665555544444
No 87
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=82.82 E-value=20 Score=37.13 Aligned_cols=89 Identities=17% Similarity=0.197 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhccHHHHHH
Q psy4724 761 KLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKLERAEKLIGGLGGEKTRWSEASA 840 (1650)
Q Consensus 761 ~l~~~e~~l~~~~~~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~~Li~~L~~E~~rW~~~~~ 840 (1650)
+|.+++..-+.........+.+|..+++....+..+.+.+.++...|+.++..+...+.+...=+..|..|+.-+...+.
T Consensus 11 kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq 90 (140)
T PF10473_consen 11 KLKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQ 90 (140)
T ss_pred HHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444555555555555555555555566666666666666666666666666666666666666555
Q ss_pred HHHHHHhhc
Q psy4724 841 NLSKALVNC 849 (1650)
Q Consensus 841 ~~~~~~~~l 849 (1650)
..+.+...|
T Consensus 91 ~~q~kv~eL 99 (140)
T PF10473_consen 91 KKQEKVSEL 99 (140)
T ss_pred HHHHHHHHH
Confidence 555555444
No 88
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=82.76 E-value=4.9 Score=52.18 Aligned_cols=83 Identities=19% Similarity=0.265 Sum_probs=54.5
Q ss_pred CCce-EEEecCCchhhhHHHHHHHh--c----------------------CCceEEEEEcccCCcchhHHHHHHHHHHhc
Q psy4724 75 KGHA-MLITIGGSGAAEVTKLATFM--N----------------------EYVLFEIEILKTYGLTDWRDDLCRLMKKSG 129 (1650)
Q Consensus 75 ~G~a-lLvGvgGSGrqSLtrLAafi--~----------------------~~~~fqIeitk~Yg~~~f~eDLk~l~~~~g 129 (1650)
-+|| |+.|..|+||.|++|.-|-- | ..++++|.-+.+-|..+.|+=+.++. .+-
T Consensus 37 ~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i~~g~~~dv~eidaas~~~vd~ir~i~~~v~-~~p 115 (559)
T PRK05563 37 ISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAITNGSLMDVIEIDAASNNGVDEIRDIRDKVK-YAP 115 (559)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCCCCCeEEeeccccCCHHHHHHHHHHHh-hCc
Confidence 4787 55999999999999876432 2 13567776665667666664332322 233
Q ss_pred cCCCCCEEEEEecCCcCchhhHHHHHHHHhhhh
Q psy4724 130 GKDAKPMTFLFSDTQIQNEVFVEHINMLLNTAR 162 (1650)
Q Consensus 130 ~~~~k~~vFl~tD~qI~~E~fLedIN~lL~tge 162 (1650)
..++.-|+++.+.+-..+ +.+|.||.|=|
T Consensus 116 -~~~~~kViIIDE~~~Lt~---~a~naLLKtLE 144 (559)
T PRK05563 116 -SEAKYKVYIIDEVHMLST---GAFNALLKTLE 144 (559)
T ss_pred -ccCCeEEEEEECcccCCH---HHHHHHHHHhc
Confidence 356677888888775433 46788888744
No 89
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=82.75 E-value=5.6 Score=50.28 Aligned_cols=81 Identities=15% Similarity=0.219 Sum_probs=57.0
Q ss_pred ceEEEecCCchhhhHHHHHHH-h-c----------------------CCceEEEEEcccCCcchhHHHHHHHHHHhccCC
Q psy4724 77 HAMLITIGGSGAAEVTKLATF-M-N----------------------EYVLFEIEILKTYGLTDWRDDLCRLMKKSGGKD 132 (1650)
Q Consensus 77 ~alLvGvgGSGrqSLtrLAaf-i-~----------------------~~~~fqIeitk~Yg~~~f~eDLk~l~~~~g~~~ 132 (1650)
+.||.|+.|+||.|++|+-|- + | ..++++|.-+.+.|+.+.|+=+..+ .... ..
T Consensus 37 a~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~eidaas~~~vddIR~Iie~~-~~~P-~~ 114 (491)
T PRK14964 37 SILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEIDAASNTSVDDIKVILENS-CYLP-IS 114 (491)
T ss_pred eEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEEecccCCCHHHHHHHHHHH-Hhcc-cc
Confidence 588999999999999998874 2 1 2467777777677887777644333 2233 34
Q ss_pred CCCEEEEEecCCcCchhhHHHHHHHHhhhh
Q psy4724 133 AKPMTFLFSDTQIQNEVFVEHINMLLNTAR 162 (1650)
Q Consensus 133 ~k~~vFl~tD~qI~~E~fLedIN~lL~tge 162 (1650)
++.-|+++.+.+-... +.+|.||.+-|
T Consensus 115 ~~~KVvIIDEah~Ls~---~A~NaLLK~LE 141 (491)
T PRK14964 115 SKFKVYIIDEVHMLSN---SAFNALLKTLE 141 (491)
T ss_pred CCceEEEEeChHhCCH---HHHHHHHHHHh
Confidence 6677889988765443 46788888865
No 90
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=82.64 E-value=2.3 Score=47.33 Aligned_cols=51 Identities=18% Similarity=0.208 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHh--cCCCCceEEEecCCchhhhHHH--HHHHhcCCceEEEEEc
Q psy4724 58 LYIIQHISRLCRIL--QQPKGHAMLITIGGSGAAEVTK--LATFMNEYVLFEIEIL 109 (1650)
Q Consensus 58 ~~ai~Hv~rI~Ril--~~p~G~alLvGvgGSGrqSLtr--LAafi~~~~~fqIeit 109 (1650)
+.-=+-++|=.|-+ ..|--|+||.|.-|+||.||.| ++.|-. -.+.=||++
T Consensus 66 d~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~-~glrLVEV~ 120 (287)
T COG2607 66 DRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYAD-EGLRLVEVD 120 (287)
T ss_pred hHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHh-cCCeEEEEc
Confidence 33333344444433 5788999999999999999987 344443 234456666
No 91
>PHA02244 ATPase-like protein
Probab=82.48 E-value=4.3 Score=49.00 Aligned_cols=87 Identities=9% Similarity=0.157 Sum_probs=60.4
Q ss_pred HHHHHHHcCCeEEEecccccccccchHHHhHHHHhhcCeEEEEecCeeeeecCCeeEEEEeCCCC----------CCCCc
Q psy4724 967 TLERAIRTGTAVLLENIQETIDSSLEPVLLKSYYKIQNQLIMTLNNKEIEYNIKFRLYITTRLKN----------PHYIP 1036 (1650)
Q Consensus 967 ~le~ai~~G~~vlie~v~e~~dp~l~p~L~~~~~~~~~~~~i~ig~~~i~~~~~FrL~l~Tk~~n----------p~~~p 1036 (1650)
.+-.|++.|..|+|.++ +.+.|.....|..-+-. ..+.+.+..+..||+||++.++..+. ...++
T Consensus 173 pLl~A~~~GgvLiLDEI-d~a~p~vq~~L~~lLd~----r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~ 247 (383)
T PHA02244 173 PFYEAFKKGGLFFIDEI-DASIPEALIIINSAIAN----KFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDG 247 (383)
T ss_pred HHHHHhhcCCEEEEeCc-CcCCHHHHHHHHHHhcc----CeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCH
Confidence 45667899999999999 56666665555443311 15666677889999999999997633 33467
Q ss_pred ccccceEEEEeeeChhhHHHHHH
Q psy4724 1037 EILTKITLINFMITPQGLQNQLL 1059 (1650)
Q Consensus 1037 e~~~~~tvinf~vt~~gLe~qlL 1059 (1650)
.+..|..+|+|.--. .+|.++.
T Consensus 248 AllDRFv~I~~dyp~-~~E~~i~ 269 (383)
T PHA02244 248 ATLDRFAPIEFDYDE-KIEHLIS 269 (383)
T ss_pred HHHhhcEEeeCCCCc-HHHHHHh
Confidence 777888888886643 4554443
No 92
>KOG0731|consensus
Probab=82.22 E-value=5 Score=52.46 Aligned_cols=97 Identities=12% Similarity=0.278 Sum_probs=66.0
Q ss_pred CCccccCCHHHHHHHHHHHHHHHhccCCCCCcceeehHHHHHHHHHHHHHhcCCCCceEEEecCCchhhhHHHHHHHhcC
Q psy4724 21 LVYDEIDNLDLLTEKINQYIVDYNTQNSNKPIDIVTFLYIIQHISRLCRILQQPKGHAMLITIGGSGAAEVTKLATFMNE 100 (1650)
Q Consensus 21 ~~Y~~~~~~~~l~~~l~~~l~~yN~~~~~~~m~lVlF~~ai~Hv~rI~Ril~~p~G~alLvGvgGSGrqSLtrLAafi~~ 100 (1650)
-.|.+|...+..+.-|+|+.+=.-+ +. . |. -.-.+-||| |||+|+.|+||..|+|--|=-+|
T Consensus 308 V~FkDVAG~deAK~El~E~V~fLKN--P~---~---Y~---------~lGAKiPkG-vLL~GPPGTGKTLLAKAiAGEAg 369 (774)
T KOG0731|consen 308 VKFKDVAGVDEAKEELMEFVKFLKN--PE---Q---YQ---------ELGAKIPKG-VLLVGPPGTGKTLLAKAIAGEAG 369 (774)
T ss_pred CccccccCcHHHHHHHHHHHHHhcC--HH---H---HH---------HcCCcCcCc-eEEECCCCCcHHHHHHHHhcccC
Confidence 3578888888888888776543211 10 0 00 012356888 78999999999999999999999
Q ss_pred CceEEEEEcccCCcchhHHHHH--------HHHHHhccCCCCCEEEEEecC
Q psy4724 101 YVLFEIEILKTYGLTDWRDDLC--------RLMKKSGGKDAKPMTFLFSDT 143 (1650)
Q Consensus 101 ~~~fqIeitk~Yg~~~f~eDLk--------~l~~~~g~~~~k~~vFl~tD~ 143 (1650)
--+|.+ +-+||-|=+. .++..| .++.|+.+.+.+-
T Consensus 370 VPF~sv------SGSEFvE~~~g~~asrvr~lf~~a--r~~aP~iifidei 412 (774)
T KOG0731|consen 370 VPFFSV------SGSEFVEMFVGVGASRVRDLFPLA--RKNAPSIIFIDEI 412 (774)
T ss_pred Cceeee------chHHHHHHhcccchHHHHHHHHHh--hccCCeEEEeccc
Confidence 999988 4556666443 445544 4788887766553
No 93
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=81.97 E-value=7.1 Score=46.88 Aligned_cols=83 Identities=8% Similarity=0.077 Sum_probs=46.7
Q ss_pred CceEEEecCCchhhhHHHHHHHh-c--CCceEEEEE--cccCCcchhHHHHHHHHHHhccCCCCCEEEEEecCCcCchhh
Q psy4724 76 GHAMLITIGGSGAAEVTKLATFM-N--EYVLFEIEI--LKTYGLTDWRDDLCRLMKKSGGKDAKPMTFLFSDTQIQNEVF 150 (1650)
Q Consensus 76 G~alLvGvgGSGrqSLtrLAafi-~--~~~~fqIei--tk~Yg~~~f~eDLk~l~~~~g~~~~k~~vFl~tD~qI~~E~f 150 (1650)
.|.+|.|..|+||.++++.-+-- . ++...-+++ +...+...+++.++......-...+.+-++++.|.+-.....
T Consensus 39 ~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~~~ 118 (319)
T PRK00440 39 PHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASDERGIDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTSDA 118 (319)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEeccccccchHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCHHH
Confidence 47999999999999998866543 2 222222333 333455556677765544322111345677777776554433
Q ss_pred HHHHHHHH
Q psy4724 151 VEHINMLL 158 (1650)
Q Consensus 151 LedIN~lL 158 (1650)
...+..++
T Consensus 119 ~~~L~~~l 126 (319)
T PRK00440 119 QQALRRTM 126 (319)
T ss_pred HHHHHHHH
Confidence 33333333
No 94
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=81.72 E-value=2.1 Score=48.84 Aligned_cols=81 Identities=26% Similarity=0.313 Sum_probs=54.8
Q ss_pred cCCCC-ceEEEecCCchhhhHHHHHHHhcCCceEEEEEcccCCcchh-HHHHHHHHHHhccCCCCCEEEEEecCCcCchh
Q psy4724 72 QQPKG-HAMLITIGGSGAAEVTKLATFMNEYVLFEIEILKTYGLTDW-RDDLCRLMKKSGGKDAKPMTFLFSDTQIQNEV 149 (1650)
Q Consensus 72 ~~p~G-~alLvGvgGSGrqSLtrLAafi~~~~~fqIeitk~Yg~~~f-~eDLk~l~~~~g~~~~k~~vFl~tD~qI~~E~ 149 (1650)
.-+.| ..+++|..||||.||.++.+=+..-..=.|-+. |.+-. ..+++.+-.+.| .||-..|.|+..+.
T Consensus 26 ~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~---g~~~~~~~~~~~~~~~vG------~VfQnpd~q~~~~t 96 (235)
T COG1122 26 EIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVD---GLDTSSEKSLLELRQKVG------LVFQNPDDQLFGPT 96 (235)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEEC---CeeccchhhHHHhhcceE------EEEECcccccccCc
Confidence 34555 899999999999999998776654333333222 22211 355655555555 79999999999999
Q ss_pred hHHHHHH-HHhhh
Q psy4724 150 FVEHINM-LLNTA 161 (1650)
Q Consensus 150 fLedIN~-lL~tg 161 (1650)
..+||-. +.|.|
T Consensus 97 V~~evafg~~n~g 109 (235)
T COG1122 97 VEDEVAFGLENLG 109 (235)
T ss_pred HHHHHhhchhhcC
Confidence 9999844 44444
No 95
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=81.72 E-value=31 Score=39.11 Aligned_cols=36 Identities=11% Similarity=0.172 Sum_probs=14.0
Q ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4724 751 VIKIVGPKKAKLAEAEADYAVQMEKLNSKRAQLATV 786 (1650)
Q Consensus 751 v~~~v~P~~~~l~~~e~~l~~~~~~L~~~~~~l~~~ 786 (1650)
..+.+.-++.+++..+.+....+.+++..++++...
T Consensus 43 ~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~ 78 (239)
T COG1579 43 LNKALEALEIELEDLENQVSQLESEIQEIRERIKRA 78 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344444443333333333333333333
No 96
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=81.64 E-value=7 Score=49.95 Aligned_cols=102 Identities=18% Similarity=0.263 Sum_probs=59.4
Q ss_pred eeehHHHHHHHHHHHHHhcCCCCce-EEEecCCchhhhHHH-HHHHhc-----------------------CCceEEEEE
Q psy4724 54 IVTFLYIIQHISRLCRILQQPKGHA-MLITIGGSGAAEVTK-LATFMN-----------------------EYVLFEIEI 108 (1650)
Q Consensus 54 lVlF~~ai~Hv~rI~Ril~~p~G~a-lLvGvgGSGrqSLtr-LAafi~-----------------------~~~~fqIei 108 (1650)
+|--+.+++.+.+..+ +..-+|+ |+.|..|+||.|++| ||..+. .++++++.-
T Consensus 16 iiGqe~v~~~L~~~I~--~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~elda 93 (535)
T PRK08451 16 LIGQESVSKTLSLALD--NNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDIIEMDA 93 (535)
T ss_pred ccCcHHHHHHHHHHHH--cCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEEEecc
Confidence 4444444444333322 2234677 789999999999998 454542 134666654
Q ss_pred cccCCcchhHHHHHHHHHHhccCCCCCEEEEEecCCcCchhhHHHHHHHHhhhh
Q psy4724 109 LKTYGLTDWRDDLCRLMKKSGGKDAKPMTFLFSDTQIQNEVFVEHINMLLNTAR 162 (1650)
Q Consensus 109 tk~Yg~~~f~eDLk~l~~~~g~~~~k~~vFl~tD~qI~~E~fLedIN~lL~tge 162 (1650)
+.+.|+.+.|+-++.+.. .. ..+..-||++.+.|-... +-.|.||.+=|
T Consensus 94 as~~gId~IRelie~~~~-~P-~~~~~KVvIIDEad~Lt~---~A~NALLK~LE 142 (535)
T PRK08451 94 ASNRGIDDIRELIEQTKY-KP-SMARFKIFIIDEVHMLTK---EAFNALLKTLE 142 (535)
T ss_pred ccccCHHHHHHHHHHHhh-Cc-ccCCeEEEEEECcccCCH---HHHHHHHHHHh
Confidence 444566666655543322 22 234567889999876543 34577777744
No 97
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=81.62 E-value=2.9 Score=51.76 Aligned_cols=67 Identities=12% Similarity=0.227 Sum_probs=45.4
Q ss_pred CCCceEEEecCCchhhhHHHHHHHhcCCceEEEEEc---ccC-CcchhHHHHHHHHHHhccCCCCCEEEEEecCC
Q psy4724 74 PKGHAMLITIGGSGAAEVTKLATFMNEYVLFEIEIL---KTY-GLTDWRDDLCRLMKKSGGKDAKPMTFLFSDTQ 144 (1650)
Q Consensus 74 p~G~alLvGvgGSGrqSLtrLAafi~~~~~fqIeit---k~Y-g~~~f~eDLk~l~~~~g~~~~k~~vFl~tD~q 144 (1650)
|..++||.|+.|+||.+|+|..|.-.+..++.+..+ ..| |.. ...++.++..|. ...|++++|.|-+
T Consensus 178 ~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~k~~ge~--~~~lr~lf~~A~--~~~P~ILfIDEID 248 (398)
T PTZ00454 178 PPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQKYLGEG--PRMVRDVFRLAR--ENAPSIIFIDEVD 248 (398)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHHHhcchh--HHHHHHHHHHHH--hcCCeEEEEECHh
Confidence 344689999999999999999999888888777532 112 221 233555666554 4677777666643
No 98
>KOG0804|consensus
Probab=81.38 E-value=22 Score=43.04 Aligned_cols=79 Identities=11% Similarity=0.171 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhccHHHHHHHHHHHHhhch
Q psy4724 772 QMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKLERAEKLIGGLGGEKTRWSEASANLSKALVNCI 850 (1650)
Q Consensus 772 ~~~~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~~Li~~L~~E~~rW~~~~~~~~~~~~~l~ 850 (1650)
.++.+..+-.+..+++.....+++.-....+..++++..++.++.++.--..+-..|-..+.-|...+..++++.+...
T Consensus 352 ~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~~~~~ 430 (493)
T KOG0804|consen 352 QKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEEREKEAL 430 (493)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333334444444444444444444444444444444444445555556666788888888887776544
No 99
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=81.35 E-value=4.3 Score=45.99 Aligned_cols=37 Identities=24% Similarity=0.320 Sum_probs=27.7
Q ss_pred HHHHHHHHhcC-CCCceEEEecCCchhhhHHHHHHHhc
Q psy4724 63 HISRLCRILQQ-PKGHAMLITIGGSGAAEVTKLATFMN 99 (1650)
Q Consensus 63 Hv~rI~Ril~~-p~G~alLvGvgGSGrqSLtrLAafi~ 99 (1650)
.+.+|.+++.. +.++.+|.|+.|+||.||.+=.....
T Consensus 7 el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~ 44 (234)
T PF01637_consen 7 ELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINEL 44 (234)
T ss_dssp HHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHh
Confidence 45667777766 57899999999999999987444433
No 100
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=81.30 E-value=2.4 Score=52.06 Aligned_cols=35 Identities=20% Similarity=0.370 Sum_probs=29.0
Q ss_pred cCCCCceEEEecCCchhhhHHHHHHHhcCCceEEEE
Q psy4724 72 QQPKGHAMLITIGGSGAAEVTKLATFMNEYVLFEIE 107 (1650)
Q Consensus 72 ~~p~G~alLvGvgGSGrqSLtrLAafi~~~~~fqIe 107 (1650)
..|+| +||+|+.|+||.+|+|..+.-.+..++.+.
T Consensus 154 ~~p~g-vLL~GppGtGKT~lakaia~~l~~~~~~v~ 188 (364)
T TIGR01242 154 EPPKG-VLLYGPPGTGKTLLAKAVAHETNATFIRVV 188 (364)
T ss_pred CCCce-EEEECCCCCCHHHHHHHHHHhCCCCEEecc
Confidence 34554 999999999999999999988887777664
No 101
>KOG2572|consensus
Probab=81.29 E-value=0.77 Score=53.71 Aligned_cols=15 Identities=20% Similarity=0.408 Sum_probs=7.4
Q ss_pred HHHHHHHhhcCCCcc
Q psy4724 1339 GIQIYVSKNLGEQYI 1353 (1650)
Q Consensus 1339 ~~~~fi~~~lG~~~~ 1353 (1650)
-++..|.+..|.+++
T Consensus 283 nLTaLvGElVGaRlI 297 (498)
T KOG2572|consen 283 NLTALVGELVGARLI 297 (498)
T ss_pred hHHHHHHHHHHHHHH
Confidence 344555555555544
No 102
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=81.19 E-value=3.3 Score=51.84 Aligned_cols=70 Identities=24% Similarity=0.484 Sum_probs=49.3
Q ss_pred HHHHHHHHHH-HHHhcCCCCceEEE-ecCCchhhhH--HHHHHHhcCCceEEEEEcccCCcchhHHHHHHHHHHhccCCC
Q psy4724 58 LYIIQHISRL-CRILQQPKGHAMLI-TIGGSGAAEV--TKLATFMNEYVLFEIEILKTYGLTDWRDDLCRLMKKSGGKDA 133 (1650)
Q Consensus 58 ~~ai~Hv~rI-~Ril~~p~G~alLv-GvgGSGrqSL--trLAafi~~~~~fqIeitk~Yg~~~f~eDLk~l~~~~g~~~~ 133 (1650)
.|.++-|-+= .-|||++.+.+|.| |..||||.|. -|+|=.+-+| -|..++
T Consensus 207 rdIV~TIQkEQneIIR~ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~--------------------------R~~l~~ 260 (747)
T COG3973 207 RDIVETIQKEQNEIIRFEKNKILVVQGAAGSGKTTIALHRVAYLLYGY--------------------------RGPLQA 260 (747)
T ss_pred HHHHHHhhHhHHHHHhccCCCeEEEecCCCCCchhHHHHHHHHHHhcc--------------------------cccccc
Confidence 4555555553 56899999888877 9999999985 5777555432 233455
Q ss_pred CCEEEEEecCCcCchhhHHHHHHHH
Q psy4724 134 KPMTFLFSDTQIQNEVFVEHINMLL 158 (1650)
Q Consensus 134 k~~vFl~tD~qI~~E~fLedIN~lL 158 (1650)
+| |.+|+=+-+ |++||.++|
T Consensus 261 k~-vlvl~PN~v----FleYis~VL 280 (747)
T COG3973 261 KP-VLVLGPNRV----FLEYISRVL 280 (747)
T ss_pred Cc-eEEEcCcHH----HHHHHHHhc
Confidence 56 667776665 999999986
No 103
>PRK13949 shikimate kinase; Provisional
Probab=81.07 E-value=3.2 Score=44.94 Aligned_cols=51 Identities=12% Similarity=0.216 Sum_probs=36.7
Q ss_pred ceEEEecCCchhhhHHHHHHHhcCCceEEEEEc-------------ccCCcchhHHHHHHHHHH
Q psy4724 77 HAMLITIGGSGAAEVTKLATFMNEYVLFEIEIL-------------KTYGLTDWRDDLCRLMKK 127 (1650)
Q Consensus 77 ~alLvGvgGSGrqSLtrLAafi~~~~~fqIeit-------------k~Yg~~~f~eDLk~l~~~ 127 (1650)
+.+|||..||||.|++|..|-..++.++....- ..+|...|++--..++..
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~~~~id~D~~i~~~~~~~~~~~~~~~g~~~fr~~e~~~l~~ 66 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELGLSFIDLDFFIENRFHKTVGDIFAERGEAVFRELERNMLHE 66 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCeecccHHHHHHHCccHHHHHHHhCHHHHHHHHHHHHHH
Confidence 578999999999999998887767766655421 245566777766566555
No 104
>PRK10884 SH3 domain-containing protein; Provisional
Probab=81.01 E-value=35 Score=38.09 Aligned_cols=75 Identities=9% Similarity=0.152 Sum_probs=48.1
Q ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4724 746 EVYDRVIKIVGPKKAKLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKLERAEK 823 (1650)
Q Consensus 746 ~~Y~~v~~~v~P~~~~l~~~e~~l~~~~~~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~~ 823 (1650)
..+-.+-++++-.+++++++..+... ...+.++++++.+..+.+|+.++++..++.+.++++.+.++..+++.+.
T Consensus 93 ~rlp~le~el~~l~~~l~~~~~~~~~---~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~ 167 (206)
T PRK10884 93 TRVPDLENQVKTLTDKLNNIDNTWNQ---RTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQR 167 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556666666666666655443 3334455566666667777777777777777777777777776666665
No 105
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=80.93 E-value=9.5 Score=45.99 Aligned_cols=82 Identities=22% Similarity=0.292 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhccHHHHH
Q psy4724 760 AKLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKLERAEKLIGGLGGEKTRWSEAS 839 (1650)
Q Consensus 760 ~~l~~~e~~l~~~~~~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~~Li~~L~~E~~rW~~~~ 839 (1650)
.+|+.+.+++......++..+.++.+++++++.++...++...++.++..+++.++..++.... -=..|..+.+..+
T Consensus 209 ~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r~---~t~~Ev~~Lk~~~ 285 (325)
T PF08317_consen 209 EELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIREECRG---WTRSEVKRLKAKV 285 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CCHHHHHHHHHHH
Confidence 5677777777777777777777777777777777777777777777777777665554432211 1123444555555
Q ss_pred HHHHH
Q psy4724 840 ANLSK 844 (1650)
Q Consensus 840 ~~~~~ 844 (1650)
..++.
T Consensus 286 ~~Le~ 290 (325)
T PF08317_consen 286 DALEK 290 (325)
T ss_pred HHHHH
Confidence 44443
No 106
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=80.83 E-value=1.7 Score=52.65 Aligned_cols=43 Identities=14% Similarity=0.099 Sum_probs=38.6
Q ss_pred CCCCceEEEecCCchhhhHHHHHHHhcCCceEEEEEcccCCcc
Q psy4724 73 QPKGHAMLITIGGSGAAEVTKLATFMNEYVLFEIEILKTYGLT 115 (1650)
Q Consensus 73 ~p~G~alLvGvgGSGrqSLtrLAafi~~~~~fqIeitk~Yg~~ 115 (1650)
.-+||.||.|+.|.||..|+|..|...+..++.|..+..+.-.
T Consensus 41 ~~~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~ 83 (329)
T COG0714 41 LAGGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPS 83 (329)
T ss_pred HcCCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHH
Confidence 3489999999999999999999999999999999999776544
No 107
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=80.82 E-value=7.2 Score=50.91 Aligned_cols=96 Identities=14% Similarity=0.243 Sum_probs=56.1
Q ss_pred HHHHH-HHHHhcCCC-Cc-eEEEecCCchhhhHHHHHHHhcCC--------------------------------ceEEE
Q psy4724 62 QHISR-LCRILQQPK-GH-AMLITIGGSGAAEVTKLATFMNEY--------------------------------VLFEI 106 (1650)
Q Consensus 62 ~Hv~r-I~Ril~~p~-G~-alLvGvgGSGrqSLtrLAafi~~~--------------------------------~~fqI 106 (1650)
+|+.+ +.+.++..+ +| .|+.|..|+||.|++|+-|-.-.| ++..+
T Consensus 22 e~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~~~g~~~n~~~~ 101 (620)
T PRK14954 22 EHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDFDAGTSLNISEF 101 (620)
T ss_pred HHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHHhccCCCCeEEe
Confidence 44433 555666543 57 458899999999999865533333 23344
Q ss_pred EEcccCCcchhHHHHHHHHHHhccCCCCCEEEEEecCCcCchhhHHHHHHHHhhhh
Q psy4724 107 EILKTYGLTDWRDDLCRLMKKSGGKDAKPMTFLFSDTQIQNEVFVEHINMLLNTAR 162 (1650)
Q Consensus 107 eitk~Yg~~~f~eDLk~l~~~~g~~~~k~~vFl~tD~qI~~E~fLedIN~lL~tge 162 (1650)
+-....++.+.|+.+..+..+ . ..+..-|+++.|.+-... +..|.||.+=|
T Consensus 102 d~~s~~~vd~Ir~l~e~~~~~-P-~~~~~KVvIIdEad~Lt~---~a~naLLK~LE 152 (620)
T PRK14954 102 DAASNNSVDDIRQLRENVRYG-P-QKGRYRVYIIDEVHMLST---AAFNAFLKTLE 152 (620)
T ss_pred cccccCCHHHHHHHHHHHHhh-h-hcCCCEEEEEeChhhcCH---HHHHHHHHHHh
Confidence 433445556666544333322 3 345667888888665432 34677777643
No 108
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=80.76 E-value=1.6 Score=44.41 Aligned_cols=33 Identities=18% Similarity=0.222 Sum_probs=23.1
Q ss_pred ceEEEecCCchhhhHHHHHHHhcCCceEEEEEc
Q psy4724 77 HAMLITIGGSGAAEVTKLATFMNEYVLFEIEIL 109 (1650)
Q Consensus 77 ~alLvGvgGSGrqSLtrLAafi~~~~~fqIeit 109 (1650)
|+||.|+.|.||.+|+|.-|-..|..+-.|..|
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~t 33 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFT 33 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEec
Confidence 899999999999999999888889888878765
No 109
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=80.33 E-value=3.5 Score=44.73 Aligned_cols=69 Identities=10% Similarity=0.218 Sum_probs=45.3
Q ss_pred CCceEEEecCCchhhhHHHHHHHhcCCceEEEEE-------------cccCCcchhHHHHHHHHHHhccCCCCCEEEEEe
Q psy4724 75 KGHAMLITIGGSGAAEVTKLATFMNEYVLFEIEI-------------LKTYGLTDWRDDLCRLMKKSGGKDAKPMTFLFS 141 (1650)
Q Consensus 75 ~G~alLvGvgGSGrqSLtrLAafi~~~~~fqIei-------------tk~Yg~~~f~eDLk~l~~~~g~~~~k~~vFl~t 141 (1650)
..+.+|||..||||.||++..+-..++.++...- ...||...|++.=.+++.... ....+|+-.+
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~~i~~~~g~~i~~~~~~~g~~~fr~~e~~~l~~l~--~~~~~vi~~g 81 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTGADIGWVFDVEGEEGFRDREEKVINELT--EKQGIVLATG 81 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCchHHHHhCcCHhHHHHHhCHHHHHHHHHHHHHHHH--hCCCEEEEcC
Confidence 4578999999999999999988777777665531 123566677765556665543 2344554444
Q ss_pred cCCc
Q psy4724 142 DTQI 145 (1650)
Q Consensus 142 D~qI 145 (1650)
-.-+
T Consensus 82 gg~v 85 (172)
T PRK05057 82 GGSV 85 (172)
T ss_pred Cchh
Confidence 4434
No 110
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=80.09 E-value=6.3 Score=47.50 Aligned_cols=82 Identities=22% Similarity=0.227 Sum_probs=55.6
Q ss_pred CceE-EEecCCchhhhHHH-HHHHh-cCC----------------------ceEEEEEc---ccCCcchhHHHHHHHHHH
Q psy4724 76 GHAM-LITIGGSGAAEVTK-LATFM-NEY----------------------VLFEIEIL---KTYGLTDWRDDLCRLMKK 127 (1650)
Q Consensus 76 G~al-LvGvgGSGrqSLtr-LAafi-~~~----------------------~~fqIeit---k~Yg~~~f~eDLk~l~~~ 127 (1650)
.||+ +.|..|.||.++++ ||.++ |.. +++.|+.. +..++.+.|+=++.+..
T Consensus 22 ~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR~l~~~~~~- 100 (328)
T PRK05707 22 PHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVRELVSFVVQ- 100 (328)
T ss_pred ceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHHHHHHHHhh-
Confidence 5766 68999999999986 45444 321 56777653 45888888874434444
Q ss_pred hccCCCCCEEEEEecCCcCchhhHHHHHHHHhhhh
Q psy4724 128 SGGKDAKPMTFLFSDTQIQNEVFVEHINMLLNTAR 162 (1650)
Q Consensus 128 ~g~~~~k~~vFl~tD~qI~~E~fLedIN~lL~tge 162 (1650)
.. ..++.-|+++.+.+=.++ +-.|.+|.|=|
T Consensus 101 ~~-~~~~~kv~iI~~a~~m~~---~aaNaLLK~LE 131 (328)
T PRK05707 101 TA-QLGGRKVVLIEPAEAMNR---NAANALLKSLE 131 (328)
T ss_pred cc-ccCCCeEEEECChhhCCH---HHHHHHHHHHh
Confidence 44 356667778888886544 56799998854
No 111
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=79.88 E-value=8.1 Score=46.16 Aligned_cols=8 Identities=38% Similarity=0.252 Sum_probs=3.3
Q ss_pred HHHhcCCC
Q psy4724 859 IITYLGAF 866 (1650)
Q Consensus 859 ~i~Y~G~f 866 (1650)
.|.+=|+|
T Consensus 143 ~I~hdG~f 150 (314)
T PF04111_consen 143 HIWHDGPF 150 (314)
T ss_dssp -EEEETTE
T ss_pred eEeecCCe
Confidence 34444443
No 112
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=79.64 E-value=4.4 Score=54.24 Aligned_cols=89 Identities=12% Similarity=0.258 Sum_probs=54.6
Q ss_pred Cc-ceeehHHHHHHHHHHHHHhcC-CCCceEEEecCCchhhhHHHHHHHh----------cCCceEEEEEcc-cCC---c
Q psy4724 51 PI-DIVTFLYIIQHISRLCRILQQ-PKGHAMLITIGGSGAAEVTKLATFM----------NEYVLFEIEILK-TYG---L 114 (1650)
Q Consensus 51 ~m-~lVlF~~ai~Hv~rI~Ril~~-p~G~alLvGvgGSGrqSLtrLAafi----------~~~~~fqIeitk-~Yg---~ 114 (1650)
++ +++=-++-|..+. ++|+. -..|.||+|..|+||.++++--+.- .++.++.+.++. -.| .
T Consensus 184 ~~~~liGR~~ei~~~i---~iL~r~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~~~llaG~~~~ 260 (758)
T PRK11034 184 GIDPLIGREKELERAI---QVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYR 260 (758)
T ss_pred CCCcCcCCCHHHHHHH---HHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccHHHHhcccchh
Confidence 44 3555555555554 45544 3579999999999999999876642 366777665442 112 2
Q ss_pred chhHHHHHHHHHHhccCCCCCEEEEEecCC
Q psy4724 115 TDWRDDLCRLMKKSGGKDAKPMTFLFSDTQ 144 (1650)
Q Consensus 115 ~~f~eDLk~l~~~~g~~~~k~~vFl~tD~q 144 (1650)
.+|.+-++.++..+- +.++.++++.|-|
T Consensus 261 Ge~e~rl~~l~~~l~--~~~~~ILfIDEIh 288 (758)
T PRK11034 261 GDFEKRFKALLKQLE--QDTNSILFIDEIH 288 (758)
T ss_pred hhHHHHHHHHHHHHH--hcCCCEEEeccHH
Confidence 367777777776543 2334455555544
No 113
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=79.63 E-value=5 Score=49.25 Aligned_cols=35 Identities=14% Similarity=0.268 Sum_probs=29.8
Q ss_pred CCceEEEecCCchhhhHHHHHHHhcCCceEEEEEc
Q psy4724 75 KGHAMLITIGGSGAAEVTKLATFMNEYVLFEIEIL 109 (1650)
Q Consensus 75 ~G~alLvGvgGSGrqSLtrLAafi~~~~~fqIeit 109 (1650)
.+|.||+|+.|+||.+|+|.-|-..+..++.+..+
T Consensus 50 ~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t 84 (443)
T PRK05201 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEAT 84 (443)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCChheeecch
Confidence 48999999999999999987777778888888654
No 114
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=79.31 E-value=18 Score=41.47 Aligned_cols=66 Identities=20% Similarity=0.330 Sum_probs=52.7
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4724 755 VGPKKAKLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKLER 820 (1650)
Q Consensus 755 v~P~~~~l~~~e~~l~~~~~~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~r 820 (1650)
+.-...++.+++.....++.++..+..++.++..++..++++.++..++..+|+.+++.++.++..
T Consensus 33 i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~ 98 (265)
T COG3883 33 IQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVE 98 (265)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667788888888888888888888888888888888888888888888888888888777643
No 115
>PRK13947 shikimate kinase; Provisional
Probab=79.30 E-value=4.6 Score=43.63 Aligned_cols=31 Identities=19% Similarity=0.315 Sum_probs=26.2
Q ss_pred ceEEEecCCchhhhHHHHHHHhcCCceEEEE
Q psy4724 77 HAMLITIGGSGAAEVTKLATFMNEYVLFEIE 107 (1650)
Q Consensus 77 ~alLvGvgGSGrqSLtrLAafi~~~~~fqIe 107 (1650)
|.+|+|+.||||.++++..|-..|+.++...
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d 33 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTD 33 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECc
Confidence 6899999999999999998887788766443
No 116
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=79.11 E-value=34 Score=30.23 Aligned_cols=64 Identities=16% Similarity=0.291 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhccHHHHHHHHHHHHhhchh
Q psy4724 781 AQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKLERAEKLIGGLGGEKTRWSEASANLSKALVNCIG 851 (1650)
Q Consensus 781 ~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~~Li~~L~~E~~rW~~~~~~~~~~~~~l~G 851 (1650)
.+++..-+.+.-|+.+.++...+...|.++.+ .|..-..+|..|...-+..-..-+.++..|.|
T Consensus 11 ~KiqqAvdTI~LLQmEieELKEknn~l~~e~q-------~~q~~reaL~~eneqlk~e~~~WQerlrsLLG 74 (79)
T COG3074 11 AKVQQAIDTITLLQMEIEELKEKNNSLSQEVQ-------NAQHQREALERENEQLKEEQNGWQERLRALLG 74 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444444444444444444433332 23333345555555555555555555555554
No 117
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=79.00 E-value=25 Score=32.19 Aligned_cols=68 Identities=18% Similarity=0.308 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhccHHHHHHH
Q psy4724 762 LAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKLERAEKLIGGLGGEKTRWSEASAN 841 (1650)
Q Consensus 762 l~~~e~~l~~~~~~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~~Li~~L~~E~~rW~~~~~~ 841 (1650)
++.++++...|-+...-.+.++.++.++-..|..+.+.+...+..|..+.+ .|..|+.-|++.+..
T Consensus 6 leqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~--------------qLk~E~~~WqerLr~ 71 (79)
T PRK15422 6 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENN--------------HLKEQQNGWQERLQA 71 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH--------------HHHHHHHHHHHHHHH
Confidence 455566666666666666666666666666666666555555555555543 344666777776655
Q ss_pred HH
Q psy4724 842 LS 843 (1650)
Q Consensus 842 ~~ 843 (1650)
+=
T Consensus 72 LL 73 (79)
T PRK15422 72 LL 73 (79)
T ss_pred HH
Confidence 43
No 118
>KOG0250|consensus
Probab=78.76 E-value=24 Score=47.47 Aligned_cols=66 Identities=20% Similarity=0.249 Sum_probs=43.8
Q ss_pred hHhhcCcc-chhhHHHH-HHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4724 732 IYLTASIP-FQVLAMEV-YDRVIKIVGPKKAKLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDEL 797 (1650)
Q Consensus 732 ~~~~~s~a-~Wv~A~~~-Y~~v~~~v~P~~~~l~~~e~~l~~~~~~L~~~~~~l~~~~~~l~~l~~~~ 797 (1650)
.-+.++.| +||-...+ |......+.-+++++..+++.++.........++.+.+++++++.+.++-
T Consensus 265 ~~Lk~k~~W~~V~~~~~ql~~~~~~i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~ 332 (1074)
T KOG0250|consen 265 EQLKAKMAWAWVNEVERQLNNQEEEIKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEV 332 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhh
Confidence 33445555 78877644 66777777777777777777777777777777766666666655544433
No 119
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=78.59 E-value=8 Score=50.65 Aligned_cols=102 Identities=14% Similarity=0.233 Sum_probs=60.9
Q ss_pred ceeehHHHHHHHHHHHHHhcC-CCCce-EEEecCCchhhhHHHHHHHhcC-------------------------CceEE
Q psy4724 53 DIVTFLYIIQHISRLCRILQQ-PKGHA-MLITIGGSGAAEVTKLATFMNE-------------------------YVLFE 105 (1650)
Q Consensus 53 ~lVlF~~ai~Hv~rI~Ril~~-p~G~a-lLvGvgGSGrqSLtrLAafi~~-------------------------~~~fq 105 (1650)
++|--+.+++++. +.++. ..+|+ ||.|..|+||.+++|+-+-.-. .++++
T Consensus 17 eiiGq~~~~~~L~---~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~i~~~~~~d~~~ 93 (585)
T PRK14950 17 ELVGQEHVVQTLR---NAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRAIAEGSAVDVIE 93 (585)
T ss_pred HhcCCHHHHHHHH---HHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHHHhcCCCCeEEE
Confidence 4555555555543 33333 34787 7899999999999986653211 23455
Q ss_pred EEEcccCCcchhHHHHHHHHHHhccCCCCCEEEEEecCCcCchhhHHHHHHHHhhhh
Q psy4724 106 IEILKTYGLTDWRDDLCRLMKKSGGKDAKPMTFLFSDTQIQNEVFVEHINMLLNTAR 162 (1650)
Q Consensus 106 Ieitk~Yg~~~f~eDLk~l~~~~g~~~~k~~vFl~tD~qI~~E~fLedIN~lL~tge 162 (1650)
|.-+..++..++|+ +...+.... ..+..-|+++.+.|-... +.+|.||.+-|
T Consensus 94 i~~~~~~~vd~ir~-ii~~~~~~p-~~~~~kVvIIDEa~~L~~---~a~naLLk~LE 145 (585)
T PRK14950 94 MDAASHTSVDDARE-IIERVQFRP-ALARYKVYIIDEVHMLST---AAFNALLKTLE 145 (585)
T ss_pred EeccccCCHHHHHH-HHHHHhhCc-ccCCeEEEEEeChHhCCH---HHHHHHHHHHh
Confidence 55545566666654 322222222 245667888888765443 45677777644
No 120
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=78.56 E-value=4.9 Score=54.76 Aligned_cols=103 Identities=14% Similarity=0.252 Sum_probs=62.6
Q ss_pred ceeehHHHHHHHHHHHHHh-------cCCCCceEEEecCCchhhhHHH-HHHHhcCC--ceEEEEEcccCCcchhHHH--
Q psy4724 53 DIVTFLYIIQHISRLCRIL-------QQPKGHAMLITIGGSGAAEVTK-LATFMNEY--VLFEIEILKTYGLTDWRDD-- 120 (1650)
Q Consensus 53 ~lVlF~~ai~Hv~rI~Ril-------~~p~G~alLvGvgGSGrqSLtr-LAafi~~~--~~fqIeitk~Yg~~~f~eD-- 120 (1650)
.++=-+.|+++|++..|.. +.|.|..||+|+.|+||..|++ ||..+-+. .+..+.+ ++|.+.
T Consensus 567 ~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dm------se~~~~~~ 640 (852)
T TIGR03345 567 RVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINM------SEFQEAHT 640 (852)
T ss_pred eEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeH------HHhhhhhh
Confidence 3666789999999887764 3477889999999999999996 55555432 3444432 222211
Q ss_pred HH---------------HHHHHhccCCCCCEEEEEecCCcCchhhHHHHHHHHhhhh
Q psy4724 121 LC---------------RLMKKSGGKDAKPMTFLFSDTQIQNEVFVEHINMLLNTAR 162 (1650)
Q Consensus 121 Lk---------------~l~~~~g~~~~k~~vFl~tD~qI~~E~fLedIN~lL~tge 162 (1650)
+. .++..+- .++...|++|.+=+=.+..+...+=.+|..|.
T Consensus 641 ~~~l~g~~~gyvg~~~~g~L~~~v-~~~p~svvllDEieka~~~v~~~Llq~ld~g~ 696 (852)
T TIGR03345 641 VSRLKGSPPGYVGYGEGGVLTEAV-RRKPYSVVLLDEVEKAHPDVLELFYQVFDKGV 696 (852)
T ss_pred hccccCCCCCcccccccchHHHHH-HhCCCcEEEEechhhcCHHHHHHHHHHhhcce
Confidence 11 1222232 23444677777765445555555555666654
No 121
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=78.52 E-value=8.8 Score=43.61 Aligned_cols=38 Identities=21% Similarity=0.214 Sum_probs=27.6
Q ss_pred cCCCCceEEEecCCchhhhHHHHHHHh-cCCceEEEEEc
Q psy4724 72 QQPKGHAMLITIGGSGAAEVTKLATFM-NEYVLFEIEIL 109 (1650)
Q Consensus 72 ~~p~G~alLvGvgGSGrqSLtrLAafi-~~~~~fqIeit 109 (1650)
..|..|+||-|..|+||.||.|-...- ++-.+.=|++.
T Consensus 49 G~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~ 87 (249)
T PF05673_consen 49 GLPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVS 87 (249)
T ss_pred CCCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEEC
Confidence 469999999999999999998865442 22234455555
No 122
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=78.47 E-value=44 Score=39.56 Aligned_cols=100 Identities=16% Similarity=0.203 Sum_probs=69.2
Q ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4724 745 MEVYDRVIKIVGPKKAKLAEAEADYAVQME-------KLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQK 817 (1650)
Q Consensus 745 ~~~Y~~v~~~v~P~~~~l~~~e~~l~~~~~-------~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~r 817 (1650)
+....++...+.-++.+|..++.+...++. +|...+.+-+.+++++.+++.+|..+.++..++.++...++.+
T Consensus 73 Vfqlddi~~qlr~~rtel~~a~~~k~~~e~er~~~~~El~~~r~e~~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtr 152 (499)
T COG4372 73 VFQLDDIRPQLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAKAQQELARLTKQAQDLQTR 152 (499)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566777777788888877777777666 6666666777778888888888888888888888888777777
Q ss_pred HHHHHHHHhhhchhhccHHHHHHHHHHHHhhchh
Q psy4724 818 LERAEKLIGGLGGEKTRWSEASANLSKALVNCIG 851 (1650)
Q Consensus 818 l~ra~~Li~~L~~E~~rW~~~~~~~~~~~~~l~G 851 (1650)
| ..|+.++..-..+.+.+....+.|-|
T Consensus 153 l-------~~l~~qr~ql~aq~qsl~a~~k~LQ~ 179 (499)
T COG4372 153 L-------KTLAEQRRQLEAQAQSLQASQKQLQA 179 (499)
T ss_pred H-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6 34555555555555555555554443
No 123
>PRK13946 shikimate kinase; Provisional
Probab=78.44 E-value=3.7 Score=45.10 Aligned_cols=70 Identities=19% Similarity=0.331 Sum_probs=45.1
Q ss_pred ceEEEecCCchhhhHHHHHHHhcCCceEEEEE-------------cccCCcchhHHHHHHHHHHhccCCCCCEEEEEecC
Q psy4724 77 HAMLITIGGSGAAEVTKLATFMNEYVLFEIEI-------------LKTYGLTDWRDDLCRLMKKSGGKDAKPMTFLFSDT 143 (1650)
Q Consensus 77 ~alLvGvgGSGrqSLtrLAafi~~~~~fqIei-------------tk~Yg~~~f~eDLk~l~~~~g~~~~k~~vFl~tD~ 143 (1650)
+.+|+|+.||||.++.+.-|--.|+.++.... -..||...|++--.+++.... ...++|+.-+.+
T Consensus 12 ~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D~~~~~~~g~~~~e~~~~~ge~~~~~~e~~~l~~l~--~~~~~Vi~~ggg 89 (184)
T PRK13946 12 TVVLVGLMGAGKSTVGRRLATMLGLPFLDADTEIERAARMTIAEIFAAYGEPEFRDLERRVIARLL--KGGPLVLATGGG 89 (184)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCeECcCHHHHHHhCCCHHHHHHHHCHHHHHHHHHHHHHHHH--hcCCeEEECCCC
Confidence 78999999999999999888766887665442 123556666554456666654 334565555445
Q ss_pred CcCch
Q psy4724 144 QIQNE 148 (1650)
Q Consensus 144 qI~~E 148 (1650)
-+...
T Consensus 90 ~~~~~ 94 (184)
T PRK13946 90 AFMNE 94 (184)
T ss_pred CcCCH
Confidence 44333
No 124
>KOG0994|consensus
Probab=78.21 E-value=48 Score=44.57 Aligned_cols=107 Identities=16% Similarity=0.183 Sum_probs=59.9
Q ss_pred HHHHHHhhhcCCCCCchhh------------------HhHhhcCccchhhHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Q psy4724 712 SMKQLQMFLNDYTTIPFDA------------------LIYLTASIPFQVLAMEVYDRVIKIVGPKKAKLAEAEADYAVQM 773 (1650)
Q Consensus 712 ~~~~l~~~l~~~~~~p~~~------------------l~~~~~s~a~Wv~A~~~Y~~v~~~v~P~~~~l~~~e~~l~~~~ 773 (1650)
.++.|.+|+.+++..|... +.-+.+.|..=|.++-+-..|....++-..+.+.++.....+.
T Consensus 1476 Li~~v~~Flt~~~adp~si~~vA~~vL~l~lp~tpeqi~~L~~~I~e~v~sL~nVd~IL~~T~~di~ra~~L~s~A~~a~ 1555 (1758)
T KOG0994|consen 1476 LIQQVRDFLTQPDADPDSIEEVAEEVLALELPLTPEQIQQLTGEIQERVASLPNVDAILSRTKGDIARAENLQSEAERAR 1555 (1758)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcccHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 5556666666665555321 1222233334455555556666666777777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4724 774 EKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKL 818 (1650)
Q Consensus 774 ~~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl 818 (1650)
..-...+.....|.+.|++-...+..++.-++.....+..++..|
T Consensus 1556 ~~A~~v~~~ae~V~eaL~~Ad~Aq~~a~~ai~~a~~~~~~a~~~l 1600 (1758)
T KOG0994|consen 1556 SRAEDVKGQAEDVVEALEEADVAQGEAQDAIQGADRDIRLAQQLL 1600 (1758)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 666666666666666666665555555444444444443333333
No 125
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=78.13 E-value=5.7 Score=53.88 Aligned_cols=86 Identities=16% Similarity=0.171 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHH--Hhc-CCCC-ceEEEecCCchhhhHHHHHHHhcCCceEEEEEcccCCcchhH-----------HHHH
Q psy4724 58 LYIIQHISRLCR--ILQ-QPKG-HAMLITIGGSGAAEVTKLATFMNEYVLFEIEILKTYGLTDWR-----------DDLC 122 (1650)
Q Consensus 58 ~~ai~Hv~rI~R--il~-~p~G-~alLvGvgGSGrqSLtrLAafi~~~~~fqIeitk~Yg~~~f~-----------eDLk 122 (1650)
++|.+.|.+... .++ .++| +.||+|+.|+||.|+++.-|-..+..++.+.+.-..+..+++ ..+.
T Consensus 326 ~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~~~~~g~~~g~i~ 405 (775)
T TIGR00763 326 KKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHRRTYVGAMPGRII 405 (775)
T ss_pred HHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCCCceeCCCCchHH
Confidence 556666665322 222 2345 799999999999999998777777788777654221111111 1344
Q ss_pred HHHHHhccCCCCCEEEEEecCCcC
Q psy4724 123 RLMKKSGGKDAKPMTFLFSDTQIQ 146 (1650)
Q Consensus 123 ~l~~~~g~~~~k~~vFl~tD~qI~ 146 (1650)
..+..++ . ..| |++|.+-+-.
T Consensus 406 ~~l~~~~-~-~~~-villDEidk~ 426 (775)
T TIGR00763 406 QGLKKAK-T-KNP-LFLLDEIDKI 426 (775)
T ss_pred HHHHHhC-c-CCC-EEEEechhhc
Confidence 5566666 2 334 5667664433
No 126
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=78.05 E-value=23 Score=36.39 Aligned_cols=77 Identities=25% Similarity=0.372 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhc---cHHH
Q psy4724 761 KLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKLERAEKLIGGLGGEKT---RWSE 837 (1650)
Q Consensus 761 ~l~~~e~~l~~~~~~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~~Li~~L~~E~~---rW~~ 837 (1650)
++..+...++.++..+...+..+......|..|+.......+....|..+.+.+...+.+.++-|.-|-.|.+ ||..
T Consensus 20 ~~~~l~~~~~~a~~~~~~~~~~l~~~~~qL~~l~~~a~~~~~~Q~~Lr~~~~~~~~~l~~re~~i~rL~~ENe~lR~Wa~ 99 (135)
T TIGR03495 20 RLRNARADLERANRVLKAQQAELASKANQLIVLLALAKRNEEAQAQLRQQLAQARALLAQREQRIERLKRENEDLRRWAD 99 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHhc
Confidence 4566778888888888888889999999999999999999999999999999999999999999999988876 7754
No 127
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=77.99 E-value=43 Score=38.20 Aligned_cols=179 Identities=20% Similarity=0.242 Sum_probs=108.6
Q ss_pred cCCCcccccCchhHHHHHHH----HhccCCcEEEecCC----hhHHHHHHHHHHcCCeEEEecccccccccchHHHhHHH
Q psy4724 928 NSNKWPLLIDPQGQANKWLK----NVEKGNLSVVKLTD----ATLLRTLERAIRTGTAVLLENIQETIDSSLEPVLLKSY 999 (1650)
Q Consensus 928 ~~~r~PLlIDPq~qa~~wik----~~~~~~l~v~~~~~----~~~~~~le~ai~~G~~vlie~v~e~~dp~l~p~L~~~~ 999 (1650)
+...-+.++=|.|-+..=.- ++.+..+.|...++ ..+.+.+.-+++.|.-+.++++ +.+++..-.++..++
T Consensus 30 ~~~~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~~~~l~ril~G~~~~GaW~cfdef-nrl~~~vLS~i~~~i 108 (231)
T PF12774_consen 30 SLNLGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMDYQSLSRILKGLAQSGAWLCFDEF-NRLSEEVLSVISQQI 108 (231)
T ss_dssp CTTTEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-HHHHHHHHHHHHHHT-EEEEETC-CCSSHHHHHHHHHHH
T ss_pred ccCCCCCCcCCCCCCchhHHHHHHHHhCCeEEEecccccccHHHHHHHHHHHhhcCchhhhhhh-hhhhHHHHHHHHHHH
Confidence 34456677888776654432 23333355555432 3456788899999999999999 799988888877654
Q ss_pred Hh-----hcCeEEEEecCeeeeecCCeeEEEEeCC---CCCCCCcccccceEEEEeeeChhhHHHHHHHHHHHhhCCcHH
Q psy4724 1000 YK-----IQNQLIMTLNNKEIEYNIKFRLYITTRL---KNPHYIPEILTKITLINFMITPQGLQNQLLGIVVAKEKPDLE 1071 (1650)
Q Consensus 1000 ~~-----~~~~~~i~ig~~~i~~~~~FrL~l~Tk~---~np~~~pe~~~~~tvinf~vt~~gLe~qlL~~vv~~e~peLe 1071 (1650)
.. ..+...+.+.+++|..+|++.+|+|..- .+.++|+.+......|.+. .||+.
T Consensus 109 ~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~lFRpvam~------------------~PD~~ 170 (231)
T PF12774_consen 109 QSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPENLKALFRPVAMM------------------VPDLS 170 (231)
T ss_dssp HHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC--S-HHHCTTEEEEE--------------------S--HH
T ss_pred HHHHHhhcccccccccCCCEEEEccceeEEEeeccccCCcccCCHhHHHHhheeEEe------------------CCCHH
Confidence 32 3556678899999999999999998842 2346677777777777764 45443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q psy4724 1072 TKKNELIIESANNKKILKETEDKILEVLSSSQGNILEDESAVQILTSSKVLSAEITAKQEISSRTEKEIDDARMMYIPVS 1151 (1650)
Q Consensus 1072 ~~~~~l~~~~~~~k~~L~~lEd~lL~~L~~s~g~iLdd~~li~~L~~sK~~~~~i~~~l~~~~~~~~~i~~~r~~y~pvA 1151 (1650)
.|.+.+-.+.|- .| .+.+|
T Consensus 171 ----------------------~I~ei~L~s~GF--~~-------------------------------------a~~La 189 (231)
T PF12774_consen 171 ----------------------LIAEILLLSQGF--KD-------------------------------------AKSLA 189 (231)
T ss_dssp ----------------------HHHHHHHHCCCT--SS-------------------------------------HHHHH
T ss_pred ----------------------HHHHHHHHHcCc--hh-------------------------------------HHHHH
Confidence 122333345552 11 13466
Q ss_pred HHHHHHHHHHHHhhcCCcccccCHHHHHHHHHHhh
Q psy4724 1152 KHSSVLFFCCAELSNIDPMYQYSLNWFINLYVQSI 1186 (1650)
Q Consensus 1152 ~~~s~lyf~l~~L~~i~~mYq~Sl~~f~~lf~~~i 1186 (1650)
.+-..+|-.+.++-.-.+-|.|+|.....++..|-
T Consensus 190 ~kl~~l~~l~~~~lS~q~hydfgLRalk~vl~~a~ 224 (231)
T PF12774_consen 190 KKLVSLFQLCKEQLSKQDHYDFGLRALKSVLRMAG 224 (231)
T ss_dssp HHHHHHHHHHHHCS-SSTT---SHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccCccccccHHHHHHHHHHHH
Confidence 66677787777766667789999999888776653
No 128
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=77.94 E-value=11 Score=47.99 Aligned_cols=83 Identities=20% Similarity=0.332 Sum_probs=53.4
Q ss_pred CCce-EEEecCCchhhhHHHHHHHhcCC------------------------ceEEEEEcccCCcchhHHHHHHHHHHhc
Q psy4724 75 KGHA-MLITIGGSGAAEVTKLATFMNEY------------------------VLFEIEILKTYGLTDWRDDLCRLMKKSG 129 (1650)
Q Consensus 75 ~G~a-lLvGvgGSGrqSLtrLAafi~~~------------------------~~fqIeitk~Yg~~~f~eDLk~l~~~~g 129 (1650)
-+|| ||.|..|+||.|++|+-|-.-.| ++++|..+.+-|..+.|+ +........
T Consensus 37 i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~eidaas~~gvd~ir~-I~~~~~~~P 115 (486)
T PRK14953 37 VSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIEIDAASNRGIDDIRA-LRDAVSYTP 115 (486)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEEEeCccCCCHHHHHH-HHHHHHhCc
Confidence 3687 57999999999999986553221 355555444556665553 444444444
Q ss_pred cCCCCCEEEEEecCCcCchhhHHHHHHHHhhhh
Q psy4724 130 GKDAKPMTFLFSDTQIQNEVFVEHINMLLNTAR 162 (1650)
Q Consensus 130 ~~~~k~~vFl~tD~qI~~E~fLedIN~lL~tge 162 (1650)
..++.-|+++.+.+-... +-+|.||.+=+
T Consensus 116 -~~~~~KVvIIDEad~Lt~---~a~naLLk~LE 144 (486)
T PRK14953 116 -IKGKYKVYIIDEAHMLTK---EAFNALLKTLE 144 (486)
T ss_pred -ccCCeeEEEEEChhhcCH---HHHHHHHHHHh
Confidence 456778999999875432 34577776644
No 129
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=77.91 E-value=5.5 Score=49.29 Aligned_cols=33 Identities=18% Similarity=0.184 Sum_probs=26.4
Q ss_pred CCceEEEecCCchhhhHHHHHHHhcCCceEEEE
Q psy4724 75 KGHAMLITIGGSGAAEVTKLATFMNEYVLFEIE 107 (1650)
Q Consensus 75 ~G~alLvGvgGSGrqSLtrLAafi~~~~~fqIe 107 (1650)
.||.||+|+.||||.+|+|.-|-..+..+..+.
T Consensus 116 ~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~d 148 (413)
T TIGR00382 116 KSNILLIGPTGSGKTLLAQTLARILNVPFAIAD 148 (413)
T ss_pred CceEEEECCCCcCHHHHHHHHHHhcCCCeEEec
Confidence 589999999999999999987766565554443
No 130
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=77.59 E-value=34 Score=31.27 Aligned_cols=58 Identities=14% Similarity=0.220 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4724 761 KLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKL 818 (1650)
Q Consensus 761 ~l~~~e~~l~~~~~~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl 818 (1650)
-+++++.++..+-......+.++.++.++-..|..+-+....+-++|+.+.+..+.|+
T Consensus 5 ~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl 62 (72)
T PF06005_consen 5 LLEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERL 62 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666666666666666666555555555555554444444333
No 131
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=77.51 E-value=41 Score=37.05 Aligned_cols=112 Identities=18% Similarity=0.233 Sum_probs=49.2
Q ss_pred hcCcc-chhhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4724 735 TASIP-FQVLAMEVYDRVIKIVGPKKAKLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIEL 813 (1650)
Q Consensus 735 ~~s~a-~Wv~A~~~Y~~v~~~v~P~~~~l~~~e~~l~~~~~~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~ 813 (1650)
+|+.. +|.-.-.........+.-++.+++.++..+...+..+......-.+-+++ ..+-+++++...+...|+.+++.
T Consensus 50 iGssn~YWsFps~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~~eR-~~~l~~l~~l~~~~~~l~~el~~ 128 (188)
T PF03962_consen 50 IGSSNYYWSFPSQAKQKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREESEER-EELLEELEELKKELKELKKELEK 128 (188)
T ss_pred ccCeeEEEecChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555 88766555555555555555555555555555555554443322222111 11223333333333333333332
Q ss_pred HH----HHHHHHHHHHhhhchhhccHHHHHHHHHHHHh
Q psy4724 814 CK----QKLERAEKLIGGLGGEKTRWSEASANLSKALV 847 (1650)
Q Consensus 814 ~~----~rl~ra~~Li~~L~~E~~rW~~~~~~~~~~~~ 847 (1650)
.. .+++.-..-+..+-..-.||+..+-.+..-+.
T Consensus 129 ~~~~Dp~~i~~~~~~~~~~~~~anrwTDNI~~l~~~~~ 166 (188)
T PF03962_consen 129 YSENDPEKIEKLKEEIKIAKEAANRWTDNIFSLKSYLK 166 (188)
T ss_pred HHhcCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 11 12222222223333344577776665554443
No 132
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=77.25 E-value=8.3 Score=52.13 Aligned_cols=66 Identities=18% Similarity=0.290 Sum_probs=47.6
Q ss_pred CCCceEEEecCCchhhhHHHHHHHhcCCceEEEEEc----ccCCcchhHHHHHHHHHHhccCCCCCEEEEEecC
Q psy4724 74 PKGHAMLITIGGSGAAEVTKLATFMNEYVLFEIEIL----KTYGLTDWRDDLCRLMKKSGGKDAKPMTFLFSDT 143 (1650)
Q Consensus 74 p~G~alLvGvgGSGrqSLtrLAafi~~~~~fqIeit----k~Yg~~~f~eDLk~l~~~~g~~~~k~~vFl~tD~ 143 (1650)
|..+.||.|..|+||.+|+|.-|...+..++.|..+ +.+|.. .+.++.++..+. .+.|.++++.|-
T Consensus 211 ~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~~~g~~--~~~l~~lf~~a~--~~~p~il~iDEi 280 (733)
T TIGR01243 211 PPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSKYYGES--EERLREIFKEAE--ENAPSIIFIDEI 280 (733)
T ss_pred CCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhcccccHH--HHHHHHHHHHHH--hcCCcEEEeehh
Confidence 344689999999999999999888888887777532 333433 467888888775 456666666664
No 133
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=77.14 E-value=19 Score=39.20 Aligned_cols=53 Identities=21% Similarity=0.204 Sum_probs=22.1
Q ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4724 748 YDRVIKIVGPKKAKLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQK 800 (1650)
Q Consensus 748 Y~~v~~~v~P~~~~l~~~e~~l~~~~~~L~~~~~~l~~~~~~l~~l~~~~~~~ 800 (1650)
|..+.....-.+.++++.+++-.+...+|..++.++.++++++..|+.+....
T Consensus 130 ~~d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~L 182 (290)
T COG4026 130 YMDLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRL 182 (290)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44443333334444444444444444444444444444444444444333333
No 134
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=76.89 E-value=27 Score=44.18 Aligned_cols=89 Identities=12% Similarity=0.172 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhccHHHHH
Q psy4724 760 AKLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKLERAEKLIGGLGGEKTRWSEAS 839 (1650)
Q Consensus 760 ~~l~~~e~~l~~~~~~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~~Li~~L~~E~~rW~~~~ 839 (1650)
.++++.+++...........+.++..+.+++..|+.++.....+.+.|+.+.+......+.+..=...|..+.......+
T Consensus 143 ~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri 222 (546)
T PF07888_consen 143 NQLEECQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEARQRI 222 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444455555555555555666666666665555555555555555554444444444444444444444
Q ss_pred HHHHHHHhh
Q psy4724 840 ANLSKALVN 848 (1650)
Q Consensus 840 ~~~~~~~~~ 848 (1650)
..++..+..
T Consensus 223 ~~LEedi~~ 231 (546)
T PF07888_consen 223 RELEEDIKT 231 (546)
T ss_pred HHHHHHHHH
Confidence 444444433
No 135
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=76.81 E-value=13 Score=42.28 Aligned_cols=96 Identities=19% Similarity=0.195 Sum_probs=68.8
Q ss_pred HHHHHHHhcCCCCceEEEecCCchhhhHHH-HHHHhcCCceEEEEEcc-cCCcchhHHHH----H---------------
Q psy4724 64 ISRLCRILQQPKGHAMLITIGGSGAAEVTK-LATFMNEYVLFEIEILK-TYGLTDWRDDL----C--------------- 122 (1650)
Q Consensus 64 v~rI~Ril~~p~G~alLvGvgGSGrqSLtr-LAafi~~~~~fqIeitk-~Yg~~~f~eDL----k--------------- 122 (1650)
|.+|+--++.-+|-++++|.-||||..+.| +++-..+-++--|-+.+ +.+...+.+-+ .
T Consensus 40 l~~l~~~i~d~qg~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~ 119 (269)
T COG3267 40 LLMLHAAIADGQGILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQID 119 (269)
T ss_pred HHHHHHHHhcCCceEEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHH
Confidence 677888889999999999999999999999 55666666665555553 44444444332 1
Q ss_pred HHHHHhccCCCCC-EEEEEecCCcCchhhHHHHHHHHhh
Q psy4724 123 RLMKKSGGKDAKP-MTFLFSDTQIQNEVFVEHINMLLNT 160 (1650)
Q Consensus 123 ~l~~~~g~~~~k~-~vFl~tD~qI~~E~fLedIN~lL~t 160 (1650)
+.+...- .+|++ ++.+..|+|+.+.+-||....+.|-
T Consensus 120 ~~L~al~-~~g~r~v~l~vdEah~L~~~~le~Lrll~nl 157 (269)
T COG3267 120 RELAALV-KKGKRPVVLMVDEAHDLNDSALEALRLLTNL 157 (269)
T ss_pred HHHHHHH-HhCCCCeEEeehhHhhhChhHHHHHHHHHhh
Confidence 2222222 45565 9999999999999999988877553
No 136
>KOG0730|consensus
Probab=76.80 E-value=7.8 Score=49.37 Aligned_cols=95 Identities=19% Similarity=0.349 Sum_probs=74.2
Q ss_pred CccccCCHHHHHHHHHHHHHHHhccCCCCCcceeehHHHHHHHHHHHHHh-cCCCCceEEEecCCchhhhHHHHHHHhcC
Q psy4724 22 VYDEIDNLDLLTEKINQYIVDYNTQNSNKPIDIVTFLYIIQHISRLCRIL-QQPKGHAMLITIGGSGAAEVTKLATFMNE 100 (1650)
Q Consensus 22 ~Y~~~~~~~~l~~~l~~~l~~yN~~~~~~~m~lVlF~~ai~Hv~rI~Ril-~~p~G~alLvGvgGSGrqSLtrLAafi~~ 100 (1650)
.+++|..++.++..|++..+ +.++|--.-.|.= +.|+| .||-|++|+||.+++|-.|--|+
T Consensus 432 ~W~dIGGlE~lK~elq~~V~-----------------~p~~~pe~F~r~Gi~ppkG-VLlyGPPGC~KT~lAkalAne~~ 493 (693)
T KOG0730|consen 432 SWDDIGGLEELKRELQQAVE-----------------WPLKHPEKFARFGISPPKG-VLLYGPPGCGKTLLAKALANEAG 493 (693)
T ss_pred ChhhccCHHHHHHHHHHHHh-----------------hhhhchHHHHHhcCCCCce-EEEECCCCcchHHHHHHHhhhhc
Confidence 35667778888887776533 4566766667764 55666 78999999999999999999999
Q ss_pred CceEEE----EEcccCCcchhHHHHHHHHHHhccCCCCCEEE
Q psy4724 101 YVLFEI----EILKTYGLTDWRDDLCRLMKKSGGKDAKPMTF 138 (1650)
Q Consensus 101 ~~~fqI----eitk~Yg~~~f~eDLk~l~~~~g~~~~k~~vF 138 (1650)
+.+..| -.++-||..| ..|+.++.+|- +..|++.
T Consensus 494 ~nFlsvkgpEL~sk~vGeSE--r~ir~iF~kAR--~~aP~Ii 531 (693)
T KOG0730|consen 494 MNFLSVKGPELFSKYVGESE--RAIREVFRKAR--QVAPCII 531 (693)
T ss_pred CCeeeccCHHHHHHhcCchH--HHHHHHHHHHh--hcCCeEE
Confidence 999999 6788899986 56888999986 5667443
No 137
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=76.59 E-value=1.1e+02 Score=40.86 Aligned_cols=137 Identities=14% Similarity=0.266 Sum_probs=86.3
Q ss_pred cccCchhHHHHHHHH-----hccCCcEEEecCChhHHH---------------------HHHHHHHcC-C-eEEEecccc
Q psy4724 934 LLIDPQGQANKWLKN-----VEKGNLSVVKLTDATLLR---------------------TLERAIRTG-T-AVLLENIQE 985 (1650)
Q Consensus 934 LlIDPq~qa~~wik~-----~~~~~l~v~~~~~~~~~~---------------------~le~ai~~G-~-~vlie~v~e 985 (1650)
|+.=|.|.|.+=+.+ ++++.-..++++.+.|+. +|..|+|.- . .||+..| |
T Consensus 525 lF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVSrLIGaPPGYVGyeeGG~LTEaVRr~PySViLlDEI-E 603 (786)
T COG0542 525 LFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEI-E 603 (786)
T ss_pred EeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHHHHHhCCCCCCceeccccchhHhhhcCCCeEEEechh-h
Confidence 789999999888765 333334566777777764 666788765 4 4667777 8
Q ss_pred cccccchHHHhHHHHhhcCeEEEEecCeeeeecCCeeEEEEeCCCCCCCCcccccceEEEEeeeChhhHHHHHHHHHHHh
Q psy4724 986 TIDSSLEPVLLKSYYKIQNQLIMTLNNKEIEYNIKFRLYITTRLKNPHYIPEILTKITLINFMITPQGLQNQLLGIVVAK 1065 (1650)
Q Consensus 986 ~~dp~l~p~L~~~~~~~~~~~~i~ig~~~i~~~~~FrL~l~Tk~~np~~~pe~~~~~tvinf~vt~~gLe~qlL~~vv~~ 1065 (1650)
.-+|-+..+|.. +...| +. --=.|+.|+|..- =++|||++........ +.- .-....+.+.+.+...+-+.
T Consensus 604 KAHpdV~nilLQ-VlDdG-rL-TD~~Gr~VdFrNt-iIImTSN~Gs~~i~~~----~~~-~~~~~~~~~~~~v~~~l~~~ 674 (786)
T COG0542 604 KAHPDVFNLLLQ-VLDDG-RL-TDGQGRTVDFRNT-IIIMTSNAGSEEILRD----ADG-DDFADKEALKEAVMEELKKH 674 (786)
T ss_pred hcCHHHHHHHHH-HhcCC-ee-ecCCCCEEeccee-EEEEecccchHHHHhh----ccc-cccchhhhHHHHHHHHHHhh
Confidence 999998888864 44433 22 1222455665332 2677776643222111 100 22344677888999999999
Q ss_pred hCCcHHHHHHHHHHH
Q psy4724 1066 EKPDLETKKNELIIE 1080 (1650)
Q Consensus 1066 e~peLe~~~~~l~~~ 1080 (1650)
.+||+-.+-.+.+.-
T Consensus 675 F~PEFLNRid~II~F 689 (786)
T COG0542 675 FRPEFLNRIDEIIPF 689 (786)
T ss_pred CCHHHHhhcccEEec
Confidence 999998877654433
No 138
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=76.51 E-value=7.7 Score=42.18 Aligned_cols=29 Identities=10% Similarity=0.287 Sum_probs=22.1
Q ss_pred HHHhc-CCCCceEEEecCCchhhhHHHHHH
Q psy4724 68 CRILQ-QPKGHAMLITIGGSGAAEVTKLAT 96 (1650)
Q Consensus 68 ~Ril~-~p~G~alLvGvgGSGrqSLtrLAa 96 (1650)
.++.. ...-+.+++|.+||||.|+.+--.
T Consensus 6 ~~~~~~~~~~~ililGl~~sGKTtll~~l~ 35 (175)
T PF00025_consen 6 SKLKSKKKEIKILILGLDGSGKTTLLNRLK 35 (175)
T ss_dssp HHCTTTTSEEEEEEEESTTSSHHHHHHHHH
T ss_pred HHhcccCcEEEEEEECCCccchHHHHHHhh
Confidence 44444 456689999999999999987543
No 139
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=76.43 E-value=3.4 Score=47.87 Aligned_cols=70 Identities=21% Similarity=0.394 Sum_probs=43.7
Q ss_pred ccccCCHHHHHHHHHHHHHHHhccCCCCCcceeehHHHHHHHHHHHHH-----hcCCCCceEEEecCCchhhhHHH-HHH
Q psy4724 23 YDEIDNLDLLTEKINQYIVDYNTQNSNKPIDIVTFLYIIQHISRLCRI-----LQQPKGHAMLITIGGSGAAEVTK-LAT 96 (1650)
Q Consensus 23 Y~~~~~~~~l~~~l~~~l~~yN~~~~~~~m~lVlF~~ai~Hv~rI~Ri-----l~~p~G~alLvGvgGSGrqSLtr-LAa 96 (1650)
-.+++....++..|++|.=--.. .++ ||-=.+-.|.-||.-- +....+|.||||+.||||.=|++ ||.
T Consensus 46 ~~~lPtP~eik~~Ld~YVIGQe~--AKK----vLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk 119 (408)
T COG1219 46 LSELPTPKEIKAHLDEYVIGQEQ--AKK----VLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAK 119 (408)
T ss_pred hccCCChHHHHHHhhhheecchh--hhc----eeeeeehhHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHH
Confidence 34566766666555444322121 233 4444455799999643 45667999999999999988865 343
Q ss_pred Hh
Q psy4724 97 FM 98 (1650)
Q Consensus 97 fi 98 (1650)
.+
T Consensus 120 ~L 121 (408)
T COG1219 120 IL 121 (408)
T ss_pred Hh
Confidence 33
No 140
>KOG2138|consensus
Probab=76.34 E-value=1.7 Score=54.38 Aligned_cols=13 Identities=38% Similarity=0.383 Sum_probs=8.0
Q ss_pred CCcccccCchhHH
Q psy4724 930 NKWPLLIDPQGQA 942 (1650)
Q Consensus 930 ~r~PLlIDPq~qa 942 (1650)
.+-|+.=||--|.
T Consensus 454 n~kpF~dDpaKQ~ 466 (883)
T KOG2138|consen 454 NFKPFADDPAKQK 466 (883)
T ss_pred ccCCCccCHHHHH
Confidence 4556666776655
No 141
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=76.11 E-value=59 Score=43.15 Aligned_cols=92 Identities=14% Similarity=0.195 Sum_probs=64.7
Q ss_pred CCeEEEecccccccccchHHHhHHHHhhcCeEEEEecCeeeeecCCeeEEEEeCCCCCCCCcccccceEEEEeeeChhhH
Q psy4724 975 GTAVLLENIQETIDSSLEPVLLKSYYKIQNQLIMTLNNKEIEYNIKFRLYITTRLKNPHYIPEILTKITLINFMITPQGL 1054 (1650)
Q Consensus 975 G~~vlie~v~e~~dp~l~p~L~~~~~~~~~~~~i~ig~~~i~~~~~FrL~l~Tk~~np~~~pe~~~~~tvinf~vt~~gL 1054 (1650)
++.+||+++ +.+++.-...|.|.+. ++.++.+++|+|+.++ .+++-|.+||..++|.--...-
T Consensus 120 ~KVIIIDEa-h~LT~~A~NALLKtLE---------------EPP~~v~FILaTtd~~-KIp~TIrSRCq~f~Fk~Ls~ee 182 (830)
T PRK07003 120 FKVYMIDEV-HMLTNHAFNAMLKTLE---------------EPPPHVKFILATTDPQ-KIPVTVLSRCLQFNLKQMPAGH 182 (830)
T ss_pred ceEEEEeCh-hhCCHHHHHHHHHHHH---------------hcCCCeEEEEEECChh-hccchhhhheEEEecCCcCHHH
Confidence 467888888 6777655555555432 2456788899997643 6778899999999999544444
Q ss_pred HHHHHHHHHHhhCCcHHHHHHHHHHHHHH
Q psy4724 1055 QNQLLGIVVAKEKPDLETKKNELIIESAN 1083 (1650)
Q Consensus 1055 e~qlL~~vv~~e~peLe~~~~~l~~~~~~ 1083 (1650)
-.+.|..++..|.-+++.+-..++...++
T Consensus 183 Iv~~L~~Il~~EgI~id~eAL~lIA~~A~ 211 (830)
T PRK07003 183 IVSHLERILGEERIAFEPQALRLLARAAQ 211 (830)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 44555667788888888887777776654
No 142
>PRK10865 protein disaggregation chaperone; Provisional
Probab=75.83 E-value=9.1 Score=52.39 Aligned_cols=107 Identities=14% Similarity=0.214 Sum_probs=60.3
Q ss_pred eeehHHHHHHHHHHHHHhc-------CCCCceEEEecCCchhhhHHHHHH-Hhc--CCceEEEEEcccCCcchhHHHH--
Q psy4724 54 IVTFLYIIQHISRLCRILQ-------QPKGHAMLITIGGSGAAEVTKLAT-FMN--EYVLFEIEILKTYGLTDWRDDL-- 121 (1650)
Q Consensus 54 lVlF~~ai~Hv~rI~Ril~-------~p~G~alLvGvgGSGrqSLtrLAa-fi~--~~~~fqIeitk~Yg~~~f~eDL-- 121 (1650)
++=-+.||++|++--+-.+ .|.|+.||+|+.|+||.+|+|.-+ ++. +..++.+.++ .|........|
T Consensus 570 viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~s-e~~~~~~~~~LiG 648 (857)
T PRK10865 570 VIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMS-EFMEKHSVSRLVG 648 (857)
T ss_pred EeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhH-HhhhhhhHHHHhC
Confidence 5666889999888776543 345899999999999999988655 332 3334444332 22211111001
Q ss_pred ----------HHHHHHhccCCCCCEEEEEecCCcCchhhHHHHHHHHhhhh
Q psy4724 122 ----------CRLMKKSGGKDAKPMTFLFSDTQIQNEVFVEHINMLLNTAR 162 (1650)
Q Consensus 122 ----------k~l~~~~g~~~~k~~vFl~tD~qI~~E~fLedIN~lL~tge 162 (1650)
...+..+. ......|++|.|-+-.+......+=.+|..|.
T Consensus 649 ~~pgy~g~~~~g~l~~~v-~~~p~~vLllDEieka~~~v~~~Ll~ile~g~ 698 (857)
T PRK10865 649 APPGYVGYEEGGYLTEAV-RRRPYSVILLDEVEKAHPDVFNILLQVLDDGR 698 (857)
T ss_pred CCCcccccchhHHHHHHH-HhCCCCeEEEeehhhCCHHHHHHHHHHHhhCc
Confidence 01111111 11223688888877666555554544555553
No 143
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=75.82 E-value=13 Score=43.29 Aligned_cols=90 Identities=16% Similarity=0.236 Sum_probs=57.8
Q ss_pred HHHHHHHcCCeEEEecccccccccchHHHhHHHHhhcCeEEEEe---cCeeeeecCCeeEEEEeCCCCC----CCCcccc
Q psy4724 967 TLERAIRTGTAVLLENIQETIDSSLEPVLLKSYYKIQNQLIMTL---NNKEIEYNIKFRLYITTRLKNP----HYIPEIL 1039 (1650)
Q Consensus 967 ~le~ai~~G~~vlie~v~e~~dp~l~p~L~~~~~~~~~~~~i~i---g~~~i~~~~~FrL~l~Tk~~np----~~~pe~~ 1039 (1650)
.|..|++.|..|+|.++ +.++|.....|..-+ .. +...+.= .+..+..+|+||++.|+.-... ..++.+.
T Consensus 98 ~l~~A~~~g~~lllDEi-~r~~~~~q~~Ll~~L-e~-~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~~l~~aL~ 174 (262)
T TIGR02640 98 RLTLAVREGFTLVYDEF-TRSKPETNNVLLSVF-EE-GVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVHETQDALL 174 (262)
T ss_pred hHHHHHHcCCEEEEcch-hhCCHHHHHHHHHHh-cC-CeEEccCCCCCCceEecCCCCEEEEeeCCccccceecccHHHH
Confidence 46778899999999999 678988877776533 22 3222211 1356789999999998853311 2255667
Q ss_pred cceEEEEeeeChhhHHHHHH
Q psy4724 1040 TKITLINFMITPQGLQNQLL 1059 (1650)
Q Consensus 1040 ~~~tvinf~vt~~gLe~qlL 1059 (1650)
.|+..+.+..-...-|.+++
T Consensus 175 ~R~~~i~i~~P~~~~e~~Il 194 (262)
T TIGR02640 175 DRLITIFMDYPDIDTETAIL 194 (262)
T ss_pred hhcEEEECCCCCHHHHHHHH
Confidence 77776666654443343333
No 144
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=75.69 E-value=64 Score=37.37 Aligned_cols=35 Identities=9% Similarity=0.251 Sum_probs=27.3
Q ss_pred HHhcCCCCHHHHHHHHHHHHHhhhhcCCCCCCCCc
Q psy4724 860 ITYLGAFTVDFRNDLIEQWKSLSSQEQMPFTLSFS 894 (1650)
Q Consensus 860 i~Y~G~f~~~~R~~l~~~w~~~~~~~~i~~~~~~~ 894 (1650)
|.=-=||..+.|..-+......+....++.++.|.
T Consensus 118 v~~d~Pf~~~eR~~Rl~~L~~~l~~~dv~~~ek~r 152 (251)
T PF11932_consen 118 VELDLPFLLEERQERLARLRAMLDDADVSLAEKFR 152 (251)
T ss_pred HhcCCCCChHHHHHHHHHHHHhhhccCCCHHHHHH
Confidence 33334999999999999999998888888776544
No 145
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=75.62 E-value=6.1 Score=47.36 Aligned_cols=49 Identities=12% Similarity=0.154 Sum_probs=40.0
Q ss_pred hHHHHHHHHHHHHHhcCCCCceEEEecCCchhhhHHHHHHHhcCCceEEE
Q psy4724 57 FLYIIQHISRLCRILQQPKGHAMLITIGGSGAAEVTKLATFMNEYVLFEI 106 (1650)
Q Consensus 57 F~~ai~Hv~rI~Ril~~p~G~alLvGvgGSGrqSLtrLAafi~~~~~fqI 106 (1650)
-.+.++++.+-.|-+.+ ..+..|+|..||||.++.+..+--.|+.++.+
T Consensus 116 ~~~~l~~~~~~~~~~~~-~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~ 164 (309)
T PRK08154 116 VRDALSGMLGAGRRAAR-RRRIALIGLRGAGKSTLGRMLAARLGVPFVEL 164 (309)
T ss_pred HHHHHHHHHhhhhhccC-CCEEEEECCCCCCHHHHHHHHHHHcCCCEEeH
Confidence 36788888888888776 45899999999999999999776667766644
No 146
>PRK07952 DNA replication protein DnaC; Validated
Probab=75.49 E-value=15 Score=42.22 Aligned_cols=94 Identities=10% Similarity=0.115 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHhcCCCCceEEEecCCchhhhHHHHHH-Hhc--CCceEEEEEcccCCcchhHHHHHHHHHHhcc------
Q psy4724 60 IIQHISRLCRILQQPKGHAMLITIGGSGAAEVTKLAT-FMN--EYVLFEIEILKTYGLTDWRDDLCRLMKKSGG------ 130 (1650)
Q Consensus 60 ai~Hv~rI~Ril~~p~G~alLvGvgGSGrqSLtrLAa-fi~--~~~~fqIeitk~Yg~~~f~eDLk~l~~~~g~------ 130 (1650)
|+.++.+++.-.....++.+|.|.+|+||..|+.-.+ ++. |+.+.-| ...+|.+.++..+..+..
T Consensus 84 al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~i------t~~~l~~~l~~~~~~~~~~~~~~l 157 (244)
T PRK07952 84 ALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLII------TVADIMSAMKDTFSNSETSEEQLL 157 (244)
T ss_pred HHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEE------EHHHHHHHHHHHHhhccccHHHHH
Confidence 6667777766544334689999999999999977544 443 5555555 356666666544422110
Q ss_pred --CCCCCEEEEEecCCcCchh-h-HHHHHHHHhh
Q psy4724 131 --KDAKPMTFLFSDTQIQNEV-F-VEHINMLLNT 160 (1650)
Q Consensus 131 --~~~k~~vFl~tD~qI~~E~-f-LedIN~lL~t 160 (1650)
.. +.-++++.|-.....+ + .+.++.+++.
T Consensus 158 ~~l~-~~dlLvIDDig~~~~s~~~~~~l~~Ii~~ 190 (244)
T PRK07952 158 NDLS-NVDLLVIDEIGVQTESRYEKVIINQIVDR 190 (244)
T ss_pred HHhc-cCCEEEEeCCCCCCCCHHHHHHHHHHHHH
Confidence 11 2345667776554322 2 2345667665
No 147
>PRK13531 regulatory ATPase RavA; Provisional
Probab=75.38 E-value=3 Score=52.03 Aligned_cols=57 Identities=18% Similarity=0.239 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHhccCCCCCcceeehHHHHHHHHHHHHHhcCCCCceEEEecCCchhhhHHHHHHHhc
Q psy4724 32 LTEKINQYIVDYNTQNSNKPIDIVTFLYIIQHISRLCRILQQPKGHAMLITIGGSGAAEVTKLATFMN 99 (1650)
Q Consensus 32 l~~~l~~~l~~yN~~~~~~~m~lVlF~~ai~Hv~rI~Ril~~p~G~alLvGvgGSGrqSLtrLAafi~ 99 (1650)
+...+....++.|..-.++ +++| |..-+.-..+||+||.|+.|+||.+|+|.-+...
T Consensus 7 ~~~~i~~l~~~l~~~i~gr-------e~vI----~lll~aalag~hVLL~GpPGTGKT~LAraLa~~~ 63 (498)
T PRK13531 7 LAERISRLSSALEKGLYER-------SHAI----RLCLLAALSGESVFLLGPPGIAKSLIARRLKFAF 63 (498)
T ss_pred HHHHHHHHHHHHhhhccCc-------HHHH----HHHHHHHccCCCEEEECCCChhHHHHHHHHHHHh
Confidence 4455555555555422222 4444 4444445679999999999999999997666543
No 148
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=74.85 E-value=31 Score=49.73 Aligned_cols=30 Identities=13% Similarity=0.221 Sum_probs=24.5
Q ss_pred cCCCCceEEEecCCchhhhHHHHHHHhcCC
Q psy4724 72 QQPKGHAMLITIGGSGAAEVTKLATFMNEY 101 (1650)
Q Consensus 72 ~~p~G~alLvGvgGSGrqSLtrLAafi~~~ 101 (1650)
....|--++||+.||||.||-.-=.|+.|.
T Consensus 20 ~f~~~~~~i~G~NGsGKS~ll~ai~~~lg~ 49 (1179)
T TIGR02168 20 NFDKGITGIVGPNGCGKSNIVDAIRWVLGE 49 (1179)
T ss_pred EecCCcEEEECCCCCChhHHHHHHHHHHcC
Confidence 444678889999999999999777777764
No 149
>KOG1962|consensus
Probab=74.75 E-value=13 Score=41.12 Aligned_cols=62 Identities=16% Similarity=0.218 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4724 758 KKAKLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKLE 819 (1650)
Q Consensus 758 ~~~~l~~~e~~l~~~~~~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ 819 (1650)
+.++.+...+++...+++++.+..+|...+++..+|+++.+....|.++|-++.+..+.+++
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~ 210 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIE 210 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Confidence 34555666666667777777777777777777777777777777777777766666665554
No 150
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=74.69 E-value=39 Score=32.84 Aligned_cols=70 Identities=20% Similarity=0.181 Sum_probs=58.5
Q ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4724 746 EVYDRVIKIVGPKKAKLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCK 815 (1650)
Q Consensus 746 ~~Y~~v~~~v~P~~~~l~~~e~~l~~~~~~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~ 815 (1650)
..|.++.-...-++..+-+-++........|..+.+.|..++..++.|.-.-+..+.+.+.|+.+++...
T Consensus 5 ~eYsKLraQ~~vLKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~~~~ 74 (102)
T PF10205_consen 5 QEYSKLRAQNQVLKKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELEESE 74 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4688888787888888888888888888889888888888888888888888888888888888887543
No 151
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=74.62 E-value=46 Score=30.60 Aligned_cols=66 Identities=14% Similarity=0.240 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhccHHHHHHHHHHHHhhchh
Q psy4724 779 KRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKLERAEKLIGGLGGEKTRWSEASANLSKALVNCIG 851 (1650)
Q Consensus 779 ~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~~Li~~L~~E~~rW~~~~~~~~~~~~~l~G 851 (1650)
.+++++..-+.|.-|+.+.++...+...|..+++.+. .=-..|..|...=+..-...+.++..|+|
T Consensus 9 LE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~-------~~r~~L~~en~qLk~E~~~WqerLr~LLG 74 (79)
T PRK15422 9 LEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQ-------HQREELERENNHLKEQQNGWQERLQALLG 74 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444333221 11233455555555555555555555555
No 152
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=74.38 E-value=45 Score=38.54 Aligned_cols=102 Identities=22% Similarity=0.281 Sum_probs=71.9
Q ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy4724 748 YDRVIKIVGPKKAKLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKLERAEKLIGG 827 (1650)
Q Consensus 748 Y~~v~~~v~P~~~~l~~~e~~l~~~~~~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~~Li~~ 827 (1650)
|.-.-+++..+..+-..+...++....+ ...+..++.+..+++.++.+++....+...|+..++.-..-|+|+++-+.+
T Consensus 137 ydlL~kE~~lr~~R~~a~~r~~e~~~iE-~~l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~s 215 (267)
T PF10234_consen 137 YDLLGKEVELREERQRALARPLELNEIE-KALKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQS 215 (267)
T ss_pred HHHHhchHhHHHHHHHHHcCCcCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555544444444444333322211 223455677788888888888888888888888888888888899998899
Q ss_pred hchhhccHHHHHHHHHHHHhhch
Q psy4724 828 LGGEKTRWSEASANLSKALVNCI 850 (1650)
Q Consensus 828 L~~E~~rW~~~~~~~~~~~~~l~ 850 (1650)
|..=++-..+..+.++.++..+-
T Consensus 216 Lq~vRPAfmdEyEklE~EL~~lY 238 (267)
T PF10234_consen 216 LQSVRPAFMDEYEKLEEELQKLY 238 (267)
T ss_pred HHhcChHHHHHHHHHHHHHHHHH
Confidence 98888888888888888887764
No 153
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=74.36 E-value=12 Score=48.69 Aligned_cols=104 Identities=14% Similarity=0.268 Sum_probs=62.5
Q ss_pred ceeehHHHHHHHHHHHHHhcCCCCceEEEecCCchhhhHHHHHHHhcCC-----------------------------ce
Q psy4724 53 DIVTFLYIIQHISRLCRILQQPKGHAMLITIGGSGAAEVTKLATFMNEY-----------------------------VL 103 (1650)
Q Consensus 53 ~lVlF~~ai~Hv~rI~Ril~~p~G~alLvGvgGSGrqSLtrLAafi~~~-----------------------------~~ 103 (1650)
+||--+.++.++.+..+-=+. .-+.||.|+.|+||.|++|+-|---.| ++
T Consensus 25 dliGq~~~v~~L~~~~~~gri-~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~~C~~i~~g~h~Dv 103 (598)
T PRK09111 25 DLIGQEAMVRTLTNAFETGRI-AQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGEHCQAIMEGRHVDV 103 (598)
T ss_pred HhcCcHHHHHHHHHHHHcCCC-CceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccHHHHHHhcCCCCce
Confidence 566667777776664432111 224788999999999999876543222 34
Q ss_pred EEEEEcccCCcchhHHHHHHHHHHhccCCCCCEEEEEecCCcCchhhHHHHHHHHhhhh
Q psy4724 104 FEIEILKTYGLTDWRDDLCRLMKKSGGKDAKPMTFLFSDTQIQNEVFVEHINMLLNTAR 162 (1650)
Q Consensus 104 fqIeitk~Yg~~~f~eDLk~l~~~~g~~~~k~~vFl~tD~qI~~E~fLedIN~lL~tge 162 (1650)
+++......|+.+.|+ |-....... ..+..-|+++.+.+-.+. +..|.||.+=|
T Consensus 104 ~e~~a~s~~gvd~IRe-Iie~~~~~P-~~a~~KVvIIDEad~Ls~---~a~naLLKtLE 157 (598)
T PRK09111 104 LEMDAASHTGVDDIRE-IIESVRYRP-VSARYKVYIIDEVHMLST---AAFNALLKTLE 157 (598)
T ss_pred EEecccccCCHHHHHH-HHHHHHhch-hcCCcEEEEEEChHhCCH---HHHHHHHHHHH
Confidence 4555555566665554 222233333 345667788888765543 45788887643
No 154
>PRK00625 shikimate kinase; Provisional
Probab=74.31 E-value=6.6 Score=42.68 Aligned_cols=31 Identities=13% Similarity=0.193 Sum_probs=25.7
Q ss_pred ceEEEecCCchhhhHHHHHHHhcCCceEEEE
Q psy4724 77 HAMLITIGGSGAAEVTKLATFMNEYVLFEIE 107 (1650)
Q Consensus 77 ~alLvGvgGSGrqSLtrLAafi~~~~~fqIe 107 (1650)
|.+|||+.||||.|++|..|--.++.++.+.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D 32 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTD 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhh
Confidence 6899999999999999988776677765553
No 155
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=74.06 E-value=12 Score=46.86 Aligned_cols=63 Identities=13% Similarity=0.116 Sum_probs=39.6
Q ss_pred CCceEEEecCCchhhhHHHHHHHhcCCceEEEEEc---ccCCcchhHHHHHHHHHHhccCCCCCEEEEE
Q psy4724 75 KGHAMLITIGGSGAAEVTKLATFMNEYVLFEIEIL---KTYGLTDWRDDLCRLMKKSGGKDAKPMTFLF 140 (1650)
Q Consensus 75 ~G~alLvGvgGSGrqSLtrLAafi~~~~~fqIeit---k~Yg~~~f~eDLk~l~~~~g~~~~k~~vFl~ 140 (1650)
.-++||.|+.|+||.+|+|..|...+..++.+.-+ ..|.- +-..-++.++..|. .+.|++.+|
T Consensus 217 p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~k~~G-e~~~~vr~lF~~A~--~~~P~ILfI 282 (438)
T PTZ00361 217 PKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQKYLG-DGPKLVRELFRVAE--ENAPSIVFI 282 (438)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhhhhcc-hHHHHHHHHHHHHH--hCCCcEEeH
Confidence 34588999999999999999998888777666422 11211 11122555566554 355655443
No 156
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=73.94 E-value=6 Score=48.54 Aligned_cols=35 Identities=14% Similarity=0.268 Sum_probs=30.9
Q ss_pred CCceEEEecCCchhhhHHHHHHHhcCCceEEEEEc
Q psy4724 75 KGHAMLITIGGSGAAEVTKLATFMNEYVLFEIEIL 109 (1650)
Q Consensus 75 ~G~alLvGvgGSGrqSLtrLAafi~~~~~fqIeit 109 (1650)
.+|.||+|+.|+||.+|+|.-|-..+..++.+..+
T Consensus 47 p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat 81 (441)
T TIGR00390 47 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEAT 81 (441)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecc
Confidence 48999999999999999998888888888888754
No 157
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=73.60 E-value=53 Score=39.67 Aligned_cols=97 Identities=18% Similarity=0.235 Sum_probs=50.9
Q ss_pred HHHHHHHhcchHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4724 747 VYDRVIKIVGPKKAKLAEAE----ADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKLERAE 822 (1650)
Q Consensus 747 ~Y~~v~~~v~P~~~~l~~~e----~~l~~~~~~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~ 822 (1650)
.|..+..++.-++....+.+ .++..++++|.....++......+++++.+++....+.+.+..+...+...+..|+
T Consensus 185 ~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~ 264 (325)
T PF08317_consen 185 RKAELEEELENLKQLVEEIESCDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAE 264 (325)
T ss_pred HHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555554444444333 34455555555555555555555555555555555555555555555555555555
Q ss_pred HHHhhhchhhccHH-HHHHHHHHHHh
Q psy4724 823 KLIGGLGGEKTRWS-EASANLSKALV 847 (1650)
Q Consensus 823 ~Li~~L~~E~~rW~-~~~~~~~~~~~ 847 (1650)
+.... ...|+ ..+..++....
T Consensus 265 ~~~~~----~r~~t~~Ev~~Lk~~~~ 286 (325)
T PF08317_consen 265 KIREE----CRGWTRSEVKRLKAKVD 286 (325)
T ss_pred HHHHH----hcCCCHHHHHHHHHHHH
Confidence 55542 34564 33455555443
No 158
>PRK09039 hypothetical protein; Validated
Probab=73.54 E-value=37 Score=41.24 Aligned_cols=62 Identities=21% Similarity=0.240 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4724 760 AKLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKLERA 821 (1650)
Q Consensus 760 ~~l~~~e~~l~~~~~~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra 821 (1650)
.+|.+......++..++...+++++.++++++.++..++.+.++....+.+++..+.+|+.|
T Consensus 123 ~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a 184 (343)
T PRK09039 123 QELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVA 184 (343)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444455555555555555555555555555555555555555555444
No 159
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=73.54 E-value=13 Score=46.38 Aligned_cols=89 Identities=12% Similarity=0.204 Sum_probs=49.5
Q ss_pred HHHHhcCCC-Cc-eEEEecCCchhhhHHHHHHHhcCC--------------------------------ceEEEEEcccC
Q psy4724 67 LCRILQQPK-GH-AMLITIGGSGAAEVTKLATFMNEY--------------------------------VLFEIEILKTY 112 (1650)
Q Consensus 67 I~Ril~~p~-G~-alLvGvgGSGrqSLtrLAafi~~~--------------------------------~~fqIeitk~Y 112 (1650)
+.+.++..+ .| .|+.|+.|+||.|+++.-|-.-.| ++..++-....
T Consensus 28 L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~~~~~~~n~~~~~~~~~~ 107 (397)
T PRK14955 28 IQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDFDAGTSLNISEFDAASNN 107 (397)
T ss_pred HHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHHhcCCCCCeEeecccccC
Confidence 344555433 57 557899999999999876543332 23333332334
Q ss_pred CcchhHHHHHHHHHHhccCCCCCEEEEEecCCcCchhhHHHHHHHHhh
Q psy4724 113 GLTDWRDDLCRLMKKSGGKDAKPMTFLFSDTQIQNEVFVEHINMLLNT 160 (1650)
Q Consensus 113 g~~~f~eDLk~l~~~~g~~~~k~~vFl~tD~qI~~E~fLedIN~lL~t 160 (1650)
+..+.++-+ .-+.... ..+...|+++.|.+-... +..|.+|.+
T Consensus 108 ~id~Ir~l~-~~~~~~p-~~~~~kvvIIdea~~l~~---~~~~~LLk~ 150 (397)
T PRK14955 108 SVDDIRLLR-ENVRYGP-QKGRYRVYIIDEVHMLSI---AAFNAFLKT 150 (397)
T ss_pred CHHHHHHHH-HHHhhch-hcCCeEEEEEeChhhCCH---HHHHHHHHH
Confidence 444444322 2222224 345667888888765443 345666655
No 160
>KOG0733|consensus
Probab=73.36 E-value=7.7 Score=48.78 Aligned_cols=68 Identities=15% Similarity=0.307 Sum_probs=52.1
Q ss_pred hcCCCCceEEEecCCchhhhHHHHHHHhcCCceEEEE---EcccC-CcchhHHHHHHHHHHhccCCCCCEEEEEecC
Q psy4724 71 LQQPKGHAMLITIGGSGAAEVTKLATFMNEYVLFEIE---ILKTY-GLTDWRDDLCRLMKKSGGKDAKPMTFLFSDT 143 (1650)
Q Consensus 71 l~~p~G~alLvGvgGSGrqSLtrLAafi~~~~~fqIe---itk~Y-g~~~f~eDLk~l~~~~g~~~~k~~vFl~tD~ 143 (1650)
++-||| .||-|+.|+||.+|++--|-=.|.-+++|. +-.+| |.++ +-|+.++..|- .+-|++.+|.|=
T Consensus 220 v~PprG-vLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGvSGESE--kkiRelF~~A~--~~aPcivFiDeI 291 (802)
T KOG0733|consen 220 VRPPRG-VLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGVSGESE--KKIRELFDQAK--SNAPCIVFIDEI 291 (802)
T ss_pred CCCCCc-eeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcccCcccH--HHHHHHHHHHh--ccCCeEEEeecc
Confidence 355677 679999999999999987777788888884 33444 4554 67888899875 688988888773
No 161
>CHL00095 clpC Clp protease ATP binding subunit
Probab=73.28 E-value=11 Score=51.53 Aligned_cols=107 Identities=16% Similarity=0.222 Sum_probs=59.9
Q ss_pred eeehHHHHHHHHHHHHHh-------cCCCCceEEEecCCchhhhHHHH-HHHhc--CCceEEEEEcccCCcchhHHHH--
Q psy4724 54 IVTFLYIIQHISRLCRIL-------QQPKGHAMLITIGGSGAAEVTKL-ATFMN--EYVLFEIEILKTYGLTDWRDDL-- 121 (1650)
Q Consensus 54 lVlF~~ai~Hv~rI~Ril-------~~p~G~alLvGvgGSGrqSLtrL-Aafi~--~~~~fqIeitk~Yg~~~f~eDL-- 121 (1650)
++==++|++.|++.-+.- +.|.|+.||+|+.|+||.+|++. |.++. +..+..+.++. |....-...|
T Consensus 511 v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~-~~~~~~~~~l~g 589 (821)
T CHL00095 511 IIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSE-YMEKHTVSKLIG 589 (821)
T ss_pred CcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchh-ccccccHHHhcC
Confidence 444588888887754432 34678999999999999999875 44553 34566665542 2211100000
Q ss_pred ----------HHHHHHhccCCCCCEEEEEecCCcCchhhHHHHHHHHhhhh
Q psy4724 122 ----------CRLMKKSGGKDAKPMTFLFSDTQIQNEVFVEHINMLLNTAR 162 (1650)
Q Consensus 122 ----------k~l~~~~g~~~~k~~vFl~tD~qI~~E~fLedIN~lL~tge 162 (1650)
...+..+- ..+...|++|.|-+=.+..+..-+-.+|..|.
T Consensus 590 ~~~gyvg~~~~~~l~~~~-~~~p~~VvllDeieka~~~v~~~Llq~le~g~ 639 (821)
T CHL00095 590 SPPGYVGYNEGGQLTEAV-RKKPYTVVLFDEIEKAHPDIFNLLLQILDDGR 639 (821)
T ss_pred CCCcccCcCccchHHHHH-HhCCCeEEEECChhhCCHHHHHHHHHHhccCc
Confidence 00111111 11223688888877555555544444555554
No 162
>PLN02199 shikimate kinase
Probab=73.17 E-value=8.9 Score=44.93 Aligned_cols=89 Identities=19% Similarity=0.219 Sum_probs=62.5
Q ss_pred ehHHHHHHHHHHHHHhcC--CCCceEEEecCCchhhhHHHHHHHhcCCceEEEE--------------EcccCCcchhHH
Q psy4724 56 TFLYIIQHISRLCRILQQ--PKGHAMLITIGGSGAAEVTKLATFMNEYVLFEIE--------------ILKTYGLTDWRD 119 (1650)
Q Consensus 56 lF~~ai~Hv~rI~Ril~~--p~G~alLvGvgGSGrqSLtrLAafi~~~~~fqIe--------------itk~Yg~~~f~e 119 (1650)
-|++.+ +-+.++-++. ++-+..|||..||||.++.|+.|-..||.++-.. +-..||...||+
T Consensus 83 ~~de~~--Lk~~a~~i~~~l~~~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD~lIe~~~~G~sI~eIf~~~GE~~FR~ 160 (303)
T PLN02199 83 PFDEDI--LKRKAEEVKPYLNGRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCDTLIEQAMNGTSVAEIFVHHGENFFRG 160 (303)
T ss_pred CCCHHH--HHHHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHHhCCCEEehHHHHHHHhcCCCHHHHHHHhCHHHHHH
Confidence 677774 7788877755 4558999999999999999999977788766443 112488888888
Q ss_pred HHHHHHHHhccCCCCCEEEEEecCCcCch
Q psy4724 120 DLCRLMKKSGGKDAKPMTFLFSDTQIQNE 148 (1650)
Q Consensus 120 DLk~l~~~~g~~~~k~~vFl~tD~qI~~E 148 (1650)
--..++.... ...++|+=.+-.-+..+
T Consensus 161 ~E~e~L~~L~--~~~~~VIStGGG~V~~~ 187 (303)
T PLN02199 161 KETDALKKLS--SRYQVVVSTGGGAVIRP 187 (303)
T ss_pred HHHHHHHHHH--hcCCEEEECCCcccCCH
Confidence 7777777765 23355554444444433
No 163
>PHA02244 ATPase-like protein
Probab=72.87 E-value=4.5 Score=48.78 Aligned_cols=42 Identities=12% Similarity=0.191 Sum_probs=35.0
Q ss_pred HHHHHHhcCCCCceEEEecCCchhhhHHHHHHHhcCCceEEEE
Q psy4724 65 SRLCRILQQPKGHAMLITIGGSGAAEVTKLATFMNEYVLFEIE 107 (1650)
Q Consensus 65 ~rI~Ril~~p~G~alLvGvgGSGrqSLtrLAafi~~~~~fqIe 107 (1650)
.||.|++.. +-++||+|..|+||.+|++-.+...+..++.+.
T Consensus 110 ~ri~r~l~~-~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In 151 (383)
T PHA02244 110 ADIAKIVNA-NIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMN 151 (383)
T ss_pred HHHHHHHhc-CCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEe
Confidence 367777766 458999999999999999998888888877774
No 164
>PF12781 AAA_9: ATP-binding dynein motor region D5; PDB: 3VKG_A 3VKH_C 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=72.87 E-value=0.096 Score=59.36 Aligned_cols=108 Identities=17% Similarity=0.184 Sum_probs=67.0
Q ss_pred HHHHHhccCCCCCEEEEEecCCcCchhhHHHHHHHHhhhh--hccccccccccCCCC---CccchhhhhhhhcCcchHHh
Q psy4724 123 RLMKKSGGKDAKPMTFLFSDTQIQNEVFVEHINMLLNTAR--KRYNMDLTKSYGVCP---SMSIVHHLEDLNASPLVYDE 197 (1650)
Q Consensus 123 ~l~~~~g~~~~k~~vFl~tD~qI~~E~fLedIN~lL~tge--~~~~~~vp~l~~~v~---~l~~~~~Le~~~~~~~v~~E 197 (1650)
.++.+... ++++ +.-++|..| .|..++..+|.|.. ||| .|.+++++. +..+.+||++|+++.++..|
T Consensus 96 plL~k~~~-~~g~-~i~igd~~v---~~~~~FrL~L~T~~~~p~~---~pe~~s~vtviNFtvt~~gLe~qll~~vv~~e 167 (228)
T PF12781_consen 96 PLLRKNII-KSGK-FIKIGDKEV---DYNPNFRLYLTTKLPNPHY---PPEVSSKVTVINFTVTQEGLEDQLLSIVVKHE 167 (228)
T ss_dssp HHHTTT-E-E-SS-EEESSSSEE---E--SS-EEEEEESSTTSHH---HHHHHHCSEEEE----CHHHHHHHHHHHHHHH
T ss_pred hhhcchhc-cCCc-eEEecCeEE---EeeccceEEEeecCCCCCC---ChhhhceeeEEEEEecHHHHHHHHHHHHHHHH
Confidence 55555542 2223 456788777 47777778888875 888 777777744 44578999999999999999
Q ss_pred hhchhHHHHHHHHHHHhhhhccCCCCccchhHhHHHHHHHHHHHHhcCCccchh
Q psy4724 198 IDNLDLLTEKINQYIVDYNTQNSNKPIDIVTFLYIIQHISRLCRILQQPKGHAM 251 (1650)
Q Consensus 198 ~~~~~~l~e~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~l~~~~~~~~ 251 (1650)
. |+++++...+....+..+. .+ -.--++++..|....|+..
T Consensus 168 ~---PeLe~~r~~L~~~~~~~k~--~L--------~~lEd~lL~~Ls~s~g~iL 208 (228)
T PF12781_consen 168 R---PELEEQRNELLKEIAENKI--QL--------KELEDQLLELLSNSEGNIL 208 (228)
T ss_dssp C---HHHHHHHHHHHHHHHHCCH--HH--------HHHHHHHHHHCCCTSSCCC
T ss_pred h---HHHHHHHHHHHHHHHHHHH--HH--------HHHHHHHHHHHHhCCCCcc
Confidence 9 9999988777744322221 01 0111466777777777654
No 165
>PRK09039 hypothetical protein; Validated
Probab=72.82 E-value=46 Score=40.43 Aligned_cols=72 Identities=14% Similarity=0.144 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhccHHHHHHHHHHHHhhc
Q psy4724 778 SKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKLERAEKLIGGLGGEKTRWSEASANLSKALVNC 849 (1650)
Q Consensus 778 ~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~~Li~~L~~E~~rW~~~~~~~~~~~~~l 849 (1650)
..+..+..+.++|...+..|.+...+...|..+++..+..+.+.+..|..+.....-=+..++.++..+...
T Consensus 113 ~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a 184 (343)
T PRK09039 113 AAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVA 184 (343)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666777777777777777777777777777777777777777777666555555555555555444
No 166
>CHL00206 ycf2 Ycf2; Provisional
Probab=72.75 E-value=5.8 Score=56.49 Aligned_cols=38 Identities=16% Similarity=0.204 Sum_probs=32.7
Q ss_pred cCCCCceEEEecCCchhhhHHHHHHHhcCCceEEEEEcc
Q psy4724 72 QQPKGHAMLITIGGSGAAEVTKLATFMNEYVLFEIEILK 110 (1650)
Q Consensus 72 ~~p~G~alLvGvgGSGrqSLtrLAafi~~~~~fqIeitk 110 (1650)
+.|+| +||+|+.|+||..|+|-.|--++..++.|..+.
T Consensus 1628 ~pPKG-ILLiGPPGTGKTlLAKALA~es~VPFIsISgs~ 1665 (2281)
T CHL00206 1628 SPSRG-ILVIGSIGTGRSYLVKYLATNSYVPFITVFLNK 1665 (2281)
T ss_pred CCCCc-eEEECCCCCCHHHHHHHHHHhcCCceEEEEHHH
Confidence 44555 789999999999999999999999999997664
No 167
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=72.72 E-value=3.7 Score=49.96 Aligned_cols=43 Identities=21% Similarity=0.377 Sum_probs=31.8
Q ss_pred HHHHhcCCCCceEEEecCCchhhhHHH-HHHHhcC---CceEEEEEc
Q psy4724 67 LCRILQQPKGHAMLITIGGSGAAEVTK-LATFMNE---YVLFEIEIL 109 (1650)
Q Consensus 67 I~Ril~~p~G~alLvGvgGSGrqSLtr-LAafi~~---~~~fqIeit 109 (1650)
+.+++..|+|+.|+.|..||||.|+.+ |+.++.. ..++.+|-.
T Consensus 114 l~~~~~~~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp 160 (343)
T TIGR01420 114 LRELAERPRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDP 160 (343)
T ss_pred HHHHHhhcCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCC
Confidence 445667889999999999999999986 5566652 345665443
No 168
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=72.59 E-value=35 Score=31.35 Aligned_cols=69 Identities=19% Similarity=0.258 Sum_probs=34.0
Q ss_pred HHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4724 752 IKIVGPKKAKLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKLER 820 (1650)
Q Consensus 752 ~~~v~P~~~~l~~~e~~l~~~~~~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~r 820 (1650)
.+.++.|-+.++++..+-......-......+..+..++..+..+......+.+.++.+++..+.++.+
T Consensus 4 ~~~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l~~ 72 (74)
T PF12329_consen 4 EKKLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERLKR 72 (74)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344455555555555444444433333444444555555555555555555555555555555555543
No 169
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=72.38 E-value=29 Score=36.45 Aligned_cols=53 Identities=17% Similarity=0.215 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4724 774 EKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKLERAEKLIG 826 (1650)
Q Consensus 774 ~~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~~Li~ 826 (1650)
.+....+.++.++..++..|+.++....++...++++++.+-.=++||.+++.
T Consensus 104 ~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~RARkl~~ 156 (161)
T TIGR02894 104 KENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMDRARKLAV 156 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445556666777777778888888888888888888888888999998874
No 170
>KOG0977|consensus
Probab=72.32 E-value=41 Score=42.61 Aligned_cols=100 Identities=17% Similarity=0.210 Sum_probs=49.0
Q ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy4724 748 YDRVIKIVGPKKAKLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKLERAEKLIGG 827 (1650)
Q Consensus 748 Y~~v~~~v~P~~~~l~~~e~~l~~~~~~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~~Li~~ 827 (1650)
+.....++.-.+.+++++++....+++++......+..+++++..++..+.....++..|..+...+...|.++.+.+..
T Consensus 115 i~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~ 194 (546)
T KOG0977|consen 115 ITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDD 194 (546)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 33333444444444444444444444444444445555555555555555555555555555555555555555554443
Q ss_pred hchhhccHHHHHHHHHHHHh
Q psy4724 828 LGGEKTRWSEASANLSKALV 847 (1650)
Q Consensus 828 L~~E~~rW~~~~~~~~~~~~ 847 (1650)
=.--+.+-...++.|...+.
T Consensus 195 Etllr~d~~n~~q~Lleel~ 214 (546)
T KOG0977|consen 195 ETLLRVDLQNRVQTLLEELA 214 (546)
T ss_pred HHHHHHHHHhHHHHHHHHHH
Confidence 22223444444444444443
No 171
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=72.26 E-value=82 Score=33.34 Aligned_cols=44 Identities=18% Similarity=0.217 Sum_probs=17.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4724 757 PKKAKLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQK 800 (1650)
Q Consensus 757 P~~~~l~~~e~~l~~~~~~L~~~~~~l~~~~~~l~~l~~~~~~~ 800 (1650)
-+......++......+.+++..+.++..++.+...++.++...
T Consensus 63 ~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~ 106 (151)
T PF11559_consen 63 RLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSL 106 (151)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334444444444444444444444444444433333
No 172
>KOG0738|consensus
Probab=72.07 E-value=4.8 Score=47.90 Aligned_cols=75 Identities=20% Similarity=0.397 Sum_probs=53.0
Q ss_pred hcCCCCceEEEecCCchhhhHHHHHHHhcCCceEEEE---EcccC-CcchhHHHHHHHHHHhccCCCCCEEEEEecCCcC
Q psy4724 71 LQQPKGHAMLITIGGSGAAEVTKLATFMNEYVLFEIE---ILKTY-GLTDWRDDLCRLMKKSGGKDAKPMTFLFSDTQIQ 146 (1650)
Q Consensus 71 l~~p~G~alLvGvgGSGrqSLtrLAafi~~~~~fqIe---itk~Y-g~~~f~eDLk~l~~~~g~~~~k~~vFl~tD~qI~ 146 (1650)
||.|=--+||||+.|+||.-|+|--|-=|+.++|.|. ++..| |.+ |-|-++|...+ -.--|.+ |
T Consensus 241 irrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstltSKwRGeS---EKlvRlLFemA-RfyAPSt-------I- 308 (491)
T KOG0738|consen 241 IRRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLTSKWRGES---EKLVRLLFEMA-RFYAPST-------I- 308 (491)
T ss_pred cccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhhhhhccch---HHHHHHHHHHH-HHhCCce-------e-
Confidence 4678778999999999999999999999999999995 33344 333 44556565555 2344444 3
Q ss_pred chhhHHHHHHHHhh
Q psy4724 147 NEVFVEHINMLLNT 160 (1650)
Q Consensus 147 ~E~fLedIN~lL~t 160 (1650)
|+..|..|-+.
T Consensus 309 ---FiDEIDslcs~ 319 (491)
T KOG0738|consen 309 ---FIDEIDSLCSQ 319 (491)
T ss_pred ---ehhhHHHHHhc
Confidence 55667777554
No 173
>PRK00131 aroK shikimate kinase; Reviewed
Probab=72.00 E-value=7.3 Score=42.00 Aligned_cols=30 Identities=20% Similarity=0.341 Sum_probs=23.6
Q ss_pred ceEEEecCCchhhhHHHHHHHhcCCceEEE
Q psy4724 77 HAMLITIGGSGAAEVTKLATFMNEYVLFEI 106 (1650)
Q Consensus 77 ~alLvGvgGSGrqSLtrLAafi~~~~~fqI 106 (1650)
+.+|+|+.||||.++++..|--.|+.++..
T Consensus 6 ~i~l~G~~GsGKstla~~La~~l~~~~~d~ 35 (175)
T PRK00131 6 NIVLIGFMGAGKSTIGRLLAKRLGYDFIDT 35 (175)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 688999999999999985555557766655
No 174
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=71.77 E-value=2.6 Score=51.19 Aligned_cols=24 Identities=25% Similarity=0.257 Sum_probs=19.2
Q ss_pred CceEEEecCCchhhhH-HHHHHHhc
Q psy4724 76 GHAMLITIGGSGAAEV-TKLATFMN 99 (1650)
Q Consensus 76 G~alLvGvgGSGrqSL-trLAafi~ 99 (1650)
+..+|||++|+||.|+ ++||+.+.
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~ 266 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFH 266 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHH
Confidence 6789999999999987 56666553
No 175
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=71.73 E-value=15 Score=41.52 Aligned_cols=67 Identities=9% Similarity=0.055 Sum_probs=39.6
Q ss_pred cCCCCceEEEecCCchhhhHHHHHHHhc---CCceEEEEEcccCCcchhHHHHHHHHHHhccCCCCCEEEEEecCCcCch
Q psy4724 72 QQPKGHAMLITIGGSGAAEVTKLATFMN---EYVLFEIEILKTYGLTDWRDDLCRLMKKSGGKDAKPMTFLFSDTQIQNE 148 (1650)
Q Consensus 72 ~~p~G~alLvGvgGSGrqSLtrLAafi~---~~~~fqIeitk~Yg~~~f~eDLk~l~~~~g~~~~k~~vFl~tD~qI~~E 148 (1650)
....++.+|+|..||||.+|++..+.-+ +..+.-+.. .++.++...++.. ..+ ..++++.|-+-.+.
T Consensus 35 ~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~------~~~~~~~~~~~~~---~~~-~~lLvIDdi~~l~~ 104 (226)
T TIGR03420 35 GKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPL------AELAQADPEVLEG---LEQ-ADLVCLDDVEAIAG 104 (226)
T ss_pred cCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeH------HHHHHhHHHHHhh---ccc-CCEEEEeChhhhcC
Confidence 3456799999999999999998876543 233433332 2222222222321 122 33677888876543
No 176
>KOG0980|consensus
Probab=71.51 E-value=46 Score=43.77 Aligned_cols=102 Identities=12% Similarity=0.105 Sum_probs=71.0
Q ss_pred hHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4724 743 LAMEVYDRVIKIVGPKKAKLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKLERAE 822 (1650)
Q Consensus 743 ~A~~~Y~~v~~~v~P~~~~l~~~e~~l~~~~~~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~ 822 (1650)
....+|..|.+.++-.+....++++...+....|.+.+.+...++.+.+...+.++...+|...+..+++..+..
T Consensus 442 ~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq~~----- 516 (980)
T KOG0980|consen 442 DLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIELEELQRT----- 516 (980)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 345678888888777777777777776666666666666666666666666666666666666666555544443
Q ss_pred HHHhhhchhhccHHHHHHHHHHHHhhchh
Q psy4724 823 KLIGGLGGEKTRWSEASANLSKALVNCIG 851 (1650)
Q Consensus 823 ~Li~~L~~E~~rW~~~~~~~~~~~~~l~G 851 (1650)
+..+......|...+.....+...+.+
T Consensus 517 --~~~~~qs~~~~~~~l~~~l~~KD~~~~ 543 (980)
T KOG0980|consen 517 --LSNLAQSHNNQLAQLEDLLKQKDRLAA 543 (980)
T ss_pred --hhhHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 677777888888888888877766544
No 177
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=71.27 E-value=6.5 Score=46.48 Aligned_cols=24 Identities=21% Similarity=0.209 Sum_probs=20.2
Q ss_pred CCCceEEEecCCchhhhHHHHHHH
Q psy4724 74 PKGHAMLITIGGSGAAEVTKLATF 97 (1650)
Q Consensus 74 p~G~alLvGvgGSGrqSLtrLAaf 97 (1650)
|+.|+||.|..|+||.+++|.-+.
T Consensus 57 ~~~~vll~G~pGTGKT~lA~~ia~ 80 (284)
T TIGR02880 57 PTLHMSFTGNPGTGKTTVALRMAQ 80 (284)
T ss_pred CCceEEEEcCCCCCHHHHHHHHHH
Confidence 566999999999999999966543
No 178
>PRK08118 topology modulation protein; Reviewed
Probab=71.20 E-value=3.3 Score=44.71 Aligned_cols=30 Identities=20% Similarity=0.293 Sum_probs=23.7
Q ss_pred ceEEEecCCchhhhHHHHHHHhcCCceEEE
Q psy4724 77 HAMLITIGGSGAAEVTKLATFMNEYVLFEI 106 (1650)
Q Consensus 77 ~alLvGvgGSGrqSLtrLAafi~~~~~fqI 106 (1650)
..+++|.+||||.||++.-+-..++.+..+
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~l 32 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHL 32 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceec
Confidence 368999999999999987776666665544
No 179
>PRK04863 mukB cell division protein MukB; Provisional
Probab=71.17 E-value=1.3e+02 Score=43.63 Aligned_cols=30 Identities=10% Similarity=-0.038 Sum_probs=23.7
Q ss_pred HhcCCCCceEEEecCCchhhhHHHHHHHhc
Q psy4724 70 ILQQPKGHAMLITIGGSGAAEVTKLATFMN 99 (1650)
Q Consensus 70 il~~p~G~alLvGvgGSGrqSLtrLAafi~ 99 (1650)
.|....|..+|+|..||||.|+...-+.+.
T Consensus 22 ~~~f~~~~~~l~G~NGaGKSTll~ai~~~l 51 (1486)
T PRK04863 22 TFDLDELVTTLSGGNGAGKSTTMAAFVTAL 51 (1486)
T ss_pred EEEecCCeEEEECCCCCCHHHHHHHHHccc
Confidence 455666889999999999999888655554
No 180
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=71.02 E-value=38 Score=36.95 Aligned_cols=32 Identities=31% Similarity=0.403 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4724 787 LGKLQALRDELAQKSKDKKELEDQIELCKQKL 818 (1650)
Q Consensus 787 ~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl 818 (1650)
.+++++++++-.+...+.++++.+++..+.|+
T Consensus 141 kekl~E~~~EkeeL~~eleele~e~ee~~erl 172 (290)
T COG4026 141 KEKLEELQKEKEELLKELEELEAEYEEVQERL 172 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333
No 181
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=70.94 E-value=13 Score=45.64 Aligned_cols=44 Identities=25% Similarity=0.301 Sum_probs=28.2
Q ss_pred eeehHHHHHHHHHHHH-Hhc-CCCCceEEEecCCchhhhHHHHHHH
Q psy4724 54 IVTFLYIIQHISRLCR-ILQ-QPKGHAMLITIGGSGAAEVTKLATF 97 (1650)
Q Consensus 54 lVlF~~ai~Hv~rI~R-il~-~p~G~alLvGvgGSGrqSLtrLAaf 97 (1650)
++-=++-++.+.+.-+ .+. ...|++++.|+.|+||.++++....
T Consensus 17 l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~ 62 (365)
T TIGR02928 17 IVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMK 62 (365)
T ss_pred CCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHH
Confidence 3333444544444332 222 3347899999999999999987654
No 182
>KOG2138|consensus
Probab=70.73 E-value=2.8 Score=52.57 Aligned_cols=7 Identities=14% Similarity=0.249 Sum_probs=3.1
Q ss_pred HhcCCCc
Q psy4724 1545 IMFGKIP 1551 (1650)
Q Consensus 1545 l~~~~vP 1551 (1650)
.+--+.|
T Consensus 781 ~fgprlp 787 (883)
T KOG2138|consen 781 EFGPRLP 787 (883)
T ss_pred hcCCCCC
Confidence 3444444
No 183
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=70.56 E-value=29 Score=38.50 Aligned_cols=81 Identities=27% Similarity=0.428 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhh----ccH
Q psy4724 760 AKLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKLERAEKLIGGLGGEK----TRW 835 (1650)
Q Consensus 760 ~~l~~~e~~l~~~~~~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~~Li~~L~~E~----~rW 835 (1650)
.++.+++..+......+...+.++..++.++..+..++.+...-.+.+.+++..++..+..++.=+..|..|. .||
T Consensus 102 ~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rw 181 (194)
T PF08614_consen 102 DELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERW 181 (194)
T ss_dssp ------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444455555555555555555555555555555555555555555555555555555555555554 588
Q ss_pred HHHHH
Q psy4724 836 SEASA 840 (1650)
Q Consensus 836 ~~~~~ 840 (1650)
.....
T Consensus 182 m~~k~ 186 (194)
T PF08614_consen 182 MQRKA 186 (194)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76554
No 184
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=70.40 E-value=62 Score=29.61 Aligned_cols=17 Identities=29% Similarity=0.495 Sum_probs=10.7
Q ss_pred hhhccHHHHHHHHHHHH
Q psy4724 830 GEKTRWSEASANLSKAL 846 (1650)
Q Consensus 830 ~E~~rW~~~~~~~~~~~ 846 (1650)
.|+.-|...+..+=.++
T Consensus 53 ~e~~~~~~rl~~LL~kl 69 (72)
T PF06005_consen 53 QERNAWQERLRSLLGKL 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 67777777666554443
No 185
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=70.32 E-value=5.2 Score=50.89 Aligned_cols=53 Identities=23% Similarity=0.379 Sum_probs=40.5
Q ss_pred HHHHHHHHHhcCCCCceEEEecCCchhhhHHH-HHHHhc--CCceEEEEEcccCCc
Q psy4724 62 QHISRLCRILQQPKGHAMLITIGGSGAAEVTK-LATFMN--EYVLFEIEILKTYGL 114 (1650)
Q Consensus 62 ~Hv~rI~Ril~~p~G~alLvGvgGSGrqSLtr-LAafi~--~~~~fqIeitk~Yg~ 114 (1650)
+++..+.+.+..|+|-.|+.|..||||.|+.+ +..++. +..+.+||-..-|..
T Consensus 229 ~~~~~l~~~~~~~~GlilitGptGSGKTTtL~a~L~~l~~~~~~iiTiEDpvE~~~ 284 (486)
T TIGR02533 229 ELLSRFERLIRRPHGIILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPVEYQI 284 (486)
T ss_pred HHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHhccCCCCCcEEEEcCCeeeec
Confidence 45667888899999999999999999999987 555554 345777766544443
No 186
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=70.24 E-value=13 Score=46.30 Aligned_cols=40 Identities=13% Similarity=0.049 Sum_probs=26.4
Q ss_pred HHHHHHHHHHH-HHhc-CCCCceEEEecCCchhhhHHHHHHH
Q psy4724 58 LYIIQHISRLC-RILQ-QPKGHAMLITIGGSGAAEVTKLATF 97 (1650)
Q Consensus 58 ~~ai~Hv~rI~-Ril~-~p~G~alLvGvgGSGrqSLtrLAaf 97 (1650)
++-++.+.+.- ..+. ...+++++.|+.|+||.++++-.+-
T Consensus 36 e~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~ 77 (394)
T PRK00411 36 EEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFE 77 (394)
T ss_pred HHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 33444444332 3332 3346899999999999999986654
No 187
>KOG2028|consensus
Probab=70.16 E-value=9.1 Score=45.08 Aligned_cols=63 Identities=19% Similarity=0.219 Sum_probs=38.8
Q ss_pred CceEEEecCCchhhhHHHHHHHhcC-CceEEEEEccc-CCcchhHHHHHHHHHHhcc--CCCCCEEEEEec
Q psy4724 76 GHAMLITIGGSGAAEVTKLATFMNE-YVLFEIEILKT-YGLTDWRDDLCRLMKKSGG--KDAKPMTFLFSD 142 (1650)
Q Consensus 76 G~alLvGvgGSGrqSLtrLAafi~~-~~~fqIeitk~-Yg~~~f~eDLk~l~~~~g~--~~~k~~vFl~tD 142 (1650)
-.++|-|+.|.||.||+||-+-.+. ...|-|+++-+ -+.+ |++.++.++-- .-.++-++||-|
T Consensus 163 pSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~a~t~----dvR~ife~aq~~~~l~krkTilFiD 229 (554)
T KOG2028|consen 163 PSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATNAKTN----DVRDIFEQAQNEKSLTKRKTILFID 229 (554)
T ss_pred CceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccccchH----HHHHHHHHHHHHHhhhcceeEEEeH
Confidence 4789999999999999999888763 34555666533 3444 34434443310 112344556666
No 188
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=69.94 E-value=26 Score=38.85 Aligned_cols=107 Identities=19% Similarity=0.188 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhccHHH
Q psy4724 758 KKAKLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKLERAEKLIGGLGGEKTRWSE 837 (1650)
Q Consensus 758 ~~~~l~~~e~~l~~~~~~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~~Li~~L~~E~~rW~~ 837 (1650)
.+..+.++...-.....+|.....++..++.++......+.....+...|+.++......+.-=.+.+..|.+|..-=.-
T Consensus 79 l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l 158 (194)
T PF08614_consen 79 LQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQL 158 (194)
T ss_dssp -----------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555555555555555555555555555555556655555555566666666666665555
Q ss_pred HHHHHHHHHhhchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhh
Q psy4724 838 ASANLSKALVNCIGDILICAGIITYLGAFTVDFRNDLIEQWKSLS 882 (1650)
Q Consensus 838 ~~~~~~~~~~~l~Gd~ll~aa~i~Y~G~f~~~~R~~l~~~w~~~~ 882 (1650)
+...++.+...+ ......|+..|....
T Consensus 159 ~~~~~e~k~~~l------------------~~En~~Lv~Rwm~~k 185 (194)
T PF08614_consen 159 QLNMLEEKLRKL------------------EEENRELVERWMQRK 185 (194)
T ss_dssp HHHHHHHHHHHH------------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH------------------HHHHHHHHHHHHHHH
Confidence 666666666654 344557777776543
No 189
>KOG0804|consensus
Probab=69.84 E-value=77 Score=38.67 Aligned_cols=108 Identities=16% Similarity=0.091 Sum_probs=60.1
Q ss_pred chhhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H
Q psy4724 740 FQVLAMEVYDRVIKIVGPKKAKLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELC----K 815 (1650)
Q Consensus 740 ~Wv~A~~~Y~~v~~~v~P~~~~l~~~e~~l~~~~~~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~----~ 815 (1650)
+|-.-|.+|.. ..++-.++.++.+-.+.......+...++.-+.++.++++++..+++...|++.+++.-..+ .
T Consensus 336 y~e~~~~e~~q--sqlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~ 413 (493)
T KOG0804|consen 336 YYEQIMSEYEQ--SQLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQD 413 (493)
T ss_pred HHHHHHHHHHH--HHHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 34444445544 34555555555555555555555555555566666666666666666666665555322211 2
Q ss_pred HHHHHHHHHHhhhchhhccHHHHHHHHHHHHhhc
Q psy4724 816 QKLERAEKLIGGLGGEKTRWSEASANLSKALVNC 849 (1650)
Q Consensus 816 ~rl~ra~~Li~~L~~E~~rW~~~~~~~~~~~~~l 849 (1650)
.....++++...+......-.+++.+|++++..|
T Consensus 414 vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQlrDl 447 (493)
T KOG0804|consen 414 VWRGKLKELEEREKEALGSKDEKITDLQEQLRDL 447 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 2334455555556566666667777777776654
No 190
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=69.81 E-value=95 Score=31.49 Aligned_cols=90 Identities=20% Similarity=0.234 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhccHH
Q psy4724 760 AKLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDEL---AQKSKDKKELEDQIELCKQKLERAEKLIGGLGGEKTRWS 836 (1650)
Q Consensus 760 ~~l~~~e~~l~~~~~~L~~~~~~l~~~~~~l~~l~~~~---~~~~~e~~~l~~~~~~~~~rl~ra~~Li~~L~~E~~rW~ 836 (1650)
..+...+.++...+.++.....+-..+.+.|..|.... .....+...|+.+++..+.|.+.+-.+++-=+.+..-=+
T Consensus 23 s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGEK~E~veEL~ 102 (120)
T PF12325_consen 23 SQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGEKSEEVEELR 102 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 34444444444444444444444444444444443333 344455667777888888887777777765555555555
Q ss_pred HHHHHHHHHHhhc
Q psy4724 837 EASANLSKALVNC 849 (1650)
Q Consensus 837 ~~~~~~~~~~~~l 849 (1650)
..+.+++.-+...
T Consensus 103 ~Dv~DlK~myr~Q 115 (120)
T PF12325_consen 103 ADVQDLKEMYREQ 115 (120)
T ss_pred HHHHHHHHHHHHH
Confidence 6666665555443
No 191
>KOG1029|consensus
Probab=69.76 E-value=30 Score=44.38 Aligned_cols=100 Identities=14% Similarity=0.145 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhccHHHHH
Q psy4724 760 AKLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKLERAEKLIGGLGGEKTRWSEAS 839 (1650)
Q Consensus 760 ~~l~~~e~~l~~~~~~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~~Li~~L~~E~~rW~~~~ 839 (1650)
.+...++.+++..+.++++...+|.++...+..-+..++......+..-.++...+.|+.-.+.-+.-|..|+..|.+++
T Consensus 437 ak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~ql 516 (1118)
T KOG1029|consen 437 AKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQELNHQL 516 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 34444455555555555555555555555444444444444444444444555555555555555567889999999988
Q ss_pred HHHHHHHhhchh-HHHHHHHH
Q psy4724 840 ANLSKALVNCIG-DILICAGI 859 (1650)
Q Consensus 840 ~~~~~~~~~l~G-d~ll~aa~ 859 (1650)
...+.....-.+ -+.|-|++
T Consensus 517 kq~q~a~~~~~~~~s~L~aa~ 537 (1118)
T KOG1029|consen 517 KQKQSAHKETTQRKSELEAAR 537 (1118)
T ss_pred HHhhhhccCcchHHHHHHHHH
Confidence 877766655544 45555554
No 192
>PF13245 AAA_19: Part of AAA domain
Probab=69.74 E-value=5.9 Score=36.60 Aligned_cols=31 Identities=13% Similarity=0.053 Sum_probs=23.4
Q ss_pred HHHhcCCCCceEEEecCCchhh-hHHHHHHHhc
Q psy4724 68 CRILQQPKGHAMLITIGGSGAA-EVTKLATFMN 99 (1650)
Q Consensus 68 ~Ril~~p~G~alLvGvgGSGrq-SLtrLAafi~ 99 (1650)
.+.++ +.+..++.|+.||||. ++.++++++.
T Consensus 4 ~~al~-~~~~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 4 RRALA-GSPLFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred HHHHh-hCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 34556 5666777999999999 7777777775
No 193
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=69.65 E-value=5.1 Score=40.35 Aligned_cols=29 Identities=14% Similarity=0.174 Sum_probs=22.6
Q ss_pred eEEEecCCchhhhHHHHHHHhcCCceEEE
Q psy4724 78 AMLITIGGSGAAEVTKLATFMNEYVLFEI 106 (1650)
Q Consensus 78 alLvGvgGSGrqSLtrLAafi~~~~~fqI 106 (1650)
.+++|+.||||.|+++..+=-.|+.++.+
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~ 30 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISM 30 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEe
Confidence 47899999999999887766557665544
No 194
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=69.48 E-value=64 Score=43.11 Aligned_cols=87 Identities=9% Similarity=0.172 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhccHHHHH
Q psy4724 760 AKLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKLERAEKLIGGLGGEKTRWSEAS 839 (1650)
Q Consensus 760 ~~l~~~e~~l~~~~~~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~~Li~~L~~E~~rW~~~~ 839 (1650)
.++..+..+.+....+|+..+++.+.+.++-+.|.+.|+++....+.|.+.++.+-..+. .-...|+..-..|.+++
T Consensus 565 ~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l~---~~~P~LS~AEr~~~~EL 641 (717)
T PF10168_consen 565 RRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLLN---SQLPVLSEAEREFKKEL 641 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---ccCCCCCHHHHHHHHHH
Confidence 344455555556666666666666666666667777777777666666666655554442 22445777668999999
Q ss_pred HHHHHHHhhc
Q psy4724 840 ANLSKALVNC 849 (1650)
Q Consensus 840 ~~~~~~~~~l 849 (1650)
+.++.++..+
T Consensus 642 ~~~~~~l~~l 651 (717)
T PF10168_consen 642 ERMKDQLQDL 651 (717)
T ss_pred HHHHHHHHHH
Confidence 9999987653
No 195
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=69.28 E-value=13 Score=47.76 Aligned_cols=69 Identities=14% Similarity=0.222 Sum_probs=53.5
Q ss_pred hcCCCCceEEEecCCchhhhHHHHHHHhcCCceEEEEEc----ccCCcchhHHHHHHHHHHhccCCCCCEEEEEecC
Q psy4724 71 LQQPKGHAMLITIGGSGAAEVTKLATFMNEYVLFEIEIL----KTYGLTDWRDDLCRLMKKSGGKDAKPMTFLFSDT 143 (1650)
Q Consensus 71 l~~p~G~alLvGvgGSGrqSLtrLAafi~~~~~fqIeit----k~Yg~~~f~eDLk~l~~~~g~~~~k~~vFl~tD~ 143 (1650)
...|...+||.|+.|+||..|++-.|.-.+..++.+... +-+|.. --.++.++.+|= +..|++++|.+-
T Consensus 272 ~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~sk~vGes--ek~ir~~F~~A~--~~~p~iiFiDEi 344 (494)
T COG0464 272 GLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSKWVGES--EKNIRELFEKAR--KLAPSIIFIDEI 344 (494)
T ss_pred CCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhccccchH--HHHHHHHHHHHH--cCCCcEEEEEch
Confidence 445666899999999999999999999999999999766 223333 456788888875 677888777653
No 196
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=69.23 E-value=77 Score=37.88 Aligned_cols=56 Identities=20% Similarity=0.305 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4724 761 KLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQ 816 (1650)
Q Consensus 761 ~l~~~e~~l~~~~~~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~ 816 (1650)
.+..+.+++.....++..++.++.+++++++.+....++...++.++..+++.++.
T Consensus 205 eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~ 260 (312)
T smart00787 205 ELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEK 260 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444455555555555555555554444444444444443
No 197
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=69.22 E-value=6.3 Score=51.97 Aligned_cols=64 Identities=17% Similarity=0.233 Sum_probs=48.9
Q ss_pred eeehHHHHHHHHHHHHHh-------cCCCCceEEEecCCchhhhHHH-HHHHhcCCceEEEEEcccCCcchhHHHH
Q psy4724 54 IVTFLYIIQHISRLCRIL-------QQPKGHAMLITIGGSGAAEVTK-LATFMNEYVLFEIEILKTYGLTDWRDDL 121 (1650)
Q Consensus 54 lVlF~~ai~Hv~rI~Ril-------~~p~G~alLvGvgGSGrqSLtr-LAafi~~~~~fqIeitk~Yg~~~f~eDL 121 (1650)
+|==++|+.+|++.-|-- +.|-|..|++|+.|.||.-|++ ||.++-|-+--=| .++++||.|--
T Consensus 493 ViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~ali----R~DMSEy~EkH 564 (786)
T COG0542 493 VIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALI----RIDMSEYMEKH 564 (786)
T ss_pred eeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccce----eechHHHHHHH
Confidence 455589999999876653 5688999999999999999986 8888877543333 34778888744
No 198
>PRK10436 hypothetical protein; Provisional
Probab=69.15 E-value=6.5 Score=49.56 Aligned_cols=53 Identities=21% Similarity=0.281 Sum_probs=40.1
Q ss_pred HHHHHHHHHhcCCCCceEEEecCCchhhhHH-HHHHHhc--CCceEEEEEcccCCc
Q psy4724 62 QHISRLCRILQQPKGHAMLITIGGSGAAEVT-KLATFMN--EYVLFEIEILKTYGL 114 (1650)
Q Consensus 62 ~Hv~rI~Ril~~p~G~alLvGvgGSGrqSLt-rLAafi~--~~~~fqIeitk~Yg~ 114 (1650)
+++..+-+.+..|+|-.|+.|+.||||.|+. .+-.++. +..+.+||-..-|..
T Consensus 205 ~~~~~l~~~~~~~~GliLvtGpTGSGKTTtL~a~l~~~~~~~~~i~TiEDPvE~~l 260 (462)
T PRK10436 205 AQLAQFRQALQQPQGLILVTGPTGSGKTVTLYSALQTLNTAQINICSVEDPVEIPL 260 (462)
T ss_pred HHHHHHHHHHHhcCCeEEEECCCCCChHHHHHHHHHhhCCCCCEEEEecCCccccC
Confidence 4667788889999999999999999999954 4445554 345777776655544
No 199
>KOG2573|consensus
Probab=69.08 E-value=1.8 Score=50.75 Aligned_cols=6 Identities=50% Similarity=0.678 Sum_probs=3.0
Q ss_pred eccCcc
Q psy4724 1402 VSLGQG 1407 (1650)
Q Consensus 1402 islGqg 1407 (1650)
.||||.
T Consensus 252 ~SMG~d 257 (498)
T KOG2573|consen 252 NSMGQD 257 (498)
T ss_pred hccCCC
Confidence 355554
No 200
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=68.99 E-value=77 Score=36.03 Aligned_cols=79 Identities=13% Similarity=0.157 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhccHHHHHHHHHHHHhhc
Q psy4724 771 VQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKLERAEKLIGGLGGEKTRWSEASANLSKALVNC 849 (1650)
Q Consensus 771 ~~~~~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~~Li~~L~~E~~rW~~~~~~~~~~~~~l 849 (1650)
....++......+...+..|.+++.+.+...+|+....+++..+..-+..-+.+|..+..|+.+=.+.+..+...+..|
T Consensus 15 k~k~~i~~e~~~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~L 93 (230)
T PF10146_consen 15 KLKNEILQEVESLENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPL 93 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444445555666666667777777777777777777777777777777777777777666666666555544
No 201
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=68.93 E-value=23 Score=43.27 Aligned_cols=99 Identities=15% Similarity=0.307 Sum_probs=54.8
Q ss_pred ceeehHHHHHHHHHHHHHhcCCCCc-eEEEecCCchhhhHHHHHH-Hh-cC----------------------CceEEEE
Q psy4724 53 DIVTFLYIIQHISRLCRILQQPKGH-AMLITIGGSGAAEVTKLAT-FM-NE----------------------YVLFEIE 107 (1650)
Q Consensus 53 ~lVlF~~ai~Hv~rI~Ril~~p~G~-alLvGvgGSGrqSLtrLAa-fi-~~----------------------~~~fqIe 107 (1650)
++|--+.+++++.+..+ +.-.+| .||.|+.|+||.++++.-+ .+ |+ .++..++
T Consensus 15 ~iig~~~~~~~l~~~~~--~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~~~~~ 92 (355)
T TIGR02397 15 DVIGQEHIVQTLKNAIK--NGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDVIEID 92 (355)
T ss_pred hccCcHHHHHHHHHHHH--cCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEee
Confidence 46666777776665332 122345 4789999999999997654 32 11 2344443
Q ss_pred EcccCCcchhHHHHHHHHHHhcc--CCCCCEEEEEecCCcCchhhHHHHHHHHhh
Q psy4724 108 ILKTYGLTDWRDDLCRLMKKSGG--KDAKPMTFLFSDTQIQNEVFVEHINMLLNT 160 (1650)
Q Consensus 108 itk~Yg~~~f~eDLk~l~~~~g~--~~~k~~vFl~tD~qI~~E~fLedIN~lL~t 160 (1650)
-...-+.. +++.++..+.. ..++.-|+++.|.+-... +..|.+|.+
T Consensus 93 ~~~~~~~~----~~~~l~~~~~~~p~~~~~~vviidea~~l~~---~~~~~Ll~~ 140 (355)
T TIGR02397 93 AASNNGVD----DIREILDNVKYAPSSGKYKVYIIDEVHMLSK---SAFNALLKT 140 (355)
T ss_pred ccccCCHH----HHHHHHHHHhcCcccCCceEEEEeChhhcCH---HHHHHHHHH
Confidence 33222333 34444443321 235556778888764332 345677665
No 202
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=68.89 E-value=39 Score=48.58 Aligned_cols=31 Identities=19% Similarity=0.310 Sum_probs=25.0
Q ss_pred hcCCCCceEEEecCCchhhhHHHHHHHhcCC
Q psy4724 71 LQQPKGHAMLITIGGSGAAEVTKLATFMNEY 101 (1650)
Q Consensus 71 l~~p~G~alLvGvgGSGrqSLtrLAafi~~~ 101 (1650)
|....|.-+++|+.||||.++.---.|+.|.
T Consensus 19 i~f~~~~~~i~G~NGsGKS~ildAi~~~l~~ 49 (1164)
T TIGR02169 19 IPFSKGFTVISGPNGSGKSNIGDAILFALGL 49 (1164)
T ss_pred EeecCCeEEEECCCCCCHHHHHHHHHHHhcc
Confidence 3455788899999999999998777777654
No 203
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=68.64 E-value=22 Score=46.48 Aligned_cols=102 Identities=18% Similarity=0.270 Sum_probs=59.0
Q ss_pred ceeehHHHHHHHHHHHHHhcCC-CCce-EEEecCCchhhhHHHHHHHhcCC------------------------ceEEE
Q psy4724 53 DIVTFLYIIQHISRLCRILQQP-KGHA-MLITIGGSGAAEVTKLATFMNEY------------------------VLFEI 106 (1650)
Q Consensus 53 ~lVlF~~ai~Hv~rI~Ril~~p-~G~a-lLvGvgGSGrqSLtrLAafi~~~------------------------~~fqI 106 (1650)
++|--+.++.++. +.+... -.|+ |+.|..|+||.|++|+-+--..| +++.|
T Consensus 17 ~iiGq~~v~~~L~---~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~~~d~~ei 93 (576)
T PRK14965 17 DLTGQEHVSRTLQ---NAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRSVDVFEI 93 (576)
T ss_pred HccCcHHHHHHHH---HHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCCCCCeeee
Confidence 3444444444333 333332 3577 89999999999999875433221 24555
Q ss_pred EEcccCCcchhHHHHHHHHHHhccCCCCCEEEEEecCCcCchhhHHHHHHHHhhhh
Q psy4724 107 EILKTYGLTDWRDDLCRLMKKSGGKDAKPMTFLFSDTQIQNEVFVEHINMLLNTAR 162 (1650)
Q Consensus 107 eitk~Yg~~~f~eDLk~l~~~~g~~~~k~~vFl~tD~qI~~E~fLedIN~lL~tge 162 (1650)
.-..+.|+.+.|+ |..-..... ..++.-|++|.+.+-... +..|.||.+=|
T Consensus 94 d~~s~~~v~~ir~-l~~~~~~~p-~~~~~KVvIIdev~~Lt~---~a~naLLk~LE 144 (576)
T PRK14965 94 DGASNTGVDDIRE-LRENVKYLP-SRSRYKIFIIDEVHMLST---NAFNALLKTLE 144 (576)
T ss_pred eccCccCHHHHHH-HHHHHHhcc-ccCCceEEEEEChhhCCH---HHHHHHHHHHH
Confidence 4444567666554 333333233 345566888888765433 45688887744
No 204
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=68.43 E-value=41 Score=28.93 Aligned_cols=46 Identities=15% Similarity=0.308 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4724 775 KLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKLER 820 (1650)
Q Consensus 775 ~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~r 820 (1650)
.+.....+++.+..++.+|..+.+....+.+..+.|+.....||+.
T Consensus 4 kid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlDN 49 (56)
T PF04728_consen 4 KIDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLDN 49 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455556666677777777777777776666667777666666653
No 205
>PRK04863 mukB cell division protein MukB; Provisional
Probab=68.42 E-value=53 Score=47.50 Aligned_cols=95 Identities=17% Similarity=0.222 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhccHHHHHHHHHHHHhhchhHHHHHHHHHHh
Q psy4724 783 LATVLGKLQALRDELAQKSKDKKELEDQIELCKQKLERAEKLIGGLGGEKTRWSEASANLSKALVNCIGDILICAGIITY 862 (1650)
Q Consensus 783 l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~~Li~~L~~E~~rW~~~~~~~~~~~~~l~Gd~ll~aa~i~Y 862 (1650)
+......+..++..+++...+.+.++.+++..+.++..++.-+..|..+.......+..++.+...+-...--....=..
T Consensus 350 i~~l~~~LeELee~Lee~eeeLeeleeeleeleeEleelEeeLeeLqeqLaelqqel~elQ~el~q~qq~i~~Le~~~~~ 429 (1486)
T PRK04863 350 IERYQADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQALERAKQL 429 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444444444444444444444444444444444443333333344556
Q ss_pred cC--CCCHHHHHHHHHH
Q psy4724 863 LG--AFTVDFRNDLIEQ 877 (1650)
Q Consensus 863 ~G--~f~~~~R~~l~~~ 877 (1650)
|| +|+.+.=...+..
T Consensus 430 ~~~~~~SdEeLe~~Len 446 (1486)
T PRK04863 430 CGLPDLTADNAEDWLEE 446 (1486)
T ss_pred hCCCCCCHHHHHHHHHH
Confidence 66 7776654444433
No 206
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=68.40 E-value=20 Score=44.03 Aligned_cols=83 Identities=10% Similarity=0.131 Sum_probs=51.9
Q ss_pred CCceEEEecCCchhhhHHHHHHHh-cC----CceEEEEE-cccCCcchhHHHHH----------------HHHH------
Q psy4724 75 KGHAMLITIGGSGAAEVTKLATFM-NE----YVLFEIEI-LKTYGLTDWRDDLC----------------RLMK------ 126 (1650)
Q Consensus 75 ~G~alLvGvgGSGrqSLtrLAafi-~~----~~~fqIei-tk~Yg~~~f~eDLk----------------~l~~------ 126 (1650)
+..+++||.+|+||.+|.++.+.- .. ..++-.-+ -+.+...+|.+.+. ++..
T Consensus 168 Gq~~~IvG~~g~GKTtL~~~i~~~I~~nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e~A 247 (415)
T TIGR00767 168 GQRGLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIEKA 247 (415)
T ss_pred CCEEEEECCCCCChhHHHHHHHHhhcccCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHHHH
Confidence 447999999999999999875443 21 13333333 35578888888872 1111
Q ss_pred -HhccCCCCCEEEEEecCCcCchhhHHHHHH-HHhhhh
Q psy4724 127 -KSGGKDAKPMTFLFSDTQIQNEVFVEHINM-LLNTAR 162 (1650)
Q Consensus 127 -~~g~~~~k~~vFl~tD~qI~~E~fLedIN~-lL~tge 162 (1650)
..- -.|+.+++++.+.|= |-..-|. -+++|+
T Consensus 248 e~~~-~~GkdVVLlIDEitR----~arAqrei~~~~G~ 280 (415)
T TIGR00767 248 KRLV-EHKKDVVILLDSITR----LARAYNTVTPASGK 280 (415)
T ss_pred HHHH-HcCCCeEEEEEChhH----HHHHHHHhHhhcCC
Confidence 111 246778877777763 5444444 577887
No 207
>PF10278 Med19: Mediator of RNA pol II transcription subunit 19 ; InterPro: IPR019403 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med19 represents a family of conserved proteins which are members of the multi-protein co-activator Mediator complex []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=68.35 E-value=2 Score=45.71 Aligned_cols=19 Identities=16% Similarity=0.253 Sum_probs=12.2
Q ss_pred HHHHHHHHHhhCCCCCCHH
Q psy4724 1467 NVRIIDELLGKFPEQFDEE 1485 (1650)
Q Consensus 1467 ~~~~~~~~~~~lp~~~~~~ 1485 (1650)
|.+-+..+|..||..||..
T Consensus 39 lke~lSsFLp~lpG~~~~~ 57 (178)
T PF10278_consen 39 LKESLSSFLPHLPGNIDLP 57 (178)
T ss_pred chhhHHHHccCCCCcccCC
Confidence 3445567777777777743
No 208
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=68.27 E-value=1.3e+02 Score=32.19 Aligned_cols=48 Identities=27% Similarity=0.441 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy4724 782 QLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKLERAEKLIGGLG 829 (1650)
Q Consensus 782 ~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~~Li~~L~ 829 (1650)
+..+++-+|.-++.+-.......+.|+..+..+...++||+.|++..+
T Consensus 85 ~A~~lQ~~L~~~re~E~qLr~rRD~LErrl~~l~~tierAE~l~sqi~ 132 (159)
T PF05384_consen 85 EAHELQVRLAMLREREKQLRERRDELERRLRNLEETIERAENLVSQIG 132 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455556666666666667777777777777777788888776543
No 209
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=68.23 E-value=1.5e+02 Score=30.63 Aligned_cols=26 Identities=23% Similarity=0.373 Sum_probs=16.3
Q ss_pred HHhhhchhhccHHHHHHHHHHHHhhc
Q psy4724 824 LIGGLGGEKTRWSEASANLSKALVNC 849 (1650)
Q Consensus 824 Li~~L~~E~~rW~~~~~~~~~~~~~l 849 (1650)
.-..|......|...-..++..+..+
T Consensus 85 a~~~l~~~e~sw~~qk~~le~e~~~~ 110 (132)
T PF07926_consen 85 AKAELEESEASWEEQKEQLEKELSEL 110 (132)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 33444555667887777777766544
No 210
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=68.12 E-value=21 Score=43.89 Aligned_cols=100 Identities=14% Similarity=0.227 Sum_probs=54.7
Q ss_pred ceeehHHHHHHHHHHHHHhcCCCCceEEEecCCchhhhHHHHHHHhcC------------CceEEEEEcccCCcchhHHH
Q psy4724 53 DIVTFLYIIQHISRLCRILQQPKGHAMLITIGGSGAAEVTKLATFMNE------------YVLFEIEILKTYGLTDWRDD 120 (1650)
Q Consensus 53 ~lVlF~~ai~Hv~rI~Ril~~p~G~alLvGvgGSGrqSLtrLAafi~~------------~~~fqIeitk~Yg~~~f~eD 120 (1650)
++|--+++++++.+..+- .....|.||.|..|+||.++++..+-... +.++++.-...-+ .++
T Consensus 18 ~iig~~~~~~~l~~~i~~-~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~ 92 (367)
T PRK14970 18 DVVGQSHITNTLLNAIEN-NHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNS----VDD 92 (367)
T ss_pred hcCCcHHHHHHHHHHHHc-CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCC----HHH
Confidence 456666666655444321 22335788999999999999876555322 2333332221112 355
Q ss_pred HHHHHHHhcc--CCCCCEEEEEecCCcCchhhHHHHHHHHhh
Q psy4724 121 LCRLMKKSGG--KDAKPMTFLFSDTQIQNEVFVEHINMLLNT 160 (1650)
Q Consensus 121 Lk~l~~~~g~--~~~k~~vFl~tD~qI~~E~fLedIN~lL~t 160 (1650)
++.++..+.. ..+++-++++.|.+-... ..+|.+|.+
T Consensus 93 i~~l~~~~~~~p~~~~~kiviIDE~~~l~~---~~~~~ll~~ 131 (367)
T PRK14970 93 IRNLIDQVRIPPQTGKYKIYIIDEVHMLSS---AAFNAFLKT 131 (367)
T ss_pred HHHHHHHHhhccccCCcEEEEEeChhhcCH---HHHHHHHHH
Confidence 6555554321 234566778887664333 235666654
No 211
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=67.97 E-value=80 Score=30.66 Aligned_cols=70 Identities=11% Similarity=0.177 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhch
Q psy4724 761 KLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKLERAEKLIGGLGG 830 (1650)
Q Consensus 761 ~l~~~e~~l~~~~~~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~~Li~~L~~ 830 (1650)
+.++..........++...++.+..+...+..-..+|-++.+.++.+..++..+...+.+...++..|.+
T Consensus 11 a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~~~i~~L~~ 80 (96)
T PF08647_consen 11 AFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKSSELIEQLKE 80 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3344444444455555555555666666666666777788888888888888888888888888888866
No 212
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=67.96 E-value=75 Score=36.47 Aligned_cols=61 Identities=18% Similarity=0.223 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4724 758 KKAKLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKL 818 (1650)
Q Consensus 758 ~~~~l~~~e~~l~~~~~~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl 818 (1650)
+..++.++......+...+......|..++..|.......+.+......|+.++..+...|
T Consensus 97 lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~l 157 (237)
T PF00261_consen 97 LEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNL 157 (237)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444444444444444444444444333333
No 213
>PRK08084 DNA replication initiation factor; Provisional
Probab=67.78 E-value=23 Score=40.66 Aligned_cols=92 Identities=13% Similarity=0.114 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHhcCC-CCceEEEecCCchhhhHHHHHHHh-c--CCceEEEEEcccCCcchhHHHHHHHHHHhccCCC
Q psy4724 58 LYIIQHISRLCRILQQP-KGHAMLITIGGSGAAEVTKLATFM-N--EYVLFEIEILKTYGLTDWRDDLCRLMKKSGGKDA 133 (1650)
Q Consensus 58 ~~ai~Hv~rI~Ril~~p-~G~alLvGvgGSGrqSLtrLAafi-~--~~~~fqIeitk~Yg~~~f~eDLk~l~~~~g~~~~ 133 (1650)
..|+..+.++.. .+ ..+.+|.|..|+||..|.+..+.- + |+.+.-+.... ...+..++.+.|..+
T Consensus 30 ~~a~~~l~~~~~---~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~---~~~~~~~~~~~~~~~----- 98 (235)
T PRK08084 30 DSLLAALQNALR---QEHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDK---RAWFVPEVLEGMEQL----- 98 (235)
T ss_pred HHHHHHHHHHHh---CCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHH---HhhhhHHHHHHhhhC-----
Confidence 446665555544 33 358899999999999999965543 2 44444444332 111223333333221
Q ss_pred CCEEEEEecCCcCc------hhhHHHHHHHHhhhh
Q psy4724 134 KPMTFLFSDTQIQN------EVFVEHINMLLNTAR 162 (1650)
Q Consensus 134 k~~vFl~tD~qI~~------E~fLedIN~lL~tge 162 (1650)
-++++.|-|-.. +.+..-+|.+..+|.
T Consensus 99 --dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~ 131 (235)
T PRK08084 99 --SLVCIDNIECIAGDELWEMAIFDLYNRILESGR 131 (235)
T ss_pred --CEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCC
Confidence 356778876542 234555677766553
No 214
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=67.78 E-value=19 Score=49.49 Aligned_cols=56 Identities=20% Similarity=0.267 Sum_probs=40.2
Q ss_pred eeehHHHHHHHHHHHHHhc-------CCCCceEEEecCCchhhhHHHHHHH-hc--CCceEEEEEc
Q psy4724 54 IVTFLYIIQHISRLCRILQ-------QPKGHAMLITIGGSGAAEVTKLATF-MN--EYVLFEIEIL 109 (1650)
Q Consensus 54 lVlF~~ai~Hv~rI~Ril~-------~p~G~alLvGvgGSGrqSLtrLAaf-i~--~~~~fqIeit 109 (1650)
++==+.||+-|++..+-.+ .|.|+.||+|+.|+||..|+|.-+. +. +..+..+.++
T Consensus 567 v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s 632 (852)
T TIGR03346 567 VVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMS 632 (852)
T ss_pred cCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEech
Confidence 4445788888887766543 3789999999999999999886554 33 4456555544
No 215
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=67.72 E-value=5.3 Score=44.49 Aligned_cols=35 Identities=20% Similarity=0.359 Sum_probs=26.6
Q ss_pred CCceEEEecCCchhhhHHH-HHHHhcC---CceEEEEEc
Q psy4724 75 KGHAMLITIGGSGAAEVTK-LATFMNE---YVLFEIEIL 109 (1650)
Q Consensus 75 ~G~alLvGvgGSGrqSLtr-LAafi~~---~~~fqIeit 109 (1650)
+|-.+++|+.||||.|+.+ |+.++.. ..++.+|-.
T Consensus 1 ~GlilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~ 39 (198)
T cd01131 1 RGLVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDP 39 (198)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCC
Confidence 5889999999999999987 6777753 245555543
No 216
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=67.61 E-value=7.7 Score=46.15 Aligned_cols=36 Identities=17% Similarity=0.192 Sum_probs=28.0
Q ss_pred CCCceEEEecCCchhhhHHH-HHHHhc----CCceEEEEEc
Q psy4724 74 PKGHAMLITIGGSGAAEVTK-LATFMN----EYVLFEIEIL 109 (1650)
Q Consensus 74 p~G~alLvGvgGSGrqSLtr-LAafi~----~~~~fqIeit 109 (1650)
.+|+.|++|..||||.|+.+ |+.++. +..+..||-+
T Consensus 131 ~~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~ 171 (299)
T TIGR02782 131 ARKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDT 171 (299)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCc
Confidence 68999999999999999988 566764 3456666533
No 217
>KOG2264|consensus
Probab=67.51 E-value=35 Score=42.07 Aligned_cols=62 Identities=19% Similarity=0.280 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4724 762 LAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKLERAEK 823 (1650)
Q Consensus 762 l~~~e~~l~~~~~~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~~ 823 (1650)
++-...+|.+.+.+-++.+++++++..++++|+......+.|..+|+.+++.++..++-+..
T Consensus 88 ~~sVs~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~ 149 (907)
T KOG2264|consen 88 LASVSLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELRE 149 (907)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHh
Confidence 33344455556666667778889999999999999999999999999999988877765543
No 218
>PRK13430 F0F1 ATP synthase subunit delta; Provisional
Probab=67.26 E-value=27 Score=40.95 Aligned_cols=208 Identities=16% Similarity=0.155 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hchhh---------ccHHHHHHHHHHHHhhchhH
Q psy4724 783 LATVLGKLQALRDELAQKSKDKKELEDQIELCKQKLERAEKLIGG-LGGEK---------TRWSEASANLSKALVNCIGD 852 (1650)
Q Consensus 783 l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~~Li~~-L~~E~---------~rW~~~~~~~~~~~~~l~Gd 852 (1650)
+..+-+.|-...+-++....=...|-+-....+.|..-+..|++| ++..- .||.... ++...++.+--.
T Consensus 27 ~~~~~~eL~~v~~~l~~~~~lrral~dp~~~~~~k~~L~~~l~~~kv~~~~~~~~~~~v~~rWs~~~-dl~~~~e~l~~~ 105 (271)
T PRK13430 27 AAQIGNELFAVVAVLDRERSLRRALTDPARPPEAKVELVKRLFGGKVSPATLEVVSDAVRQRWSRPR-DLADALEELGVR 105 (271)
T ss_pred HHHHHHHHHHHHHHHccchHHHHhcCCCCCChHHHHHHHHHHhcccCCHHHHHHHHHHHHhhccCch-hHHHHHHHHHHH
Confidence 334444555554444443333334444444555666666666655 33221 4887633 333444444333
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhcCCCCCCCCccccccCCH----HHHHH-H--HhCCCCCCchhhhhhH-
Q psy4724 853 ILICAGIITYLGAFTVDFRNDLIEQWKSLSSQEQMPFTLSFSMITTLGDA----VKIRS-W--NINGLPVDNFSIENGI- 924 (1650)
Q Consensus 853 ~ll~aa~i~Y~G~f~~~~R~~l~~~w~~~~~~~~i~~~~~~~~~~~l~~~----~~~~~-w--~~~gLP~D~~s~enai- 924 (1650)
+|+..| .....+..|...+....--+..+-.+..+|.|| ..... . ...|- .+. .+.|.+
T Consensus 106 ALf~~A-----------~e~g~ld~v~~eL~~~~~~l~~~~~l~~~L~~p~i~~e~K~~ll~~l~~~~-~~~-~~~nfl~ 172 (271)
T PRK13430 106 ALLASA-----------EAQGALDDVEDELFRLGRILASNPELRLALSDRAAPAEAKRELLARLLYGK-VTP-VTERLAE 172 (271)
T ss_pred HHHHHH-----------HHcCCHHHHHHHHHHHHHHHHcCHHHHHHHhCCCCCHHHHHHHHHHHHhcc-CCH-HHHHHHH
Confidence 333322 222334455555544222222233445555543 11111 1 11121 122 233443
Q ss_pred HhhcCCCcccccCchhHHHHHHHHhccCC-cEEEec--CChhHHHHHHHHH--HcCCeEEEecccccccccchHHHhHHH
Q psy4724 925 ILFNSNKWPLLIDPQGQANKWLKNVEKGN-LSVVKL--TDATLLRTLERAI--RTGTAVLLENIQETIDSSLEPVLLKSY 999 (1650)
Q Consensus 925 i~~~~~r~PLlIDPq~qa~~wik~~~~~~-l~v~~~--~~~~~~~~le~ai--~~G~~vlie~v~e~~dp~l~p~L~~~~ 999 (1650)
++....|.+.+-+=-.+-..+.....+.. ..|++. -++.-...|..++ .+|++|-++. .+||.|-
T Consensus 173 ~lv~~~R~~~l~~i~~~f~~l~~~~~~~~~a~VtSA~pLs~~q~~~L~~~L~k~~g~~V~l~~---~VDpsLI------- 242 (271)
T PRK13430 173 QAVGRPRGRSIEEGLDELSNLAAARRGRSVATVTTAVPLSDEQKQRLAAALSRIYGRPVHLNS---EVDPSVL------- 242 (271)
T ss_pred HHHhCCChhhHHHHHHHHHHHHHHHcCeeEEEEEecCCCCHHHHHHHHHHHHHHHCCceEEEe---eECcccc-------
Confidence 22333454444332222222222222211 445443 2445556666655 7899987764 6788654
Q ss_pred HhhcCeEEEEecCeeeeec
Q psy4724 1000 YKIQNQLIMTLNNKEIEYN 1018 (1650)
Q Consensus 1000 ~~~~~~~~i~ig~~~i~~~ 1018 (1650)
|...|++||+.||++
T Consensus 243 ----GGivI~vGd~viD~S 257 (271)
T PRK13430 243 ----GGMRVQVGDEVIDGS 257 (271)
T ss_pred ----CcEEEEECCEEEehh
Confidence 778899999999975
No 219
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=66.91 E-value=3.8 Score=36.08 Aligned_cols=25 Identities=20% Similarity=0.422 Sum_probs=19.7
Q ss_pred CCC-ceEEEecCCchhhhHHHHHHHh
Q psy4724 74 PKG-HAMLITIGGSGAAEVTKLATFM 98 (1650)
Q Consensus 74 p~G-~alLvGvgGSGrqSLtrLAafi 98 (1650)
|+| ..+++|..||||.||----.++
T Consensus 21 ~~g~~tli~G~nGsGKSTllDAi~~~ 46 (62)
T PF13555_consen 21 PRGDVTLITGPNGSGKSTLLDAIQTV 46 (62)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 456 8999999999999996554443
No 220
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=66.88 E-value=5.1 Score=42.26 Aligned_cols=30 Identities=20% Similarity=0.320 Sum_probs=23.8
Q ss_pred ceEEEecCCchhhhHHHHHHHhcCCceEEE
Q psy4724 77 HAMLITIGGSGAAEVTKLATFMNEYVLFEI 106 (1650)
Q Consensus 77 ~alLvGvgGSGrqSLtrLAafi~~~~~fqI 106 (1650)
+.+|+|+.||||.++++..|--.|+..+..
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~ 30 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDL 30 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEEc
Confidence 468999999999999987775557766554
No 221
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=66.84 E-value=13 Score=40.05 Aligned_cols=32 Identities=16% Similarity=0.216 Sum_probs=27.0
Q ss_pred CceEEEecCCchhhhHHHHHHHhcCCceEEEE
Q psy4724 76 GHAMLITIGGSGAAEVTKLATFMNEYVLFEIE 107 (1650)
Q Consensus 76 G~alLvGvgGSGrqSLtrLAafi~~~~~fqIe 107 (1650)
.+.+|+|..||||.|+++.-|--.|+.++...
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D 34 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRFVDTD 34 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEcc
Confidence 36789999999999999998877788777654
No 222
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=66.69 E-value=6.8 Score=45.73 Aligned_cols=24 Identities=17% Similarity=0.246 Sum_probs=21.5
Q ss_pred CCceEEEecCCchhhhHHHHHHHh
Q psy4724 75 KGHAMLITIGGSGAAEVTKLATFM 98 (1650)
Q Consensus 75 ~G~alLvGvgGSGrqSLtrLAafi 98 (1650)
.+|+||.|..|+||.+++|+.|-.
T Consensus 42 ~~~vll~GppGtGKTtlA~~ia~~ 65 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTVARILGKL 65 (261)
T ss_pred cceEEEEcCCCCCHHHHHHHHHHH
Confidence 479999999999999999998754
No 223
>PRK02224 chromosome segregation protein; Provisional
Probab=66.43 E-value=38 Score=47.14 Aligned_cols=28 Identities=21% Similarity=0.419 Sum_probs=22.2
Q ss_pred hcCCCCceEEEecCCchhhhHHHHHHHh
Q psy4724 71 LQQPKGHAMLITIGGSGAAEVTKLATFM 98 (1650)
Q Consensus 71 l~~p~G~alLvGvgGSGrqSLtrLAafi 98 (1650)
+..+.|--+++|..||||.||-.--.|.
T Consensus 19 ~~f~~g~~~i~G~Ng~GKStil~ai~~~ 46 (880)
T PRK02224 19 LRLEDGVTVIHGVNGSGKSSLLEACFFA 46 (880)
T ss_pred EecCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3556798999999999999996655553
No 224
>KOG0994|consensus
Probab=66.42 E-value=79 Score=42.70 Aligned_cols=80 Identities=20% Similarity=0.180 Sum_probs=55.7
Q ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhch
Q psy4724 751 VIKIVGPKKAKLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKLERAEKLIGGLGG 830 (1650)
Q Consensus 751 v~~~v~P~~~~l~~~e~~l~~~~~~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~~Li~~L~~ 830 (1650)
+...+.-.++.|.+++++...++..+...-+++.+++.++++|+.++.....+....++.+..++.+-.+|+..+.-|..
T Consensus 1589 a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~qns~~A~~a~~~a~sa~~~A~~a~q~~~~lq~ 1668 (1758)
T KOG0994|consen 1589 ADRDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEELKHKAAQNSAEAKQAEKTAGSAKEQALSAEQGLEILQK 1668 (1758)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445566777777777777777777778888888888888888777777777777777766666666666554433
No 225
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=66.29 E-value=5.8 Score=48.37 Aligned_cols=46 Identities=11% Similarity=0.147 Sum_probs=32.4
Q ss_pred HHHhcCCCCceEEEecCCchhhhHHHH-HHHhc-----CCceEEEEEcccCC
Q psy4724 68 CRILQQPKGHAMLITIGGSGAAEVTKL-ATFMN-----EYVLFEIEILKTYG 113 (1650)
Q Consensus 68 ~Ril~~p~G~alLvGvgGSGrqSLtrL-Aafi~-----~~~~fqIeitk~Yg 113 (1650)
...+..|+|..+++|+.||||.|+.+. +.++. +..++.+|-...|.
T Consensus 127 ~~~~~~~~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE~~ 178 (358)
T TIGR02524 127 IDAIAPQEGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIEFV 178 (358)
T ss_pred HHHHhccCCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCceEe
Confidence 344567899999999999999988654 34442 23577776655554
No 226
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=65.82 E-value=21 Score=46.29 Aligned_cols=91 Identities=13% Similarity=0.155 Sum_probs=55.1
Q ss_pred HHHHhcCC-CCc-eEEEecCCchhhhHHHHHHHhcC------------------------CceEEEEEcccCCcchhHHH
Q psy4724 67 LCRILQQP-KGH-AMLITIGGSGAAEVTKLATFMNE------------------------YVLFEIEILKTYGLTDWRDD 120 (1650)
Q Consensus 67 I~Ril~~p-~G~-alLvGvgGSGrqSLtrLAafi~~------------------------~~~fqIeitk~Yg~~~f~eD 120 (1650)
+.+.++.. -+| .|+.|..|.||.|++|.-|---. .++..+.-..+.+..++|+-
T Consensus 28 L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~~~~~dv~~idgas~~~vddIr~l 107 (563)
T PRK06647 28 LKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDNDNSLDVIEIDGASNTSVQDVRQI 107 (563)
T ss_pred HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHcCCCCCeEEecCcccCCHHHHHHH
Confidence 44444332 346 56889999999999987654322 23444443334566666653
Q ss_pred HHHHHHHhccCCCCCEEEEEecCCcCchhhHHHHHHHHhhhh
Q psy4724 121 LCRLMKKSGGKDAKPMTFLFSDTQIQNEVFVEHINMLLNTAR 162 (1650)
Q Consensus 121 Lk~l~~~~g~~~~k~~vFl~tD~qI~~E~fLedIN~lL~tge 162 (1650)
...+.. .. ..++.-|+++.|.|-... +..|.||.+-|
T Consensus 108 ~e~~~~-~p-~~~~~KVvIIDEa~~Ls~---~a~naLLK~LE 144 (563)
T PRK06647 108 KEEIMF-PP-ASSRYRVYIIDEVHMLSN---SAFNALLKTIE 144 (563)
T ss_pred HHHHHh-ch-hcCCCEEEEEEChhhcCH---HHHHHHHHhhc
Confidence 333333 22 245667888998876544 35788888755
No 227
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=65.76 E-value=54 Score=47.20 Aligned_cols=17 Identities=6% Similarity=0.136 Sum_probs=10.4
Q ss_pred CcccccCchhHHHHHHH
Q psy4724 931 KWPLLIDPQGQANKWLK 947 (1650)
Q Consensus 931 r~PLlIDPq~qa~~wik 947 (1650)
...+++|-...|..+|.
T Consensus 549 l~~ivv~~~~~a~~~i~ 565 (1164)
T TIGR02169 549 LNNVVVEDDAVAKEAIE 565 (1164)
T ss_pred hCCEEECCHHHHHHHHH
Confidence 45677877666555443
No 228
>KOG0996|consensus
Probab=65.60 E-value=63 Score=43.96 Aligned_cols=101 Identities=15% Similarity=0.189 Sum_probs=0.0
Q ss_pred HHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy4724 749 DRVIKIVGPKKAKLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKLERAEKLIGGL 828 (1650)
Q Consensus 749 ~~v~~~v~P~~~~l~~~e~~l~~~~~~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~~Li~~L 828 (1650)
...-++-++.+++....++++.....++.+.+.+++..+..+.-|....+......+.++..+...+..+..-...+..+
T Consensus 468 ~~l~~~t~~~~~e~~~~ekel~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~ 547 (1293)
T KOG0996|consen 468 DSLKQETEGIREEIEKLEKELMPLLKQVNEARSELDVAESELDILLSRHETGLKKVEELKGKLLASSESLKEKKTELDDL 547 (1293)
T ss_pred HHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred chhhccHHHHHHHHHHHHhhc
Q psy4724 829 GGEKTRWSEASANLSKALVNC 849 (1650)
Q Consensus 829 ~~E~~rW~~~~~~~~~~~~~l 849 (1650)
..+-.+|+..+.+....+..+
T Consensus 548 k~~l~~~k~e~~~~~k~l~~~ 568 (1293)
T KOG0996|consen 548 KEELPSLKQELKEKEKELPKL 568 (1293)
T ss_pred HHhhhhHHHHHHHHHHhHHHH
No 229
>PRK06217 hypothetical protein; Validated
Probab=65.59 E-value=5.5 Score=43.73 Aligned_cols=29 Identities=10% Similarity=0.101 Sum_probs=22.6
Q ss_pred ceEEEecCCchhhhHHHHHHHhcCCceEE
Q psy4724 77 HAMLITIGGSGAAEVTKLATFMNEYVLFE 105 (1650)
Q Consensus 77 ~alLvGvgGSGrqSLtrLAafi~~~~~fq 105 (1650)
+.+++|.+||||.||++--+-..++.++.
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~ 31 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLD 31 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEE
Confidence 47899999999999998666555665443
No 230
>KOG2355|consensus
Probab=65.55 E-value=5.6 Score=43.21 Aligned_cols=43 Identities=21% Similarity=0.452 Sum_probs=31.5
Q ss_pred hcCCCC-ceEEEecCCchhhhHHHHHH--HhcCCceEEEEEcccCCcchhH
Q psy4724 71 LQQPKG-HAMLITIGGSGAAEVTKLAT--FMNEYVLFEIEILKTYGLTDWR 118 (1650)
Q Consensus 71 l~~p~G-~alLvGvgGSGrqSLtrLAa--fi~~~~~fqIeitk~Yg~~~f~ 118 (1650)
|..|-| .+||||..|+||.+|.++-+ ||++-.+.++ -|.+-|+
T Consensus 35 ldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~V-----lgrsaFh 80 (291)
T KOG2355|consen 35 LDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQV-----LGRSAFH 80 (291)
T ss_pred eccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEE-----cCcCccc
Confidence 356755 89999999999999999865 6666655554 2455555
No 231
>PHA02562 46 endonuclease subunit; Provisional
Probab=65.55 E-value=53 Score=43.02 Aligned_cols=85 Identities=12% Similarity=0.153 Sum_probs=58.5
Q ss_pred HhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhh
Q psy4724 753 KIVGPKKAKLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKLERAEKLIGGLGGEK 832 (1650)
Q Consensus 753 ~~v~P~~~~l~~~e~~l~~~~~~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~~Li~~L~~E~ 832 (1650)
..++..+.+++++...+.+.+..+...+..+..+..+...++.+.+....+...++.++..+..++..+..-+..+..|.
T Consensus 323 ~~~~~~~~~~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~~ke~ 402 (562)
T PHA02562 323 DELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKEK 402 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445566666666666666666666666666666667777777766677777777777778888888888888887
Q ss_pred ccHHH
Q psy4724 833 TRWSE 837 (1650)
Q Consensus 833 ~rW~~ 837 (1650)
.+|..
T Consensus 403 ~~~~~ 407 (562)
T PHA02562 403 YHRGI 407 (562)
T ss_pred HHHHH
Confidence 77754
No 232
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=65.47 E-value=99 Score=44.91 Aligned_cols=114 Identities=17% Similarity=0.143 Sum_probs=84.7
Q ss_pred chhhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHH
Q psy4724 740 FQVLAMEVYDRVIKIVGPKKAKLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQ----IELCK 815 (1650)
Q Consensus 740 ~Wv~A~~~Y~~v~~~v~P~~~~l~~~e~~l~~~~~~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~----~~~~~ 815 (1650)
.+..++..|......+.+...++..+...+..+..+++..+..+...++.++.++.+...+..+...++.. ++.+.
T Consensus 848 ~~~~aL~~y~~~l~~l~~~~~~L~~A~~~~~~a~~~le~ae~~l~~~~~e~~~~~~e~~~a~~~l~~l~e~l~~~~eel~ 927 (1353)
T TIGR02680 848 AVGLALKRFGDHLHTLEVAVRELRHAATRAAEQRARAARAESDAREAAEDAAEARAEAEEASLRLRTLEESVGAMVDEIR 927 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888888888888888888888888888888888888777777777777777777777777776666554 45566
Q ss_pred HHHHHHHHHHhhhchhhccHHHHHHHHHHHHhhchhHH
Q psy4724 816 QKLERAEKLIGGLGGEKTRWSEASANLSKALVNCIGDI 853 (1650)
Q Consensus 816 ~rl~ra~~Li~~L~~E~~rW~~~~~~~~~~~~~l~Gd~ 853 (1650)
.+++.+..-+..+..+..+..............+-+..
T Consensus 928 a~L~e~r~rL~~l~~el~~~~~~~~~a~~~~~~a~~~~ 965 (1353)
T TIGR02680 928 ARLAETRAALASGGRELPRLAEALATAEEARGRAEEKR 965 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777777777777777777777777766666665555
No 233
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=65.44 E-value=57 Score=47.02 Aligned_cols=8 Identities=13% Similarity=0.106 Sum_probs=3.1
Q ss_pred hhHHHHHH
Q psy4724 962 ATLLRTLE 969 (1650)
Q Consensus 962 ~~~~~~le 969 (1650)
+.|...++
T Consensus 533 ~~~~~a~~ 540 (1179)
T TIGR02168 533 EGYEAAIE 540 (1179)
T ss_pred hhHHHHHH
Confidence 33433333
No 234
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=65.31 E-value=29 Score=37.23 Aligned_cols=97 Identities=21% Similarity=0.224 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHhcCCCCce-EEEecCCchhhhHHH-HHHHhcC----------------------CceEEEEEcc---c
Q psy4724 59 YIIQHISRLCRILQQPKGHA-MLITIGGSGAAEVTK-LATFMNE----------------------YVLFEIEILK---T 111 (1650)
Q Consensus 59 ~ai~Hv~rI~Ril~~p~G~a-lLvGvgGSGrqSLtr-LAafi~~----------------------~~~fqIeitk---~ 111 (1650)
.+++++.++.+- .--+|+ |+.|..|+||.++++ +|..+.+ .+++.+.... +
T Consensus 4 ~~~~~L~~~~~~--~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~~ 81 (162)
T PF13177_consen 4 EIIELLKNLIKS--GRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKKS 81 (162)
T ss_dssp HHHHHHHHHHHC--TC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSSS
T ss_pred HHHHHHHHHHHc--CCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccch
Confidence 344444444332 223686 899999999999976 4444432 2456665553 3
Q ss_pred CCcchhHHHHHHHHHHhccCCCCCEEEEEecCCcCchhhHHHHHHHHhhhh
Q psy4724 112 YGLTDWRDDLCRLMKKSGGKDAKPMTFLFSDTQIQNEVFVEHINMLLNTAR 162 (1650)
Q Consensus 112 Yg~~~f~eDLk~l~~~~g~~~~k~~vFl~tD~qI~~E~fLedIN~lL~tge 162 (1650)
+++.+.|+ +..-+.... ..++.-|++|.|.+=..+ +--|.||-|=|
T Consensus 82 i~i~~ir~-i~~~~~~~~-~~~~~KviiI~~ad~l~~---~a~NaLLK~LE 127 (162)
T PF13177_consen 82 IKIDQIRE-IIEFLSLSP-SEGKYKVIIIDEADKLTE---EAQNALLKTLE 127 (162)
T ss_dssp BSHHHHHH-HHHHCTSS--TTSSSEEEEEETGGGS-H---HHHHHHHHHHH
T ss_pred hhHHHHHH-HHHHHHHHH-hcCCceEEEeehHhhhhH---HHHHHHHHHhc
Confidence 66666663 333333333 356788999999986433 44588998855
No 235
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=65.23 E-value=25 Score=42.54 Aligned_cols=103 Identities=7% Similarity=0.095 Sum_probs=62.9
Q ss_pred eeehHHHHHHHHHHHHHhcCCCCceEEEecCCchhhhHHHHHHHhcC---CceEEEEEcccCCcchhHHHHH--------
Q psy4724 54 IVTFLYIIQHISRLCRILQQPKGHAMLITIGGSGAAEVTKLATFMNE---YVLFEIEILKTYGLTDWRDDLC-------- 122 (1650)
Q Consensus 54 lVlF~~ai~Hv~rI~Ril~~p~G~alLvGvgGSGrqSLtrLAafi~~---~~~fqIeitk~Yg~~~f~eDLk-------- 122 (1650)
|+=-..+|.++.+-.+-+..-.+++||+|-.||||..++|..-+.+. --++.|... .+....+..++-
T Consensus 8 liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~-~~~~~~~~~~lfg~~~~~~~ 86 (326)
T PRK11608 8 LLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA-ALNENLLDSELFGHEAGAFT 86 (326)
T ss_pred cEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCC-CCCHHHHHHHHccccccccC
Confidence 55556778887777666667789999999999999999997766654 234444433 444333333330
Q ss_pred -------HHHHHhccCCCCCEEEEEecCCcCchhhHHHHHHHHhhhh
Q psy4724 123 -------RLMKKSGGKDAKPMTFLFSDTQIQNEVFVEHINMLLNTAR 162 (1650)
Q Consensus 123 -------~l~~~~g~~~~k~~vFl~tD~qI~~E~fLedIN~lL~tge 162 (1650)
..+..+. + -++++.|-+-.....-+.+-.+|.+|.
T Consensus 87 g~~~~~~g~l~~a~----g-GtL~l~~i~~L~~~~Q~~L~~~l~~~~ 128 (326)
T PRK11608 87 GAQKRHPGRFERAD----G-GTLFLDELATAPMLVQEKLLRVIEYGE 128 (326)
T ss_pred CcccccCCchhccC----C-CeEEeCChhhCCHHHHHHHHHHHhcCc
Confidence 1122111 1 245566666555556666666666654
No 236
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=65.08 E-value=1.6 Score=45.83 Aligned_cols=46 Identities=26% Similarity=0.323 Sum_probs=32.1
Q ss_pred ceEEEecCCchhhhHHHHHHHhc-CCc-----eEEEEEcccCCcchhHHHHH
Q psy4724 77 HAMLITIGGSGAAEVTKLATFMN-EYV-----LFEIEILKTYGLTDWRDDLC 122 (1650)
Q Consensus 77 ~alLvGvgGSGrqSLtrLAafi~-~~~-----~fqIeitk~Yg~~~f~eDLk 122 (1650)
-..++||.|+||.++++.|.-.. ++. .+-.++.+.-|+.+=|++|+
T Consensus 6 vvvitGVpGvGKTTVl~~~~~~l~~~~ivNyG~~Mle~A~k~glve~rD~~R 57 (189)
T COG2019 6 VVVITGVPGVGKTTVLKIALKELVKHKIVNYGDLMLEIAKKKGLVEHRDEMR 57 (189)
T ss_pred EEEEEcCCCCChHHHHHHHHHHHhhceeeeHhHHHHHHHHHhCCcccHHHHh
Confidence 35789999999999999998776 322 22334555556666677665
No 237
>PRK03918 chromosome segregation protein; Provisional
Probab=65.04 E-value=65 Score=44.83 Aligned_cols=28 Identities=18% Similarity=0.292 Sum_probs=21.9
Q ss_pred hcCCCCceEEEecCCchhhhHHHHHHHh
Q psy4724 71 LQQPKGHAMLITIGGSGAAEVTKLATFM 98 (1650)
Q Consensus 71 l~~p~G~alLvGvgGSGrqSLtrLAafi 98 (1650)
|..+.|-.+++|..||||.|+-.--+|.
T Consensus 19 i~f~~g~~~i~G~nG~GKStil~ai~~~ 46 (880)
T PRK03918 19 VEFDDGINLIIGQNGSGKSSILEAILVG 46 (880)
T ss_pred EecCCCcEEEEcCCCCCHHHHHHHHHHH
Confidence 4455687889999999999998755553
No 238
>PRK12377 putative replication protein; Provisional
Probab=64.65 E-value=34 Score=39.46 Aligned_cols=95 Identities=8% Similarity=0.020 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHhcCCCCceEEEecCCchhhhHHHHHHHhc---CCceEEEEEcccCCcchhHHHHHHHHHHhc----cC-
Q psy4724 60 IIQHISRLCRILQQPKGHAMLITIGGSGAAEVTKLATFMN---EYVLFEIEILKTYGLTDWRDDLCRLMKKSG----GK- 131 (1650)
Q Consensus 60 ai~Hv~rI~Ril~~p~G~alLvGvgGSGrqSLtrLAafi~---~~~~fqIeitk~Yg~~~f~eDLk~l~~~~g----~~- 131 (1650)
|+..+.++++-+....++.+|.|..|+||..|+...+.-. |+.+.-+ +.+++.++|+..+.... ..
T Consensus 86 a~~~a~~~a~~~~~~~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i------~~~~l~~~l~~~~~~~~~~~~~l~ 159 (248)
T PRK12377 86 ALSQAKSIADELMTGCTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVV------TVPDVMSRLHESYDNGQSGEKFLQ 159 (248)
T ss_pred HHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEE------EHHHHHHHHHHHHhccchHHHHHH
Confidence 3333444444444445789999999999999987755433 4544333 35677777765442110 00
Q ss_pred -CCCCEEEEEecC--CcCchhhHHHHHHHHhh
Q psy4724 132 -DAKPMTFLFSDT--QIQNEVFVEHINMLLNT 160 (1650)
Q Consensus 132 -~~k~~vFl~tD~--qI~~E~fLedIN~lL~t 160 (1650)
-.+.-++++.|= +-..+.-.+.+.++++.
T Consensus 160 ~l~~~dLLiIDDlg~~~~s~~~~~~l~~ii~~ 191 (248)
T PRK12377 160 ELCKVDLLVLDEIGIQRETKNEQVVLNQIIDR 191 (248)
T ss_pred HhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHH
Confidence 023345666665 22234445566777665
No 239
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=64.32 E-value=8.2 Score=50.27 Aligned_cols=53 Identities=15% Similarity=0.194 Sum_probs=40.2
Q ss_pred HHHHHHHHHhcCCCCceEEEecCCchhhhHH-HHHHHhcC--CceEEEEEcccCCc
Q psy4724 62 QHISRLCRILQQPKGHAMLITIGGSGAAEVT-KLATFMNE--YVLFEIEILKTYGL 114 (1650)
Q Consensus 62 ~Hv~rI~Ril~~p~G~alLvGvgGSGrqSLt-rLAafi~~--~~~fqIeitk~Yg~ 114 (1650)
+|+..+-+.+..|+|..|+.|..||||.|+- .+..++.. ..+.+||-..-|..
T Consensus 303 ~~~~~l~~~~~~~~Glilv~G~tGSGKTTtl~a~l~~~~~~~~~i~tiEdpvE~~~ 358 (564)
T TIGR02538 303 DQKALFLEAIHKPQGMVLVTGPTGSGKTVSLYTALNILNTEEVNISTAEDPVEINL 358 (564)
T ss_pred HHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHhhCCCCceEEEecCCceecC
Confidence 5677888999999999999999999999763 55566643 34667766655544
No 240
>PRK09087 hypothetical protein; Validated
Probab=64.27 E-value=18 Score=41.12 Aligned_cols=70 Identities=14% Similarity=0.135 Sum_probs=43.7
Q ss_pred ceEEEecCCchhhhHHHHHHHhcCCceEEEEEcccCCcchhHHHHHHHHHHhccCCCCCEEEEEecCCc---CchhhHHH
Q psy4724 77 HAMLITIGGSGAAEVTKLATFMNEYVLFEIEILKTYGLTDWRDDLCRLMKKSGGKDAKPMTFLFSDTQI---QNEVFVEH 153 (1650)
Q Consensus 77 ~alLvGvgGSGrqSLtrLAafi~~~~~fqIeitk~Yg~~~f~eDLk~l~~~~g~~~~k~~vFl~tD~qI---~~E~fLed 153 (1650)
...|+|..||||..|.++.+.-.+.. -| +..+|..++-. +. .+ -++++.|-|. .++.+..-
T Consensus 46 ~l~l~G~~GsGKThLl~~~~~~~~~~--~i------~~~~~~~~~~~----~~--~~--~~l~iDDi~~~~~~~~~lf~l 109 (226)
T PRK09087 46 VVVLAGPVGSGKTHLASIWREKSDAL--LI------HPNEIGSDAAN----AA--AE--GPVLIEDIDAGGFDETGLFHL 109 (226)
T ss_pred eEEEECCCCCCHHHHHHHHHHhcCCE--Ee------cHHHcchHHHH----hh--hc--CeEEEECCCCCCCCHHHHHHH
Confidence 38999999999999999877543322 11 22234443311 11 11 2667777664 34678888
Q ss_pred HHHHHhhhh
Q psy4724 154 INMLLNTAR 162 (1650)
Q Consensus 154 IN~lL~tge 162 (1650)
||.+...|.
T Consensus 110 ~n~~~~~g~ 118 (226)
T PRK09087 110 INSVRQAGT 118 (226)
T ss_pred HHHHHhCCC
Confidence 899887763
No 241
>PF11172 DUF2959: Protein of unknown function (DUF2959); InterPro: IPR021342 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=64.12 E-value=98 Score=33.94 Aligned_cols=94 Identities=19% Similarity=0.300 Sum_probs=61.7
Q ss_pred HHHHHHhcc-hHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4724 748 YDRVIKIVG-PKK----AKLAEAEADYAVQMEKLNSKRAQLATVL-GKLQALRDELAQKSKDKKELEDQIELCKQKLERA 821 (1650)
Q Consensus 748 Y~~v~~~v~-P~~----~~l~~~e~~l~~~~~~L~~~~~~l~~~~-~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra 821 (1650)
|+.....|. +|| .+++.+...+.+++++....-+++..+- -.=..|+..|+....+.+..+...+....|+...
T Consensus 11 YY~amEkvG~hKRdilvdrVe~Ardsq~eaqeQF~sALe~f~sl~~~~ggdLe~~Y~~ln~~ye~s~~~A~~V~~RI~~v 90 (201)
T PF11172_consen 11 YYSAMEKVGVHKRDILVDRVEDARDSQQEAQEQFKSALEQFKSLVNFDGGDLEDKYNALNDEYESSEDAAEEVSDRIDAV 90 (201)
T ss_pred HHHHHHHhCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555554 444 4666666666666666655444443321 1123677788888888888888888888888888
Q ss_pred HHHHhhhchhhccHHHHHHHHHH
Q psy4724 822 EKLIGGLGGEKTRWSEASANLSK 844 (1650)
Q Consensus 822 ~~Li~~L~~E~~rW~~~~~~~~~ 844 (1650)
+..-.+|=.| |+.++..+..
T Consensus 91 E~Va~ALF~E---We~EL~~Y~~ 110 (201)
T PF11172_consen 91 EDVADALFDE---WEQELDQYSN 110 (201)
T ss_pred HHHHHHHHHH---HHHHHHHHcC
Confidence 8877777554 9988876654
No 242
>PRK12704 phosphodiesterase; Provisional
Probab=63.74 E-value=1.4e+02 Score=38.60 Aligned_cols=74 Identities=23% Similarity=0.273 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhh
Q psy4724 759 KAKLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKLERAEKLIGGLGGEK 832 (1650)
Q Consensus 759 ~~~l~~~e~~l~~~~~~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~~Li~~L~~E~ 832 (1650)
+.++.+.|+.+...++.|......|..-++.|...+++++...++.++.+.+++.........-.=+.||+.|.
T Consensus 81 e~~L~qrE~rL~~Ree~Le~r~e~Lekke~eL~~re~~Le~re~eLe~~~~~~~~~~~~~~~~l~~~a~lt~~e 154 (520)
T PRK12704 81 RNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERISGLTAEE 154 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH
Confidence 44555555555555555555555555555555555555555555555555555554444444444455555544
No 243
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=63.36 E-value=29 Score=41.99 Aligned_cols=95 Identities=15% Similarity=0.241 Sum_probs=66.3
Q ss_pred HHHHHHHHhcCCC-CceE-EEecCCchhhhHHHH-HHHh-cC----------------------CceEEEEEc---ccCC
Q psy4724 63 HISRLCRILQQPK-GHAM-LITIGGSGAAEVTKL-ATFM-NE----------------------YVLFEIEIL---KTYG 113 (1650)
Q Consensus 63 Hv~rI~Ril~~p~-G~al-LvGvgGSGrqSLtrL-Aafi-~~----------------------~~~fqIeit---k~Yg 113 (1650)
+..++.+.+++-| +||+ +.|..|+||.++++- |.++ |. =+++.|+.. ...+
T Consensus 10 ~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~ 89 (334)
T PRK07993 10 DYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSLG 89 (334)
T ss_pred HHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccCC
Confidence 4556777776644 6898 679999999999764 6565 21 135556543 3588
Q ss_pred cchhHHHHHHHHHHhccCCCCCEEEEEecCCcCchhhHHHHHHHHhhhh
Q psy4724 114 LTDWRDDLCRLMKKSGGKDAKPMTFLFSDTQIQNEVFVEHINMLLNTAR 162 (1650)
Q Consensus 114 ~~~f~eDLk~l~~~~g~~~~k~~vFl~tD~qI~~E~fLedIN~lL~tge 162 (1650)
+.+-|+=.+.+..+. ..|+.-|+++.+++=.++ +--|.||-|=|
T Consensus 90 idqiR~l~~~~~~~~--~~g~~kV~iI~~ae~m~~---~AaNaLLKtLE 133 (334)
T PRK07993 90 VDAVREVTEKLYEHA--RLGGAKVVWLPDAALLTD---AAANALLKTLE 133 (334)
T ss_pred HHHHHHHHHHHhhcc--ccCCceEEEEcchHhhCH---HHHHHHHHHhc
Confidence 889888665666655 367788999999886443 45699998854
No 244
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=63.30 E-value=4.8 Score=43.63 Aligned_cols=28 Identities=25% Similarity=0.312 Sum_probs=21.8
Q ss_pred CCCCceEEEecCCchhhhHHHHHHHhcC
Q psy4724 73 QPKGHAMLITIGGSGAAEVTKLATFMNE 100 (1650)
Q Consensus 73 ~p~G~alLvGvgGSGrqSLtrLAafi~~ 100 (1650)
.|.|+.||+|+.|+||.-|++.-|=+-.
T Consensus 1 ~p~~~~ll~GpsGvGKT~la~~la~~l~ 28 (171)
T PF07724_consen 1 RPKSNFLLAGPSGVGKTELAKALAELLF 28 (171)
T ss_dssp S-SEEEEEESSTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3899999999999999988776554433
No 245
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=63.21 E-value=29 Score=42.50 Aligned_cols=102 Identities=16% Similarity=0.163 Sum_probs=61.8
Q ss_pred eeehHHHHHHHHHHHHHhcCCCCce-EEEecCCchhhhHH-HHHHHhcC------------------C------------
Q psy4724 54 IVTFLYIIQHISRLCRILQQPKGHA-MLITIGGSGAAEVT-KLATFMNE------------------Y------------ 101 (1650)
Q Consensus 54 lVlF~~ai~Hv~rI~Ril~~p~G~a-lLvGvgGSGrqSLt-rLAafi~~------------------~------------ 101 (1650)
+|=-++|.+++.+..+- .--.|| |+.|+.|+||.+|+ ++|.++.. +
T Consensus 21 iiGq~~~~~~L~~~~~~--~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~~i~~~ 98 (365)
T PRK07471 21 LFGHAAAEAALLDAYRS--GRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVARRIAAG 98 (365)
T ss_pred ccChHHHHHHHHHHHHc--CCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHHHHHHcc
Confidence 44446666655543322 223674 58899999999998 57777621 1
Q ss_pred ---ceEEEEE---c------ccCCcchhHHHHHHHHHHhccCCCCCEEEEEecCCcCchhhHHHHHHHHhhhh
Q psy4724 102 ---VLFEIEI---L------KTYGLTDWRDDLCRLMKKSGGKDAKPMTFLFSDTQIQNEVFVEHINMLLNTAR 162 (1650)
Q Consensus 102 ---~~fqIei---t------k~Yg~~~f~eDLk~l~~~~g~~~~k~~vFl~tD~qI~~E~fLedIN~lL~tge 162 (1650)
+++.|+. . +.+++.+-|+ +...+.... ..+++.|+++.|.+=.+. +-.|.||-+=|
T Consensus 99 ~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~-l~~~~~~~~-~~~~~kVviIDead~m~~---~aanaLLK~LE 166 (365)
T PRK07471 99 AHGGLLTLERSWNEKGKRLRTVITVDEVRE-LISFFGLTA-AEGGWRVVIVDTADEMNA---NAANALLKVLE 166 (365)
T ss_pred CCCCeEEEecccccccccccccccHHHHHH-HHHHhCcCc-ccCCCEEEEEechHhcCH---HHHHHHHHHHh
Confidence 3455543 1 2355666554 334343344 467889999999876544 45588887744
No 246
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=63.03 E-value=31 Score=39.49 Aligned_cols=17 Identities=29% Similarity=0.499 Sum_probs=14.8
Q ss_pred ceEEEecCCchhhhHHH
Q psy4724 77 HAMLITIGGSGAAEVTK 93 (1650)
Q Consensus 77 ~alLvGvgGSGrqSLtr 93 (1650)
++.+||..||||.+|.+
T Consensus 15 r~viIG~sGSGKT~li~ 31 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIK 31 (241)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 68899999999999643
No 247
>KOG1962|consensus
Probab=63.00 E-value=72 Score=35.54 Aligned_cols=25 Identities=28% Similarity=0.292 Sum_probs=13.3
Q ss_pred HHHhhhchhhccHHHHHHHHHHHHh
Q psy4724 823 KLIGGLGGEKTRWSEASANLSKALV 847 (1650)
Q Consensus 823 ~Li~~L~~E~~rW~~~~~~~~~~~~ 847 (1650)
+=.+++..|..|=.+..+.++++..
T Consensus 186 Kq~e~~~~EydrLlee~~~Lq~~i~ 210 (216)
T KOG1962|consen 186 KQSEGLQDEYDRLLEEYSKLQEQIE 210 (216)
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHh
Confidence 3344555555565555555555543
No 248
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=62.77 E-value=75 Score=45.51 Aligned_cols=82 Identities=18% Similarity=0.335 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhccHHHHHHHHHHHHh
Q psy4724 768 DYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKLERAEKLIGGLGGEKTRWSEASANLSKALV 847 (1650)
Q Consensus 768 ~l~~~~~~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~~Li~~L~~E~~rW~~~~~~~~~~~~ 847 (1650)
.+...+.++...+..+..+++.+..++..++.....+..+...+...+..+..+..-+..|..+...|......+..++.
T Consensus 752 ~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ei~ 831 (1163)
T COG1196 752 ELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIE 831 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444555555555555555555666666665556666677777777777777788888888888877777777766
Q ss_pred hc
Q psy4724 848 NC 849 (1650)
Q Consensus 848 ~l 849 (1650)
.+
T Consensus 832 ~l 833 (1163)
T COG1196 832 EL 833 (1163)
T ss_pred HH
Confidence 55
No 249
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=62.62 E-value=1.3e+02 Score=40.08 Aligned_cols=24 Identities=8% Similarity=0.145 Sum_probs=20.2
Q ss_pred CceEEEecCCchhhhHHHHHHHhc
Q psy4724 76 GHAMLITIGGSGAAEVTKLATFMN 99 (1650)
Q Consensus 76 G~alLvGvgGSGrqSLtrLAafi~ 99 (1650)
|-.+++|..|+||.||.+.-.|.-
T Consensus 29 ~~~~i~G~Ng~GKttll~ai~~~L 52 (650)
T TIGR03185 29 PIILIGGLNGAGKTTLLDAIQLAL 52 (650)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 457889999999999998877754
No 250
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=62.56 E-value=45 Score=39.95 Aligned_cols=59 Identities=19% Similarity=0.260 Sum_probs=44.1
Q ss_pred HHHHHHcCCeEEEecccccccccchHHHhHHHHhhcCeEEEEecCeeeeecCCeeEEEEeC
Q psy4724 968 LERAIRTGTAVLLENIQETIDSSLEPVLLKSYYKIQNQLIMTLNNKEIEYNIKFRLYITTR 1028 (1650)
Q Consensus 968 le~ai~~G~~vlie~v~e~~dp~l~p~L~~~~~~~~~~~~i~ig~~~i~~~~~FrL~l~Tk 1028 (1650)
|-.|++.|..+++..+ +..+|.....|+.-+.. ++..+|-=++..|.-||+||++.|++
T Consensus 128 L~~A~~~g~illlDEi-n~a~p~~~~~L~~lLE~-~~~l~i~~~~~~i~~hp~FrviAT~N 186 (327)
T TIGR01650 128 LPWALQHNVALCFDEY-DAGRPDVMFVIQRVLEA-GGKLTLLDQNRVIRAHPAFRLFATAN 186 (327)
T ss_pred chhHHhCCeEEEechh-hccCHHHHHHHHHHhcc-CCeEEECCCceEecCCCCeEEEEeeC
Confidence 6678899999999998 57788776666544332 45555544578888999999999983
No 251
>KOG2573|consensus
Probab=62.50 E-value=2.5 Score=49.75 Aligned_cols=7 Identities=29% Similarity=0.496 Sum_probs=3.4
Q ss_pred HHHHHHh
Q psy4724 1387 LLKFNSD 1393 (1650)
Q Consensus 1387 l~~~a~~ 1393 (1650)
|..||+.
T Consensus 266 i~~fa~r 272 (498)
T KOG2573|consen 266 IRKFAER 272 (498)
T ss_pred HHHHHHH
Confidence 4555543
No 252
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=62.43 E-value=63 Score=36.86 Aligned_cols=122 Identities=19% Similarity=0.362 Sum_probs=68.8
Q ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4724 744 AMEVYDRVIKIVGPKKAKLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKLERAEK 823 (1650)
Q Consensus 744 A~~~Y~~v~~~v~P~~~~l~~~e~~l~~~~~~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~~ 823 (1650)
-+..|......|+-.-.+-..+...+..+...|+.++..+..+...-..-.+.++.+..+..+++..++.++.+.+...
T Consensus 112 ~L~ey~~~~~svk~~l~~R~~~~~~~~~a~~~l~kkk~~~~kl~~~~~~~~~k~~~~~~ei~~~~~~~~~~~~~~~~is- 190 (236)
T PF09325_consen 112 PLREYLRYIESVKEALNRRDKKLIEYQNAEKELQKKKAQLEKLKASGKNRQDKVEQAENEIEEAERRVEQAKDEFEEIS- 190 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 3444555555555544455555666667777777777666665554333345555555555666666666665555544
Q ss_pred HHhhhchhhccHHHHH-HHHHHHHhhchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhh
Q psy4724 824 LIGGLGGEKTRWSEAS-ANLSKALVNCIGDILICAGIITYLGAFTVDFRNDLIEQWKSLS 882 (1650)
Q Consensus 824 Li~~L~~E~~rW~~~~-~~~~~~~~~l~Gd~ll~aa~i~Y~G~f~~~~R~~l~~~w~~~~ 882 (1650)
..+..|..||.... .+++..+ ..|+.. --++-+++++.|...+
T Consensus 191 --~~~k~E~~rf~~~k~~d~k~~l-------------~~~~~~-~i~~~~~~~~~We~~~ 234 (236)
T PF09325_consen 191 --ENIKKELERFEKEKVKDFKSML-------------EEYAES-QIEYQKKMLEAWETFL 234 (236)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHH-------------HHHHHH-HHHHHHHHHHHHHhHc
Confidence 34557889998643 3333333 233322 2345567788887654
No 253
>PRK07261 topology modulation protein; Provisional
Probab=62.11 E-value=6.9 Score=42.43 Aligned_cols=25 Identities=16% Similarity=0.222 Sum_probs=18.9
Q ss_pred eEEEecCCchhhhHHHHHHHhcCCc
Q psy4724 78 AMLITIGGSGAAEVTKLATFMNEYV 102 (1650)
Q Consensus 78 alLvGvgGSGrqSLtrLAafi~~~~ 102 (1650)
.+++|.+||||.||++.-+-..++.
T Consensus 3 i~i~G~~GsGKSTla~~l~~~~~~~ 27 (171)
T PRK07261 3 IAIIGYSGSGKSTLARKLSQHYNCP 27 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCC
Confidence 6799999999999998654333443
No 254
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=61.77 E-value=1.4e+02 Score=35.77 Aligned_cols=91 Identities=15% Similarity=0.198 Sum_probs=43.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy4724 757 PKKAKLAEAEADYAVQMEKLNSKRAQLATVLG-------KLQALRDELAQKSKDKKELEDQIELCKQKLERAEKLIGGLG 829 (1650)
Q Consensus 757 P~~~~l~~~e~~l~~~~~~L~~~~~~l~~~~~-------~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~~Li~~L~ 829 (1650)
.+..++.-+++.+..+...............+ ++..+...-.....+.....+..+..+..|..+..+..++-
T Consensus 164 ~keLE~Ql~~AKl~q~~~~~~~e~~k~~~~~~~~l~~~~~~~~~~~~E~~Lr~QL~~Y~~Kf~efq~tL~kSNe~F~tfk 243 (309)
T PF09728_consen 164 QKELEVQLAEAKLEQQQEEAEQEKEKAKQEKEILLEEAAQVQTLKETEKELREQLNLYSEKFEEFQDTLNKSNEVFETFK 243 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 33444444444444444444444444444444 44444444444444444444455555555555555555555
Q ss_pred hhhccHHHHHHHHHHHHh
Q psy4724 830 GEKTRWSEASANLSKALV 847 (1650)
Q Consensus 830 ~E~~rW~~~~~~~~~~~~ 847 (1650)
.|.+++...+..++....
T Consensus 244 ~Emekm~Kk~kklEKE~~ 261 (309)
T PF09728_consen 244 KEMEKMSKKIKKLEKENQ 261 (309)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555555555554444443
No 255
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=61.60 E-value=5.9 Score=43.16 Aligned_cols=38 Identities=18% Similarity=0.205 Sum_probs=21.4
Q ss_pred cCCCCceEEEecCCchhhhHHH-HHHHhcCCc--eEEEEEc
Q psy4724 72 QQPKGHAMLITIGGSGAAEVTK-LATFMNEYV--LFEIEIL 109 (1650)
Q Consensus 72 ~~p~G~alLvGvgGSGrqSLtr-LAafi~~~~--~fqIeit 109 (1650)
....-+.+++|..|+||.+|.+ ++..+..-. +..+...
T Consensus 21 ~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~ 61 (185)
T PF13191_consen 21 SGSPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCD 61 (185)
T ss_dssp S-----EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEE
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEe
Confidence 4445679999999999999987 666665431 4444444
No 256
>PLN02165 adenylate isopentenyltransferase
Probab=61.51 E-value=14 Score=44.20 Aligned_cols=29 Identities=28% Similarity=0.354 Sum_probs=21.5
Q ss_pred HhcCCCC-ceEEEecCCchhhhHHH-HHHHh
Q psy4724 70 ILQQPKG-HAMLITIGGSGAAEVTK-LATFM 98 (1650)
Q Consensus 70 il~~p~G-~alLvGvgGSGrqSLtr-LAafi 98 (1650)
.+..+.| ...|+|+.||||.+|+. ||..+
T Consensus 37 ~~~~~~g~iivIiGPTGSGKStLA~~LA~~l 67 (334)
T PLN02165 37 MEQNCKDKVVVIMGATGSGKSRLSVDLATRF 67 (334)
T ss_pred cccCCCCCEEEEECCCCCcHHHHHHHHHHHc
Confidence 3355555 58899999999999987 44443
No 257
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=61.49 E-value=1.6e+02 Score=32.46 Aligned_cols=23 Identities=26% Similarity=0.478 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy4724 785 TVLGKLQALRDELAQKSKDKKEL 807 (1650)
Q Consensus 785 ~~~~~l~~l~~~~~~~~~e~~~l 807 (1650)
..++++..+...+.+..++..++
T Consensus 127 ~~~~~l~~l~~~~~~~~~e~~~l 149 (191)
T PF04156_consen 127 SVEERLDSLDESIKELEKEIREL 149 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 258
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=61.17 E-value=6.6 Score=44.27 Aligned_cols=52 Identities=15% Similarity=0.093 Sum_probs=35.9
Q ss_pred CCCCceEEEecCCchhhhHHHHHHHhc-CCceEEEEEcccCCcchhHHHHHHH
Q psy4724 73 QPKGHAMLITIGGSGAAEVTKLATFMN-EYVLFEIEILKTYGLTDWRDDLCRL 124 (1650)
Q Consensus 73 ~p~G~alLvGvgGSGrqSLtrLAafi~-~~~~fqIeitk~Yg~~~f~eDLk~l 124 (1650)
.|+-|-.++|..||||.||.++++==. ...=.-.-+.+.||.-++..||++-
T Consensus 55 ~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~ 107 (257)
T COG1119 55 NPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKR 107 (257)
T ss_pred cCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHH
Confidence 478899999999999999999876321 1011112345678888887778653
No 259
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=60.98 E-value=1e+02 Score=29.54 Aligned_cols=57 Identities=19% Similarity=0.246 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy4724 773 MEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKLERAEKLIGGLG 829 (1650)
Q Consensus 773 ~~~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~~Li~~L~ 829 (1650)
.+.|...++.+++--++-+.-.+.+++..+....+.+++......+..+.+|+..|.
T Consensus 7 T~~L~rt~~~m~~ev~~s~~t~~~L~~Ss~~L~~~~~e~~~~~~~l~~s~~ll~~l~ 63 (92)
T PF03908_consen 7 TESLRRTRQMMAQEVERSELTLQTLEESSATLRSTNDEYDGQSSLLKKSRKLLKKLE 63 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555666666677777788888888889999999999999884
No 260
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=60.95 E-value=33 Score=40.51 Aligned_cols=91 Identities=25% Similarity=0.285 Sum_probs=58.1
Q ss_pred HHHHHhcCCC-CceEEEecCCchhhhHH-HHHHHhc-C----------------------CceEEEEEc-ccCCcchhHH
Q psy4724 66 RLCRILQQPK-GHAMLITIGGSGAAEVT-KLATFMN-E----------------------YVLFEIEIL-KTYGLTDWRD 119 (1650)
Q Consensus 66 rI~Ril~~p~-G~alLvGvgGSGrqSLt-rLAafi~-~----------------------~~~fqIeit-k~Yg~~~f~e 119 (1650)
++.+.+++.| +||+|. .||.||.+++ .+|..+. + -+++.|+.. +.+++.+-|+
T Consensus 13 ~L~~~~~~~rl~hAyLf-~G~~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~~~I~idqIR~ 91 (290)
T PRK07276 13 RFQTILEQDRLNHAYLF-SGDFASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQVIKTDTIRE 91 (290)
T ss_pred HHHHHHHcCCcceeeee-eCCccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCCCcCCHHHHHH
Confidence 4445555554 688666 5689998877 4555542 1 135555443 3467777776
Q ss_pred HHHHHHHHhccCCCCCEEEEEecCCcCchhhHHHHHHHHhhhh
Q psy4724 120 DLCRLMKKSGGKDAKPMTFLFSDTQIQNEVFVEHINMLLNTAR 162 (1650)
Q Consensus 120 DLk~l~~~~g~~~~k~~vFl~tD~qI~~E~fLedIN~lL~tge 162 (1650)
=++.+ .... ..++.-||++.|.+=..+ +--|.||-|=|
T Consensus 92 l~~~~-~~~p-~~~~~kV~II~~ad~m~~---~AaNaLLKtLE 129 (290)
T PRK07276 92 LVKNF-SQSG-YEGKQQVFIIKDADKMHV---NAANSLLKVIE 129 (290)
T ss_pred HHHHH-hhCc-ccCCcEEEEeehhhhcCH---HHHHHHHHHhc
Confidence 44444 4455 577888999999986543 45699998854
No 261
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=60.78 E-value=12 Score=39.75 Aligned_cols=49 Identities=18% Similarity=0.257 Sum_probs=39.8
Q ss_pred CCCCceEEEecCCchhhhHHHHHHHhc----CCceEEEEEcccCCcchhHHHH
Q psy4724 73 QPKGHAMLITIGGSGAAEVTKLATFMN----EYVLFEIEILKTYGLTDWRDDL 121 (1650)
Q Consensus 73 ~p~G~alLvGvgGSGrqSLtrLAafi~----~~~~fqIeitk~Yg~~~f~eDL 121 (1650)
.|+-..++.|++|+||.+|-|.-|-+- |.-+|.=+.-..|+...||..+
T Consensus 27 ~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~V 79 (223)
T COG4619 27 RAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQV 79 (223)
T ss_pred cCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHH
Confidence 356678999999999999988766653 5567777777889999999877
No 262
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=60.74 E-value=57 Score=36.11 Aligned_cols=81 Identities=22% Similarity=0.261 Sum_probs=58.8
Q ss_pred HHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy4724 750 RVIKIVGPKKAKLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELA-QKSKDKKELEDQIELCKQKLERAEKLIGGL 828 (1650)
Q Consensus 750 ~v~~~v~P~~~~l~~~e~~l~~~~~~L~~~~~~l~~~~~~l~~l~~~~~-~~~~e~~~l~~~~~~~~~rl~ra~~Li~~L 828 (1650)
....+|.-++.++...+.....+...+..+..++..+.+.+..|+.-.+ ....+.++|..++..++.+++.++.-|..|
T Consensus 65 ~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~eReeL~~kL~~~~~~l~~~~~ki~~L 144 (194)
T PF15619_consen 65 RHNEEVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELKHLKKLSEDKNLAEREELQRKLSQLEQKLQEKEKKIQEL 144 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777888888888888888888888888887777777766444 344567777777777777777777776666
Q ss_pred ch
Q psy4724 829 GG 830 (1650)
Q Consensus 829 ~~ 830 (1650)
..
T Consensus 145 ek 146 (194)
T PF15619_consen 145 EK 146 (194)
T ss_pred HH
Confidence 43
No 263
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=60.66 E-value=7.4 Score=47.28 Aligned_cols=45 Identities=22% Similarity=0.245 Sum_probs=32.2
Q ss_pred ceeehHHHHHHHH----HHHHHhcCCCCceEEEecCCchhh-hHHHHHHHhc
Q psy4724 53 DIVTFLYIIQHIS----RLCRILQQPKGHAMLITIGGSGAA-EVTKLATFMN 99 (1650)
Q Consensus 53 ~lVlF~~ai~Hv~----rI~Ril~~p~G~alLvGvgGSGrq-SLtrLAafi~ 99 (1650)
++..|..+..-+. ... |. -|.|..+|||+.|.||. ||++|||+-.
T Consensus 179 ~~~~~~~~l~~~~~~~~~~~-~~-~~~~vi~LVGPTGVGKTTTlAKLAar~~ 228 (407)
T COG1419 179 DLRYFSEKLRKLLLSLIENL-IV-EQKRVIALVGPTGVGKTTTLAKLAARYV 228 (407)
T ss_pred hhhhHHHHHHHHHHhhcccc-cc-ccCcEEEEECCCCCcHHHHHHHHHHHHH
Confidence 4666666654432 223 32 35999999999999996 6899999864
No 264
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=60.57 E-value=1.1e+02 Score=38.90 Aligned_cols=32 Identities=9% Similarity=0.213 Sum_probs=16.6
Q ss_pred HhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4724 1064 AKEKPDLETKKNELIIESANNKKILKETEDKI 1095 (1650)
Q Consensus 1064 ~~e~peLe~~~~~l~~~~~~~k~~L~~lEd~l 1095 (1650)
+..+-.....|+.|.......+.++.+|..++
T Consensus 349 ke~~~q~~qEk~~l~~~~e~~k~~ie~L~~el 380 (546)
T PF07888_consen 349 KEGRSQWAQEKQALQHSAEADKDEIEKLSREL 380 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 34445555556655554444445555555444
No 265
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=60.51 E-value=12 Score=44.73 Aligned_cols=67 Identities=16% Similarity=0.206 Sum_probs=44.7
Q ss_pred ceEEEecCCchhhhHHH-HHHHhcC----Cc---------------------------eEEEEEcccCCcchhHHHHHHH
Q psy4724 77 HAMLITIGGSGAAEVTK-LATFMNE----YV---------------------------LFEIEILKTYGLTDWRDDLCRL 124 (1650)
Q Consensus 77 ~alLvGvgGSGrqSLtr-LAafi~~----~~---------------------------~fqIeitk~Yg~~~f~eDLk~l 124 (1650)
-.+++|+.||||.+|+. ||....+ .+ +-.++....|+..+|.++.++.
T Consensus 6 ~i~i~GptgsGKt~la~~la~~~~~~iis~Ds~Qvy~~l~i~Takp~~~E~~gv~hhlid~~~~~~~~s~~~f~~~a~~~ 85 (307)
T PRK00091 6 VIVIVGPTASGKTALAIELAKRLNGEIISADSMQVYRGMDIGTAKPTAEERAGVPHHLIDILDPTESYSVADFQRDALAA 85 (307)
T ss_pred EEEEECCCCcCHHHHHHHHHHhCCCcEEeccccceeecccccCCCCCHHHHcCccEEeecccChhhcccHHHHHHHHHHH
Confidence 35799999999999976 6666533 11 1122344568899999999888
Q ss_pred HHHhccCCCCCEEEEEecCCc
Q psy4724 125 MKKSGGKDAKPMTFLFSDTQI 145 (1650)
Q Consensus 125 ~~~~g~~~~k~~vFl~tD~qI 145 (1650)
+..+- .+|+. +++.+-+..
T Consensus 86 i~~i~-~~gk~-pIlvGGt~~ 104 (307)
T PRK00091 86 IADIL-ARGKL-PILVGGTGL 104 (307)
T ss_pred HHHHH-hCCCC-EEEECcHHH
Confidence 88765 44443 444465554
No 266
>PRK06620 hypothetical protein; Validated
Probab=60.45 E-value=23 Score=39.96 Aligned_cols=86 Identities=13% Similarity=0.166 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHh-cCC-CCceEEEecCCchhhhHHHHHHHhcCCceEEEEEcccCCcchhHHHHHHHHHHhccCCCCCE
Q psy4724 59 YIIQHISRLCRIL-QQP-KGHAMLITIGGSGAAEVTKLATFMNEYVLFEIEILKTYGLTDWRDDLCRLMKKSGGKDAKPM 136 (1650)
Q Consensus 59 ~ai~Hv~rI~Ril-~~p-~G~alLvGvgGSGrqSLtrLAafi~~~~~fqIeitk~Yg~~~f~eDLk~l~~~~g~~~~k~~ 136 (1650)
.|...+.++.+-- ..| ....+|.|..||||.+|.+..+...+..+.. ..+..+ ..+ +...
T Consensus 26 ~a~~~~~~~~~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~---------~~~~~~--~~~-------~~~d 87 (214)
T PRK06620 26 QAYNIIKNWQCGFGVNPYKFTLLIKGPSSSGKTYLTKIWQNLSNAYIIK---------DIFFNE--EIL-------EKYN 87 (214)
T ss_pred HHHHHHHHHHHccccCCCcceEEEECCCCCCHHHHHHHHHhccCCEEcc---------hhhhch--hHH-------hcCC
Confidence 5666666665411 123 2458999999999999999866655431111 111111 112 1235
Q ss_pred EEEEecCCcCc-hhhHHHHHHHHhhhh
Q psy4724 137 TFLFSDTQIQN-EVFVEHINMLLNTAR 162 (1650)
Q Consensus 137 vFl~tD~qI~~-E~fLedIN~lL~tge 162 (1650)
++++.|-|-.+ +.+..-+|.+..+|.
T Consensus 88 ~lliDdi~~~~~~~lf~l~N~~~e~g~ 114 (214)
T PRK06620 88 AFIIEDIENWQEPALLHIFNIINEKQK 114 (214)
T ss_pred EEEEeccccchHHHHHHHHHHHHhcCC
Confidence 78889988554 345555577776663
No 267
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=60.36 E-value=7 Score=46.66 Aligned_cols=30 Identities=20% Similarity=0.444 Sum_probs=21.8
Q ss_pred HHhcCCCCceEEEecCCchhhh-HHHHHHHh
Q psy4724 69 RILQQPKGHAMLITIGGSGAAE-VTKLATFM 98 (1650)
Q Consensus 69 Ril~~p~G~alLvGvgGSGrqS-LtrLAafi 98 (1650)
+|++.+.|++++.|..||||.+ |+..++++
T Consensus 7 ~~i~~~~~~~lV~a~AGSGKT~~l~~ri~~l 37 (315)
T PF00580_consen 7 RIIRSTEGPLLVNAGAGSGKTTTLLERIAYL 37 (315)
T ss_dssp HHHHS-SSEEEEEE-TTSSHHHHHHHHHHHH
T ss_pred HHHhCCCCCEEEEeCCCCCchHHHHHHHHHh
Confidence 6777899999999999999998 44444443
No 268
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=59.95 E-value=13 Score=47.37 Aligned_cols=27 Identities=19% Similarity=0.187 Sum_probs=21.7
Q ss_pred CCCceEEEecCCchhhhHHHHHHHhcC
Q psy4724 74 PKGHAMLITIGGSGAAEVTKLATFMNE 100 (1650)
Q Consensus 74 p~G~alLvGvgGSGrqSLtrLAafi~~ 100 (1650)
|..++||.|+.|+||.+++|..|.-.+
T Consensus 215 ~p~GILLyGPPGTGKT~LAKAlA~eL~ 241 (512)
T TIGR03689 215 PPKGVLLYGPPGCGKTLIAKAVANSLA 241 (512)
T ss_pred CCcceEEECCCCCcHHHHHHHHHHhhc
Confidence 445599999999999999988666543
No 269
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=59.94 E-value=10 Score=40.90 Aligned_cols=40 Identities=5% Similarity=0.056 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEEecCCchhhhHHHHHHH
Q psy4724 58 LYIIQHISRLCRILQQPKGHAMLITIGGSGAAEVTKLATF 97 (1650)
Q Consensus 58 ~~ai~Hv~rI~Ril~~p~G~alLvGvgGSGrqSLtrLAaf 97 (1650)
..+|.++.+-.|-+.....++||.|..|+||..++|.--.
T Consensus 5 s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~ 44 (168)
T PF00158_consen 5 SPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHN 44 (168)
T ss_dssp SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHH
Confidence 4567777776666666669999999999999999887544
No 270
>PRK03839 putative kinase; Provisional
Probab=59.86 E-value=7.6 Score=42.39 Aligned_cols=29 Identities=21% Similarity=0.216 Sum_probs=23.2
Q ss_pred ceEEEecCCchhhhHHHHHHHhcCCceEE
Q psy4724 77 HAMLITIGGSGAAEVTKLATFMNEYVLFE 105 (1650)
Q Consensus 77 ~alLvGvgGSGrqSLtrLAafi~~~~~fq 105 (1650)
+.+|+|+.||||.|+++..|--.++.+..
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id 30 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVD 30 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEe
Confidence 47899999999999999777766665533
No 271
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=59.86 E-value=2.1e+02 Score=30.20 Aligned_cols=58 Identities=12% Similarity=0.232 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhcc
Q psy4724 777 NSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKLERAEKLIGGLGGEKTR 834 (1650)
Q Consensus 777 ~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~~Li~~L~~E~~r 834 (1650)
...+.++..++..++.|+.+++++.++....+.+....+.++..+..-+.++.+|..|
T Consensus 62 ~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~k 119 (151)
T PF11559_consen 62 RRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQK 119 (151)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444444444444444444444444444444444333
No 272
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=59.81 E-value=1.7e+02 Score=32.29 Aligned_cols=92 Identities=14% Similarity=0.174 Sum_probs=74.3
Q ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhc
Q psy4724 754 IVGPKKAKLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKLERAEKLIGGLGGEKT 833 (1650)
Q Consensus 754 ~v~P~~~~l~~~e~~l~~~~~~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~~Li~~L~~E~~ 833 (1650)
.+.-|+.-++.++.++.+++..+.+....|...+..+..-.........+.+.|..-++..+..+..++....+-..|-.
T Consensus 61 aL~GKq~iveqLe~ev~EAe~vV~ee~~sL~~aq~na~aA~~aa~~A~~q~~~L~~~l~~a~~nl~~a~~~a~~AQ~el~ 140 (188)
T PF05335_consen 61 ALAGKQQIVEQLEQEVREAEAVVQEEKASLQQAQANAQAAQRAAQQAQQQLETLKAALKAAQANLANAEQVAEGAQQELA 140 (188)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45568888999999999999999999999999999999999999999999999999999999999999998888666554
Q ss_pred cHHHHHHHHHHH
Q psy4724 834 RWSEASANLSKA 845 (1650)
Q Consensus 834 rW~~~~~~~~~~ 845 (1650)
-=..-+..-+.+
T Consensus 141 eK~qLLeaAk~R 152 (188)
T PF05335_consen 141 EKTQLLEAAKRR 152 (188)
T ss_pred HHHHHHHHHHHH
Confidence 433333333333
No 273
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=59.60 E-value=1.5e+02 Score=35.35 Aligned_cols=58 Identities=17% Similarity=0.212 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4724 758 KKAKLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCK 815 (1650)
Q Consensus 758 ~~~~l~~~e~~l~~~~~~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~ 815 (1650)
-+.++.++.+++.+++..|....++-..+..+|..|-.++..+..+++.|..+-..++
T Consensus 121 v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ 178 (499)
T COG4372 121 VRQELAAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQ 178 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555566666666666666655555555444433
No 274
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=59.53 E-value=34 Score=43.22 Aligned_cols=77 Identities=17% Similarity=0.274 Sum_probs=38.9
Q ss_pred HHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy4724 752 IKIVGPKKAKLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKS---KDKKELEDQIELCKQKLERAEKLIGGL 828 (1650)
Q Consensus 752 ~~~v~P~~~~l~~~e~~l~~~~~~L~~~~~~l~~~~~~l~~l~~~~~~~~---~e~~~l~~~~~~~~~rl~ra~~Li~~L 828 (1650)
.+.+.+....++.++.+.......+.+.+.++..++.+++.++.+..... .+...++.++..++.+|....+-++-|
T Consensus 421 ~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L 500 (652)
T COG2433 421 EKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEEL 500 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555666666666655555554322 222333444444444444444444443
No 275
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=59.53 E-value=86 Score=45.52 Aligned_cols=112 Identities=15% Similarity=0.161 Sum_probs=75.4
Q ss_pred CccchhhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHH
Q psy4724 737 SIPFQVLAMEVYDRVIKIVGPKKAKLAEAEADYAVQMEKLNSKRAQLATVLGKLQALR--------DELAQKSKDKKELE 808 (1650)
Q Consensus 737 s~a~Wv~A~~~Y~~v~~~v~P~~~~l~~~e~~l~~~~~~L~~~~~~l~~~~~~l~~l~--------~~~~~~~~e~~~l~ 808 (1650)
....|+.+-..|......+.-.+.+++.++..+..++..+...+.++..+++++..|+ .++.+..++...+.
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~l~~~~~~l~~~~a~~~~~eL~el~~ql~~~~ 346 (1353)
T TIGR02680 267 RATRLRSAQTQYDQLSRDLGRARDELETAREEERELDARTEALEREADALRTRLEALQGSPAYQDAEELERARADAEALQ 346 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 3347888999999999999999999999999998888888888888888888888776 45555555555555
Q ss_pred HHHHHHHHHHHHHHHHHhhhchhhccHHHHHHHHHHHHhh
Q psy4724 809 DQIELCKQKLERAEKLIGGLGGEKTRWSEASANLSKALVN 848 (1650)
Q Consensus 809 ~~~~~~~~rl~ra~~Li~~L~~E~~rW~~~~~~~~~~~~~ 848 (1650)
..++.....+..+..-...+..+..+=..........+..
T Consensus 347 ~~a~~~~~~~~~a~~~~e~~~~~~~~~~~r~~~~~~~l~~ 386 (1353)
T TIGR02680 347 AAAADARQAIREAESRLEEERRRLDEEAGRLDDAERELRA 386 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555544444444444433344444444333
No 276
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=59.51 E-value=1.2e+02 Score=36.30 Aligned_cols=98 Identities=19% Similarity=0.221 Sum_probs=85.1
Q ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhc
Q psy4724 754 IVGPKKAKLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKLERAEKLIGGLGGEKT 833 (1650)
Q Consensus 754 ~v~P~~~~l~~~e~~l~~~~~~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~~Li~~L~~E~~ 833 (1650)
.|.-....-.++..+|....+...+.++.|..-.+-...++.+.+........|+.+......|.+.+..-+-.+..|+.
T Consensus 203 ~~~~~~~~E~~Lr~QL~~Y~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~ 282 (309)
T PF09728_consen 203 QVQTLKETEKELREQLNLYSEKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQ 282 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 34444455566667777888888888888889999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhhchh
Q psy4724 834 RWSEASANLSKALVNCIG 851 (1650)
Q Consensus 834 rW~~~~~~~~~~~~~l~G 851 (1650)
.|...+..+..+...|-|
T Consensus 283 ~~~~~~~~~~~k~~kLe~ 300 (309)
T PF09728_consen 283 KLEKELEKLKKKIEKLEK 300 (309)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999888765
No 277
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=59.45 E-value=67 Score=36.50 Aligned_cols=81 Identities=19% Similarity=0.219 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhccHHHHHHHHHHHHhhchhHHHH---HHHHHHhc
Q psy4724 787 LGKLQALRDELAQKSKDKKELEDQIELCKQKLERAEKLIGGLGGEKTRWSEASANLSKALVNCIGDILI---CAGIITYL 863 (1650)
Q Consensus 787 ~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~~Li~~L~~E~~rW~~~~~~~~~~~~~l~Gd~ll---~aa~i~Y~ 863 (1650)
.+.++.|...-+....+.+.=+.++.-.+..|.++.+.|..|..|..|.+..++..+... ..||+-| +.-.=++.
T Consensus 73 ~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~~--~~~~~sl~~~stpqk~f~ 150 (307)
T PF10481_consen 73 MESCENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQAA--SSGDVSLNPCSTPQKSFA 150 (307)
T ss_pred HHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ccCCccccccCCchhhcc
Confidence 333333333344444444444445556667888999999999999999998888655443 3566432 22234566
Q ss_pred CCCCHH
Q psy4724 864 GAFTVD 869 (1650)
Q Consensus 864 G~f~~~ 869 (1650)
-|+++.
T Consensus 151 ~p~tp~ 156 (307)
T PF10481_consen 151 TPLTPS 156 (307)
T ss_pred CCCChh
Confidence 677666
No 278
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=59.35 E-value=2.3e+02 Score=29.61 Aligned_cols=49 Identities=16% Similarity=0.299 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4724 770 AVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKL 818 (1650)
Q Consensus 770 ~~~~~~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl 818 (1650)
..+++.+...+.++..+...+..|..+++....++..|....+..+.|+
T Consensus 48 En~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv 96 (140)
T PF10473_consen 48 ENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKV 96 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444445555555555555555555555555555554444444
No 279
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=59.34 E-value=30 Score=41.67 Aligned_cols=80 Identities=16% Similarity=0.128 Sum_probs=51.8
Q ss_pred CceE-EEecCCchhhhHHHHHHHhcC-------------------------CceEEEEEc----------ccCCcchhHH
Q psy4724 76 GHAM-LITIGGSGAAEVTKLATFMNE-------------------------YVLFEIEIL----------KTYGLTDWRD 119 (1650)
Q Consensus 76 G~al-LvGvgGSGrqSLtrLAafi~~-------------------------~~~fqIeit----------k~Yg~~~f~e 119 (1650)
.||+ +.|..|+||.++++.-|-..- -+++.|..+ +..++.+-|+
T Consensus 21 ~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~iR~ 100 (325)
T PRK08699 21 PNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAVRE 100 (325)
T ss_pred ceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHHHHH
Confidence 4655 889999999999886543311 245666553 2367777776
Q ss_pred HHHHHHHHhccCCCCCEEEEEecCCcCchhhHHHHHHHHhh
Q psy4724 120 DLCRLMKKSGGKDAKPMTFLFSDTQIQNEVFVEHINMLLNT 160 (1650)
Q Consensus 120 DLk~l~~~~g~~~~k~~vFl~tD~qI~~E~fLedIN~lL~t 160 (1650)
+..-+.... ..++.-|+++.+.+-.+. +-.|.+|.+
T Consensus 101 -l~~~~~~~p-~~~~~kV~iiEp~~~Ld~---~a~naLLk~ 136 (325)
T PRK08699 101 -IIDNVYLTS-VRGGLRVILIHPAESMNL---QAANSLLKV 136 (325)
T ss_pred -HHHHHhhCc-ccCCceEEEEechhhCCH---HHHHHHHHH
Confidence 434444444 356677888888887655 555777765
No 280
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=59.31 E-value=1.2e+02 Score=36.39 Aligned_cols=72 Identities=14% Similarity=0.092 Sum_probs=34.3
Q ss_pred HHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4724 752 IKIVGPKKAKLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKLERAEK 823 (1650)
Q Consensus 752 ~~~v~P~~~~l~~~e~~l~~~~~~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~~ 823 (1650)
-++.+-+.++|.+++.+.++..+++...+.+..++++.-.+.-..+.....+..+.+++.+.++.+++.+..
T Consensus 56 e~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~ 127 (314)
T PF04111_consen 56 EQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASN 127 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555555555555555555555555554444444444444444444444444444444444433
No 281
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=59.26 E-value=1.7e+02 Score=33.89 Aligned_cols=56 Identities=16% Similarity=0.278 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4724 761 KLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQ 816 (1650)
Q Consensus 761 ~l~~~e~~l~~~~~~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~ 816 (1650)
+++..+.+++...++|.+++++++++.+++.+.+..+.++..+..++...+.-++.
T Consensus 201 ~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~s 256 (269)
T PF05278_consen 201 KLELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIKS 256 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444444444444433333
No 282
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=59.19 E-value=77 Score=37.74 Aligned_cols=58 Identities=12% Similarity=0.145 Sum_probs=28.8
Q ss_pred ccchhhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4724 738 IPFQVLAMEVYDRVIKIVGPKKAKLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRD 795 (1650)
Q Consensus 738 ~a~Wv~A~~~Y~~v~~~v~P~~~~l~~~e~~l~~~~~~L~~~~~~l~~~~~~l~~l~~ 795 (1650)
...||.|..-|......-++....+..+...|...+..+...+.+...++.....++.
T Consensus 168 p~Kg~ka~evL~~fl~~~~~~~~~ilq~d~~L~~~ek~~~~~~~k~e~~e~e~~~l~e 225 (297)
T PF02841_consen 168 PGKGVKAEEVLQEFLQSKESMENSILQADQQLTEKEKEIEEEQAKAEAAEKEKEKLEE 225 (297)
T ss_dssp S---TTHHHHHHHHHHHCHHHHHHHHHH-TTS-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4478888877777666655555555555555555554444444444444444433333
No 283
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=59.00 E-value=9.7 Score=44.64 Aligned_cols=49 Identities=16% Similarity=0.237 Sum_probs=33.4
Q ss_pred HHHHHHhcCC---CCceEEEecCCchhhhHHH-HHHHhcCC--ceEEEEEcccCC
Q psy4724 65 SRLCRILQQP---KGHAMLITIGGSGAAEVTK-LATFMNEY--VLFEIEILKTYG 113 (1650)
Q Consensus 65 ~rI~Ril~~p---~G~alLvGvgGSGrqSLtr-LAafi~~~--~~fqIeitk~Yg 113 (1650)
-.+.+.|+.. +|+.+++|..||||.|+.+ |+.++... .+..||-+.-|.
T Consensus 114 ~~~~~~l~~~v~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~~ 168 (270)
T PF00437_consen 114 EEIAEFLRSAVRGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPELR 168 (270)
T ss_dssp HHHHHHHHHCHHTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S-
T ss_pred HHHHHHHhhccccceEEEEECCCccccchHHHHHhhhccccccceEEecccccee
Confidence 4455566655 9999999999999998853 45555544 677777554443
No 284
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=58.93 E-value=7.9 Score=42.58 Aligned_cols=25 Identities=16% Similarity=0.113 Sum_probs=21.3
Q ss_pred ceEEEecCCchhhhHHHHHHHhcCC
Q psy4724 77 HAMLITIGGSGAAEVTKLATFMNEY 101 (1650)
Q Consensus 77 ~alLvGvgGSGrqSLtrLAafi~~~ 101 (1650)
...|+|+.||||.||.|+-+-..+.
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~~~~ 28 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQREQT 28 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCC
Confidence 6789999999999999988766554
No 285
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=58.84 E-value=1.2e+02 Score=35.15 Aligned_cols=53 Identities=17% Similarity=0.248 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhccHHHHHHHHHH
Q psy4724 792 ALRDELAQKSKDKKELEDQIELCKQKLERAEKLIGGLGGEKTRWSEASANLSK 844 (1650)
Q Consensus 792 ~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~~Li~~L~~E~~rW~~~~~~~~~ 844 (1650)
.|+.+-.....++..|+.++...+....+-..-...-..|..+|...+...+.
T Consensus 65 rL~~~~~~~~eEk~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~ 117 (246)
T PF00769_consen 65 RLEEEAEMQEEEKEQLEQELREAEAEIARLEEESERKEEEAEELQEELEEARE 117 (246)
T ss_dssp HHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334444444444444444444444444445556677766655444
No 286
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=58.72 E-value=44 Score=40.22 Aligned_cols=95 Identities=17% Similarity=0.220 Sum_probs=63.7
Q ss_pred HHHHHHHHhcCCC-CceE-EEecCCchhhhHHHH-HHHh-cCC----------------------ceEEEEE--cccCCc
Q psy4724 63 HISRLCRILQQPK-GHAM-LITIGGSGAAEVTKL-ATFM-NEY----------------------VLFEIEI--LKTYGL 114 (1650)
Q Consensus 63 Hv~rI~Ril~~p~-G~al-LvGvgGSGrqSLtrL-Aafi-~~~----------------------~~fqIei--tk~Yg~ 114 (1650)
+..++.+.+.+.| .||+ +.|..|.||.++++- |.++ |+. +++.|+. .++.++
T Consensus 10 ~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~I~i 89 (325)
T PRK06871 10 TYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDNKDIGV 89 (325)
T ss_pred HHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccccCCCCCH
Confidence 3445667776655 5888 679999999999764 4444 311 2455644 456888
Q ss_pred chhHHHHHHHHHHhccCCCCCEEEEEecCCcCchhhHHHHHHHHhhhh
Q psy4724 115 TDWRDDLCRLMKKSGGKDAKPMTFLFSDTQIQNEVFVEHINMLLNTAR 162 (1650)
Q Consensus 115 ~~f~eDLk~l~~~~g~~~~k~~vFl~tD~qI~~E~fLedIN~lL~tge 162 (1650)
.+.|+=.+.+..+ . ..|+.-|+++.+.+-.++ +--|.||-|=|
T Consensus 90 d~iR~l~~~~~~~-~-~~g~~KV~iI~~a~~m~~---~AaNaLLKtLE 132 (325)
T PRK06871 90 DQVREINEKVSQH-A-QQGGNKVVYIQGAERLTE---AAANALLKTLE 132 (325)
T ss_pred HHHHHHHHHHhhc-c-ccCCceEEEEechhhhCH---HHHHHHHHHhc
Confidence 8888644444444 4 467778889999886443 56699998854
No 287
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=58.52 E-value=1.6e+02 Score=33.71 Aligned_cols=29 Identities=17% Similarity=0.192 Sum_probs=11.8
Q ss_pred HHHHHHHhhhchhhccHHHHHHHHHHHHh
Q psy4724 819 ERAEKLIGGLGGEKTRWSEASANLSKALV 847 (1650)
Q Consensus 819 ~ra~~Li~~L~~E~~rW~~~~~~~~~~~~ 847 (1650)
..=+.-+..|.+--.+-+..++.++..+.
T Consensus 91 q~Ke~qv~~lEgQl~s~Kkqie~Leqelk 119 (307)
T PF10481_consen 91 QVKESQVNFLEGQLNSCKKQIEKLEQELK 119 (307)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444443333
No 288
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=58.49 E-value=20 Score=37.93 Aligned_cols=29 Identities=14% Similarity=0.217 Sum_probs=20.6
Q ss_pred eEEEecCCchhhhHHHHHHHhc---CCceEEE
Q psy4724 78 AMLITIGGSGAAEVTKLATFMN---EYVLFEI 106 (1650)
Q Consensus 78 alLvGvgGSGrqSLtrLAafi~---~~~~fqI 106 (1650)
.+++|..||||.||++.-+-.. ++.++-+
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i 33 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVL 33 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 4789999999999988554443 5544444
No 289
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=58.48 E-value=26 Score=42.10 Aligned_cols=85 Identities=12% Similarity=0.085 Sum_probs=59.3
Q ss_pred CCc-eEEEecCCchhhhHHHHHH-Hhc-----------------------CCceEEEEEcccCCcchhHHHHHHHHHHhc
Q psy4724 75 KGH-AMLITIGGSGAAEVTKLAT-FMN-----------------------EYVLFEIEILKTYGLTDWRDDLCRLMKKSG 129 (1650)
Q Consensus 75 ~G~-alLvGvgGSGrqSLtrLAa-fi~-----------------------~~~~fqIeitk~Yg~~~f~eDLk~l~~~~g 129 (1650)
..| .||.|+.|+||.+++..-| .+- ..++.++..+...+.+--++.++.+.....
T Consensus 23 ~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~~i~~~~vr~~~~~~~ 102 (325)
T COG0470 23 LPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKIDIIVEQVRELAEFLS 102 (325)
T ss_pred CCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecccccCCCcchHHHHHHHHHHhc
Confidence 346 8999999999999976544 333 147888888877776555666776666554
Q ss_pred cC--CCCCEEEEEecCCcCchhhHHHHHHHHhhhh
Q psy4724 130 GK--DAKPMTFLFSDTQIQNEVFVEHINMLLNTAR 162 (1650)
Q Consensus 130 ~~--~~k~~vFl~tD~qI~~E~fLedIN~lL~tge 162 (1650)
.. .++.-|+++.+.+-..+ .-.|.+|-|-|
T Consensus 103 ~~~~~~~~kviiidead~mt~---~A~nallk~lE 134 (325)
T COG0470 103 ESPLEGGYKVVIIDEADKLTE---DAANALLKTLE 134 (325)
T ss_pred cCCCCCCceEEEeCcHHHHhH---HHHHHHHHHhc
Confidence 22 26778888888875433 44588988866
No 290
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=58.46 E-value=16 Score=40.62 Aligned_cols=54 Identities=24% Similarity=0.284 Sum_probs=37.5
Q ss_pred CCCCc-eEEEecCCchhhhHHHHHHHhcCCceEEEEEccc-CCcchhHHHHHHHHHHhc
Q psy4724 73 QPKGH-AMLITIGGSGAAEVTKLATFMNEYVLFEIEILKT-YGLTDWRDDLCRLMKKSG 129 (1650)
Q Consensus 73 ~p~G~-alLvGvgGSGrqSLtrLAafi~~~~~fqIeitk~-Yg~~~f~eDLk~l~~~~g 129 (1650)
-.+|. ..+||++||||.+|-|.-..+-..+-=+|.+.-. -+.. .|+.++=.+.|
T Consensus 25 v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~---~~~~~~R~~vG 80 (240)
T COG1126 25 VEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDK---KDILKLRRKVG 80 (240)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccch---hhHHHHHHhcC
Confidence 34554 5689999999999999988888777777777621 1111 17766666666
No 291
>PRK08116 hypothetical protein; Validated
Probab=58.29 E-value=60 Score=38.02 Aligned_cols=94 Identities=11% Similarity=0.128 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHhc-CCCCc--eEEEecCCchhhhHHHHHHHh---cCCceEEEEEcccCCcchhHHHHHHHHHHhc----
Q psy4724 60 IIQHISRLCRILQ-QPKGH--AMLITIGGSGAAEVTKLATFM---NEYVLFEIEILKTYGLTDWRDDLCRLMKKSG---- 129 (1650)
Q Consensus 60 ai~Hv~rI~Ril~-~p~G~--alLvGvgGSGrqSLtrLAafi---~~~~~fqIeitk~Yg~~~f~eDLk~l~~~~g---- 129 (1650)
|+.++.+++.-+. +..++ .+|.|..||||..|+...+.- .++.+.-+ +.++|..+++..|...+
T Consensus 96 a~~~a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~------~~~~ll~~i~~~~~~~~~~~~ 169 (268)
T PRK08116 96 AYKIARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFV------NFPQLLNRIKSTYKSSGKEDE 169 (268)
T ss_pred HHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE------EHHHHHHHHHHHHhccccccH
Confidence 4444444444432 22334 899999999998887744432 24444333 24555555554332111
Q ss_pred -----cCCCCCEEEEEecCCc--CchhhHHHHHHHHhh
Q psy4724 130 -----GKDAKPMTFLFSDTQI--QNEVFVEHINMLLNT 160 (1650)
Q Consensus 130 -----~~~~k~~vFl~tD~qI--~~E~fLedIN~lL~t 160 (1650)
...+-+ +++|.|=+. ..+...+.+-+++++
T Consensus 170 ~~~~~~l~~~d-lLviDDlg~e~~t~~~~~~l~~iin~ 206 (268)
T PRK08116 170 NEIIRSLVNAD-LLILDDLGAERDTEWAREKVYNIIDS 206 (268)
T ss_pred HHHHHHhcCCC-EEEEecccCCCCCHHHHHHHHHHHHH
Confidence 012223 677788643 234445555556655
No 292
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=58.18 E-value=34 Score=38.82 Aligned_cols=35 Identities=11% Similarity=-0.012 Sum_probs=26.1
Q ss_pred CCCCceEEEecCCchhhhHHHHHHHhc---CCceEEEE
Q psy4724 73 QPKGHAMLITIGGSGAAEVTKLATFMN---EYVLFEIE 107 (1650)
Q Consensus 73 ~p~G~alLvGvgGSGrqSLtrLAafi~---~~~~fqIe 107 (1650)
.+.++.+|.|..||||.+|++..+.-. +..+.-++
T Consensus 40 ~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~ 77 (227)
T PRK08903 40 VADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLD 77 (227)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEe
Confidence 456789999999999999999877643 33444443
No 293
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=58.12 E-value=7.9 Score=42.99 Aligned_cols=22 Identities=27% Similarity=0.416 Sum_probs=19.0
Q ss_pred eEEEecCCchhhh-HHHHHHHhc
Q psy4724 78 AMLITIGGSGAAE-VTKLATFMN 99 (1650)
Q Consensus 78 alLvGvgGSGrqS-LtrLAafi~ 99 (1650)
.+|||+.|+||.| ++|||++..
T Consensus 4 i~lvGptGvGKTTt~aKLAa~~~ 26 (196)
T PF00448_consen 4 IALVGPTGVGKTTTIAKLAARLK 26 (196)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCchHhHHHHHHHHHh
Confidence 5799999999976 589999874
No 294
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=57.99 E-value=66 Score=39.46 Aligned_cols=68 Identities=15% Similarity=0.192 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhch
Q psy4724 763 AEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKLERAEKLIGGLGG 830 (1650)
Q Consensus 763 ~~~e~~l~~~~~~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~~Li~~L~~ 830 (1650)
...++++...+.++++.+.++....++.+.|++++.+...+...++.++..+...+...++=|..+..
T Consensus 34 ~a~~~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~ 101 (420)
T COG4942 34 AADDKQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNA 101 (420)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHH
Confidence 33347788888888888888888888888888888888888888888888888888877776666544
No 295
>PRK08233 hypothetical protein; Provisional
Probab=57.80 E-value=12 Score=40.61 Aligned_cols=28 Identities=14% Similarity=0.307 Sum_probs=19.5
Q ss_pred EEEecCCchhhhHHH-HHHHhcCCceEEE
Q psy4724 79 MLITIGGSGAAEVTK-LATFMNEYVLFEI 106 (1650)
Q Consensus 79 lLvGvgGSGrqSLtr-LAafi~~~~~fqI 106 (1650)
.+.|.+||||.||++ ||..+.+..++..
T Consensus 7 ~I~G~~GsGKtTla~~L~~~l~~~~~~~~ 35 (182)
T PRK08233 7 TIAAVSGGGKTTLTERLTHKLKNSKALYF 35 (182)
T ss_pred EEECCCCCCHHHHHHHHHhhCCCCceEEE
Confidence 456999999999876 6666654444333
No 296
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=57.59 E-value=1.2e+02 Score=33.49 Aligned_cols=65 Identities=18% Similarity=0.346 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhch
Q psy4724 766 EADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKLERAEKLIGGLGG 830 (1650)
Q Consensus 766 e~~l~~~~~~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~~Li~~L~~ 830 (1650)
+.++.+.+..+.....++.++++++..++..+.........+....+..+.+++....-+..+..
T Consensus 80 ~~e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 144 (191)
T PF04156_consen 80 QGELSELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEK 144 (191)
T ss_pred hhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555555555555555555555555544444444444444444444444444433
No 297
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=57.42 E-value=31 Score=38.95 Aligned_cols=69 Identities=14% Similarity=0.170 Sum_probs=43.1
Q ss_pred CCCC-ceEEEecCCchhhhHHHHHHHhcCCceEEEEEcccCCcchh-HHHHHHHHHHhccCCCCCEEEEEecCCcCchhh
Q psy4724 73 QPKG-HAMLITIGGSGAAEVTKLATFMNEYVLFEIEILKTYGLTDW-RDDLCRLMKKSGGKDAKPMTFLFSDTQIQNEVF 150 (1650)
Q Consensus 73 ~p~G-~alLvGvgGSGrqSLtrLAafi~~~~~fqIeitk~Yg~~~f-~eDLk~l~~~~g~~~~k~~vFl~tD~qI~~E~f 150 (1650)
.|.| ++-+||..||||.||-|--..+.+-.-=+|.+.. ...... -..++++-.++ -|+|.+-.+++...
T Consensus 27 I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g-~~i~~~~~k~lr~~r~~i--------GmIfQ~~nLv~r~s 97 (258)
T COG3638 27 INQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNG-VQITKLKGKELRKLRRDI--------GMIFQQFNLVPRLS 97 (258)
T ss_pred eCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecc-cchhccchHHHHHHHHhc--------eeEeccCCcccccH
Confidence 3444 8889999999999999988876655444554441 111111 12244444444 46888888886633
No 298
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=57.38 E-value=20 Score=40.43 Aligned_cols=20 Identities=15% Similarity=0.094 Sum_probs=17.6
Q ss_pred ceEEEecCCchhhhHHHHHH
Q psy4724 77 HAMLITIGGSGAAEVTKLAT 96 (1650)
Q Consensus 77 ~alLvGvgGSGrqSLtrLAa 96 (1650)
-.+|+|+.||||.+|-|..+
T Consensus 31 ~~~itGpNg~GKStlLk~i~ 50 (213)
T cd03281 31 IMVITGPNSSGKSVYLKQVA 50 (213)
T ss_pred EEEEECCCCCChHHHHHHHH
Confidence 37899999999999988765
No 299
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=57.27 E-value=2.5e+02 Score=33.15 Aligned_cols=72 Identities=15% Similarity=0.296 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhccHHHHHHHHHHH
Q psy4724 774 EKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKLERAEKLIGGLGGEKTRWSEASANLSKA 845 (1650)
Q Consensus 774 ~~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~~Li~~L~~E~~rW~~~~~~~~~~ 845 (1650)
.++...+..+..+.++++.++.+.++..++..++...++.....+.+...+..............+...+..
T Consensus 63 ~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (302)
T PF10186_consen 63 REIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLSASQDLVESRQEQLEELQNELEERKQR 134 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444555555555555555555555555555555444433444444433333444444433333
No 300
>PTZ00202 tuzin; Provisional
Probab=57.25 E-value=42 Score=41.56 Aligned_cols=74 Identities=18% Similarity=0.213 Sum_probs=48.4
Q ss_pred CCcceeehHHHHHHHHHHHHHhcCC-CC---ceEEEecCCchhhhHHHHHHHhcCCceEEEEEcccCCcchhHHHHHHHH
Q psy4724 50 KPIDIVTFLYIIQHISRLCRILQQP-KG---HAMLITIGGSGAAEVTKLATFMNEYVLFEIEILKTYGLTDWRDDLCRLM 125 (1650)
Q Consensus 50 ~~m~lVlF~~ai~Hv~rI~Ril~~p-~G---~alLvGvgGSGrqSLtrLAafi~~~~~fqIeitk~Yg~~~f~eDLk~l~ 125 (1650)
.|-++--|--=-..+.++.++|... .+ -+.|+|.+|+||.+|.|.+..-.+ ..+.-+. .+|. .|-|+.++
T Consensus 257 lPa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~--~~qL~vN-prg~---eElLr~LL 330 (550)
T PTZ00202 257 APAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG--MPAVFVD-VRGT---EDTLRSVV 330 (550)
T ss_pred CCCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC--ceEEEEC-CCCH---HHHHHHHH
Confidence 3445666666666777888888642 22 458999999999999999887666 2333222 2243 44455557
Q ss_pred HHhc
Q psy4724 126 KKSG 129 (1650)
Q Consensus 126 ~~~g 129 (1650)
..-|
T Consensus 331 ~ALG 334 (550)
T PTZ00202 331 KALG 334 (550)
T ss_pred HHcC
Confidence 7666
No 301
>KOG0161|consensus
Probab=56.99 E-value=1.1e+02 Score=44.98 Aligned_cols=88 Identities=23% Similarity=0.287 Sum_probs=47.8
Q ss_pred HhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhh
Q psy4724 753 KIVGPKKAKLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKLERAEKLIGGLGGEK 832 (1650)
Q Consensus 753 ~~v~P~~~~l~~~e~~l~~~~~~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~~Li~~L~~E~ 832 (1650)
.+|.-++..+++.+..+.+.+.+......++..+++.+..+.+.++...+++..++.....+...+...+.=..+|...+
T Consensus 936 ~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~~~e~~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~ 1015 (1930)
T KOG0161|consen 936 QEVQELKEQLEELELTLQKLELEKNAAENKLKNLEEEINSLDENISKLSKEKKELEERIRELQDDLQAEEEKAKSLNKAK 1015 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445555555555555555555555666666666666666666666666666655555555544444444444444
Q ss_pred ccHHHHHH
Q psy4724 833 TRWSEASA 840 (1650)
Q Consensus 833 ~rW~~~~~ 840 (1650)
.+-..+++
T Consensus 1016 ~kle~~l~ 1023 (1930)
T KOG0161|consen 1016 AKLEQQLD 1023 (1930)
T ss_pred HHHHHHHH
Confidence 44444333
No 302
>PRK00106 hypothetical protein; Provisional
Probab=56.84 E-value=2.3e+02 Score=36.44 Aligned_cols=72 Identities=21% Similarity=0.283 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhh
Q psy4724 761 KLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKLERAEKLIGGLGGEK 832 (1650)
Q Consensus 761 ~l~~~e~~l~~~~~~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~~Li~~L~~E~ 832 (1650)
++.+.|..+...++.|......|..-++.|...+++++...++.++.+.+++........--.=+.||+.|.
T Consensus 98 rL~qrE~rL~qREE~LekRee~LekrE~eLe~kekeLe~reeeLee~~~~~~~~~~~~~~~Le~~a~lt~~e 169 (535)
T PRK00106 98 ELKQIESRLTERATSLDRKDENLSSKEKTLESKEQSLTDKSKHIDEREEQVEKLEEQKKAELERVAALSQAE 169 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH
Confidence 344444445555555555555555555555555555544444444444444444433333333345555443
No 303
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=56.79 E-value=8.1 Score=39.85 Aligned_cols=26 Identities=19% Similarity=0.233 Sum_probs=21.1
Q ss_pred CCCceEEEecCCchhhhHHHHHHHhc
Q psy4724 74 PKGHAMLITIGGSGAAEVTKLATFMN 99 (1650)
Q Consensus 74 p~G~alLvGvgGSGrqSLtrLAafi~ 99 (1650)
|+.+..++|..||||.||.++-+=..
T Consensus 10 ~g~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 10 PGEIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEEccCCCccccceeeecccc
Confidence 56689999999999999998655443
No 304
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=56.76 E-value=22 Score=38.28 Aligned_cols=81 Identities=15% Similarity=0.203 Sum_probs=55.7
Q ss_pred CceEEEecCCchhhhHHHHHHHhcCCceEEEE-------------EcccCCcchhHHHHHHHHHHhccCCCCCEEEEEec
Q psy4724 76 GHAMLITIGGSGAAEVTKLATFMNEYVLFEIE-------------ILKTYGLTDWRDDLCRLMKKSGGKDAKPMTFLFSD 142 (1650)
Q Consensus 76 G~alLvGvgGSGrqSLtrLAafi~~~~~fqIe-------------itk~Yg~~~f~eDLk~l~~~~g~~~~k~~vFl~tD 142 (1650)
-|..|||.-|+||.|+.|.-|--.++.++-.. +-..||...||+==..++...- ...+.|+=-+-
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D~~Ie~~~g~sI~eIF~~~GE~~FR~~E~~vl~~l~--~~~~~ViaTGG 80 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTDQEIEKRTGMSIAEIFEEEGEEGFRRLETEVLKELL--EEDNAVIATGG 80 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccchHHHHHHHCcCHHHHHHHHhHHHHHHHHHHHHHHHh--hcCCeEEECCC
Confidence 46899999999999999988877787776652 2234788888875556666654 33366666666
Q ss_pred CCcCchhhHHHHHHHHhhh
Q psy4724 143 TQIQNEVFVEHINMLLNTA 161 (1650)
Q Consensus 143 ~qI~~E~fLedIN~lL~tg 161 (1650)
.-|.+| |..|.|.+.|
T Consensus 81 G~v~~~---enr~~l~~~g 96 (172)
T COG0703 81 GAVLSE---ENRNLLKKRG 96 (172)
T ss_pred ccccCH---HHHHHHHhCC
Confidence 666544 4455565554
No 305
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=56.53 E-value=46 Score=36.01 Aligned_cols=66 Identities=26% Similarity=0.369 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4724 758 KKAKLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDEL--AQKSKDKKELEDQIELCKQKLERAEK 823 (1650)
Q Consensus 758 ~~~~l~~~e~~l~~~~~~L~~~~~~l~~~~~~l~~l~~~~--~~~~~e~~~l~~~~~~~~~rl~ra~~ 823 (1650)
....+.++..++...++++...+.++..++..+..|.... +++..+...|+.+++.++.||.....
T Consensus 70 s~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 70 SPEELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567777788888888888888888888888888887776 56677777777777777777765443
No 306
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=56.43 E-value=13 Score=45.58 Aligned_cols=43 Identities=16% Similarity=0.198 Sum_probs=31.6
Q ss_pred hcCCCCceEEEecCCchhhhHH-HHHHHhc----CCceEEEEEcccCC
Q psy4724 71 LQQPKGHAMLITIGGSGAAEVT-KLATFMN----EYVLFEIEILKTYG 113 (1650)
Q Consensus 71 l~~p~G~alLvGvgGSGrqSLt-rLAafi~----~~~~fqIeitk~Yg 113 (1650)
+..++|..|++|..||||.|+. -|+.++. +..+++||-..-|.
T Consensus 145 l~~~~GlilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~ 192 (372)
T TIGR02525 145 LLPAAGLGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYI 192 (372)
T ss_pred HHhcCCEEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhc
Confidence 3458999999999999999886 4567774 34677776554443
No 307
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=56.40 E-value=7.7 Score=43.57 Aligned_cols=27 Identities=15% Similarity=0.253 Sum_probs=22.3
Q ss_pred cCCCCceEEEecCCchhhhHHHHHHHh
Q psy4724 72 QQPKGHAMLITIGGSGAAEVTKLATFM 98 (1650)
Q Consensus 72 ~~p~G~alLvGvgGSGrqSLtrLAafi 98 (1650)
+.+.|...|+|..||||.||.++-+=+
T Consensus 22 ~i~~g~~~i~G~nGsGKSTLl~~l~Gl 48 (211)
T cd03264 22 TLGPGMYGLLGPNGAGKTTLMRILATL 48 (211)
T ss_pred EEcCCcEEEECCCCCCHHHHHHHHhCC
Confidence 334469999999999999999988744
No 308
>PRK06547 hypothetical protein; Provisional
Probab=56.31 E-value=15 Score=39.97 Aligned_cols=28 Identities=14% Similarity=0.203 Sum_probs=19.1
Q ss_pred ceEEEecCCchhhhHHHHHHHhcCCceE
Q psy4724 77 HAMLITIGGSGAAEVTKLATFMNEYVLF 104 (1650)
Q Consensus 77 ~alLvGvgGSGrqSLtrLAafi~~~~~f 104 (1650)
-.++.|..||||.|+++.-+-..++.++
T Consensus 17 ~i~i~G~~GsGKTt~a~~l~~~~~~~~~ 44 (172)
T PRK06547 17 TVLIDGRSGSGKTTLAGALAARTGFQLV 44 (172)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCee
Confidence 4444599999999998765544454433
No 309
>KOG3809|consensus
Probab=56.23 E-value=9.9 Score=45.21 Aligned_cols=23 Identities=17% Similarity=0.160 Sum_probs=19.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHH
Q psy4724 1498 SMNTVLKQELIRYNRLTVIIKKS 1520 (1650)
Q Consensus 1498 ~~~~vl~qE~~r~n~ll~~i~~s 1520 (1650)
+-.+|.-||-++-|.||+.|.+-
T Consensus 92 ~akIVaG~epE~TNelLQ~~g~~ 114 (583)
T KOG3809|consen 92 AAKIVAGKEPEETNELLQMLGTN 114 (583)
T ss_pred hhhhhcCCCHHHHHHHHHHHHHH
Confidence 33578999999999999999765
No 310
>KOG0734|consensus
Probab=56.21 E-value=20 Score=44.53 Aligned_cols=62 Identities=16% Similarity=0.303 Sum_probs=41.5
Q ss_pred cCCCCceEEEecCCchhhhHHHHHHHhcCCceEEEEEcccCCcchhHHH--------HHHHHHHhccCCCCCEEEEEec
Q psy4724 72 QQPKGHAMLITIGGSGAAEVTKLATFMNEYVLFEIEILKTYGLTDWRDD--------LCRLMKKSGGKDAKPMTFLFSD 142 (1650)
Q Consensus 72 ~~p~G~alLvGvgGSGrqSLtrLAafi~~~~~fqIeitk~Yg~~~f~eD--------Lk~l~~~~g~~~~k~~vFl~tD 142 (1650)
+.|+| .||||+.|.||.-|+|--|==++-.+|-- .-++|-|= ++.++.. + ..+-||++.+.+
T Consensus 335 KLPKG-VLLvGPPGTGKTlLARAvAGEA~VPFF~~------sGSEFdEm~VGvGArRVRdLF~a-A-k~~APcIIFIDE 404 (752)
T KOG0734|consen 335 KLPKG-VLLVGPPGTGKTLLARAVAGEAGVPFFYA------SGSEFDEMFVGVGARRVRDLFAA-A-KARAPCIIFIDE 404 (752)
T ss_pred cCCCc-eEEeCCCCCchhHHHHHhhcccCCCeEec------cccchhhhhhcccHHHHHHHHHH-H-HhcCCeEEEEec
Confidence 35666 67999999999999998886667666655 23444442 3455654 4 467777765543
No 311
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=56.16 E-value=79 Score=38.54 Aligned_cols=91 Identities=15% Similarity=0.117 Sum_probs=61.2
Q ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy4724 748 YDRVIKIVGPKKAKLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKLERAEKLIGG 827 (1650)
Q Consensus 748 Y~~v~~~v~P~~~~l~~~e~~l~~~~~~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~~Li~~ 827 (1650)
|+.++..++-++...+++.+.+.+|+ ++.++++.|...+.+.+..-..++..+..++.|.+.---++..
T Consensus 266 ~~~i~~~i~~lk~~n~~l~e~i~ea~-----------k~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~k 334 (622)
T COG5185 266 VHIINTDIANLKTQNDNLYEKIQEAM-----------KISQKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEK 334 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHH
Confidence 66677777777766666665555444 4556666666777777777777777777777777777777777
Q ss_pred hchhhccHHHHHHHHHHHHhhc
Q psy4724 828 LGGEKTRWSEASANLSKALVNC 849 (1650)
Q Consensus 828 L~~E~~rW~~~~~~~~~~~~~l 849 (1650)
|..|-+.=.++++.++.+...|
T Consensus 335 l~~eie~kEeei~~L~~~~d~L 356 (622)
T COG5185 335 LKSEIELKEEEIKALQSNIDEL 356 (622)
T ss_pred HHHHHHHHHHHHHHHHhhHHHH
Confidence 7777666666666666655443
No 312
>PF13173 AAA_14: AAA domain
Probab=55.84 E-value=30 Score=35.39 Aligned_cols=82 Identities=15% Similarity=0.154 Sum_probs=48.6
Q ss_pred CCceEEEecCCchhhhHH-HHHHHhc-CCceEEEEEcc--cCCcchhHHHHHHHHHHhccCCCCCEEEEEecCCcCchhh
Q psy4724 75 KGHAMLITIGGSGAAEVT-KLATFMN-EYVLFEIEILK--TYGLTDWRDDLCRLMKKSGGKDAKPMTFLFSDTQIQNEVF 150 (1650)
Q Consensus 75 ~G~alLvGvgGSGrqSLt-rLAafi~-~~~~fqIeitk--~Yg~~~f~eDLk~l~~~~g~~~~k~~vFl~tD~qI~~E~f 150 (1650)
+.-.+|.|+-|+||.+|. ++|.... +..++-|.... .+...++ |+...+.+. ..+++..++|.+-|-.. .+
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~--~~~~~~~~~--~~~~~~~i~iDEiq~~~-~~ 76 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADP--DLLEYFLEL--IKPGKKYIFIDEIQYLP-DW 76 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhh--hhHHHHHHh--hccCCcEEEEehhhhhc-cH
Confidence 345789999999999998 4554443 34455553331 1111111 133444443 22356677788888765 47
Q ss_pred HHHHHHHHhhh
Q psy4724 151 VEHINMLLNTA 161 (1650)
Q Consensus 151 LedIN~lL~tg 161 (1650)
.+.++.+...+
T Consensus 77 ~~~lk~l~d~~ 87 (128)
T PF13173_consen 77 EDALKFLVDNG 87 (128)
T ss_pred HHHHHHHHHhc
Confidence 77788887765
No 313
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=55.70 E-value=68 Score=35.47 Aligned_cols=71 Identities=18% Similarity=0.198 Sum_probs=42.1
Q ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4724 745 MEVYDRVIKIVGPKKAKLAEAEADYAVQMEKLNS-KRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCK 815 (1650)
Q Consensus 745 ~~~Y~~v~~~v~P~~~~l~~~e~~l~~~~~~L~~-~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~ 815 (1650)
+.+.+...+++.-.+++++++.++.+.+.+.-.. ..++.+..++++++++++++++..+.+.|+++.+..+
T Consensus 117 I~r~~~li~~l~~~~~~~~~~~kq~~~~~~~~~~~~~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~ 188 (192)
T PF05529_consen 117 IRRVHSLIKELIKLEEKLEALKKQAESASEAAEKLLKEENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQ 188 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444555555666666666555444333332 3445566677777777777777777777777766554
No 314
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=55.49 E-value=9.1 Score=46.15 Aligned_cols=26 Identities=15% Similarity=0.326 Sum_probs=23.2
Q ss_pred CC-CceEEEecCCchhhhHHHHHHHhc
Q psy4724 74 PK-GHAMLITIGGSGAAEVTKLATFMN 99 (1650)
Q Consensus 74 p~-G~alLvGvgGSGrqSLtrLAafi~ 99 (1650)
|+ ||.||.|+.|+||.+|+|.-+.+.
T Consensus 27 ~~~~~vLl~G~pG~gKT~lar~la~ll 53 (334)
T PRK13407 27 PGIGGVLVFGDRGTGKSTAVRALAALL 53 (334)
T ss_pred cCCCcEEEEcCCCCCHHHHHHHHHHHC
Confidence 55 899999999999999999777775
No 315
>KOG0933|consensus
Probab=55.43 E-value=91 Score=41.81 Aligned_cols=104 Identities=13% Similarity=0.129 Sum_probs=0.0
Q ss_pred HHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy4724 750 RVIKIVGPKKAKLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKLERAEKLIGGLG 829 (1650)
Q Consensus 750 ~v~~~v~P~~~~l~~~e~~l~~~~~~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~~Li~~L~ 829 (1650)
+-...+.-...+.++++.++...+..|......+..+...+..+.........+...++.++..+..++.-..+-++++.
T Consensus 812 k~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~~dt~i~~~~ 891 (1174)
T KOG0933|consen 812 KRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRDIDTEISGLL 891 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhHHHhhhh
Q ss_pred hhhccHHHHHHHHHHHHhhchhHH
Q psy4724 830 GEKTRWSEASANLSKALVNCIGDI 853 (1650)
Q Consensus 830 ~E~~rW~~~~~~~~~~~~~l~Gd~ 853 (1650)
.+.+.-.......+.....+.++.
T Consensus 892 ~~~e~~~~e~~~~~l~~kkle~e~ 915 (1174)
T KOG0933|consen 892 TSQEKCLSEKSDGELERKKLEHEV 915 (1174)
T ss_pred hHHHHHHHHhhcccchHHHHHhHH
No 316
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=55.42 E-value=1.8e+02 Score=34.76 Aligned_cols=57 Identities=21% Similarity=0.279 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4724 768 DYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKLERAEKL 824 (1650)
Q Consensus 768 ~l~~~~~~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~~L 824 (1650)
.+..++++|.....++.....++++++.++++.....+....+...+...+..|++.
T Consensus 205 eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~ 261 (312)
T smart00787 205 ELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKK 261 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444444444444444444443
No 317
>PRK03918 chromosome segregation protein; Provisional
Probab=55.25 E-value=96 Score=43.17 Aligned_cols=22 Identities=5% Similarity=0.140 Sum_probs=10.7
Q ss_pred EEEEeCCCCCCCCcccccceEEEEe
Q psy4724 1023 LYITTRLKNPHYIPEILTKITLINF 1047 (1650)
Q Consensus 1023 L~l~Tk~~np~~~pe~~~~~tvinf 1047 (1650)
++++|... ++ .+++.++.+|..
T Consensus 847 iiiith~~--~~-~~~~d~~~~l~~ 868 (880)
T PRK03918 847 VIIVSHDE--EL-KDAADYVIRVSL 868 (880)
T ss_pred EEEEECCH--HH-HHhCCeEEEEEe
Confidence 55555442 22 345555555543
No 318
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=55.21 E-value=16 Score=47.91 Aligned_cols=42 Identities=19% Similarity=0.291 Sum_probs=30.5
Q ss_pred eeehHHHHHHHHHHHHHhcCCCCceEEEecCCchhhhHHHHHHHhc
Q psy4724 54 IVTFLYIIQHISRLCRILQQPKGHAMLITIGGSGAAEVTKLATFMN 99 (1650)
Q Consensus 54 lVlF~~ai~Hv~rI~Ril~~p~G~alLvGvgGSGrqSLtrLAafi~ 99 (1650)
++=.++|++++.+ .+.+ +.|+|++|..|+||.+|+|.-+-..
T Consensus 33 vigq~~a~~~L~~---~~~~-~~~~l~~G~~G~GKttla~~l~~~l 74 (637)
T PRK13765 33 VIGQEHAVEVIKK---AAKQ-RRHVMMIGSPGTGKSMLAKAMAELL 74 (637)
T ss_pred cCChHHHHHHHHH---HHHh-CCeEEEECCCCCcHHHHHHHHHHHc
Confidence 4445677776555 3444 4599999999999999998765543
No 319
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=54.82 E-value=9 Score=37.90 Aligned_cols=20 Identities=15% Similarity=0.170 Sum_probs=18.1
Q ss_pred ceEEEecCCchhhhHHHHHH
Q psy4724 77 HAMLITIGGSGAAEVTKLAT 96 (1650)
Q Consensus 77 ~alLvGvgGSGrqSLtrLAa 96 (1650)
-..|+|..||||.||.++..
T Consensus 17 ~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 17 GVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEcCCCCCHHHHHHHhh
Confidence 47899999999999999965
No 320
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=54.63 E-value=57 Score=42.99 Aligned_cols=88 Identities=18% Similarity=0.355 Sum_probs=52.6
Q ss_pred HHHHhcCC-CCce-EEEecCCchhhhHHHH-HHHhc------------------------CCceEEEEEcccCCcchhHH
Q psy4724 67 LCRILQQP-KGHA-MLITIGGSGAAEVTKL-ATFMN------------------------EYVLFEIEILKTYGLTDWRD 119 (1650)
Q Consensus 67 I~Ril~~p-~G~a-lLvGvgGSGrqSLtrL-Aafi~------------------------~~~~fqIeitk~Yg~~~f~e 119 (1650)
+.+.++.. -.|+ ||.|.-|+||.+++++ |..+. .++++.+.-..+.+. +
T Consensus 29 L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~~~ld~~~~~~v----d 104 (614)
T PRK14971 29 LKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNIHELDAASNNSV----D 104 (614)
T ss_pred HHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCceEEecccccCCH----H
Confidence 44445442 3575 6889999999999987 44442 134555554433444 4
Q ss_pred HHHHHHHH---hccCCCCCEEEEEecCCcCchhhHHHHHHHHhhhh
Q psy4724 120 DLCRLMKK---SGGKDAKPMTFLFSDTQIQNEVFVEHINMLLNTAR 162 (1650)
Q Consensus 120 DLk~l~~~---~g~~~~k~~vFl~tD~qI~~E~fLedIN~lL~tge 162 (1650)
|++.+... .. ..++.-|+++.+.+-... +..|.||.+=|
T Consensus 105 ~Ir~li~~~~~~P-~~~~~KVvIIdea~~Ls~---~a~naLLK~LE 146 (614)
T PRK14971 105 DIRNLIEQVRIPP-QIGKYKIYIIDEVHMLSQ---AAFNAFLKTLE 146 (614)
T ss_pred HHHHHHHHHhhCc-ccCCcEEEEEECcccCCH---HHHHHHHHHHh
Confidence 45444432 23 235566888988776544 45677776633
No 321
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=54.52 E-value=93 Score=40.02 Aligned_cols=19 Identities=32% Similarity=0.671 Sum_probs=13.1
Q ss_pred HHHHHHHHHcCCeEEEecccc
Q psy4724 965 LRTLERAIRTGTAVLLENIQE 985 (1650)
Q Consensus 965 ~~~le~ai~~G~~vlie~v~e 985 (1650)
.+.+|.+ .|.-|||.|-++
T Consensus 227 ir~~e~~--tgvd~iiddtp~ 245 (514)
T TIGR03319 227 IRALETL--TGVDLIIDDTPE 245 (514)
T ss_pred HHHHHHH--hCceEEEcCCCC
Confidence 4666665 488888888644
No 322
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=54.44 E-value=15 Score=43.91 Aligned_cols=35 Identities=20% Similarity=0.250 Sum_probs=25.9
Q ss_pred CCCCceEEEecCCchhhhHHH-HHHHhcC-CceEEEE
Q psy4724 73 QPKGHAMLITIGGSGAAEVTK-LATFMNE-YVLFEIE 107 (1650)
Q Consensus 73 ~p~G~alLvGvgGSGrqSLtr-LAafi~~-~~~fqIe 107 (1650)
.+++|.+++|..||||.||.+ |+.++.. ..+..|+
T Consensus 142 ~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ie 178 (308)
T TIGR02788 142 ASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIE 178 (308)
T ss_pred hCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEc
Confidence 468999999999999999988 5555542 3344443
No 323
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=54.38 E-value=48 Score=47.56 Aligned_cols=82 Identities=18% Similarity=0.288 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhhchhhccHHHH
Q psy4724 760 AKLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKLE-RAEKLIGGLGGEKTRWSEA 838 (1650)
Q Consensus 760 ~~l~~~e~~l~~~~~~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~-ra~~Li~~L~~E~~rW~~~ 838 (1650)
.+++.+++....+...+...+.+..++...-+....++....++.++++.+++.++..|. ....|..-|..+.+-|+..
T Consensus 476 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~L~p~~gSL~~fL~~~~p~We~t 555 (1201)
T PF12128_consen 476 KRLEQAQEQQNQAQQAVEELQAEEQELRKERDQAEEELRQARRELEELRAQIAELQRQLDPQKGSLLEFLRKNKPGWEQT 555 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHhCCCcHHHH
Confidence 344444444444444444444444444444444455555555555555555555555554 4556778899999999987
Q ss_pred HHH
Q psy4724 839 SAN 841 (1650)
Q Consensus 839 ~~~ 841 (1650)
+..
T Consensus 556 IGK 558 (1201)
T PF12128_consen 556 IGK 558 (1201)
T ss_pred hHh
Confidence 654
No 324
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=54.24 E-value=55 Score=39.92 Aligned_cols=102 Identities=15% Similarity=0.157 Sum_probs=61.2
Q ss_pred ceeehHHHHHHHHHHHHHhcCCCC-c-eEEEecCCchhhhHHH-HHHHhcC-----C-----------------------
Q psy4724 53 DIVTFLYIIQHISRLCRILQQPKG-H-AMLITIGGSGAAEVTK-LATFMNE-----Y----------------------- 101 (1650)
Q Consensus 53 ~lVlF~~ai~Hv~rI~Ril~~p~G-~-alLvGvgGSGrqSLtr-LAafi~~-----~----------------------- 101 (1650)
.|+=.++|.+++.+. ++..|+ | .|+.|.-|+||.+|++ +|.++.. .
T Consensus 24 ~l~Gh~~a~~~L~~a---~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~c~~c~~i~~~~h 100 (351)
T PRK09112 24 RLFGHEEAEAFLAQA---YREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPASPVWRQIAQGAH 100 (351)
T ss_pred hccCcHHHHHHHHHH---HHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCCCHHHHHHHcCCC
Confidence 355566666655554 445554 4 6779999999999987 6666632 0
Q ss_pred -ceEEEEE---------cccCCcchhHHHHHHHHHHhccCCCCCEEEEEecCCcCchhhHHHHHHHHhhhh
Q psy4724 102 -VLFEIEI---------LKTYGLTDWRDDLCRLMKKSGGKDAKPMTFLFSDTQIQNEVFVEHINMLLNTAR 162 (1650)
Q Consensus 102 -~~fqIei---------tk~Yg~~~f~eDLk~l~~~~g~~~~k~~vFl~tD~qI~~E~fLedIN~lL~tge 162 (1650)
+++.|.- .+..++.+.| ++...+.... ..|+.-|+++.|.|-.+. .-.|.||.+=|
T Consensus 101 Pdl~~l~~~~~~~~~~~~~~I~vd~iR-~l~~~l~~~~-~~g~~rVviIDeAd~l~~---~aanaLLk~LE 166 (351)
T PRK09112 101 PNLLHITRPFDEKTGKFKTAITVDEIR-RVGHFLSQTS-GDGNWRIVIIDPADDMNR---NAANAILKTLE 166 (351)
T ss_pred CCEEEeecccccccccccccCCHHHHH-HHHHHhhhcc-ccCCceEEEEEchhhcCH---HHHHHHHHHHh
Confidence 0122210 1234555555 3444444444 467778899999987655 33466776643
No 325
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=54.10 E-value=1.3e+02 Score=33.33 Aligned_cols=83 Identities=22% Similarity=0.291 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhccHHHHHHHHHH
Q psy4724 765 AEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKLERAEKLIGGLGGEKTRWSEASANLSK 844 (1650)
Q Consensus 765 ~e~~l~~~~~~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~~Li~~L~~E~~rW~~~~~~~~~ 844 (1650)
+...|.++++++..+-.++..+...+...+.+++........+......-+..++..+.=+.-...|...+.+.+..++.
T Consensus 15 LKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~~le~ 94 (202)
T PF06818_consen 15 LKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLREKLGQLEA 94 (202)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhhhhhHH
Confidence 33444444444555555555555555555555555555555444433333333333333333333444455555555444
Q ss_pred HHh
Q psy4724 845 ALV 847 (1650)
Q Consensus 845 ~~~ 847 (1650)
.+.
T Consensus 95 El~ 97 (202)
T PF06818_consen 95 ELA 97 (202)
T ss_pred HHH
Confidence 443
No 326
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=54.06 E-value=61 Score=41.98 Aligned_cols=94 Identities=17% Similarity=0.208 Sum_probs=55.6
Q ss_pred cCCeEEEecccccccccchHHHhHHHHhhcCeEEE------EecCe---------eeeecCCeeEEEEeCCCCCCCCccc
Q psy4724 974 TGTAVLLENIQETIDSSLEPVLLKSYYKIQNQLIM------TLNNK---------EIEYNIKFRLYITTRLKNPHYIPEI 1038 (1650)
Q Consensus 974 ~G~~vlie~v~e~~dp~l~p~L~~~~~~~~~~~~i------~ig~~---------~i~~~~~FrL~l~Tk~~np~~~pe~ 1038 (1650)
.|.+|+|.++ +.++|.....|.+-+.. ++..+ ..+.. .-.+..+||++..|...--..+|.+
T Consensus 175 ~gG~L~IdEI-~~L~~~~q~~LL~~Le~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paL 251 (531)
T TIGR02902 175 HGGVLFIDEI-GELHPVQMNKLLKVLED--RKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPAL 251 (531)
T ss_pred CCcEEEEech-hhCCHHHHHHHHHHHHh--CeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHH
Confidence 6889999999 78888877776654321 11111 11111 1135678999988765333678999
Q ss_pred ccceEEEEeeeC-hhhHHHHHHHHHHHhhCCcHH
Q psy4724 1039 LTKITLINFMIT-PQGLQNQLLGIVVAKEKPDLE 1071 (1650)
Q Consensus 1039 ~~~~tvinf~vt-~~gLe~qlL~~vv~~e~peLe 1071 (1650)
.+|+..|.|..- .+.+ ..++...++.+...++
T Consensus 252 rsR~~~I~f~pL~~eei-~~Il~~~a~k~~i~is 284 (531)
T TIGR02902 252 RSRCVEIFFRPLLDEEI-KEIAKNAAEKIGINLE 284 (531)
T ss_pred hhhhheeeCCCCCHHHH-HHHHHHHHHHcCCCcC
Confidence 999988888643 3333 2334444443333333
No 327
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=54.05 E-value=39 Score=40.58 Aligned_cols=25 Identities=20% Similarity=0.259 Sum_probs=19.8
Q ss_pred CCceEEEecCCchhhhH-HHHHHHhc
Q psy4724 75 KGHAMLITIGGSGAAEV-TKLATFMN 99 (1650)
Q Consensus 75 ~G~alLvGvgGSGrqSL-trLAafi~ 99 (1650)
..-.+|||++||||.|+ .+||.++.
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~~l~ 139 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAHKYK 139 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHH
Confidence 34678999999999977 56777775
No 328
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=53.82 E-value=9.3 Score=42.98 Aligned_cols=26 Identities=19% Similarity=0.249 Sum_probs=21.1
Q ss_pred CCCceEEEecCCchhhhHHHHHHHhc
Q psy4724 74 PKGHAMLITIGGSGAAEVTKLATFMN 99 (1650)
Q Consensus 74 p~G~alLvGvgGSGrqSLtrLAafi~ 99 (1650)
|+.+..|+|..||||.||.|+-+=+.
T Consensus 26 ~G~~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 26 AGEFVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44467899999999999999877553
No 329
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=53.77 E-value=1.1e+02 Score=33.77 Aligned_cols=86 Identities=14% Similarity=0.190 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhhhch
Q psy4724 761 KLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRD------ELAQKSKDKKELEDQIELCKQKLERAEK----LIGGLGG 830 (1650)
Q Consensus 761 ~l~~~e~~l~~~~~~L~~~~~~l~~~~~~l~~l~~------~~~~~~~e~~~l~~~~~~~~~rl~ra~~----Li~~L~~ 830 (1650)
.....+..+...+++++..+.++.+++++++..+. +-....++.+.|+.+.+..+..+..... .+..+..
T Consensus 63 ~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~~eR~~~l~~l~~l~~~~~~l~~el~~~~~~Dp~~i~~~~~ 142 (188)
T PF03962_consen 63 AKQKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREESEEREELLEELEELKKELKELKKELEKYSENDPEKIEKLKE 142 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 34444555555555555555555555555555543 3344456666666666666666653222 3444444
Q ss_pred hhccHHHHHHHHHHHH
Q psy4724 831 EKTRWSEASANLSKAL 846 (1650)
Q Consensus 831 E~~rW~~~~~~~~~~~ 846 (1650)
+..++...++.....+
T Consensus 143 ~~~~~~~~anrwTDNI 158 (188)
T PF03962_consen 143 EIKIAKEAANRWTDNI 158 (188)
T ss_pred HHHHHHHHHHHHHhhH
Confidence 4455555554444443
No 330
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=53.75 E-value=1.9e+02 Score=27.77 Aligned_cols=29 Identities=24% Similarity=0.338 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4724 792 ALRDELAQKSKDKKELEDQIELCKQKLER 820 (1650)
Q Consensus 792 ~l~~~~~~~~~e~~~l~~~~~~~~~rl~r 820 (1650)
.|..+++.+..+.++|+.--..+..||..
T Consensus 50 rLa~eLD~~~ar~~~Le~~~~Evs~rL~~ 78 (89)
T PF13747_consen 50 RLAQELDQAEARANRLEEANREVSRRLDS 78 (89)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333
No 331
>KOG0977|consensus
Probab=53.63 E-value=1.4e+02 Score=38.21 Aligned_cols=69 Identities=19% Similarity=0.259 Sum_probs=44.7
Q ss_pred HHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4724 749 DRVIKIVGPKKAKLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQK 817 (1650)
Q Consensus 749 ~~v~~~v~P~~~~l~~~e~~l~~~~~~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~r 817 (1650)
+++-.++.+++.+++++...+.++.......+.++......+..+++++.-....+..++.+...+...
T Consensus 109 a~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~e 177 (546)
T KOG0977|consen 109 AKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAE 177 (546)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 444566666666777777666666666666666666666666666666666666666666666544433
No 332
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=53.42 E-value=19 Score=43.26 Aligned_cols=39 Identities=21% Similarity=0.209 Sum_probs=29.9
Q ss_pred CCCceEEEecCCchhhhHHH-HHHHh----cCCceEEEEEcccC
Q psy4724 74 PKGHAMLITIGGSGAAEVTK-LATFM----NEYVLFEIEILKTY 112 (1650)
Q Consensus 74 p~G~alLvGvgGSGrqSLtr-LAafi----~~~~~fqIeitk~Y 112 (1650)
.++|.+++|..||||.||.+ |+.++ .+..++.||-+.-|
T Consensus 147 ~~~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~El 190 (319)
T PRK13894 147 AHRNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEI 190 (319)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCCcc
Confidence 68999999999999999987 55554 24567777766544
No 333
>PF15112 DUF4559: Domain of unknown function (DUF4559)
Probab=53.28 E-value=1.7e+02 Score=34.31 Aligned_cols=163 Identities=18% Similarity=0.160 Sum_probs=89.5
Q ss_pred HHHHHHhhhhH--------HHHHHHhhCCCCCCCCccCCcccHHHHHHHHHhhhcCCCCCchhhHhHhhcCccchhhHHH
Q psy4724 675 KLLFSLCLFHA--------VVQERKQYGPLGWNIPYEFNLSDLNISMKQLQMFLNDYTTIPFDALIYLTASIPFQVLAME 746 (1650)
Q Consensus 675 ~~l~~L~~fHa--------vv~ER~kf~~lG~ni~y~Fn~sDl~~~~~~l~~~l~~~~~~p~~~l~~~~~s~a~Wv~A~~ 746 (1650)
+|+..--+|+. ||.-|..-- -+---.|++..++....+|++++..-.-+|. ....++. |.
T Consensus 126 Nlin~Cd~F~~~d~~~v~eVI~~RN~~M---HS~emkvs~~wm~~~~~~i~nll~~f~~ipe---~~~a~~~------Ie 193 (307)
T PF15112_consen 126 NLINSCDHFKKYDRKKVREVIKCRNEIM---HSSEMKVSSQWMRDFQMKIQNLLNEFRNIPE---IVAAGSR------IE 193 (307)
T ss_pred HHHHHhhccccccHHHHHHHHHHHHHhh---cCcccccCHHHHHHHHHHHHHHHHHhccChH---HHHHHHH------HH
Confidence 45555566777 888887632 2334467788888888889888885555665 1111111 11
Q ss_pred HHHH-HHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4724 747 VYDR-VIKIVGPKKAKLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKLERAEKLI 825 (1650)
Q Consensus 747 ~Y~~-v~~~v~P~~~~l~~~e~~l~~~~~~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~~Li 825 (1650)
++-. -...-.|...+.+..+.........-+..+-+.+.++++++++-.++++.....++.-+.++....=|..=+.|-
T Consensus 194 ~ll~~d~~v~~~~~d~~Dg~~~~~~~~~~~~~i~e~e~e~Lke~lqel~~~~e~~~~~~ee~~~~l~~~~~fL~~NkDL~ 273 (307)
T PF15112_consen 194 QLLTSDWAVHIPEEDQRDGCESETDVYLSESQILEIEMELLKEKLQELYLQAEEQEVLPEEDSKRLEVLKEFLRNNKDLR 273 (307)
T ss_pred HHHhhhhhhcCchhhccchhhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHhcHHHH
Confidence 1110 112333444555544444444333333344455556666666655555544444555555666666666666666
Q ss_pred hhhchhhccHHHHHHHHHHHHhhchhHH
Q psy4724 826 GGLGGEKTRWSEASANLSKALVNCIGDI 853 (1650)
Q Consensus 826 ~~L~~E~~rW~~~~~~~~~~~~~l~Gd~ 853 (1650)
.+|+.|- ..++++..+...+-+|+
T Consensus 274 ~~l~~e~----qkL~~l~~k~~~~~~~v 297 (307)
T PF15112_consen 274 SNLQEEL----QKLDSLQTKHQKLESDV 297 (307)
T ss_pred HHHHHHH----HHHHHHHHHhcchhhhh
Confidence 6776665 55666666666665543
No 334
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=53.22 E-value=1.8e+02 Score=33.60 Aligned_cols=11 Identities=36% Similarity=0.634 Sum_probs=5.2
Q ss_pred hHHHHHHHHHH
Q psy4724 963 TLLRTLERAIR 973 (1650)
Q Consensus 963 ~~~~~le~ai~ 973 (1650)
.+.+.|..|++
T Consensus 220 ~~~~~i~~ai~ 230 (251)
T PF11932_consen 220 SYRREIRKAIR 230 (251)
T ss_pred HHHHHHHHHHH
Confidence 44444544444
No 335
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=53.18 E-value=2.9e+02 Score=31.54 Aligned_cols=78 Identities=21% Similarity=0.222 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhccHHHHHHHHHHH
Q psy4724 768 DYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKLERAEKLIGGLGGEKTRWSEASANLSKA 845 (1650)
Q Consensus 768 ~l~~~~~~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~~Li~~L~~E~~rW~~~~~~~~~~ 845 (1650)
.++.....|.+.+.+...+...-...-+++....+++..|+..+...+.-..+...-+.-+-+|..+=...++.+...
T Consensus 26 ~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 26 SLENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444444444444455555555666666666666666667777777777777777766554
No 336
>KOG0243|consensus
Probab=52.99 E-value=1.9e+02 Score=39.62 Aligned_cols=83 Identities=18% Similarity=0.257 Sum_probs=54.1
Q ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4724 746 EVYDRVIKIVGPKKAKLAEAEADYAVQMEKLNSKRAQLA-------TVLGKLQALRDELAQKSKDKKELEDQIELCKQKL 818 (1650)
Q Consensus 746 ~~Y~~v~~~v~P~~~~l~~~e~~l~~~~~~L~~~~~~l~-------~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl 818 (1650)
.+|..--.+..-+...+++++.+++..+.++...++.+. .+.+++..++..++....+...++.++..++.+|
T Consensus 434 e~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l 513 (1041)
T KOG0243|consen 434 ERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQNKNKELESLKEELQQAKATL 513 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444333233333344444555555555555544444444 7888888888888888888888888888888888
Q ss_pred HHHHHHHhhh
Q psy4724 819 ERAEKLIGGL 828 (1650)
Q Consensus 819 ~ra~~Li~~L 828 (1650)
...+.+++.+
T Consensus 514 ~~~e~ii~~~ 523 (1041)
T KOG0243|consen 514 KEEEEIISQQ 523 (1041)
T ss_pred HHHHHHHHHH
Confidence 8777777765
No 337
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=52.96 E-value=2.6e+02 Score=32.90 Aligned_cols=15 Identities=13% Similarity=0.027 Sum_probs=8.9
Q ss_pred hHhhcCccchhhHHH
Q psy4724 732 IYLTASIPFQVLAME 746 (1650)
Q Consensus 732 ~~~~~s~a~Wv~A~~ 746 (1650)
.+.+.|..-|.-|+-
T Consensus 45 ~f~~iss~gwff~i~ 59 (401)
T PF06785_consen 45 VFSIISSLGWFFAIG 59 (401)
T ss_pred ehHHHHHhHHHHHhh
Confidence 334455557877764
No 338
>PHA02562 46 endonuclease subunit; Provisional
Probab=52.84 E-value=2.6e+02 Score=36.52 Aligned_cols=26 Identities=15% Similarity=0.213 Sum_probs=23.1
Q ss_pred CCceEEEecCCchhhhHHHHHHHhcC
Q psy4724 75 KGHAMLITIGGSGAAEVTKLATFMNE 100 (1650)
Q Consensus 75 ~G~alLvGvgGSGrqSLtrLAafi~~ 100 (1650)
.|-.+++|..||||.||...-+|..+
T Consensus 27 ~g~~~i~G~NG~GKStll~aI~~~l~ 52 (562)
T PHA02562 27 VKKTLITGKNGAGKSTMLEALTFALF 52 (562)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHc
Confidence 58999999999999999988888763
No 339
>KOG3091|consensus
Probab=52.84 E-value=80 Score=39.12 Aligned_cols=67 Identities=12% Similarity=0.117 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhch
Q psy4724 764 EAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKLERAEKLIGGLGG 830 (1650)
Q Consensus 764 ~~e~~l~~~~~~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~~Li~~L~~ 830 (1650)
.+..+++...+....-+..|..+.+++.+|+........++++++....+++.|+-|.-.-+..|..
T Consensus 338 dL~~R~K~Q~q~~~~~r~ri~~i~e~v~eLqk~~ad~~~KI~~~k~r~~~Ls~RiLRv~ikqeilr~ 404 (508)
T KOG3091|consen 338 DLRQRLKVQDQEVKQHRIRINAIGERVTELQKHHADAVAKIEEAKNRHVELSHRILRVMIKQEILRK 404 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444555556666777778888889999999888889999999999999999888887777776653
No 340
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=52.77 E-value=1.7e+02 Score=35.00 Aligned_cols=80 Identities=26% Similarity=0.312 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhhhchhhccHH
Q psy4724 761 KLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKLER----AEKLIGGLGGEKTRWS 836 (1650)
Q Consensus 761 ~l~~~e~~l~~~~~~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~r----a~~Li~~L~~E~~rW~ 836 (1650)
++.++..........+...+.++..+...+..|+.+++........|+..+..++.++.. ...-|..|..|...=.
T Consensus 196 k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~ 275 (312)
T PF00038_consen 196 KLEELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELR 275 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHH
Confidence 444455555555555666666666666666666666666666666666666666544432 2334444444443333
Q ss_pred HHHH
Q psy4724 837 EASA 840 (1650)
Q Consensus 837 ~~~~ 840 (1650)
..+.
T Consensus 276 ~~~~ 279 (312)
T PF00038_consen 276 EEMA 279 (312)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 3333
No 341
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=52.77 E-value=60 Score=41.09 Aligned_cols=100 Identities=16% Similarity=0.262 Sum_probs=54.1
Q ss_pred ceeehHHHHHHHHHHHHHhcCC-CCc-eEEEecCCchhhhHHHHHHHh--cC-----------------------CceEE
Q psy4724 53 DIVTFLYIIQHISRLCRILQQP-KGH-AMLITIGGSGAAEVTKLATFM--NE-----------------------YVLFE 105 (1650)
Q Consensus 53 ~lVlF~~ai~Hv~rI~Ril~~p-~G~-alLvGvgGSGrqSLtrLAafi--~~-----------------------~~~fq 105 (1650)
++|--++++.++.+. ++.. -+| .|+.|..|+||.++++.-|-- |. .++..
T Consensus 18 diiGq~~~v~~L~~~---i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d~~~ 94 (451)
T PRK06305 18 EILGQDAVVAVLKNA---LRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLDVLE 94 (451)
T ss_pred HhcCcHHHHHHHHHH---HHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCceEE
Confidence 455556666654444 3332 256 578999999999999876432 21 12333
Q ss_pred EEEcccCCcchhHHHHHHHHHHhccCCCCCEEEEEecCCcCchhhHHHHHHHHhh
Q psy4724 106 IEILKTYGLTDWRDDLCRLMKKSGGKDAKPMTFLFSDTQIQNEVFVEHINMLLNT 160 (1650)
Q Consensus 106 Ieitk~Yg~~~f~eDLk~l~~~~g~~~~k~~vFl~tD~qI~~E~fLedIN~lL~t 160 (1650)
+.-....|..+.++-...+.... ..+...++++.|.+-... +-.|.||.+
T Consensus 95 i~g~~~~gid~ir~i~~~l~~~~--~~~~~kvvIIdead~lt~---~~~n~LLk~ 144 (451)
T PRK06305 95 IDGASHRGIEDIRQINETVLFTP--SKSRYKIYIIDEVHMLTK---EAFNSLLKT 144 (451)
T ss_pred eeccccCCHHHHHHHHHHHHhhh--hcCCCEEEEEecHHhhCH---HHHHHHHHH
Confidence 32222344555554232222222 235667888888654332 245666655
No 342
>KOG4364|consensus
Probab=52.72 E-value=15 Score=46.28 Aligned_cols=7 Identities=43% Similarity=0.254 Sum_probs=3.5
Q ss_pred cCCCcCh
Q psy4724 1377 LSAGSDP 1383 (1650)
Q Consensus 1377 ls~g~DP 1383 (1650)
++||.|-
T Consensus 95 ~~p~~~~ 101 (811)
T KOG4364|consen 95 LSPLVDE 101 (811)
T ss_pred cCCcccc
Confidence 4455553
No 343
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=52.60 E-value=48 Score=40.12 Aligned_cols=92 Identities=14% Similarity=0.126 Sum_probs=55.1
Q ss_pred HHHHHhcCCC-Cce-EEEecCCchhhhHHH-HHHHh-cCC----------------------ceEEEEEc-ccCCcchhH
Q psy4724 66 RLCRILQQPK-GHA-MLITIGGSGAAEVTK-LATFM-NEY----------------------VLFEIEIL-KTYGLTDWR 118 (1650)
Q Consensus 66 rI~Ril~~p~-G~a-lLvGvgGSGrqSLtr-LAafi-~~~----------------------~~fqIeit-k~Yg~~~f~ 118 (1650)
++.+.+...+ .|+ ||.|..|+||.++++ +|..+ |.. ++..+... ++.++.+.|
T Consensus 17 ~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i~~~~~~i~id~ir 96 (329)
T PRK08058 17 MLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLVAPDGQSIKKDQIR 96 (329)
T ss_pred HHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEeccccccCCHHHHH
Confidence 3444454433 588 899999999999886 44444 321 34444433 345666666
Q ss_pred HHHHHHHHHhccCCCCCEEEEEecCCcCchhhHHHHHHHHhhhh
Q psy4724 119 DDLCRLMKKSGGKDAKPMTFLFSDTQIQNEVFVEHINMLLNTAR 162 (1650)
Q Consensus 119 eDLk~l~~~~g~~~~k~~vFl~tD~qI~~E~fLedIN~lL~tge 162 (1650)
+-+..+... . ..+..-|+++.+.+-.+. +--|.||.+=|
T Consensus 97 ~l~~~~~~~-~-~~~~~kvviI~~a~~~~~---~a~NaLLK~LE 135 (329)
T PRK08058 97 YLKEEFSKS-G-VESNKKVYIIEHADKMTA---SAANSLLKFLE 135 (329)
T ss_pred HHHHHHhhC-C-cccCceEEEeehHhhhCH---HHHHHHHHHhc
Confidence 554443333 3 356667888988754322 35588887743
No 344
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=52.51 E-value=14 Score=40.27 Aligned_cols=29 Identities=14% Similarity=0.173 Sum_probs=22.6
Q ss_pred CCCCceEEEecCCchhhhHHHHHHHhcCC
Q psy4724 73 QPKGHAMLITIGGSGAAEVTKLATFMNEY 101 (1650)
Q Consensus 73 ~p~G~alLvGvgGSGrqSLtrLAafi~~~ 101 (1650)
+++-...++|+.||||.||.+..+-+.+.
T Consensus 1 ~~ge~i~l~G~sGsGKSTl~~~la~~l~~ 29 (176)
T PRK09825 1 MAGESYILMGVSGSGKSLIGSKIAALFSA 29 (176)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 35557889999999999999876655443
No 345
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=52.49 E-value=9.2 Score=39.73 Aligned_cols=19 Identities=26% Similarity=0.319 Sum_probs=16.5
Q ss_pred eEEEecCCchhhhHHHHHH
Q psy4724 78 AMLITIGGSGAAEVTKLAT 96 (1650)
Q Consensus 78 alLvGvgGSGrqSLtrLAa 96 (1650)
.+++|+.||||.|+++--+
T Consensus 2 ii~~G~pgsGKSt~a~~l~ 20 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLA 20 (143)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4799999999999987754
No 346
>PRK00300 gmk guanylate kinase; Provisional
Probab=52.42 E-value=11 Score=42.17 Aligned_cols=28 Identities=14% Similarity=0.064 Sum_probs=22.3
Q ss_pred CCCCceEEEecCCchhhhHHHHHHHhcC
Q psy4724 73 QPKGHAMLITIGGSGAAEVTKLATFMNE 100 (1650)
Q Consensus 73 ~p~G~alLvGvgGSGrqSLtrLAafi~~ 100 (1650)
.|+--..|+|..||||.||+++.+-..+
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 4566788999999999999887765543
No 347
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=52.38 E-value=1.4e+02 Score=30.30 Aligned_cols=14 Identities=7% Similarity=0.100 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHhh
Q psy4724 835 WSEASANLSKALVN 848 (1650)
Q Consensus 835 W~~~~~~~~~~~~~ 848 (1650)
....+.+++.++..
T Consensus 73 L~~el~~l~~ry~t 86 (120)
T PF12325_consen 73 LEQELEELQQRYQT 86 (120)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444455544443
No 348
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=52.31 E-value=2.8e+02 Score=32.74 Aligned_cols=14 Identities=36% Similarity=0.373 Sum_probs=5.8
Q ss_pred HHhhhchhhccHHH
Q psy4724 824 LIGGLGGEKTRWSE 837 (1650)
Q Consensus 824 Li~~L~~E~~rW~~ 837 (1650)
+...+..-+.+|..
T Consensus 124 ~~~~~~~~~~~l~~ 137 (302)
T PF10186_consen 124 LQNELEERKQRLSQ 137 (302)
T ss_pred HHHHHHHHHHHHHH
Confidence 33344334444444
No 349
>PRK04406 hypothetical protein; Provisional
Probab=51.66 E-value=1.1e+02 Score=28.32 Aligned_cols=51 Identities=24% Similarity=0.287 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4724 771 VQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKLERA 821 (1650)
Q Consensus 771 ~~~~~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra 821 (1650)
..++++...+.+++-.+..|+.|.+...+..++.+.|+.++..+..|+..+
T Consensus 8 ~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~ 58 (75)
T PRK04406 8 QLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKNM 58 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344555666666666666677777777777777777777777776666543
No 350
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=51.60 E-value=51 Score=40.97 Aligned_cols=50 Identities=12% Similarity=0.135 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4724 760 AKLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELED 809 (1650)
Q Consensus 760 ~~l~~~e~~l~~~~~~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~ 809 (1650)
.+|.+.+...++.+++|+..+.+++.+..+.+.++.++++...+.+.|+.
T Consensus 69 SALteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~ 118 (475)
T PRK13729 69 HATTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAE 118 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444433333333333
No 351
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=51.54 E-value=78 Score=28.85 Aligned_cols=68 Identities=16% Similarity=0.170 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhccHHHHHHHHHHHHhhchhHHHHHHHHHHh
Q psy4724 783 LATVLGKLQALRDELAQKSKDKKELEDQIELCKQKLERAEKLIGGLGGEKTRWSEASANLSKALVNCIGDILICAGIITY 862 (1650)
Q Consensus 783 l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~~Li~~L~~E~~rW~~~~~~~~~~~~~l~Gd~ll~aa~i~Y 862 (1650)
+.++++++...+...+........++..-+..+..+..... ++.+++.....+.| ++..|+|+.
T Consensus 1 ~~~i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~--------------~l~~I~~n~kW~~r--~iiGaiI~~ 64 (71)
T PF10779_consen 1 LQDIKEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNK--------------QLEKIKSNTKWIWR--TIIGAIITA 64 (71)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHH--HHHHHHHHH
Q ss_pred cCCC
Q psy4724 863 LGAF 866 (1650)
Q Consensus 863 ~G~f 866 (1650)
++.|
T Consensus 65 i~~~ 68 (71)
T PF10779_consen 65 IIYL 68 (71)
T ss_pred HHHH
No 352
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=51.44 E-value=14 Score=38.95 Aligned_cols=24 Identities=21% Similarity=0.219 Sum_probs=19.1
Q ss_pred eEEEecCCchhhhHHHHHHHhcCC
Q psy4724 78 AMLITIGGSGAAEVTKLATFMNEY 101 (1650)
Q Consensus 78 alLvGvgGSGrqSLtrLAafi~~~ 101 (1650)
.+|+|..||||.|+++..+-..+.
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~ 25 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGA 25 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCC
Confidence 478999999999999876555444
No 353
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=51.44 E-value=3.6 Score=47.93 Aligned_cols=58 Identities=14% Similarity=0.101 Sum_probs=39.6
Q ss_pred HHHHHHHHHhhhhccCCCCccchhHhHHHHHHHHHHHHhcCCccchhhHHHhhHHHHHHhhhcc
Q psy4724 205 TEKINQYIVDYNTQNSNKPIDIVTFLYIIQHISRLCRILQQPKGHAMLITIGTYRVERKIALGR 268 (1650)
Q Consensus 205 ~e~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~f~~~~~~l~~ 268 (1650)
.+.+..+++.+++++ +|++.+++|.| ..++.+++.+|+..++++|.|+..|+..+|..
T Consensus 147 ~~~~~~~F~~rvr~n----LHivl~~sp~~--~~~r~~~~~fPaL~~~ctIdW~~~W~~eaL~~ 204 (268)
T PF12780_consen 147 RESLYEFFIERVRKN----LHIVLCMSPVG--PNFRDRCRSFPALVNCCTIDWFDPWPEEALLS 204 (268)
T ss_dssp HHHHHHHHHHHHCCC----EEEEEEESTTT--TCCCHHHHHHCCHHHHSEEEEEES--HHHHHH
T ss_pred hHHHHHHHHHHHHhh----eeEEEEECCCC--chHHHHHHhCcchhcccEEEeCCcCCHHHHHH
Confidence 355677887777766 45667777765 33566777888999999998888887764443
No 354
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=51.37 E-value=1.3e+02 Score=32.07 Aligned_cols=27 Identities=15% Similarity=0.214 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4724 760 AKLAEAEADYAVQMEKLNSKRAQLATV 786 (1650)
Q Consensus 760 ~~l~~~e~~l~~~~~~L~~~~~~l~~~ 786 (1650)
.++..++.++.....+|.....+|..+
T Consensus 20 ~~~~~~~~e~~~~k~ql~~~d~~i~~L 46 (155)
T PF06810_consen 20 AKVDKVKEERDNLKTQLKEADKQIKDL 46 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444443333333
No 355
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=51.18 E-value=25 Score=44.13 Aligned_cols=54 Identities=28% Similarity=0.365 Sum_probs=34.3
Q ss_pred CCCceEEEecCCchhhhHH-HHHHHhc--CCceEEEEEcccCCcchhHHHHHHHHHHhc
Q psy4724 74 PKGHAMLITIGGSGAAEVT-KLATFMN--EYVLFEIEILKTYGLTDWRDDLCRLMKKSG 129 (1650)
Q Consensus 74 p~G~alLvGvgGSGrqSLt-rLAafi~--~~~~fqIeitk~Yg~~~f~eDLk~l~~~~g 129 (1650)
+.+..++||++||||.|++ +||.++. |+.+.-|.. -.|... -.+-|+.+....|
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~-D~~R~a-a~eQL~~la~~~g 150 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAA-DTYRPA-AYDQLKQLAEKIG 150 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecC-CCCCHH-HHHHHHHHHHHcC
Confidence 3467999999999999875 7888886 344443322 234332 2455656555555
No 356
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=51.18 E-value=2.5e+02 Score=27.64 Aligned_cols=25 Identities=28% Similarity=0.387 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4724 787 LGKLQALRDELAQKSKDKKELEDQI 811 (1650)
Q Consensus 787 ~~~l~~l~~~~~~~~~e~~~l~~~~ 811 (1650)
+..+..|+.+-+..++.+..|+.++
T Consensus 43 ~~~l~~L~~q~~s~~qr~~eLqaki 67 (107)
T PF09304_consen 43 RNALQSLQAQNASRNQRIAELQAKI 67 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 357
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=51.12 E-value=20 Score=45.71 Aligned_cols=41 Identities=17% Similarity=0.316 Sum_probs=30.4
Q ss_pred HHHHHHHhcCCCCceEEEecCCchhhhHHH-HHHHhcCCceE
Q psy4724 64 ISRLCRILQQPKGHAMLITIGGSGAAEVTK-LATFMNEYVLF 104 (1650)
Q Consensus 64 v~rI~Ril~~p~G~alLvGvgGSGrqSLtr-LAafi~~~~~f 104 (1650)
+.+.++-+..++--.+|+|+.|+||.||++ ||..+-.|-++
T Consensus 92 l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y 133 (644)
T PRK15455 92 FRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMERVPIY 133 (644)
T ss_pred HHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHHhCcce
Confidence 334557777778889999999999999976 55555566433
No 358
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=51.05 E-value=21 Score=46.01 Aligned_cols=61 Identities=23% Similarity=0.400 Sum_probs=43.5
Q ss_pred cCCCCceEEEecCCchhhhHHHHHHHhcCCceEEEEEcccCCcchhHH--------HHHHHHHHhccCCCCCEEEEEec
Q psy4724 72 QQPKGHAMLITIGGSGAAEVTKLATFMNEYVLFEIEILKTYGLTDWRD--------DLCRLMKKSGGKDAKPMTFLFSD 142 (1650)
Q Consensus 72 ~~p~G~alLvGvgGSGrqSLtrLAafi~~~~~fqIeitk~Yg~~~f~e--------DLk~l~~~~g~~~~k~~vFl~tD 142 (1650)
+.|+|. ||||+.|+||..|+|.-|=-++--.|.|. -++|-| -++-++.+|. ++.| |.+|=|
T Consensus 181 kiPkGv-lLvGpPGTGKTLLAkAvAgEA~VPFf~iS------GS~FVemfVGvGAsRVRdLF~qAk--k~aP-~IIFID 249 (596)
T COG0465 181 KIPKGV-LLVGPPGTGKTLLAKAVAGEAGVPFFSIS------GSDFVEMFVGVGASRVRDLFEQAK--KNAP-CIIFID 249 (596)
T ss_pred ccccce-eEecCCCCCcHHHHHHHhcccCCCceecc------chhhhhhhcCCCcHHHHHHHHHhh--ccCC-CeEEEe
Confidence 678875 59999999999999999999999989883 333333 1234577775 5666 334433
No 359
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=50.96 E-value=18 Score=37.54 Aligned_cols=76 Identities=9% Similarity=0.070 Sum_probs=44.7
Q ss_pred cCCCCceEEEecCCchhhhHHHHHHHhcCC--ceEEEEEcccCCcchhHHHHHHHHHHhccCCCCCEEEEEecCCcCchh
Q psy4724 72 QQPKGHAMLITIGGSGAAEVTKLATFMNEY--VLFEIEILKTYGLTDWRDDLCRLMKKSGGKDAKPMTFLFSDTQIQNEV 149 (1650)
Q Consensus 72 ~~p~G~alLvGvgGSGrqSLtrLAafi~~~--~~fqIeitk~Yg~~~f~eDLk~l~~~~g~~~~k~~vFl~tD~qI~~E~ 149 (1650)
..-..+.||.|..||||..++|.-....+. ..|.+.-..... ..++.++. +-++++.|-+-.+..
T Consensus 18 a~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~--------~~~l~~a~-----~gtL~l~~i~~L~~~ 84 (138)
T PF14532_consen 18 AKSSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP--------AELLEQAK-----GGTLYLKNIDRLSPE 84 (138)
T ss_dssp HCSSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC--------HHHHHHCT-----TSEEEEECGCCS-HH
T ss_pred hCCCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc--------HHHHHHcC-----CCEEEECChHHCCHH
Confidence 456889999999999999987755554443 122221111111 23455442 236778888877777
Q ss_pred hHHHHHHHHhh
Q psy4724 150 FVEHINMLLNT 160 (1650)
Q Consensus 150 fLedIN~lL~t 160 (1650)
.-..+=.+|..
T Consensus 85 ~Q~~L~~~l~~ 95 (138)
T PF14532_consen 85 AQRRLLDLLKR 95 (138)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 76666566654
No 360
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=50.94 E-value=2.1e+02 Score=39.04 Aligned_cols=90 Identities=16% Similarity=0.171 Sum_probs=58.0
Q ss_pred CCeEEEecccccccccchHHHhHHHHhhcCeEEEEecCeeeeecCCeeEEEEeCCCCCCCCcccccceEEEEee-eChhh
Q psy4724 975 GTAVLLENIQETIDSSLEPVLLKSYYKIQNQLIMTLNNKEIEYNIKFRLYITTRLKNPHYIPEILTKITLINFM-ITPQG 1053 (1650)
Q Consensus 975 G~~vlie~v~e~~dp~l~p~L~~~~~~~~~~~~i~ig~~~i~~~~~FrL~l~Tk~~np~~~pe~~~~~tvinf~-vt~~g 1053 (1650)
.+.+||+++ +.|...-...|.|-+.. ..+...|+|+|... ..+.+-|.+|+.++.|. ++.+.
T Consensus 121 ~KV~IIDEa-d~lt~~a~NaLLK~LEE---------------pP~~~~fIl~tt~~-~kLl~TIrSRc~~v~F~~l~~~~ 183 (824)
T PRK07764 121 YKIFIIDEA-HMVTPQGFNALLKIVEE---------------PPEHLKFIFATTEP-DKVIGTIRSRTHHYPFRLVPPEV 183 (824)
T ss_pred ceEEEEech-hhcCHHHHHHHHHHHhC---------------CCCCeEEEEEeCCh-hhhhHHHHhheeEEEeeCCCHHH
Confidence 357788888 67766555555554322 34456677787433 24677899999999999 45666
Q ss_pred HHHHHHHHHHHhhCCcHHHHHHHHHHHHH
Q psy4724 1054 LQNQLLGIVVAKEKPDLETKKNELIIESA 1082 (1650)
Q Consensus 1054 Le~qlL~~vv~~e~peLe~~~~~l~~~~~ 1082 (1650)
|.+. |..+++.|.-.++..-..++....
T Consensus 184 l~~~-L~~il~~EGv~id~eal~lLa~~s 211 (824)
T PRK07764 184 MRGY-LERICAQEGVPVEPGVLPLVIRAG 211 (824)
T ss_pred HHHH-HHHHHHHcCCCCCHHHHHHHHHHc
Confidence 6544 456667777666666555555543
No 361
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=50.80 E-value=41 Score=41.53 Aligned_cols=24 Identities=25% Similarity=0.332 Sum_probs=20.1
Q ss_pred CceEEEecCCchhhhH-HHHHHHhc
Q psy4724 76 GHAMLITIGGSGAAEV-TKLATFMN 99 (1650)
Q Consensus 76 G~alLvGvgGSGrqSL-trLAafi~ 99 (1650)
+..+|||+.|+||.|. ++||++..
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~~~ 199 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAIYG 199 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5899999999999976 56887764
No 362
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=50.74 E-value=11 Score=42.52 Aligned_cols=34 Identities=15% Similarity=-0.095 Sum_probs=24.9
Q ss_pred CCCceEEEecCCchhhhHHHHHHHhcCCceEEEE
Q psy4724 74 PKGHAMLITIGGSGAAEVTKLATFMNEYVLFEIE 107 (1650)
Q Consensus 74 p~G~alLvGvgGSGrqSLtrLAafi~~~~~fqIe 107 (1650)
|+....|+|..||||.||.|+.+=+..-+-=+|.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~ 60 (220)
T cd03263 27 KGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAY 60 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE
Confidence 4447889999999999999998866433333343
No 363
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=50.55 E-value=59 Score=41.18 Aligned_cols=93 Identities=12% Similarity=0.223 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHhcCCCC---ceEEEecCCchhhhHHHHHHH-h----cCCceEEEEEcccCCcchhHHHHHHHHHHhc-c
Q psy4724 60 IIQHISRLCRILQQPKG---HAMLITIGGSGAAEVTKLATF-M----NEYVLFEIEILKTYGLTDWRDDLCRLMKKSG-G 130 (1650)
Q Consensus 60 ai~Hv~rI~Ril~~p~G---~alLvGvgGSGrqSLtrLAaf-i----~~~~~fqIeitk~Yg~~~f~eDLk~l~~~~g-~ 130 (1650)
|...+.+++ ..|++ ..+|.|..|+||..|.+-.+. + .++.+.-+ +..+|..++...+.... .
T Consensus 126 A~~aa~~~a---~~~~~~~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv------~~~~f~~~~~~~l~~~~~~ 196 (450)
T PRK14087 126 AFIAVQTVS---KNPGISYNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYM------SGDEFARKAVDILQKTHKE 196 (450)
T ss_pred HHHHHHHHH---hCcCcccCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEE------EHHHHHHHHHHHHHHhhhH
Confidence 444444443 45543 478999999999999987665 1 24555533 23455555433322210 0
Q ss_pred ------CCCCCEEEEEecCCcCc------hhhHHHHHHHHhhh
Q psy4724 131 ------KDAKPMTFLFSDTQIQN------EVFVEHINMLLNTA 161 (1650)
Q Consensus 131 ------~~~k~~vFl~tD~qI~~------E~fLedIN~lL~tg 161 (1650)
.-...-++++.|-|... |.|..-+|.+...|
T Consensus 197 ~~~~~~~~~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~ 239 (450)
T PRK14087 197 IEQFKNEICQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIEND 239 (450)
T ss_pred HHHHHHHhccCCEEEEeccccccCCHHHHHHHHHHHHHHHHcC
Confidence 01234578889987653 45666667776554
No 364
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=50.46 E-value=11 Score=42.26 Aligned_cols=26 Identities=12% Similarity=0.238 Sum_probs=21.6
Q ss_pred CCCceEEEecCCchhhhHHHHHHHhc
Q psy4724 74 PKGHAMLITIGGSGAAEVTKLATFMN 99 (1650)
Q Consensus 74 p~G~alLvGvgGSGrqSLtrLAafi~ 99 (1650)
|+-+..|+|..||||.||.|+-+=+.
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03301 25 DGEFVVLLGPSGCGKTTTLRMIAGLE 50 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 44477899999999999999887654
No 365
>PRK02224 chromosome segregation protein; Provisional
Probab=50.39 E-value=1.4e+02 Score=41.56 Aligned_cols=44 Identities=18% Similarity=0.184 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchhhccHHHHHHHHHHHHhh
Q psy4724 804 KKELEDQIELCKQKLERAEKLIGGLGGEKTRWSEASANLSKALVN 848 (1650)
Q Consensus 804 ~~~l~~~~~~~~~rl~ra~~Li~~L~~E~~rW~~~~~~~~~~~~~ 848 (1650)
...+..++..+..++.+-+. +..+..+...|...+.+++.....
T Consensus 574 ~~~~~~~~~~l~~~~~~le~-~~~~~~~i~~~~~~~~~~~~~~~~ 617 (880)
T PRK02224 574 VAELNSKLAELKERIESLER-IRTLLAAIADAEDEIERLREKREA 617 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444442 344444444555555555544443
No 366
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=50.38 E-value=12 Score=42.12 Aligned_cols=35 Identities=20% Similarity=0.186 Sum_probs=25.5
Q ss_pred CCCceEEEecCCchhhhHHHHHHHhcCCceEEEEE
Q psy4724 74 PKGHAMLITIGGSGAAEVTKLATFMNEYVLFEIEI 108 (1650)
Q Consensus 74 p~G~alLvGvgGSGrqSLtrLAafi~~~~~fqIei 108 (1650)
|+....|+|..||||.||.|+-+=+..-+-=+|.+
T Consensus 25 ~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 59 (213)
T cd03262 25 KGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIII 59 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEE
Confidence 56688899999999999999887554333334433
No 367
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=50.28 E-value=1.9e+02 Score=33.09 Aligned_cols=26 Identities=8% Similarity=0.112 Sum_probs=13.2
Q ss_pred HHhhhchhhccHHHHHHHHHHHHhhc
Q psy4724 824 LIGGLGGEKTRWSEASANLSKALVNC 849 (1650)
Q Consensus 824 Li~~L~~E~~rW~~~~~~~~~~~~~l 849 (1650)
.+..|..-+.+|.......=..+..+
T Consensus 176 ~v~~~~~~~~~~~~~~~~~~~~~Q~l 201 (236)
T cd07651 176 AVKALRELNEIWNREWKAALDDFQDL 201 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444556766655444444443
No 368
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=50.27 E-value=13 Score=39.72 Aligned_cols=23 Identities=17% Similarity=0.303 Sum_probs=18.2
Q ss_pred EEEecCCchhhhHHHHHHHhcCC
Q psy4724 79 MLITIGGSGAAEVTKLATFMNEY 101 (1650)
Q Consensus 79 lLvGvgGSGrqSLtrLAafi~~~ 101 (1650)
+|+|+.||||.|+++.-+-..++
T Consensus 2 ~l~G~~GsGKSTla~~l~~~l~~ 24 (163)
T TIGR01313 2 VLMGVAGSGKSTIASALAHRLGA 24 (163)
T ss_pred EEECCCCCCHHHHHHHHHHhcCC
Confidence 68999999999998766555453
No 369
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=50.26 E-value=12 Score=40.21 Aligned_cols=26 Identities=15% Similarity=0.203 Sum_probs=21.7
Q ss_pred CCCceEEEecCCchhhhHHHHHHHhc
Q psy4724 74 PKGHAMLITIGGSGAAEVTKLATFMN 99 (1650)
Q Consensus 74 p~G~alLvGvgGSGrqSLtrLAafi~ 99 (1650)
|+-+..|+|..||||.||.|+-+=+.
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLY 50 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45588899999999999999877553
No 370
>KOG0161|consensus
Probab=50.08 E-value=1.5e+02 Score=43.78 Aligned_cols=96 Identities=19% Similarity=0.289 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhccHHH
Q psy4724 758 KKAKLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKLERAEKLIGGLGGEKTRWSE 837 (1650)
Q Consensus 758 ~~~~l~~~e~~l~~~~~~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~~Li~~L~~E~~rW~~ 837 (1650)
....++.+.....+..+.+...+.+++.+++.+++|+..++.+.+.+..++.+..+...++.....-.++|..++.+=..
T Consensus 1644 lq~~~e~~~~~~~e~~~q~~~aerr~~~l~~E~eeL~~~l~~~~Rarr~aE~e~~E~~e~i~~~~~~~s~l~~~KrklE~ 1723 (1930)
T KOG0161|consen 1644 LQRELEDAQRAREELLEQLAEAERRLAALQAELEELREKLEALERARRQAELELEELAERVNELNAQNSSLTAEKRKLEA 1723 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHH
Confidence 33455555555566666666666777777777777777778888888888888887777777666666778888888888
Q ss_pred HHHHHHHHHhhchhHH
Q psy4724 838 ASANLSKALVNCIGDI 853 (1650)
Q Consensus 838 ~~~~~~~~~~~l~Gd~ 853 (1650)
.+..++..+....+++
T Consensus 1724 ~i~~l~~elee~~~~~ 1739 (1930)
T KOG0161|consen 1724 EIAQLQSELEEEQSEL 1739 (1930)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888888887765544
No 371
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=50.01 E-value=1.5e+02 Score=30.26 Aligned_cols=47 Identities=15% Similarity=0.311 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy4724 783 LATVLGKLQALRDELAQKSKDKKELEDQIELCKQKLERAEKLIGGLG 829 (1650)
Q Consensus 783 l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~~Li~~L~ 829 (1650)
|+.+..++++..+--+....+...+..+++.+...++.-...+.+|+
T Consensus 70 Id~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le 116 (126)
T PF07889_consen 70 IDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLE 116 (126)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444445554443
No 372
>PRK14532 adenylate kinase; Provisional
Probab=50.00 E-value=14 Score=40.66 Aligned_cols=26 Identities=15% Similarity=0.081 Sum_probs=19.6
Q ss_pred ceEEEecCCchhhhHHHHHHHhcCCc
Q psy4724 77 HAMLITIGGSGAAEVTKLATFMNEYV 102 (1650)
Q Consensus 77 ~alLvGvgGSGrqSLtrLAafi~~~~ 102 (1650)
|.+++|..||||.|+++.-|--.|+.
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~ 27 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMV 27 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCe
Confidence 57899999999999986554333443
No 373
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=50.00 E-value=12 Score=41.55 Aligned_cols=26 Identities=12% Similarity=0.267 Sum_probs=22.1
Q ss_pred CCCceEEEecCCchhhhHHHHHHHhc
Q psy4724 74 PKGHAMLITIGGSGAAEVTKLATFMN 99 (1650)
Q Consensus 74 p~G~alLvGvgGSGrqSLtrLAafi~ 99 (1650)
|+....|+|..||||.+|.|+-+=+.
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 25 PSAITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 56688899999999999999877653
No 374
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=49.81 E-value=11 Score=39.37 Aligned_cols=18 Identities=33% Similarity=0.501 Sum_probs=15.8
Q ss_pred ceEEEecCCchhhhHHHH
Q psy4724 77 HAMLITIGGSGAAEVTKL 94 (1650)
Q Consensus 77 ~alLvGvgGSGrqSLtrL 94 (1650)
..||||..||||.||++.
T Consensus 3 rimliG~~g~GKTTL~q~ 20 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQA 20 (143)
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 479999999999998765
No 375
>KOG0976|consensus
Probab=49.78 E-value=1.8e+02 Score=37.96 Aligned_cols=56 Identities=11% Similarity=0.161 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4724 758 KKAKLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIEL 813 (1650)
Q Consensus 758 ~~~~l~~~e~~l~~~~~~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~ 813 (1650)
..+.+.+.+.++...+..+...+.+++.+++.++.++++..++..+.+.+..++..
T Consensus 97 lEddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~ 152 (1265)
T KOG0976|consen 97 LEDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHK 152 (1265)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 34444555555555555555555555555555555555555544444444443333
No 376
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=49.77 E-value=16 Score=43.16 Aligned_cols=25 Identities=28% Similarity=0.316 Sum_probs=20.6
Q ss_pred CCceEEEecCCchhhhH-HHHHHHhc
Q psy4724 75 KGHAMLITIGGSGAAEV-TKLATFMN 99 (1650)
Q Consensus 75 ~G~alLvGvgGSGrqSL-trLAafi~ 99 (1650)
++..+++|++||||.++ ++||++.+
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~~ 219 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARFV 219 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34788999999999966 77888774
No 377
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=49.74 E-value=14 Score=46.25 Aligned_cols=35 Identities=26% Similarity=0.472 Sum_probs=28.3
Q ss_pred eeehHHHHHHHHHHHHHhcCCCCceEEEecCCchhhhH
Q psy4724 54 IVTFLYIIQHISRLCRILQQPKGHAMLITIGGSGAAEV 91 (1650)
Q Consensus 54 lVlF~~ai~Hv~rI~Ril~~p~G~alLvGvgGSGrqSL 91 (1650)
|-++.+.. .++.|.+.+|+|=.|..|+.||||.|.
T Consensus 240 Lg~~~~~~---~~~~~~~~~p~GliLvTGPTGSGKTTT 274 (500)
T COG2804 240 LGMSPFQL---ARLLRLLNRPQGLILVTGPTGSGKTTT 274 (500)
T ss_pred hCCCHHHH---HHHHHHHhCCCeEEEEeCCCCCCHHHH
Confidence 44455443 478889999999999999999999875
No 378
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=49.58 E-value=13 Score=40.73 Aligned_cols=25 Identities=12% Similarity=0.127 Sum_probs=20.9
Q ss_pred CCCceEEEecCCchhhhHHHHHHHh
Q psy4724 74 PKGHAMLITIGGSGAAEVTKLATFM 98 (1650)
Q Consensus 74 p~G~alLvGvgGSGrqSLtrLAafi 98 (1650)
|+....|+|..||||.||.|+-+=+
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~ 48 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGL 48 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 5568889999999999999986643
No 379
>KOG0733|consensus
Probab=49.55 E-value=28 Score=44.09 Aligned_cols=66 Identities=17% Similarity=0.363 Sum_probs=51.8
Q ss_pred cCCCCceEEEecCCchhhhHHHHHHHhcCCceEEEE---Ec-ccCCcchhHHHHHHHHHHhccCCCCCEEEEEec
Q psy4724 72 QQPKGHAMLITIGGSGAAEVTKLATFMNEYVLFEIE---IL-KTYGLTDWRDDLCRLMKKSGGKDAKPMTFLFSD 142 (1650)
Q Consensus 72 ~~p~G~alLvGvgGSGrqSLtrLAafi~~~~~fqIe---it-k~Yg~~~f~eDLk~l~~~~g~~~~k~~vFl~tD 142 (1650)
+-|.| .||.|+.|+||.=|+|-+|-=+|..+..|. +- +--|.++ --++.++.+|- ...|||+.|.+
T Consensus 543 ~~PsG-vLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlNkYVGESE--rAVR~vFqRAR--~saPCVIFFDE 612 (802)
T KOG0733|consen 543 DAPSG-VLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLNKYVGESE--RAVRQVFQRAR--ASAPCVIFFDE 612 (802)
T ss_pred CCCCc-eEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHHHHhhhHH--HHHHHHHHHhh--cCCCeEEEecc
Confidence 44555 789999999999999999999999998884 33 3346664 34889999986 67899988864
No 380
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=49.52 E-value=19 Score=43.59 Aligned_cols=44 Identities=18% Similarity=0.255 Sum_probs=30.4
Q ss_pred HHHHHHHhcCCCCceEEEecCCchhhhHHH-HHHHhcC-CceEEEE
Q psy4724 64 ISRLCRILQQPKGHAMLITIGGSGAAEVTK-LATFMNE-YVLFEIE 107 (1650)
Q Consensus 64 v~rI~Ril~~p~G~alLvGvgGSGrqSLtr-LAafi~~-~~~fqIe 107 (1650)
+..+-+.+-..+||.+++|..||||.+|.+ |..++.. ..++.||
T Consensus 167 ~~~~L~~~v~~~~~ili~G~tGsGKTTll~al~~~i~~~~riv~iE 212 (340)
T TIGR03819 167 VARLLRAIVAARLAFLISGGTGSGKTTLLSALLALVAPDERIVLVE 212 (340)
T ss_pred HHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHccCCCCCcEEEEC
Confidence 334445455678999999999999999877 5556643 3444444
No 381
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=49.35 E-value=43 Score=42.27 Aligned_cols=89 Identities=16% Similarity=0.180 Sum_probs=50.4
Q ss_pred HHHHhcCCC--CceEEEecCCchhhhHHHHHHH-hc----CCceEEEEEcccCCcchhHHHHHHHHHHhc------cCCC
Q psy4724 67 LCRILQQPK--GHAMLITIGGSGAAEVTKLATF-MN----EYVLFEIEILKTYGLTDWRDDLCRLMKKSG------GKDA 133 (1650)
Q Consensus 67 I~Ril~~p~--G~alLvGvgGSGrqSLtrLAaf-i~----~~~~fqIeitk~Yg~~~f~eDLk~l~~~~g------~~~~ 133 (1650)
+.++...|+ .+.+|.|..|+||..|++..+. +. +..+.-+. ..+|..++...+.... ....
T Consensus 120 ~~~~~~~~~~~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~------~~~f~~~~~~~~~~~~~~~f~~~~~~ 193 (440)
T PRK14088 120 ALEVAKNPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT------SEKFLNDLVDSMKEGKLNEFREKYRK 193 (440)
T ss_pred HHHHHhCcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE------HHHHHHHHHHHHhcccHHHHHHHHHh
Confidence 334445565 3689999999999999885543 33 23344332 3445555433222100 0012
Q ss_pred CCEEEEEecCCcC------chhhHHHHHHHHhhh
Q psy4724 134 KPMTFLFSDTQIQ------NEVFVEHINMLLNTA 161 (1650)
Q Consensus 134 k~~vFl~tD~qI~------~E~fLedIN~lL~tg 161 (1650)
++-++++.|-|.. ++.|+.-+|.+...|
T Consensus 194 ~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~ 227 (440)
T PRK14088 194 KVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSG 227 (440)
T ss_pred cCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcC
Confidence 3557888888743 245666777776654
No 382
>CHL00181 cbbX CbbX; Provisional
Probab=49.24 E-value=12 Score=44.20 Aligned_cols=25 Identities=16% Similarity=0.066 Sum_probs=21.4
Q ss_pred CCceEEEecCCchhhhHHHHHHHhc
Q psy4724 75 KGHAMLITIGGSGAAEVTKLATFMN 99 (1650)
Q Consensus 75 ~G~alLvGvgGSGrqSLtrLAafi~ 99 (1650)
+-|+||.|..|+||.+++|.-+.+.
T Consensus 59 ~~~ill~G~pGtGKT~lAr~la~~~ 83 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKMADIL 83 (287)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH
Confidence 3479999999999999999887653
No 383
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=49.16 E-value=3.7e+02 Score=31.31 Aligned_cols=121 Identities=20% Similarity=0.181 Sum_probs=51.2
Q ss_pred hhCCCCCCCCccCCcccHHHHHHHHHhhhc---CCCCCchhhHhHhhcCccchhhHHHHHHHHHHhc-----------ch
Q psy4724 692 QYGPLGWNIPYEFNLSDLNISMKQLQMFLN---DYTTIPFDALIYLTASIPFQVLAMEVYDRVIKIV-----------GP 757 (1650)
Q Consensus 692 kf~~lG~ni~y~Fn~sDl~~~~~~l~~~l~---~~~~~p~~~l~~~~~s~a~Wv~A~~~Y~~v~~~v-----------~P 757 (1650)
.|+.-|...|. +|+...+..++.++. ..+|.+... ..-+.|-.|-.-+.+|.+.+ .+
T Consensus 112 ~l~~~~~~~~~----~~l~~~l~ea~~mL~emr~r~f~~~~~-----~Ae~El~~A~~LL~~v~~~~~~~~~~~~~l~~~ 182 (264)
T PF06008_consen 112 SLNENGDQLPS----EDLQRALAEAQRMLEEMRKRDFTPQRQ-----NAEDELKEAEDLLSRVQKWFQKPQQENESLAEA 182 (264)
T ss_pred HhCcccCCCCH----HHHHHHHHHHHHHHHHHHhccchhHHH-----HHHHHHHHHHHHHHHHHHHHhhHHHhhHHHHHH
Confidence 36663333333 466666666665553 345655310 00113333333333333332 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4724 758 KKAKLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKLERA 821 (1650)
Q Consensus 758 ~~~~l~~~e~~l~~~~~~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra 821 (1650)
.+..|.+-+.+|..++..|.+......+.+.-...-+..+.+...+++.++.....+..-|.-|
T Consensus 183 i~~~L~~~~~kL~Dl~~~l~eA~~~~~ea~~ln~~n~~~l~~~~~k~~~l~~~~~~~~~~L~~a 246 (264)
T PF06008_consen 183 IRDDLNDYNAKLQDLRDLLNEAQNKTREAEDLNRANQKNLEDLEKKKQELSEQQNEVSETLKEA 246 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444443333334444444444444444444444333333
No 384
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=49.09 E-value=56 Score=41.25 Aligned_cols=78 Identities=15% Similarity=0.211 Sum_probs=45.6
Q ss_pred ceEEEecCCchhhhHHHHHHHh---cCCceEEEEEcccCCcchhHHHHHHHHHHhcc------CCCCCEEEEEecCCcC-
Q psy4724 77 HAMLITIGGSGAAEVTKLATFM---NEYVLFEIEILKTYGLTDWRDDLCRLMKKSGG------KDAKPMTFLFSDTQIQ- 146 (1650)
Q Consensus 77 ~alLvGvgGSGrqSLtrLAafi---~~~~~fqIeitk~Yg~~~f~eDLk~l~~~~g~------~~~k~~vFl~tD~qI~- 146 (1650)
.++|.|..|+||..|++..+.- .++.+.-+. ..+|-.++...+.. |. .-...-++++.|-|..
T Consensus 143 pl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~------~~~f~~~~~~~l~~-~~~~~f~~~~~~~dvLiIDDiq~l~ 215 (445)
T PRK12422 143 PIYLFGPEGSGKTHLMQAAVHALRESGGKILYVR------SELFTEHLVSAIRS-GEMQRFRQFYRNVDALFIEDIEVFS 215 (445)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEee------HHHHHHHHHHHHhc-chHHHHHHHcccCCEEEEcchhhhc
Confidence 5899999999999999977753 255555443 22333333222211 00 0123447788886664
Q ss_pred -----chhhHHHHHHHHhhh
Q psy4724 147 -----NEVFVEHINMLLNTA 161 (1650)
Q Consensus 147 -----~E~fLedIN~lL~tg 161 (1650)
+|.|+.-+|.+...|
T Consensus 216 ~k~~~qeelf~l~N~l~~~~ 235 (445)
T PRK12422 216 GKGATQEEFFHTFNSLHTEG 235 (445)
T ss_pred CChhhHHHHHHHHHHHHHCC
Confidence 345666677776554
No 385
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=49.00 E-value=12 Score=42.24 Aligned_cols=25 Identities=20% Similarity=0.194 Sum_probs=21.4
Q ss_pred CCCceEEEecCCchhhhHHHHHHHh
Q psy4724 74 PKGHAMLITIGGSGAAEVTKLATFM 98 (1650)
Q Consensus 74 p~G~alLvGvgGSGrqSLtrLAafi 98 (1650)
|+.+..|+|..||||.||.|+-+=+
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~i~G~ 49 (220)
T cd03265 25 RGEIFGLLGPNGAGKTTTIKMLTTL 49 (220)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 5667889999999999999987654
No 386
>KOG4657|consensus
Probab=48.95 E-value=2.8e+02 Score=30.94 Aligned_cols=24 Identities=17% Similarity=0.295 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy4724 786 VLGKLQALRDELAQKSKDKKELED 809 (1650)
Q Consensus 786 ~~~~l~~l~~~~~~~~~e~~~l~~ 809 (1650)
+++.+..++.+++.....++.++.
T Consensus 91 ieqeik~~q~elEvl~~n~Q~lke 114 (246)
T KOG4657|consen 91 IEQEIKATQSELEVLRRNLQLLKE 114 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 387
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=48.82 E-value=18 Score=47.01 Aligned_cols=35 Identities=20% Similarity=0.259 Sum_probs=25.6
Q ss_pred CCCceEEEecCCchhhhHHHHHHHhcCCceEEEEE
Q psy4724 74 PKGHAMLITIGGSGAAEVTKLATFMNEYVLFEIEI 108 (1650)
Q Consensus 74 p~G~alLvGvgGSGrqSLtrLAafi~~~~~fqIei 108 (1650)
|+....+||..||||.||.+|-+=....+-=+|.+
T Consensus 360 ~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i 394 (529)
T TIGR02868 360 PGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTL 394 (529)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEE
Confidence 56688999999999999999887554333334444
No 388
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=48.82 E-value=17 Score=39.89 Aligned_cols=32 Identities=6% Similarity=0.235 Sum_probs=25.0
Q ss_pred HHHHHHHHhc--CCCCceEEEecCCchhhhHHHH
Q psy4724 63 HISRLCRILQ--QPKGHAMLITIGGSGAAEVTKL 94 (1650)
Q Consensus 63 Hv~rI~Ril~--~p~G~alLvGvgGSGrqSLtrL 94 (1650)
...|+-+.+. +.+.+.+++|.+|+||.||.+-
T Consensus 3 ~~~~~~~~~~~~~~~~~i~ivG~~~~GKTsli~~ 36 (184)
T smart00178 3 WFYDILASLGLWNKHAKILFLGLDNAGKTTLLHM 36 (184)
T ss_pred HHHHHHHHhccccccCEEEEECCCCCCHHHHHHH
Confidence 3556777664 5578999999999999999543
No 389
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=48.81 E-value=13 Score=41.37 Aligned_cols=26 Identities=23% Similarity=0.224 Sum_probs=22.0
Q ss_pred CCCceEEEecCCchhhhHHHHHHHhc
Q psy4724 74 PKGHAMLITIGGSGAAEVTKLATFMN 99 (1650)
Q Consensus 74 p~G~alLvGvgGSGrqSLtrLAafi~ 99 (1650)
|+....|+|..||||.||.++.+=+.
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~i~G~~ 51 (200)
T PRK13540 26 AGGLLHLKGSNGAGKTTLLKLIAGLL 51 (200)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 67788999999999999999866443
No 390
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=48.79 E-value=1.1e+02 Score=40.74 Aligned_cols=78 Identities=24% Similarity=0.275 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhccH
Q psy4724 758 KKAKLAEAEADYAVQMEKLNS--KRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKLERAEKLIGGLGGEKTRW 835 (1650)
Q Consensus 758 ~~~~l~~~e~~l~~~~~~L~~--~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~~Li~~L~~E~~rW 835 (1650)
+..++.+++.++......|.. ....+..+.+++..++.++.+...++..++.+++.++..++..++-+..+.....++
T Consensus 396 ~~~~~~~~e~el~~l~~~l~~~~~~e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 475 (650)
T TIGR03185 396 LLKELRELEEELAEVDKKISTIPSEEQIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTLDEKTKQKINA 475 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444555555555555555543 134455555555555555555555555555555555555555555554444444333
No 391
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=48.68 E-value=1.1e+02 Score=30.29 Aligned_cols=62 Identities=18% Similarity=0.306 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4724 758 KKAKLAEAEADYAVQMEKLNSKRAQLATVLGKLQAL--RDELAQKSKDKKELEDQIELCKQKLERAEKLIG 826 (1650)
Q Consensus 758 ~~~~l~~~e~~l~~~~~~L~~~~~~l~~~~~~l~~l--~~~~~~~~~e~~~l~~~~~~~~~rl~ra~~Li~ 826 (1650)
++..++++++.+.....++.. +|.+++.| ++++.+..-+..+++.+++.+..+++.-..+.+
T Consensus 33 ~~~~~~~l~~~~~~~~~Rl~~-------lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~ 96 (106)
T PF10805_consen 33 KREDIEKLEERLDEHDRRLQA-------LETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQLD 96 (106)
T ss_pred cHHHHHHHHHHHHHHHHHHHH-------HHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 355555555555544444444 44444444 444444444444444444444444444444333
No 392
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=48.65 E-value=16 Score=40.02 Aligned_cols=20 Identities=15% Similarity=0.229 Sum_probs=16.4
Q ss_pred eEEEecCCchhhhHHH-HHHH
Q psy4724 78 AMLITIGGSGAAEVTK-LATF 97 (1650)
Q Consensus 78 alLvGvgGSGrqSLtr-LAaf 97 (1650)
.+++|+.||||.|+++ ||..
T Consensus 6 i~i~G~~GsGKsTl~~~l~~~ 26 (188)
T TIGR01360 6 IFIVGGPGSGKGTQCEKIVEK 26 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999986 5544
No 393
>cd07655 F-BAR_PACSIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce
Probab=48.64 E-value=4.6e+02 Score=30.50 Aligned_cols=26 Identities=12% Similarity=0.113 Sum_probs=15.4
Q ss_pred HHhhhchhhccHHHHHHHHHHHHhhc
Q psy4724 824 LIGGLGGEKTRWSEASANLSKALVNC 849 (1650)
Q Consensus 824 Li~~L~~E~~rW~~~~~~~~~~~~~l 849 (1650)
-+..|...+.+|.+.....=..+..+
T Consensus 194 ~l~~~n~~~~~y~~~m~~~~~~~Q~l 219 (258)
T cd07655 194 ALEDLNKYNPRYMEDMEQVFDKCQEF 219 (258)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 44556666677887666555444444
No 394
>KOG0736|consensus
Probab=48.56 E-value=28 Score=45.34 Aligned_cols=65 Identities=12% Similarity=0.299 Sum_probs=52.9
Q ss_pred CCCceEEEecCCchhhhHHHHHHHhcCCceEEEE---E-cccCCcchhHHHHHHHHHHhccCCCCCEEEEEec
Q psy4724 74 PKGHAMLITIGGSGAAEVTKLATFMNEYVLFEIE---I-LKTYGLTDWRDDLCRLMKKSGGKDAKPMTFLFSD 142 (1650)
Q Consensus 74 p~G~alLvGvgGSGrqSLtrLAafi~~~~~fqIe---i-tk~Yg~~~f~eDLk~l~~~~g~~~~k~~vFl~tD 142 (1650)
+|.-.||-|+.|+||.=|++--|-=|...++.+. + ..--|.+| +++++++.+|- .-.|||+.|.+
T Consensus 704 kRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLNMYVGqSE--~NVR~VFerAR--~A~PCVIFFDE 772 (953)
T KOG0736|consen 704 KRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLNMYVGQSE--ENVREVFERAR--SAAPCVIFFDE 772 (953)
T ss_pred ccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHHHHhcchH--HHHHHHHHHhh--ccCCeEEEecc
Confidence 4888999999999999999999988888888874 2 23346664 88999999986 67999988754
No 395
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=48.52 E-value=51 Score=44.70 Aligned_cols=36 Identities=14% Similarity=0.102 Sum_probs=30.1
Q ss_pred CCC-ceEEEecCCchhhhHHHHHHHhcCCceEEEEEc
Q psy4724 74 PKG-HAMLITIGGSGAAEVTKLATFMNEYVLFEIEIL 109 (1650)
Q Consensus 74 p~G-~alLvGvgGSGrqSLtrLAafi~~~~~fqIeit 109 (1650)
++| ..+|+|+.|+||.|+++..|-..+..++.+..+
T Consensus 347 ~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~ 383 (784)
T PRK10787 347 IKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALG 383 (784)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcC
Confidence 445 589999999999999999998888888777655
No 396
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=48.42 E-value=18 Score=46.00 Aligned_cols=26 Identities=27% Similarity=0.321 Sum_probs=21.9
Q ss_pred CCCceEEEecCCchhhhHH-HHHHHhc
Q psy4724 74 PKGHAMLITIGGSGAAEVT-KLATFMN 99 (1650)
Q Consensus 74 p~G~alLvGvgGSGrqSLt-rLAafi~ 99 (1650)
++|..+|||.+|+||.+++ +||+..+
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la 375 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFA 375 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4789999999999999885 7887654
No 397
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=48.35 E-value=13 Score=41.68 Aligned_cols=26 Identities=12% Similarity=0.063 Sum_probs=21.2
Q ss_pred CCCceEEEecCCchhhhHHHHHHHhc
Q psy4724 74 PKGHAMLITIGGSGAAEVTKLATFMN 99 (1650)
Q Consensus 74 p~G~alLvGvgGSGrqSLtrLAafi~ 99 (1650)
|+....|+|..||||.||.++-+=+.
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 25 KGEIFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 44567799999999999999877543
No 398
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=48.32 E-value=18 Score=40.13 Aligned_cols=43 Identities=19% Similarity=0.245 Sum_probs=24.6
Q ss_pred CCCceEEEecCCchhhhHHHHHHHhcC-Cc-eEEEEEcccCCcch
Q psy4724 74 PKGHAMLITIGGSGAAEVTKLATFMNE-YV-LFEIEILKTYGLTD 116 (1650)
Q Consensus 74 p~G~alLvGvgGSGrqSLtrLAafi~~-~~-~fqIeitk~Yg~~~ 116 (1650)
-++|.||+|..||||..|+|-..-|.. .+ --.+|+++-|+...
T Consensus 21 G~h~lLl~GppGtGKTmlA~~l~~lLP~l~~~e~le~~~i~s~~~ 65 (206)
T PF01078_consen 21 GGHHLLLIGPPGTGKTMLARRLPSLLPPLTEEEALEVSKIYSVAG 65 (206)
T ss_dssp CC--EEEES-CCCTHHHHHHHHHHCS--CCEECCESS--S-TT--
T ss_pred CCCCeEEECCCCCCHHHHHHHHHHhCCCCchHHHhhhcccccccc
Confidence 367999999999999999987777742 22 22345566565553
No 399
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=48.24 E-value=4.1e+02 Score=29.18 Aligned_cols=69 Identities=9% Similarity=0.137 Sum_probs=33.6
Q ss_pred hHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4724 743 LAMEVYDRVIKIVGPKKAKLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQI 811 (1650)
Q Consensus 743 ~A~~~Y~~v~~~v~P~~~~l~~~e~~l~~~~~~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~ 811 (1650)
.|+..|.-+-.+++-++.-+..+++......++....+.+-+.+..+++.|+.+-.....+.+.++.+.
T Consensus 57 qal~~aK~l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~ 125 (193)
T PF14662_consen 57 QALQKAKALEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRS 125 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHH
Confidence 344445555555555555555555555555444444444444444455444444444444444444333
No 400
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=48.17 E-value=44 Score=43.89 Aligned_cols=53 Identities=9% Similarity=0.092 Sum_probs=36.6
Q ss_pred ceeehHHHHHHHHHHHHHhcC--CCCc-eEEEecCCchhhhHHHHHHHhcCCceEE
Q psy4724 53 DIVTFLYIIQHISRLCRILQQ--PKGH-AMLITIGGSGAAEVTKLATFMNEYVLFE 105 (1650)
Q Consensus 53 ~lVlF~~ai~Hv~rI~Ril~~--p~G~-alLvGvgGSGrqSLtrLAafi~~~~~fq 105 (1650)
+|+.-+..++-|.++.+-... ..|+ ++|.|..|+||.++.++.|-..++.+.+
T Consensus 85 el~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~E 140 (637)
T TIGR00602 85 ELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELGIQVQE 140 (637)
T ss_pred HhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHH
Confidence 466666666655555443332 2344 8999999999999999999777776533
No 401
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=48.16 E-value=13 Score=42.13 Aligned_cols=28 Identities=14% Similarity=0.326 Sum_probs=22.2
Q ss_pred cCCCC-ceEEEecCCchhhhHHHHHHHhc
Q psy4724 72 QQPKG-HAMLITIGGSGAAEVTKLATFMN 99 (1650)
Q Consensus 72 ~~p~G-~alLvGvgGSGrqSLtrLAafi~ 99 (1650)
..+.| ...|+|..||||.||.|+-+=+.
T Consensus 26 ~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 26 SVEEGEFVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred EEeCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 33444 67899999999999999977553
No 402
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=48.13 E-value=17 Score=42.11 Aligned_cols=22 Identities=27% Similarity=0.451 Sum_probs=18.1
Q ss_pred eEEEecCCchhhhHHH-HHHHhc
Q psy4724 78 AMLITIGGSGAAEVTK-LATFMN 99 (1650)
Q Consensus 78 alLvGvgGSGrqSLtr-LAafi~ 99 (1650)
.+|+|.+||||.|+++ ||.+..
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~ 24 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLS 24 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 4799999999999987 566653
No 403
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=48.00 E-value=29 Score=49.62 Aligned_cols=66 Identities=17% Similarity=0.146 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCcceeehHHHHHHHHHHHHHhcC---CCCceEEEecCCchhhhHHHHHHH
Q psy4724 29 LDLLTEKINQYIVDYNTQNSNKPIDIVTFLYIIQHISRLCRILQQ---PKGHAMLITIGGSGAAEVTKLATF 97 (1650)
Q Consensus 29 ~~~l~~~l~~~l~~yN~~~~~~~m~lVlF~~ai~Hv~rI~Ril~~---p~G~alLvGvgGSGrqSLtrLAaf 97 (1650)
-+.+.+++++-++..|.......=++|=.++.++ +|.+.|.. +..-+-++|+||.||.||+|..+.
T Consensus 161 ~~~i~~Iv~~v~~~l~~~~~~~~~~~vG~~~~l~---~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~ 229 (1153)
T PLN03210 161 AKMIEEIANDVLGKLNLTPSNDFEDFVGIEDHIA---KMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFS 229 (1153)
T ss_pred HHHHHHHHHHHHHhhccccCcccccccchHHHHH---HHHHHHccccCceEEEEEEcCCCCchHHHHHHHHH
Confidence 3457778888888887633332335665554444 45555532 233567899999999999998743
No 404
>TIGR03754 conj_TOL_TraD conjugative coupling factor TraD, TOL family. Members of this protein are assigned by homology to the TraD family of conjugative coupling factor. This particular clade serves as a marker for an extended gene region that occurs occasionally on plasmids, including the toluene catabolism TOL plasmid. More commonly, the gene region is chromosomal, flanked by various markers of conjugative transfer and insertion.
Probab=47.98 E-value=31 Score=45.07 Aligned_cols=60 Identities=17% Similarity=0.255 Sum_probs=40.6
Q ss_pred hcCCCCceEEEecCCchhhhHHHHHH--Hhc-CCceEEEEEcccCCcchhHHHHHHHHHHhccCCCC
Q psy4724 71 LQQPKGHAMLITIGGSGAAEVTKLAT--FMN-EYVLFEIEILKTYGLTDWRDDLCRLMKKSGGKDAK 134 (1650)
Q Consensus 71 l~~p~G~alLvGvgGSGrqSLtrLAa--fi~-~~~~fqIeitk~Yg~~~f~eDLk~l~~~~g~~~~k 134 (1650)
+..-.||.+.+|..||||.+|..+.. .+. |..++-+.. .|-.++.+.+..+.+++| ..+.
T Consensus 176 ~~~~~gHtlV~GtTGsGKT~l~~~li~q~i~~g~~vi~fDp---kgD~el~~~~~~~~~~~G-R~~~ 238 (643)
T TIGR03754 176 LGERVGHTLVLGTTRVGKTRLAELLITQDIRRGDVVIVFDP---KGDADLLKRMYAEAKRAG-RLDE 238 (643)
T ss_pred cccccCceEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeC---CCCHHHHHHHHHHHHHhC-CCCc
Confidence 33347999999999999999876543 222 444433333 355578888988888888 4433
No 405
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=47.92 E-value=12 Score=42.31 Aligned_cols=25 Identities=16% Similarity=0.155 Sum_probs=21.3
Q ss_pred CCCceEEEecCCchhhhHHHHHHHh
Q psy4724 74 PKGHAMLITIGGSGAAEVTKLATFM 98 (1650)
Q Consensus 74 p~G~alLvGvgGSGrqSLtrLAafi 98 (1650)
|+....|+|..||||.||.++-+=+
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (222)
T cd03224 25 EGEIVALLGRNGAGKTTLLKTIMGL 49 (222)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCC
Confidence 5668889999999999999987644
No 406
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=47.84 E-value=1.8e+02 Score=32.89 Aligned_cols=68 Identities=26% Similarity=0.288 Sum_probs=29.7
Q ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4724 748 YDRVIKIVGPKKAKLAEAEADYAVQMEKLNSKRAQLATVL-------GKLQALRDELAQKSKDKKELEDQIELCK 815 (1650)
Q Consensus 748 Y~~v~~~v~P~~~~l~~~e~~l~~~~~~L~~~~~~l~~~~-------~~l~~l~~~~~~~~~e~~~l~~~~~~~~ 815 (1650)
|.....-|+-.-.+-..+-..+..+...|..++..+..+. +++..++.+++++....+..+.+.+.+.
T Consensus 96 y~r~~~Svk~~~~~R~~~~~~~~~~~~~L~k~~~~~~Kl~~~~~s~~~K~~~~~~ei~~~e~~~~~a~~~~e~is 170 (216)
T cd07627 96 YIRSIGSVRAAFAQRQKLWQYWQSAESELSKKKAQLEKLKRQGKTQQEKLNSLLSELEEAERRASELKKEFEEVS 170 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333444445555555555555444442 3444444444444444444444443333
No 407
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=47.79 E-value=2.1e+02 Score=32.33 Aligned_cols=73 Identities=18% Similarity=0.254 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhhhchhhccHHHHHHHHHHHH
Q psy4724 774 EKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKLERAEKL----IGGLGGEKTRWSEASANLSKAL 846 (1650)
Q Consensus 774 ~~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~~L----i~~L~~E~~rW~~~~~~~~~~~ 846 (1650)
..+......+..+...+..++.++.+...++..|.......+....-...+ +++....-.|+...+...+.+.
T Consensus 105 ~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~a~a~~~~~~~~~~~~~~~a~~~~er~e~ki~~~ea~a 181 (221)
T PF04012_consen 105 QQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARENAAKAQKKVNEALASFSVSSAMDSFERMEEKIEEMEARA 181 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchHHHHHHHHHHHHHHHHHH
Confidence 333333333444444444444444444444444444333333322222221 2333334456766666655543
No 408
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=47.49 E-value=13 Score=41.14 Aligned_cols=26 Identities=12% Similarity=0.175 Sum_probs=22.2
Q ss_pred CCCceEEEecCCchhhhHHHHHHHhc
Q psy4724 74 PKGHAMLITIGGSGAAEVTKLATFMN 99 (1650)
Q Consensus 74 p~G~alLvGvgGSGrqSLtrLAafi~ 99 (1650)
|+.+..|+|..||||.||.++-+=+.
T Consensus 34 ~Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 34 PGELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 56688999999999999999877554
No 409
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=47.46 E-value=2e+02 Score=25.44 Aligned_cols=21 Identities=33% Similarity=0.556 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy4724 793 LRDELAQKSKDKKELEDQIEL 813 (1650)
Q Consensus 793 l~~~~~~~~~e~~~l~~~~~~ 813 (1650)
++..+.++..+...|+.+++.
T Consensus 30 ~e~kLqeaE~rn~eL~~ei~~ 50 (61)
T PF08826_consen 30 FESKLQEAEKRNRELEQEIER 50 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 410
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=47.27 E-value=14 Score=38.50 Aligned_cols=21 Identities=19% Similarity=0.091 Sum_probs=16.9
Q ss_pred eEEEecCCchhhhHHHHHHHh
Q psy4724 78 AMLITIGGSGAAEVTKLATFM 98 (1650)
Q Consensus 78 alLvGvgGSGrqSLtrLAafi 98 (1650)
..|+|+.||||.||+++.+-.
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 368999999999987766543
No 411
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=47.25 E-value=14 Score=42.61 Aligned_cols=25 Identities=12% Similarity=0.345 Sum_probs=21.2
Q ss_pred CCCceEEEecCCchhhhHHHHHHHh
Q psy4724 74 PKGHAMLITIGGSGAAEVTKLATFM 98 (1650)
Q Consensus 74 p~G~alLvGvgGSGrqSLtrLAafi 98 (1650)
|+.+..|+|..||||.||.|+-+=+
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (242)
T PRK11124 27 QGETLVLLGPSGAGKSSLLRVLNLL 51 (242)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 5668899999999999999996543
No 412
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=47.18 E-value=14 Score=40.69 Aligned_cols=26 Identities=12% Similarity=0.052 Sum_probs=21.5
Q ss_pred CCCceEEEecCCchhhhHHHHHHHhc
Q psy4724 74 PKGHAMLITIGGSGAAEVTKLATFMN 99 (1650)
Q Consensus 74 p~G~alLvGvgGSGrqSLtrLAafi~ 99 (1650)
|+....|+|..||||.||.|+-+=+.
T Consensus 17 ~Ge~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 17 RGEVLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45588899999999999999876553
No 413
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=47.09 E-value=19 Score=43.21 Aligned_cols=36 Identities=17% Similarity=0.113 Sum_probs=27.0
Q ss_pred CCCceEEEecCCchhhhHH-HHHHHhc----CCceEEEEEc
Q psy4724 74 PKGHAMLITIGGSGAAEVT-KLATFMN----EYVLFEIEIL 109 (1650)
Q Consensus 74 p~G~alLvGvgGSGrqSLt-rLAafi~----~~~~fqIeit 109 (1650)
.+||.|+.|..||||.||. -|+.++. +..++.||-+
T Consensus 143 ~~~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~ 183 (323)
T PRK13833 143 SRLNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDT 183 (323)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCC
Confidence 4889999999999999997 4556662 3456666644
No 414
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=47.06 E-value=13 Score=42.88 Aligned_cols=25 Identities=24% Similarity=0.294 Sum_probs=21.6
Q ss_pred CCCceEEEecCCchhhhHHHHHHHh
Q psy4724 74 PKGHAMLITIGGSGAAEVTKLATFM 98 (1650)
Q Consensus 74 p~G~alLvGvgGSGrqSLtrLAafi 98 (1650)
|+.+..|+|..||||.||.++-+=+
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~i~Gl 52 (250)
T PRK14245 28 EKSVVAFIGPSGCGKSTFLRLFNRM 52 (250)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhh
Confidence 5668889999999999999998743
No 415
>KOG4364|consensus
Probab=46.86 E-value=23 Score=44.64 Aligned_cols=10 Identities=10% Similarity=0.162 Sum_probs=4.0
Q ss_pred CCCCchhhHH
Q psy4724 1561 SLKPLGSYIV 1570 (1650)
Q Consensus 1561 s~k~L~~w~~ 1570 (1650)
+..|+..-..
T Consensus 241 tk~p~~l~~K 250 (811)
T KOG4364|consen 241 TKRPEKLLLK 250 (811)
T ss_pred CCcchhHHHH
Confidence 3344443333
No 416
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=46.86 E-value=1.8e+02 Score=33.21 Aligned_cols=13 Identities=23% Similarity=0.636 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHhh
Q psy4724 870 FRNDLIEQWKSLS 882 (1650)
Q Consensus 870 ~R~~l~~~w~~~~ 882 (1650)
+-.+++..|-..+
T Consensus 218 ~qke~ie~We~f~ 230 (234)
T cd07664 218 TQQQLIKYWEAFL 230 (234)
T ss_pred HHHHHHHHHHHhh
Confidence 3345666676554
No 417
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=46.78 E-value=2.7e+02 Score=26.69 Aligned_cols=58 Identities=14% Similarity=0.247 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4724 763 AEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKLER 820 (1650)
Q Consensus 763 ~~~e~~l~~~~~~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~r 820 (1650)
+.+...|..+-..|...-..--+...+...++.+++.......+|.+++.....|+.+
T Consensus 7 e~al~rL~~aid~LE~~v~~r~~~~~~~~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~ 64 (89)
T PF13747_consen 7 EAALTRLEAAIDRLEKAVDRRLERDRKRDELEEEIQRLDADRSRLAQELDQAEARANR 64 (89)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHHHHhHHHHHHH
Confidence 3333444444444443333223333333666666666666666666666666665543
No 418
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=46.77 E-value=14 Score=41.69 Aligned_cols=26 Identities=12% Similarity=0.220 Sum_probs=21.1
Q ss_pred CCCceEEEecCCchhhhHHHHHHHhc
Q psy4724 74 PKGHAMLITIGGSGAAEVTKLATFMN 99 (1650)
Q Consensus 74 p~G~alLvGvgGSGrqSLtrLAafi~ 99 (1650)
|+....|+|..||||.||.|+-+=+.
T Consensus 29 ~G~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 29 KGEFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence 44478899999999999999866443
No 419
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=46.76 E-value=14 Score=41.25 Aligned_cols=26 Identities=15% Similarity=0.160 Sum_probs=21.9
Q ss_pred CCCceEEEecCCchhhhHHHHHHHhc
Q psy4724 74 PKGHAMLITIGGSGAAEVTKLATFMN 99 (1650)
Q Consensus 74 p~G~alLvGvgGSGrqSLtrLAafi~ 99 (1650)
|+....|+|..||||.||.|+-+=+.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 25 AGEIIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45578899999999999999876554
No 420
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=46.75 E-value=14 Score=41.25 Aligned_cols=26 Identities=15% Similarity=0.262 Sum_probs=21.7
Q ss_pred CCCceEEEecCCchhhhHHHHHHHhc
Q psy4724 74 PKGHAMLITIGGSGAAEVTKLATFMN 99 (1650)
Q Consensus 74 p~G~alLvGvgGSGrqSLtrLAafi~ 99 (1650)
|+.+..|+|..||||.||.++-+=+.
T Consensus 23 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 23 KGKMYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 44578899999999999999987554
No 421
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=46.61 E-value=14 Score=41.47 Aligned_cols=25 Identities=20% Similarity=0.149 Sum_probs=20.4
Q ss_pred CCCceEEEecCCchhhhHHHHHHHh
Q psy4724 74 PKGHAMLITIGGSGAAEVTKLATFM 98 (1650)
Q Consensus 74 p~G~alLvGvgGSGrqSLtrLAafi 98 (1650)
|+....|+|..||||.||.|+-+=+
T Consensus 27 ~G~~~~l~G~nGsGKSTLl~~i~Gl 51 (214)
T TIGR02673 27 KGEFLFLTGPSGAGKTTLLKLLYGA 51 (214)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4447789999999999999986544
No 422
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=46.55 E-value=57 Score=38.31 Aligned_cols=52 Identities=17% Similarity=0.270 Sum_probs=31.0
Q ss_pred CceEEEecCCchhhh-HHHHHHHhcCC--ceEEEEEcccCCcchhHHHHHHHHHHhc
Q psy4724 76 GHAMLITIGGSGAAE-VTKLATFMNEY--VLFEIEILKTYGLTDWRDDLCRLMKKSG 129 (1650)
Q Consensus 76 G~alLvGvgGSGrqS-LtrLAafi~~~--~~fqIeitk~Yg~~~f~eDLk~l~~~~g 129 (1650)
.-.+++|++|+||.| +++||.++... .+.=|..- .|.... .+.++....+.|
T Consensus 73 ~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D-~~r~~a-~~ql~~~~~~~~ 127 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGD-TFRAAA-IEQLEEWAKRLG 127 (272)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCC-CCCHHH-HHHHHHHHHhCC
Confidence 457788999999997 68898887643 33333221 244433 344544444444
No 423
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=46.51 E-value=14 Score=41.55 Aligned_cols=26 Identities=12% Similarity=0.133 Sum_probs=22.6
Q ss_pred CCCceEEEecCCchhhhHHHHHHHhc
Q psy4724 74 PKGHAMLITIGGSGAAEVTKLATFMN 99 (1650)
Q Consensus 74 p~G~alLvGvgGSGrqSLtrLAafi~ 99 (1650)
|+.+..|+|..||||.||.|+-+=+.
T Consensus 23 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 48 (213)
T TIGR01277 23 DGEIVAIMGPSGAGKSTLLNLIAGFI 48 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 67799999999999999999887554
No 424
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=46.46 E-value=2e+02 Score=38.20 Aligned_cols=71 Identities=18% Similarity=0.239 Sum_probs=34.7
Q ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4724 747 VYDRVIKIVGPKKAKLAEAEADYAVQMEKL----NSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQK 817 (1650)
Q Consensus 747 ~Y~~v~~~v~P~~~~l~~~e~~l~~~~~~L----~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~r 817 (1650)
+|..+..+|.-++.+|..+...+....... ...+.+++.+.+++..++........+...|+.++..+...
T Consensus 360 Ky~vav~Ev~~Lk~ELk~Lk~k~~~~~~~~~~ek~~~~~e~q~L~ekl~~lek~~re~qeri~~LE~ELr~l~~~ 434 (717)
T PF09730_consen 360 KYKVAVSEVIQLKAELKALKSKYNELEERYKQEKDRLESEVQNLKEKLMSLEKSSREDQERISELEKELRALSKL 434 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence 344444555555555555544444433322 22344555666666666555544444555555554444433
No 425
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=46.40 E-value=2.2e+02 Score=32.96 Aligned_cols=88 Identities=16% Similarity=0.174 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhccHHHHHHH
Q psy4724 762 LAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKLERAEKLIGGLGGEKTRWSEASAN 841 (1650)
Q Consensus 762 l~~~e~~l~~~~~~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~~Li~~L~~E~~rW~~~~~~ 841 (1650)
..+++..|...++.....+..|...+++...|..+...+..+...|+.....+..-..+...-......|+.+=...+..
T Consensus 7 k~Ele~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e 86 (246)
T PF00769_consen 7 KQELEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELRE 86 (246)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555556666666666666666666666666666665555555555555455555566665555555
Q ss_pred HHHHHhhc
Q psy4724 842 LSKALVNC 849 (1650)
Q Consensus 842 ~~~~~~~l 849 (1650)
+......|
T Consensus 87 ~~~~i~~l 94 (246)
T PF00769_consen 87 AEAEIARL 94 (246)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55554443
No 426
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=46.33 E-value=19 Score=39.04 Aligned_cols=39 Identities=10% Similarity=0.193 Sum_probs=26.9
Q ss_pred ceEEEecCCchhhhHHHHHHHhcCCceEEEEEcccCCcchhHHHH
Q psy4724 77 HAMLITIGGSGAAEVTKLATFMNEYVLFEIEILKTYGLTDWRDDL 121 (1650)
Q Consensus 77 ~alLvGvgGSGrqSLtrLAafi~~~~~fqIeitk~Yg~~~f~eDL 121 (1650)
..+|.|+.||||.|++|.-+-..+...+ +.+...|+.-+
T Consensus 4 ~i~l~G~~gsGKst~a~~l~~~~~~~~~------~~~~D~~~~~~ 42 (175)
T cd00227 4 IIILNGGSSAGKSSIARALQSVLAEPWL------HFGVDSFIEAL 42 (175)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCCCcc------ccCccHHHHhc
Confidence 4689999999999999965544444333 33666666654
No 427
>KOG3647|consensus
Probab=46.33 E-value=1.4e+02 Score=33.80 Aligned_cols=63 Identities=19% Similarity=0.316 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
Q psy4724 758 KKAKLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELED-------QIELCKQKLER 820 (1650)
Q Consensus 758 ~~~~l~~~e~~l~~~~~~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~-------~~~~~~~rl~r 820 (1650)
++..+.+...+++...+.|+......+.+.++|+.-+.+|+...+..+.|+. +++.|+.+|+.
T Consensus 110 lk~aIq~i~~~~q~~~~~Lnnvasdea~L~~Kierrk~ElEr~rkRle~LqsiRP~~MdEyE~~EeeLqk 179 (338)
T KOG3647|consen 110 LKSAIQAIQVRLQSSRAQLNNVASDEAALGSKIERRKAELERTRKRLEALQSIRPAHMDEYEDCEEELQK 179 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
No 428
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=46.32 E-value=52 Score=41.78 Aligned_cols=81 Identities=15% Similarity=0.139 Sum_probs=44.0
Q ss_pred CceEEEecCCchhhhHHHHHHHhc-----CCceEEEEEcccCCcchhHHHHHH----HHHHhccCCCCCEEEEEecCCcC
Q psy4724 76 GHAMLITIGGSGAAEVTKLATFMN-----EYVLFEIEILKTYGLTDWRDDLCR----LMKKSGGKDAKPMTFLFSDTQIQ 146 (1650)
Q Consensus 76 G~alLvGvgGSGrqSLtrLAafi~-----~~~~fqIeitk~Yg~~~f~eDLk~----l~~~~g~~~~k~~vFl~tD~qI~ 146 (1650)
+.++|.|..|+||..|++..+.-. +..+.-+... .+ .++|...++. -+... . ...-++++.|-|..
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~-~~-~~~~~~~~~~~~~~~~~~~--~-~~~dlLiiDDi~~l 223 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSE-KF-TNDFVNALRNNTMEEFKEK--Y-RSVDVLLIDDIQFL 223 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHH-HH-HHHHHHHHHcCcHHHHHHH--H-hcCCEEEEehhhhh
Confidence 458899999999999998766543 3333333211 11 1222222210 01111 1 12447788887753
Q ss_pred ------chhhHHHHHHHHhhh
Q psy4724 147 ------NEVFVEHINMLLNTA 161 (1650)
Q Consensus 147 ------~E~fLedIN~lL~tg 161 (1650)
++.|+.-+|.+...|
T Consensus 224 ~~~~~~~~~l~~~~n~l~~~~ 244 (450)
T PRK00149 224 AGKERTQEEFFHTFNALHEAG 244 (450)
T ss_pred cCCHHHHHHHHHHHHHHHHCC
Confidence 245666677776654
No 429
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=46.27 E-value=14 Score=42.13 Aligned_cols=26 Identities=12% Similarity=0.114 Sum_probs=21.5
Q ss_pred CCCceEEEecCCchhhhHHHHHHHhc
Q psy4724 74 PKGHAMLITIGGSGAAEVTKLATFMN 99 (1650)
Q Consensus 74 p~G~alLvGvgGSGrqSLtrLAafi~ 99 (1650)
|+....|+|..||||.||.++-+=+.
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 55 (233)
T cd03258 30 KGEIFGIIGRSGAGKSTLIRCINGLE 55 (233)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44578899999999999999877554
No 430
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=46.18 E-value=3e+02 Score=30.71 Aligned_cols=45 Identities=22% Similarity=0.243 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4724 775 KLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKLE 819 (1650)
Q Consensus 775 ~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ 819 (1650)
.|...+..+..+++.+..|+-+++...+....++.+.+....+..
T Consensus 87 ~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~ 131 (201)
T PF13851_consen 87 SLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFE 131 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555555555555555555555554444443
No 431
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=45.95 E-value=76 Score=34.77 Aligned_cols=80 Identities=18% Similarity=0.211 Sum_probs=43.8
Q ss_pred CceEEEecCCchhhhHHHH-HHHhcCC-----------------------ceEEEEEc-ccCCcchhHHHHHHHHHHhcc
Q psy4724 76 GHAMLITIGGSGAAEVTKL-ATFMNEY-----------------------VLFEIEIL-KTYGLTDWRDDLCRLMKKSGG 130 (1650)
Q Consensus 76 G~alLvGvgGSGrqSLtrL-Aafi~~~-----------------------~~fqIeit-k~Yg~~~f~eDLk~l~~~~g~ 130 (1650)
+..||.|..|+||.++++. |..+.+- ++..+... ..++..++++ +-..+....
T Consensus 15 ~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~~~~~~~i~~-i~~~~~~~~- 92 (188)
T TIGR00678 15 HAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQSIKVDQVRE-LVEFLSRTP- 92 (188)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccCcCCHHHHHH-HHHHHccCc-
Confidence 3478999999999999875 4554321 23333322 2344444443 222222222
Q ss_pred CCCCCEEEEEecCCcCchhhHHHHHHHHhh
Q psy4724 131 KDAKPMTFLFSDTQIQNEVFVEHINMLLNT 160 (1650)
Q Consensus 131 ~~~k~~vFl~tD~qI~~E~fLedIN~lL~t 160 (1650)
..+...++++.|.+-.... ..|.||..
T Consensus 93 ~~~~~kviiide~~~l~~~---~~~~Ll~~ 119 (188)
T TIGR00678 93 QESGRRVVIIEDAERMNEA---AANALLKT 119 (188)
T ss_pred ccCCeEEEEEechhhhCHH---HHHHHHHH
Confidence 2466778888887654442 24556654
No 432
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=45.93 E-value=1.6e+02 Score=34.09 Aligned_cols=54 Identities=4% Similarity=0.208 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4724 762 LAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCK 815 (1650)
Q Consensus 762 l~~~e~~l~~~~~~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~ 815 (1650)
+...+..+...+......+.+|..+..++..++.+.++...+..+++.++...+
T Consensus 33 i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~ 86 (265)
T COG3883 33 IQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQ 86 (265)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444444444444444444444443333
No 433
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=45.92 E-value=14 Score=40.79 Aligned_cols=24 Identities=17% Similarity=0.250 Sum_probs=20.3
Q ss_pred CCCceEEEecCCchhhhHHHHHHH
Q psy4724 74 PKGHAMLITIGGSGAAEVTKLATF 97 (1650)
Q Consensus 74 p~G~alLvGvgGSGrqSLtrLAaf 97 (1650)
|+....|+|..||||.||.++-+=
T Consensus 32 ~Ge~~~l~G~nGsGKSTLl~~l~G 55 (192)
T cd03232 32 PGTLTALMGESGAGKTTLLDVLAG 55 (192)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhC
Confidence 455778999999999999998763
No 434
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=45.72 E-value=2.3e+02 Score=38.21 Aligned_cols=74 Identities=22% Similarity=0.325 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhhhchhhccHHHHHHHHHHHH
Q psy4724 774 EKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKLERAEK-------LIGGLGGEKTRWSEASANLSKAL 846 (1650)
Q Consensus 774 ~~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~~-------Li~~L~~E~~rW~~~~~~~~~~~ 846 (1650)
.+|......-.+...+++.|+.++....+++..|+.+++....+|+++.. -+..+..|+.|-...+..+...+
T Consensus 308 t~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~ 387 (775)
T PF10174_consen 308 TRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDML 387 (775)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334445555555555555555555555555555555555544 44455566666665555555444
Q ss_pred h
Q psy4724 847 V 847 (1650)
Q Consensus 847 ~ 847 (1650)
.
T Consensus 388 d 388 (775)
T PF10174_consen 388 D 388 (775)
T ss_pred H
Confidence 3
No 435
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=45.71 E-value=15 Score=41.79 Aligned_cols=26 Identities=12% Similarity=0.231 Sum_probs=21.2
Q ss_pred CCCceEEEecCCchhhhHHHHHHHhc
Q psy4724 74 PKGHAMLITIGGSGAAEVTKLATFMN 99 (1650)
Q Consensus 74 p~G~alLvGvgGSGrqSLtrLAafi~ 99 (1650)
|+....|+|+.||||.||.|+-+=+.
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 57 (225)
T PRK10247 32 AGEFKLITGPSGCGKSTLLKIVASLI 57 (225)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 44477899999999999999876543
No 436
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=45.70 E-value=15 Score=41.45 Aligned_cols=26 Identities=15% Similarity=0.152 Sum_probs=21.5
Q ss_pred CCCceEEEecCCchhhhHHHHHHHhc
Q psy4724 74 PKGHAMLITIGGSGAAEVTKLATFMN 99 (1650)
Q Consensus 74 p~G~alLvGvgGSGrqSLtrLAafi~ 99 (1650)
|+.+..|+|..||||.||.|+.+=+.
T Consensus 29 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 54 (221)
T cd03244 29 PGEKVGIVGRTGSGKSSLLLALFRLV 54 (221)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 44588899999999999999887543
No 437
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=45.62 E-value=15 Score=42.28 Aligned_cols=25 Identities=16% Similarity=0.139 Sum_probs=20.6
Q ss_pred CCCceEEEecCCchhhhHHHHHHHh
Q psy4724 74 PKGHAMLITIGGSGAAEVTKLATFM 98 (1650)
Q Consensus 74 p~G~alLvGvgGSGrqSLtrLAafi 98 (1650)
|+....|+|..||||.||.|+-+=+
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 25 KGEIHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4447889999999999999986543
No 438
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=45.59 E-value=15 Score=42.10 Aligned_cols=25 Identities=24% Similarity=0.375 Sum_probs=21.0
Q ss_pred CCCceEEEecCCchhhhHHHHHHHh
Q psy4724 74 PKGHAMLITIGGSGAAEVTKLATFM 98 (1650)
Q Consensus 74 p~G~alLvGvgGSGrqSLtrLAafi 98 (1650)
|+....|+|..||||.||.|+-+=+
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 50 (236)
T TIGR03864 26 PGEFVALLGPNGAGKSTLFSLLTRL 50 (236)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 5567789999999999999987644
No 439
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=45.53 E-value=16 Score=39.35 Aligned_cols=26 Identities=12% Similarity=0.230 Sum_probs=21.6
Q ss_pred CCCceEEEecCCchhhhHHHHHHHhc
Q psy4724 74 PKGHAMLITIGGSGAAEVTKLATFMN 99 (1650)
Q Consensus 74 p~G~alLvGvgGSGrqSLtrLAafi~ 99 (1650)
|+....++|..||||.||.|+-+=+.
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGLW 51 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 55588999999999999999876543
No 440
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=45.47 E-value=25 Score=40.12 Aligned_cols=40 Identities=13% Similarity=0.303 Sum_probs=26.0
Q ss_pred hHHHHHHHHHHHHHhcCCCC--ceEEEecCCchhhhHHH-HHHHhc
Q psy4724 57 FLYIIQHISRLCRILQQPKG--HAMLITIGGSGAAEVTK-LATFMN 99 (1650)
Q Consensus 57 F~~ai~Hv~rI~Ril~~p~G--~alLvGvgGSGrqSLtr-LAafi~ 99 (1650)
|...++|+..+++ .+.+ -..|+|.+||||.+|++ |+..+.
T Consensus 16 ~~~l~~~~~~~~~---~~~~~~iigi~G~~GsGKTTl~~~L~~~l~ 58 (229)
T PRK09270 16 HKPLLRRLAALQA---EPQRRTIVGIAGPPGAGKSTLAEFLEALLQ 58 (229)
T ss_pred HHHHHHHHHHHHh---cCCCCEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4455555555554 3222 34577999999999998 666664
No 441
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=45.45 E-value=1.7e+02 Score=31.17 Aligned_cols=71 Identities=17% Similarity=0.242 Sum_probs=54.3
Q ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4724 748 YDRVIKIVGPKKAKLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKL 818 (1650)
Q Consensus 748 Y~~v~~~v~P~~~~l~~~e~~l~~~~~~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl 818 (1650)
|..-...+.-.+...+..-.....+...|...+..-..|.++-..+..+.+....++.+|+.-++.+..+|
T Consensus 2 y~~y~~~L~~~~~~~~~ll~~~~~~~~~l~~l~~~~~~Vs~kT~~l~~~ce~Ll~eq~~L~~~ae~I~~~L 72 (157)
T PF04136_consen 2 YRQYLDYLQQYREECDQLLDQTDEILDQLDELQEQYNSVSEKTNSLHEACEQLLEEQTRLEELAEEISEKL 72 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33334444555567777777777888888888888888888888888888888888888888888888777
No 442
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=45.44 E-value=15 Score=41.29 Aligned_cols=27 Identities=19% Similarity=0.292 Sum_probs=21.1
Q ss_pred cCCCC-ceEEEecCCchhhhHHHHHHHh
Q psy4724 72 QQPKG-HAMLITIGGSGAAEVTKLATFM 98 (1650)
Q Consensus 72 ~~p~G-~alLvGvgGSGrqSLtrLAafi 98 (1650)
..+.| ...|+|..||||.||.++-+=+
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03259 22 TVEPGEFLALLGPSGCGKTTLLRLIAGL 49 (213)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 44445 6779999999999999976544
No 443
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=45.40 E-value=1.9e+02 Score=28.62 Aligned_cols=60 Identities=20% Similarity=0.245 Sum_probs=28.6
Q ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4724 748 YDRVIKIVGPKKAKLAEAEADYAVQMEKLNSK--RAQLATVLGKLQALRDELAQKSKDKKELE 808 (1650)
Q Consensus 748 Y~~v~~~v~P~~~~l~~~e~~l~~~~~~L~~~--~~~l~~~~~~l~~l~~~~~~~~~e~~~l~ 808 (1650)
|.. ...+.-..+++...+..+...+.+++.. ++.+..++-.+++++-+.+...++.+.+.
T Consensus 31 ~a~-~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~ 92 (106)
T PF10805_consen 31 YAK-REDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVS 92 (106)
T ss_pred hcc-HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 444 3445555455555555555555555443 44444444444444444444444444333
No 444
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=45.34 E-value=1.7e+02 Score=34.46 Aligned_cols=82 Identities=17% Similarity=0.322 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhccHHH
Q psy4724 758 KKAKLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKLERAEKLIGGLGGEKTRWSE 837 (1650)
Q Consensus 758 ~~~~l~~~e~~l~~~~~~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~~Li~~L~~E~~rW~~ 837 (1650)
...++..+...|+...++....+.++..+..++..++..+.....|.++|...+..++..- ..|..-|.+-+.|..+
T Consensus 211 An~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q---~~L~aEL~elqdkY~E 287 (306)
T PF04849_consen 211 ANQQIASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQ---RQLQAELQELQDKYAE 287 (306)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 3345555555555556666666666666666666666666666666666665554443221 2244445555555555
Q ss_pred HHHHH
Q psy4724 838 ASANL 842 (1650)
Q Consensus 838 ~~~~~ 842 (1650)
...-+
T Consensus 288 ~~~mL 292 (306)
T PF04849_consen 288 CMAML 292 (306)
T ss_pred HHHHH
Confidence 44433
No 445
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=45.31 E-value=15 Score=41.39 Aligned_cols=35 Identities=17% Similarity=0.158 Sum_probs=24.8
Q ss_pred CCCceEEEecCCchhhhHHHHHHHhcCCceEEEEE
Q psy4724 74 PKGHAMLITIGGSGAAEVTKLATFMNEYVLFEIEI 108 (1650)
Q Consensus 74 p~G~alLvGvgGSGrqSLtrLAafi~~~~~fqIei 108 (1650)
|+....|+|..||||.||.|+-+=+...+-=+|.+
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~ 62 (216)
T TIGR00960 28 KGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRF 62 (216)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence 45577899999999999999877554333334433
No 446
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=45.26 E-value=22 Score=46.78 Aligned_cols=44 Identities=23% Similarity=0.289 Sum_probs=31.5
Q ss_pred ceeehHHHHHHHHHHHHHhcCC-CCceEEEecCCchhhhHHHHHHHhc
Q psy4724 53 DIVTFLYIIQHISRLCRILQQP-KGHAMLITIGGSGAAEVTKLATFMN 99 (1650)
Q Consensus 53 ~lVlF~~ai~Hv~rI~Ril~~p-~G~alLvGvgGSGrqSLtrLAafi~ 99 (1650)
++|--..++.++.+ ++ ..| ..|.+|+|.+|+||.+|+|+.....
T Consensus 155 ~iiGqs~~~~~l~~--~i-a~~~~~~vlL~Gp~GtGKTTLAr~i~~~~ 199 (615)
T TIGR02903 155 EIVGQERAIKALLA--KV-ASPFPQHIILYGPPGVGKTTAARLALEEA 199 (615)
T ss_pred hceeCcHHHHHHHH--HH-hcCCCCeEEEECCCCCCHHHHHHHHHHhh
Confidence 45666667776543 23 334 4589999999999999999876543
No 447
>KOG0249|consensus
Probab=45.09 E-value=3e+02 Score=35.81 Aligned_cols=93 Identities=20% Similarity=0.168 Sum_probs=64.4
Q ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4724 751 VIKIVGPKKAKLAEAEADYAVQMEKLNSKRAQLA-----------TVLGKLQALRDELAQKSKDKKELEDQIELCKQKLE 819 (1650)
Q Consensus 751 v~~~v~P~~~~l~~~e~~l~~~~~~L~~~~~~l~-----------~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ 819 (1650)
......|..+++..++.++++..++|...++.+. .+++.++.-..+..++.++++.|..+.+.+.+++.
T Consensus 154 aee~~~~~eer~~kl~~~~qe~naeL~rarqreemneeh~~rlsdtvdErlqlhlkermaAle~kn~L~~e~~s~kk~l~ 233 (916)
T KOG0249|consen 154 AEEHSGNIEERTRKLEEQLEELNAELQRARQREKMNEEHNKRLSDTVDERLQLHLKERMAALEDKNRLEQELESVKKQLE 233 (916)
T ss_pred HHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666777777777777777766665543 24566676677777788888888888888888888
Q ss_pred HHHHHHhhhchhhccHHHHHHHHH
Q psy4724 820 RAEKLIGGLGGEKTRWSEASANLS 843 (1650)
Q Consensus 820 ra~~Li~~L~~E~~rW~~~~~~~~ 843 (1650)
.+...-..|....++-...++++.
T Consensus 234 ~~~~~k~rl~~d~E~Lr~e~~qL~ 257 (916)
T KOG0249|consen 234 EMRHDKDKLRTDIEDLRGELDQLR 257 (916)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHH
Confidence 777777777666666666665555
No 448
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=45.08 E-value=33 Score=38.83 Aligned_cols=58 Identities=22% Similarity=0.297 Sum_probs=38.9
Q ss_pred hcCCCCceE-EEecCCchhhhHHHHHHHhcCCceEEEEEcccCCcchhHH-HHHHHHHHhc
Q psy4724 71 LQQPKGHAM-LITIGGSGAAEVTKLATFMNEYVLFEIEILKTYGLTDWRD-DLCRLMKKSG 129 (1650)
Q Consensus 71 l~~p~G~al-LvGvgGSGrqSLtrLAafi~~~~~fqIeitk~Yg~~~f~e-DLk~l~~~~g 129 (1650)
|.-|+|.++ ++|.+||||.+|.|+-.=.-.-+-=+|.+- +.++...-| ++..+-++.|
T Consensus 29 l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~-G~~i~~ls~~~~~~ir~r~G 88 (263)
T COG1127 29 LDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILID-GEDIPQLSEEELYEIRKRMG 88 (263)
T ss_pred eeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEc-CcchhccCHHHHHHHHhhee
Confidence 356888765 789999999999999876654444455554 344544444 4546666666
No 449
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=45.05 E-value=1.8e+02 Score=35.20 Aligned_cols=60 Identities=18% Similarity=0.227 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4724 760 AKLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKLERAEKLIG 826 (1650)
Q Consensus 760 ~~l~~~e~~l~~~~~~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~~Li~ 826 (1650)
.+++.++.++..++.++...+. .+..++.+.+....+.+..+.+++..+..++|.+.|..
T Consensus 80 ~~l~~a~a~l~~~~~~~~~~~~-------~~~~~~~~i~~~~~~~~~a~~~l~~a~~~~~r~~~L~~ 139 (334)
T TIGR00998 80 LALAKAEANLAALVRQTKQLEI-------TVQQLQAKVESLKIKLEQAREKLLQAELDLRRRVPLFK 139 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3445555555544444444443 33444444444444444555555566666666666653
No 450
>KOG3794|consensus
Probab=44.96 E-value=17 Score=42.86 Aligned_cols=8 Identities=13% Similarity=0.347 Sum_probs=4.0
Q ss_pred hcCCCccc
Q psy4724 1347 NLGEQYIV 1354 (1650)
Q Consensus 1347 ~lG~~~~~ 1354 (1650)
.+|..|..
T Consensus 65 K~~~sFMY 72 (453)
T KOG3794|consen 65 KNGLSFMY 72 (453)
T ss_pred hcccceee
Confidence 34555543
No 451
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=44.94 E-value=16 Score=39.82 Aligned_cols=25 Identities=24% Similarity=0.213 Sum_probs=20.7
Q ss_pred CCCceEEEecCCchhhhHHHHHHHh
Q psy4724 74 PKGHAMLITIGGSGAAEVTKLATFM 98 (1650)
Q Consensus 74 p~G~alLvGvgGSGrqSLtrLAafi 98 (1650)
|+.+..++|..||||.||.|+-+=+
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~ 51 (178)
T cd03247 27 QGEKIALLGRSGSGKSTLLQLLTGD 51 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 4558889999999999999886644
No 452
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=44.92 E-value=15 Score=42.61 Aligned_cols=25 Identities=12% Similarity=0.178 Sum_probs=20.8
Q ss_pred CCCceEEEecCCchhhhHHHHHHHh
Q psy4724 74 PKGHAMLITIGGSGAAEVTKLATFM 98 (1650)
Q Consensus 74 p~G~alLvGvgGSGrqSLtrLAafi 98 (1650)
|+....|+|..||||.||.|+-+=+
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (255)
T PRK11248 26 SGELLVVLGPSGCGKTTLLNLIAGF 50 (255)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4557889999999999999987644
No 453
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=44.88 E-value=13 Score=41.89 Aligned_cols=38 Identities=16% Similarity=0.169 Sum_probs=27.4
Q ss_pred cCCCC-ceEEEecCCchhhhHHHHHHHhcCCceEEEEEc
Q psy4724 72 QQPKG-HAMLITIGGSGAAEVTKLATFMNEYVLFEIEIL 109 (1650)
Q Consensus 72 ~~p~G-~alLvGvgGSGrqSLtrLAafi~~~~~fqIeit 109 (1650)
.-.+| -.=|||..||||.||+|+-+=+..-..=+|.+.
T Consensus 29 ~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~ 67 (252)
T COG1124 29 EIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLD 67 (252)
T ss_pred EecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEEC
Confidence 44455 445999999999999998777665555555444
No 454
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=44.69 E-value=2.3e+02 Score=27.57 Aligned_cols=38 Identities=24% Similarity=0.294 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHhhhchhhccHHHHHHHHHHHHhhchh
Q psy4724 814 CKQKLERAEKLIGGLGGEKTRWSEASANLSKALVNCIG 851 (1650)
Q Consensus 814 ~~~rl~ra~~Li~~L~~E~~rW~~~~~~~~~~~~~l~G 851 (1650)
++.+.+..+.-+..|......+...+..++..+..++|
T Consensus 67 L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l~~~~~ 104 (106)
T PF01920_consen 67 LEERIEKLEKEIKKLEKQLKYLEKKLKELKKKLYELFG 104 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33444444444455555555555555555555555544
No 455
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=44.66 E-value=18 Score=39.50 Aligned_cols=28 Identities=14% Similarity=0.194 Sum_probs=20.5
Q ss_pred ceEEEecCCchhhhHHHHHHHhcCCceEEE
Q psy4724 77 HAMLITIGGSGAAEVTKLATFMNEYVLFEI 106 (1650)
Q Consensus 77 ~alLvGvgGSGrqSLtrLAafi~~~~~fqI 106 (1650)
..+++|.+||||-|+++.=|=- +.+.+|
T Consensus 2 riiilG~pGaGK~T~A~~La~~--~~i~hl 29 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK--LGLPHL 29 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH--hCCcEE
Confidence 3689999999999997543332 566666
No 456
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=44.66 E-value=3.7e+02 Score=27.71 Aligned_cols=59 Identities=25% Similarity=0.408 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhccHHHHHHHHHHHHhh
Q psy4724 787 LGKLQALRDELAQKSKDKKELEDQIELCKQKLERAEKLIGGLGGEKTRWSEASANLSKALVN 848 (1650)
Q Consensus 787 ~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~~Li~~L~~E~~rW~~~~~~~~~~~~~ 848 (1650)
-+.|..++.++.....+...|+.+++.+...|..++. +...++..-...+..++.++.-
T Consensus 58 ~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~---sw~~qk~~le~e~~~~~~r~~d 116 (132)
T PF07926_consen 58 IKELQQLREELQELQQEINELKAEAESAKAELEESEA---SWEEQKEQLEKELSELEQRIED 116 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555555555544333 2334444455555555444443
No 457
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=44.52 E-value=2.2e+02 Score=31.43 Aligned_cols=48 Identities=15% Similarity=0.214 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4724 764 EAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQI 811 (1650)
Q Consensus 764 ~~e~~l~~~~~~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~ 811 (1650)
.++..+.+....+......+.+++.+|-+|+.+......+++....++
T Consensus 114 ~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei 161 (190)
T PF05266_consen 114 KLEKKIEEKEAELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEI 161 (190)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444445555555555555555555444444444333333
No 458
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=44.49 E-value=38 Score=43.97 Aligned_cols=82 Identities=15% Similarity=0.182 Sum_probs=51.6
Q ss_pred CCceEEEecCCchhhhHHHHHHHhcCCceEEEE--Ec-----------ccCCcchhHHHHHHHHHHhccCCCCCEEEEEe
Q psy4724 75 KGHAMLITIGGSGAAEVTKLATFMNEYVLFEIE--IL-----------KTYGLTDWRDDLCRLMKKSGGKDAKPMTFLFS 141 (1650)
Q Consensus 75 ~G~alLvGvgGSGrqSLtrLAafi~~~~~fqIe--it-----------k~Yg~~~f~eDLk~l~~~~g~~~~k~~vFl~t 141 (1650)
++...|||..||||.|+.|+.|-..|+.++-+. +. ..||...||+==..++.... ...+.|+-.+
T Consensus 6 ~~~i~LiG~~GaGKttvg~~LA~~L~~~fiD~D~~ie~~~g~si~eif~~~Ge~~FR~~E~~~l~~~~--~~~~~VIs~G 83 (542)
T PRK14021 6 RPQAVIIGMMGAGKTRVGKEVAQMMRLPFADADVEIEREIGMSIPSYFEEYGEPAFREVEADVVADML--EDFDGIFSLG 83 (542)
T ss_pred CccEEEECCCCCCHHHHHHHHHHHhCCCEEEchHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHHHHH--hcCCeEEECC
Confidence 578999999999999999999999999887653 22 24666677763335555433 2344554344
Q ss_pred cCCcCchhhHHHHHHHH
Q psy4724 142 DTQIQNEVFVEHINMLL 158 (1650)
Q Consensus 142 D~qI~~E~fLedIN~lL 158 (1650)
-.-+.++.-.+.+..++
T Consensus 84 GG~v~~~~n~~~L~~~~ 100 (542)
T PRK14021 84 GGAPMTPSTQHALASYI 100 (542)
T ss_pred CchhCCHHHHHHHHHHH
Confidence 44444443333333333
No 459
>KOG1029|consensus
Probab=44.46 E-value=1.1e+02 Score=39.65 Aligned_cols=77 Identities=10% Similarity=0.148 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhccHHHHHHHHHHHHhh
Q psy4724 772 QMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKLERAEKLIGGLGGEKTRWSEASANLSKALVN 848 (1650)
Q Consensus 772 ~~~~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~~Li~~L~~E~~rW~~~~~~~~~~~~~ 848 (1650)
...+....++.+-.+.++..+|+.+++...-++++|...+..+..++..+..-|.++.+-+++=...+.++..+++.
T Consensus 421 m~~Qk~reqe~iv~~nak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE 497 (1118)
T KOG1029|consen 421 MLNQKNREQEWIVYLNAKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKE 497 (1118)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 33344445555666778888888888888888888888888888888888888888888777777777776666654
No 460
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=44.46 E-value=1e+02 Score=37.13 Aligned_cols=94 Identities=20% Similarity=0.166 Sum_probs=61.6
Q ss_pred HHHHHHHhcCCC-CceE-EEecCCchhhhHHH-HHHHhc-C---------------------CceEEEEEc---ccCCcc
Q psy4724 64 ISRLCRILQQPK-GHAM-LITIGGSGAAEVTK-LATFMN-E---------------------YVLFEIEIL---KTYGLT 115 (1650)
Q Consensus 64 v~rI~Ril~~p~-G~al-LvGvgGSGrqSLtr-LAafi~-~---------------------~~~fqIeit---k~Yg~~ 115 (1650)
..++.+.+++.| .||+ +.|.-|.||.++++ +|.++. . -+++.|... +..++.
T Consensus 12 ~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~vd 91 (319)
T PRK06090 12 WQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEKEGKSITVE 91 (319)
T ss_pred HHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCcCCCcCCHH
Confidence 445666666655 4665 66999999999984 555552 1 146667653 457777
Q ss_pred hhHHHHHHHHHHhccCCCCCEEEEEecCCcCchhhHHHHHHHHhhhh
Q psy4724 116 DWRDDLCRLMKKSGGKDAKPMTFLFSDTQIQNEVFVEHINMLLNTAR 162 (1650)
Q Consensus 116 ~f~eDLk~l~~~~g~~~~k~~vFl~tD~qI~~E~fLedIN~lL~tge 162 (1650)
+.|+ +...+..+. ..++.-||++.+.+-.++ +--|.||-|=|
T Consensus 92 qiR~-l~~~~~~~~-~~~~~kV~iI~~ae~m~~---~AaNaLLKtLE 133 (319)
T PRK06090 92 QIRQ-CNRLAQESS-QLNGYRLFVIEPADAMNE---SASNALLKTLE 133 (319)
T ss_pred HHHH-HHHHHhhCc-ccCCceEEEecchhhhCH---HHHHHHHHHhc
Confidence 7775 434444444 356777999999886443 44588998854
No 461
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=44.46 E-value=40 Score=34.85 Aligned_cols=36 Identities=11% Similarity=-0.046 Sum_probs=26.8
Q ss_pred HHHHHHhcCCCCceEEEecCCchhhhHHHHHHHhcCC
Q psy4724 65 SRLCRILQQPKGHAMLITIGGSGAAEVTKLATFMNEY 101 (1650)
Q Consensus 65 ~rI~Ril~~p~G~alLvGvgGSGrqSLtrLAafi~~~ 101 (1650)
.+|++.| .|+...+|.|.-|+||.+++|--+-..|+
T Consensus 13 ~~l~~~l-~~~~~i~l~G~lGaGKTtl~~~l~~~lg~ 48 (133)
T TIGR00150 13 KAFAKPL-DFGTVVLLKGDLGAGKTTLVQGLLQGLGI 48 (133)
T ss_pred HHHHHhC-CCCCEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 3455544 45668889999999999999977766554
No 462
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=44.39 E-value=16 Score=41.24 Aligned_cols=26 Identities=15% Similarity=0.218 Sum_probs=21.8
Q ss_pred CCCceEEEecCCchhhhHHHHHHHhc
Q psy4724 74 PKGHAMLITIGGSGAAEVTKLATFMN 99 (1650)
Q Consensus 74 p~G~alLvGvgGSGrqSLtrLAafi~ 99 (1650)
|+....|+|..||||.||.++-+=+.
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (218)
T cd03266 30 PGEVTGLLGPNGAGKTTTLRMLAGLL 55 (218)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCc
Confidence 44578899999999999999987654
No 463
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=44.38 E-value=16 Score=42.42 Aligned_cols=25 Identities=20% Similarity=0.224 Sum_probs=21.5
Q ss_pred CCCceEEEecCCchhhhHHHHHHHh
Q psy4724 74 PKGHAMLITIGGSGAAEVTKLATFM 98 (1650)
Q Consensus 74 p~G~alLvGvgGSGrqSLtrLAafi 98 (1650)
|+....|+|..||||.||.++-+=+
T Consensus 31 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 55 (253)
T PRK14261 31 KNRVTALIGPSGCGKSTLLRCFNRM 55 (253)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcc
Confidence 4558889999999999999998744
No 464
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=44.36 E-value=16 Score=41.48 Aligned_cols=26 Identities=27% Similarity=0.337 Sum_probs=22.2
Q ss_pred CCCceEEEecCCchhhhHHHHHHHhc
Q psy4724 74 PKGHAMLITIGGSGAAEVTKLATFMN 99 (1650)
Q Consensus 74 p~G~alLvGvgGSGrqSLtrLAafi~ 99 (1650)
|+....|+|..||||.||.|+.+=+.
T Consensus 39 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 64 (226)
T cd03248 39 PGEVTALVGPSGSGKSTVVALLENFY 64 (226)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 45588999999999999999887664
No 465
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=44.35 E-value=2.3e+02 Score=30.79 Aligned_cols=99 Identities=17% Similarity=0.219 Sum_probs=49.5
Q ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHH
Q psy4724 748 YDRVIKIVGPKKAKLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCK-----QKLERAE 822 (1650)
Q Consensus 748 Y~~v~~~v~P~~~~l~~~e~~l~~~~~~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~-----~rl~ra~ 822 (1650)
|......+.=.+.++..+.........+|...+..+..+.+.+...+.+.+........|..+..... .-.++..
T Consensus 72 ~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~~~~~~P~ll~Dy~~~~ 151 (177)
T PF13870_consen 72 IGKTVQILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQQGGLLGVPALLRDYDKTK 151 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHH
Confidence 33444444444555555555555555555555555555555555555555555555544444332211 1133444
Q ss_pred HHHhhhchhhccHHHHHHHHHHHH
Q psy4724 823 KLIGGLGGEKTRWSEASANLSKAL 846 (1650)
Q Consensus 823 ~Li~~L~~E~~rW~~~~~~~~~~~ 846 (1650)
.-+..|..+...|...+..++..+
T Consensus 152 ~~~~~l~~~i~~l~rk~~~l~~~i 175 (177)
T PF13870_consen 152 EEVEELRKEIKELERKVEILEMRI 175 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444555555566666666655443
No 466
>KOG4657|consensus
Probab=44.34 E-value=3.3e+02 Score=30.41 Aligned_cols=38 Identities=21% Similarity=0.211 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhchhhccHHHHHH
Q psy4724 803 DKKELEDQIELCKQKLERAEKLIGGLGGEKTRWSEASA 840 (1650)
Q Consensus 803 e~~~l~~~~~~~~~rl~ra~~Li~~L~~E~~rW~~~~~ 840 (1650)
....+++++...+.++++-.+-+.-|..|..+-.+-+.
T Consensus 87 ~q~~ieqeik~~q~elEvl~~n~Q~lkeE~dd~keiIs 124 (246)
T KOG4657|consen 87 RQMGIEQEIKATQSELEVLRRNLQLLKEEKDDSKEIIS 124 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 33445555555666666666666666666665544433
No 467
>PRK14530 adenylate kinase; Provisional
Probab=44.33 E-value=22 Score=40.07 Aligned_cols=27 Identities=11% Similarity=0.027 Sum_probs=21.2
Q ss_pred ceEEEecCCchhhhHHHHHHHhcCCce
Q psy4724 77 HAMLITIGGSGAAEVTKLATFMNEYVL 103 (1650)
Q Consensus 77 ~alLvGvgGSGrqSLtrLAafi~~~~~ 103 (1650)
+.+++|..||||.|++++-|-.-|+..
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~~~~ 31 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFGVEH 31 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeE
Confidence 689999999999999886654445543
No 468
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=44.32 E-value=16 Score=41.95 Aligned_cols=25 Identities=20% Similarity=0.311 Sum_probs=20.7
Q ss_pred CCCceEEEecCCchhhhHHHHHHHh
Q psy4724 74 PKGHAMLITIGGSGAAEVTKLATFM 98 (1650)
Q Consensus 74 p~G~alLvGvgGSGrqSLtrLAafi 98 (1650)
|+....|+|..||||.||.++-+=+
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (241)
T cd03256 26 PGEFVALIGPSGAGKSTLLRCLNGL 50 (241)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4457889999999999999977644
No 469
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=44.22 E-value=22 Score=44.48 Aligned_cols=25 Identities=28% Similarity=0.353 Sum_probs=20.6
Q ss_pred CCceEEEecCCchhhh-HHHHHHHhc
Q psy4724 75 KGHAMLITIGGSGAAE-VTKLATFMN 99 (1650)
Q Consensus 75 ~G~alLvGvgGSGrqS-LtrLAafi~ 99 (1650)
++..++||++|+||.| +++||+..+
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~ 246 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYA 246 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5678999999999995 467888765
No 470
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=44.13 E-value=16 Score=41.55 Aligned_cols=25 Identities=16% Similarity=0.157 Sum_probs=20.9
Q ss_pred CCCceEEEecCCchhhhHHHHHHHh
Q psy4724 74 PKGHAMLITIGGSGAAEVTKLATFM 98 (1650)
Q Consensus 74 p~G~alLvGvgGSGrqSLtrLAafi 98 (1650)
|+....|+|..||||.||.++-+=+
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 54 (228)
T cd03257 30 KGETLGLVGESGSGKSTLARAILGL 54 (228)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3448999999999999999987644
No 471
>TIGR03743 SXT_TraD conjugative coupling factor TraD, SXT/TOL subfamily. Members of this protein family are the putative conjugative coupling factor, TraD (or TraG), rather distantly related to the well-characterized TraD of the F plasmid. Members are associated with conjugative-transposon-like mobile genetic elements of the class that includes SXT, an antibiotic resistance transfer element in some Vibrio cholerae strains.
Probab=44.09 E-value=43 Score=44.17 Aligned_cols=55 Identities=20% Similarity=0.362 Sum_probs=38.1
Q ss_pred CCCCceEEEecCCchhhhHHHH--HHHhc-CCceEEEEEcccCCcchhHHHHHHHHHHhcc
Q psy4724 73 QPKGHAMLITIGGSGAAEVTKL--ATFMN-EYVLFEIEILKTYGLTDWRDDLCRLMKKSGG 130 (1650)
Q Consensus 73 ~p~G~alLvGvgGSGrqSLtrL--Aafi~-~~~~fqIeitk~Yg~~~f~eDLk~l~~~~g~ 130 (1650)
-..||++++|..||||.+|..+ +.++. |..++-+. .-|-.++...+..+.+.+|+
T Consensus 174 ~~~~H~lv~G~TGsGKT~l~~~l~~q~i~~g~~viv~D---pKgD~~l~~~~~~~~~~~G~ 231 (634)
T TIGR03743 174 HRVGHTLVLGTTGVGKTRLAELLITQDIRRGDVVIVID---PKGDADLKRRMRAEAKRAGR 231 (634)
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe---CCCchHHHHHHHHHHHHhCC
Confidence 3479999999999999988632 22333 44444444 33555778889888888884
No 472
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=44.06 E-value=16 Score=41.48 Aligned_cols=34 Identities=18% Similarity=0.153 Sum_probs=25.5
Q ss_pred CCCceEEEecCCchhhhHHHHHHHhcCCceEEEE
Q psy4724 74 PKGHAMLITIGGSGAAEVTKLATFMNEYVLFEIE 107 (1650)
Q Consensus 74 p~G~alLvGvgGSGrqSLtrLAafi~~~~~fqIe 107 (1650)
|+....|+|..||||.||.++-+=+..-+-=+|.
T Consensus 35 ~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~ 68 (228)
T PRK10584 35 RGETIALIGESGSGKSTLLAILAGLDDGSSGEVS 68 (228)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEE
Confidence 5669999999999999999988765433333343
No 473
>KOG0995|consensus
Probab=44.05 E-value=2.5e+02 Score=35.67 Aligned_cols=35 Identities=20% Similarity=0.263 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHH
Q psy4724 1080 ESANNKKILKETEDKILEVLSSSQGNILEDESAVQ 1114 (1650)
Q Consensus 1080 ~~~~~k~~L~~lEd~lL~~L~~s~g~iLdd~~li~ 1114 (1650)
.....+..+..+|..++.+=..+...++++++++.
T Consensus 486 e~~k~~~E~e~le~~l~~l~l~~~~~m~~a~~~v~ 520 (581)
T KOG0995|consen 486 EWKKCRKEIEKLEEELLNLKLVLNTSMKEAEELVK 520 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677888888887765555444555555443
No 474
>KOG0979|consensus
Probab=44.03 E-value=2.1e+02 Score=38.80 Aligned_cols=90 Identities=22% Similarity=0.308 Sum_probs=50.3
Q ss_pred hHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4724 743 LAMEVYDRVIKIVGPKKAKLAEAEADYAVQMEKLNSKRA-------QLATVLGKLQALRDELAQKSKDKKELEDQIELCK 815 (1650)
Q Consensus 743 ~A~~~Y~~v~~~v~P~~~~l~~~e~~l~~~~~~L~~~~~-------~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~ 815 (1650)
++...|-.+.+.+.|.....++++.+..+...+...+.. .+.++-+++....+...+...+.+.++.+.+..+
T Consensus 259 r~k~~~r~l~k~~~pi~~~~eeLe~~~~et~~~~s~~~~~~~e~~~k~~~~~ek~~~~~~~v~~~~~~le~lk~~~~~rq 338 (1072)
T KOG0979|consen 259 RAKKELRKLEKEIKPIEDKKEELESEKKETRSKISQKQRELNEALAKVQEKFEKLKEIEDEVEEKKNKLESLKKAAEKRQ 338 (1072)
T ss_pred HHHHHHHHHHHhhhhhhhhhhhHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666677776666555555544444444444444 4444444444444455555555555666666666
Q ss_pred HHHHHHHHHHhhhchhh
Q psy4724 816 QKLERAEKLIGGLGGEK 832 (1650)
Q Consensus 816 ~rl~ra~~Li~~L~~E~ 832 (1650)
.++.+|.+-|..+.+|.
T Consensus 339 ~~i~~~~k~i~~~q~el 355 (1072)
T KOG0979|consen 339 KRIEKAKKMILDAQAEL 355 (1072)
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 66666666666655543
No 475
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=44.02 E-value=16 Score=41.78 Aligned_cols=26 Identities=19% Similarity=0.176 Sum_probs=21.6
Q ss_pred CCCceEEEecCCchhhhHHHHHHHhc
Q psy4724 74 PKGHAMLITIGGSGAAEVTKLATFMN 99 (1650)
Q Consensus 74 p~G~alLvGvgGSGrqSLtrLAafi~ 99 (1650)
|+....|+|..||||.||.|+-+=+.
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 25 RGEILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44478899999999999999887554
No 476
>PRK05642 DNA replication initiation factor; Validated
Probab=43.95 E-value=86 Score=35.89 Aligned_cols=90 Identities=14% Similarity=0.189 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHh-cCCCCceEEEecCCchhhhHHHHHHHh---cCCceEEEEEcccCCcchhHH---HHHHHHHHhccC
Q psy4724 59 YIIQHISRLCRIL-QQPKGHAMLITIGGSGAAEVTKLATFM---NEYVLFEIEILKTYGLTDWRD---DLCRLMKKSGGK 131 (1650)
Q Consensus 59 ~ai~Hv~rI~Ril-~~p~G~alLvGvgGSGrqSLtrLAafi---~~~~~fqIeitk~Yg~~~f~e---DLk~l~~~~g~~ 131 (1650)
.|++.+-++..-- .-+..+.+|.|..|+||..|.+-++.- .++.+.-+.. .+|.. ++.+-|..+
T Consensus 28 ~a~~~~~~~~~~~~~~~~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~------~~~~~~~~~~~~~~~~~--- 98 (234)
T PRK05642 28 AALGYVERLCEADAGWTESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPL------AELLDRGPELLDNLEQY--- 98 (234)
T ss_pred HHHHHHHHHhhccccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeH------HHHHhhhHHHHHhhhhC---
Confidence 4444444443311 112356789999999999998765532 2555554433 23332 222222221
Q ss_pred CCCCEEEEEecCCcC------chhhHHHHHHHHhhh
Q psy4724 132 DAKPMTFLFSDTQIQ------NEVFVEHINMLLNTA 161 (1650)
Q Consensus 132 ~~k~~vFl~tD~qI~------~E~fLedIN~lL~tg 161 (1650)
-++++.|=|.. ++.+..-+|.+...|
T Consensus 99 ----d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g 130 (234)
T PRK05642 99 ----ELVCLDDLDVIAGKADWEEALFHLFNRLRDSG 130 (234)
T ss_pred ----CEEEEechhhhcCChHHHHHHHHHHHHHHhcC
Confidence 25678887744 233555667766554
No 477
>COG5493 Uncharacterized conserved protein containing a coiled-coil domain [Function unknown]
Probab=43.95 E-value=3.1e+02 Score=29.83 Aligned_cols=27 Identities=37% Similarity=0.795 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhchhhccHHH
Q psy4724 808 EDQIELCKQKLERAEKLIGGLGGEKTRWSE 837 (1650)
Q Consensus 808 ~~~~~~~~~rl~ra~~Li~~L~~E~~rW~~ 837 (1650)
+.+...+..++.|.+.++++|+ .||.-
T Consensus 87 ~~~f~a~~edi~rlE~~i~~lg---aRwGi 113 (231)
T COG5493 87 EEEFRATKEDIKRLETIITGLG---ARWGI 113 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHhcc
Confidence 4555666677777778888775 47753
No 478
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=43.88 E-value=17 Score=41.70 Aligned_cols=26 Identities=23% Similarity=0.337 Sum_probs=22.0
Q ss_pred CCCceEEEecCCchhhhHHHHHHHhc
Q psy4724 74 PKGHAMLITIGGSGAAEVTKLATFMN 99 (1650)
Q Consensus 74 p~G~alLvGvgGSGrqSLtrLAafi~ 99 (1650)
|+....|+|..||||.||.++.+=+.
T Consensus 28 ~Ge~~~l~G~nGsGKSTLl~~i~G~~ 53 (238)
T cd03249 28 PGKTVALVGSSGCGKSTVVSLLERFY 53 (238)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHhccC
Confidence 45588999999999999999887553
No 479
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=43.78 E-value=16 Score=41.20 Aligned_cols=26 Identities=15% Similarity=0.216 Sum_probs=21.8
Q ss_pred CCCceEEEecCCchhhhHHHHHHHhc
Q psy4724 74 PKGHAMLITIGGSGAAEVTKLATFMN 99 (1650)
Q Consensus 74 p~G~alLvGvgGSGrqSLtrLAafi~ 99 (1650)
|+....|+|..||||.||.++-+=+.
T Consensus 30 ~G~~~~i~G~nGsGKSTLl~~i~G~~ 55 (221)
T TIGR02211 30 KGEIVAIVGSSGSGKSTLLHLLGGLD 55 (221)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 56688899999999999999876553
No 480
>PRK06893 DNA replication initiation factor; Validated
Probab=43.73 E-value=98 Score=35.27 Aligned_cols=32 Identities=13% Similarity=0.040 Sum_probs=23.3
Q ss_pred ceEEEecCCchhhhHHHHHHHhc---CCceEEEEE
Q psy4724 77 HAMLITIGGSGAAEVTKLATFMN---EYVLFEIEI 108 (1650)
Q Consensus 77 ~alLvGvgGSGrqSLtrLAafi~---~~~~fqIei 108 (1650)
..+|.|..|+||..|++..+.-. +..+.-+..
T Consensus 41 ~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~ 75 (229)
T PRK06893 41 FFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPL 75 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeH
Confidence 46899999999999999987542 444444433
No 481
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=43.69 E-value=16 Score=41.70 Aligned_cols=26 Identities=12% Similarity=0.167 Sum_probs=21.3
Q ss_pred CCCceEEEecCCchhhhHHHHHHHhc
Q psy4724 74 PKGHAMLITIGGSGAAEVTKLATFMN 99 (1650)
Q Consensus 74 p~G~alLvGvgGSGrqSLtrLAafi~ 99 (1650)
|+....|+|..||||.||.|+-+=+.
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (232)
T PRK10771 24 RGERVAILGPSGAGKSTLLNLIAGFL 49 (232)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45577899999999999999876553
No 482
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=43.60 E-value=19 Score=40.04 Aligned_cols=29 Identities=17% Similarity=0.353 Sum_probs=24.3
Q ss_pred cCCCCceEEEecCCchhhhHHHHHHHhcC
Q psy4724 72 QQPKGHAMLITIGGSGAAEVTKLATFMNE 100 (1650)
Q Consensus 72 ~~p~G~alLvGvgGSGrqSLtrLAafi~~ 100 (1650)
..+.|-..|+|..||||.||.+.-+++.+
T Consensus 19 ~~~~g~~~i~G~nGsGKStll~al~~l~~ 47 (197)
T cd03278 19 PFPPGLTAIVGPNGSGKSNIIDAIRWVLG 47 (197)
T ss_pred ecCCCcEEEECCCCCCHHHHHHHHHHHhc
Confidence 44557788999999999999998888864
No 483
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=43.58 E-value=17 Score=41.81 Aligned_cols=26 Identities=12% Similarity=0.060 Sum_probs=22.0
Q ss_pred CCCceEEEecCCchhhhHHHHHHHhc
Q psy4724 74 PKGHAMLITIGGSGAAEVTKLATFMN 99 (1650)
Q Consensus 74 p~G~alLvGvgGSGrqSLtrLAafi~ 99 (1650)
|+....|+|..||||.||.|+-+=+.
T Consensus 28 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 53 (241)
T PRK10895 28 SGEIVGLLGPNGAGKTTTFYMVVGIV 53 (241)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 56688899999999999999877553
No 484
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=43.57 E-value=16 Score=41.85 Aligned_cols=25 Identities=16% Similarity=0.242 Sum_probs=21.2
Q ss_pred CCCceEEEecCCchhhhHHHHHHHh
Q psy4724 74 PKGHAMLITIGGSGAAEVTKLATFM 98 (1650)
Q Consensus 74 p~G~alLvGvgGSGrqSLtrLAafi 98 (1650)
|+....|+|..||||.||.++-+=+
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 50 (240)
T PRK09493 26 QGEVVVIIGPSGSGKSTLLRCINKL 50 (240)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 5668889999999999999877644
No 485
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=43.56 E-value=17 Score=42.56 Aligned_cols=26 Identities=19% Similarity=0.181 Sum_probs=22.4
Q ss_pred CCCceEEEecCCchhhhHHHHHHHhc
Q psy4724 74 PKGHAMLITIGGSGAAEVTKLATFMN 99 (1650)
Q Consensus 74 p~G~alLvGvgGSGrqSLtrLAafi~ 99 (1650)
|+.+..|+|..||||.||.++.+=+.
T Consensus 49 ~Ge~~~liG~NGsGKSTLlk~L~Gl~ 74 (264)
T PRK13546 49 EGDVIGLVGINGSGKSTLSNIIGGSL 74 (264)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 66688899999999999999987653
No 486
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=43.53 E-value=1.5e+02 Score=39.48 Aligned_cols=72 Identities=21% Similarity=0.274 Sum_probs=48.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchh
Q psy4724 757 PKKAKLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKLERAEKLIGGLGGE 831 (1650)
Q Consensus 757 P~~~~l~~~e~~l~~~~~~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~~Li~~L~~E 831 (1650)
..+.+..++|.++...+.+|..+++++..++.++++|+..-.+...+.+.|-..+..++.| +..|=+.|+.|
T Consensus 542 ~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk---~~~LE~sLsaE 613 (697)
T PF09726_consen 542 SCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALSAMQDK---NQHLENSLSAE 613 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH---HHHHHHhhhHH
Confidence 4677888889999999999999999999998888877765344445555555555555433 33344444444
No 487
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=43.50 E-value=39 Score=40.91 Aligned_cols=43 Identities=21% Similarity=0.256 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHhcC----CCCceEEEecCCchhhhHHH-HHHHhcCC
Q psy4724 59 YIIQHISRLCRILQQ----PKGHAMLITIGGSGAAEVTK-LATFMNEY 101 (1650)
Q Consensus 59 ~ai~Hv~rI~Ril~~----p~G~alLvGvgGSGrqSLtr-LAafi~~~ 101 (1650)
+|++-++.-.|...+ ++-=.+|+|+.||||.||++ ||.-+..|
T Consensus 58 ~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~y 105 (361)
T smart00763 58 EAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEEY 105 (361)
T ss_pred HHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhh
Confidence 455554443333322 23335999999999999976 44455454
No 488
>KOG0995|consensus
Probab=43.49 E-value=3.6e+02 Score=34.37 Aligned_cols=59 Identities=12% Similarity=0.306 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4724 765 AEADYAVQMEKLNSKRAQLATVLGKLQALRDE----------LAQKSKDKKELEDQIELCKQKLERAEK 823 (1650)
Q Consensus 765 ~e~~l~~~~~~L~~~~~~l~~~~~~l~~l~~~----------~~~~~~e~~~l~~~~~~~~~rl~ra~~ 823 (1650)
.+..++....++.+++.+++.+.+....|+.+ ++....|+++|+.++..++..+++-.+
T Consensus 292 ~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k 360 (581)
T KOG0995|consen 292 MEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSELDRLSK 360 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555544 455666666666666666655554444
No 489
>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed
Probab=43.41 E-value=20 Score=43.02 Aligned_cols=34 Identities=32% Similarity=0.414 Sum_probs=25.8
Q ss_pred EecCCchhhhHH-HHHHHhcCCceEEEEEcccCCc
Q psy4724 81 ITIGGSGAAEVT-KLATFMNEYVLFEIEILKTYGL 114 (1650)
Q Consensus 81 vGvgGSGrqSLt-rLAafi~~~~~fqIeitk~Yg~ 114 (1650)
++||||||..++ .||.++.....----++|+||-
T Consensus 57 i~vGGtGKTP~v~~L~~~l~~~g~~~~ilsRGYg~ 91 (325)
T PRK00652 57 ITVGGTGKTPVVIALAEQLQARGLKPGVVSRGYGG 91 (325)
T ss_pred eeCCCCChHHHHHHHHHHHHHCCCeEEEECCCCCC
Confidence 469999999985 5777776555555678999975
No 490
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=43.40 E-value=33 Score=39.62 Aligned_cols=47 Identities=6% Similarity=0.149 Sum_probs=31.2
Q ss_pred CCceEEEecCCchhhhHHHHHHHhcCC---ceE-EEEEc--ccCCcchhHHHH
Q psy4724 75 KGHAMLITIGGSGAAEVTKLATFMNEY---VLF-EIEIL--KTYGLTDWRDDL 121 (1650)
Q Consensus 75 ~G~alLvGvgGSGrqSLtrLAafi~~~---~~f-qIeit--k~Yg~~~f~eDL 121 (1650)
+..++++|.+|+||.+|.+--+..... ++. -+.+. ++++..+|.+++
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I 68 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSV 68 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHh
Confidence 457899999999999998776544332 222 23333 337777777666
No 491
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=43.39 E-value=2.4e+02 Score=25.04 Aligned_cols=41 Identities=17% Similarity=0.205 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4724 773 MEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIEL 813 (1650)
Q Consensus 773 ~~~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~ 813 (1650)
..+|...+......+.+|.+-.....+..++...|+.+++.
T Consensus 17 ~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee 57 (61)
T PF08826_consen 17 QEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEE 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444445555555555544
No 492
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=43.38 E-value=17 Score=41.29 Aligned_cols=26 Identities=12% Similarity=0.047 Sum_probs=22.0
Q ss_pred CCCceEEEecCCchhhhHHHHHHHhc
Q psy4724 74 PKGHAMLITIGGSGAAEVTKLATFMN 99 (1650)
Q Consensus 74 p~G~alLvGvgGSGrqSLtrLAafi~ 99 (1650)
|+....|+|..||||.||.|+.+=+.
T Consensus 5 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 30 (223)
T TIGR03771 5 KGELLGLLGPNGAGKTTLLRAILGLI 30 (223)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45688899999999999999977553
No 493
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=43.35 E-value=1.1e+02 Score=36.04 Aligned_cols=96 Identities=11% Similarity=0.066 Sum_probs=62.8
Q ss_pred HHHHHHHHHhcCCC-CceE-EEecCCchhhhHHH-HHHHhcC---------------CceEEEEEc---ccCCcchhHHH
Q psy4724 62 QHISRLCRILQQPK-GHAM-LITIGGSGAAEVTK-LATFMNE---------------YVLFEIEIL---KTYGLTDWRDD 120 (1650)
Q Consensus 62 ~Hv~rI~Ril~~p~-G~al-LvGvgGSGrqSLtr-LAafi~~---------------~~~fqIeit---k~Yg~~~f~eD 120 (1650)
.|..++.|.++.-+ .||+ +.|..|+||.++++ +|.++.. =+++.|... +..++.+-|+=
T Consensus 4 ~~~~~L~~~i~~~rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR~l 83 (290)
T PRK05917 4 AAWEALIQRVRDQKVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETPRAI 83 (290)
T ss_pred HHHHHHHHHHHcCCcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHHHHH
Confidence 35566677776654 6887 78999999999974 5555531 135555433 23677777653
Q ss_pred HHHHHHHhccCCCCCEEEEEecCCcCchhhHHHHHHHHhhhh
Q psy4724 121 LCRLMKKSGGKDAKPMTFLFSDTQIQNEVFVEHINMLLNTAR 162 (1650)
Q Consensus 121 Lk~l~~~~g~~~~k~~vFl~tD~qI~~E~fLedIN~lL~tge 162 (1650)
.+.++. .. ..++.-||++.|.+-..+ +--|.||-|=|
T Consensus 84 ~~~~~~-~p-~e~~~kv~ii~~ad~mt~---~AaNaLLK~LE 120 (290)
T PRK05917 84 KKQIWI-HP-YESPYKIYIIHEADRMTL---DAISAFLKVLE 120 (290)
T ss_pred HHHHhh-Cc-cCCCceEEEEechhhcCH---HHHHHHHHHhh
Confidence 334444 44 467788999999985332 45599998855
No 494
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=43.25 E-value=21 Score=39.26 Aligned_cols=28 Identities=14% Similarity=0.090 Sum_probs=20.3
Q ss_pred ceEEEecCCchhhhHHHHHHHhcCCceE
Q psy4724 77 HAMLITIGGSGAAEVTKLATFMNEYVLF 104 (1650)
Q Consensus 77 ~alLvGvgGSGrqSLtrLAafi~~~~~f 104 (1650)
+.+++|..||||.++++.-|-.-|+..+
T Consensus 1 ~I~i~G~pGsGKst~a~~La~~~~~~~i 28 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAKKYGLPHI 28 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCeEE
Confidence 3689999999999998765544344433
No 495
>cd07673 F-BAR_FCHO2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 2 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. The specific function of FCH domain Only 2 (FCHO2) is still unknown. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO1 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=43.21 E-value=3.3e+02 Score=31.90 Aligned_cols=39 Identities=13% Similarity=0.157 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHH----HHHhhhchhhccHHHHHHHHHHHHh
Q psy4724 809 DQIELCKQKLERAE----KLIGGLGGEKTRWSEASANLSKALV 847 (1650)
Q Consensus 809 ~~~~~~~~rl~ra~----~Li~~L~~E~~rW~~~~~~~~~~~~ 847 (1650)
.+++.++.++.+|. ..+..|...+.+|.+.....=..++
T Consensus 157 k~leK~~~k~~ka~~~Y~~~v~~l~~~~~~~~~~m~~~~~~~Q 199 (269)
T cd07673 157 REIEKAAVKSKKATESYKLYVEKYALAKADFEQKMTETAQKFQ 199 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445554443 4666777777888766554444333
No 496
>KOG0058|consensus
Probab=43.16 E-value=28 Score=45.26 Aligned_cols=58 Identities=21% Similarity=0.201 Sum_probs=36.8
Q ss_pred CCCceEEEecCCchhhhHHHHHHHhcCCceEEEEEc----ccCCcchhHHHHHHHHHHhccCCCCCEEE
Q psy4724 74 PKGHAMLITIGGSGAAEVTKLATFMNEYVLFEIEIL----KTYGLTDWRDDLCRLMKKSGGKDAKPMTF 138 (1650)
Q Consensus 74 p~G~alLvGvgGSGrqSLtrLAafi~~~~~fqIeit----k~Yg~~~f~eDLk~l~~~~g~~~~k~~vF 138 (1650)
|+-+.-|||++||||.|++.|--..-+=.-=+|.+- +.|+..-||. +-|.+...|+.|
T Consensus 493 pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~-------~Ig~V~QEPvLF 554 (716)
T KOG0058|consen 493 PGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRR-------KIGLVGQEPVLF 554 (716)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHH-------Heeeeeccceee
Confidence 555889999999999999888766544444455443 2344443332 335466667654
No 497
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=43.15 E-value=50 Score=37.36 Aligned_cols=76 Identities=17% Similarity=0.277 Sum_probs=48.6
Q ss_pred cCCCC-ceEEEecCCchhhhHHHHHHHhcCCceEEEEEcccCCcchhHHHHHHHHHHhccCCCCCEEEEEecCCcCch-h
Q psy4724 72 QQPKG-HAMLITIGGSGAAEVTKLATFMNEYVLFEIEILKTYGLTDWRDDLCRLMKKSGGKDAKPMTFLFSDTQIQNE-V 149 (1650)
Q Consensus 72 ~~p~G-~alLvGvgGSGrqSLtrLAafi~~~~~fqIeitk~Yg~~~f~eDLk~l~~~~g~~~~k~~vFl~tD~qI~~E-~ 149 (1650)
.-++| -.-++|+.||||.||-.+.+-+..-+-=++.+.. ..+..+.++-...+++ +.+-|+|-+-..... .
T Consensus 27 ~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g-~d~~~l~~~~~~~~R~------~~iGfvFQ~~nLl~~lt 99 (226)
T COG1136 27 EIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLING-KDLTKLSEKELAKLRR------KKIGFVFQNFNLLPDLT 99 (226)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECC-EEcCcCCHHHHHHHHH------HhEEEECccCCCCCCCC
Confidence 44566 6779999999999999999988766555554442 2233333433344443 447899998887643 3
Q ss_pred hHHHH
Q psy4724 150 FVEHI 154 (1650)
Q Consensus 150 fLedI 154 (1650)
-+|.|
T Consensus 100 v~ENv 104 (226)
T COG1136 100 VLENV 104 (226)
T ss_pred HHHHH
Confidence 34433
No 498
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=43.14 E-value=84 Score=39.19 Aligned_cols=24 Identities=33% Similarity=0.304 Sum_probs=19.8
Q ss_pred CCCceEEEecCCchhhhHHH-HHHH
Q psy4724 74 PKGHAMLITIGGSGAAEVTK-LATF 97 (1650)
Q Consensus 74 p~G~alLvGvgGSGrqSLtr-LAaf 97 (1650)
+++...|||+.|+||.|+.+ ||+.
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~ 214 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAAR 214 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 35689999999999999865 7764
No 499
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=43.07 E-value=16 Score=41.07 Aligned_cols=23 Identities=17% Similarity=0.315 Sum_probs=0.0
Q ss_pred CCCceEEEecCCchhhhHHHHHH
Q psy4724 74 PKGHAMLITIGGSGAAEVTKLAT 96 (1650)
Q Consensus 74 p~G~alLvGvgGSGrqSLtrLAa 96 (1650)
|+....|+|..||||.||.|+-+
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~ 46 (213)
T cd03235 24 PGEFLAIVGPNGAGKSTLLKAIL 46 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHc
No 500
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=42.97 E-value=17 Score=41.71 Aligned_cols=23 Identities=22% Similarity=0.320 Sum_probs=0.0
Q ss_pred CCCceEEEecCCchhhhHHHHHH
Q psy4724 74 PKGHAMLITIGGSGAAEVTKLAT 96 (1650)
Q Consensus 74 p~G~alLvGvgGSGrqSLtrLAa 96 (1650)
|+....|+|..||||.||.|+-+
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~ 49 (239)
T cd03296 27 SGELVALLGPSGSGKTTLLRLIA 49 (239)
T ss_pred CCCEEEEECCCCCCHHHHHHHHh
Done!