Query psy4724
Match_columns 1650
No_of_seqs 549 out of 2546
Neff 8.2
Searched_HMMs 29240
Date Sat Aug 17 00:15:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4724.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4724hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vkg_A Dynein heavy chain, cyt 100.0 8E-228 3E-232 2382.9 84.7 1229 20-1581 1594-3092(3245)
2 4akg_A Glutathione S-transfera 100.0 1E-167 5E-172 1772.5 68.0 860 21-1408 1558-2423(2695)
3 3vkg_A Dynein heavy chain, cyt 100.0 3.1E-55 1.1E-59 622.9 4.5 620 70-748 2179-2866(3245)
4 4akg_A Glutathione S-transfera 100.0 1.3E-53 4.3E-58 607.3 -4.3 555 75-742 2005-2599(2695)
5 2rr7_A Dynein heavy chain 9; m 99.5 4.7E-16 1.6E-20 162.2 -5.0 141 597-764 2-154 (155)
6 3err_A Fusion protein of micro 99.4 2.1E-13 7.3E-18 169.2 5.8 158 588-781 42-208 (536)
7 1d2n_A N-ethylmaleimide-sensit 95.8 0.016 5.3E-07 66.6 8.4 90 53-144 34-134 (272)
8 1jbk_A CLPB protein; beta barr 95.3 0.038 1.3E-06 58.9 8.7 106 53-161 23-150 (195)
9 2chg_A Replication factor C sm 95.1 0.069 2.4E-06 58.4 10.4 105 53-160 18-128 (226)
10 2p65_A Hypothetical protein PF 95.1 0.036 1.2E-06 58.9 7.8 106 53-161 23-151 (187)
11 2qz4_A Paraplegin; AAA+, SPG7, 94.5 0.096 3.3E-06 59.3 10.0 70 74-146 38-110 (262)
12 3h4m_A Proteasome-activating n 93.9 0.16 5.6E-06 58.3 10.2 71 73-145 49-121 (285)
13 1r6b_X CLPA protein; AAA+, N-t 93.0 0.15 5.2E-06 67.4 9.1 104 54-162 460-585 (758)
14 1lv7_A FTSH; alpha/beta domain 92.9 0.19 6.3E-06 56.9 8.3 67 73-142 44-112 (257)
15 2eqb_B RAB guanine nucleotide 92.8 1.3 4.4E-05 40.9 11.8 91 756-846 1-92 (97)
16 3vfd_A Spastin; ATPase, microt 92.2 0.3 1E-05 59.0 9.4 91 53-145 116-218 (389)
17 3b9p_A CG5977-PA, isoform A; A 92.1 0.5 1.7E-05 54.5 10.9 73 71-145 50-124 (297)
18 2x8a_A Nuclear valosin-contain 92.0 0.4 1.4E-05 54.8 9.6 101 22-142 8-111 (274)
19 3d8b_A Fidgetin-like protein 1 91.9 0.36 1.2E-05 57.5 9.5 89 53-143 85-185 (357)
20 1ic2_A Tropomyosin alpha chain 91.5 1.6 5.4E-05 39.6 11.0 70 753-822 6-75 (81)
21 3syl_A Protein CBBX; photosynt 91.4 0.48 1.6E-05 54.9 9.7 88 54-146 33-142 (309)
22 2v1u_A Cell division control p 91.4 0.44 1.5E-05 57.0 9.7 107 52-159 19-157 (387)
23 3pfi_A Holliday junction ATP-d 91.3 0.62 2.1E-05 54.9 10.7 101 53-161 30-133 (338)
24 3pxg_A Negative regulator of g 91.2 0.18 6.3E-06 62.4 6.1 84 53-142 181-274 (468)
25 3eie_A Vacuolar protein sortin 91.2 0.34 1.2E-05 56.8 8.2 71 72-144 48-120 (322)
26 1qvr_A CLPB protein; coiled co 91.1 0.45 1.5E-05 63.7 10.2 90 53-146 171-275 (854)
27 1xwi_A SKD1 protein; VPS4B, AA 91.0 0.89 3E-05 53.2 11.5 104 22-145 10-116 (322)
28 3uk6_A RUVB-like 2; hexameric 90.8 0.53 1.8E-05 56.1 9.6 49 53-101 45-96 (368)
29 3pxi_A Negative regulator of g 90.7 0.26 9E-06 65.1 7.2 103 54-162 493-607 (758)
30 1ixz_A ATP-dependent metallopr 90.7 0.61 2.1E-05 52.4 9.3 101 22-142 14-116 (254)
31 2dhr_A FTSH; AAA+ protein, hex 90.4 0.65 2.2E-05 57.5 10.0 120 21-160 28-160 (499)
32 2ce7_A Cell division protein F 90.3 0.85 2.9E-05 56.2 10.8 102 22-145 14-119 (476)
33 4b4t_I 26S protease regulatory 90.3 0.76 2.6E-05 55.2 9.9 102 22-145 180-286 (437)
34 4gkw_A Spindle assembly abnorm 90.2 4.1 0.00014 38.8 12.5 82 755-836 13-94 (167)
35 2qp9_X Vacuolar protein sortin 90.1 0.43 1.5E-05 56.7 7.8 90 53-145 52-154 (355)
36 3n70_A Transport activator; si 90.1 0.53 1.8E-05 47.9 7.5 91 58-158 7-100 (145)
37 4fcw_A Chaperone protein CLPB; 90.0 0.62 2.1E-05 54.0 9.0 106 55-162 20-147 (311)
38 3u61_B DNA polymerase accessor 89.9 1 3.5E-05 52.6 10.8 102 53-158 27-130 (324)
39 3u1c_A Tropomyosin alpha-1 cha 89.9 6.1 0.00021 37.4 13.8 77 751-827 7-83 (101)
40 1iy2_A ATP-dependent metallopr 89.8 0.69 2.3E-05 52.8 9.0 102 21-142 37-140 (278)
41 3ec2_A DNA replication protein 89.8 0.64 2.2E-05 49.1 8.1 93 60-159 22-127 (180)
42 3pvs_A Replication-associated 89.4 0.5 1.7E-05 58.0 7.7 105 54-161 28-133 (447)
43 2efr_A General control protein 88.9 10 0.00034 38.6 15.3 74 744-821 16-89 (155)
44 1njg_A DNA polymerase III subu 88.8 0.54 1.9E-05 51.8 7.0 101 53-158 24-150 (250)
45 1sxj_B Activator 1 37 kDa subu 88.7 0.65 2.2E-05 54.0 7.8 92 53-148 22-121 (323)
46 3cf0_A Transitional endoplasmi 88.6 0.59 2E-05 54.1 7.3 68 73-144 47-118 (301)
47 4b4t_M 26S protease regulatory 88.5 1.2 4E-05 54.0 10.0 102 22-144 179-284 (434)
48 4b4t_H 26S protease regulatory 88.4 0.84 2.9E-05 55.3 8.5 102 22-145 207-313 (467)
49 2chq_A Replication factor C sm 88.3 0.49 1.7E-05 55.0 6.4 92 54-148 19-116 (319)
50 1hqc_A RUVB; extended AAA-ATPa 88.3 1.1 3.7E-05 52.3 9.4 102 53-161 13-117 (324)
51 1fnn_A CDC6P, cell division co 88.2 1.7 5.8E-05 52.0 11.3 102 54-159 19-150 (389)
52 4b4t_K 26S protease regulatory 88.0 1.4 4.9E-05 53.2 10.2 101 22-143 170-274 (428)
53 1iqp_A RFCS; clamp loader, ext 88.0 0.72 2.4E-05 53.8 7.6 103 53-158 26-134 (327)
54 1sxj_A Activator 1 95 kDa subu 87.8 0.64 2.2E-05 58.3 7.3 89 74-162 76-179 (516)
55 4b4t_L 26S protease subunit RP 87.6 2 6.8E-05 52.1 11.2 102 22-145 179-285 (437)
56 2c9o_A RUVB-like 1; hexameric 87.5 0.94 3.2E-05 55.8 8.5 89 53-144 38-136 (456)
57 1ic2_A Tropomyosin alpha chain 87.3 6.9 0.00024 35.3 11.9 69 758-826 4-72 (81)
58 3u59_A Tropomyosin beta chain; 87.0 9.9 0.00034 35.9 13.3 76 751-826 7-82 (101)
59 1um8_A ATP-dependent CLP prote 86.9 1.5 5.2E-05 52.4 9.7 38 72-109 69-106 (376)
60 1l8q_A Chromosomal replication 86.9 1 3.5E-05 52.7 8.0 88 67-160 26-130 (324)
61 2qby_A CDC6 homolog 1, cell di 86.8 1 3.6E-05 53.6 8.3 56 53-108 21-84 (386)
62 4b4t_J 26S protease regulatory 86.7 1.5 5.1E-05 52.4 9.1 102 22-145 146-252 (405)
63 3u1c_A Tropomyosin alpha-1 cha 86.5 11 0.00039 35.4 13.4 62 761-822 10-71 (101)
64 1sxj_C Activator 1 40 kDa subu 86.4 1.4 4.9E-05 51.8 9.0 88 58-148 31-124 (340)
65 1c1g_A Tropomyosin; contractIl 86.1 10 0.00034 42.4 15.7 61 761-821 35-95 (284)
66 1c1g_A Tropomyosin; contractIl 86.1 8.7 0.0003 42.9 15.2 92 752-843 19-110 (284)
67 1ofh_A ATP-dependent HSL prote 85.9 0.93 3.2E-05 52.4 6.9 54 57-110 20-85 (310)
68 3cf2_A TER ATPase, transitiona 85.7 1.4 4.8E-05 57.5 8.9 69 73-145 236-308 (806)
69 3bas_A Myosin heavy chain, str 85.5 6.5 0.00022 36.2 10.8 63 754-817 2-64 (89)
70 3bos_A Putative DNA replicatio 85.5 0.54 1.8E-05 52.0 4.4 76 59-146 38-116 (242)
71 2fxo_A Myosin heavy chain, car 85.4 16 0.00056 36.1 14.5 78 772-849 46-123 (129)
72 3co5_A Putative two-component 85.3 1.2 4.2E-05 45.0 6.6 97 53-161 5-102 (143)
73 2fxo_A Myosin heavy chain, car 85.3 11 0.00038 37.3 13.3 93 755-848 2-94 (129)
74 3hu3_A Transitional endoplasmi 85.3 1.6 5.6E-05 54.0 8.9 87 53-142 205-305 (489)
75 1r6b_X CLPA protein; AAA+, N-t 85.0 1 3.6E-05 59.3 7.5 89 53-146 187-290 (758)
76 2z4s_A Chromosomal replication 84.9 1.3 4.4E-05 54.3 7.7 91 65-161 118-227 (440)
77 2v4h_A NF-kappa-B essential mo 84.8 12 0.00042 35.1 12.1 82 761-848 25-108 (110)
78 2bjv_A PSP operon transcriptio 84.7 2.9 9.8E-05 47.1 10.1 100 57-162 11-128 (265)
79 3u59_A Tropomyosin beta chain; 84.4 16 0.00055 34.4 13.4 62 761-822 24-85 (101)
80 2jee_A YIIU; FTSZ, septum, coi 84.3 9.9 0.00034 33.9 10.7 47 762-808 8-54 (81)
81 2jee_A YIIU; FTSZ, septum, coi 84.3 6.1 0.00021 35.3 9.4 67 775-841 7-73 (81)
82 3hws_A ATP-dependent CLP prote 83.8 0.92 3.1E-05 54.1 5.6 37 73-109 49-85 (363)
83 1sxj_D Activator 1 41 kDa subu 83.7 2.4 8.3E-05 49.8 9.3 103 53-158 38-157 (353)
84 3pxi_A Negative regulator of g 83.6 0.91 3.1E-05 59.9 6.0 84 53-142 181-274 (758)
85 2zan_A Vacuolar protein sortin 83.5 1.1 3.8E-05 54.9 6.3 88 53-144 135-237 (444)
86 1jr3_A DNA polymerase III subu 83.2 3 0.0001 49.5 9.9 95 53-151 17-136 (373)
87 3t15_A Ribulose bisphosphate c 83.0 1.4 4.8E-05 50.7 6.5 67 77-145 38-110 (293)
88 3mq7_A Bone marrow stromal ant 82.4 10 0.00035 35.7 10.5 86 740-831 15-100 (121)
89 1a5t_A Delta prime, HOLB; zinc 82.1 3 0.0001 48.9 9.1 92 64-162 11-133 (334)
90 3vaa_A Shikimate kinase, SK; s 81.4 1.2 4E-05 48.0 4.8 33 73-105 22-55 (199)
91 3hnw_A Uncharacterized protein 81.0 11 0.00039 37.6 11.3 24 742-765 64-87 (138)
92 3hnw_A Uncharacterized protein 80.8 14 0.00047 37.0 11.8 54 767-820 75-128 (138)
93 2r44_A Uncharacterized protein 78.9 3.7 0.00013 47.9 8.4 52 54-109 29-80 (331)
94 2dfs_A Myosin-5A; myosin-V, in 78.6 9.6 0.00033 51.6 13.2 77 767-846 970-1046(1080)
95 3jsv_C NF-kappa-B essential mo 78.3 28 0.00097 31.8 11.7 86 762-853 4-91 (94)
96 1ypw_A Transitional endoplasmi 78.2 2.3 7.8E-05 56.3 6.9 69 73-143 236-306 (806)
97 2gno_A DNA polymerase III, gam 77.0 4.8 0.00016 46.5 8.4 92 66-162 8-107 (305)
98 3ni0_A Bone marrow stromal ant 76.5 31 0.0011 31.3 11.2 80 740-822 8-87 (99)
99 1qvr_A CLPB protein; coiled co 76.5 2.3 7.7E-05 56.9 6.2 103 54-162 560-688 (854)
100 2kjq_A DNAA-related protein; s 75.4 3.5 0.00012 42.1 6.0 73 74-161 35-114 (149)
101 1g41_A Heat shock protein HSLU 75.0 3.5 0.00012 50.0 6.7 37 73-109 48-84 (444)
102 1w5s_A Origin recognition comp 74.8 4 0.00014 49.0 7.4 25 74-98 49-75 (412)
103 1kxf_A Sindbis virus capsid pr 74.7 0.62 2.1E-05 49.2 0.0 16 1561-1576 41-56 (264)
104 3o0z_A RHO-associated protein 74.5 75 0.0026 32.5 15.0 46 805-850 93-138 (168)
105 3cf2_A TER ATPase, transitiona 74.4 3.1 0.0001 54.4 6.4 68 73-144 509-580 (806)
106 1in4_A RUVB, holliday junction 73.5 14 0.00046 43.2 11.3 32 74-105 50-81 (334)
107 2ocy_A RAB guanine nucleotide 73.3 67 0.0023 32.5 14.3 78 769-846 46-124 (154)
108 1sxj_E Activator 1 40 kDa subu 73.3 5.8 0.0002 46.6 8.1 22 76-97 37-58 (354)
109 1tue_A Replication protein E1; 73.0 4.2 0.00014 43.8 5.9 58 27-100 25-84 (212)
110 2fna_A Conserved hypothetical 72.9 12 0.00041 43.6 10.8 43 64-109 22-64 (357)
111 3na7_A HP0958; flagellar bioge 72.9 40 0.0014 37.5 14.4 8 934-941 206-213 (256)
112 2qen_A Walker-type ATPase; unk 72.8 5.5 0.00019 46.5 7.7 35 65-100 22-56 (350)
113 3mq7_A Bone marrow stromal ant 71.7 43 0.0015 31.7 11.4 35 765-799 30-64 (121)
114 2ze6_A Isopentenyl transferase 71.6 4.1 0.00014 45.7 5.9 28 78-106 4-32 (253)
115 3crm_A TRNA delta(2)-isopenten 71.5 4.7 0.00016 46.8 6.4 67 77-145 7-105 (323)
116 3oja_B Anopheles plasmodium-re 71.4 24 0.00083 44.7 13.9 69 780-848 515-583 (597)
117 2w58_A DNAI, primosome compone 70.5 5.5 0.00019 42.5 6.5 23 76-98 55-77 (202)
118 3ol1_A Vimentin; structural ge 70.5 69 0.0024 31.0 13.5 69 761-829 21-89 (119)
119 3te6_A Regulatory protein SIR3 70.4 7.2 0.00025 45.2 7.6 32 68-99 37-69 (318)
120 2no2_A HIP-I, huntingtin-inter 69.6 78 0.0027 30.1 13.4 47 805-851 57-103 (107)
121 2qby_B CDC6 homolog 3, cell di 69.4 5.4 0.00018 47.4 6.6 58 53-110 21-91 (384)
122 2r62_A Cell division protease 69.2 1.6 5.4E-05 49.4 1.7 33 73-106 43-75 (268)
123 1ypw_A Transitional endoplasmi 69.1 1 3.5E-05 59.6 0.1 67 73-141 509-577 (806)
124 3jvv_A Twitching mobility prot 69.0 3.6 0.00012 48.6 4.8 46 67-112 115-164 (356)
125 3a7p_A Autophagy protein 16; c 68.4 57 0.0019 32.7 12.2 55 756-810 71-125 (152)
126 3htk_A Structural maintenance 68.3 29 0.00099 29.1 9.1 55 756-810 1-55 (60)
127 3a7p_A Autophagy protein 16; c 68.1 40 0.0014 33.8 11.1 67 775-841 69-139 (152)
128 1x79_B RAB GTPase binding effe 67.8 38 0.0013 32.2 10.4 100 754-856 7-110 (112)
129 3tnu_B Keratin, type II cytosk 67.8 21 0.0007 35.3 9.3 73 761-833 16-92 (129)
130 2eyu_A Twitching motility prot 67.4 2.3 8E-05 47.9 2.6 32 59-96 15-46 (261)
131 3m6a_A ATP-dependent protease 66.9 7 0.00024 49.1 7.2 37 73-109 106-142 (543)
132 1deq_A Fibrinogen (alpha chain 66.5 26 0.00089 40.3 10.7 138 708-863 64-205 (390)
133 3ghg_A Fibrinogen alpha chain; 65.9 14 0.00047 44.2 8.6 92 708-813 61-156 (562)
134 2b9c_A Striated-muscle alpha t 65.6 98 0.0034 31.2 13.8 13 809-821 87-99 (147)
135 3tnu_A Keratin, type I cytoske 65.0 19 0.00065 35.7 8.4 73 761-833 18-94 (131)
136 1i84_S Smooth muscle myosin he 64.1 20 0.0007 49.3 11.5 21 75-95 169-189 (1184)
137 1vt4_I APAF-1 related killer D 63.5 12 0.00041 50.0 8.3 63 65-127 138-208 (1221)
138 2v71_A Nuclear distribution pr 63.2 83 0.0028 33.0 13.0 27 825-851 97-123 (189)
139 3nbx_X ATPase RAVA; AAA+ ATPas 63.0 5.3 0.00018 49.4 4.8 59 31-100 8-66 (500)
140 1i84_S Smooth muscle myosin he 62.2 17 0.00059 50.1 10.2 40 761-800 858-897 (1184)
141 1p9r_A General secretion pathw 61.4 5 0.00017 48.4 4.2 46 67-112 159-207 (418)
142 1ojl_A Transcriptional regulat 60.8 6.9 0.00024 45.1 5.1 45 55-99 5-49 (304)
143 3q8t_A Beclin-1; autophagy, AT 60.4 1E+02 0.0034 28.7 11.8 71 758-828 23-93 (96)
144 1knq_A Gluconate kinase; ALFA/ 60.3 5 0.00017 41.8 3.4 28 75-102 8-35 (175)
145 3o0z_A RHO-associated protein 60.3 1.3E+02 0.0046 30.7 13.5 37 782-818 42-78 (168)
146 3foz_A TRNA delta(2)-isopenten 60.0 9.4 0.00032 43.8 5.8 72 78-159 13-117 (316)
147 3trf_A Shikimate kinase, SK; a 59.2 5.8 0.0002 41.7 3.7 30 75-104 5-34 (185)
148 3bas_A Myosin heavy chain, str 59.2 1.1E+02 0.0036 28.0 11.7 29 790-818 58-86 (89)
149 2a5y_B CED-4; apoptosis; HET: 59.1 17 0.00057 45.7 8.6 54 75-129 152-212 (549)
150 1kag_A SKI, shikimate kinase I 58.3 5.9 0.0002 41.0 3.6 25 77-101 6-30 (173)
151 1jcd_A Major outer membrane li 58.3 49 0.0017 27.0 7.9 45 775-819 5-49 (52)
152 1s96_A Guanylate kinase, GMP k 58.2 4.9 0.00017 44.0 3.0 29 72-100 12-41 (219)
153 2efr_A General control protein 57.8 1.6E+02 0.0056 29.8 15.2 60 789-848 71-130 (155)
154 3nmd_A CGMP dependent protein 57.7 33 0.0011 29.9 7.2 34 778-811 30-63 (72)
155 2v4h_A NF-kappa-B essential mo 57.3 1.3E+02 0.0044 28.4 12.8 42 782-823 63-104 (110)
156 3iij_A Coilin-interacting nucl 57.2 7.5 0.00026 40.6 4.2 29 75-103 11-39 (180)
157 3nmd_A CGMP dependent protein 57.1 32 0.0011 29.9 7.1 43 763-805 22-64 (72)
158 3c8u_A Fructokinase; YP_612366 56.7 6.4 0.00022 42.4 3.6 25 74-98 21-45 (208)
159 1y63_A LMAJ004144AAA protein; 56.5 6.7 0.00023 41.3 3.7 32 73-104 7-40 (184)
160 1zp6_A Hypothetical protein AT 56.5 5.2 0.00018 42.3 2.8 23 76-98 10-32 (191)
161 3iv1_A Tumor susceptibility ge 55.9 72 0.0025 28.3 9.2 50 769-818 20-69 (78)
162 1svm_A Large T antigen; AAA+ f 55.4 9.9 0.00034 45.2 5.2 32 72-103 165-197 (377)
163 1lvg_A Guanylate kinase, GMP k 55.1 5.7 0.00019 42.6 2.8 24 74-97 3-26 (198)
164 3uie_A Adenylyl-sulfate kinase 55.0 6.5 0.00022 42.0 3.3 26 73-98 23-48 (200)
165 1f6b_A SAR1; gtpases, N-termin 54.9 5.7 0.00019 42.4 2.8 22 72-93 22-43 (198)
166 2ewv_A Twitching motility prot 54.8 6.3 0.00022 46.9 3.4 36 72-107 133-172 (372)
167 4h22_A Leucine-rich repeat fli 54.3 1.2E+02 0.004 28.4 10.7 40 779-818 35-74 (103)
168 4gp7_A Metallophosphoesterase; 54.1 6.5 0.00022 40.9 3.0 22 73-94 6-28 (171)
169 2og2_A Putative signal recogni 54.1 17 0.00059 42.7 7.0 23 76-98 158-180 (359)
170 2e7s_A RAB guanine nucleotide 53.9 51 0.0017 32.5 8.9 86 761-846 26-112 (135)
171 2b9c_A Striated-muscle alpha t 53.9 1.9E+02 0.0064 29.1 14.1 87 761-847 53-139 (147)
172 1z6t_A APAF-1, apoptotic prote 53.7 25 0.00086 44.4 9.1 58 50-110 122-189 (591)
173 4eun_A Thermoresistant glucoki 53.6 8.3 0.00028 41.2 3.9 29 74-102 28-56 (200)
174 4h22_A Leucine-rich repeat fli 53.0 65 0.0022 30.0 8.8 26 757-782 34-59 (103)
175 1u0j_A DNA replication protein 52.9 10 0.00035 42.6 4.4 55 28-97 71-127 (267)
176 3cve_A Homer protein homolog 1 52.8 68 0.0023 28.0 8.5 44 772-815 5-48 (72)
177 3b9q_A Chloroplast SRP recepto 52.7 18 0.00063 41.5 6.8 23 76-98 101-123 (302)
178 1wt6_A Myotonin-protein kinase 52.7 1.2E+02 0.0042 26.9 10.0 57 764-820 14-70 (81)
179 3cvf_A Homer-3, homer protein 52.7 33 0.0011 30.6 6.6 48 769-816 8-55 (79)
180 1qhx_A CPT, protein (chloramph 52.4 11 0.00037 39.1 4.5 28 77-104 5-32 (178)
181 3oja_B Anopheles plasmodium-re 52.4 61 0.0021 40.9 12.4 62 757-818 513-574 (597)
182 2efk_A CDC42-interacting prote 52.0 2.9E+02 0.01 30.9 19.7 59 754-812 96-154 (301)
183 2j41_A Guanylate kinase; GMP, 51.9 7.2 0.00025 41.7 3.0 23 76-98 7-29 (207)
184 3qh9_A Liprin-beta-2; coiled-c 51.5 1E+02 0.0036 27.3 9.4 54 751-811 24-77 (81)
185 1kgd_A CASK, peripheral plasma 51.0 7.8 0.00027 40.7 3.0 24 75-98 5-28 (180)
186 1zuh_A Shikimate kinase; alpha 50.9 8.2 0.00028 39.8 3.2 29 76-104 8-36 (168)
187 3a8t_A Adenylate isopentenyltr 50.7 15 0.00052 42.7 5.6 66 77-145 42-141 (339)
188 3exa_A TRNA delta(2)-isopenten 50.7 16 0.00054 42.0 5.6 73 78-159 6-110 (322)
189 2ga8_A Hypothetical 39.9 kDa p 50.5 15 0.00051 43.0 5.5 46 57-102 4-51 (359)
190 3kb2_A SPBC2 prophage-derived 50.2 9.8 0.00033 39.1 3.7 28 77-104 3-30 (173)
191 2v9p_A Replication protein E1; 50.0 8.6 0.00029 44.2 3.4 28 71-98 121-149 (305)
192 3b85_A Phosphate starvation-in 49.8 7.3 0.00025 42.2 2.6 25 74-98 21-45 (208)
193 2eqb_B RAB guanine nucleotide 49.8 94 0.0032 28.8 9.4 29 772-800 10-38 (97)
194 1via_A Shikimate kinase; struc 49.6 10 0.00035 39.4 3.7 26 77-102 6-31 (175)
195 2dfs_A Myosin-5A; myosin-V, in 49.5 81 0.0028 42.7 13.2 21 75-95 156-176 (1080)
196 1cii_A Colicin IA; bacteriocin 49.3 1.5E+02 0.0052 34.7 13.0 56 761-816 357-412 (602)
197 1g8p_A Magnesium-chelatase 38 49.0 7.7 0.00026 45.4 2.9 29 72-100 42-70 (350)
198 3cm0_A Adenylate kinase; ATP-b 49.0 9 0.00031 40.1 3.2 25 77-101 6-30 (186)
199 3tr0_A Guanylate kinase, GMP k 48.3 8.8 0.0003 40.9 3.0 27 72-98 3-30 (205)
200 3lw7_A Adenylate kinase relate 48.1 11 0.00037 38.8 3.6 25 78-103 4-28 (179)
201 3eph_A TRNA isopentenyltransfe 48.1 21 0.00073 42.4 6.4 66 77-145 4-102 (409)
202 2yvu_A Probable adenylyl-sulfa 48.1 7.8 0.00027 40.8 2.5 25 72-96 9-34 (186)
203 1ye8_A Protein THEP1, hypothet 48.0 8 0.00027 40.7 2.5 24 77-100 2-25 (178)
204 3ol1_A Vimentin; structural ge 47.7 1.9E+02 0.0067 27.8 12.1 63 754-816 21-97 (119)
205 2rhm_A Putative kinase; P-loop 47.5 11 0.00039 39.5 3.7 28 77-104 7-34 (193)
206 2efl_A Formin-binding protein 47.3 1.7E+02 0.0057 33.0 14.0 39 770-808 119-157 (305)
207 3t61_A Gluconokinase; PSI-biol 47.2 10 0.00035 40.4 3.3 28 77-104 20-47 (202)
208 1zj6_A ADP-ribosylation factor 47.0 11 0.00038 39.4 3.5 30 64-93 5-34 (187)
209 2cvh_A DNA repair and recombin 46.7 20 0.00068 38.4 5.6 31 67-97 9-42 (220)
210 2gza_A Type IV secretion syste 46.7 12 0.0004 44.3 4.0 35 73-107 173-209 (361)
211 1g8f_A Sulfate adenylyltransfe 46.5 10 0.00036 46.8 3.6 39 62-100 378-420 (511)
212 1m2o_B GTP-binding protein SAR 46.4 8 0.00027 40.8 2.2 23 72-94 20-42 (190)
213 1htw_A HI0065; nucleotide-bind 46.3 11 0.00036 38.9 3.0 26 74-99 31-57 (158)
214 1ly1_A Polynucleotide kinase; 46.2 10 0.00036 39.3 3.1 21 77-97 4-24 (181)
215 1rj9_A FTSY, signal recognitio 46.1 10 0.00035 43.6 3.2 24 75-98 102-125 (304)
216 2ocy_A RAB guanine nucleotide 45.9 2.1E+02 0.0071 28.9 12.1 68 763-830 61-136 (154)
217 1x8y_A Lamin A/C; structural p 45.6 1.7E+02 0.0059 26.4 11.4 57 756-812 13-73 (86)
218 2orw_A Thymidine kinase; TMTK, 45.4 18 0.00061 38.1 4.8 83 77-162 5-104 (184)
219 1m7g_A Adenylylsulfate kinase; 45.4 8.9 0.0003 41.3 2.5 34 63-96 11-46 (211)
220 3k29_A Putative uncharacterize 45.4 2.6E+02 0.0089 28.4 16.1 76 786-861 83-158 (169)
221 1e6c_A Shikimate kinase; phosp 45.1 12 0.00042 38.5 3.4 28 77-104 4-31 (173)
222 2v71_A Nuclear distribution pr 45.0 2.9E+02 0.01 28.9 15.7 18 781-798 63-80 (189)
223 1gk4_A Vimentin; intermediate 44.6 1.8E+02 0.0061 26.2 11.6 54 758-811 13-70 (84)
224 2bdt_A BH3686; alpha-beta prot 44.5 13 0.00045 39.1 3.6 21 77-97 4-24 (189)
225 1z6g_A Guanylate kinase; struc 44.2 12 0.00039 40.8 3.1 27 72-98 19-46 (218)
226 2pcj_A ABC transporter, lipopr 44.2 9.5 0.00033 41.7 2.5 37 73-109 27-64 (224)
227 2pt7_A CAG-ALFA; ATPase, prote 44.1 12 0.00042 43.5 3.5 27 73-99 169-195 (330)
228 3dzd_A Transcriptional regulat 44.0 43 0.0015 39.5 8.3 73 28-100 104-177 (368)
229 3tif_A Uncharacterized ABC tra 43.8 9.4 0.00032 42.1 2.3 38 72-109 27-65 (235)
230 2cdn_A Adenylate kinase; phosp 43.6 15 0.00053 39.0 4.0 31 74-104 18-49 (201)
231 3a4m_A L-seryl-tRNA(SEC) kinas 43.5 13 0.00045 41.6 3.6 28 77-104 6-36 (260)
232 2pez_A Bifunctional 3'-phospho 43.4 15 0.00052 38.2 3.8 31 75-105 5-38 (179)
233 1sgw_A Putative ABC transporte 43.3 10 0.00036 41.1 2.6 34 75-108 35-68 (214)
234 3asz_A Uridine kinase; cytidin 43.3 11 0.00037 40.5 2.8 23 76-98 7-29 (211)
235 1m8p_A Sulfate adenylyltransfe 43.3 15 0.00051 46.3 4.3 34 63-96 380-417 (573)
236 3nwj_A ATSK2; P loop, shikimat 43.2 14 0.00049 41.0 3.8 30 75-104 48-77 (250)
237 2pt5_A Shikimate kinase, SK; a 42.8 14 0.00048 37.9 3.4 28 77-104 2-29 (168)
238 3e2i_A Thymidine kinase; Zn-bi 42.8 19 0.00065 38.9 4.4 84 79-165 32-132 (219)
239 3c9i_A Tail needle protein GP2 42.6 3.1E+02 0.011 28.5 13.3 75 772-846 68-142 (242)
240 3iv1_A Tumor susceptibility ge 42.4 1.6E+02 0.0056 26.1 9.3 28 820-847 43-70 (78)
241 2z0h_A DTMP kinase, thymidylat 42.3 26 0.0009 36.7 5.6 27 78-104 3-32 (197)
242 2qor_A Guanylate kinase; phosp 42.3 13 0.00044 39.8 3.1 25 73-97 9-34 (204)
243 1rz3_A Hypothetical protein rb 41.9 22 0.00076 37.9 4.9 23 74-96 20-43 (201)
244 2px0_A Flagellar biosynthesis 41.5 14 0.00047 42.4 3.4 26 74-99 104-130 (296)
245 2vli_A Antibiotic resistance p 41.4 13 0.00045 38.7 3.0 28 77-104 7-34 (183)
246 2k48_A Nucleoprotein; viral pr 41.3 2.2E+02 0.0076 26.4 11.0 60 759-818 34-98 (107)
247 3mov_A Lamin-B1; LMNB1, B-type 41.2 2.2E+02 0.0075 26.3 10.9 46 756-804 22-67 (95)
248 1cii_A Colicin IA; bacteriocin 41.1 4.9E+02 0.017 30.6 15.5 85 747-831 350-440 (602)
249 3cve_A Homer protein homolog 1 41.1 1.8E+02 0.0062 25.4 9.7 59 753-811 7-65 (72)
250 2cbz_A Multidrug resistance-as 41.0 11 0.00038 41.6 2.3 26 73-98 28-54 (237)
251 3htk_A Structural maintenance 41.0 1.4E+02 0.0049 24.8 8.8 47 770-816 8-54 (60)
252 1kht_A Adenylate kinase; phosp 41.0 14 0.00049 38.6 3.2 21 77-97 5-25 (192)
253 2ff7_A Alpha-hemolysin translo 41.0 11 0.00038 41.9 2.3 37 73-109 32-69 (247)
254 2iyv_A Shikimate kinase, SK; t 40.9 17 0.00057 38.0 3.7 27 77-103 4-30 (184)
255 3tau_A Guanylate kinase, GMP k 40.8 14 0.00047 39.8 3.1 24 74-97 6-30 (208)
256 1moz_A ARL1, ADP-ribosylation 40.7 14 0.00047 38.3 3.0 21 73-93 16-36 (183)
257 2i3b_A HCR-ntpase, human cance 40.7 14 0.00047 39.3 3.0 23 77-99 3-25 (189)
258 3mq9_A Bone marrow stromal ant 40.5 1.7E+02 0.006 35.4 13.5 62 762-823 399-464 (471)
259 2p5t_B PEZT; postsegregational 40.5 32 0.0011 38.2 6.1 22 77-98 34-55 (253)
260 2d2e_A SUFC protein; ABC-ATPas 40.3 13 0.00045 41.4 2.9 27 72-98 25-52 (250)
261 3cr8_A Sulfate adenylyltranfer 40.2 17 0.00058 45.4 4.1 36 62-97 352-391 (552)
262 1gd2_E Transcription factor PA 40.2 1.6E+02 0.0056 25.5 9.0 43 777-819 25-67 (70)
263 3swy_A Cyclic nucleotide-gated 39.7 80 0.0027 25.0 6.2 12 805-816 22-33 (46)
264 3a00_A Guanylate kinase, GMP k 39.5 13 0.00046 39.0 2.6 21 78-98 4-24 (186)
265 2nq2_C Hypothetical ABC transp 39.3 12 0.00042 41.7 2.4 28 72-99 27-55 (253)
266 2lw1_A ABC transporter ATP-bin 39.0 1.3E+02 0.0043 27.5 8.8 19 779-797 27-45 (89)
267 3kta_A Chromosome segregation 38.9 17 0.00058 37.9 3.4 30 71-100 22-51 (182)
268 1nks_A Adenylate kinase; therm 38.9 14 0.00048 38.7 2.7 21 78-98 4-25 (194)
269 4ehx_A Tetraacyldisaccharide 4 38.8 22 0.00076 41.0 4.5 37 77-115 37-77 (315)
270 2bbw_A Adenylate kinase 4, AK4 38.8 13 0.00046 41.0 2.6 21 76-96 28-48 (246)
271 2onk_A Molybdate/tungstate ABC 38.6 14 0.00048 40.8 2.7 33 76-108 25-57 (240)
272 2jaq_A Deoxyguanosine kinase; 38.5 16 0.00056 38.6 3.2 25 77-101 2-26 (205)
273 2zu0_C Probable ATP-dependent 38.4 15 0.0005 41.5 2.9 27 72-98 42-69 (267)
274 3swk_A Vimentin; cytoskeleton, 38.3 2.3E+02 0.0078 25.7 10.4 59 765-823 5-63 (86)
275 3swk_A Vimentin; cytoskeleton, 38.2 1.6E+02 0.0055 26.7 9.2 51 768-818 29-79 (86)
276 1ji0_A ABC transporter; ATP bi 38.2 13 0.00044 41.1 2.3 38 72-109 28-66 (240)
277 1mv5_A LMRA, multidrug resista 38.2 12 0.00041 41.5 2.1 28 72-99 24-52 (243)
278 1g6h_A High-affinity branched- 38.1 13 0.00044 41.6 2.3 38 72-109 29-67 (257)
279 4g1u_C Hemin import ATP-bindin 38.1 13 0.00044 41.9 2.3 37 72-108 33-70 (266)
280 4ag6_A VIRB4 ATPase, type IV s 38.0 24 0.00083 42.0 4.9 38 74-111 34-74 (392)
281 1cke_A CK, MSSA, protein (cyti 38.0 18 0.00063 39.1 3.6 25 77-101 7-31 (227)
282 2c95_A Adenylate kinase 1; tra 37.9 20 0.00069 37.6 3.8 26 77-102 11-36 (196)
283 1qf9_A UMP/CMP kinase, protein 37.9 20 0.00068 37.5 3.7 25 77-101 8-32 (194)
284 3r20_A Cytidylate kinase; stru 37.9 18 0.00062 39.7 3.5 26 77-102 11-36 (233)
285 2if2_A Dephospho-COA kinase; a 37.9 18 0.00063 38.4 3.5 24 77-101 3-26 (204)
286 3dl0_A Adenylate kinase; phosp 37.9 19 0.00066 38.7 3.7 27 77-103 2-28 (216)
287 1znw_A Guanylate kinase, GMP k 37.9 16 0.00053 39.3 2.9 28 72-99 16-44 (207)
288 2pze_A Cystic fibrosis transme 37.8 13 0.00045 40.7 2.4 37 72-108 30-67 (229)
289 1b0u_A Histidine permease; ABC 37.7 13 0.00045 41.7 2.4 37 72-108 28-65 (262)
290 1aky_A Adenylate kinase; ATP:A 37.7 21 0.0007 38.6 3.9 27 76-102 5-31 (220)
291 2ghi_A Transport protein; mult 37.6 13 0.00045 41.6 2.3 27 72-98 42-69 (260)
292 3tlx_A Adenylate kinase 2; str 37.6 34 0.0012 37.7 5.7 20 77-96 31-50 (243)
293 2qi9_C Vitamin B12 import ATP- 37.4 19 0.00065 40.0 3.6 37 72-109 22-59 (249)
294 2pbr_A DTMP kinase, thymidylat 37.4 36 0.0012 35.5 5.7 29 78-106 3-34 (195)
295 2ehv_A Hypothetical protein PH 37.2 16 0.00053 40.3 2.9 24 73-96 27-51 (251)
296 3jsv_C NF-kappa-B essential mo 37.2 2.4E+02 0.0081 25.9 9.8 51 781-831 40-90 (94)
297 1odf_A YGR205W, hypothetical 3 37.2 23 0.00077 40.4 4.2 22 77-98 33-55 (290)
298 2ihy_A ABC transporter, ATP-bi 37.1 14 0.00046 42.0 2.4 37 73-109 44-81 (279)
299 2yz2_A Putative ABC transporte 37.1 14 0.00047 41.7 2.3 39 71-109 28-67 (266)
300 1zcb_A G alpha I/13; GTP-bindi 37.1 13 0.00043 44.0 2.1 24 77-100 35-58 (362)
301 1tq4_A IIGP1, interferon-induc 37.0 22 0.00077 42.6 4.3 28 70-97 64-91 (413)
302 2yhs_A FTSY, cell division pro 36.9 15 0.00052 45.0 2.8 25 74-98 291-316 (503)
303 2bwj_A Adenylate kinase 5; pho 36.9 19 0.00067 37.9 3.5 26 77-102 14-39 (199)
304 3gfo_A Cobalt import ATP-bindi 36.5 14 0.00049 41.7 2.4 38 72-109 30-68 (275)
305 3sfz_A APAF-1, apoptotic pepti 36.3 49 0.0017 45.8 8.4 55 54-111 126-190 (1249)
306 1g8p_A Magnesium-chelatase 38 36.3 1.6E+02 0.0056 33.7 11.8 88 974-1064 144-233 (350)
307 3k1j_A LON protease, ATP-depen 36.2 22 0.00076 45.1 4.4 41 58-102 47-87 (604)
308 2xv5_A Lamin-A/C; structural p 36.1 1.6E+02 0.0056 25.9 8.5 47 767-813 5-51 (74)
309 2gks_A Bifunctional SAT/APS ki 36.1 21 0.00073 44.6 4.1 35 62-96 355-393 (546)
310 1vpl_A ABC transporter, ATP-bi 36.1 15 0.0005 41.2 2.4 39 71-109 36-75 (256)
311 2ixe_A Antigen peptide transpo 36.0 14 0.0005 41.6 2.3 38 71-108 40-78 (271)
312 1tev_A UMP-CMP kinase; ploop, 35.9 20 0.0007 37.5 3.4 22 77-98 5-27 (196)
313 2olj_A Amino acid ABC transpor 35.7 15 0.00051 41.3 2.4 37 72-108 46-83 (263)
314 1ex7_A Guanylate kinase; subst 35.7 14 0.00049 39.0 2.1 17 78-94 4-20 (186)
315 3be4_A Adenylate kinase; malar 35.7 21 0.00073 38.5 3.6 28 77-104 7-34 (217)
316 1uf9_A TT1252 protein; P-loop, 35.5 22 0.00075 37.6 3.6 27 77-104 10-36 (203)
317 1jcd_A Major outer membrane li 35.5 1.7E+02 0.0059 23.8 7.8 46 781-826 4-49 (52)
318 1zd8_A GTP:AMP phosphotransfer 35.4 24 0.00082 38.3 4.0 26 77-102 9-34 (227)
319 2xdj_A Uncharacterized protein 35.3 2.5E+02 0.0085 25.3 10.3 49 761-809 7-55 (83)
320 3ghg_A Fibrinogen alpha chain; 35.2 1.6E+02 0.0054 35.5 10.7 26 753-778 64-89 (562)
321 1e4v_A Adenylate kinase; trans 35.0 22 0.00077 38.2 3.6 27 77-103 2-28 (214)
322 2ged_A SR-beta, signal recogni 34.9 19 0.00065 37.7 2.9 21 74-94 47-67 (193)
323 3nh6_A ATP-binding cassette SU 34.9 13 0.00046 42.6 1.9 38 72-109 76-114 (306)
324 3fb4_A Adenylate kinase; psych 34.8 22 0.00075 38.2 3.5 26 78-103 3-28 (216)
325 1jjv_A Dephospho-COA kinase; P 34.7 20 0.00069 38.2 3.1 20 78-97 5-24 (206)
326 1zak_A Adenylate kinase; ATP:A 34.7 18 0.00063 39.1 2.9 24 77-100 7-30 (222)
327 2oap_1 GSPE-2, type II secreti 34.6 36 0.0012 42.1 5.7 34 74-107 259-294 (511)
328 4e22_A Cytidylate kinase; P-lo 34.1 26 0.0009 38.8 4.1 30 73-102 25-54 (252)
329 2qt1_A Nicotinamide riboside k 34.0 19 0.00066 38.4 2.9 24 74-97 19-43 (207)
330 3efg_A Protein SLYX homolog; x 34.0 1E+02 0.0036 27.4 7.0 47 774-820 14-60 (78)
331 3fpp_A Macrolide-specific effl 33.9 1.4E+02 0.0048 34.4 10.6 36 759-794 68-103 (341)
332 4a74_A DNA repair and recombin 33.5 19 0.00063 39.0 2.7 32 66-97 13-47 (231)
333 4dk0_A Putative MACA; alpha-ha 33.4 1E+02 0.0036 35.9 9.5 30 760-789 70-99 (369)
334 3dm5_A SRP54, signal recogniti 33.3 36 0.0012 41.1 5.3 53 75-129 100-155 (443)
335 2qgz_A Helicase loader, putati 33.3 33 0.0011 39.4 4.8 23 75-97 152-174 (308)
336 3f9v_A Minichromosome maintena 33.2 17 0.00058 46.1 2.5 26 77-102 329-354 (595)
337 2bbs_A Cystic fibrosis transme 33.1 18 0.00061 41.3 2.5 27 72-98 60-87 (290)
338 3upu_A ATP-dependent DNA helic 33.0 25 0.00084 43.0 3.9 38 59-99 32-70 (459)
339 3kl4_A SRP54, signal recogniti 32.9 30 0.001 41.7 4.5 53 75-129 97-152 (433)
340 3j0f_I E2 envelope glycoprotei 32.9 20 0.00069 41.4 2.8 42 1014-1055 284-327 (423)
341 1ukz_A Uridylate kinase; trans 32.9 27 0.00093 37.0 3.8 24 77-101 17-41 (203)
342 2wwf_A Thymidilate kinase, put 32.8 28 0.00095 37.1 3.9 20 77-96 12-31 (212)
343 3sop_A Neuronal-specific septi 32.4 20 0.00068 40.4 2.7 23 77-99 4-26 (270)
344 2xb4_A Adenylate kinase; ATP-b 32.2 25 0.00086 38.1 3.4 24 78-101 3-26 (223)
345 2plr_A DTMP kinase, probable t 32.1 21 0.00071 38.0 2.7 20 77-96 6-25 (213)
346 1x79_B RAB GTPase binding effe 32.1 3.4E+02 0.012 25.8 10.6 33 757-789 3-35 (112)
347 2b5u_A Colicin E3; high resolu 31.9 2.6E+02 0.0089 33.3 11.6 52 772-823 319-370 (551)
348 3ney_A 55 kDa erythrocyte memb 31.7 24 0.00081 37.7 3.0 22 75-96 19-40 (197)
349 1gvn_B Zeta; postsegregational 31.7 19 0.00066 40.9 2.5 20 77-96 35-54 (287)
350 2pjz_A Hypothetical protein ST 31.7 16 0.00056 40.9 1.9 36 72-108 27-62 (263)
351 1u8z_A RAS-related protein RAL 31.7 17 0.00057 36.7 1.8 22 73-94 2-23 (168)
352 1nn5_A Similar to deoxythymidy 31.6 33 0.0011 36.5 4.3 20 77-96 11-30 (215)
353 2efl_A Formin-binding protein 31.5 3.1E+02 0.01 30.8 12.8 21 791-811 175-195 (305)
354 2b8t_A Thymidine kinase; deoxy 31.5 93 0.0032 33.8 7.8 92 68-161 5-116 (223)
355 4e61_A Protein BIM1; EB1-like 31.4 2.1E+02 0.0073 26.9 8.8 50 772-821 9-58 (106)
356 2ce2_X GTPase HRAS; signaling 31.3 17 0.0006 36.4 1.9 18 76-93 4-21 (166)
357 2w0m_A SSO2452; RECA, SSPF, un 31.3 22 0.00077 38.3 2.9 25 73-97 20-45 (235)
358 2npi_A Protein CLP1; CLP1-PCF1 31.2 23 0.0008 43.2 3.2 26 74-99 137-162 (460)
359 4dk0_A Putative MACA; alpha-ha 31.0 1.2E+02 0.004 35.5 9.4 67 756-822 73-149 (369)
360 3l4q_C Phosphatidylinositol 3- 30.8 1.4E+02 0.0048 30.7 8.3 83 746-828 38-136 (170)
361 1f5n_A Interferon-induced guan 30.8 3E+02 0.01 34.5 13.2 37 53-93 20-56 (592)
362 3lnc_A Guanylate kinase, GMP k 30.6 20 0.00069 39.0 2.3 23 74-96 25-48 (231)
363 2v3c_C SRP54, signal recogniti 30.5 24 0.00084 42.6 3.2 29 76-104 100-131 (432)
364 1ak2_A Adenylate kinase isoenz 30.4 28 0.00096 38.0 3.5 26 77-102 18-43 (233)
365 2b6h_A ADP-ribosylation factor 30.3 22 0.00074 37.4 2.4 25 69-93 23-47 (192)
366 2xfc_B E2 envelope glycoprotei 30.3 19 0.00064 41.5 1.9 44 1012-1055 282-327 (423)
367 2dr3_A UPF0273 protein PH0284; 30.2 39 0.0013 36.8 4.6 27 73-99 20-48 (247)
368 3haj_A Human pacsin2 F-BAR; pa 30.2 5.5E+02 0.019 31.1 15.5 26 824-849 211-236 (486)
369 2wji_A Ferrous iron transport 30.0 18 0.00062 36.9 1.7 21 75-95 3-23 (165)
370 2fic_A Bridging integrator 1; 29.9 3E+02 0.01 30.0 12.0 39 741-779 132-170 (251)
371 2xxa_A Signal recognition part 29.9 33 0.0011 41.5 4.2 32 75-106 100-135 (433)
372 1z2a_A RAS-related protein RAB 29.8 20 0.00068 36.2 2.0 18 77-94 7-24 (168)
373 3ake_A Cytidylate kinase; CMP 29.8 33 0.0011 36.3 3.8 26 77-102 4-29 (208)
374 1gk6_A Vimentin; intermediate 29.7 1.7E+02 0.0058 24.4 7.3 44 772-815 5-48 (59)
375 3aez_A Pantothenate kinase; tr 29.7 30 0.001 39.9 3.6 26 73-98 87-113 (312)
376 2yew_A Capsid protein, coat pr 29.6 5.6 0.00019 41.7 -2.2 16 1561-1576 40-55 (253)
377 3d31_A Sulfate/molybdate ABC t 29.6 22 0.00076 41.6 2.5 38 72-109 22-60 (348)
378 2k48_A Nucleoprotein; viral pr 29.6 3.1E+02 0.01 25.6 9.2 29 774-802 75-103 (107)
379 3oja_A Leucine-rich immune mol 29.5 1.9E+02 0.0066 35.2 11.3 30 820-849 432-461 (487)
380 1vht_A Dephospho-COA kinase; s 29.5 30 0.001 37.2 3.4 25 77-102 6-30 (218)
381 3vmx_A Voltage-gated hydrogen 29.4 2.2E+02 0.0074 22.7 7.2 25 784-808 14-38 (48)
382 4etp_A Kinesin-like protein KA 29.4 1.1E+02 0.0037 36.4 8.5 27 1368-1394 365-394 (403)
383 1m1j_B Fibrinogen beta chain; 29.4 6.7E+02 0.023 30.1 15.1 61 740-800 86-147 (464)
384 1kd8_B GABH BLL, GCN4 acid bas 29.4 1.2E+02 0.004 22.4 5.1 26 791-816 4-29 (36)
385 2jeo_A Uridine-cytidine kinase 29.3 26 0.00088 38.7 2.9 30 71-100 20-50 (245)
386 1fzq_A ADP-ribosylation factor 29.3 25 0.00086 36.5 2.7 27 68-94 7-35 (181)
387 3tqc_A Pantothenate kinase; bi 29.1 47 0.0016 38.4 5.1 33 68-100 81-117 (321)
388 4fla_A Regulation of nuclear P 29.1 3.9E+02 0.013 26.9 11.2 66 760-828 75-140 (152)
389 3oja_A Leucine-rich immune mol 28.8 1.7E+02 0.0059 35.6 10.7 40 807-846 426-465 (487)
390 2it1_A 362AA long hypothetical 28.7 26 0.00088 41.3 2.9 37 72-108 25-62 (362)
391 2ffh_A Protein (FFH); SRP54, s 28.7 57 0.002 39.2 6.0 53 75-129 98-153 (425)
392 4eaq_A DTMP kinase, thymidylat 28.7 36 0.0012 37.2 3.9 30 74-103 24-56 (229)
393 1x6v_B Bifunctional 3'-phospho 28.6 41 0.0014 42.5 4.9 45 62-106 33-86 (630)
394 2yyz_A Sugar ABC transporter, 28.5 26 0.00089 41.2 2.9 37 73-109 26-63 (359)
395 3qh9_A Liprin-beta-2; coiled-c 28.5 3E+02 0.01 24.4 8.6 46 793-838 31-76 (81)
396 2dyk_A GTP-binding protein; GT 28.5 22 0.00074 35.7 2.0 17 77-93 3-19 (161)
397 2v0o_A FCHO2, FCH domain only 28.4 6.1E+02 0.021 27.7 16.1 23 825-847 183-205 (276)
398 1ksh_A ARF-like protein 2; sma 28.4 22 0.00076 36.8 2.1 22 73-94 16-37 (186)
399 1z47_A CYSA, putative ABC-tran 28.3 26 0.0009 41.1 2.9 37 73-109 38-75 (355)
400 1gtv_A TMK, thymidylate kinase 28.3 20 0.00068 38.3 1.7 21 78-98 3-24 (214)
401 3e70_C DPA, signal recognition 28.3 27 0.00092 40.5 2.9 25 74-98 127-152 (328)
402 1g29_1 MALK, maltose transport 28.3 26 0.0009 41.4 2.9 35 74-108 28-62 (372)
403 2f1m_A Acriflavine resistance 28.0 2.1E+02 0.0071 31.8 10.4 24 760-783 60-83 (277)
404 3hhm_B NISH2 P85alpha; PI3KCA, 27.9 4.2E+02 0.014 31.0 13.0 84 747-830 148-247 (373)
405 2v54_A DTMP kinase, thymidylat 27.8 38 0.0013 35.8 3.8 29 77-105 6-35 (204)
406 1lwu_C Fibrinogen gamma chain; 27.7 1E+02 0.0034 35.4 7.4 36 781-816 19-54 (323)
407 2xtz_A Guanine nucleotide-bind 27.7 22 0.00077 41.7 2.1 24 77-100 11-34 (354)
408 3mq9_A Bone marrow stromal ant 27.6 4.5E+02 0.015 31.6 14.2 55 758-816 371-425 (471)
409 3fvq_A Fe(3+) IONS import ATP- 27.5 29 0.00099 40.8 3.0 37 72-108 26-63 (359)
410 2no2_A HIP-I, huntingtin-inter 27.4 4E+02 0.014 25.2 13.4 73 744-816 6-82 (107)
411 2ve7_C Kinetochore protein NUF 27.3 71 0.0024 35.4 5.9 59 740-801 124-182 (250)
412 2f1r_A Molybdopterin-guanine d 27.3 23 0.00077 36.9 1.8 33 77-109 4-39 (171)
413 1n0w_A DNA repair protein RAD5 27.2 56 0.0019 35.4 5.2 32 66-97 12-46 (243)
414 3m91_A Proteasome-associated A 27.1 2.4E+02 0.0082 22.9 7.2 30 782-811 17-46 (51)
415 3t1o_A Gliding protein MGLA; G 27.0 27 0.00093 36.3 2.5 20 76-95 15-34 (198)
416 3n40_P P62 envelope glycoprote 27.0 20 0.00067 41.1 1.3 39 1017-1055 347-387 (401)
417 1ny5_A Transcriptional regulat 26.9 51 0.0017 39.2 5.1 48 53-100 138-185 (387)
418 3tul_A Cell invasion protein S 26.9 2.4E+02 0.0083 27.8 8.6 27 796-822 101-127 (158)
419 3j0c_B E2 envelope glycoprotei 26.9 20 0.00068 41.3 1.3 43 1013-1055 283-327 (423)
420 1x8y_A Lamin A/C; structural p 26.9 3.5E+02 0.012 24.4 9.8 72 755-826 5-80 (86)
421 1v43_A Sugar-binding transport 26.8 29 0.00099 41.0 2.9 38 72-109 33-71 (372)
422 3d3q_A TRNA delta(2)-isopenten 26.7 57 0.0019 37.9 5.3 23 77-99 9-32 (340)
423 3ni0_A Bone marrow stromal ant 26.7 3.7E+02 0.013 24.5 10.5 68 764-845 22-89 (99)
424 3vmx_A Voltage-gated hydrogen 26.6 2.3E+02 0.0078 22.6 6.7 40 787-826 3-42 (48)
425 2l5g_A GPS2 protein, G protein 26.6 1.4E+02 0.0049 22.2 5.2 27 781-807 8-34 (38)
426 2yew_C E2 envelope glycoprotei 26.5 18 0.00061 41.6 0.9 44 1012-1055 280-325 (421)
427 2xv5_A Lamin-A/C; structural p 26.3 3.3E+02 0.011 23.9 9.0 54 773-826 4-57 (74)
428 1oix_A RAS-related protein RAB 26.3 31 0.0011 36.2 2.8 21 77-97 31-51 (191)
429 1fxk_A Prefoldin; archaeal pro 26.1 4E+02 0.014 24.7 12.0 20 748-767 10-29 (107)
430 3q72_A GTP-binding protein RAD 26.1 26 0.0009 35.3 2.1 17 77-93 4-20 (166)
431 1ky3_A GTP-binding protein YPT 26.1 25 0.00086 36.0 2.0 20 74-93 7-26 (182)
432 1gk6_A Vimentin; intermediate 26.0 2E+02 0.0069 24.0 7.1 50 777-826 3-52 (59)
433 1lw7_A Transcriptional regulat 26.0 26 0.00089 41.3 2.3 24 75-98 170-193 (365)
434 3rlf_A Maltose/maltodextrin im 25.9 31 0.0011 40.9 2.9 37 72-108 25-62 (381)
435 3b5x_A Lipid A export ATP-bind 25.9 33 0.0011 43.3 3.4 37 72-108 365-402 (582)
436 1l8d_A DNA double-strand break 25.8 4.2E+02 0.014 24.9 11.2 33 761-793 11-43 (112)
437 3m91_A Proteasome-associated A 25.8 2.6E+02 0.0089 22.7 7.2 38 761-798 10-47 (51)
438 3a7o_A Autophagy protein 16; c 25.7 3.2E+02 0.011 23.5 9.7 51 768-818 19-69 (75)
439 1z0j_A RAB-22, RAS-related pro 25.6 26 0.0009 35.4 2.0 18 77-94 8-25 (170)
440 4e61_A Protein BIM1; EB1-like 25.6 4.3E+02 0.015 24.9 11.2 53 775-827 5-57 (106)
441 2x77_A ADP-ribosylation factor 25.5 36 0.0012 35.3 3.1 24 70-93 16-40 (189)
442 3zvl_A Bifunctional polynucleo 25.5 22 0.00074 42.9 1.5 19 77-95 260-278 (416)
443 2erx_A GTP-binding protein DI- 25.4 27 0.00091 35.4 2.0 17 77-93 5-21 (172)
444 1c1y_A RAS-related protein RAP 25.4 25 0.00084 35.5 1.7 20 75-94 3-22 (167)
445 3q0x_A Centriole protein; cent 25.3 1.9E+02 0.0066 31.2 8.6 45 759-803 177-221 (228)
446 3con_A GTPase NRAS; structural 25.2 27 0.00091 36.4 2.0 19 76-94 22-40 (190)
447 2cxx_A Probable GTP-binding pr 25.2 28 0.00097 36.0 2.2 17 77-93 3-19 (190)
448 3ihw_A Centg3; RAS, centaurin, 25.1 28 0.00095 36.3 2.1 23 74-96 19-42 (184)
449 1g6u_A Domain swapped dimer; d 25.1 1.2E+02 0.0041 22.6 4.7 23 775-797 21-43 (48)
450 1oxx_K GLCV, glucose, ABC tran 25.0 26 0.00087 41.2 1.9 37 72-108 27-64 (353)
451 2f9l_A RAB11B, member RAS onco 25.0 31 0.0011 36.4 2.5 22 77-98 7-28 (199)
452 2f6r_A COA synthase, bifunctio 24.9 40 0.0014 38.1 3.5 26 77-103 77-102 (281)
453 1r8s_A ADP-ribosylation factor 24.9 28 0.00095 35.0 2.0 18 77-94 2-19 (164)
454 1g16_A RAS-related protein SEC 24.9 29 0.00098 35.1 2.1 18 77-94 5-22 (170)
455 1deq_A Fibrinogen (alpha chain 24.8 3.3E+02 0.011 31.4 10.7 30 755-784 69-98 (390)
456 1m1j_A Fibrinogen alpha subuni 24.8 3.1E+02 0.01 32.4 10.5 24 788-811 132-155 (491)
457 2e7s_A RAB guanine nucleotide 24.7 1.1E+02 0.0038 30.1 6.0 82 748-829 34-123 (135)
458 2lkc_A Translation initiation 24.7 34 0.0012 35.0 2.6 21 74-94 7-27 (178)
459 1q3t_A Cytidylate kinase; nucl 24.6 48 0.0016 36.2 4.0 26 77-102 18-43 (236)
460 2qag_B Septin-6, protein NEDD5 24.5 35 0.0012 41.0 3.0 26 71-96 35-63 (427)
461 3hd7_A Vesicle-associated memb 24.5 4E+02 0.014 24.2 10.2 55 760-814 5-59 (91)
462 2iwr_A Centaurin gamma 1; ANK 24.5 24 0.00081 36.2 1.4 22 73-94 5-26 (178)
463 3tui_C Methionine import ATP-b 24.3 35 0.0012 40.2 2.9 39 71-109 49-88 (366)
464 1nlf_A Regulatory protein REPA 24.2 37 0.0013 38.2 3.0 24 74-97 28-52 (279)
465 3pqc_A Probable GTP-binding pr 24.2 35 0.0012 35.4 2.7 20 75-94 23-42 (195)
466 1gk4_A Vimentin; intermediate 24.2 3.9E+02 0.013 23.9 9.3 69 758-826 6-78 (84)
467 3cvf_A Homer-3, homer protein 24.2 3.8E+02 0.013 23.8 9.8 57 755-811 15-71 (79)
468 3qf7_A RAD50; ABC-ATPase, ATPa 24.1 33 0.0011 40.5 2.7 29 71-99 19-47 (365)
469 2grj_A Dephospho-COA kinase; T 24.1 43 0.0015 35.5 3.3 26 78-103 15-40 (192)
470 2fn4_A P23, RAS-related protei 24.0 30 0.001 35.3 2.1 18 76-93 10-27 (181)
471 1wt6_A Myotonin-protein kinase 24.0 3.8E+02 0.013 23.8 10.0 41 773-813 30-70 (81)
472 1kao_A RAP2A; GTP-binding prot 24.0 27 0.00093 35.0 1.7 18 75-92 3-20 (167)
473 1f2t_A RAD50 ABC-ATPase; DNA d 24.0 38 0.0013 34.2 2.8 28 72-99 20-47 (149)
474 1wms_A RAB-9, RAB9, RAS-relate 24.0 29 0.001 35.4 2.0 18 77-94 9-26 (177)
475 2zej_A Dardarin, leucine-rich 23.9 30 0.001 35.9 2.1 18 77-94 4-21 (184)
476 3c9i_A Tail needle protein GP2 23.9 5.7E+02 0.02 26.6 11.1 69 762-830 79-147 (242)
477 1ek0_A Protein (GTP-binding pr 23.8 24 0.00081 35.7 1.2 19 75-93 3-21 (170)
478 1ltq_A Polynucleotide kinase; 23.8 34 0.0011 38.9 2.6 20 77-96 4-23 (301)
479 3ps5_A Tyrosine-protein phosph 23.6 42 0.0014 42.4 3.7 9 1414-1422 416-424 (595)
480 3c3f_A Alpha/beta peptide with 23.6 1.3E+02 0.0045 21.9 4.4 26 790-815 3-28 (34)
481 1vma_A Cell division protein F 23.5 36 0.0012 39.0 2.8 23 77-99 106-129 (306)
482 1nrj_B SR-beta, signal recogni 23.5 34 0.0012 36.5 2.5 21 74-94 11-31 (218)
483 2oxj_A Hybrid alpha/beta pepti 23.5 1.3E+02 0.0045 21.9 4.4 26 790-815 3-28 (34)
484 1sq5_A Pantothenate kinase; P- 23.3 60 0.002 37.2 4.6 25 74-98 78-103 (308)
485 1z08_A RAS-related protein RAB 23.3 31 0.0011 34.9 2.0 19 76-94 7-25 (170)
486 3tul_A Cell invasion protein S 23.2 3.3E+02 0.011 26.9 8.8 47 791-837 58-104 (158)
487 2ic6_A Nucleocapsid protein; h 23.2 3.1E+02 0.011 24.3 7.8 50 754-803 6-74 (78)
488 2h92_A Cytidylate kinase; ross 23.2 55 0.0019 35.0 4.1 27 77-103 5-31 (219)
489 3q85_A GTP-binding protein REM 23.2 31 0.0011 34.9 2.0 18 77-94 4-21 (169)
490 2f1m_A Acriflavine resistance 23.2 3.4E+02 0.012 29.9 11.0 22 758-779 65-86 (277)
491 2hxs_A RAB-26, RAS-related pro 23.2 29 0.001 35.4 1.8 21 74-94 5-25 (178)
492 3qf4_B Uncharacterized ABC tra 23.1 36 0.0012 43.1 2.9 38 72-109 377-415 (598)
493 4aby_A DNA repair protein RECN 23.1 25 0.00086 42.2 1.4 31 71-101 56-86 (415)
494 3swf_A CGMP-gated cation chann 23.1 1.4E+02 0.0046 26.2 5.4 15 785-799 18-32 (74)
495 2ke4_A CDC42-interacting prote 23.0 3.2E+02 0.011 25.4 8.5 66 780-845 14-91 (98)
496 2chq_A Replication factor C sm 23.0 1.3E+02 0.0044 33.9 7.5 187 975-1187 103-291 (319)
497 2hf9_A Probable hydrogenase ni 22.8 55 0.0019 35.1 4.1 34 58-93 23-56 (226)
498 1ls1_A Signal recognition part 22.8 38 0.0013 38.6 2.8 27 71-98 95-121 (295)
499 3b60_A Lipid A export ATP-bind 22.8 34 0.0012 43.1 2.6 62 74-138 368-429 (582)
500 2nzj_A GTP-binding protein REM 22.7 32 0.0011 35.0 2.0 17 77-93 6-22 (175)
No 1
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=100.00 E-value=8.4e-228 Score=2382.87 Aligned_cols=1229 Identities=22% Similarity=0.381 Sum_probs=963.3
Q ss_pred CCCccccCCHHHHHHHHHHHHHHHhccCCCCCcceeehHHHHHHHHHHHHHhcCCCCceEEEecCCchhhhHHHHHHHhc
Q psy4724 20 PLVYDEIDNLDLLTEKINQYIVDYNTQNSNKPIDIVTFLYIIQHISRLCRILQQPKGHAMLITIGGSGAAEVTKLATFMN 99 (1650)
Q Consensus 20 ~~~Y~~~~~~~~l~~~l~~~l~~yN~~~~~~~m~lVlF~~ai~Hv~rI~Ril~~p~G~alLvGvgGSGrqSLtrLAafi~ 99 (1650)
++.|+++ +.+.|+++++++|++||+. ..+||||||+|||+|||||+|||+||||||||||||||||||||||||||+
T Consensus 1594 ~~~Y~~v-~~~~l~~~l~~~L~~yn~~--~~~m~LVlF~daleHv~RI~RIL~qp~GhaLLVGvgGSGkqSLtrLAa~i~ 1670 (3245)
T 3vkg_A 1594 TKDYQPV-NRSDLREYVKARLKVFYEE--ELDVPLVLFNEVLDHILRIDRVFRQPQGHALLIGVSGGGKSVLSRFVAWMN 1670 (3245)
T ss_dssp C----CC-CHHHHHHHHHHHHHTTC--------CCCCCHHHHHHHHHHHHHHTSTTCCEEEEESTTSSHHHHHHHHHHHT
T ss_pred cccCccC-CHHHHHHHHHHHHHHHHhc--ccCceEEeHHHHHHHHHHHHHHHccCCCCeEEecCCCCcHHHHHHHHHHHh
Confidence 4579999 7899999999999999973 567999999999999999999999999999999999999999999999999
Q ss_pred CCceEEEEEcccCCcchhHHHHHHHHHHhccCCCCCEEEEEecCCcCchhhHHHHHHHHhhhhhccccccccccCCCCCc
Q psy4724 100 EYVLFEIEILKTYGLTDWRDDLCRLMKKSGGKDAKPMTFLFSDTQIQNEVFVEHINMLLNTARKRYNMDLTKSYGVCPSM 179 (1650)
Q Consensus 100 ~~~~fqIeitk~Yg~~~f~eDLk~l~~~~g~~~~k~~vFl~tD~qI~~E~fLedIN~lL~tge~~~~~~vp~l~~~v~~l 179 (1650)
||++|||+++|+||.++|+||||++|++|| ++|+++||||+|+||++|+||||||||||||| |||||+.
T Consensus 1671 ~~~vfqi~i~k~Y~~~~f~eDLk~l~~~aG-~~~~~~vFL~tD~qi~~e~FLE~IN~lL~sGE------VP~LF~~---- 1739 (3245)
T 3vkg_A 1671 GLSIYTIKVNNNYKSSDFDDDLRMLLKRAG-CKEEKICFIFDESNVLESSFLERMNTLLAGGE------VPGLFEG---- 1739 (3245)
T ss_dssp TCEEECCC----CCHHHHHHHHHHHHHHHH-TSCCCEEEEEEGGGCSSTHHHHHHHHHHHHSC------CTTSSCT----
T ss_pred CCeeEEEeeeCCCCHHHHHHHHHHHHHHHh-cCCCCEEEEEeccccccHHHHHHHHHHhccCC------ccccCCH----
Confidence 999999999999999999999999999999 89999999999999999999999999999999 9999999
Q ss_pred cchhhhhhhhcCcchHHhhhchhHHHHHHHHHHHhhhhccCCCCccchhHhHHHHHHHHHHHHhcCCccchhhHHHhhHH
Q psy4724 180 SIVHHLEDLNASPLVYDEIDNLDLLTEKINQYIVDYNTQNSNKPIDIVTFLYIIQHISRLCRILQQPKGHAMLITIGTYR 259 (1650)
Q Consensus 180 ~~~~~Le~~~~~~~v~~E~~~~~~l~e~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~f 259 (1650)
||. +.+.+.++..+ ...|...+ +.. ++|.||
T Consensus 1740 ----------------dE~---~~i~~~~r~~a-----~~~g~~~d--t~~-----------------------~l~~~F 1770 (3245)
T 3vkg_A 1740 ----------------EEF---TALMHACKETA-----QRNGLILD--SEE-----------------------ELYKYF 1770 (3245)
T ss_dssp ----------------TTH---HHHHHHHHHHH-----HHTTCCCC--CHH-----------------------HHHHHH
T ss_pred ----------------HHH---HHHHHHHHHHH-----HhcCCCCC--CHH-----------------------HHHHHH
Confidence 999 88899998887 44443221 333 799999
Q ss_pred HHHHhhhccchhhhcccchhhh---hhcccccccccceeEeeeccccCCCchhHHHHHHHHHHHHHhhcCCCCcHHHHHH
Q psy4724 260 VERKIALGRVHIIRTEKEIDDA---RMMYIPVSKHSSVLFFCCAELSNIDPMYQYSLNWFINLYVQSIEGSEKTDQLDKR 336 (1650)
Q Consensus 260 ~~~~~~l~~lhivlt~s~I~~~---R~~y~PvA~r~S~Ly~~~~~Ls~id~mYqfSl~~F~~lf~~~l~~s~~~~~l~~R 336 (1650)
++||+ .|||+|+||+|+|++ |++.|| +|++||+ ||||. . ||.++|.+
T Consensus 1771 i~rvr--~NLHvVL~mSPvg~~fR~R~r~fP------aLvncct------------IDWf~-----~----Wp~eAL~~- 1820 (3245)
T 3vkg_A 1771 TSQVR--RNLHVVFTMNPASPDFHNRSATSP------ALFNRCV------------LDWFG-----E----WSPEALFQ- 1820 (3245)
T ss_dssp HHHHT--TTCCEEEEECTTSTTTTC----CT------HHHHHSE------------EEEEE-----S----CCHHHHHH-
T ss_pred HHHHH--HcCEEEEEECCCCHHHHHHHHHCh------HHhhCce------------eeecC-----C----CCHHHHHH-
Confidence 99999 999999999999998 889999 9999999 99996 3 99999988
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhH----HHHHHhhhchhhhhHhhHHHHhhhcchhhhhhchhhhHHHHHHHHHhhhh
Q psy4724 337 LKILMNHFTYSIYKNICRSLFEDHKL----VFSFVLCTGQGEIAKSYIDEGLKKGLWIVLQNCHVAKSWMKELERICAEV 412 (1650)
Q Consensus 337 l~~l~~~lt~~vy~~v~r~Lfe~~kl----lfs~lL~~~~~~~a~~~i~~~~~~~~w~~l~~~~~~~~~~~~l~~~~~~~ 412 (1650)
|+.++...+- +..... .+.. .+...... .-......+..+ +..|. .+|.++.
T Consensus 1821 ---Va~~fl~~~~-------l~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~---~~~~~---~iH~sv~------ 1876 (3245)
T 3vkg_A 1821 ---VGSEFTRNLD-------LENPQYIAPPVFIQ-EAEIMGNN-LMAIPPSHRDAV---VSSLV---YIHQTIG------ 1876 (3245)
T ss_dssp ---HHHHHTTTSC-------CCCTTCCCCHHHHH-HHHC-----CCCSSCCHHHHH---HHHHH---HHHHHHH------
T ss_pred ---HHHHHHhhcc-------cccccccccccccc-hhcccccc-ccccchhHHHHH---HHHHH---HHHHHHH------
Confidence 8877733211 000000 0000 00000000 000000011111 23333 5566665
Q ss_pred cCCCCchHHHHHHhccCCCCCCCchhhccchhhhccCchhhHHHHhhhhcCCCCCCccccccccchhHHHHHHHHHhhHH
Q psy4724 413 IVPANTHQEFRLWLTSYPSTTFPVSVLENGIKMIIEPPKGIKNNLLRSYTNDPINSDDFYNDSKNVAAWHKLLFSLCLFH 492 (1650)
Q Consensus 413 ~~~~~~~~~f~~~l~~~~~~~~p~~~le~~lk~l~e~~~~~k~~ll~~~~~d~~~~~~~~~~~~~~~~f~kLL~~l~~~~ 492 (1650)
..+.+|...+.|++| +||.+|+++ + ..|+ .++..++ .
T Consensus 1877 ----~~s~~~~~~~~R~~y-vTP~syLel-----i---~~y~-~ll~~K~-----------------------------~ 1913 (3245)
T 3vkg_A 1877 ----EANIRLLKRQGRQNY-VTPRHYLDF-----I---NQVV-LLINEKR-----------------------------D 1913 (3245)
T ss_dssp ----HHHHHHHHSSSCCCC-CCHHHHHHH-----H---HHHH-HHHHHHH-----------------------------H
T ss_pred ----HHHHHHHHHhCCccc-CCHHHHHHH-----H---HHHH-HHHHHHH-----------------------------H
Confidence 345567777888999 999999998 5 6666 5555443 2
Q ss_pred HHHHHHHHhCCCCCCCCcccccchhHHHHHHHHHHHhccCCCChhhhhhhhhhHHHhhhhccCCccccccccchHHHHHH
Q psy4724 493 AVVQERKQYGPLGWNIPYEFNLSDLNISMKQLQMFLNDYTTIPFDALIYLTVDYKYTSQMRQKNPFTLTISRTTQIIEDF 572 (1650)
Q Consensus 493 ~~~~~r~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~ip~~~l~~l~~~l~~~~~~~~~~~~~~~i~~g~~~~e~l 572 (1650)
++...+. ++..|++++.++..+|+.|+.++. .+.|.++.+.+ +++++
T Consensus 1914 el~~~~~---------rl~~GL~KL~et~~~V~~l~~~L~--------~~~~~L~~k~~----------------ea~~~ 1960 (3245)
T 3vkg_A 1914 QLEEEQL---------HLNIGLKKLRDTEAQVKDLQVSLA--------QKNRELDVKNE----------------QANQK 1960 (3245)
T ss_dssp HHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHH----------------HHHHH
T ss_pred HHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHH----------------HHHHH
Confidence 3444444 677899999999999999998876 77888777765 55555
Q ss_pred HHHHHhcceehhccchhhHHHHHHHHHHHHHhcCCCCcchHHHhhhhcCCCCCcccccccchhhhhhcCCcccccccccc
Q psy4724 573 MLCIKKGLWIVLQNCHVAKSWMKELERICAEVIVPANTHQEFRLWLTSYPSTTFPVSVLENGIKMIIEPPKGIKNNLFRS 652 (1650)
Q Consensus 573 ~~~i~~g~wvllqn~~la~~~~~e~e~~l~~~~~p~~~~a~~~Lw~t~~~~~~~pi~~l~~~vk~v~E~~~glk~~l~~~ 652 (1650)
++.+....-.+.+.. ....+.++.+.+..
T Consensus 1961 l~~i~~~~~~ae~~k----~~v~~~~~~~~~~~----------------------------------------------- 1989 (3245)
T 3vkg_A 1961 LKQMVQDQQAAEIKQ----KDARELQVQLDVRN----------------------------------------------- 1989 (3245)
T ss_dssp HHHHHHHHHHHHHHH----HHHHHHHHHHHHHH-----------------------------------------------
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHH-----------------------------------------------
Confidence 555443221111000 00011111110000
Q ss_pred ccCCCCCCcchHhhhhhhhhhHHHHHHHhhhhHHHHHHHhhCCCCCCCCccCCcccHHHHHHHHHhhhcCCCCCchhhHh
Q psy4724 653 YTNDPINSDDFYNDSKNVAAWHKLLFSLCLFHAVVQERKQYGPLGWNIPYEFNLSDLNISMKQLQMFLNDYTTIPFDALI 732 (1650)
Q Consensus 653 ~~~~~~~~~~~w~~~k~~l~~~~~l~~L~~fHavv~ER~kf~~lG~ni~y~Fn~sDl~~~~~~l~~~l~~~~~~p~~~l~ 732 (1650)
+.+.+|+. + +-.. +
T Consensus 1990 --------------------------------~ei~~~k~----------~--------~e~d----L------------ 2003 (3245)
T 3vkg_A 1990 --------------------------------KEIAVQKV----------K--------AYAD----L------------ 2003 (3245)
T ss_dssp --------------------------------HHHHHHHH----------H--------HHHC----C------------
T ss_pred --------------------------------HHHHHHHH----------H--------HHHH----H------------
Confidence 00000000 0 0000 0
Q ss_pred HhhcCccchhhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4724 733 YLTASIPFQVLAMEVYDRVIKIVGPKKAKLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIE 812 (1650)
Q Consensus 733 ~~~~s~a~Wv~A~~~Y~~v~~~v~P~~~~l~~~e~~l~~~~~~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~ 812 (1650)
..+..| +|||+++++|++++++++++|++++++|++++++|++|+++|+++++|+++|+.+++
T Consensus 2004 -~~A~Pa----------------~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~ 2066 (3245)
T 3vkg_A 2004 -EKAEPT----------------GPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESS 2066 (3245)
T ss_dssp ------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -hhcCCC----------------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000011 999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhchhhccHHHHHHHHHHHHhhchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhcCCCCCCC
Q psy4724 813 LCKQKLERAEKLIGGLGGEKTRWSEASANLSKALVNCIGDILICAGIITYLGAFTVDFRNDLIEQWKSLSSQEQMPFTLS 892 (1650)
Q Consensus 813 ~~~~rl~ra~~Li~~L~~E~~rW~~~~~~~~~~~~~l~Gd~ll~aa~i~Y~G~f~~~~R~~l~~~w~~~~~~~~i~~~~~ 892 (1650)
.|+.||+||++||+||++|+.||++++++++.+..+|+||||||||||+|+|||+.+||+.+++.|...|++.+||++++
T Consensus 2067 ~~~~kl~rA~~Li~gL~~Ek~RW~~~~~~l~~~~~~L~GD~LLaaafisY~G~f~~~~R~~l~~~W~~~l~~~~Ip~s~~ 2146 (3245)
T 3vkg_A 2067 KVKNKVDRSIALLDNLNSERGRWEQQSENFNTQMSTVVGDVVLASAFLAYIGFFDQNFRTDLMRKWMIRLDSVGIKFKSD 2146 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHHTCCCCTT
T ss_pred HHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHhccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccCCHHHHHHHHhCCCCCCchhhhhhHHhhcCCCcccccCchhHHHHHHHHhccCC-cEEEecCChhHHHHHHHH
Q psy4724 893 FSMITTLGDAVKIRSWNINGLPVDNFSIENGIILFNSNKWPLLIDPQGQANKWLKNVEKGN-LSVVKLTDATLLRTLERA 971 (1650)
Q Consensus 893 ~~~~~~l~~~~~~~~w~~~gLP~D~~s~enaii~~~~~r~PLlIDPq~qa~~wik~~~~~~-l~v~~~~~~~~~~~le~a 971 (1650)
|++.++|+|+.++++|+.+|||+|++|+|||||++++.||||||||||||++|||++++++ +.|++++|++|+++||+|
T Consensus 2147 ~~l~~~L~~~~~i~~W~~~GLP~D~lSiENaiiv~~~~R~PLlIDPq~Qa~~WIk~~~~~~~l~v~~~~d~~f~~~LE~a 2226 (3245)
T 3vkg_A 2147 LSVPSFLSKPEERLNWHANSLPSDELCIENAIMLKRFNRYPLVIDPSGQAMEFLMNQYADKKITKTSFLDSSFMKNLESA 2226 (3245)
T ss_dssp CCHHHHTSCHHHHHHHHHTTCCSSHHHHHHHHHTTSCSSCEEEECTTSHHHHHHHHHTGGGCCCCCCC-----HHHHHHH
T ss_pred CCHHHHcCCHHHHHHHHhCCCCCCchhhhHHHHHhcCCCceEEEChHHHHHHHHHHHhccCCceEeecCchhHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999865 999999999999999999
Q ss_pred HHcCCeEEEecccccccccchHHHhHHHHhhcCeEEEEecCeeeeecCCeeEEEEeCCCCCCCCcccccceEEEEeeeCh
Q psy4724 972 IRTGTAVLLENIQETIDSSLEPVLLKSYYKIQNQLIMTLNNKEIEYNIKFRLYITTRLKNPHYIPEILTKITLINFMITP 1051 (1650)
Q Consensus 972 i~~G~~vlie~v~e~~dp~l~p~L~~~~~~~~~~~~i~ig~~~i~~~~~FrL~l~Tk~~np~~~pe~~~~~tvinf~vt~ 1051 (1650)
|++|+||||||| |++||+|+|||.|+++++||+.+|++||++|||||+||||||||++||||+||++++||+||||||+
T Consensus 2227 i~fG~pvLienv-E~lDP~L~pvL~k~~~k~gg~~~I~lGdk~idy~~~FrlyltTkl~np~y~Pev~~kvtlINFtvT~ 2305 (3245)
T 3vkg_A 2227 LRFGCPLLVQDV-ENIDPVLNPVLNKEIRKKGGRILIRLGDQDVDFSPSFMIFLFTRDPTAHFTPDLCSRVTFVNFTVTP 2305 (3245)
T ss_dssp HHHTCCEECCCC-C----------------------------------CCCEEEEECCTTCCCCHHHHHTSEEEECCCCH
T ss_pred HHcCCeEEEccc-cccchhHHHHHHHHHHhcCceEEEEECCeeEecCCCceEEEEecCCCCCCCHHHHhheEEEEEEecH
Confidence 999999999999 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhHHHHHHHHHHHH
Q psy4724 1052 QGLQNQLLGIVVAKEKPDLETKKNELIIESANNKKILKETEDKILEVLSSSQGNILEDESAVQILTSSKVLSAEITAKQE 1131 (1650)
Q Consensus 1052 ~gLe~qlL~~vv~~e~peLe~~~~~l~~~~~~~k~~L~~lEd~lL~~L~~s~g~iLdd~~li~~L~~sK~~~~~i~~~l~ 1131 (1650)
+|||+|||+.||++|+||||++|++|+++.+++|++|++|||+||+.|++|+||||||++||++|+++|.+|.+|+++++
T Consensus 2306 ~GLedQLL~~vv~~ErPeLE~~r~~Li~~~~~~k~~L~~LEd~lL~~Ls~s~GniLdd~~LI~~L~~sK~~s~eI~~kl~ 2385 (3245)
T 3vkg_A 2306 SSLQSQCLHEALKTERPDTHKKRSDLLKIQGEFQVKLRILEKSLLNALSQASGNILDDDSVISTLETLKKETTEIALKVE 2385 (3245)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHTTHHHHHHHHTTTHHHHHHHHTTSSCGGGCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhcCCcccccCHHHHHHHHHHhhhcccCc---ccHHHHHHHHHHHHHH
Q psy4724 1132 ISSRTEKEIDDARMMYIPVSKHSSVLFFCCAELSNIDPMYQYSLNWFINLYVQSIEGSEKT---DQLDKRLKILMNHFTY 1208 (1650)
Q Consensus 1132 ~~~~~~~~i~~~r~~y~pvA~~~s~lyf~l~~L~~i~~mYq~Sl~~f~~lf~~~i~~~~~~---~~~~~r~~~l~~~~t~ 1208 (1650)
++++|+++|+++|+.|||||.|||+|||++++|+.|| ||||||.||+++|..+|.+++++ +++++|+.+|++++|+
T Consensus 2386 ~a~~te~~I~~~R~~YrpvA~r~s~LyF~i~dL~~i~-mYQfSL~~F~~lF~~si~~s~~~~~~~~~~~Rl~~l~~~lt~ 2464 (3245)
T 3vkg_A 2386 ETETVMQEISEVSALYNPMALSCSRVYFAMEELSQFH-LYQFSLRAFLDIFYNLLNNNPNLVDKKDPNERLVYLSKDIFS 2464 (3245)
T ss_dssp HHHHHHHHHHHHHHHSHHHHHHHHHHHHHHTGGGGST-TCCCCHHHHHHHHHHHHSSCGGGSSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCC-eeeCCHHHHHHHHHHHHHhCccccccccHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999 99999999999999999998776 7899999999999999
Q ss_pred HHHHHHhhhccccCcchHHHHHH-HHHhhcCCCCCHHHHHHHhhcCccCCCCCC--CCCCCCCCHHhHHHHHHhc-CCCC
Q psy4724 1209 SIYKNICRSLFEDHKLVFSFVLC-TGIQRSNETLDETLFKYFLTGSIDLTMDSP--NPSPSWLSNKTWTDIIQIS-KLPQ 1284 (1650)
Q Consensus 1209 ~~y~~v~r~Lfe~~kllf~~~l~-~~i~~~~~~~~~~e~~~~l~g~~~~~~~~~--~~~~~wl~~~~w~~i~~L~-~~~~ 1284 (1650)
.+|.|||||||++|||+|+|+|| ++|+...|.++++||+|||+|+.......+ +|.++||++..|.+|+.|+ .+|.
T Consensus 2465 ~vy~~v~RgLFekdKLlFs~~l~~~~i~~~~~~i~~~E~~flL~g~~~~~~~~~~~~~~~~wl~~~~w~~i~~L~~~l~~ 2544 (3245)
T 3vkg_A 2465 MTFNRVTRTLLNDDKLTFALQLTIISVKGTSNEIEESEWDFLLKGGDNLTSIKETIPQLDSLLSTTQQKWLICLRQQVPS 2544 (3245)
T ss_dssp HHHHHHTTTSCGGGTTHHHHHHHHHHTTTSTTCCCHHHHHHHHHTTTTGGGCCCCCGGGTTTCCHHHHHHHHHHHHHCGG
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHhccCCCCHHHHHHHhcCCccccccccccCCccccCCHHHHHHHHHHHhhChh
Confidence 99999999999999999999999 588888999999999999999876654332 5668899999999999998 8999
Q ss_pred ccchHHHHhhChhhhHhhhcCCCCccccCC--Cccc-----------cchhHHHHHHHhhcCCchHHHHHHHHHhhcCCC
Q psy4724 1285 LGDLKASVKTKNSEWKSYYDSKTPEKERVS--YVQD-----------KSDICVLNILKIIRPDKVIQGIQIYVSKNLGEQ 1351 (1650)
Q Consensus 1285 f~~l~~~~~~~~~~W~~~~~~~~p~~~~~p--~~~~-----------l~~fq~lll~r~lrpdr~~~~~~~fi~~~lG~~ 1351 (1650)
|++|.+++..+.+.|++||+++.||...+| |... +++||||||+||+||||++.|+++||.+.||.+
T Consensus 2545 F~~l~~~~~~~~~~W~~~~~s~~pe~~~pp~~w~~~~~~~~~~~~~~l~~fqkLlllr~lRpDr~~~a~~~fV~~~lG~~ 2624 (3245)
T 3vkg_A 2545 FSKLVDHIQQNSSDWKQFFGKDQVGEPIIPESWIVAQAQLSNQQSTIVSNFRKILLMKAFHSDRVLQYSHSFVCSVFGED 2624 (3245)
T ss_dssp GTTHHHHHHHTHHHHHHHTCSSCSSCCCCCTTHHHHHHHHSSCCCHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHSCTT
T ss_pred hhhHHHHHHhCHHHHHHHhcccCcccccCccccccccccccccccchhhHHHHHHHHHHhCccHHHHHHHHHHHHHcCCc
Confidence 999999999999999999999999986555 6433 789999999999999999999999999999999
Q ss_pred cccCcccChhhhhh-cCCCCcceEEEcCCCcChHHHHHHHHHhcccCCCeeeccCcch----------------------
Q psy4724 1352 YIVSPPFSLKQSYD-DSNCCTPLIFILSAGSDPMDLLLKFNSDMNAAKPLTVSLGQGI---------------------- 1408 (1650)
Q Consensus 1352 ~~~~~~~~l~~~~~-~s~~~~P~ifils~g~DP~~~l~~~a~~~~~~~~~~islGqgq---------------------- 1408 (1650)
|++||++||+.+|+ ||+|+||+|||||||+||+..|.+||++++. ++++|||||||
T Consensus 2625 fv~~~~~dl~~~~~~es~~~tPlifilSpG~DP~~~l~~lA~~~~~-~~~~iSLGqgQg~~~A~~~i~~a~~~G~WV~Lq 2703 (3245)
T 3vkg_A 2625 FLNTQELDMANIVEKEVKSSSPLLLCSVPGYDASSKVDDLALQLHK-QYKSFAIGSPEGFELAEKSIYAAAKSGTWVLLK 2703 (3245)
T ss_dssp TTCC--CCHHHHHHHSSCTTSCEECEECTTCCCHHHHHHHHHHHTC-CCCCCBTTSHHHHHHHHHHHHHHHHHTCEEECB
T ss_pred cCCCCCCCHHHHHhccCCCCccEEEEeCCCCChHHHHHHHHHHhCC-CcEEEECCCCccHHHHHHHHHHHHHcCCEEEEe
Confidence 99999999999999 9999999999999999999999999999864 79999999997
Q ss_pred --------------------------------------------------------------------------------
Q psy4724 1409 -------------------------------------------------------------------------------- 1408 (1650)
Q Consensus 1409 -------------------------------------------------------------------------------- 1408 (1650)
T Consensus 2704 NcHL~~sWl~~LEk~le~~~~h~~FRLwLTsep~~~fP~~iLq~siKit~EpP~GlkaNl~rs~~~~~~~~~~~~~~~~~ 2783 (3245)
T 3vkg_A 2704 NIHLAPQWLVQLEKKLHSLSPHPSFRLFMTSEIHPALPANLLRMSNVFSYENPPGVKANLLHTFIGIPATRMDKQPAERS 2783 (3245)
T ss_dssp CGGGCTTTHHHHHHHHHTCCCCTTCEEECCEESCTTSCHHHHHTSEECCBCCCSSHHHHHHHHHTTSCHHHHTSSSTHHH
T ss_pred chhhhHhHHHHHHHHHHccCCCCCeeEEEEecCCCCCCHHHHHhhhHheeCCChhHHHHHHHHHHhCCHHHhccCcHHHH
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q psy4724 1409 -------------------------------------------------------------------------------- 1408 (1650)
Q Consensus 1409 -------------------------------------------------------------------------------- 1408 (1650)
T Consensus 2784 ~llf~L~fFHAvvqERrkfgplGWn~~YeFn~sDl~~s~~~l~~~l~~~~~~~~n~~~~~iPw~~L~yl~gei~YGGrVt 2863 (3245)
T 3vkg_A 2784 RIYFLLAWFHAIIQERLRYIPLGWTKFFEFNDADLRGALDSIDYWVDLYSKGRSNIDPDKIPWIAVRTILGSTIYGGRID 2863 (3245)
T ss_dssp HHHHHHHHHHHHHHHGGGGTTTSCSSCCCCCHHHHHHHHHHHHHHHHHHSTTCSCCCTTTSCHHHHHHCCCCCCCSTTCC
T ss_pred HHHHHHHHHHHHHHHHHHhCccccCcccccchHHHHHHHHHHHHHHHHhcccccccCCCCCCHHHHHHHHhhcccCCccC
Confidence
Q ss_pred --------------------------------------------HHHhhcCCCCCCCcccccccchhhhhhhhhHHHHHH
Q psy4724 1409 --------------------------------------------QSYIQSLPLNNTPEIFGLHENADLTKNFNETRLVLG 1444 (1650)
Q Consensus 1409 --------------------------------------------~~~i~~lp~~~~p~~fglh~na~i~~~~~~~~~~~~ 1444 (1650)
.+||++||..|+|++||||+||+|++++++|+.+++
T Consensus 2864 Dd~DrrlL~t~l~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~y~~~I~~LP~~~~P~~fGLh~NA~i~~~~~~s~~l~~ 2943 (3245)
T 3vkg_A 2864 NEFDMRLLYSFLEQLFTPSAFNPDFPLVPSIGLSVPEGTTRAHFMKWIEALPEISTPIWLGLPENAESLLLSNKARKMIN 2943 (3245)
T ss_dssp SSSHHHHHHHHHHHHSSGGGGSSSCEEEGGGTEECCCCSSHHHHHHHHTTSCSCCCGGGGTSCTTHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCHhhcCCcccCCCCCCCCCCCCCCHHHHHHHHHhCCCCCCccccCCChhHHHHHHHHHHHHHHH
Confidence 078999999999999999999999999999999999
Q ss_pred HHHhhccCCCCCC-------C--------CCCChhhHHHHHHHHHHhhCCCCCCHHHHhcccCCccccchhHHHHHHHHH
Q psy4724 1445 NILLCAQQGSTPG-------A--------QPGDAEAKNVRIIDELLGKFPEQFDEEAAGRKYPILYNQSMNTVLKQELIR 1509 (1650)
Q Consensus 1445 ~~~~~~~~~~~~~-------~--------~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~vl~qE~~r 1509 (1650)
+++.+||+.++++ + ++.++++.|.+++++|+++||+.||.. .+++..+.+||++||.|||+|
T Consensus 2944 ~ll~lq~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~lP~~~~~~---~~~~~~~~~pl~~vl~QE~~r 3020 (3245)
T 3vkg_A 2944 DLQKMQSSEEDGEDDQVSGSSKKESSSSSSEDKGKAKLRATITEWTKLLPKPLKQL---KRTTQNIKDPLFRCFEREIST 3020 (3245)
T ss_dssp HHHHHHHTTTC---------------CHHHHHHHHHC-------------------------------CCHHHHHHHHHH
T ss_pred HHHHhCCcccccccccccccccccccccccCCCcHHHHHHHHHHHHHhCccccchh---hccccccCChHHHHHHHHHHH
Confidence 9999999865432 0 112456668999999999999999842 345566789999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCcccCCHhHHHHHHhHhcCCCcccchhccCCCCCCchhhHHHHHHhhcccch
Q psy4724 1510 YNRLTVIIKKSLQEVRQAVKGLIVMSKELEEINTSIMFGKIPQAWASKSYPSLKPLGSYIVDLLARREGRGE 1581 (1650)
Q Consensus 1510 ~n~ll~~i~~sL~~l~~a~~G~~~ms~~le~~~~~l~~~~vP~~W~~~~~ps~k~L~~w~~dl~~r~e~~~~ 1581 (1650)
||+||..||+||.+|++||+|+++||++||++++||++|+||+.|.+.+|||.+||++|+.||+.|+++-..
T Consensus 3021 ~n~Ll~~ir~sL~~L~~aikG~i~mS~~le~l~~sl~~~~VP~~W~~~syps~k~L~~W~~dL~~R~~~l~~ 3092 (3245)
T 3vkg_A 3021 GGKLVKKITNDLANLLELISGNIKSTNYLRSLTTSISKGIVPKEWKWYSVPETISLSVWISDFSKRMQQLSE 3092 (3245)
T ss_dssp HHHHHHHHHHHHHHHC-----------------------------CCSCCCSSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHhCCCCcCCHHHHHHHHHHHcCCCchhhhcccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999877543
No 2
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=100.00 E-value=1.4e-167 Score=1772.55 Aligned_cols=860 Identities=18% Similarity=0.284 Sum_probs=709.1
Q ss_pred CCccccCCHHHHHHHHHHHHHHHhccCCCCCcceeehHHHHHHHHHHHHHhcCCCCceEEEecCCchhhhHHHHHHHhcC
Q psy4724 21 LVYDEIDNLDLLTEKINQYIVDYNTQNSNKPIDIVTFLYIIQHISRLCRILQQPKGHAMLITIGGSGAAEVTKLATFMNE 100 (1650)
Q Consensus 21 ~~Y~~~~~~~~l~~~l~~~l~~yN~~~~~~~m~lVlF~~ai~Hv~rI~Ril~~p~G~alLvGvgGSGrqSLtrLAafi~~ 100 (1650)
+.|++|++ +.++++++++|++||+. +.+||||||+|||+|||||+|||+||||||||||||||||||||||||||+|
T Consensus 1558 ~~Y~~v~~-~~l~~~l~~~l~~yn~~--~~~m~LVlF~dai~Hi~RI~Ril~~p~G~~LLvGvgGsGkqSltrLaa~i~~ 1634 (2695)
T 4akg_A 1558 LDFKEVNK-TDLVNFIEERFKTFCDE--ELEVPMVIHESMVDHILRIDRALKQVQGHMMLIGASRTGKTILTRFVAWLNG 1634 (2695)
T ss_dssp SSCEECCH-HHHHHHHHHHHHHHHHH--SCCCCCCCCHHHHHHHHHHHHHHHSSSEEEEEECTTTSCHHHHHHHHHHHTT
T ss_pred CcceecCH-HHHHHHHHHHHHHHHhh--cCCceeeeHHHHHHHHHHHHHHHcCCCCCEEEECCCCCcHHHHHHHHHHHhC
Confidence 46999965 78999999999999983 5789999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEEcccCCcchhHHHHHHHHHHhccCCCCCEEEEEecCCcCchhhHHHHHHHHhhhhhccccccccccCCCCCcc
Q psy4724 101 YVLFEIEILKTYGLTDWRDDLCRLMKKSGGKDAKPMTFLFSDTQIQNEVFVEHINMLLNTARKRYNMDLTKSYGVCPSMS 180 (1650)
Q Consensus 101 ~~~fqIeitk~Yg~~~f~eDLk~l~~~~g~~~~k~~vFl~tD~qI~~E~fLedIN~lL~tge~~~~~~vp~l~~~v~~l~ 180 (1650)
|++|||+++|+||.++|+||||++|++|| ++|+++||||+|+||++|+||||||||||||| |||||+.
T Consensus 1635 ~~~fqi~~~~~Y~~~~f~eDLk~l~~~aG-~~~~~~vFL~tD~qi~~e~FLE~IN~lL~sGE------VP~LF~~----- 1702 (2695)
T 4akg_A 1635 LKIVQPKIHRHSNLSDFDMILKKAISDCS-LKESRTCLIIDESNILETAFLERMNTLLANAD------IPDLFQG----- 1702 (2695)
T ss_dssp CEEECCCCCTTCCHHHHHHHHHHHHHHHH-HSCCCEEEEEETTTCCSHHHHHHHHHHHHSSS------CTTTSCT-----
T ss_pred CeeEEEEeeCCCCHHHHHHHHHHHHHHcC-CCCCceEEEEeccccccHHHHHHHHHHHccCC------CCCCCCH-----
Confidence 99999999999999999999999999999 79999999999999999999999999999999 9999999
Q ss_pred chhhhhhhhcCcchHHhhhchhHHHHHHHHHHHhhhhccCCCCccchhHhHHHHHHHHHHHHhcCCccchhhHHHhhHHH
Q psy4724 181 IVHHLEDLNASPLVYDEIDNLDLLTEKINQYIVDYNTQNSNKPIDIVTFLYIIQHISRLCRILQQPKGHAMLITIGTYRV 260 (1650)
Q Consensus 181 ~~~~Le~~~~~~~v~~E~~~~~~l~e~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~f~ 260 (1650)
||+ +.+.+.+++.+ +..|...+ +.. ++|.||+
T Consensus 1703 ---------------dE~---~~i~~~~r~~~-----~~~g~~~~--t~~-----------------------~l~~~Fi 1734 (2695)
T 4akg_A 1703 ---------------EEY---DKLLNNLRNKT-----RSLGLLLD--TEQ-----------------------ELYDWFV 1734 (2695)
T ss_dssp ---------------HHH---HHHHHHHHHHH-----HHHTCCCC--SHH-----------------------HHHHHHH
T ss_pred ---------------HHH---HHHHHHhHHHH-----HhcCCCCC--CHH-----------------------HHHHHHH
Confidence 999 88999998877 33343221 233 7999999
Q ss_pred HHHhhhccchhhhcccchhhh---hhcccccccccceeEeeeccccCCCchhHHHHHHHHHHHHHhhcCCCCcHHHHHHH
Q psy4724 261 ERKIALGRVHIIRTEKEIDDA---RMMYIPVSKHSSVLFFCCAELSNIDPMYQYSLNWFINLYVQSIEGSEKTDQLDKRL 337 (1650)
Q Consensus 261 ~~~~~l~~lhivlt~s~I~~~---R~~y~PvA~r~S~Ly~~~~~Ls~id~mYqfSl~~F~~lf~~~l~~s~~~~~l~~Rl 337 (1650)
+||+ .|||+|+||+|+|+. |++.|| +|++||+ ||||. . ||.++|.+
T Consensus 1735 ~rvr--~NLHvVL~mSP~g~~fr~R~r~fP------aLvn~ct------------IdWf~-----~----Wp~eAL~~-- 1783 (2695)
T 4akg_A 1735 GEIA--KNLHVVFTICDPTNNKSSAMISSP------ALFNRCI------------INWMG-----D----WDTKTMSQ-- 1783 (2695)
T ss_dssp HHHH--HHCEEEEEESCTTSHHHHHHHHSH------HHHHHSE------------EEECC-----S----CCHHHHHH--
T ss_pred HHHH--HcCEEEEEECCCChHHHHHHHhCh------Hhhccee------------EeecC-----C----CCHHHHHH--
Confidence 9999 999999999999987 888899 9999999 99996 3 99999987
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhhchhhhhHhhHHHHhhhcchhhhhhchhhhHHHHHHHHHhhhhcCCCC
Q psy4724 338 KILMNHFTYSIYKNICRSLFEDHKLVFSFVLCTGQGEIAKSYIDEGLKKGLWIVLQNCHVAKSWMKELERICAEVIVPAN 417 (1650)
Q Consensus 338 ~~l~~~lt~~vy~~v~r~Lfe~~kllfs~lL~~~~~~~a~~~i~~~~~~~~w~~l~~~~~~~~~~~~l~~~~~~~~~~~~ 417 (1650)
|+.++ +++..
T Consensus 1784 --Va~~f------------l~~~~-------------------------------------------------------- 1793 (2695)
T 4akg_A 1784 --VANNM------------VDVIP-------------------------------------------------------- 1793 (2695)
T ss_dssp --HHHHH------------SCSCC--------------------------------------------------------
T ss_pred --HHHHH------------hhccC--------------------------------------------------------
Confidence 66555 11100
Q ss_pred chHHHHHHhccCCCCCCCchhhccchhhhccCchhhHHHHhhhhcCCCCCCccccccccchhHHHHHHHHHhhHHHHHHH
Q psy4724 418 THQEFRLWLTSYPSTTFPVSVLENGIKMIIEPPKGIKNNLLRSYTNDPINSDDFYNDSKNVAAWHKLLFSLCLFHAVVQE 497 (1650)
Q Consensus 418 ~~~~f~~~l~~~~~~~~p~~~le~~lk~l~e~~~~~k~~ll~~~~~d~~~~~~~~~~~~~~~~f~kLL~~l~~~~~~~~~ 497 (1650)
+...++ ++|.++++. +. ... .... +.
T Consensus 1794 --------~~~~~y-~tp~s~le~-----~~---~~~-----------------------~~~~----------~~---- 1819 (2695)
T 4akg_A 1794 --------MEFTDF-IVPEVNKEL-----VF---TEP-----------------------IQTI----------RD---- 1819 (2695)
T ss_dssp --------CCCCCC------------------------------------------------CH----------HH----
T ss_pred --------cccccc-cCchHHHHH-----Hh---hhh-----------------------hhHH----------HH----
Confidence 001123 566665554 10 000 0000 00
Q ss_pred HHHhCCCCCCCCcccccchhHHHHHHHHHHHhccCCCChhhhhhhhhhHHHhhhhccCCccccccccchHHHHHHHHHHH
Q psy4724 498 RKQYGPLGWNIPYEFNLSDLNISMKQLQMFLNDYTTIPFDALIYLTVDYKYTSQMRQKNPFTLTISRTTQIIEDFMLCIK 577 (1650)
Q Consensus 498 r~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~ip~~~l~~l~~~l~~~~~~~~~~~~~~~i~~g~~~~e~l~~~i~ 577 (1650)
.....+..+
T Consensus 1820 ----------------------------------------------------------------------~l~~~l~~~- 1828 (2695)
T 4akg_A 1820 ----------------------------------------------------------------------AVVNILIHF- 1828 (2695)
T ss_dssp ----------------------------------------------------------------------HHHHHHHHH-
T ss_pred ----------------------------------------------------------------------HHHHHHHHH-
Confidence 000000000
Q ss_pred hcceehhccchhhHHHHHHHHHHHHHhcCCCCcchHHHhhhhcCCCCCcccccccchhhhhhcCCccccccccccccCCC
Q psy4724 578 KGLWIVLQNCHVAKSWMKELERICAEVIVPANTHQEFRLWLTSYPSTTFPVSVLENGIKMIIEPPKGIKNNLFRSYTNDP 657 (1650)
Q Consensus 578 ~g~wvllqn~~la~~~~~e~e~~l~~~~~p~~~~a~~~Lw~t~~~~~~~pi~~l~~~vk~v~E~~~glk~~l~~~~~~~~ 657 (1650)
|. ++ ...
T Consensus 1829 ----------~~------~~---~~~------------------------------------------------------ 1835 (2695)
T 4akg_A 1829 ----------DR------NF---YQK------------------------------------------------------ 1835 (2695)
T ss_dssp ----------HH------HH---HHH------------------------------------------------------
T ss_pred ----------HH------HH---HHH------------------------------------------------------
Confidence 00 00 000
Q ss_pred CCCcchHhhhhhhhhhHHHHHHHhhhhHHHHHHHhhCCCCCCCCccCCcccHHHHHHHHHhhhcCCCCCchhhHhHhhcC
Q psy4724 658 INSDDFYNDSKNVAAWHKLLFSLCLFHAVVQERKQYGPLGWNIPYEFNLSDLNISMKQLQMFLNDYTTIPFDALIYLTAS 737 (1650)
Q Consensus 658 ~~~~~~w~~~k~~l~~~~~l~~L~~fHavv~ER~kf~~lG~ni~y~Fn~sDl~~~~~~l~~~l~~~~~~p~~~l~~~~~s 737 (1650)
|.. | ..| .+
T Consensus 1836 -----------------------------------~~~-~--~~~---------------------------------~~ 1844 (2695)
T 4akg_A 1836 -----------------------------------MKV-G--VNP---------------------------------RS 1844 (2695)
T ss_dssp -----------------------------------TCC-S--SSC---------------------------------CC
T ss_pred -----------------------------------hhh-c--ccC---------------------------------CC
Confidence 000 0 000 00
Q ss_pred ccchhhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4724 738 IPFQVLAMEVYDRVIKIVGPKKAKLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQK 817 (1650)
Q Consensus 738 ~a~Wv~A~~~Y~~v~~~v~P~~~~l~~~e~~l~~~~~~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~r 817 (1650)
...|+.++..|.+. +.+|+++++++++.+....++ |+++.+++++|+++++
T Consensus 1845 p~~fl~~l~~~~~~---~~~k~~~l~~~~~~l~~~l~k-------L~e~~~~v~~l~~~l~------------------- 1895 (2695)
T 4akg_A 1845 PGYFIDGLRALVKL---VTAKYQDLQENQRFVNVGLEK-------LNESVLKVNELNKTLS------------------- 1895 (2695)
T ss_dssp SSHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-------HHHHC------------------------------
T ss_pred hHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH-------------------
Confidence 01233344444333 235666666666555555544 4444445555555444
Q ss_pred HHHHHHHHhhhchhhccHHHHHHHHHHHHhhchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhcCCCCCCCCcccc
Q psy4724 818 LERAEKLIGGLGGEKTRWSEASANLSKALVNCIGDILICAGIITYLGAFTVDFRNDLIEQWKSLSSQEQMPFTLSFSMIT 897 (1650)
Q Consensus 818 l~ra~~Li~~L~~E~~rW~~~~~~~~~~~~~l~Gd~ll~aa~i~Y~G~f~~~~R~~l~~~w~~~~~~~~i~~~~~~~~~~ 897 (1650)
++||+||++|+.||++++++++.+..+|+||||||||||+|+|||+.+||+.++..|...|++.+||++++|++.+
T Consensus 1896 ----~~Li~~L~~E~~RW~~~~~~~~~~~~~l~Gd~ll~aafisY~G~f~~~~R~~l~~~W~~~~~~~~ip~~~~~~~~~ 1971 (2695)
T 4akg_A 1896 ----ISLVKSLTFEKERWLNTTKQFSKTSQELIGNCIISSIYETYFGHLNERERADMLVILKRLLGKFAVKYDVNYRFID 1971 (2695)
T ss_dssp --------CTTHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHHTTCCCCSSCCHHH
T ss_pred ----HHHHHhhhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCCCCCCCCHHH
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCHHHHHHHHhCCCCCCchhhhhhHHhhcC-CCcccccCchhHHHHHHHHhccCCcEEEecCChhHHHHHHHHHHcCC
Q psy4724 898 TLGDAVKIRSWNINGLPVDNFSIENGIILFNS-NKWPLLIDPQGQANKWLKNVEKGNLSVVKLTDATLLRTLERAIRTGT 976 (1650)
Q Consensus 898 ~l~~~~~~~~w~~~gLP~D~~s~enaii~~~~-~r~PLlIDPq~qa~~wik~~~~~~l~v~~~~~~~~~~~le~ai~~G~ 976 (1650)
+|+|+.++++|+.+|||+|++|+|||||++++ .||||||||||||++|||++++++++|++++|++|+++||+||++|+
T Consensus 1972 ~L~~~~~i~~W~~~GLP~D~~s~eNaii~~~s~~r~PL~IDPq~qa~~wik~~~~~~l~v~~~~d~~f~~~lE~ai~~G~ 2051 (2695)
T 4akg_A 1972 YLVTLDEKMKWLECGLDKNDYFLENMSIVMNSQDAVPFLLDPSSHMITVISNYYGNKTVLLSFLEEGFVKRLENAIRFGS 2051 (2695)
T ss_dssp HHCCHHHHHHHHHHTCCSCHHHHHHHHHHHHCCSSEEEEECSSTTHHHHHHHHHGGGEEEECTTSSTHHHHHHHHHHTTC
T ss_pred HhcCHHHHHHHHhcCCCCCchhHhHHHHHhcccccCceEECcHHHHHHHHHHHhcCCceEeeCCcHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999997 99999999999999999999877799999999999999999999999
Q ss_pred eEEEecccccccccchHHHhHHHHhhcCeEEEEecCeeeeecCCeeEEEEeCCCCCCCCcccccceEEEEeeeChhhHHH
Q psy4724 977 AVLLENIQETIDSSLEPVLLKSYYKIQNQLIMTLNNKEIEYNIKFRLYITTRLKNPHYIPEILTKITLINFMITPQGLQN 1056 (1650)
Q Consensus 977 ~vlie~v~e~~dp~l~p~L~~~~~~~~~~~~i~ig~~~i~~~~~FrL~l~Tk~~np~~~pe~~~~~tvinf~vt~~gLe~ 1056 (1650)
|||||| +|++||+|+|||.|+++++||+.+|++||++|||||+||||||||++||||+||++++||+||||||++|||+
T Consensus 2052 pvLien-~E~lDp~L~pvL~k~~~k~gg~~~i~lGdk~idy~~~FrlyltTkl~np~y~Pei~~~vt~iNFtvT~~GLed 2130 (2695)
T 4akg_A 2052 VVIIQD-GEFFDPIISRLISREFNHAGNRVTVEIGDHEVDVSGDFKLFIHSCDPSGDIPIFLRSRVRLVHFVTNKESIET 2130 (2695)
T ss_dssp EEEESC-SSSCCSTTHHHHTTCCEECSSCEEEECSSSEEECCSSCEEEEEECCTTCCCCHHHHHHEEEEECCCCSHHHHH
T ss_pred eEEEcc-ccccchhHHHHHhhHhhhcCCeEEEEECCeeEecCCCceEEEeeCCCCCCCCHHHHhheeEEEEEEcHHHHHH
Confidence 999999 6999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy4724 1057 QLLGIVVAKEKPDLETKKNELIIESANNKKILKETEDKILEVLSSSQGNILEDESAVQILTSSKVLSAEITAKQEISSRT 1136 (1650)
Q Consensus 1057 qlL~~vv~~e~peLe~~~~~l~~~~~~~k~~L~~lEd~lL~~L~~s~g~iLdd~~li~~L~~sK~~~~~i~~~l~~~~~~ 1136 (1650)
|||+.||++|+||||++|++|+++.+++|++|++|||+||+.|++|+||||||++||++|+++|.+|.+|+++++++++|
T Consensus 2131 QLL~~vv~~ErPdLE~~r~~Li~~~~~~k~~Lk~lEd~lL~~Ls~s~GniLdd~~lI~~L~~sK~~a~eI~~kl~~a~~t 2210 (2695)
T 4akg_A 2131 RIFDITLTEENAEMQRKREDLIKLNTEYKLKLKNLEKRLLEELNNSQGNMLENDELMVTLNNLKKEAMNIEKKLSESEEF 2210 (2695)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSSCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCccCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHhhcCCcccccCHHHHHHHHHHhh-hcccCcccHHHHHHHHHHHHHHHHHHHHh
Q psy4724 1137 EKEIDDARMMYIPVSKHSSVLFFCCAELSNIDPMYQYSLNWFINLYVQSI-EGSEKTDQLDKRLKILMNHFTYSIYKNIC 1215 (1650)
Q Consensus 1137 ~~~i~~~r~~y~pvA~~~s~lyf~l~~L~~i~~mYq~Sl~~f~~lf~~~i-~~~~~~~~~~~r~~~l~~~~t~~~y~~v~ 1215 (1650)
+++|+++|+.|||||.|||+|||++++|+.|||||||||.||+++|..+| .++++++++++|+.+|++++|+.+|.|||
T Consensus 2211 ~~~I~~~R~~YrpvA~r~s~LyF~i~dL~~i~~mYq~SL~~F~~lF~~~i~~~s~~~~~~~~R~~~l~~~~t~~vy~~v~ 2290 (2695)
T 4akg_A 2211 FPQFDNLVEEYSIIGKHSVKIFSMLEKFGQFHWFYGISIGQFLSCFKRVFIKKSRETRAARTRVDEILWLLYQEVYCQFS 2290 (2695)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHTTC----------CHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHhccCchhhCCHHHHHHHHHHHHHhhCcccccHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999 89999999999999999999999999999
Q ss_pred hhccccCcchHHHHHHHHHhhcCCCCCHHH-HHHHhhcCccCCCCCCCCCCCCCCHHhHHHHHHhcCCCCccchHHHHhh
Q psy4724 1216 RSLFEDHKLVFSFVLCTGIQRSNETLDETL-FKYFLTGSIDLTMDSPNPSPSWLSNKTWTDIIQISKLPQLGDLKASVKT 1294 (1650)
Q Consensus 1216 r~Lfe~~kllf~~~l~~~i~~~~~~~~~~e-~~~~l~g~~~~~~~~~~~~~~wl~~~~w~~i~~L~~~~~f~~l~~~~~~ 1294 (1650)
|||||+|||+|+|+||++|+...+.++.+| |.+|++|. .. .+|.|.|++...|
T Consensus 2291 r~Lfe~dkl~fs~~l~~~i~~~~~~~~~~e~~~~~l~~~-~~----~~~~~~~~~~~~~--------------------- 2344 (2695)
T 4akg_A 2291 TALDKKFKMIMAMTMFCLYKFDIESEQYKEAVLTMIGVL-SE----SSDGVPKLTVDTN--------------------- 2344 (2695)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-SS----SCCCCCCCCTTTC---------------------
T ss_pred HHHHHhhHHHHHHHHHHHHHhhcCCCchHHHHHHHHhcc-cc----CCCCcccccccch---------------------
Confidence 999999999999999999999888888777 78888774 11 1333344432211
Q ss_pred ChhhhHhhhcCCCCccccCCCccccchhHHHHHHHhhcCCchHHHHHHHHHhhcCCCcccCcccChhhhhhcCCCCcceE
Q psy4724 1295 KNSEWKSYYDSKTPEKERVSYVQDKSDICVLNILKIIRPDKVIQGIQIYVSKNLGEQYIVSPPFSLKQSYDDSNCCTPLI 1374 (1650)
Q Consensus 1295 ~~~~W~~~~~~~~p~~~~~p~~~~l~~fq~lll~r~lrpdr~~~~~~~fi~~~lG~~~~~~~~~~l~~~~~~s~~~~P~i 1374 (1650)
..|+.| ++++|+|++..++ +||...++ ||++|++.. .+|+++||+|
T Consensus 2345 -------------------------~~~~~l--~~~~~~~~~~~~~-~~~~~~~~-----~~~~~l~~~-~~s~~~~Pli 2390 (2695)
T 4akg_A 2345 -------------------------NDLRYL--WDYVTTKSYISAL-NWFKNEFF-----VDEWNIADV-VANSDNNYFT 2390 (2695)
T ss_dssp -------------------------SHHHHH--HHHHHTTCHHHHH-HHHHHTTC-----CCCCCHHHH-HHHCCCSEEE
T ss_pred -------------------------HHHHHH--HHHhcccHHHHHH-HHHHhccC-----CCcccHHHH-HhcCCCCeEE
Confidence 234443 7888888876554 57765443 577999885 4678899999
Q ss_pred EEcCCCcChHHHHHHHHHhcccCCCeeeccCcch
Q psy4724 1375 FILSAGSDPMDLLLKFNSDMNAAKPLTVSLGQGI 1408 (1650)
Q Consensus 1375 fils~g~DP~~~l~~~a~~~~~~~~~~islGqgq 1408 (1650)
||||||+||+..|.+||++++ .++++|||||||
T Consensus 2391 filspG~DP~~~l~~la~~~~-~~~~~iSlGqgq 2423 (2695)
T 4akg_A 2391 MASERDVDGTFKLIELAKASK-ESLKIIPLGSIE 2423 (2695)
T ss_dssp EEECTTCCTHHHHHHHHHTTT-CCCCEEECCSHH
T ss_pred eeCCCCCCchHHHHHHHHHhC-CCcEEEecCCCc
Confidence 999999999999999999986 489999999997
No 3
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=100.00 E-value=3.1e-55 Score=622.87 Aligned_cols=620 Identities=20% Similarity=0.296 Sum_probs=392.6
Q ss_pred HhcCCCCceEEEecCCchhhhHHHHH--------HHhcCCceEEEEEcccCCcchhHHHH-------HHHHHHhccCCCC
Q psy4724 70 ILQQPKGHAMLITIGGSGAAEVTKLA--------TFMNEYVLFEIEILKTYGLTDWRDDL-------CRLMKKSGGKDAK 134 (1650)
Q Consensus 70 il~~p~G~alLvGvgGSGrqSLtrLA--------afi~~~~~fqIeitk~Yg~~~f~eDL-------k~l~~~~g~~~~k 134 (1650)
|+...+---|+|=+-|-|..=+.+.- .|.....+-++|.+-.||.+-+.||+ ..++.+..+..|+
T Consensus 2179 iv~~~~R~PLlIDPq~Qa~~WIk~~~~~~~l~v~~~~d~~f~~~LE~ai~fG~pvLienvE~lDP~L~pvL~k~~~k~gg 2258 (3245)
T 3vkg_A 2179 MLKRFNRYPLVIDPSGQAMEFLMNQYADKKITKTSFLDSSFMKNLESALRFGCPLLVQDVENIDPVLNPVLNKEIRKKGG 2258 (3245)
T ss_dssp HTTSCSSCEEEECTTSHHHHHHHHHTGGGCCCCCCC-----HHHHHHHHHHTCCEECCCCC-------------------
T ss_pred HHhcCCCceEEEChHHHHHHHHHHHhccCCceEeecCchhHHHHHHHHHHcCCeEEEccccccchhHHHHHHHHHHhcCc
Confidence 34445556799999887655443321 12222334455566667776665553 3677777766677
Q ss_pred CEEEEEecCCcCchhhHHHHHHHHhhhh--hccccccccccCCCC---CccchhhhhhhhcCcchHHhhhchhHHHHHHH
Q psy4724 135 PMTFLFSDTQIQNEVFVEHINMLLNTAR--KRYNMDLTKSYGVCP---SMSIVHHLEDLNASPLVYDEIDNLDLLTEKIN 209 (1650)
Q Consensus 135 ~~vFl~tD~qI~~E~fLedIN~lL~tge--~~~~~~vp~l~~~v~---~l~~~~~Le~~~~~~~v~~E~~~~~~l~e~~~ 209 (1650)
+.++-++|+.| .|.+++..+|+|.. ||| .|++++++. +..+.+|||+|+++.+|..|+ |+++++..
T Consensus 2259 ~~~I~lGdk~i---dy~~~FrlyltTkl~np~y---~Pev~~kvtlINFtvT~~GLedQLL~~vv~~Er---PeLE~~r~ 2329 (3245)
T 3vkg_A 2259 RILIRLGDQDV---DFSPSFMIFLFTRDPTAHF---TPDLCSRVTFVNFTVTPSSLQSQCLHEALKTER---PDTHKKRS 2329 (3245)
T ss_dssp ------------------CCCEEEEECCTTCCC---CHHHHHTSEEEECCCCHHHHHHHHHHHHHHHHC---HHHHHHHH
T ss_pred eEEEEECCeeE---ecCCCceEEEEecCCCCCC---CHHHHhheEEEEEEecHHHHHHHHHHHHHHHhC---ccHHHHHH
Confidence 88889999999 58899999999995 999 999998866 557899999999999999999 99999999
Q ss_pred HHHHhhhhccCC-CCccchhHhHHHHHHHHHHHHhcCCccchhhH-----HHhhHHHHHHhhhccchhh-hcccchhhhh
Q psy4724 210 QYIVDYNTQNSN-KPIDIVTFLYIIQHISRLCRILQQPKGHAMLI-----TIGTYRVERKIALGRVHII-RTEKEIDDAR 282 (1650)
Q Consensus 210 ~~~~~~~~~~~~-~~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~i~~~f~~~~~~l~~lhiv-lt~s~I~~~R 282 (1650)
.++...+..+.. +.+| ++++..|....|++... ++............++... .|+.+|+++|
T Consensus 2330 ~Li~~~~~~k~~L~~LE-----------d~lL~~Ls~s~GniLdd~~LI~~L~~sK~~s~eI~~kl~~a~~te~~I~~~R 2398 (3245)
T 3vkg_A 2330 DLLKIQGEFQVKLRILE-----------KSLLNALSQASGNILDDDSVISTLETLKKETTEIALKVEETETVMQEISEVS 2398 (3245)
T ss_dssp HHHHTTHHHHHHHHTTT-----------HHHHHHHHTTSSCGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-----------HHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 988543322211 2333 36777888888876421 1211111111111333333 7889999999
Q ss_pred hcccccccccceeEeeeccccCCCchhHHHHHHHHHHHHHhhcCCCCc---HHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q psy4724 283 MMYIPVSKHSSVLFFCCAELSNIDPMYQYSLNWFINLYVQSIEGSEKT---DQLDKRLKILMNHFTYSIYKNICRSLFED 359 (1650)
Q Consensus 283 ~~y~PvA~r~S~Ly~~~~~Ls~id~mYqfSl~~F~~lf~~~l~~s~~~---~~l~~Rl~~l~~~lt~~vy~~v~r~Lfe~ 359 (1650)
+.|+|||.|||.||||+++|+.|| ||||||.||+.+|..+|.++.+. +.+.+|+.++++++|+.+|.++|||||++
T Consensus 2399 ~~YrpvA~r~s~LyF~i~dL~~i~-mYQfSL~~F~~lF~~si~~s~~~~~~~~~~~Rl~~l~~~lt~~vy~~v~RgLFek 2477 (3245)
T 3vkg_A 2399 ALYNPMALSCSRVYFAMEELSQFH-LYQFSLRAFLDIFYNLLNNNPNLVDKKDPNERLVYLSKDIFSMTFNRVTRTLLND 2477 (3245)
T ss_dssp HHSHHHHHHHHHHHHHHTGGGGST-TCCCCHHHHHHHHHHHHSSCGGGSSCCCHHHHHHHHHHHHHHHHHHHHTTTSCGG
T ss_pred HHhHHHHHHHHHHHHHHHHHhcCC-eeeCCHHHHHHHHHHHHHhCccccccccHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 999999999999999999999999 99999999999999999988776 77999999999999999999999999999
Q ss_pred hhHHHHHHhhh-ch----hhhhHhhHHHHhhhcchhhhhhc--hhhhHHHHHHHHHhhhhcCCCCchHHHHHHhccCCCC
Q psy4724 360 HKLVFSFVLCT-GQ----GEIAKSYIDEGLKKGLWIVLQNC--HVAKSWMKELERICAEVIVPANTHQEFRLWLTSYPST 432 (1650)
Q Consensus 360 ~kllfs~lL~~-~~----~~~a~~~i~~~~~~~~w~~l~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~f~~~l~~~~~~ 432 (1650)
||++|++++|. .+ +.+...++...++++.-...... ..... +.++.-|.++.....
T Consensus 2478 dKLlFs~~l~~~~i~~~~~~i~~~E~~flL~g~~~~~~~~~~~~~~~~----------------wl~~~~w~~i~~L~~- 2540 (3245)
T 3vkg_A 2478 DKLTFALQLTIISVKGTSNEIEESEWDFLLKGGDNLTSIKETIPQLDS----------------LLSTTQQKWLICLRQ- 2540 (3245)
T ss_dssp GTTHHHHHHHHHHTTTSTTCCCHHHHHHHHHTTTTGGGCCCCCGGGTT----------------TCCHHHHHHHHHHHH-
T ss_pred hHHHHHHHHHHHHHHhccCCCCHHHHHHHhcCCccccccccccCCccc----------------cCCHHHHHHHHHHHh-
Confidence 99999999994 22 22344445444444321100000 00001 112211111111100
Q ss_pred CCCchhhccchhhhccCchhhHHHHhhhhcCCCCCCcccccc---------ccchhHHHHHHHHHhhHHH-HHHHHHHhC
Q psy4724 433 TFPVSVLENGIKMIIEPPKGIKNNLLRSYTNDPINSDDFYND---------SKNVAAWHKLLFSLCLFHA-VVQERKQYG 502 (1650)
Q Consensus 433 ~~p~~~le~~lk~l~e~~~~~k~~ll~~~~~d~~~~~~~~~~---------~~~~~~f~kLL~~l~~~~~-~~~~r~~~~ 502 (1650)
..| .+-.. ...+...+..|+ .+..+..++.......|+. ....+.|++++...|++.+ +..+...|+
T Consensus 2541 ~l~-~F~~l-~~~~~~~~~~W~-~~~~s~~pe~~~pp~~w~~~~~~~~~~~~~~l~~fqkLlllr~lRpDr~~~a~~~fV 2617 (3245)
T 3vkg_A 2541 QVP-SFSKL-VDHIQQNSSDWK-QFFGKDQVGEPIIPESWIVAQAQLSNQQSTIVSNFRKILLMKAFHSDRVLQYSHSFV 2617 (3245)
T ss_dssp HCG-GGTTH-HHHHHHTHHHHH-HHTCSSCSSCCCCCTTHHHHHHHHSSCCCHHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred hCh-hhhhH-HHHHHhCHHHHH-HHhcccCcccccCccccccccccccccccchhhHHHHHHHHHHhCccHHHHHHHHHH
Confidence 000 00000 000011112233 2322222111100011110 1225789999999998754 444445555
Q ss_pred CCCCCCCcccccchhHHHHHHHHHHHh--ccCCCChhhhhhhhhh------HH-HhhhhccCCccccccccchH--HHHH
Q psy4724 503 PLGWNIPYEFNLSDLNISMKQLQMFLN--DYTTIPFDALIYLTVD------YK-YTSQMRQKNPFTLTISRTTQ--IIED 571 (1650)
Q Consensus 503 ~~~~~~~~~~~l~~l~~~~~~l~~~~~--~~~~ip~~~l~~l~~~------l~-~~~~~~~~~~~~~~i~~g~~--~~e~ 571 (1650)
...++..|..+.. ..+....+ ..+.+|+ ++.++|+ +. .+.+++ .....+++|+|+. .+++
T Consensus 2618 ~~~lG~~fv~~~~------~dl~~~~~~es~~~tPl--ifilSpG~DP~~~l~~lA~~~~-~~~~~iSLGqgQg~~~A~~ 2688 (3245)
T 3vkg_A 2618 CSVFGEDFLNTQE------LDMANIVEKEVKSSSPL--LLCSVPGYDASSKVDDLALQLH-KQYKSFAIGSPEGFELAEK 2688 (3245)
T ss_dssp HHHSCTTTTCC--------CCHHHHHHHSSCTTSCE--ECEECTTCCCHHHHHHHHHHHT-CCCCCCBTTSHHHHHHHHH
T ss_pred HHHcCCccCCCCC------CCHHHHHhccCCCCccE--EEEeCCCCChHHHHHHHHHHhC-CCcEEEECCCCccHHHHHH
Confidence 4444444432211 11222222 2233443 2234443 22 222222 2333556666654 3444
Q ss_pred -HHHHHHhcceehhccchhhHHHHHHHHHHHHHhcCCCCcchHHHhhhhcCCCCCcccccccchhhhhhcCCcccccccc
Q psy4724 572 -FMLCIKKGLWIVLQNCHVAKSWMKELERICAEVIVPANTHQEFRLWLTSYPSTTFPVSVLENGIKMIIEPPKGIKNNLF 650 (1650)
Q Consensus 572 -l~~~i~~g~wvllqn~~la~~~~~e~e~~l~~~~~p~~~~a~~~Lw~t~~~~~~~pi~~l~~~vk~v~E~~~glk~~l~ 650 (1650)
+..|+++|+||+|||||++.+|++++|+.++.. ..|++||||+|++|++.||+.+|++|+|+|+|||.|+|+|+.
T Consensus 2689 ~i~~a~~~G~WV~LqNcHL~~sWl~~LEk~le~~----~~h~~FRLwLTsep~~~fP~~iLq~siKit~EpP~GlkaNl~ 2764 (3245)
T 3vkg_A 2689 SIYAAAKSGTWVLLKNIHLAPQWLVQLEKKLHSL----SPHPSFRLFMTSEIHPALPANLLRMSNVFSYENPPGVKANLL 2764 (3245)
T ss_dssp HHHHHHHHTCEEECBCGGGCTTTHHHHHHHHHTC----CCCTTCEEECCEESCTTSCHHHHHTSEECCBCCCSSHHHHHH
T ss_pred HHHHHHHcCCEEEEechhhhHhHHHHHHHHHHcc----CCCCCeeEEEEecCCCCCCHHHHHhhhHheeCCChhHHHHHH
Confidence 456899999999999999999999999988754 249999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCcchHhhhhhhhhhHHHHHHHhhhhHHHHHHHhhCCCCCCCCccCCcccHHHHHHHHHhhhcCC-------
Q psy4724 651 RSYTNDPINSDDFYNDSKNVAAWHKLLFSLCLFHAVVQERKQYGPLGWNIPYEFNLSDLNISMKQLQMFLNDY------- 723 (1650)
Q Consensus 651 ~~~~~~~~~~~~~w~~~k~~l~~~~~l~~L~~fHavv~ER~kf~~lG~ni~y~Fn~sDl~~~~~~l~~~l~~~------- 723 (1650)
++|...+ .+.. +++...+.+++|.||||||||||||||||+|||++|+||++||++++..|+.|+++.
T Consensus 2765 rs~~~~~---~~~~--~~~~~~~~~llf~L~fFHAvvqERrkfgplGWn~~YeFn~sDl~~s~~~l~~~l~~~~~~~~n~ 2839 (3245)
T 3vkg_A 2765 HTFIGIP---ATRM--DKQPAERSRIYFLLAWFHAIIQERLRYIPLGWTKFFEFNDADLRGALDSIDYWVDLYSKGRSNI 2839 (3245)
T ss_dssp HHHTTSC---HHHH--TSSSTHHHHHHHHHHHHHHHHHHGGGGTTTSCSSCCCCCHHHHHHHHHHHHHHHHHHSTTCSCC
T ss_pred HHHHhCC---HHHh--ccCcHHHHHHHHHHHHHHHHHHHHHHhCccccCcccccchHHHHHHHHHHHHHHHHhccccccc
Confidence 9996532 2222 223445678999999999999999999999999999999999999999999999753
Q ss_pred --CCCchhhHhHhhcCccchhhHHHHH
Q psy4724 724 --TTIPFDALIYLTASIPFQVLAMEVY 748 (1650)
Q Consensus 724 --~~~p~~~l~~~~~s~a~Wv~A~~~Y 748 (1650)
+.+||++++|+.+++.+..+--..+
T Consensus 2840 ~~~~iPw~~L~yl~gei~YGGrVtDd~ 2866 (3245)
T 3vkg_A 2840 DPDKIPWIAVRTILGSTIYGGRIDNEF 2866 (3245)
T ss_dssp CTTTSCHHHHHHCCCCCCCSTTCCSSS
T ss_pred CCCCCCHHHHHHHHhhcccCCccCCHH
Confidence 5789999999999999665544433
No 4
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=100.00 E-value=1.3e-53 Score=607.33 Aligned_cols=555 Identities=15% Similarity=0.200 Sum_probs=378.2
Q ss_pred CCceEEEecCCchhhhHHHHHH-------HhcCCceEEEEEcccCCcchhHHH-------HHHHHHHhccCCCCCEEEEE
Q psy4724 75 KGHAMLITIGGSGAAEVTKLAT-------FMNEYVLFEIEILKTYGLTDWRDD-------LCRLMKKSGGKDAKPMTFLF 140 (1650)
Q Consensus 75 ~G~alLvGvgGSGrqSLtrLAa-------fi~~~~~fqIeitk~Yg~~~f~eD-------Lk~l~~~~g~~~~k~~vFl~ 140 (1650)
+---|+|=+-|-|..=+-+... +.....+-++|.+..||.+-+.|| |..++.+....+|+..++-+
T Consensus 2005 ~r~PL~IDPq~qa~~wik~~~~~~l~v~~~~d~~f~~~lE~ai~~G~pvLien~E~lDp~L~pvL~k~~~k~gg~~~i~l 2084 (2695)
T 4akg_A 2005 DAVPFLLDPSSHMITVISNYYGNKTVLLSFLEEGFVKRLENAIRFGSVVIIQDGEFFDPIISRLISREFNHAGNRVTVEI 2084 (2695)
T ss_dssp SSEEEEECSSTTHHHHHHHHHGGGEEEECTTSSTHHHHHHHHHHTTCEEEESCSSSCCSTTHHHHTTCCEECSSCEEEEC
T ss_pred ccCceEECcHHHHHHHHHHHhcCCceEeeCCcHHHHHHHHHHHHcCCeEEEccccccchhHHHHHhhHhhhcCCeEEEEE
Confidence 3345899999988766555310 001111222333334555555555 34788888767788899999
Q ss_pred ecCCcCchhhHHHHHHHHhhhh--hccccccccccCCCC---CccchhhhhhhhcCcchHHhhhchhHHHHHHHHHHHhh
Q psy4724 141 SDTQIQNEVFVEHINMLLNTAR--KRYNMDLTKSYGVCP---SMSIVHHLEDLNASPLVYDEIDNLDLLTEKINQYIVDY 215 (1650)
Q Consensus 141 tD~qI~~E~fLedIN~lL~tge--~~~~~~vp~l~~~v~---~l~~~~~Le~~~~~~~v~~E~~~~~~l~e~~~~~~~~~ 215 (1650)
+|+.| .|.+++..+|+|.. ||| .|++++++. ++.+.+|||+|+++.+|..|+ |+++++...++...
T Consensus 2085 Gdk~i---dy~~~FrlyltTkl~np~y---~Pei~~~vt~iNFtvT~~GLedQLL~~vv~~Er---PdLE~~r~~Li~~~ 2155 (2695)
T 4akg_A 2085 GDHEV---DVSGDFKLFIHSCDPSGDI---PIFLRSRVRLVHFVTNKESIETRIFDITLTEEN---AEMQRKREDLIKLN 2155 (2695)
T ss_dssp SSSEE---ECCSSCEEEEEECCTTCCC---CHHHHHHEEEEECCCCSHHHHHHHHHHHHHHHC---HHHHHHHHHHHHHH
T ss_pred CCeeE---ecCCCceEEEeeCCCCCCC---CHHHHhheeEEEEEEcHHHHHHHHHHHHHHHhC---hhHHHHHHHHHHHH
Confidence 99999 58888999999985 999 999988865 557899999999999999999 99999999988653
Q ss_pred hhccCC-CCccchhHhHHHHHHHHHHHHhcCCccchhhH-----HHhhHHHHHHhhhccchhh-hcccchhhhhhccccc
Q psy4724 216 NTQNSN-KPIDIVTFLYIIQHISRLCRILQQPKGHAMLI-----TIGTYRVERKIALGRVHII-RTEKEIDDARMMYIPV 288 (1650)
Q Consensus 216 ~~~~~~-~~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~i~~~f~~~~~~l~~lhiv-lt~s~I~~~R~~y~Pv 288 (1650)
+..+.. +++| +++++.|..+.|++... ++..........-.++... .|+.+|+++|+.|+||
T Consensus 2156 ~~~k~~Lk~lE-----------d~lL~~Ls~s~GniLdd~~lI~~L~~sK~~a~eI~~kl~~a~~t~~~I~~~R~~Yrpv 2224 (2695)
T 4akg_A 2156 TEYKLKLKNLE-----------KRLLEELNNSQGNMLENDELMVTLNNLKKEAMNIEKKLSESEEFFPQFDNLVEEYSII 2224 (2695)
T ss_dssp HHHHHHHHHHH-----------HHHHHHHHHSSSSCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-----------HHHHHHHhhCCCCccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 332211 1111 46677787778876421 1211111111111334333 7889999999999999
Q ss_pred ccccceeEeeeccccCCCchhHHHHHHHHHHHHHhh-cCCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHH
Q psy4724 289 SKHSSVLFFCCAELSNIDPMYQYSLNWFINLYVQSI-EGSEKTDQLDKRLKILMNHFTYSIYKNICRSLFEDHKLVFSFV 367 (1650)
Q Consensus 289 A~r~S~Ly~~~~~Ls~id~mYqfSl~~F~~lf~~~l-~~s~~~~~l~~Rl~~l~~~lt~~vy~~v~r~Lfe~~kllfs~l 367 (1650)
|.|||.||||+++|+.|||||||||.||+.+|..+| .++.+.+.+.+|+.++++++|+.+|.++|||||++||++|+++
T Consensus 2225 A~r~s~LyF~i~dL~~i~~mYq~SL~~F~~lF~~~i~~~s~~~~~~~~R~~~l~~~~t~~vy~~v~r~Lfe~dkl~fs~~ 2304 (2695)
T 4akg_A 2225 GKHSVKIFSMLEKFGQFHWFYGISIGQFLSCFKRVFIKKSRETRAARTRVDEILWLLYQEVYCQFSTALDKKFKMIMAMT 2304 (2695)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHTTC----------CHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCchhhCCHHHHHHHHHHHHHhhCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 999999999999999999999999999999999999 8899999999999999999999999999999999999999999
Q ss_pred hhhchhhhhHhhHHHHhhhcchhhhhhchhhhHHHHHHHHHhhhhcCCCCchHHHHHHhccCCCCCCCchhhccchhhhc
Q psy4724 368 LCTGQGEIAKSYIDEGLKKGLWIVLQNCHVAKSWMKELERICAEVIVPANTHQEFRLWLTSYPSTTFPVSVLENGIKMII 447 (1650)
Q Consensus 368 L~~~~~~~a~~~i~~~~~~~~w~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~f~~~l~~~~~~~~p~~~le~~lk~l~ 447 (1650)
||.++...... .... .| +...+... ... . ..| .+.. .
T Consensus 2305 l~~~i~~~~~~-~~~~----e~-----------~~~~l~~~----~~~-~---------------~~~-~~~~------~ 2341 (2695)
T 4akg_A 2305 MFCLYKFDIES-EQYK----EA-----------VLTMIGVL----SES-S---------------DGV-PKLT------V 2341 (2695)
T ss_dssp HHHHHHHHHSC-HHHH----HH-----------HHHHHHHH----SSS-C---------------CCC-CCCC------T
T ss_pred HHHHHHhhcCC-CchH----HH-----------HHHHHhcc----ccC-C---------------CCc-cccc------c
Confidence 99876432110 0000 00 00000000 000 0 001 0000 0
Q ss_pred cCchhhHHHHhhhhcCCCCCCccccccccchhHHHHHHHHHhhHHHHHHHHHHhCCCCCCCCcccccchhHHHHHHHHHH
Q psy4724 448 EPPKGIKNNLLRSYTNDPINSDDFYNDSKNVAAWHKLLFSLCLFHAVVQERKQYGPLGWNIPYEFNLSDLNISMKQLQMF 527 (1650)
Q Consensus 448 e~~~~~k~~ll~~~~~d~~~~~~~~~~~~~~~~f~kLL~~l~~~~~~~~~r~~~~~~~~~~~~~~~l~~l~~~~~~l~~~ 527 (1650)
..+..|+ .+++..+.+ .|.++.. .+. ....+. .+.++. .
T Consensus 2342 ~~~~~~~-~l~~~~~~~---------------~~~~~~~------~~~---~~~~~~------~~~l~~----------~ 2380 (2695)
T 4akg_A 2342 DTNNDLR-YLWDYVTTK---------------SYISALN------WFK---NEFFVD------EWNIAD----------V 2380 (2695)
T ss_dssp TTCSHHH-HHHHHHHTT---------------CHHHHHH------HHH---HTTCCC------CCCHHH----------H
T ss_pred cchHHHH-HHHHHhccc---------------HHHHHHH------HHH---hccCCC------cccHHH----------H
Confidence 1112333 333333211 1111111 000 111111 122111 1
Q ss_pred HhccCCCChhhhhhhhhh------HHHhhhhccCCccccccccchH--HHHH-HHHHHHhcceehhccchhhHHHHHHH-
Q psy4724 528 LNDYTTIPFDALIYLTVD------YKYTSQMRQKNPFTLTISRTTQ--IIED-FMLCIKKGLWIVLQNCHVAKSWMKEL- 597 (1650)
Q Consensus 528 ~~~~~~ip~~~l~~l~~~------l~~~~~~~~~~~~~~~i~~g~~--~~e~-l~~~i~~g~wvllqn~~la~~~~~e~- 597 (1650)
.+....+|+ ++.++|+ +...++........+++|+|++ .+++ +..++++|+||+|||||++.+|++++
T Consensus 2381 ~~s~~~~Pl--ifilspG~DP~~~l~~la~~~~~~~~~iSlGqgq~~~~A~~~i~~a~~~G~Wv~LqN~HL~~swl~~Ll 2458 (2695)
T 4akg_A 2381 VANSDNNYF--TMASERDVDGTFKLIELAKASKESLKIIPLGSIENLNYAQEEISKSKIEGGWILLQNIQMSLSWVKTYL 2458 (2695)
T ss_dssp HHHCCCSEE--EEEECTTCCTHHHHHHHHHTTTCCCCEEECCSHHHHHHHHHHHHHHHHHTCCEEEETGGGGHHHHHHTH
T ss_pred HhcCCCCeE--EeeCCCCCCchHHHHHHHHHhCCCcEEEecCCCccHHHHHHHHHHHHHcCCeEEeecccccHHHHHHHH
Confidence 222233443 2233443 2222221122333556777764 2444 45689999999999999999999999
Q ss_pred HHHHHHhcCCCCcchHHHhhhhcC-CCCCcccccccchhhhhhcCCccccccccccccCCCCCCcchHhhhhhhhhhHHH
Q psy4724 598 ERICAEVIVPANTHQEFRLWLTSY-PSTTFPVSVLENGIKMIIEPPKGIKNNLFRSYTNDPINSDDFYNDSKNVAAWHKL 676 (1650)
Q Consensus 598 e~~l~~~~~p~~~~a~~~Lw~t~~-~~~~~pi~~l~~~vk~v~E~~~glk~~l~~~~~~~~~~~~~~w~~~k~~l~~~~~ 676 (1650)
|+.++... +...|++||||+|++ |++.||+.+||+|+|+|+|||.|+|+|+.++|.. +.+..+.+...|.++
T Consensus 2459 ek~~e~~~-~~~~h~~FRLwlts~~~~~~fP~~iLq~s~K~t~EpP~Glkanl~r~~~~------~~~~~~~~~~~~~~l 2531 (2695)
T 4akg_A 2459 HKHVEETK-AAEEHEKFKMFMTCHLTGDKLPAPLLQRTDRFVYEDIPGILDTVKDLWGS------QFFTGKISGVWSVYC 2531 (2695)
T ss_dssp HHHHHHCS-STTTSCSCCEEEECCSSSCCCCHHHHHHSEEEEECCCCCHHHHHHHHHHH------GGGGCCSSCHHHHHH
T ss_pred HHHHhccc-ccCCCCCceEEEeccCCcCcCCHHHHhccceeeecCChhHHHHHHHHhhh------HHHhhccccHHHHHH
Confidence 88887633 556799999999999 9999999999999999999999999999999942 345555566678999
Q ss_pred HHHHhhhhHHHHHHHhhCCCCCCCCccCCcccHHHHHHHHHhhhcCC--CCCchhhHhHhhcCccchh
Q psy4724 677 LFSLCLFHAVVQERKQYGPLGWNIPYEFNLSDLNISMKQLQMFLNDY--TTIPFDALIYLTASIPFQV 742 (1650)
Q Consensus 677 l~~L~~fHavv~ER~kf~~lG~ni~y~Fn~sDl~~~~~~l~~~l~~~--~~~p~~~l~~~~~s~a~Wv 742 (1650)
+|.||||||||||||||||+|||++|+||++||++++..|+.|+++. +.+||++++|+.+++.+..
T Consensus 2532 lf~L~~fHavv~ERrkfgplGWn~~YeFn~sDl~~s~~~l~~~l~~~~~~~ipw~~l~yl~ge~~YGG 2599 (2695)
T 4akg_A 2532 TFLLSWFHALITARTRLVPHGFSKKYYFNDCDFQFASVYLENVLATNSTNNIPWAQVRDHIATIVYGG 2599 (2695)
T ss_dssp HHHHHHHHHHHHHHHHSTTTTSSSCCCCCHHHHHHHHHHHHHHHHHSCSCSGGGHHHHHHHHHTTSTT
T ss_pred HHHHHHHHHHHHHHHHhCccccCcCCCCCHhHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhcCC
Confidence 99999999999999999999999999999999999999999999875 7799999999999998443
No 5
>2rr7_A Dynein heavy chain 9; microtubule-binding, stalk head, MTBD, antiparallel coil, motor protein, DSH; NMR {Chlamydomonas reinhardtii}
Probab=99.49 E-value=4.7e-16 Score=162.22 Aligned_cols=141 Identities=28% Similarity=0.335 Sum_probs=117.3
Q ss_pred HHHHHHHhcCCCCcchHHHhhhhcCCCCCcccccc---cchhhhhhc---CCccccccccccccCCC-CCCcchHhhhhh
Q psy4724 597 LERICAEVIVPANTHQEFRLWLTSYPSTTFPVSVL---ENGIKMIIE---PPKGIKNNLFRSYTNDP-INSDDFYNDSKN 669 (1650)
Q Consensus 597 ~e~~l~~~~~p~~~~a~~~Lw~t~~~~~~~pi~~l---~~~vk~v~E---~~~glk~~l~~~~~~~~-~~~~~~w~~~k~ 669 (1650)
++++|++++ |++++|..+| .++.++++.+|++| |.+|+.||| ++.|.++..... ..+ ...+++|..+++
T Consensus 2 ae~dL~~A~-PaL~~A~~al-~~l~k~di~Eiks~~~PP~~V~~vmeaV~iLl~~~~~~~~~--~~~g~~~~~~W~~~k~ 77 (155)
T 2rr7_A 2 SQADLAEAL-PLLEAALKAL-DTLKPADITEVKGMKSPPAGVRRVLEAICIMKGVKPARVKD--TASGRMVDDYWEASKK 77 (155)
T ss_dssp HHHHHHHHH-HHHHHHHHHH-HHSCHHHHHHHHHSSSCCTTHHHHHHHHHTTTTCCCCCEEC--TTTCSEECCHHHHHHH
T ss_pred HHHHHHHHH-HHHHHHHHHH-hCCCHHHHHHHHccCCCcHHHHHHHHHHHHHcCCCCcccCC--CccccccCCCHHHHHH
Confidence 688999999 9999999999 99999999999999 889999999 455544321000 000 012468999999
Q ss_pred hhhhHHHHHHHhhhhHHHHHHHhhCCCCCCCCccCCcccHHHHHHHHHhhhcCCCCCchhhHhHhhcCcc-----chhhH
Q psy4724 670 VAAWHKLLFSLCLFHAVVQERKQYGPLGWNIPYEFNLSDLNISMKQLQMFLNDYTTIPFDALIYLTASIP-----FQVLA 744 (1650)
Q Consensus 670 ~l~~~~~l~~L~~fHavv~ER~kf~~lG~ni~y~Fn~sDl~~~~~~l~~~l~~~~~~p~~~l~~~~~s~a-----~Wv~A 744 (1650)
+|++.+|+..|.. ||+ ++|+.+ .++.|+.|+.+++|+|. .+..+|.| .||+|
T Consensus 78 ~l~~~~Fl~~L~~----------fdk--d~I~~~--------~~~~l~~yl~~p~f~~e---~v~~~S~Aa~~Lc~WV~A 134 (155)
T 2rr7_A 78 MLMEFDFLDSLRK----------FDK--DHIPPE--------VIVKIRPFAQDPEFQPK---VIEKQSVACAGLCSWVIA 134 (155)
T ss_dssp HHSCSSHHHHHHH----------SCG--GGCCHH--------HHTTSTTTSSCTTSSHH---HHHHHCTTTHHHHHHHHH
T ss_pred HhchHHHHHHHHh----------cCc--ccChHH--------HHHHHHHHhcCCCCCHH---HHHHHHHHHHHHHHHHHH
Confidence 9999999999999 999 999999 99999999999999998 55555555 99999
Q ss_pred HHHHHHHHHhcchHHHHHHH
Q psy4724 745 MEVYDRVIKIVGPKKAKLAE 764 (1650)
Q Consensus 745 ~~~Y~~v~~~v~P~~~~l~~ 764 (1650)
|+.|++|+++|+||+++|++
T Consensus 135 ~~~y~~v~k~V~Pkr~~l~~ 154 (155)
T 2rr7_A 135 LEKYDKVIKEVEPKRQKLRE 154 (155)
T ss_dssp HHHHHHHTTSSSCCCSSSSC
T ss_pred HHHHHHHHHHHhhHHHHHhh
Confidence 99999999999999987754
No 6
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A
Probab=99.37 E-value=2.1e-13 Score=169.22 Aligned_cols=158 Identities=14% Similarity=0.128 Sum_probs=135.3
Q ss_pred hhhHHHHHHHHHHHHHhcCCCCcchHHHhhhhcCCCCCcccccc---cchhhhhhcCCccccccccccccCCCCCCcchH
Q psy4724 588 HVAKSWMKELERICAEVIVPANTHQEFRLWLTSYPSTTFPVSVL---ENGIKMIIEPPKGIKNNLFRSYTNDPINSDDFY 664 (1650)
Q Consensus 588 ~la~~~~~e~e~~l~~~~~p~~~~a~~~Lw~t~~~~~~~pi~~l---~~~vk~v~E~~~glk~~l~~~~~~~~~~~~~~w 664 (1650)
..+.....+++++|+++. |++.+|..+| .++++.++.+|++| |.+|+.|||..+-+... .+++|
T Consensus 42 ~~i~~~k~~~e~dLa~A~-PaL~~A~~AL-~~L~k~di~Elks~~~PP~~V~~vmeaV~iLl~~-----------~~~~W 108 (536)
T 3err_A 42 EVIADKQMSVKEDLDKVE-PAVIEAQNAV-KSIKKQHLVEVRSMANPPAAVKLALESIALLLGE-----------STTDW 108 (536)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHHHHHH-HTCCHHHHHHHHTCSSCCHHHHHHHHHHHHHTTC-----------SCCCH
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHH-hcCCHHHHHHHHhcCCCcHHHHHHHHHHHHHhCC-----------CCCCH
Confidence 355667889999999999 9999999999 99999999999999 88999999944333211 12469
Q ss_pred hhhhhhhhhHHHHHHHhhhhHHHHHHHhhCCCCCCCCccCCcccHHHHHHHHH-hhhcCCCCCchhhHhHhhcCcc----
Q psy4724 665 NDSKNVAAWHKLLFSLCLFHAVVQERKQYGPLGWNIPYEFNLSDLNISMKQLQ-MFLNDYTTIPFDALIYLTASIP---- 739 (1650)
Q Consensus 665 ~~~k~~l~~~~~l~~L~~fHavv~ER~kf~~lG~ni~y~Fn~sDl~~~~~~l~-~~l~~~~~~p~~~l~~~~~s~a---- 739 (1650)
..++++|++.+|+..|.. ||+ ++|+.+ ++++|+ .|+.+++|+|. .+..+|.|
T Consensus 109 ~~ak~~L~~~~Fl~~L~~----------fdk--d~I~~~--------~~~~l~~~y~~~p~F~~e---~v~~~S~Aa~~L 165 (536)
T 3err_A 109 KQIRSIIMRENFIPTIVN----------FSA--EEISDA--------IREKMKKNYMSNPSYNYE---IVNRASLAAGPM 165 (536)
T ss_dssp HHHTTGGGCTTHHHHHHH----------CCG--GGCCHH--------HHHHHHHHTTTSTTCSHH---HHHHHCTTHHHH
T ss_pred HHHhhccCcHHHHHHHHh----------cCc--ccCCHH--------HHHHHHHHhcCCCCCCHH---HHHHHHHHHHHH
Confidence 999999999999999999 999 999998 999997 79999999998 55555555
Q ss_pred -chhhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4724 740 -FQVLAMEVYDRVIKIVGPKKAKLAEAEADYAVQMEKLNSKRA 781 (1650)
Q Consensus 740 -~Wv~A~~~Y~~v~~~v~P~~~~l~~~e~~l~~~~~~L~~~~~ 781 (1650)
+||+||+.|+.+.++|+|++++++++++++.+++++|.....
T Consensus 166 c~WV~A~~~Y~~l~~eV~pLk~eLk~lE~eL~e~e~eL~~lll 208 (536)
T 3err_A 166 VKWAIAQLNYADMLKRVEPLRNELQKLEDDAKDNQQKLEALLL 208 (536)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhcchhHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999888888877765443
No 7
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.78 E-value=0.016 Score=66.56 Aligned_cols=90 Identities=10% Similarity=0.111 Sum_probs=66.4
Q ss_pred ceeehHHHHHHHHH----HHHHh----cCCCCceEEEecCCchhhhHHHHHHHhcCCceEEEEEcc---cCCcchhHHHH
Q psy4724 53 DIVTFLYIIQHISR----LCRIL----QQPKGHAMLITIGGSGAAEVTKLATFMNEYVLFEIEILK---TYGLTDWRDDL 121 (1650)
Q Consensus 53 ~lVlF~~ai~Hv~r----I~Ril----~~p~G~alLvGvgGSGrqSLtrLAafi~~~~~fqIeitk---~Yg~~~f~eDL 121 (1650)
.+|-+..+++++.. +.+.+ ..+.+++||.|..|+||.+|++..+...++.++.+..+. ++........+
T Consensus 34 ~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~~~~~~~~~~ 113 (272)
T 1d2n_A 34 GIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAKCQAM 113 (272)
T ss_dssp CCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHHHHHHH
T ss_pred CCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCCchHHHHHHH
Confidence 47778888888888 55555 567789999999999999999988888888888875442 23334455667
Q ss_pred HHHHHHhccCCCCCEEEEEecCC
Q psy4724 122 CRLMKKSGGKDAKPMTFLFSDTQ 144 (1650)
Q Consensus 122 k~l~~~~g~~~~k~~vFl~tD~q 144 (1650)
+.++..+. .+++.++++.|-+
T Consensus 114 ~~~~~~~~--~~~~~vl~iDEid 134 (272)
T 1d2n_A 114 KKIFDDAY--KSQLSCVVVDDIE 134 (272)
T ss_dssp HHHHHHHH--TSSEEEEEECCHH
T ss_pred HHHHHHHH--hcCCcEEEEEChh
Confidence 77777664 3556777777744
No 8
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=95.26 E-value=0.038 Score=58.95 Aligned_cols=106 Identities=8% Similarity=0.085 Sum_probs=67.7
Q ss_pred ceeehHHHHHHHHHHHHHhcCCCCceEEEecCCchhhhHHHHHHHh----------cCCceEEEEEcccC----CcchhH
Q psy4724 53 DIVTFLYIIQHISRLCRILQQPKGHAMLITIGGSGAAEVTKLATFM----------NEYVLFEIEILKTY----GLTDWR 118 (1650)
Q Consensus 53 ~lVlF~~ai~Hv~rI~Ril~~p~G~alLvGvgGSGrqSLtrLAafi----------~~~~~fqIeitk~Y----g~~~f~ 118 (1650)
++|--+++++.+.+..+ +...+|+||+|..|+||.+|++-.+.- .++.++.+....-. ...++.
T Consensus 23 ~~~g~~~~~~~l~~~l~--~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (195)
T 1jbk_A 23 PVIGRDEEIRRTIQVLQ--RRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFE 100 (195)
T ss_dssp CCCSCHHHHHHHHHHHT--SSSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHHTTTCSHHHHH
T ss_pred ccccchHHHHHHHHHHh--cCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHHHhccCCccccHH
Confidence 46666777666655432 244678999999999999998765544 36777777654321 123445
Q ss_pred HHHHHHHHHhccCCCCCEEEEEecCCcCc--------hhhHHHHHHHHhhh
Q psy4724 119 DDLCRLMKKSGGKDAKPMTFLFSDTQIQN--------EVFVEHINMLLNTA 161 (1650)
Q Consensus 119 eDLk~l~~~~g~~~~k~~vFl~tD~qI~~--------E~fLedIN~lL~tg 161 (1650)
..++.++.... ..++++++++.|-+-.. ..+...++.++..+
T Consensus 101 ~~~~~~~~~~~-~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~~ 150 (195)
T 1jbk_A 101 ERLKGVLNDLA-KQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARG 150 (195)
T ss_dssp HHHHHHHHHHH-HSTTTEEEEEETGGGGTT------CCCCHHHHHHHHHTT
T ss_pred HHHHHHHHHHh-hcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhccC
Confidence 55666666544 34678899999987652 34455666666554
No 9
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.09 E-value=0.069 Score=58.40 Aligned_cols=105 Identities=10% Similarity=0.080 Sum_probs=65.1
Q ss_pred ceeehHHHHHHHHHHHHHhcCC-CCceEEEecCCchhhhHHHHHHHhc-----CCceEEEEEcccCCcchhHHHHHHHHH
Q psy4724 53 DIVTFLYIIQHISRLCRILQQP-KGHAMLITIGGSGAAEVTKLATFMN-----EYVLFEIEILKTYGLTDWRDDLCRLMK 126 (1650)
Q Consensus 53 ~lVlF~~ai~Hv~rI~Ril~~p-~G~alLvGvgGSGrqSLtrLAafi~-----~~~~fqIeitk~Yg~~~f~eDLk~l~~ 126 (1650)
++|--+++++.+. +.+..+ .+|.+|.|..|+||.+|++..+.-. +..++.+..+...+....++.+.....
T Consensus 18 ~~~g~~~~~~~l~---~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (226)
T 2chg_A 18 EVVGQDEVIQRLK---GYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIKEFAR 94 (226)
T ss_dssp GCCSCHHHHHHHH---HHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTCHHHHHHHHHHHHT
T ss_pred HHcCcHHHHHHHH---HHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccChHHHHHHHHHHhc
Confidence 3444455554443 333333 4579999999999999987654421 233555555555566666666655444
Q ss_pred HhccCCCCCEEEEEecCCcCchhhHHHHHHHHhh
Q psy4724 127 KSGGKDAKPMTFLFSDTQIQNEVFVEHINMLLNT 160 (1650)
Q Consensus 127 ~~g~~~~k~~vFl~tD~qI~~E~fLedIN~lL~t 160 (1650)
..+...+++.++++.|-+-......+.+..++..
T Consensus 95 ~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~ 128 (226)
T 2chg_A 95 TAPIGGAPFKIIFLDEADALTADAQAALRRTMEM 128 (226)
T ss_dssp SCCSTTCSCEEEEEETGGGSCHHHHHHHHHHHHH
T ss_pred ccCCCccCceEEEEeChhhcCHHHHHHHHHHHHh
Confidence 3332246788999999888776666666666644
No 10
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=95.06 E-value=0.036 Score=58.87 Aligned_cols=106 Identities=9% Similarity=0.113 Sum_probs=66.4
Q ss_pred ceeehHHHHHHHHHHHHHhcCCCCceEEEecCCchhhhHHHHHHHhc----------CCceEEEEEcccC----CcchhH
Q psy4724 53 DIVTFLYIIQHISRLCRILQQPKGHAMLITIGGSGAAEVTKLATFMN----------EYVLFEIEILKTY----GLTDWR 118 (1650)
Q Consensus 53 ~lVlF~~ai~Hv~rI~Ril~~p~G~alLvGvgGSGrqSLtrLAafi~----------~~~~fqIeitk~Y----g~~~f~ 118 (1650)
++|--+.+++.+.+..+ +...+|+||+|..|+||.+|++..+.-. ++.++.+....-. ....+.
T Consensus 23 ~~~g~~~~~~~l~~~l~--~~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (187)
T 2p65_A 23 PVIGRDTEIRRAIQILS--RRTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDLSSLIAGAKYRGDFE 100 (187)
T ss_dssp CCCSCHHHHHHHHHHHT--SSSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECHHHHHHHCCSHHHHH
T ss_pred hhhcchHHHHHHHHHHh--CCCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEeHHHhhcCCCchhHHH
Confidence 45555666666554332 2456789999999999999987665443 6677776543211 223445
Q ss_pred HHHHHHHHHhccCCCCCEEEEEecCCcCc---------hhhHHHHHHHHhhh
Q psy4724 119 DDLCRLMKKSGGKDAKPMTFLFSDTQIQN---------EVFVEHINMLLNTA 161 (1650)
Q Consensus 119 eDLk~l~~~~g~~~~k~~vFl~tD~qI~~---------E~fLedIN~lL~tg 161 (1650)
..++.++..+. ..+++.++++.|-+-.. ..++..+..++..+
T Consensus 101 ~~~~~~~~~~~-~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~~l~~~~~~~ 151 (187)
T 2p65_A 101 ERLKSILKEVQ-DAEGQVVMFIDEIHTVVGAGAVAEGALDAGNILKPMLARG 151 (187)
T ss_dssp HHHHHHHHHHH-HTTTSEEEEETTGGGGSSSSSSCTTSCCTHHHHHHHHHTT
T ss_pred HHHHHHHHHHH-hcCCceEEEEeCHHHhcccccccccchHHHHHHHHHHhcC
Confidence 55666666555 34577888999877653 34555566665543
No 11
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=94.55 E-value=0.096 Score=59.28 Aligned_cols=70 Identities=13% Similarity=0.116 Sum_probs=48.7
Q ss_pred CCCceEEEecCCchhhhHHHHHHHhcCCceEEEEEccc---CCcchhHHHHHHHHHHhccCCCCCEEEEEecCCcC
Q psy4724 74 PKGHAMLITIGGSGAAEVTKLATFMNEYVLFEIEILKT---YGLTDWRDDLCRLMKKSGGKDAKPMTFLFSDTQIQ 146 (1650)
Q Consensus 74 p~G~alLvGvgGSGrqSLtrLAafi~~~~~fqIeitk~---Yg~~~f~eDLk~l~~~~g~~~~k~~vFl~tD~qI~ 146 (1650)
+..++||.|..|+||.+|+|..+.-.+..++.+..+.- |+ ..-...++.++..+. .+.+.+++|.|-+-.
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~--~~~~~vl~iDeid~l 110 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIG-GLGAARVRSLFKEAR--ARAPCIVYIDEIDAV 110 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSST-THHHHHHHHHHHHHH--HTCSEEEEEECC---
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhcc-ChhHHHHHHHHHHHH--hcCCeEEEEeCcchh
Confidence 34569999999999999999888888888888765421 22 122345667777665 346788888887754
No 12
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=93.86 E-value=0.16 Score=58.26 Aligned_cols=71 Identities=10% Similarity=0.137 Sum_probs=51.0
Q ss_pred CCCCceEEEecCCchhhhHHHHHHHhcCCceEEEEEcccCC--cchhHHHHHHHHHHhccCCCCCEEEEEecCCc
Q psy4724 73 QPKGHAMLITIGGSGAAEVTKLATFMNEYVLFEIEILKTYG--LTDWRDDLCRLMKKSGGKDAKPMTFLFSDTQI 145 (1650)
Q Consensus 73 ~p~G~alLvGvgGSGrqSLtrLAafi~~~~~fqIeitk~Yg--~~~f~eDLk~l~~~~g~~~~k~~vFl~tD~qI 145 (1650)
.+..++||.|..|+||.+|+|..+--.+..++.+..+.-++ ..+....++.++..+- .+.|.+++|.|-+-
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~vl~iDEid~ 121 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKKFIGEGASLVKDIFKLAK--EKAPSIIFIDEIDA 121 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGCCCSTTHHHHHHHHHHHHHH--HTCSEEEEEETTHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHHHhccchHHHHHHHHHHHHH--HcCCeEEEEECHHH
Confidence 45667999999999999999999988888888886543221 2233455666666554 35678888887654
No 13
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=93.03 E-value=0.15 Score=67.43 Aligned_cols=104 Identities=13% Similarity=0.173 Sum_probs=73.0
Q ss_pred eeehHHHHHHHHHHHHHhc-------CCCCceEEEecCCchhhhHHHHHHHhcCCceEEEEEcccCC---cch-------
Q psy4724 54 IVTFLYIIQHISRLCRILQ-------QPKGHAMLITIGGSGAAEVTKLATFMNEYVLFEIEILKTYG---LTD------- 116 (1650)
Q Consensus 54 lVlF~~ai~Hv~rI~Ril~-------~p~G~alLvGvgGSGrqSLtrLAafi~~~~~fqIeitk~Yg---~~~------- 116 (1650)
+|-.++|+++|.+..+..+ .|.||.||+|..|+||.+|+|..+...+..++.|..+.-.. ...
T Consensus 460 v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~~~~l~g~~~g 539 (758)
T 1r6b_X 460 VFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPG 539 (758)
T ss_dssp SCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCCSSSCCCCSC
T ss_pred ccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhhHhhhcCCCCC
Confidence 6667899999988877665 57899999999999999999988888888888887552111 111
Q ss_pred hH-HH----HHHHHHHhccCCCCCEEEEEecCCcCchhhHHHHHHHHhhhh
Q psy4724 117 WR-DD----LCRLMKKSGGKDAKPMTFLFSDTQIQNEVFVEHINMLLNTAR 162 (1650)
Q Consensus 117 f~-eD----Lk~l~~~~g~~~~k~~vFl~tD~qI~~E~fLedIN~lL~tge 162 (1650)
+. .+ +...+.+ ....|++|.|-+-.....+.-+..+|..|.
T Consensus 540 ~~g~~~~~~l~~~~~~-----~~~~vl~lDEi~~~~~~~~~~Ll~~le~~~ 585 (758)
T 1r6b_X 540 YVGFDQGGLLTDAVIK-----HPHAVLLLDEIEKAHPDVFNILLQVMDNGT 585 (758)
T ss_dssp SHHHHHTTHHHHHHHH-----CSSEEEEEETGGGSCHHHHHHHHHHHHHSE
T ss_pred CcCccccchHHHHHHh-----CCCcEEEEeCccccCHHHHHHHHHHhcCcE
Confidence 11 11 2222332 235788899887777777777777777764
No 14
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=92.88 E-value=0.19 Score=56.87 Aligned_cols=67 Identities=15% Similarity=0.217 Sum_probs=43.4
Q ss_pred CCCCceEEEecCCchhhhHHHHHHHhcCCceEEEEEcc--cCCcchhHHHHHHHHHHhccCCCCCEEEEEec
Q psy4724 73 QPKGHAMLITIGGSGAAEVTKLATFMNEYVLFEIEILK--TYGLTDWRDDLCRLMKKSGGKDAKPMTFLFSD 142 (1650)
Q Consensus 73 ~p~G~alLvGvgGSGrqSLtrLAafi~~~~~fqIeitk--~Yg~~~f~eDLk~l~~~~g~~~~k~~vFl~tD 142 (1650)
.|+| .||+|..|+||.+|+|..+...+..++.+..+. .....+....++.++..+. .+.|.++++.|
T Consensus 44 ~~~~-vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~~il~iDe 112 (257)
T 1lv7_A 44 IPKG-VLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAK--KAAPCIIFIDE 112 (257)
T ss_dssp CCCE-EEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTTSCCCCCHHHHHHHHHHHH--TTCSEEEEETT
T ss_pred CCCe-EEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHHHhhhhhHHHHHHHHHHHH--HcCCeeehhhh
Confidence 3444 999999999999999988888887776664321 1111223455667777664 34565555533
No 15
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=92.77 E-value=1.3 Score=40.93 Aligned_cols=91 Identities=14% Similarity=0.266 Sum_probs=72.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhchhhcc
Q psy4724 756 GPKKAKLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKL-ERAEKLIGGLGGEKTR 834 (1650)
Q Consensus 756 ~P~~~~l~~~e~~l~~~~~~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl-~ra~~Li~~L~~E~~r 834 (1650)
.|+...++.+..++..++.++.....++..+.+.+..-+..-..+..++..++.+++.+...| +-|.+++..=..++..
T Consensus 1 ~~~~~~~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~ 80 (97)
T 2eqb_B 1 GPLGSNYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYA 80 (97)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 377778888888888888888888889999999999999999999999999999999888877 7788888777666666
Q ss_pred HHHHHHHHHHHH
Q psy4724 835 WSEASANLSKAL 846 (1650)
Q Consensus 835 W~~~~~~~~~~~ 846 (1650)
-......+..++
T Consensus 81 ~e~kn~~L~~qL 92 (97)
T 2eqb_B 81 IEILNKRLTEQL 92 (97)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666666666654
No 16
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=92.20 E-value=0.3 Score=58.99 Aligned_cols=91 Identities=14% Similarity=0.166 Sum_probs=63.3
Q ss_pred ceeehHHHHHHHHHHHH----------HhcCCCCceEEEecCCchhhhHHHHHHHhcCCceEEEEEcccCC--cchhHHH
Q psy4724 53 DIVTFLYIIQHISRLCR----------ILQQPKGHAMLITIGGSGAAEVTKLATFMNEYVLFEIEILKTYG--LTDWRDD 120 (1650)
Q Consensus 53 ~lVlF~~ai~Hv~rI~R----------il~~p~G~alLvGvgGSGrqSLtrLAafi~~~~~fqIeitk~Yg--~~~f~eD 120 (1650)
++|--+.+++.|..+.. -++.|..|+||.|..|+||.+|+|..|--.+..++.+..+.-.+ ..+....
T Consensus 116 ~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~~~g~~~~~ 195 (389)
T 3vfd_A 116 DIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKL 195 (389)
T ss_dssp GSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC-------CHHH
T ss_pred HhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHhhccccchHHHH
Confidence 46666777777776652 24567789999999999999999999999999998886543221 1233455
Q ss_pred HHHHHHHhccCCCCCEEEEEecCCc
Q psy4724 121 LCRLMKKSGGKDAKPMTFLFSDTQI 145 (1650)
Q Consensus 121 Lk~l~~~~g~~~~k~~vFl~tD~qI 145 (1650)
++.++..+. ...+.+++|.|-+-
T Consensus 196 ~~~~~~~a~--~~~~~il~iDEid~ 218 (389)
T 3vfd_A 196 VRALFAVAR--ELQPSIIFIDQVDS 218 (389)
T ss_dssp HHHHHHHHH--HSSSEEEEEETGGG
T ss_pred HHHHHHHHH--hcCCeEEEEECchh
Confidence 666676664 34667777887653
No 17
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=92.09 E-value=0.5 Score=54.48 Aligned_cols=73 Identities=12% Similarity=0.175 Sum_probs=50.6
Q ss_pred hcCCCCceEEEecCCchhhhHHHHHHHhcCCceEEEEEcccCC--cchhHHHHHHHHHHhccCCCCCEEEEEecCCc
Q psy4724 71 LQQPKGHAMLITIGGSGAAEVTKLATFMNEYVLFEIEILKTYG--LTDWRDDLCRLMKKSGGKDAKPMTFLFSDTQI 145 (1650)
Q Consensus 71 l~~p~G~alLvGvgGSGrqSLtrLAafi~~~~~fqIeitk~Yg--~~~f~eDLk~l~~~~g~~~~k~~vFl~tD~qI 145 (1650)
+..|..+.||.|..|+||.+|+|..+--.++.++.+..+.-.+ ..+...-++.++..+. ...|.++++.|-+-
T Consensus 50 ~~~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~vl~iDEid~ 124 (297)
T 3b9p_A 50 LRAPAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVAR--HMQPSIIFIDEVDS 124 (297)
T ss_dssp GGCCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTSSSSCSCHHHHHHHHHHHHH--HTCSEEEEEETGGG
T ss_pred CCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHhhcccchHHHHHHHHHHHHH--HcCCcEEEeccHHH
Confidence 3467789999999999999999998888888888886543211 1223344555555554 35677777877643
No 18
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=91.95 E-value=0.4 Score=54.80 Aligned_cols=101 Identities=13% Similarity=0.257 Sum_probs=62.1
Q ss_pred CccccCCHHHHHHHHHHHHHH-HhccCCCCCcceeehHHHHHHHHHHHHHhcCCCCceEEEecCCchhhhHHHHHHHhcC
Q psy4724 22 VYDEIDNLDLLTEKINQYIVD-YNTQNSNKPIDIVTFLYIIQHISRLCRILQQPKGHAMLITIGGSGAAEVTKLATFMNE 100 (1650)
Q Consensus 22 ~Y~~~~~~~~l~~~l~~~l~~-yN~~~~~~~m~lVlF~~ai~Hv~rI~Ril~~p~G~alLvGvgGSGrqSLtrLAafi~~ 100 (1650)
.|++|.-.+.+++.|.+.+.. |.. .++++++. +..|+| .+|+|+.|+||.+|+|..|-..+
T Consensus 8 ~~~di~g~~~~~~~l~~~i~~~~~~------------~~~l~~~~-----l~~~~G-vlL~Gp~GtGKTtLakala~~~~ 69 (274)
T 2x8a_A 8 TWADIGALEDIREELTMAILAPVRN------------PDQFKALG-----LVTPAG-VLLAGPPGCGKTLLAKAVANESG 69 (274)
T ss_dssp ----CCHHHHHHHHHHHHHTHHHHS------------HHHHHHTT-----CCCCSE-EEEESSTTSCHHHHHHHHHHHTT
T ss_pred CHHHhCCHHHHHHHHHHHHHHHhhC------------HHHHHHcC-----CCCCCe-EEEECCCCCcHHHHHHHHHHHcC
Confidence 477787777788777765432 221 23333332 467888 99999999999999999998888
Q ss_pred CceEEEEEcccC--CcchhHHHHHHHHHHhccCCCCCEEEEEec
Q psy4724 101 YVLFEIEILKTY--GLTDWRDDLCRLMKKSGGKDAKPMTFLFSD 142 (1650)
Q Consensus 101 ~~~fqIeitk~Y--g~~~f~eDLk~l~~~~g~~~~k~~vFl~tD 142 (1650)
...+.+.-..-. ...+....++.++..+. ...|.+.++.+
T Consensus 70 ~~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~--~~~p~i~~~De 111 (274)
T 2x8a_A 70 LNFISVKGPELLNMYVGESERAVRQVFQRAK--NSAPCVIFFDE 111 (274)
T ss_dssp CEEEEEETTTTCSSTTHHHHHHHHHHHHHHH--HTCSEEEEEET
T ss_pred CCEEEEEcHHHHhhhhhHHHHHHHHHHHHHH--hcCCCeEeeeh
Confidence 876666432211 12344556777777653 23466555544
No 19
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=91.89 E-value=0.36 Score=57.53 Aligned_cols=89 Identities=15% Similarity=0.189 Sum_probs=63.1
Q ss_pred ceeehHHHHHHHHHHHHH----------hcCCCCceEEEecCCchhhhHHHHHHHhcCCceEEEEEcccCC--cchhHHH
Q psy4724 53 DIVTFLYIIQHISRLCRI----------LQQPKGHAMLITIGGSGAAEVTKLATFMNEYVLFEIEILKTYG--LTDWRDD 120 (1650)
Q Consensus 53 ~lVlF~~ai~Hv~rI~Ri----------l~~p~G~alLvGvgGSGrqSLtrLAafi~~~~~fqIeitk~Yg--~~~f~eD 120 (1650)
+++=-+++++.+.++... +..|..++||.|..|+||.+|+|..+-..++.++.+..+.-.+ ..+....
T Consensus 85 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~~~~g~~~~~ 164 (357)
T 3d8b_A 85 DIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKWVGEGEKM 164 (357)
T ss_dssp GSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCCSSTTHHHHH
T ss_pred HhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhccccchHHHH
Confidence 566678888888776643 3456778999999999999999999988899988887653222 2234455
Q ss_pred HHHHHHHhccCCCCCEEEEEecC
Q psy4724 121 LCRLMKKSGGKDAKPMTFLFSDT 143 (1650)
Q Consensus 121 Lk~l~~~~g~~~~k~~vFl~tD~ 143 (1650)
++.++..+. ..++.+++|.|-
T Consensus 165 ~~~~~~~a~--~~~~~vl~iDEi 185 (357)
T 3d8b_A 165 VRALFAVAR--CQQPAVIFIDEI 185 (357)
T ss_dssp HHHHHHHHH--HTCSEEEEEETH
T ss_pred HHHHHHHHH--hcCCeEEEEeCc
Confidence 666666654 345677666653
No 20
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=91.55 E-value=1.6 Score=39.57 Aligned_cols=70 Identities=16% Similarity=0.143 Sum_probs=39.4
Q ss_pred HhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4724 753 KIVGPKKAKLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKLERAE 822 (1650)
Q Consensus 753 ~~v~P~~~~l~~~e~~l~~~~~~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~ 822 (1650)
+++.-++...+.+...+..++..+...+......++.+..|+..+.....+.+..+..+..++.+|+.|+
T Consensus 6 kKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLeeae 75 (81)
T 1ic2_A 6 KKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLELAD 75 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555555555555555555555555555555555555555555555555555555544
No 21
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=91.40 E-value=0.48 Score=54.94 Aligned_cols=88 Identities=11% Similarity=0.114 Sum_probs=54.9
Q ss_pred eeehHHHHHHHHHHHHHh-------------cCCCCceEEEecCCchhhhHHHHHHHhcC-------CceEEEEEcccCC
Q psy4724 54 IVTFLYIIQHISRLCRIL-------------QQPKGHAMLITIGGSGAAEVTKLATFMNE-------YVLFEIEILKTYG 113 (1650)
Q Consensus 54 lVlF~~ai~Hv~rI~Ril-------------~~p~G~alLvGvgGSGrqSLtrLAafi~~-------~~~fqIeitk~Yg 113 (1650)
+|=-+++++.|.++.+.+ ..|.+|+||.|..|+||.+|+|..+...+ ..++.+..+.-++
T Consensus 33 i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~~ 112 (309)
T 3syl_A 33 LIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLVG 112 (309)
T ss_dssp SSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTCC
T ss_pred ccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhhh
Confidence 455577888777766644 45677999999999999999986554432 2455554332111
Q ss_pred --cchhHHHHHHHHHHhccCCCCCEEEEEecCCcC
Q psy4724 114 --LTDWRDDLCRLMKKSGGKDAKPMTFLFSDTQIQ 146 (1650)
Q Consensus 114 --~~~f~eDLk~l~~~~g~~~~k~~vFl~tD~qI~ 146 (1650)
.......++.++..+. +.++++.|-+-.
T Consensus 113 ~~~g~~~~~~~~~~~~~~-----~~vl~iDEid~l 142 (309)
T 3syl_A 113 QYIGHTAPKTKEVLKRAM-----GGVLFIDEAYYL 142 (309)
T ss_dssp SSTTCHHHHHHHHHHHHT-----TSEEEEETGGGS
T ss_pred hcccccHHHHHHHHHhcC-----CCEEEEEChhhh
Confidence 1122345566666653 247778887644
No 22
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=91.39 E-value=0.44 Score=57.04 Aligned_cols=107 Identities=9% Similarity=0.035 Sum_probs=61.4
Q ss_pred cceeehHHHHHHHHHHHH-Hh-cCCCCceEEEecCCchhhhHHHHHHHhc---------CCceEEEEEcccCCcchh---
Q psy4724 52 IDIVTFLYIIQHISRLCR-IL-QQPKGHAMLITIGGSGAAEVTKLATFMN---------EYVLFEIEILKTYGLTDW--- 117 (1650)
Q Consensus 52 m~lVlF~~ai~Hv~rI~R-il-~~p~G~alLvGvgGSGrqSLtrLAafi~---------~~~~fqIeitk~Yg~~~f--- 117 (1650)
-++|=-+..++.+.+..+ .+ ..+.++++|.|++|+||.+|++..+--. ++.++.+......+...+
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 98 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASA 98 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHH
Confidence 345656677777766543 32 3456799999999999999998766554 555655653322111111
Q ss_pred ---------------HHH-HHHHHHHhccCCCCCEEEEEecCCcCchh--hHHHHHHHHh
Q psy4724 118 ---------------RDD-LCRLMKKSGGKDAKPMTFLFSDTQIQNEV--FVEHINMLLN 159 (1650)
Q Consensus 118 ---------------~eD-Lk~l~~~~g~~~~k~~vFl~tD~qI~~E~--fLedIN~lL~ 159 (1650)
..+ +..+..... ..++++++++.|-|-.... -.+-+..++.
T Consensus 99 l~~~l~~~~~~~~~~~~~~~~~l~~~l~-~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~ 157 (387)
T 2v1u_A 99 IAEAVGVRVPFTGLSVGEVYERLVKRLS-RLRGIYIIVLDEIDFLPKRPGGQDLLYRITR 157 (387)
T ss_dssp HHHHHSCCCCSSCCCHHHHHHHHHHHHT-TSCSEEEEEEETTTHHHHSTTHHHHHHHHHH
T ss_pred HHHHhCCCCCCCCCCHHHHHHHHHHHHh-ccCCeEEEEEccHhhhcccCCCChHHHhHhh
Confidence 112 222222222 2456888889888754333 3344455554
No 23
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=91.31 E-value=0.62 Score=54.86 Aligned_cols=101 Identities=7% Similarity=0.069 Sum_probs=70.1
Q ss_pred ceeehHHHHHHHHHHHHHh---cCCCCceEEEecCCchhhhHHHHHHHhcCCceEEEEEcccCCcchhHHHHHHHHHHhc
Q psy4724 53 DIVTFLYIIQHISRLCRIL---QQPKGHAMLITIGGSGAAEVTKLATFMNEYVLFEIEILKTYGLTDWRDDLCRLMKKSG 129 (1650)
Q Consensus 53 ~lVlF~~ai~Hv~rI~Ril---~~p~G~alLvGvgGSGrqSLtrLAafi~~~~~fqIeitk~Yg~~~f~eDLk~l~~~~g 129 (1650)
++|--+.+++.+.+..+.. ..+.+|+||.|..|+||.+|+|..+.-.+..+..+...-.-+ ..++..++...+
T Consensus 30 ~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 105 (338)
T 3pfi_A 30 GYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIEK----SGDLAAILTNLS 105 (338)
T ss_dssp GCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCCS----HHHHHHHHHTCC
T ss_pred HhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhccc----hhHHHHHHHhcc
Confidence 5777788888877776665 345679999999999999999999888888877775543222 334545554433
Q ss_pred cCCCCCEEEEEecCCcCchhhHHHHHHHHhhh
Q psy4724 130 GKDAKPMTFLFSDTQIQNEVFVEHINMLLNTA 161 (1650)
Q Consensus 130 ~~~~k~~vFl~tD~qI~~E~fLedIN~lL~tg 161 (1650)
.+.++++.|-+-......+.+...|..+
T Consensus 106 ----~~~vl~lDEi~~l~~~~~~~Ll~~l~~~ 133 (338)
T 3pfi_A 106 ----EGDILFIDEIHRLSPAIEEVLYPAMEDY 133 (338)
T ss_dssp ----TTCEEEEETGGGCCHHHHHHHHHHHHTS
T ss_pred ----CCCEEEEechhhcCHHHHHHHHHHHHhc
Confidence 4567788887766555555555555544
No 24
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=91.20 E-value=0.18 Score=62.42 Aligned_cols=84 Identities=18% Similarity=0.244 Sum_probs=52.9
Q ss_pred ceeehHHHHHHHHHHHHHhcCCCCceEEEecCCchhhhHHHHHHHh----------cCCceEEEEEcccCCcchhHHHHH
Q psy4724 53 DIVTFLYIIQHISRLCRILQQPKGHAMLITIGGSGAAEVTKLATFM----------NEYVLFEIEILKTYGLTDWRDDLC 122 (1650)
Q Consensus 53 ~lVlF~~ai~Hv~rI~Ril~~p~G~alLvGvgGSGrqSLtrLAafi----------~~~~~fqIeitk~Yg~~~f~eDLk 122 (1650)
++|=-++.|+.+..+.+ +...+|.||+|..|+||.+|++.-+.. .+..++.+..+ ++...+|.+.++
T Consensus 181 ~iiGr~~~i~~l~~~l~--r~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~-~~~~g~~e~~~~ 257 (468)
T 3pxg_A 181 PVIGRSKEIQRVIEVLS--RRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG-TKYRGEFEDRLK 257 (468)
T ss_dssp CCCCCHHHHHHHHHHHH--CSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-----------CTTHH
T ss_pred CccCcHHHHHHHHHHHh--ccCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC-ccccchHHHHHH
Confidence 47777888887665532 355789999999999999999866554 47788888777 433455667788
Q ss_pred HHHHHhccCCCCCEEEEEec
Q psy4724 123 RLMKKSGGKDAKPMTFLFSD 142 (1650)
Q Consensus 123 ~l~~~~g~~~~k~~vFl~tD 142 (1650)
.++..+. . .++.+ ||-|
T Consensus 258 ~~~~~~~-~-~~~~i-LfiD 274 (468)
T 3pxg_A 258 KVMDEIR-Q-AGNII-LFID 274 (468)
T ss_dssp HHHHHHH-T-CCCCE-EEEC
T ss_pred HHHHHHH-h-cCCeE-EEEe
Confidence 8887665 2 33443 4455
No 25
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=91.19 E-value=0.34 Score=56.78 Aligned_cols=71 Identities=13% Similarity=0.220 Sum_probs=51.8
Q ss_pred cCCCCceEEEecCCchhhhHHHHHHHhcCCceEEEEEcc--cCCcchhHHHHHHHHHHhccCCCCCEEEEEecCC
Q psy4724 72 QQPKGHAMLITIGGSGAAEVTKLATFMNEYVLFEIEILK--TYGLTDWRDDLCRLMKKSGGKDAKPMTFLFSDTQ 144 (1650)
Q Consensus 72 ~~p~G~alLvGvgGSGrqSLtrLAafi~~~~~fqIeitk--~Yg~~~f~eDLk~l~~~~g~~~~k~~vFl~tD~q 144 (1650)
..|..++||.|..|+||.+|+|..|--++..++.+..+. +-...+...-++.++..+. ..+|.+++|.|-+
T Consensus 48 ~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~--~~~~~vl~iDEid 120 (322)
T 3eie_A 48 RKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMAR--ENKPSIIFIDQVD 120 (322)
T ss_dssp CCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHHTTTGGGHHHHHHHHHHHHH--HTSSEEEEEECGG
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHhhcccchHHHHHHHHHHHHH--hcCCeEEEechhh
Confidence 457778999999999999999999988899998886542 1112234455667777665 4567777777755
No 26
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=91.13 E-value=0.45 Score=63.70 Aligned_cols=90 Identities=10% Similarity=0.130 Sum_probs=57.8
Q ss_pred ceeehHHHHHHHHHHHHHhc-CCCCceEEEecCCchhhhHHHHHHHhc----------CCceEEEEEcccC----Ccchh
Q psy4724 53 DIVTFLYIIQHISRLCRILQ-QPKGHAMLITIGGSGAAEVTKLATFMN----------EYVLFEIEILKTY----GLTDW 117 (1650)
Q Consensus 53 ~lVlF~~ai~Hv~rI~Ril~-~p~G~alLvGvgGSGrqSLtrLAafi~----------~~~~fqIeitk~Y----g~~~f 117 (1650)
++|--++.+..+. ++|. .+..|.||+|..|+||.+|++..+... ++.++.+..+.-. ...+|
T Consensus 171 ~viGr~~~i~~l~---~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~g~~~~g~~ 247 (854)
T 1qvr_A 171 PVIGRDEEIRRVI---QILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEF 247 (854)
T ss_dssp CCCSCHHHHHHHH---HHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-----------CH
T ss_pred ccCCcHHHHHHHH---HHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhccCccchHH
Confidence 3555555555544 4443 456799999999999999998776543 7778877654211 12367
Q ss_pred HHHHHHHHHHhccCCCCCEEEEEecCCcC
Q psy4724 118 RDDLCRLMKKSGGKDAKPMTFLFSDTQIQ 146 (1650)
Q Consensus 118 ~eDLk~l~~~~g~~~~k~~vFl~tD~qI~ 146 (1650)
.+.++.++..+. ..++++++++.|-+-.
T Consensus 248 ~~~l~~~~~~~~-~~~~~~iL~IDEi~~l 275 (854)
T 1qvr_A 248 EERLKAVIQEVV-QSQGEVILFIDELHTV 275 (854)
T ss_dssp HHHHHHHHHHHH-TTCSSEEEEECCC---
T ss_pred HHHHHHHHHHHH-hcCCCeEEEEecHHHH
Confidence 778888888776 3456788888877654
No 27
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=91.05 E-value=0.89 Score=53.20 Aligned_cols=104 Identities=13% Similarity=0.177 Sum_probs=65.7
Q ss_pred CccccCCHHHHHHHHHHHHHHHhccCCCCCcceeehHHHHHHHHHHHHHhcCCCCceEEEecCCchhhhHHHHHHHhc-C
Q psy4724 22 VYDEIDNLDLLTEKINQYIVDYNTQNSNKPIDIVTFLYIIQHISRLCRILQQPKGHAMLITIGGSGAAEVTKLATFMN-E 100 (1650)
Q Consensus 22 ~Y~~~~~~~~l~~~l~~~l~~yN~~~~~~~m~lVlF~~ai~Hv~rI~Ril~~p~G~alLvGvgGSGrqSLtrLAafi~-~ 100 (1650)
.+++|...+.+++.|.+.+.-.-. .+. +|. -...|..++||.|+.|+||.+|+|..|.-+ +
T Consensus 10 ~~~di~G~~~~k~~l~~~v~~p~~-~~~------~~~-----------~~~~~~~~iLL~GppGtGKT~la~ala~~~~~ 71 (322)
T 1xwi_A 10 KWSDVAGLEGAKEALKEAVILPIK-FPH------LFT-----------GKRTPWRGILLFGPPGTGKSYLAKAVATEANN 71 (322)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHH-CGG------GSC-----------TTCCCCSEEEEESSSSSCHHHHHHHHHHHTTS
T ss_pred CHHHhcCHHHHHHHHHHHHHHHHh-CHH------HHh-----------CCCCCCceEEEECCCCccHHHHHHHHHHHcCC
Confidence 466676667677766666543211 000 011 124577889999999999999998877666 7
Q ss_pred CceEEEEEcccCC--cchhHHHHHHHHHHhccCCCCCEEEEEecCCc
Q psy4724 101 YVLFEIEILKTYG--LTDWRDDLCRLMKKSGGKDAKPMTFLFSDTQI 145 (1650)
Q Consensus 101 ~~~fqIeitk~Yg--~~~f~eDLk~l~~~~g~~~~k~~vFl~tD~qI 145 (1650)
..++.+..+.-.+ ..+....++.++..+. ..+|.+++|.|-+-
T Consensus 72 ~~~~~i~~~~l~~~~~g~~~~~~~~lf~~a~--~~~~~vl~iDEid~ 116 (322)
T 1xwi_A 72 STFFSISSSDLVSKWLGESEKLVKNLFQLAR--ENKPSIIFIDEIDS 116 (322)
T ss_dssp CEEEEEECCSSCCSSCCSCHHHHHHHHHHHH--HTSSEEEEEETTTG
T ss_pred CcEEEEEhHHHHhhhhhHHHHHHHHHHHHHH--hcCCcEEEeecHHH
Confidence 7888886542111 1223455667777665 45788888887654
No 28
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=90.82 E-value=0.53 Score=56.11 Aligned_cols=49 Identities=10% Similarity=0.077 Sum_probs=38.5
Q ss_pred ceeehHHHHHHHHHHHHHhcCCC---CceEEEecCCchhhhHHHHHHHhcCC
Q psy4724 53 DIVTFLYIIQHISRLCRILQQPK---GHAMLITIGGSGAAEVTKLATFMNEY 101 (1650)
Q Consensus 53 ~lVlF~~ai~Hv~rI~Ril~~p~---G~alLvGvgGSGrqSLtrLAafi~~~ 101 (1650)
++|--+.+++-+..+.+.+...+ .++||.|..|+||.+|+|..+-..++
T Consensus 45 ~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~ 96 (368)
T 3uk6_A 45 GMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGP 96 (368)
T ss_dssp TEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCS
T ss_pred hccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 57777778777777777776544 47999999999999999977766554
No 29
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=90.68 E-value=0.26 Score=65.08 Aligned_cols=103 Identities=13% Similarity=0.182 Sum_probs=70.2
Q ss_pred eeehHHHHHHHHHHHHHhc-------CCCCceEEEecCCchhhhHHHHHHHhc---CCceEEEEEcccCCcch--hHHHH
Q psy4724 54 IVTFLYIIQHISRLCRILQ-------QPKGHAMLITIGGSGAAEVTKLATFMN---EYVLFEIEILKTYGLTD--WRDDL 121 (1650)
Q Consensus 54 lVlF~~ai~Hv~rI~Ril~-------~p~G~alLvGvgGSGrqSLtrLAafi~---~~~~fqIeitk~Yg~~~--f~eDL 121 (1650)
+|=.+.|++.|.+..+..+ .|.||.||+|..|+||.+|+|..+... +..+..|..+. |.... ....+
T Consensus 493 viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~-~~~~~~~~~~~l 571 (758)
T 3pxi_A 493 VIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSE-YMEKHSTSGGQL 571 (758)
T ss_dssp SCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGG-GCSSCCCC---C
T ss_pred CcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechh-cccccccccchh
Confidence 5667889988888877654 577899999999999999999877664 56677776552 22110 01112
Q ss_pred HHHHHHhccCCCCCEEEEEecCCcCchhhHHHHHHHHhhhh
Q psy4724 122 CRLMKKSGGKDAKPMTFLFSDTQIQNEVFVEHINMLLNTAR 162 (1650)
Q Consensus 122 k~l~~~~g~~~~k~~vFl~tD~qI~~E~fLedIN~lL~tge 162 (1650)
.....+ +...|++|.|-+-....+..-+..+|..|.
T Consensus 572 ~~~~~~-----~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~ 607 (758)
T 3pxi_A 572 TEKVRR-----KPYSVVLLDAIEKAHPDVFNILLQVLEDGR 607 (758)
T ss_dssp HHHHHH-----CSSSEEEEECGGGSCHHHHHHHHHHHHHSB
T ss_pred hHHHHh-----CCCeEEEEeCccccCHHHHHHHHHHhccCe
Confidence 122222 233588888887777777777888888775
No 30
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=90.65 E-value=0.61 Score=52.43 Aligned_cols=101 Identities=9% Similarity=0.130 Sum_probs=61.2
Q ss_pred CccccCCHHHHHHHHHHHHHHHhccCCCCCcceeehHHHHHHHHHHHHHhcCCCCceEEEecCCchhhhHHHHHHHhcCC
Q psy4724 22 VYDEIDNLDLLTEKINQYIVDYNTQNSNKPIDIVTFLYIIQHISRLCRILQQPKGHAMLITIGGSGAAEVTKLATFMNEY 101 (1650)
Q Consensus 22 ~Y~~~~~~~~l~~~l~~~l~~yN~~~~~~~m~lVlF~~ai~Hv~rI~Ril~~p~G~alLvGvgGSGrqSLtrLAafi~~~ 101 (1650)
.++++.-.+.....+.+....|.. ..++.++ -++.|+| .+|+|..|+||.+|+|..+-..+.
T Consensus 14 ~~~~i~g~~~~~~~l~~l~~~~~~------------~~~~~~~-----~~~~~~g-~ll~G~~G~GKTtl~~~i~~~~~~ 75 (254)
T 1ixz_A 14 TFKDVAGAEEAKEELKEIVEFLKN------------PSRFHEM-----GARIPKG-VLLVGPPGVGKTHLARAVAGEARV 75 (254)
T ss_dssp CGGGCCSCHHHHHHHHHHHHHHHC------------HHHHHHT-----TCCCCSE-EEEECCTTSSHHHHHHHHHHHTTC
T ss_pred CHHHhCCcHHHHHHHHHHHHHHHC------------HHHHHHc-----CCCCCCe-EEEECCCCCCHHHHHHHHHHHhCC
Confidence 466666666666667666666642 1222222 1466888 999999999999999998887776
Q ss_pred ceEEEEEcc--cCCcchhHHHHHHHHHHhccCCCCCEEEEEec
Q psy4724 102 VLFEIEILK--TYGLTDWRDDLCRLMKKSGGKDAKPMTFLFSD 142 (1650)
Q Consensus 102 ~~fqIeitk--~Yg~~~f~eDLk~l~~~~g~~~~k~~vFl~tD 142 (1650)
..+.+.-.. ..........++.++..+. ...|.+.++.|
T Consensus 76 ~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~i~~~De 116 (254)
T 1ixz_A 76 PFITASGSDFVEMFVGVGAARVRDLFETAK--RHAPCIVFIDE 116 (254)
T ss_dssp CEEEEEHHHHHHSCTTHHHHHHHHHHHHHT--TSSSEEEEEET
T ss_pred CEEEeeHHHHHHHHhhHHHHHHHHHHHHHH--hcCCeEEEehh
Confidence 655554221 1112233455666777654 23455555443
No 31
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=90.44 E-value=0.65 Score=57.52 Aligned_cols=120 Identities=11% Similarity=0.151 Sum_probs=71.2
Q ss_pred CCccccCCHHHHHHHHHHHHHHHhccCCCCCcceeehHHHHHHHHHHHHHhcCCCCceEEEecCCchhhhHHHHHHHhcC
Q psy4724 21 LVYDEIDNLDLLTEKINQYIVDYNTQNSNKPIDIVTFLYIIQHISRLCRILQQPKGHAMLITIGGSGAAEVTKLATFMNE 100 (1650)
Q Consensus 21 ~~Y~~~~~~~~l~~~l~~~l~~yN~~~~~~~m~lVlF~~ai~Hv~rI~Ril~~p~G~alLvGvgGSGrqSLtrLAafi~~ 100 (1650)
..+++|.-.+.....+.+....|.. .. ++.+ + -++.|+| +||+|..|+||.+|+|..+...+
T Consensus 28 ~~f~dv~G~~~~k~~l~~lv~~l~~--~~----------~~~~---l--g~~ip~G-vLL~GppGtGKTtLaraIa~~~~ 89 (499)
T 2dhr_A 28 VTFKDVAGAEEAKEELKEIVEFLKN--PS----------RFHE---M--GARIPKG-VLLVGPPGVGKTHLARAVAGEAR 89 (499)
T ss_dssp CCTTSSCSCHHHHHHHHHHHHHHHC--GG----------GTTT---T--SCCCCSE-EEEECSSSSSHHHHHHHHHHHTT
T ss_pred CCHHHcCCcHHHHHHHHHHHHHhhc--hh----------hhhh---c--cCCCCce-EEEECCCCCCHHHHHHHHHHHhC
Confidence 3466666666666666666665543 10 0111 1 1356888 99999999999999999998888
Q ss_pred CceEEEEEcccC--CcchhHHHHHHHHHHhccCCCCCEEEEEecCCcC-----------chhhHHHHHHHHhh
Q psy4724 101 YVLFEIEILKTY--GLTDWRDDLCRLMKKSGGKDAKPMTFLFSDTQIQ-----------NEVFVEHINMLLNT 160 (1650)
Q Consensus 101 ~~~fqIeitk~Y--g~~~f~eDLk~l~~~~g~~~~k~~vFl~tD~qI~-----------~E~fLedIN~lL~t 160 (1650)
..++.+.-+.-. -.......++.++..+- ...|.++++.|-+.. ++.+..-+|.+|..
T Consensus 90 ~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~--~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~ 160 (499)
T 2dhr_A 90 VPFITASGSDFVEMFVGVGAARVRDLFETAK--RHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVE 160 (499)
T ss_dssp CCEEEEEGGGGTSSCTTHHHHHHHHHTTTSS--SSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEehhHHHHhhhhhHHHHHHHHHHHHH--hcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHH
Confidence 777777543111 11223445656665543 345666666665322 23344556777753
No 32
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=90.32 E-value=0.85 Score=56.16 Aligned_cols=102 Identities=13% Similarity=0.224 Sum_probs=65.4
Q ss_pred CccccCCHHHHHHHHHHHHHHHhccCCCCCcceeehHHHHHHHHHHHHHhcCCCCceEEEecCCchhhhHHHHHHHhcCC
Q psy4724 22 VYDEIDNLDLLTEKINQYIVDYNTQNSNKPIDIVTFLYIIQHISRLCRILQQPKGHAMLITIGGSGAAEVTKLATFMNEY 101 (1650)
Q Consensus 22 ~Y~~~~~~~~l~~~l~~~l~~yN~~~~~~~m~lVlF~~ai~Hv~rI~Ril~~p~G~alLvGvgGSGrqSLtrLAafi~~~ 101 (1650)
.+.+|.-.+...+.+.+....|.. + ....++ -++.|+| +||+|+.|+||.+|+|..+--.+.
T Consensus 14 ~f~di~G~~~~~~~l~e~v~~l~~--~----------~~~~~~-----g~~~p~g-vLL~GppGtGKT~Laraia~~~~~ 75 (476)
T 2ce7_A 14 TFKDVGGAEEAIEELKEVVEFLKD--P----------SKFNRI-----GARMPKG-ILLVGPPGTGKTLLARAVAGEANV 75 (476)
T ss_dssp CGGGCCSCHHHHHHHHHHHHHHHC--T----------HHHHTT-----TCCCCSE-EEEECCTTSSHHHHHHHHHHHHTC
T ss_pred CHHHhCCcHHHHHHHHHHHHHhhC--h----------HHHhhc-----CCCCCCe-EEEECCCCCCHHHHHHHHHHHcCC
Confidence 466666666666666666555532 1 111111 1356777 999999999999999999988888
Q ss_pred ceEEEEEccc----CCcchhHHHHHHHHHHhccCCCCCEEEEEecCCc
Q psy4724 102 VLFEIEILKT----YGLTDWRDDLCRLMKKSGGKDAKPMTFLFSDTQI 145 (1650)
Q Consensus 102 ~~fqIeitk~----Yg~~~f~eDLk~l~~~~g~~~~k~~vFl~tD~qI 145 (1650)
.++.+..+.- .|.. ...++.++..+- .+.|++++|.|-+-
T Consensus 76 ~f~~is~~~~~~~~~g~~--~~~~r~lf~~A~--~~~p~ILfIDEid~ 119 (476)
T 2ce7_A 76 PFFHISGSDFVELFVGVG--AARVRDLFAQAK--AHAPCIVFIDEIDA 119 (476)
T ss_dssp CEEEEEGGGTTTCCTTHH--HHHHHHHHHHHH--HTCSEEEEEETGGG
T ss_pred CeeeCCHHHHHHHHhccc--HHHHHHHHHHHH--hcCCCEEEEechhh
Confidence 8888864421 1211 234556666664 35788888887644
No 33
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.29 E-value=0.76 Score=55.16 Aligned_cols=102 Identities=18% Similarity=0.253 Sum_probs=72.9
Q ss_pred CccccCCHHHHHHHHHHHHHHHhccCCCCCcceeehHHHHHHHHHHHHH-hcCCCCceEEEecCCchhhhHHHHHHHhcC
Q psy4724 22 VYDEIDNLDLLTEKINQYIVDYNTQNSNKPIDIVTFLYIIQHISRLCRI-LQQPKGHAMLITIGGSGAAEVTKLATFMNE 100 (1650)
Q Consensus 22 ~Y~~~~~~~~l~~~l~~~l~~yN~~~~~~~m~lVlF~~ai~Hv~rI~Ri-l~~p~G~alLvGvgGSGrqSLtrLAafi~~ 100 (1650)
.|.+|.-++..++.|.+.++-.-. ++ +.. .+. ++.|+| +||.|+.|+||.+|+|-.|.-++
T Consensus 180 ~~~DIgGld~~k~~L~e~v~~Pl~-~p----------e~f------~~~Gi~~prG-vLLyGPPGTGKTlLAkAiA~e~~ 241 (437)
T 4b4t_I 180 SYSDIGGLESQIQEIKESVELPLT-HP----------ELY------EEMGIKPPKG-VILYGAPGTGKTLLAKAVANQTS 241 (437)
T ss_dssp CGGGTCSCHHHHHHHHHHHHHHHH-CC----------HHH------HHHTCCCCSE-EEEESSTTTTHHHHHHHHHHHHT
T ss_pred cceecCcHHHHHHHHHHHHHHHHh-CH----------HHH------HhCCCCCCCC-CceECCCCchHHHHHHHHHHHhC
Confidence 588888888888888887765322 11 111 122 344554 89999999999999999999999
Q ss_pred CceEEEEEc----ccCCcchhHHHHHHHHHHhccCCCCCEEEEEecCCc
Q psy4724 101 YVLFEIEIL----KTYGLTDWRDDLCRLMKKSGGKDAKPMTFLFSDTQI 145 (1650)
Q Consensus 101 ~~~fqIeit----k~Yg~~~f~eDLk~l~~~~g~~~~k~~vFl~tD~qI 145 (1650)
..++.|..+ +.+|..+ .-++.++..|. ...|++++|.|-+.
T Consensus 242 ~~fi~v~~s~l~sk~vGese--k~ir~lF~~Ar--~~aP~IIfiDEiDa 286 (437)
T 4b4t_I 242 ATFLRIVGSELIQKYLGDGP--RLCRQIFKVAG--ENAPSIVFIDEIDA 286 (437)
T ss_dssp CEEEEEESGGGCCSSSSHHH--HHHHHHHHHHH--HTCSEEEEEEEESS
T ss_pred CCEEEEEHHHhhhccCchHH--HHHHHHHHHHH--hcCCcEEEEehhhh
Confidence 999999744 4455553 34667777765 57788888876553
No 34
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=90.23 E-value=4.1 Score=38.80 Aligned_cols=82 Identities=18% Similarity=0.245 Sum_probs=71.1
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhcc
Q psy4724 755 VGPKKAKLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKLERAEKLIGGLGGEKTR 834 (1650)
Q Consensus 755 v~P~~~~l~~~e~~l~~~~~~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~~Li~~L~~E~~r 834 (1650)
|+.++..++.++.++++.+.+|...-..|.+-+.++.+|++.-.....+.-.|..+...++..++.|..++.-=+.++..
T Consensus 13 ia~L~~D~~s~~~eleEnqeEL~iVgkML~EEqgKVDQlqKRn~~HQKEi~~Lrae~~~~QRn~~K~~~~Lkrn~~qQnQ 92 (167)
T 4gkw_A 13 VADLKQDTESLQKQLEENQEELEIVGNMLREEQGKVDQLQKRNVAHQKEIGKLRAELGTAQRNLEKADQLLKRNSQQQNQ 92 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhHHHhH
Confidence 45567778888888899999999999999999999999999999999999999999999999999999998876655544
Q ss_pred HH
Q psy4724 835 WS 836 (1650)
Q Consensus 835 W~ 836 (1650)
-.
T Consensus 93 QS 94 (167)
T 4gkw_A 93 QS 94 (167)
T ss_dssp HH
T ss_pred hh
Confidence 33
No 35
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=90.12 E-value=0.43 Score=56.73 Aligned_cols=90 Identities=11% Similarity=0.201 Sum_probs=62.5
Q ss_pred ceeehHHHHHHHHHHHHH----------hcCCCCceEEEecCCchhhhHHHHHHHhcCCceEEEEEcc---cCCcchhHH
Q psy4724 53 DIVTFLYIIQHISRLCRI----------LQQPKGHAMLITIGGSGAAEVTKLATFMNEYVLFEIEILK---TYGLTDWRD 119 (1650)
Q Consensus 53 ~lVlF~~ai~Hv~rI~Ri----------l~~p~G~alLvGvgGSGrqSLtrLAafi~~~~~fqIeitk---~Yg~~~f~e 119 (1650)
+++--+++++.+.+.... ...|..++||.|..|+||.+|+|..+--.+..++.+..+. .| ..+...
T Consensus 52 di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~~~~-~g~~~~ 130 (355)
T 2qp9_X 52 DVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKW-MGESEK 130 (355)
T ss_dssp GSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHHSCC----CHH
T ss_pred HhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHhhhh-cchHHH
Confidence 577777888777765421 1356678999999999999999998888899888886442 22 122345
Q ss_pred HHHHHHHHhccCCCCCEEEEEecCCc
Q psy4724 120 DLCRLMKKSGGKDAKPMTFLFSDTQI 145 (1650)
Q Consensus 120 DLk~l~~~~g~~~~k~~vFl~tD~qI 145 (1650)
.++.++..+. .++|.|++|.|-+-
T Consensus 131 ~~~~~f~~a~--~~~~~vl~iDEid~ 154 (355)
T 2qp9_X 131 LVKQLFAMAR--ENKPSIIFIDQVDA 154 (355)
T ss_dssp HHHHHHHHHH--HTSSEEEEEECGGG
T ss_pred HHHHHHHHHH--HcCCeEEEEechHh
Confidence 5666676654 45778888877653
No 36
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=90.11 E-value=0.53 Score=47.94 Aligned_cols=91 Identities=13% Similarity=0.061 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEEecCCchhhhHHHHHHHhc---CCceEEEEEcccCCcchhHHHHHHHHHHhccCCCC
Q psy4724 58 LYIIQHISRLCRILQQPKGHAMLITIGGSGAAEVTKLATFMN---EYVLFEIEILKTYGLTDWRDDLCRLMKKSGGKDAK 134 (1650)
Q Consensus 58 ~~ai~Hv~rI~Ril~~p~G~alLvGvgGSGrqSLtrLAafi~---~~~~fqIeitk~Yg~~~f~eDLk~l~~~~g~~~~k 134 (1650)
..++..+.+..+.+.....|+||.|..|+||.+|+|.-+..+ +..++ +..+.-.+. .++..++..+. +
T Consensus 7 s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~----~~~~~~~~~a~---~- 77 (145)
T 3n70_A 7 SEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA----PQLNDFIALAQ---G- 77 (145)
T ss_dssp SHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS----SCHHHHHHHHT---T-
T ss_pred CHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc----hhhhcHHHHcC---C-
Confidence 456677766666666778899999999999999999887765 55566 655533222 23444555553 1
Q ss_pred CEEEEEecCCcCchhhHHHHHHHH
Q psy4724 135 PMTFLFSDTQIQNEVFVEHINMLL 158 (1650)
Q Consensus 135 ~~vFl~tD~qI~~E~fLedIN~lL 158 (1650)
.++++.|-+-........+-.+|
T Consensus 78 -g~l~ldei~~l~~~~q~~Ll~~l 100 (145)
T 3n70_A 78 -GTLVLSHPEHLTREQQYHLVQLQ 100 (145)
T ss_dssp -SCEEEECGGGSCHHHHHHHHHHH
T ss_pred -cEEEEcChHHCCHHHHHHHHHHH
Confidence 24455555544443333333333
No 37
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=90.02 E-value=0.62 Score=54.02 Aligned_cols=106 Identities=16% Similarity=0.184 Sum_probs=62.0
Q ss_pred eehHHHHHHHHHHHHHhc-------CCCCceEEEecCCchhhhHHHHHHHhc---CCceEEEEEcccCCcchhHHHHH--
Q psy4724 55 VTFLYIIQHISRLCRILQ-------QPKGHAMLITIGGSGAAEVTKLATFMN---EYVLFEIEILKTYGLTDWRDDLC-- 122 (1650)
Q Consensus 55 VlF~~ai~Hv~rI~Ril~-------~p~G~alLvGvgGSGrqSLtrLAafi~---~~~~fqIeitk~Yg~~~f~eDLk-- 122 (1650)
+=-+.|++.+....+-.. .|.|+.||+|..|+||.+|+|.-+-.. +..++.+..+ .+.......++-
T Consensus 20 ~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~l~g~ 98 (311)
T 4fcw_A 20 VGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMT-EYMEKHAVSRLIGA 98 (311)
T ss_dssp CSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGG-GCCSTTHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecc-cccccccHHHhcCC
Confidence 334677777766554432 457899999999999999999766554 3446666543 232222111110
Q ss_pred ----------HHHHHhccCCCCCEEEEEecCCcCchhhHHHHHHHHhhhh
Q psy4724 123 ----------RLMKKSGGKDAKPMTFLFSDTQIQNEVFVEHINMLLNTAR 162 (1650)
Q Consensus 123 ----------~l~~~~g~~~~k~~vFl~tD~qI~~E~fLedIN~lL~tge 162 (1650)
..+..+. ......+++|.+-+-........+-.+|..|.
T Consensus 99 ~~~~~~~~~~~~~~~~~-~~~~~~vl~lDEi~~l~~~~~~~Ll~~le~~~ 147 (311)
T 4fcw_A 99 PPGYVGYEEGGQLTEAV-RRRPYSVILFDAIEKAHPDVFNILLQMLDDGR 147 (311)
T ss_dssp CTTSTTTTTCCHHHHHH-HHCSSEEEEEETGGGSCHHHHHHHHHHHHHSE
T ss_pred CCccccccccchHHHHH-HhCCCeEEEEeChhhcCHHHHHHHHHHHhcCE
Confidence 1111111 11233688888877766666666666666653
No 38
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=89.89 E-value=1 Score=52.56 Aligned_cols=102 Identities=10% Similarity=0.100 Sum_probs=63.8
Q ss_pred ceeehHHHHHHHHHHHHHhcCCCCceEEE-ecCCchhhhHHHHHHHhcCCceEEEEEcccCCcchhHHHHHHHHHHhccC
Q psy4724 53 DIVTFLYIIQHISRLCRILQQPKGHAMLI-TIGGSGAAEVTKLATFMNEYVLFEIEILKTYGLTDWRDDLCRLMKKSGGK 131 (1650)
Q Consensus 53 ~lVlF~~ai~Hv~rI~Ril~~p~G~alLv-GvgGSGrqSLtrLAafi~~~~~fqIeitk~Yg~~~f~eDLk~l~~~~g~~ 131 (1650)
++|--+.+++.+.+..+ +....|++|+ |..|+||.++++..+.-.++.++.+..+ .++....++-++....... .
T Consensus 27 ~ivg~~~~~~~l~~~l~--~~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~-~~~~~~i~~~~~~~~~~~~-~ 102 (324)
T 3u61_B 27 ECILPAFDKETFKSITS--KGKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGS-DCKIDFVRGPLTNFASAAS-F 102 (324)
T ss_dssp TSCCCHHHHHHHHHHHH--TTCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETT-TCCHHHHHTHHHHHHHBCC-C
T ss_pred HHhCcHHHHHHHHHHHH--cCCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEccc-ccCHHHHHHHHHHHHhhcc-c
Confidence 56666777666555544 1222366555 5599999999998888778888887743 4565555554444333333 3
Q ss_pred CCCCEEEEEecCCcCc-hhhHHHHHHHH
Q psy4724 132 DAKPMTFLFSDTQIQN-EVFVEHINMLL 158 (1650)
Q Consensus 132 ~~k~~vFl~tD~qI~~-E~fLedIN~lL 158 (1650)
.+++.++++.|.+-.. ....+.+..++
T Consensus 103 ~~~~~vliiDEi~~l~~~~~~~~L~~~l 130 (324)
T 3u61_B 103 DGRQKVIVIDEFDRSGLAESQRHLRSFM 130 (324)
T ss_dssp SSCEEEEEEESCCCGGGHHHHHHHHHHH
T ss_pred CCCCeEEEEECCcccCcHHHHHHHHHHH
Confidence 5578899999988765 43333333333
No 39
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=89.87 E-value=6.1 Score=37.36 Aligned_cols=77 Identities=10% Similarity=0.067 Sum_probs=47.6
Q ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy4724 751 VIKIVGPKKAKLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKLERAEKLIGG 827 (1650)
Q Consensus 751 v~~~v~P~~~~l~~~e~~l~~~~~~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~~Li~~ 827 (1650)
|-+++.-++...+.+......++..+..........++.+..|+..+.....+.+.++..+..+..+|+-+.+....
T Consensus 7 IKkKm~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~ 83 (101)
T 3u1c_A 7 IKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAK 83 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556666666666666666666666666666666666666666666666666666666666666665555443
No 40
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=89.85 E-value=0.69 Score=52.85 Aligned_cols=102 Identities=9% Similarity=0.135 Sum_probs=59.3
Q ss_pred CCccccCCHHHHHHHHHHHHHHHhccCCCCCcceeehHHHHHHHHHHHHHhcCCCCceEEEecCCchhhhHHHHHHHhcC
Q psy4724 21 LVYDEIDNLDLLTEKINQYIVDYNTQNSNKPIDIVTFLYIIQHISRLCRILQQPKGHAMLITIGGSGAAEVTKLATFMNE 100 (1650)
Q Consensus 21 ~~Y~~~~~~~~l~~~l~~~l~~yN~~~~~~~m~lVlF~~ai~Hv~rI~Ril~~p~G~alLvGvgGSGrqSLtrLAafi~~ 100 (1650)
..++++.-.+.....+.+....|.. ..++..+ -++.|+| .+|+|..||||.+|+|..+-..+
T Consensus 37 ~~~~~i~g~~~~~~~l~~l~~~~~~------------~~~l~~~-----~~~~~~g-vll~Gp~GtGKTtl~~~i~~~~~ 98 (278)
T 1iy2_A 37 VTFKDVAGAEEAKEELKEIVEFLKN------------PSRFHEM-----GARIPKG-VLLVGPPGVGKTHLARAVAGEAR 98 (278)
T ss_dssp CCGGGSSSCHHHHHHHHHHHHHHHC------------HHHHHHT-----TCCCCCE-EEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCHHHhCChHHHHHHHHHHHHHHHC------------HHHHHHc-----CCCCCCe-EEEECCCcChHHHHHHHHHHHcC
Confidence 3456665556666666666555542 1122211 1356788 99999999999999999888777
Q ss_pred CceEEEEEcc--cCCcchhHHHHHHHHHHhccCCCCCEEEEEec
Q psy4724 101 YVLFEIEILK--TYGLTDWRDDLCRLMKKSGGKDAKPMTFLFSD 142 (1650)
Q Consensus 101 ~~~fqIeitk--~Yg~~~f~eDLk~l~~~~g~~~~k~~vFl~tD 142 (1650)
...+.+.-.. ..........+..++..+. ...|.+.++.|
T Consensus 99 ~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~i~~iDe 140 (278)
T 1iy2_A 99 VPFITASGSDFVEMFVGVGAARVRDLFETAK--RHAPCIVFIDE 140 (278)
T ss_dssp CCEEEEEHHHHHHSTTTHHHHHHHHHHHHHH--TSCSEEEEEET
T ss_pred CCEEEecHHHHHHHHhhHHHHHHHHHHHHHH--hcCCcEEehhh
Confidence 6555553221 1112233455666676654 23455544433
No 41
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=89.81 E-value=0.64 Score=49.14 Aligned_cols=93 Identities=11% Similarity=0.064 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHhcCC-CCceEEEecCCchhhhHHHHHHHhc----CCceEEEEEcccCCcchhHHHHHHHHHHhccCC--
Q psy4724 60 IIQHISRLCRILQQP-KGHAMLITIGGSGAAEVTKLATFMN----EYVLFEIEILKTYGLTDWRDDLCRLMKKSGGKD-- 132 (1650)
Q Consensus 60 ai~Hv~rI~Ril~~p-~G~alLvGvgGSGrqSLtrLAafi~----~~~~fqIeitk~Yg~~~f~eDLk~l~~~~g~~~-- 132 (1650)
|++.+.++.+-+..+ +.+.+|+|..||||.+|++..+... |+.+.-+ +..++.+.++..+.... ..
T Consensus 22 ~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~------~~~~~~~~~~~~~~~~~-~~~~ 94 (180)
T 3ec2_A 22 ALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFF------DTKDLIFRLKHLMDEGK-DTKF 94 (180)
T ss_dssp HHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEE------EHHHHHHHHHHHHHHTC-CSHH
T ss_pred HHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEE------EHHHHHHHHHHHhcCch-HHHH
Confidence 333333444444433 4578899999999999998776543 5444333 34566666654443221 10
Q ss_pred ----CCCEEEEEecCCc--CchhhHHHHHHHHh
Q psy4724 133 ----AKPMTFLFSDTQI--QNEVFVEHINMLLN 159 (1650)
Q Consensus 133 ----~k~~vFl~tD~qI--~~E~fLedIN~lL~ 159 (1650)
.++-++++.|-.. .++...+.+..+++
T Consensus 95 ~~~~~~~~llilDE~~~~~~~~~~~~~l~~ll~ 127 (180)
T 3ec2_A 95 LKTVLNSPVLVLDDLGSERLSDWQRELISYIIT 127 (180)
T ss_dssp HHHHHTCSEEEEETCSSSCCCHHHHHHHHHHHH
T ss_pred HHHhcCCCEEEEeCCCCCcCCHHHHHHHHHHHH
Confidence 1456777887652 33333444555543
No 42
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=89.37 E-value=0.5 Score=57.95 Aligned_cols=105 Identities=10% Similarity=0.122 Sum_probs=63.8
Q ss_pred eeehHHHHHHHHHHHHHhcCCCC-ceEEEecCCchhhhHHHHHHHhcCCceEEEEEcccCCcchhHHHHHHHHHHhccCC
Q psy4724 54 IVTFLYIIQHISRLCRILQQPKG-HAMLITIGGSGAAEVTKLATFMNEYVLFEIEILKTYGLTDWRDDLCRLMKKSGGKD 132 (1650)
Q Consensus 54 lVlF~~ai~Hv~rI~Ril~~p~G-~alLvGvgGSGrqSLtrLAafi~~~~~fqIeitk~Yg~~~f~eDLk~l~~~~g~~~ 132 (1650)
+|=-+.++.....+.+.+...+. ++||.|..|+||.+|+|.-+-..+..+..+... +.|..++++-+....... ..
T Consensus 28 ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~-~~~~~~ir~~~~~a~~~~--~~ 104 (447)
T 3pvs_A 28 YIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANADVERISAV-TSGVKEIREAIERARQNR--NA 104 (447)
T ss_dssp CCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETT-TCCHHHHHHHHHHHHHHH--HT
T ss_pred hCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEec-cCCHHHHHHHHHHHHHhh--hc
Confidence 44445555333466667766554 899999999999999999998888888777533 455555555444333222 24
Q ss_pred CCCEEEEEecCCcCchhhHHHHHHHHhhh
Q psy4724 133 AKPMTFLFSDTQIQNEVFVEHINMLLNTA 161 (1650)
Q Consensus 133 ~k~~vFl~tD~qI~~E~fLedIN~lL~tg 161 (1650)
+++.++++.|-+-........+...|..|
T Consensus 105 ~~~~iLfIDEI~~l~~~~q~~LL~~le~~ 133 (447)
T 3pvs_A 105 GRRTILFVDEVHRFNKSQQDAFLPHIEDG 133 (447)
T ss_dssp TCCEEEEEETTTCC------CCHHHHHTT
T ss_pred CCCcEEEEeChhhhCHHHHHHHHHHHhcC
Confidence 56788888887765443333333334333
No 43
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=88.90 E-value=10 Score=38.59 Aligned_cols=74 Identities=23% Similarity=0.301 Sum_probs=56.2
Q ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4724 744 AMEVYDRVIKIVGPKKAKLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKLERA 821 (1650)
Q Consensus 744 A~~~Y~~v~~~v~P~~~~l~~~e~~l~~~~~~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra 821 (1650)
|=.+|..|.+ ....|+.++..+..+.........+|..+...+..|...-....++-+.++.++..++.++.-|
T Consensus 16 ad~KyeEvaR----~E~dLEraEERae~aE~k~~eLEeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEA 89 (155)
T 2efr_A 16 NYHLENEVAR----LKKLLERAEERAELSEGKSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEA 89 (155)
T ss_dssp HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456887777 7788888898888888888888888888888888888777777777676666666666555433
No 44
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=88.84 E-value=0.54 Score=51.78 Aligned_cols=101 Identities=12% Similarity=0.117 Sum_probs=59.3
Q ss_pred ceeehHHHHHHHHHHHHHhcCCCCceEEEecCCchhhhHHHHHHHhcCC------------------------ceEEEEE
Q psy4724 53 DIVTFLYIIQHISRLCRILQQPKGHAMLITIGGSGAAEVTKLATFMNEY------------------------VLFEIEI 108 (1650)
Q Consensus 53 ~lVlF~~ai~Hv~rI~Ril~~p~G~alLvGvgGSGrqSLtrLAafi~~~------------------------~~fqIei 108 (1650)
++|--+.+++.+.+..+- ..+.+..+|.|.+|+||.+|++..+--.++ .++.+..
T Consensus 24 ~~~g~~~~~~~l~~~l~~-~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (250)
T 1njg_A 24 DVVGQEHVLTALANGLSL-GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDA 102 (250)
T ss_dssp GCCSCHHHHHHHHHHHHH-TCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHTTCCSSEEEEET
T ss_pred HHhCcHHHHHHHHHHHHc-CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhccCCcceEEecC
Confidence 456566666655444332 112246899999999999998765543322 2333322
Q ss_pred cccCCcchhHHHHHHHHHHhcc--CCCCCEEEEEecCCcCchhhHHHHHHHH
Q psy4724 109 LKTYGLTDWRDDLCRLMKKSGG--KDAKPMTFLFSDTQIQNEVFVEHINMLL 158 (1650)
Q Consensus 109 tk~Yg~~~f~eDLk~l~~~~g~--~~~k~~vFl~tD~qI~~E~fLedIN~lL 158 (1650)
. .....++++.++..... ..+++.++++.|-|-.+...++.+-.+|
T Consensus 103 ~----~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l 150 (250)
T 1njg_A 103 A----SRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTL 150 (250)
T ss_dssp T----CGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHH
T ss_pred c----ccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHH
Confidence 2 12335566666665431 2457899999998877665555554444
No 45
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=88.71 E-value=0.65 Score=54.02 Aligned_cols=92 Identities=13% Similarity=0.165 Sum_probs=54.1
Q ss_pred ceeehHHHHHHHHHHHHHhcCC-CCceEEEecCCchhhhHHHHHHHhc-----CCceEEEEEcccCCcchhHHHHHHHHH
Q psy4724 53 DIVTFLYIIQHISRLCRILQQP-KGHAMLITIGGSGAAEVTKLATFMN-----EYVLFEIEILKTYGLTDWRDDLCRLMK 126 (1650)
Q Consensus 53 ~lVlF~~ai~Hv~rI~Ril~~p-~G~alLvGvgGSGrqSLtrLAafi~-----~~~~fqIeitk~Yg~~~f~eDLk~l~~ 126 (1650)
++|--+.+++++.+. +... .+|.||.|.+|+||.++++..+--. +..++.+..+...+...+++-++.+..
T Consensus 22 ~~~g~~~~~~~l~~~---l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 98 (323)
T 1sxj_B 22 DIVGNKETIDRLQQI---AKDGNMPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGIDVVRNQIKHFAQ 98 (323)
T ss_dssp GCCSCTHHHHHHHHH---HHSCCCCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSHHHHHTHHHHHHH
T ss_pred HHHCCHHHHHHHHHH---HHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccccChHHHHHHHHHHHh
Confidence 344445666655444 4333 3579999999999999987655432 234555544443455555544433331
Q ss_pred -HhccC-CCCCEEEEEecCCcCch
Q psy4724 127 -KSGGK-DAKPMTFLFSDTQIQNE 148 (1650)
Q Consensus 127 -~~g~~-~~k~~vFl~tD~qI~~E 148 (1650)
..+ . .+++.++++.|.+-...
T Consensus 99 ~~~~-~~~~~~~viiiDe~~~l~~ 121 (323)
T 1sxj_B 99 KKLH-LPPGKHKIVILDEADSMTA 121 (323)
T ss_dssp BCCC-CCTTCCEEEEEESGGGSCH
T ss_pred cccc-CCCCCceEEEEECcccCCH
Confidence 122 3 44588999999876544
No 46
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=88.61 E-value=0.59 Score=54.14 Aligned_cols=68 Identities=15% Similarity=0.249 Sum_probs=46.7
Q ss_pred CCCCceEEEecCCchhhhHHHHHHHhcCCceEEEEEc----ccCCcchhHHHHHHHHHHhccCCCCCEEEEEecCC
Q psy4724 73 QPKGHAMLITIGGSGAAEVTKLATFMNEYVLFEIEIL----KTYGLTDWRDDLCRLMKKSGGKDAKPMTFLFSDTQ 144 (1650)
Q Consensus 73 ~p~G~alLvGvgGSGrqSLtrLAafi~~~~~fqIeit----k~Yg~~~f~eDLk~l~~~~g~~~~k~~vFl~tD~q 144 (1650)
.|..+.||.|..|+||.+|+|.-+-..+..++.|... +-+|.. ...++.++..+. ...|.+++|.|-+
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~~~~g~~--~~~~~~~f~~a~--~~~p~il~iDEid 118 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGES--EANVREIFDKAR--QAAPCVLFFDELD 118 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHHHHHTTC--TTHHHHHHHHHH--HTCSEEEEECSTT
T ss_pred CCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHhhhcCch--HHHHHHHHHHHH--hcCCeEEEEEChH
Confidence 4566799999999999999999988888887777422 112222 234566677664 3467777776644
No 47
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.55 E-value=1.2 Score=54.04 Aligned_cols=102 Identities=11% Similarity=0.147 Sum_probs=70.8
Q ss_pred CccccCCHHHHHHHHHHHHHHHhccCCCCCcceeehHHHHHHHHHHHHHhcCCCCceEEEecCCchhhhHHHHHHHhcCC
Q psy4724 22 VYDEIDNLDLLTEKINQYIVDYNTQNSNKPIDIVTFLYIIQHISRLCRILQQPKGHAMLITIGGSGAAEVTKLATFMNEY 101 (1650)
Q Consensus 22 ~Y~~~~~~~~l~~~l~~~l~~yN~~~~~~~m~lVlF~~ai~Hv~rI~Ril~~p~G~alLvGvgGSGrqSLtrLAafi~~~ 101 (1650)
.|++|.-.+..++.|.+.+.-.-. ++ + ...+.=-.|...+||.|+.|+||.+|+|-.|.-++.
T Consensus 179 t~~digGl~~~k~~l~e~v~~pl~-~p----------e------~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~ 241 (434)
T 4b4t_M 179 TYSDVGGLDKQIEELVEAIVLPMK-RA----------D------KFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNA 241 (434)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHH-CS----------H------HHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTC
T ss_pred ChHhcCcHHHHHHHHHHHHHHHHh-CH----------H------HHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCC
Confidence 588888888888888776654332 11 1 122222234455889999999999999999999999
Q ss_pred ceEEEEEc----ccCCcchhHHHHHHHHHHhccCCCCCEEEEEecCC
Q psy4724 102 VLFEIEIL----KTYGLTDWRDDLCRLMKKSGGKDAKPMTFLFSDTQ 144 (1650)
Q Consensus 102 ~~fqIeit----k~Yg~~~f~eDLk~l~~~~g~~~~k~~vFl~tD~q 144 (1650)
.++.+..+ +.+|..+ .-++.++..|- ...|++++|.|-+
T Consensus 242 ~f~~v~~s~l~~~~vGese--~~ir~lF~~A~--~~aP~IifiDEiD 284 (434)
T 4b4t_M 242 TFLKLAAPQLVQMYIGEGA--KLVRDAFALAK--EKAPTIIFIDELD 284 (434)
T ss_dssp EEEEEEGGGGCSSCSSHHH--HHHHHHHHHHH--HHCSEEEEEECTH
T ss_pred CEEEEehhhhhhcccchHH--HHHHHHHHHHH--hcCCeEEeecchh
Confidence 99999754 3445553 45667777665 5678887776643
No 48
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.40 E-value=0.84 Score=55.32 Aligned_cols=102 Identities=13% Similarity=0.151 Sum_probs=71.1
Q ss_pred CccccCCHHHHHHHHHHHHHHHhccCCCCCcceeehHHHHHHHHHHHHH-hcCCCCceEEEecCCchhhhHHHHHHHhcC
Q psy4724 22 VYDEIDNLDLLTEKINQYIVDYNTQNSNKPIDIVTFLYIIQHISRLCRI-LQQPKGHAMLITIGGSGAAEVTKLATFMNE 100 (1650)
Q Consensus 22 ~Y~~~~~~~~l~~~l~~~l~~yN~~~~~~~m~lVlF~~ai~Hv~rI~Ri-l~~p~G~alLvGvgGSGrqSLtrLAafi~~ 100 (1650)
.|.+|.-++.+++.|.+.+.-.-. . .+.. .+. ++.|+ .+||.|+.|+||.+|+|-.|.-++
T Consensus 207 t~~DIgGl~~~k~~L~e~V~~pl~-~----------pe~f------~~~Gi~ppr-GILLyGPPGTGKTlLAkAiA~e~~ 268 (467)
T 4b4t_H 207 TYSDVGGCKDQIEKLREVVELPLL-S----------PERF------ATLGIDPPK-GILLYGPPGTGKTLCARAVANRTD 268 (467)
T ss_dssp CCSSCTTCHHHHHHHHHHTHHHHH-C----------HHHH------HHHTCCCCS-EEEECSCTTSSHHHHHHHHHHHHT
T ss_pred CHHHhccHHHHHHHHHHHHHHHhc-C----------HHHH------HHCCCCCCC-ceEeeCCCCCcHHHHHHHHHhccC
Confidence 477787778888777776543221 0 1211 222 34555 588999999999999999999999
Q ss_pred CceEEEEEc----ccCCcchhHHHHHHHHHHhccCCCCCEEEEEecCCc
Q psy4724 101 YVLFEIEIL----KTYGLTDWRDDLCRLMKKSGGKDAKPMTFLFSDTQI 145 (1650)
Q Consensus 101 ~~~fqIeit----k~Yg~~~f~eDLk~l~~~~g~~~~k~~vFl~tD~qI 145 (1650)
..++.+..+ +.+|..+ ..++.++..|- ...|++++|.+-+.
T Consensus 269 ~~fi~vs~s~L~sk~vGese--k~ir~lF~~Ar--~~aP~IIfiDEiDa 313 (467)
T 4b4t_H 269 ATFIRVIGSELVQKYVGEGA--RMVRELFEMAR--TKKACIIFFDEIDA 313 (467)
T ss_dssp CEEEEEEGGGGCCCSSSHHH--HHHHHHHHHHH--HTCSEEEEEECCTT
T ss_pred CCeEEEEhHHhhcccCCHHH--HHHHHHHHHHH--hcCCceEeeccccc
Confidence 999999754 3455553 45777787775 56788888877654
No 49
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=88.33 E-value=0.49 Score=55.00 Aligned_cols=92 Identities=11% Similarity=0.097 Sum_probs=56.7
Q ss_pred eeehHHHHHHHHHHHHHhcCC-CCceEEEecCCchhhhHHHHHHHhc-----CCceEEEEEcccCCcchhHHHHHHHHHH
Q psy4724 54 IVTFLYIIQHISRLCRILQQP-KGHAMLITIGGSGAAEVTKLATFMN-----EYVLFEIEILKTYGLTDWRDDLCRLMKK 127 (1650)
Q Consensus 54 lVlF~~ai~Hv~rI~Ril~~p-~G~alLvGvgGSGrqSLtrLAafi~-----~~~~fqIeitk~Yg~~~f~eDLk~l~~~ 127 (1650)
+|--+.+++.+. +.+... .+|.||.|..|+||.++++..+--. +..+..+..+...|....++-++.....
T Consensus 19 ~~g~~~~~~~l~---~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (319)
T 2chq_A 19 VVGQDEVIQRLK---GYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIKEFART 95 (319)
T ss_dssp SCSCHHHHHHHH---TTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTCTTTSSHHHHHHHHS
T ss_pred HhCCHHHHHHHH---HHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccChHHHHHHHHHHHhc
Confidence 333344444333 333333 2479999999999999987655432 2346666666556777777766555533
Q ss_pred hccCCCCCEEEEEecCCcCch
Q psy4724 128 SGGKDAKPMTFLFSDTQIQNE 148 (1650)
Q Consensus 128 ~g~~~~k~~vFl~tD~qI~~E 148 (1650)
.....+++.++++.|.+-...
T Consensus 96 ~~~~~~~~~vliiDe~~~l~~ 116 (319)
T 2chq_A 96 APIGGAPFKIIFLDEADALTA 116 (319)
T ss_dssp CCSSSCCCEEEEEETGGGSCH
T ss_pred CCCCCCCceEEEEeCCCcCCH
Confidence 332235678888988776544
No 50
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=88.32 E-value=1.1 Score=52.32 Aligned_cols=102 Identities=12% Similarity=0.081 Sum_probs=65.1
Q ss_pred ceeehHHHHHHHHHHHHHhc---CCCCceEEEecCCchhhhHHHHHHHhcCCceEEEEEcccCCcchhHHHHHHHHHHhc
Q psy4724 53 DIVTFLYIIQHISRLCRILQ---QPKGHAMLITIGGSGAAEVTKLATFMNEYVLFEIEILKTYGLTDWRDDLCRLMKKSG 129 (1650)
Q Consensus 53 ~lVlF~~ai~Hv~rI~Ril~---~p~G~alLvGvgGSGrqSLtrLAafi~~~~~fqIeitk~Yg~~~f~eDLk~l~~~~g 129 (1650)
++|--+.+++.+.+..+... .+..++||.|..|+||.+|++..+.-.++.++.+..+.-.. ..++...+..+
T Consensus 13 ~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~----~~~l~~~l~~~- 87 (324)
T 1hqc_A 13 EYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEK----PGDLAAILANS- 87 (324)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCS----HHHHHHHHTTT-
T ss_pred HhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCC----hHHHHHHHHHh-
Confidence 45555666666665544332 35679999999999999999988877787766654332212 34554544431
Q ss_pred cCCCCCEEEEEecCCcCchhhHHHHHHHHhhh
Q psy4724 130 GKDAKPMTFLFSDTQIQNEVFVEHINMLLNTA 161 (1650)
Q Consensus 130 ~~~~k~~vFl~tD~qI~~E~fLedIN~lL~tg 161 (1650)
...+.++++.|-+-......+.+..+|..+
T Consensus 88 --~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~ 117 (324)
T 1hqc_A 88 --LEEGDILFIDEIHRLSRQAEEHLYPAMEDF 117 (324)
T ss_dssp --CCTTCEEEETTTTSCCHHHHHHHHHHHHHS
T ss_pred --ccCCCEEEEECCcccccchHHHHHHHHHhh
Confidence 134567788888766655555565566554
No 51
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=88.24 E-value=1.7 Score=51.96 Aligned_cols=102 Identities=13% Similarity=0.066 Sum_probs=58.1
Q ss_pred eeehHHHHHHHHHH-HHHhcCCC-C--ceEEEecCCchhhhHHHHHHHhc----CCceEEEEEcccCCc-----------
Q psy4724 54 IVTFLYIIQHISRL-CRILQQPK-G--HAMLITIGGSGAAEVTKLATFMN----EYVLFEIEILKTYGL----------- 114 (1650)
Q Consensus 54 lVlF~~ai~Hv~rI-~Ril~~p~-G--~alLvGvgGSGrqSLtrLAafi~----~~~~fqIeitk~Yg~----------- 114 (1650)
+|=-+..++.+.+. .+.+..+. + +++|+|..|+||.+|++..+-.. ++.+..+......+.
T Consensus 19 l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l 98 (389)
T 1fnn_A 19 LPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIARSL 98 (389)
T ss_dssp CTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHHHHHHHT
T ss_pred CCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHHHHHHHHHHHh
Confidence 33334444444432 22333333 4 69999999999999998766554 445555553322211
Q ss_pred -----------chhHHHHHHHHHHhccCCCCCEEEEEecCCcCchhhHHHHHHHHh
Q psy4724 115 -----------TDWRDDLCRLMKKSGGKDAKPMTFLFSDTQIQNEVFVEHINMLLN 159 (1650)
Q Consensus 115 -----------~~f~eDLk~l~~~~g~~~~k~~vFl~tD~qI~~E~fLedIN~lL~ 159 (1650)
.++.+.+...+.. .+++.++++.|-|-.+...+..+-.++.
T Consensus 99 ~~~~~~~~~~~~~~~~~l~~~l~~----~~~~~vlilDE~~~l~~~~~~~L~~~~~ 150 (389)
T 1fnn_A 99 NIPFPRRGLSRDEFLALLVEHLRE----RDLYMFLVLDDAFNLAPDILSTFIRLGQ 150 (389)
T ss_dssp TCCCCSSCCCHHHHHHHHHHHHHH----TTCCEEEEEETGGGSCHHHHHHHHHHTT
T ss_pred CccCCCCCCCHHHHHHHHHHHHhh----cCCeEEEEEECccccchHHHHHHHHHHH
Confidence 1222223222222 2468899999988777766666655553
No 52
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.00 E-value=1.4 Score=53.25 Aligned_cols=101 Identities=12% Similarity=0.241 Sum_probs=72.7
Q ss_pred CccccCCHHHHHHHHHHHHHHHhccCCCCCcceeehHHHHHHHHHHHHHhcCCCCceEEEecCCchhhhHHHHHHHhcCC
Q psy4724 22 VYDEIDNLDLLTEKINQYIVDYNTQNSNKPIDIVTFLYIIQHISRLCRILQQPKGHAMLITIGGSGAAEVTKLATFMNEY 101 (1650)
Q Consensus 22 ~Y~~~~~~~~l~~~l~~~l~~yN~~~~~~~m~lVlF~~ai~Hv~rI~Ril~~p~G~alLvGvgGSGrqSLtrLAafi~~~ 101 (1650)
.|.+|.-++.+++.|.+.+.-.-. + .+...+ + -+..|+| .||.|+.|+||.+|+|-.|.-++.
T Consensus 170 ~~~digGl~~~k~~l~e~v~~pl~-~----------p~~~~~---~--g~~~prG-iLL~GPPGtGKT~lakAiA~~~~~ 232 (428)
T 4b4t_K 170 TYADVGGLDMQKQEIREAVELPLV-Q----------ADLYEQ---I--GIDPPRG-VLLYGPPGTGKTMLVKAVANSTKA 232 (428)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHH-C----------HHHHHH---H--CCCCCCE-EEEESCTTTTHHHHHHHHHHHHTC
T ss_pred CHHHhccHHHHHHHHHHHHHHHHh-C----------HHHHHh---C--CCCCCce-EEEECCCCCCHHHHHHHHHHHhCC
Confidence 588898888888888887765432 1 122221 1 1466676 889999999999999999999999
Q ss_pred ceEEEEEcc----cCCcchhHHHHHHHHHHhccCCCCCEEEEEecC
Q psy4724 102 VLFEIEILK----TYGLTDWRDDLCRLMKKSGGKDAKPMTFLFSDT 143 (1650)
Q Consensus 102 ~~fqIeitk----~Yg~~~f~eDLk~l~~~~g~~~~k~~vFl~tD~ 143 (1650)
.++.+..+. .+|..+ .-++.++..|- ...|++++|.+-
T Consensus 233 ~~~~v~~~~l~~~~~Ge~e--~~ir~lF~~A~--~~aP~IifiDEi 274 (428)
T 4b4t_K 233 AFIRVNGSEFVHKYLGEGP--RMVRDVFRLAR--ENAPSIIFIDEV 274 (428)
T ss_dssp EEEEEEGGGTCCSSCSHHH--HHHHHHHHHHH--HTCSEEEEEECT
T ss_pred CeEEEecchhhccccchhH--HHHHHHHHHHH--HcCCCeeechhh
Confidence 999998553 345443 45777788775 567888777653
No 53
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=87.99 E-value=0.72 Score=53.77 Aligned_cols=103 Identities=11% Similarity=0.112 Sum_probs=59.3
Q ss_pred ceeehHHHHHHHHHHHHHhcCC-CCceEEEecCCchhhhHHHHHHHhc-C----CceEEEEEcccCCcchhHHHHHHHHH
Q psy4724 53 DIVTFLYIIQHISRLCRILQQP-KGHAMLITIGGSGAAEVTKLATFMN-E----YVLFEIEILKTYGLTDWRDDLCRLMK 126 (1650)
Q Consensus 53 ~lVlF~~ai~Hv~rI~Ril~~p-~G~alLvGvgGSGrqSLtrLAafi~-~----~~~fqIeitk~Yg~~~f~eDLk~l~~ 126 (1650)
++|--+.+++.+.+. +... .+|.||.|+.|+||.++++..+--. + ..++.+..+...+...+++.++....
T Consensus 26 ~~~g~~~~~~~l~~~---l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (327)
T 1iqp_A 26 DIVGQEHIVKRLKHY---VKTGSMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERGINVIREKVKEFAR 102 (327)
T ss_dssp TCCSCHHHHHHHHHH---HHHTCCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHHHHTTHHHHHHHHH
T ss_pred HhhCCHHHHHHHHHH---HHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccCchHHHHHHHHHHHh
Confidence 455556666655543 3332 3479999999999999997655432 1 23555544433345556665654443
Q ss_pred HhccCCCCCEEEEEecCCcCchhhHHHHHHHH
Q psy4724 127 KSGGKDAKPMTFLFSDTQIQNEVFVEHINMLL 158 (1650)
Q Consensus 127 ~~g~~~~k~~vFl~tD~qI~~E~fLedIN~lL 158 (1650)
......+++.++++.|.+-......+.+..++
T Consensus 103 ~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~l 134 (327)
T 1iqp_A 103 TKPIGGASFKIIFLDEADALTQDAQQALRRTM 134 (327)
T ss_dssp SCCGGGCSCEEEEEETGGGSCHHHHHHHHHHH
T ss_pred hCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHH
Confidence 22211256788889988766544333333333
No 54
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=87.79 E-value=0.64 Score=58.34 Aligned_cols=89 Identities=13% Similarity=0.092 Sum_probs=56.2
Q ss_pred CCCceEEEecCCchhhhHHHHHHHhcCCceEEEEEcccCCcchhHHHHHH---------HHHHh---ccCCCCCEEEEEe
Q psy4724 74 PKGHAMLITIGGSGAAEVTKLATFMNEYVLFEIEILKTYGLTDWRDDLCR---------LMKKS---GGKDAKPMTFLFS 141 (1650)
Q Consensus 74 p~G~alLvGvgGSGrqSLtrLAafi~~~~~fqIeitk~Yg~~~f~eDLk~---------l~~~~---g~~~~k~~vFl~t 141 (1650)
+..++||.|+.|+||.+|++..+--.++.++.+..+...+...+.+.++. ++..+ ....+++.|+++.
T Consensus 76 ~~~~lLL~GppGtGKTtla~~la~~l~~~~i~in~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliID 155 (516)
T 1sxj_A 76 VFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMD 155 (516)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEEC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeCCCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEE
Confidence 44689999999999999999988888998888865533332222221211 11111 0023577888998
Q ss_pred cCCcCc---hhhHHHHHHHHhhhh
Q psy4724 142 DTQIQN---EVFVEHINMLLNTAR 162 (1650)
Q Consensus 142 D~qI~~---E~fLedIN~lL~tge 162 (1650)
|-+-.. .+++..++.++.++.
T Consensus 156 Eid~l~~~~~~~l~~L~~~l~~~~ 179 (516)
T 1sxj_A 156 EVDGMSGGDRGGVGQLAQFCRKTS 179 (516)
T ss_dssp SGGGCCTTSTTHHHHHHHHHHHCS
T ss_pred CCCccchhhHHHHHHHHHHHHhcC
Confidence 877543 245667777776654
No 55
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.63 E-value=2 Score=52.08 Aligned_cols=102 Identities=14% Similarity=0.169 Sum_probs=71.1
Q ss_pred CccccCCHHHHHHHHHHHHHHHhccCCCCCcceeehHHHHHHHHHHHHH-hcCCCCceEEEecCCchhhhHHHHHHHhcC
Q psy4724 22 VYDEIDNLDLLTEKINQYIVDYNTQNSNKPIDIVTFLYIIQHISRLCRI-LQQPKGHAMLITIGGSGAAEVTKLATFMNE 100 (1650)
Q Consensus 22 ~Y~~~~~~~~l~~~l~~~l~~yN~~~~~~~m~lVlF~~ai~Hv~rI~Ri-l~~p~G~alLvGvgGSGrqSLtrLAafi~~ 100 (1650)
.|.+|.-++..++.|.+.+.--- .|=-...+. ++.|+ .+||.|+.|+||.+|+|-.|.-++
T Consensus 179 ~~~digGl~~~k~~l~e~v~~pl-----------------~~p~~f~~~g~~~pr-GvLL~GPPGtGKTllAkAiA~e~~ 240 (437)
T 4b4t_L 179 TFDGIGGLTEQIRELREVIELPL-----------------KNPEIFQRVGIKPPK-GVLLYGPPGTGKTLLAKAVAATIG 240 (437)
T ss_dssp CSGGGCSCHHHHHHHHHHHHHHH-----------------HCHHHHHHHCCCCCC-EEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ChhHhCChHHHHHHHHHHHHHHH-----------------hCHHHHHhCCCCCCC-eEEEECCCCCcHHHHHHHHHHHhC
Confidence 47888877777777777665321 111122222 34444 588999999999999999999999
Q ss_pred CceEEEEEc----ccCCcchhHHHHHHHHHHhccCCCCCEEEEEecCCc
Q psy4724 101 YVLFEIEIL----KTYGLTDWRDDLCRLMKKSGGKDAKPMTFLFSDTQI 145 (1650)
Q Consensus 101 ~~~fqIeit----k~Yg~~~f~eDLk~l~~~~g~~~~k~~vFl~tD~qI 145 (1650)
..++.|..+ +.+|..+ ..++.++..|- ...|++++|.+-+.
T Consensus 241 ~~~~~v~~s~l~sk~~Gese--~~ir~~F~~A~--~~~P~IifiDEiDa 285 (437)
T 4b4t_L 241 ANFIFSPASGIVDKYIGESA--RIIREMFAYAK--EHEPCIIFMDEVDA 285 (437)
T ss_dssp CEEEEEEGGGTCCSSSSHHH--HHHHHHHHHHH--HSCSEEEEEECCCS
T ss_pred CCEEEEehhhhccccchHHH--HHHHHHHHHHH--hcCCceeeeecccc
Confidence 999999754 3455553 45677777775 57889888877664
No 56
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=87.49 E-value=0.94 Score=55.80 Aligned_cols=89 Identities=8% Similarity=0.025 Sum_probs=60.1
Q ss_pred ceeehHHHHHHHHHHHHHhc---CCCCceEEEecCCchhhhHHHHHHHhcC--CceEEEEEcc----cCCcchhHHHHHH
Q psy4724 53 DIVTFLYIIQHISRLCRILQ---QPKGHAMLITIGGSGAAEVTKLATFMNE--YVLFEIEILK----TYGLTDWRDDLCR 123 (1650)
Q Consensus 53 ~lVlF~~ai~Hv~rI~Ril~---~p~G~alLvGvgGSGrqSLtrLAafi~~--~~~fqIeitk----~Yg~~~f~eDLk~ 123 (1650)
++|-.+.+++.+.++.+.++ .|.+|+||.|+.|+||.+|+|.-|-..+ ..++.+..+. .+|.. +.+..
T Consensus 38 ~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 114 (456)
T 2c9o_A 38 GLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKT---EVLME 114 (456)
T ss_dssp TEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCCSSSCHH---HHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHHHhhhhh---HHHHH
Confidence 46666777766666555553 3667899999999999999998888888 6677765442 23433 33778
Q ss_pred HHHHhcc-CCCCCEEEEEecCC
Q psy4724 124 LMKKSGG-KDAKPMTFLFSDTQ 144 (1650)
Q Consensus 124 l~~~~g~-~~~k~~vFl~tD~q 144 (1650)
++.+|-+ ....|++++|.|-+
T Consensus 115 ~f~~a~~~~~~~~~il~iDEid 136 (456)
T 2c9o_A 115 NFRRAIGLRIKETKEVYEGEVT 136 (456)
T ss_dssp HHHHTEEEEEEEEEEEEEEEEE
T ss_pred HHHHHHhhhhcCCcEEEEechh
Confidence 8888721 13456666666543
No 57
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=87.32 E-value=6.9 Score=35.33 Aligned_cols=69 Identities=20% Similarity=0.261 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4724 758 KKAKLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKLERAEKLIG 826 (1650)
Q Consensus 758 ~~~~l~~~e~~l~~~~~~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~~Li~ 826 (1650)
.+.++..++...+.+..++...+..+...+.+......++.......+.++.+++.++.+|..|..-+.
T Consensus 4 ikkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLe 72 (81)
T 1ic2_A 4 IKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLE 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888888888888888888888888888888888888888888888888888877766443
No 58
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=87.01 E-value=9.9 Score=35.90 Aligned_cols=76 Identities=16% Similarity=0.143 Sum_probs=45.0
Q ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4724 751 VIKIVGPKKAKLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKLERAEKLIG 826 (1650)
Q Consensus 751 v~~~v~P~~~~l~~~e~~l~~~~~~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~~Li~ 826 (1650)
|-+++.-++...+.+......++..+.........+++.+..|+..+.....+.+.++..+..++.+|+.+.+...
T Consensus 7 iKkKm~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~ 82 (101)
T 3u59_A 7 IKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKAT 82 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555666666666666666666666666666666666666665555555556666666655555555443
No 59
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=86.89 E-value=1.5 Score=52.40 Aligned_cols=38 Identities=16% Similarity=0.128 Sum_probs=32.8
Q ss_pred cCCCCceEEEecCCchhhhHHHHHHHhcCCceEEEEEc
Q psy4724 72 QQPKGHAMLITIGGSGAAEVTKLATFMNEYVLFEIEIL 109 (1650)
Q Consensus 72 ~~p~G~alLvGvgGSGrqSLtrLAafi~~~~~fqIeit 109 (1650)
..+.+|.||+|..|+||.+|+|..+...+..++.+..+
T Consensus 69 ~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~ 106 (376)
T 1um8_A 69 ELSKSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDAT 106 (376)
T ss_dssp TCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGG
T ss_pred ccCCCCEEEECCCCCCHHHHHHHHHHHhCCCEEEecch
Confidence 45788999999999999999999888888888877654
No 60
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=86.86 E-value=1 Score=52.66 Aligned_cols=88 Identities=16% Similarity=0.124 Sum_probs=50.9
Q ss_pred HHHHhcCCC---CceEEEecCCchhhhHHHHHHHhc---CCceEEEEEcccCCcchhHHHHHHHHHHhcc-----CCCCC
Q psy4724 67 LCRILQQPK---GHAMLITIGGSGAAEVTKLATFMN---EYVLFEIEILKTYGLTDWRDDLCRLMKKSGG-----KDAKP 135 (1650)
Q Consensus 67 I~Ril~~p~---G~alLvGvgGSGrqSLtrLAafi~---~~~~fqIeitk~Yg~~~f~eDLk~l~~~~g~-----~~~k~ 135 (1650)
+-+++..|+ ++.+|.|..|+||.+|++..+.-. +..++.+... +|..++...+..... .-+.+
T Consensus 26 ~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~------~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (324)
T 1l8q_A 26 VKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSAD------DFAQAMVEHLKKGTINEFRNMYKSV 99 (324)
T ss_dssp HHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHH------HHHHHHHHHHHHTCHHHHHHHHHTC
T ss_pred HHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHH------HHHHHHHHHHHcCcHHHHHHHhcCC
Confidence 445556664 589999999999999998776655 6777777433 333333222211100 00135
Q ss_pred EEEEEecCCcCc------hhhHHHHHHHHhh
Q psy4724 136 MTFLFSDTQIQN------EVFVEHINMLLNT 160 (1650)
Q Consensus 136 ~vFl~tD~qI~~------E~fLedIN~lL~t 160 (1650)
.++++.|-|-.. +.++..+|.+...
T Consensus 100 ~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~ 130 (324)
T 1l8q_A 100 DLLLLDDVQFLSGKERTQIEFFHIFNTLYLL 130 (324)
T ss_dssp SEEEEECGGGGTTCHHHHHHHHHHHHHHHHT
T ss_pred CEEEEcCcccccCChHHHHHHHHHHHHHHHC
Confidence 688888866543 3344444544443
No 61
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=86.83 E-value=1 Score=53.64 Aligned_cols=56 Identities=13% Similarity=0.204 Sum_probs=37.3
Q ss_pred ceeehHHHHHHHHHHHH-Hh-cCCCCceEEEecCCchhhhHHHHHHHhc------CCceEEEEE
Q psy4724 53 DIVTFLYIIQHISRLCR-IL-QQPKGHAMLITIGGSGAAEVTKLATFMN------EYVLFEIEI 108 (1650)
Q Consensus 53 ~lVlF~~ai~Hv~rI~R-il-~~p~G~alLvGvgGSGrqSLtrLAafi~------~~~~fqIei 108 (1650)
++|=-++.++.+.+..+ .+ ..+.++++|+|.+|+||.+|++..+-.. ++.++.+..
T Consensus 21 ~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~ 84 (386)
T 2qby_A 21 ELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINT 84 (386)
T ss_dssp CCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEH
T ss_pred CCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEC
Confidence 44444556665554432 22 3345689999999999999998766554 666666653
No 62
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.66 E-value=1.5 Score=52.43 Aligned_cols=102 Identities=16% Similarity=0.217 Sum_probs=71.5
Q ss_pred CccccCCHHHHHHHHHHHHHHHhccCCCCCcceeehHHHHHHHHHHHHH-hcCCCCceEEEecCCchhhhHHHHHHHhcC
Q psy4724 22 VYDEIDNLDLLTEKINQYIVDYNTQNSNKPIDIVTFLYIIQHISRLCRI-LQQPKGHAMLITIGGSGAAEVTKLATFMNE 100 (1650)
Q Consensus 22 ~Y~~~~~~~~l~~~l~~~l~~yN~~~~~~~m~lVlF~~ai~Hv~rI~Ri-l~~p~G~alLvGvgGSGrqSLtrLAafi~~ 100 (1650)
.|++|.-++..++.|.+.+.---. +.+ ...+. ++.|+| +||.|+.|+||.+|+|-.|.-++
T Consensus 146 ~~~dIgGl~~~k~~l~e~v~~Pl~-----------~pe------~f~~~gi~~prG-vLL~GPPGTGKTllAkAiA~e~~ 207 (405)
T 4b4t_J 146 TYDMVGGLTKQIKEIKEVIELPVK-----------HPE------LFESLGIAQPKG-VILYGPPGTGKTLLARAVAHHTD 207 (405)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHH-----------CHH------HHHHHTCCCCCC-EEEESCSSSSHHHHHHHHHHHHT
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHh-----------CHH------HHHhCCCCCCCc-eEEeCCCCCCHHHHHHHHHHhhC
Confidence 478888878777777776543111 122 22232 345555 89999999999999999999999
Q ss_pred CceEEEEEc----ccCCcchhHHHHHHHHHHhccCCCCCEEEEEecCCc
Q psy4724 101 YVLFEIEIL----KTYGLTDWRDDLCRLMKKSGGKDAKPMTFLFSDTQI 145 (1650)
Q Consensus 101 ~~~fqIeit----k~Yg~~~f~eDLk~l~~~~g~~~~k~~vFl~tD~qI 145 (1650)
..++.|..+ +-+|..+ .-++.++..|- ...|++++|.+-+-
T Consensus 208 ~~f~~v~~s~l~sk~vGese--~~vr~lF~~Ar--~~aP~IIFiDEiDa 252 (405)
T 4b4t_J 208 CKFIRVSGAELVQKYIGEGS--RMVRELFVMAR--EHAPSIIFMDEIDS 252 (405)
T ss_dssp CEEEEEEGGGGSCSSTTHHH--HHHHHHHHHHH--HTCSEEEEEESSSC
T ss_pred CCceEEEhHHhhccccchHH--HHHHHHHHHHH--HhCCceEeeecchh
Confidence 999999754 3345553 45778888775 56788887776554
No 63
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=86.52 E-value=11 Score=35.44 Aligned_cols=62 Identities=18% Similarity=0.257 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4724 761 KLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKLERAE 822 (1650)
Q Consensus 761 ~l~~~e~~l~~~~~~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~ 822 (1650)
++..+......+..+....+..+...+.+......++.......+.++.+++.++.+|..|.
T Consensus 10 Km~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~ 71 (101)
T 3u1c_A 10 KMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSE 71 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444455555555555555555555555555555555555555555544444443
No 64
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=86.45 E-value=1.4 Score=51.76 Aligned_cols=88 Identities=8% Similarity=0.105 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHhcCC-CCceEEEecCCchhhhHHHHHHHhc-C----CceEEEEEcccCCcchhHHHHHHHHHHhccC
Q psy4724 58 LYIIQHISRLCRILQQP-KGHAMLITIGGSGAAEVTKLATFMN-E----YVLFEIEILKTYGLTDWRDDLCRLMKKSGGK 131 (1650)
Q Consensus 58 ~~ai~Hv~rI~Ril~~p-~G~alLvGvgGSGrqSLtrLAafi~-~----~~~fqIeitk~Yg~~~f~eDLk~l~~~~g~~ 131 (1650)
+.+++++... +..- -+|.||.|..|+||.+|++..+-.. + ..+..+..+...|..+.++-++.+.......
T Consensus 31 ~~~~~~L~~~---i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~ir~~i~~~~~~~~~~ 107 (340)
T 1sxj_C 31 NEVITTVRKF---VDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGIDVVRNQIKDFASTRQIF 107 (340)
T ss_dssp HHHHHHHHHH---HHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCCSHHHHHTHHHHHHHBCCSS
T ss_pred HHHHHHHHHH---HhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcccccHHHHHHHHHHHHhhcccC
Confidence 5566655443 3332 2579999999999999999766542 1 2355555444456666665554333211112
Q ss_pred CCCCEEEEEecCCcCch
Q psy4724 132 DAKPMTFLFSDTQIQNE 148 (1650)
Q Consensus 132 ~~k~~vFl~tD~qI~~E 148 (1650)
.+++.++++.|.+-...
T Consensus 108 ~~~~~viiiDe~~~l~~ 124 (340)
T 1sxj_C 108 SKGFKLIILDEADAMTN 124 (340)
T ss_dssp SCSCEEEEETTGGGSCH
T ss_pred CCCceEEEEeCCCCCCH
Confidence 24467888888775543
No 65
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=86.13 E-value=10 Score=42.35 Aligned_cols=61 Identities=13% Similarity=0.220 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4724 761 KLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKLERA 821 (1650)
Q Consensus 761 ~l~~~e~~l~~~~~~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra 821 (1650)
.+..++..+......+...+..+..+...+..++..+.....+...++.++.....++...
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (284)
T 1c1g_A 35 RSKQLEDELVSLQKKLKATEDELDKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQLF 95 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333333333333344444443333333333
No 66
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=86.11 E-value=8.7 Score=42.88 Aligned_cols=92 Identities=15% Similarity=0.096 Sum_probs=41.4
Q ss_pred HHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchh
Q psy4724 752 IKIVGPKKAKLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKLERAEKLIGGLGGE 831 (1650)
Q Consensus 752 ~~~v~P~~~~l~~~e~~l~~~~~~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~~Li~~L~~E 831 (1650)
...+.....++..++..+......+...+..+..+...+..+...+.....+...+..++..+...+.....-+..+..+
T Consensus 19 ~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (284)
T 1c1g_A 19 LDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQLFEEE 98 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred hccHHHHHHHHH
Q psy4724 832 KTRWSEASANLS 843 (1650)
Q Consensus 832 ~~rW~~~~~~~~ 843 (1650)
..+....+..+.
T Consensus 99 ~~~~~~~~~~~~ 110 (284)
T 1c1g_A 99 LDRAQERLATAL 110 (284)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444444333333
No 67
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=85.87 E-value=0.93 Score=52.37 Aligned_cols=54 Identities=13% Similarity=0.137 Sum_probs=40.2
Q ss_pred hHHHHHHHHHHHHH------------hcCCCCceEEEecCCchhhhHHHHHHHhcCCceEEEEEcc
Q psy4724 57 FLYIIQHISRLCRI------------LQQPKGHAMLITIGGSGAAEVTKLATFMNEYVLFEIEILK 110 (1650)
Q Consensus 57 F~~ai~Hv~rI~Ri------------l~~p~G~alLvGvgGSGrqSLtrLAafi~~~~~fqIeitk 110 (1650)
-++|++++.+..+- -..+.+|.||+|..|+||.+|+|..+...+..++.+..+.
T Consensus 20 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~ 85 (310)
T 1ofh_A 20 QADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATK 85 (310)
T ss_dssp CHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGG
T ss_pred hHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchh
Confidence 36667666654332 1235679999999999999999988888888888887653
No 68
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=85.67 E-value=1.4 Score=57.53 Aligned_cols=69 Identities=14% Similarity=0.238 Sum_probs=54.6
Q ss_pred CCCCceEEEecCCchhhhHHHHHHHhcCCceEEEEE----cccCCcchhHHHHHHHHHHhccCCCCCEEEEEecCCc
Q psy4724 73 QPKGHAMLITIGGSGAAEVTKLATFMNEYVLFEIEI----LKTYGLTDWRDDLCRLMKKSGGKDAKPMTFLFSDTQI 145 (1650)
Q Consensus 73 ~p~G~alLvGvgGSGrqSLtrLAafi~~~~~fqIei----tk~Yg~~~f~eDLk~l~~~~g~~~~k~~vFl~tD~qI 145 (1650)
.|..++||.|+.|+||.+|+|..|.-++..+|.|.. ++.+|.. -..++.++..|- .+.|++++|.+-+.
T Consensus 236 ~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk~~ges--e~~lr~lF~~A~--~~~PsIIfIDEiDa 308 (806)
T 3cf2_A 236 KPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGES--ESNLRKAFEEAE--KNAPAIIFIDELDA 308 (806)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSSCTTHH--HHHHHHHHHHHT--TSCSEEEEEESGGG
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhcccchHH--HHHHHHHHHHHH--HcCCeEEEEehhcc
Confidence 345569999999999999999999999999999863 4556655 456888888775 67899888877553
No 69
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=85.52 E-value=6.5 Score=36.20 Aligned_cols=63 Identities=16% Similarity=0.201 Sum_probs=40.1
Q ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4724 754 IVGPKKAKLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQK 817 (1650)
Q Consensus 754 ~v~P~~~~l~~~e~~l~~~~~~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~r 817 (1650)
.|+|+- .....+..+......+...+..+...+.....|...+....+++..|..+...++.+
T Consensus 2 kVKPLL-~~~~~eeEm~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~ql~eaEe~ 64 (89)
T 3bas_A 2 SHMPLL-SIARQEEEMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGSMKQLEDK 64 (89)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCccc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 466765 345666677777777777777777777888888888888888888887774333333
No 70
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=85.52 E-value=0.54 Score=51.97 Aligned_cols=76 Identities=13% Similarity=-0.039 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHhcCCCCceEEEecCCchhhhHHHHHHHhc---CCceEEEEEcccCCcchhHHHHHHHHHHhccCCCCC
Q psy4724 59 YIIQHISRLCRILQQPKGHAMLITIGGSGAAEVTKLATFMN---EYVLFEIEILKTYGLTDWRDDLCRLMKKSGGKDAKP 135 (1650)
Q Consensus 59 ~ai~Hv~rI~Ril~~p~G~alLvGvgGSGrqSLtrLAafi~---~~~~fqIeitk~Yg~~~f~eDLk~l~~~~g~~~~k~ 135 (1650)
.+++.+.+.... .+.++.+|+|..|+||.+|++..+.-. ++.+..+... ++.+.+...+... +++
T Consensus 38 ~~~~~l~~~~~~--~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~----~~~ 105 (242)
T 3bos_A 38 ELIGALKSAASG--DGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLG------IHASISTALLEGL----EQF 105 (242)
T ss_dssp HHHHHHHHHHHT--CSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGG------GGGGSCGGGGTTG----GGS
T ss_pred HHHHHHHHHHhC--CCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHH------HHHHHHHHHHHhc----cCC
Confidence 455544444332 256789999999999999987655443 3556555443 2222222222211 345
Q ss_pred EEEEEecCCcC
Q psy4724 136 MTFLFSDTQIQ 146 (1650)
Q Consensus 136 ~vFl~tD~qI~ 146 (1650)
.++++.|-+-.
T Consensus 106 ~vliiDe~~~~ 116 (242)
T 3bos_A 106 DLICIDDVDAV 116 (242)
T ss_dssp SEEEEETGGGG
T ss_pred CEEEEeccccc
Confidence 67788886654
No 71
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=85.36 E-value=16 Score=36.09 Aligned_cols=78 Identities=18% Similarity=0.282 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhccHHHHHHHHHHHHhhc
Q psy4724 772 QMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKLERAEKLIGGLGGEKTRWSEASANLSKALVNC 849 (1650)
Q Consensus 772 ~~~~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~~Li~~L~~E~~rW~~~~~~~~~~~~~l 849 (1650)
.....+..+.+|+.-.+.++.....++.....+..|+..+..++.+++--+.....|..++.+=...+..++..+..+
T Consensus 46 l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~ 123 (129)
T 2fxo_A 46 LLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDL 123 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444455555555666666677777788888888888888888888888888888888888888877776543
No 72
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=85.30 E-value=1.2 Score=45.04 Aligned_cols=97 Identities=14% Similarity=0.108 Sum_probs=56.6
Q ss_pred ceeehHHHHHHHHHHHHHhcCCCCceEEEecCCchhhhHHHHHHHhcCCceEEEEEcccCCcchhHHH-HHHHHHHhccC
Q psy4724 53 DIVTFLYIIQHISRLCRILQQPKGHAMLITIGGSGAAEVTKLATFMNEYVLFEIEILKTYGLTDWRDD-LCRLMKKSGGK 131 (1650)
Q Consensus 53 ~lVlF~~ai~Hv~rI~Ril~~p~G~alLvGvgGSGrqSLtrLAafi~~~~~fqIeitk~Yg~~~f~eD-Lk~l~~~~g~~ 131 (1650)
++|=-..+++.+.+..+.......|+||.|..|+||.+++|.-+..++ .++.+ +..++.++ ++.++..+.
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~------~~~~~~~~~~~~~~~~a~-- 75 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNGT-PWVSP------ARVEYLIDMPMELLQKAE-- 75 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTTS-CEECC------SSTTHHHHCHHHHHHHTT--
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCC-CeEEe------chhhCChHhhhhHHHhCC--
Confidence 344446677777776655556678999999999999998876655444 22222 22333333 334455443
Q ss_pred CCCCEEEEEecCCcCchhhHHHHHHHHhhh
Q psy4724 132 DAKPMTFLFSDTQIQNEVFVEHINMLLNTA 161 (1650)
Q Consensus 132 ~~k~~vFl~tD~qI~~E~fLedIN~lL~tg 161 (1650)
+ .++++.|-+-........+-.+|..+
T Consensus 76 -~--~~l~lDei~~l~~~~q~~Ll~~l~~~ 102 (143)
T 3co5_A 76 -G--GVLYVGDIAQYSRNIQTGITFIIGKA 102 (143)
T ss_dssp -T--SEEEEEECTTCCHHHHHHHHHHHHHH
T ss_pred -C--CeEEEeChHHCCHHHHHHHHHHHHhC
Confidence 2 24556776665555555555555554
No 73
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=85.29 E-value=11 Score=37.28 Aligned_cols=93 Identities=20% Similarity=0.252 Sum_probs=66.4
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhcc
Q psy4724 755 VGPKKAKLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKLERAEKLIGGLGGEKTR 834 (1650)
Q Consensus 755 v~P~~~~l~~~e~~l~~~~~~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~~Li~~L~~E~~r 834 (1650)
|+|+- .....+..+......+...+..+...+.....|...+....+++..|..+++.-...+.-|+.....|...+..
T Consensus 2 vKPLL-~~~~~e~E~~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~e 80 (129)
T 2fxo_A 2 SSPLL-KSAEREKEMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQ 80 (129)
T ss_dssp CHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCch-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 56665 34555666777777777777778778888888888888888888888888877777777777777777666655
Q ss_pred HHHHHHHHHHHHhh
Q psy4724 835 WSEASANLSKALVN 848 (1650)
Q Consensus 835 W~~~~~~~~~~~~~ 848 (1650)
=...+..+..++..
T Consensus 81 Le~~l~el~~rlee 94 (129)
T 2fxo_A 81 LEAKVKEMNKRLED 94 (129)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 55555555555443
No 74
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=85.29 E-value=1.6 Score=54.00 Aligned_cols=87 Identities=13% Similarity=0.200 Sum_probs=59.3
Q ss_pred ceeehHHHHHHHHHHHHHh-----------cCCCCceEEEecCCchhhhHHHHHHHhcCCceEEEEEc---ccCCcchhH
Q psy4724 53 DIVTFLYIIQHISRLCRIL-----------QQPKGHAMLITIGGSGAAEVTKLATFMNEYVLFEIEIL---KTYGLTDWR 118 (1650)
Q Consensus 53 ~lVlF~~ai~Hv~rI~Ril-----------~~p~G~alLvGvgGSGrqSLtrLAafi~~~~~fqIeit---k~Yg~~~f~ 118 (1650)
+++=-+.+++.+.+..+.. ..|..++||.|..|+||.+|+|..+.-.+..++.+... ..|- .+..
T Consensus 205 ~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~~-g~~~ 283 (489)
T 3hu3_A 205 DIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLA-GESE 283 (489)
T ss_dssp GCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSCT-THHH
T ss_pred HcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhhc-chhH
Confidence 4555677777776654432 34556799999999999999999988888888888633 2221 2334
Q ss_pred HHHHHHHHHhccCCCCCEEEEEec
Q psy4724 119 DDLCRLMKKSGGKDAKPMTFLFSD 142 (1650)
Q Consensus 119 eDLk~l~~~~g~~~~k~~vFl~tD 142 (1650)
..++.++..+. .+.|.+++|.|
T Consensus 284 ~~~~~~f~~A~--~~~p~iLfLDE 305 (489)
T 3hu3_A 284 SNLRKAFEEAE--KNAPAIIFIDE 305 (489)
T ss_dssp HHHHHHHHHHH--HTCSEEEEEES
T ss_pred HHHHHHHHHHH--hcCCcEEEecc
Confidence 56777787765 35676655544
No 75
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=84.96 E-value=1 Score=59.35 Aligned_cols=89 Identities=11% Similarity=0.206 Sum_probs=58.8
Q ss_pred ceeehHHHHHHHHHHHHHhc-CCCCceEEEecCCchhhhHHHHHHHhc----------CCceEEEEEcc----cCCcchh
Q psy4724 53 DIVTFLYIIQHISRLCRILQ-QPKGHAMLITIGGSGAAEVTKLATFMN----------EYVLFEIEILK----TYGLTDW 117 (1650)
Q Consensus 53 ~lVlF~~ai~Hv~rI~Ril~-~p~G~alLvGvgGSGrqSLtrLAafi~----------~~~~fqIeitk----~Yg~~~f 117 (1650)
++|=-+..+..+. ++|. .+..|.||+|..|+||.+|++..+-.. ++.++.+.... .....+|
T Consensus 187 ~~iGr~~~i~~l~---~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~~~~~~g~~ 263 (758)
T 1r6b_X 187 PLIGREKELERAI---QVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDF 263 (758)
T ss_dssp CCCSCHHHHHHHH---HHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---CCCCCSSCH
T ss_pred CccCCHHHHHHHH---HHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHhccccccchH
Confidence 3444555665544 4443 456799999999999999997655432 56677665432 1123467
Q ss_pred HHHHHHHHHHhccCCCCCEEEEEecCCcC
Q psy4724 118 RDDLCRLMKKSGGKDAKPMTFLFSDTQIQ 146 (1650)
Q Consensus 118 ~eDLk~l~~~~g~~~~k~~vFl~tD~qI~ 146 (1650)
.+.++.++..+. ..++.++++.|-+-.
T Consensus 264 e~~l~~~~~~~~--~~~~~iL~IDEi~~l 290 (758)
T 1r6b_X 264 EKRFKALLKQLE--QDTNSILFIDEIHTI 290 (758)
T ss_dssp HHHHHHHHHHHS--SSSCEEEEETTTTTT
T ss_pred HHHHHHHHHHHH--hcCCeEEEEechHHH
Confidence 888988887765 345677778887754
No 76
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=84.91 E-value=1.3 Score=54.30 Aligned_cols=91 Identities=15% Similarity=0.145 Sum_probs=54.0
Q ss_pred HHHHHHhcCCC--CceEEEecCCchhhhHHHHHHHhc-----CCceEEEEEcccCCcchhHHHHHHHHHHhc------cC
Q psy4724 65 SRLCRILQQPK--GHAMLITIGGSGAAEVTKLATFMN-----EYVLFEIEILKTYGLTDWRDDLCRLMKKSG------GK 131 (1650)
Q Consensus 65 ~rI~Ril~~p~--G~alLvGvgGSGrqSLtrLAafi~-----~~~~fqIeitk~Yg~~~f~eDLk~l~~~~g------~~ 131 (1650)
..+.++...|+ .+.+|.|..|+||.+|++.-+... +..+..+... +|..++...+.... ..
T Consensus 118 ~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~------~~~~~~~~~~~~~~~~~~~~~~ 191 (440)
T 2z4s_A 118 HAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSE------KFLNDLVDSMKEGKLNEFREKY 191 (440)
T ss_dssp HHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHH------HHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHH------HHHHHHHHHHHcccHHHHHHHh
Confidence 34445556665 589999999999999998776654 5666665432 34444432222110 01
Q ss_pred CCCCEEEEEecCCcCc------hhhHHHHHHHHhhh
Q psy4724 132 DAKPMTFLFSDTQIQN------EVFVEHINMLLNTA 161 (1650)
Q Consensus 132 ~~k~~vFl~tD~qI~~------E~fLedIN~lL~tg 161 (1650)
..++.++++.|-|-.. +.|+..+|.+...|
T Consensus 192 ~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~ 227 (440)
T 2z4s_A 192 RKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSG 227 (440)
T ss_dssp TTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTT
T ss_pred cCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCC
Confidence 1256788888876433 34566666665544
No 77
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=84.84 E-value=12 Score=35.13 Aligned_cols=82 Identities=16% Similarity=0.180 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhhhchhhccHHHH
Q psy4724 761 KLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQK--LERAEKLIGGLGGEKTRWSEA 838 (1650)
Q Consensus 761 ~l~~~e~~l~~~~~~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~r--l~ra~~Li~~L~~E~~rW~~~ 838 (1650)
.+..+..+|..+++.|+.++..+.++.+.+++++...+ ...-|+.+++.-... .+|+.+ .-+.+|+.+-..+
T Consensus 25 ei~~L~~~L~~AEeaL~~Kq~~idelk~ei~q~~~~lE----~I~vLkaQv~IY~~DF~aERadR--Ekl~~eKe~L~~q 98 (110)
T 2v4h_A 25 QLEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVME----TVPVLKAQADIYKADFQAERHAR--EKLVEKKEYLQEQ 98 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHccchhhH--HHHHhHHHHHHHH
Confidence 44555555555555555566666665555555444332 233333333333322 223222 4455556666666
Q ss_pred HHHHHHHHhh
Q psy4724 839 SANLSKALVN 848 (1650)
Q Consensus 839 ~~~~~~~~~~ 848 (1650)
+..+..+...
T Consensus 99 l~~Lq~q~~~ 108 (110)
T 2v4h_A 99 LEQLQREFNK 108 (110)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHHh
Confidence 6665555443
No 78
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=84.72 E-value=2.9 Score=47.11 Aligned_cols=100 Identities=7% Similarity=0.086 Sum_probs=61.5
Q ss_pred hHHHHHHHHHHHHHhcCCCCceEEEecCCchhhhHHHHHHHhcC---CceEEEEEcccCCcchhHHHHH-----------
Q psy4724 57 FLYIIQHISRLCRILQQPKGHAMLITIGGSGAAEVTKLATFMNE---YVLFEIEILKTYGLTDWRDDLC----------- 122 (1650)
Q Consensus 57 F~~ai~Hv~rI~Ril~~p~G~alLvGvgGSGrqSLtrLAafi~~---~~~fqIeitk~Yg~~~f~eDLk----------- 122 (1650)
-..++..+.+..+.+....++.||.|..|+||.+|+|..+.... ..++.|..+ .+....+...|-
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~-~~~~~~~~~~l~g~~~~~~~g~~ 89 (265)
T 2bjv_A 11 EANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA-ALNENLLDSELFGHEAGAFTGAQ 89 (265)
T ss_dssp CCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGG-GSCHHHHHHHHHCCC--------
T ss_pred CCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecC-CCChhHHHHHhcCCccccccccc
Confidence 35677777665554445568999999999999999988777654 445555433 333222222220
Q ss_pred ----HHHHHhccCCCCCEEEEEecCCcCchhhHHHHHHHHhhhh
Q psy4724 123 ----RLMKKSGGKDAKPMTFLFSDTQIQNEVFVEHINMLLNTAR 162 (1650)
Q Consensus 123 ----~l~~~~g~~~~k~~vFl~tD~qI~~E~fLedIN~lL~tge 162 (1650)
..+..+ ...++++.|-+-......+.+..+|+.|.
T Consensus 90 ~~~~~~l~~a-----~~~~l~lDEi~~l~~~~q~~Ll~~l~~~~ 128 (265)
T 2bjv_A 90 KRHPGRFERA-----DGGTLFLDELATAPMMVQEKLLRVIEYGE 128 (265)
T ss_dssp -CCCCHHHHT-----TTSEEEEESGGGSCHHHHHHHHHHHHHCE
T ss_pred ccccchhhhc-----CCcEEEEechHhcCHHHHHHHHHHHHhCC
Confidence 011111 12477788888777767777777777653
No 79
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=84.39 E-value=16 Score=34.41 Aligned_cols=62 Identities=24% Similarity=0.315 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4724 761 KLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKLERAE 822 (1650)
Q Consensus 761 ~l~~~e~~l~~~~~~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~ 822 (1650)
+.+.++..+..+.........++..+..++..++.+++.+..........++....+...|+
T Consensus 24 ~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE 85 (101)
T 3u59_A 24 RAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAE 85 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444444444444444444444333333333333333
No 80
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=84.33 E-value=9.9 Score=33.93 Aligned_cols=47 Identities=17% Similarity=0.307 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4724 762 LAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELE 808 (1650)
Q Consensus 762 l~~~e~~l~~~~~~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~ 808 (1650)
++.++++...+-+...-.+.++.++.++-..|..+.+++....+.|.
T Consensus 8 leqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~ 54 (81)
T 2jee_A 8 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELE 54 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 34444444444444444444444444444444444444333333333
No 81
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=84.32 E-value=6.1 Score=35.27 Aligned_cols=67 Identities=13% Similarity=0.276 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhccHHHHHHH
Q psy4724 775 KLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKLERAEKLIGGLGGEKTRWSEASAN 841 (1650)
Q Consensus 775 ~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~~Li~~L~~E~~rW~~~~~~ 841 (1650)
-|...+++++..-+.++-|+.++++...+...|..+.+.+...-+.-..=...|..|+..|...+..
T Consensus 7 lleqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~ 73 (81)
T 2jee_A 7 VFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQA 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666666666666666666666666666555443333333334444444555544443
No 82
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=83.82 E-value=0.92 Score=54.06 Aligned_cols=37 Identities=16% Similarity=0.140 Sum_probs=33.0
Q ss_pred CCCCceEEEecCCchhhhHHHHHHHhcCCceEEEEEc
Q psy4724 73 QPKGHAMLITIGGSGAAEVTKLATFMNEYVLFEIEIL 109 (1650)
Q Consensus 73 ~p~G~alLvGvgGSGrqSLtrLAafi~~~~~fqIeit 109 (1650)
.|.+|+||+|..|+||.+++|.-|-..+..++.+..+
T Consensus 49 ~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~ 85 (363)
T 3hws_A 49 LGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADAT 85 (363)
T ss_dssp CCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechH
Confidence 3788999999999999999999998889888888655
No 83
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=83.73 E-value=2.4 Score=49.83 Aligned_cols=103 Identities=8% Similarity=0.067 Sum_probs=57.7
Q ss_pred ceeehHHHHHHHHHHHHHhcCC-CCceEEEecCCchhhhHHHHHHHhcC------CceEEEEEcccCCcchhHHHHHHHH
Q psy4724 53 DIVTFLYIIQHISRLCRILQQP-KGHAMLITIGGSGAAEVTKLATFMNE------YVLFEIEILKTYGLTDWRDDLCRLM 125 (1650)
Q Consensus 53 ~lVlF~~ai~Hv~rI~Ril~~p-~G~alLvGvgGSGrqSLtrLAafi~~------~~~fqIeitk~Yg~~~f~eDLk~l~ 125 (1650)
++|--+++++++.+. +... .+|.||.|+.|+||.+|++..+-..+ ..+..+..+..-+...+++.+...-
T Consensus 38 ~i~g~~~~~~~l~~~---l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (353)
T 1sxj_D 38 EVTAQDHAVTVLKKT---LKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIVREKVKNFA 114 (353)
T ss_dssp TCCSCCTTHHHHHHH---TTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHHTTHHHHHH
T ss_pred HhhCCHHHHHHHHHH---HhcCCCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHHHHHHHHHHh
Confidence 456556666655443 4443 36899999999999999976554422 2455554443345556665554332
Q ss_pred HHh----------ccCCCCCEEEEEecCCcCchhhHHHHHHHH
Q psy4724 126 KKS----------GGKDAKPMTFLFSDTQIQNEVFVEHINMLL 158 (1650)
Q Consensus 126 ~~~----------g~~~~k~~vFl~tD~qI~~E~fLedIN~lL 158 (1650)
... +...+.+.++++.|.+-........+..++
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~l 157 (353)
T 1sxj_D 115 RLTVSKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTM 157 (353)
T ss_dssp HSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHH
T ss_pred hhcccccchhhcccCCCCCceEEEEECCCccCHHHHHHHHHHH
Confidence 211 111234567777776655443333333333
No 84
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=83.62 E-value=0.91 Score=59.89 Aligned_cols=84 Identities=18% Similarity=0.290 Sum_probs=53.6
Q ss_pred ceeehHHHHHHHHHHHHHhcCCCCceEEEecCCchhhhHHHHHHHh----------cCCceEEEEEcccCCcchhHHHHH
Q psy4724 53 DIVTFLYIIQHISRLCRILQQPKGHAMLITIGGSGAAEVTKLATFM----------NEYVLFEIEILKTYGLTDWRDDLC 122 (1650)
Q Consensus 53 ~lVlF~~ai~Hv~rI~Ril~~p~G~alLvGvgGSGrqSLtrLAafi----------~~~~~fqIeitk~Yg~~~f~eDLk 122 (1650)
++|=-++.++.+..+.. +...+|.||+|..|+||.++++.-|.. .++.++.+.....| .-+|.+.++
T Consensus 181 ~iiG~~~~i~~l~~~l~--~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~g~~~-~G~~e~~l~ 257 (758)
T 3pxi_A 181 PVIGRSKEIQRVIEVLS--RRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTKY-RGEFEDRLK 257 (758)
T ss_dssp CCCCCHHHHHHHHHHHH--CSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-----------CTTHH
T ss_pred CccCchHHHHHHHHHHh--CCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecccccc-cchHHHHHH
Confidence 57778888887665532 355679999999999999999876655 37788877762222 235666788
Q ss_pred HHHHHhccCCCCCEEEEEec
Q psy4724 123 RLMKKSGGKDAKPMTFLFSD 142 (1650)
Q Consensus 123 ~l~~~~g~~~~k~~vFl~tD 142 (1650)
.++..+. . .++.+ ||-|
T Consensus 258 ~~~~~~~-~-~~~~i-LfiD 274 (758)
T 3pxi_A 258 KVMDEIR-Q-AGNII-LFID 274 (758)
T ss_dssp HHHHHHH-T-CCCCE-EEEC
T ss_pred HHHHHHH-h-cCCEE-EEEc
Confidence 8887765 2 44444 4445
No 85
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=83.51 E-value=1.1 Score=54.93 Aligned_cols=88 Identities=14% Similarity=0.197 Sum_probs=56.2
Q ss_pred ceeehHHHHHHHHHHHH-------H---hcCCCCceEEEecCCchhhhHHHHHHHhc-CCceEEEEEccc----CCcchh
Q psy4724 53 DIVTFLYIIQHISRLCR-------I---LQQPKGHAMLITIGGSGAAEVTKLATFMN-EYVLFEIEILKT----YGLTDW 117 (1650)
Q Consensus 53 ~lVlF~~ai~Hv~rI~R-------i---l~~p~G~alLvGvgGSGrqSLtrLAafi~-~~~~fqIeitk~----Yg~~~f 117 (1650)
+++=.+++.+.+.++.. . ...|..+.||.|+.|+||.+|+|..|.-+ +..++.+..+.- .|..
T Consensus 135 di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~~~~~g~~-- 212 (444)
T 2zan_A 135 DVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGES-- 212 (444)
T ss_dssp GSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC---------C--
T ss_pred HhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHHhhhcchH--
Confidence 46666777777776541 1 14567889999999999999998877766 777777754321 1211
Q ss_pred HHHHHHHHHHhccCCCCCEEEEEecCC
Q psy4724 118 RDDLCRLMKKSGGKDAKPMTFLFSDTQ 144 (1650)
Q Consensus 118 ~eDLk~l~~~~g~~~~k~~vFl~tD~q 144 (1650)
...++.++..+. ..+|.|++|.|-+
T Consensus 213 ~~~~~~~f~~a~--~~~~~vl~iDEid 237 (444)
T 2zan_A 213 EKLVKNLFQLAR--ENKPSIIFIDEID 237 (444)
T ss_dssp CCTHHHHHHHHH--HSCSEEEEESCTT
T ss_pred HHHHHHHHHHHH--HcCCeEEEEechH
Confidence 122445555554 3467777777655
No 86
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=83.20 E-value=3 Score=49.46 Aligned_cols=95 Identities=16% Similarity=0.181 Sum_probs=55.1
Q ss_pred ceeehHHHHHHHHHHHHHhcCCCCce-EEEecCCchhhhHHHHHHHhcCC------------------------ceEEEE
Q psy4724 53 DIVTFLYIIQHISRLCRILQQPKGHA-MLITIGGSGAAEVTKLATFMNEY------------------------VLFEIE 107 (1650)
Q Consensus 53 ~lVlF~~ai~Hv~rI~Ril~~p~G~a-lLvGvgGSGrqSLtrLAafi~~~------------------------~~fqIe 107 (1650)
++|--+.+++.+.+..+- ...+|+ ||.|..|+||.+|++..+--.++ +++.+.
T Consensus 17 ~~vg~~~~~~~L~~~l~~--~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (373)
T 1jr3_A 17 DVVGQEHVLTALANGLSL--GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEID 94 (373)
T ss_dssp TSCSCHHHHHHHHHHHHH--TCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHHHHTSCCSSCEEEE
T ss_pred hccCcHHHHHHHHHHHHh--CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhccCCCceEEec
Confidence 455556666655544321 122464 89999999999998865543332 355555
Q ss_pred EcccCCcchhHHHHHHHHHHhccCCCCCEEEEEecCCcCchhhH
Q psy4724 108 ILKTYGLTDWRDDLCRLMKKSGGKDAKPMTFLFSDTQIQNEVFV 151 (1650)
Q Consensus 108 itk~Yg~~~f~eDLk~l~~~~g~~~~k~~vFl~tD~qI~~E~fL 151 (1650)
....-+..++++-+ ..+.... ..+++.|+++.|.|-.+....
T Consensus 95 ~~~~~~~~~~~~l~-~~~~~~~-~~~~~~vliiDe~~~l~~~~~ 136 (373)
T 1jr3_A 95 AASRTKVEDTRDLL-DNVQYAP-ARGRFKVYLIDEVHMLSRHSF 136 (373)
T ss_dssp TTCSCCSSCHHHHH-HHTTSCC-SSSSSEEEEEECGGGSCHHHH
T ss_pred ccccCCHHHHHHHH-HHHhhcc-ccCCeEEEEEECcchhcHHHH
Confidence 44334445544422 2222222 346788999999887665433
No 87
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=82.96 E-value=1.4 Score=50.74 Aligned_cols=67 Identities=7% Similarity=-0.016 Sum_probs=45.0
Q ss_pred ceEEEecCCchhhhHHHHHHHhcCCceEEEEEcc----cCCcchhHHHHHHHHHHhcc--CCCCCEEEEEecCCc
Q psy4724 77 HAMLITIGGSGAAEVTKLATFMNEYVLFEIEILK----TYGLTDWRDDLCRLMKKSGG--KDAKPMTFLFSDTQI 145 (1650)
Q Consensus 77 ~alLvGvgGSGrqSLtrLAafi~~~~~fqIeitk----~Yg~~~f~eDLk~l~~~~g~--~~~k~~vFl~tD~qI 145 (1650)
.+||.|+.|+||.+|+|..|.-.+..++.+..+. ..|.. -..++.++..|.. ..+.|.|++|.|-+-
T Consensus 38 ~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~--~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~ 110 (293)
T 3t15_A 38 ILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEP--AKLIRQRYREAAEIIRKGNMCCLFINDLDA 110 (293)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HH--HHHHHHHHHHHHHHHTTSSCCCEEEECCC-
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchh--HHHHHHHHHHHHHHHhcCCCeEEEEechhh
Confidence 4778899999999999988877799999887442 12222 2345566766610 145778888887653
No 88
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=82.43 E-value=10 Score=35.75 Aligned_cols=86 Identities=20% Similarity=0.216 Sum_probs=49.5
Q ss_pred chhhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4724 740 FQVLAMEVYDRVIKIVGPKKAKLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKLE 819 (1650)
Q Consensus 740 ~Wv~A~~~Y~~v~~~v~P~~~~l~~~e~~l~~~~~~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ 819 (1650)
...+|..+-.++-.- ++.+|..++..+..++++-......+..+.+.|...+.+- ..+.++|+.++.....+|+
T Consensus 15 dGLrAq~ECrN~T~l---Lq~qLTqAQe~l~~~eaQAaTCNqTV~tL~~SL~~ekaq~---q~~vqeLqgEI~~Lnq~Lq 88 (121)
T 3mq7_A 15 DGLRAVMEARNVTHL---LQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQG---QKKVEELEGEITTLNHKLQ 88 (121)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 566666666555443 3455666666666555555555555555555554444443 2336677777777777777
Q ss_pred HHHHHHhhhchh
Q psy4724 820 RAEKLIGGLGGE 831 (1650)
Q Consensus 820 ra~~Li~~L~~E 831 (1650)
-|..=+.-|..+
T Consensus 89 ~a~ae~erlr~~ 100 (121)
T 3mq7_A 89 DASAEVERLRRE 100 (121)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh
Confidence 666655554433
No 89
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=82.08 E-value=3 Score=48.91 Aligned_cols=92 Identities=15% Similarity=0.248 Sum_probs=56.3
Q ss_pred HHHHHHHhcCCC-Cc-eEEEecCCchhhhHHHHHH-Hh-cC----------------------CceEEEEEc---ccCCc
Q psy4724 64 ISRLCRILQQPK-GH-AMLITIGGSGAAEVTKLAT-FM-NE----------------------YVLFEIEIL---KTYGL 114 (1650)
Q Consensus 64 v~rI~Ril~~p~-G~-alLvGvgGSGrqSLtrLAa-fi-~~----------------------~~~fqIeit---k~Yg~ 114 (1650)
+.++.+.++..+ +| .||.|..|+||.++++.-| .+ +. .++..+... +..+.
T Consensus 11 ~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~~~~i 90 (334)
T 1a5t_A 11 FEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKGKNTLGV 90 (334)
T ss_dssp HHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTTCSSBCH
T ss_pred HHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccccCCCCCH
Confidence 345555666554 56 6888999999999988654 33 22 245556543 34555
Q ss_pred chhHHHHHHHHHHhcc--CCCCCEEEEEecCCcCchhhHHHHHHHHhhhh
Q psy4724 115 TDWRDDLCRLMKKSGG--KDAKPMTFLFSDTQIQNEVFVEHINMLLNTAR 162 (1650)
Q Consensus 115 ~~f~eDLk~l~~~~g~--~~~k~~vFl~tD~qI~~E~fLedIN~lL~tge 162 (1650)
.+.| .+...+.. ..++..|+++.|.+-... +-.|.||.+=|
T Consensus 91 ~~ir----~l~~~~~~~~~~~~~kvviIdead~l~~---~a~naLLk~lE 133 (334)
T 1a5t_A 91 DAVR----EVTEKLNEHARLGGAKVVWVTDAALLTD---AAANALLKTLE 133 (334)
T ss_dssp HHHH----HHHHHTTSCCTTSSCEEEEESCGGGBCH---HHHHHHHHHHT
T ss_pred HHHH----HHHHHHhhccccCCcEEEEECchhhcCH---HHHHHHHHHhc
Confidence 4444 44443321 246778899999886554 34577776643
No 90
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=81.39 E-value=1.2 Score=48.02 Aligned_cols=33 Identities=12% Similarity=0.067 Sum_probs=24.3
Q ss_pred CCCC-ceEEEecCCchhhhHHHHHHHhcCCceEE
Q psy4724 73 QPKG-HAMLITIGGSGAAEVTKLATFMNEYVLFE 105 (1650)
Q Consensus 73 ~p~G-~alLvGvgGSGrqSLtrLAafi~~~~~fq 105 (1650)
++.| +..|+|+.||||.|+++.-+-..|+.++.
T Consensus 22 ~~~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~ 55 (199)
T 3vaa_A 22 SNAMVRIFLTGYMGAGKTTLGKAFARKLNVPFID 55 (199)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEE
T ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEc
Confidence 3344 88999999999999998776555665543
No 91
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=81.03 E-value=11 Score=37.62 Aligned_cols=24 Identities=8% Similarity=0.113 Sum_probs=9.4
Q ss_pred hhHHHHHHHHHHhcchHHHHHHHH
Q psy4724 742 VLAMEVYDRVIKIVGPKKAKLAEA 765 (1650)
Q Consensus 742 v~A~~~Y~~v~~~v~P~~~~l~~~ 765 (1650)
+.....|......+.-++..+++.
T Consensus 64 LNiadEl~k~~~~~~~L~~~l~~~ 87 (138)
T 3hnw_A 64 LNIADDYFKAKKMADSLSLDIENK 87 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444544433333333333333
No 92
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=80.77 E-value=14 Score=36.99 Aligned_cols=54 Identities=15% Similarity=0.167 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4724 767 ADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKLER 820 (1650)
Q Consensus 767 ~~l~~~~~~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~r 820 (1650)
...+..+.++.....++..+...+..++.+++.+.++.++|+.++..++.++.+
T Consensus 75 ~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~ 128 (138)
T 3hnw_A 75 KMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVK 128 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444455555555555555555555555555555444433
No 93
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=78.87 E-value=3.7 Score=47.94 Aligned_cols=52 Identities=15% Similarity=0.155 Sum_probs=39.2
Q ss_pred eeehHHHHHHHHHHHHHhcCCCCceEEEecCCchhhhHHHHHHHhcCCceEEEEEc
Q psy4724 54 IVTFLYIIQHISRLCRILQQPKGHAMLITIGGSGAAEVTKLATFMNEYVLFEIEIL 109 (1650)
Q Consensus 54 lVlF~~ai~Hv~rI~Ril~~p~G~alLvGvgGSGrqSLtrLAafi~~~~~fqIeit 109 (1650)
+|=-+++++.+..... . ++|+||+|..|+||.+|+|..+...+..++.+..+
T Consensus 29 i~g~~~~~~~l~~~l~---~-~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~ 80 (331)
T 2r44_A 29 VVGQKYMINRLLIGIC---T-GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFT 80 (331)
T ss_dssp CCSCHHHHHHHHHHHH---H-TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred eeCcHHHHHHHHHHHH---c-CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecC
Confidence 4445666665544332 2 68999999999999999998888888888777654
No 94
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=78.63 E-value=9.6 Score=51.61 Aligned_cols=77 Identities=19% Similarity=0.324 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhccHHHHHHHHHHHH
Q psy4724 767 ADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKLERAEKLIGGLGGEKTRWSEASANLSKAL 846 (1650)
Q Consensus 767 ~~l~~~~~~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~~Li~~L~~E~~rW~~~~~~~~~~~ 846 (1650)
++++..+.++...+.++..++++++.+++++++...+++.+++..+.++.+|+ ..++.|..|...=.+++++++...
T Consensus 970 ~~le~~~~e~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~---~kv~~L~~e~~~L~qq~~~l~~~~ 1046 (1080)
T 2dfs_A 970 ERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETE---QLVSELKEQNTLLKTEKEELNRRI 1046 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444566666677788888899999999999999999999888888876554 777788888777777777766433
No 95
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=78.32 E-value=28 Score=31.82 Aligned_cols=86 Identities=15% Similarity=0.140 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhhhchhhccHHHHH
Q psy4724 762 LAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQ--KLERAEKLIGGLGGEKTRWSEAS 839 (1650)
Q Consensus 762 l~~~e~~l~~~~~~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~--rl~ra~~Li~~L~~E~~rW~~~~ 839 (1650)
+..+...|..+++.|..++..+.++.+.++..+...+. ..-|+.+++.-.. .-+||.+ .-+.+|+.+-...+
T Consensus 4 ~~~L~~~L~~aEeaL~~kq~~id~lke~~~q~~~~~E~----i~vLk~Qv~IY~~DF~aERadR--Ekl~~eKe~L~~ql 77 (94)
T 3jsv_C 4 LEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMET----VPVLKAQADIYKADFQAERHAR--EKLVEKKEYLQEQL 77 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH--HHHHHTTSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH--HHHHhHHHHHHHHH
Confidence 45566667777777777777777777766666644422 2334444433332 2234433 56677888888888
Q ss_pred HHHHHHHhhchhHH
Q psy4724 840 ANLSKALVNCIGDI 853 (1650)
Q Consensus 840 ~~~~~~~~~l~Gd~ 853 (1650)
..+..+...|..++
T Consensus 78 ~~lq~q~~~L~~~~ 91 (94)
T 3jsv_C 78 EQLQREFNKLKVGC 91 (94)
T ss_dssp HHHHHTTC------
T ss_pred HHHHHHHHHHHHhh
Confidence 88888777765544
No 96
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=78.15 E-value=2.3 Score=56.25 Aligned_cols=69 Identities=12% Similarity=0.180 Sum_probs=49.5
Q ss_pred CCCCceEEEecCCchhhhHHHHHHHhcCCceEEEEEcc--cCCcchhHHHHHHHHHHhccCCCCCEEEEEecC
Q psy4724 73 QPKGHAMLITIGGSGAAEVTKLATFMNEYVLFEIEILK--TYGLTDWRDDLCRLMKKSGGKDAKPMTFLFSDT 143 (1650)
Q Consensus 73 ~p~G~alLvGvgGSGrqSLtrLAafi~~~~~fqIeitk--~Yg~~~f~eDLk~l~~~~g~~~~k~~vFl~tD~ 143 (1650)
.|..+.||+|..||||.+|+|..+-..+..++.+.-.. +....++...++.++..+- .+.|.++++.|-
T Consensus 236 ~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~--~~~p~il~iDEi 306 (806)
T 1ypw_A 236 KPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAE--KNAPAIIFIDEL 306 (806)
T ss_dssp CCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSSSSTTHHHHHHHHHHHHHH--HHCSEEEEEESG
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhhhhhhhHHHHHHHHHHHHH--hcCCcEEEeccH
Confidence 35568999999999999999999988888877775331 2223456677878887765 345666666553
No 97
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=76.98 E-value=4.8 Score=46.48 Aligned_cols=92 Identities=17% Similarity=0.159 Sum_probs=57.4
Q ss_pred HHHHHhcCCCC-ceEEEecCCchhhhHHHHHHHhc------CCceEEEEEcc-cCCcchhHHHHHHHHHHhccCCCCCEE
Q psy4724 66 RLCRILQQPKG-HAMLITIGGSGAAEVTKLATFMN------EYVLFEIEILK-TYGLTDWRDDLCRLMKKSGGKDAKPMT 137 (1650)
Q Consensus 66 rI~Ril~~p~G-~alLvGvgGSGrqSLtrLAafi~------~~~~fqIeitk-~Yg~~~f~eDLk~l~~~~g~~~~k~~v 137 (1650)
++.+.|+..++ |.||.|..|+||.++++.-+--+ ..++..+..+. ..++.+.|+ +..-..... ..++.-|
T Consensus 8 ~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~ir~-li~~~~~~p-~~~~~kv 85 (305)
T 2gno_A 8 TLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDIRT-IKDFLNYSP-ELYTRKY 85 (305)
T ss_dssp HHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHHHHH-HHHHHTSCC-SSSSSEE
T ss_pred HHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHHHHH-HHHHHhhcc-ccCCceE
Confidence 55566666665 57789999999999988766532 23666666542 456555554 322222222 2356778
Q ss_pred EEEecCCcCchhhHHHHHHHHhhhh
Q psy4724 138 FLFSDTQIQNEVFVEHINMLLNTAR 162 (1650)
Q Consensus 138 Fl~tD~qI~~E~fLedIN~lL~tge 162 (1650)
+++.+.+-... +-.|.||.+=|
T Consensus 86 viIdead~lt~---~a~naLLk~LE 107 (305)
T 2gno_A 86 VIVHDCERMTQ---QAANAFLKALE 107 (305)
T ss_dssp EEETTGGGBCH---HHHHHTHHHHH
T ss_pred EEeccHHHhCH---HHHHHHHHHHh
Confidence 88988886543 33577776644
No 98
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=76.51 E-value=31 Score=31.29 Aligned_cols=80 Identities=16% Similarity=0.153 Sum_probs=52.7
Q ss_pred chhhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4724 740 FQVLAMEVYDRVIKIVGPKKAKLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKLE 819 (1650)
Q Consensus 740 ~Wv~A~~~Y~~v~~~v~P~~~~l~~~e~~l~~~~~~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ 819 (1650)
...+|..+-..+-.- ++.+|..++..+..++++-......+..+.+.|..-+.+-.+...+.++|+.++.....+|.
T Consensus 8 dGLrAq~ECrNvT~l---Lq~qLT~Aq~~l~~~eaQAaTCNqTV~tL~~SL~kekaq~q~qq~~v~elqgEI~~Lnq~Lq 84 (99)
T 3ni0_A 8 DGLRAQAECRNTTHL---LQRQLTRTQDSLLQAETQANSCNLTVVTLQESLEKKVSQALEQQARIKELENEVTKLNQELE 84 (99)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666555443 45667777777777776666666666666666666666655556667777777777777776
Q ss_pred HHH
Q psy4724 820 RAE 822 (1650)
Q Consensus 820 ra~ 822 (1650)
-|.
T Consensus 85 da~ 87 (99)
T 3ni0_A 85 NLR 87 (99)
T ss_dssp HHH
T ss_pred HHH
Confidence 655
No 99
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=76.48 E-value=2.3 Score=56.87 Aligned_cols=103 Identities=17% Similarity=0.234 Sum_probs=64.7
Q ss_pred eeehHHHHHHHHHHHHHhc-------CCCCceEEEecCCchhhhHHHHHHHhc---CCceEEEEEcccCCcc----hhH-
Q psy4724 54 IVTFLYIIQHISRLCRILQ-------QPKGHAMLITIGGSGAAEVTKLATFMN---EYVLFEIEILKTYGLT----DWR- 118 (1650)
Q Consensus 54 lVlF~~ai~Hv~rI~Ril~-------~p~G~alLvGvgGSGrqSLtrLAafi~---~~~~fqIeitk~Yg~~----~f~- 118 (1650)
+|=-+.|++.+.+..+..+ .|.|+.||+|..|+||.+|+|.-+... +..++.|..+ .|... .+.
T Consensus 560 viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~-~~~~~~~~s~l~g 638 (854)
T 1qvr_A 560 VVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMT-EYMEKHAVSRLIG 638 (854)
T ss_dssp SCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTT-TCCSSGGGGGC--
T ss_pred cCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEech-hccchhHHHHHcC
Confidence 4556788888887766653 355899999999999999998776665 5666666543 22211 111
Q ss_pred -----------HHHHHHHHHhccCCCCCEEEEEecCCcCchhhHHHHHHHHhhhh
Q psy4724 119 -----------DDLCRLMKKSGGKDAKPMTFLFSDTQIQNEVFVEHINMLLNTAR 162 (1650)
Q Consensus 119 -----------eDLk~l~~~~g~~~~k~~vFl~tD~qI~~E~fLedIN~lL~tge 162 (1650)
..+...+.. ....|++|.|-+-.+...+.-+..+|..|.
T Consensus 639 ~~~~~~G~~~~g~l~~~~~~-----~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~ 688 (854)
T 1qvr_A 639 APPGYVGYEEGGQLTEAVRR-----RPYSVILFDEIEKAHPDVFNILLQILDDGR 688 (854)
T ss_dssp ------------CHHHHHHH-----CSSEEEEESSGGGSCHHHHHHHHHHHTTTE
T ss_pred CCCCCcCccccchHHHHHHh-----CCCeEEEEecccccCHHHHHHHHHHhccCc
Confidence 011111221 223578888876666666666666777664
No 100
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=75.41 E-value=3.5 Score=42.07 Aligned_cols=73 Identities=11% Similarity=0.028 Sum_probs=45.0
Q ss_pred CCCceEEEecCCchhhhHHHHHHHhc---CCceEEEEEcccCCcchhHHHHHHHHHHhccCCCCCEEEEEecCCcCc---
Q psy4724 74 PKGHAMLITIGGSGAAEVTKLATFMN---EYVLFEIEILKTYGLTDWRDDLCRLMKKSGGKDAKPMTFLFSDTQIQN--- 147 (1650)
Q Consensus 74 p~G~alLvGvgGSGrqSLtrLAafi~---~~~~fqIeitk~Yg~~~f~eDLk~l~~~~g~~~~k~~vFl~tD~qI~~--- 147 (1650)
++....|+|..||||.+|.+..+-.. |+.+..+.... +....| . .++-++++.|-+..+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~-~~~~~~-------------~-~~~~lLilDE~~~~~~~~ 99 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAAS-MPLTDA-------------A-FEAEYLAVDQVEKLGNEE 99 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTT-SCCCGG-------------G-GGCSEEEEESTTCCCSHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHH-hhHHHH-------------H-hCCCEEEEeCccccChHH
Confidence 67789999999999999999887665 55555443221 111111 1 234566777766543
Q ss_pred -hhhHHHHHHHHhhh
Q psy4724 148 -EVFVEHINMLLNTA 161 (1650)
Q Consensus 148 -E~fLedIN~lL~tg 161 (1650)
+.+.+.||.+...|
T Consensus 100 ~~~l~~li~~~~~~g 114 (149)
T 2kjq_A 100 QALLFSIFNRFRNSG 114 (149)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcC
Confidence 34555566665554
No 101
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=74.95 E-value=3.5 Score=50.05 Aligned_cols=37 Identities=14% Similarity=0.241 Sum_probs=32.6
Q ss_pred CCCCceEEEecCCchhhhHHHHHHHhcCCceEEEEEc
Q psy4724 73 QPKGHAMLITIGGSGAAEVTKLATFMNEYVLFEIEIL 109 (1650)
Q Consensus 73 ~p~G~alLvGvgGSGrqSLtrLAafi~~~~~fqIeit 109 (1650)
.|.+|.||+|+.|+||.+++|.-|-..++.++.+..+
T Consensus 48 ~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~ 84 (444)
T 1g41_A 48 VTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEAT 84 (444)
T ss_dssp CCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGG
T ss_pred cCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecch
Confidence 3568999999999999999998888889999888754
No 102
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=74.82 E-value=4 Score=49.03 Aligned_cols=25 Identities=16% Similarity=0.169 Sum_probs=19.3
Q ss_pred CCCceEE--EecCCchhhhHHHHHHHh
Q psy4724 74 PKGHAML--ITIGGSGAAEVTKLATFM 98 (1650)
Q Consensus 74 p~G~alL--vGvgGSGrqSLtrLAafi 98 (1650)
..+++++ +|.+|+||.+|++-.+--
T Consensus 49 ~~~~~li~i~G~~G~GKT~L~~~~~~~ 75 (412)
T 1w5s_A 49 SDVNMIYGSIGRVGIGKTTLAKFTVKR 75 (412)
T ss_dssp CCEEEEEECTTCCSSSHHHHHHHHHHH
T ss_pred CCCEEEEeCcCcCCCCHHHHHHHHHHH
Confidence 3456777 799999999998866543
No 103
>1kxf_A Sindbis virus capsid protein; chymotrypsin-like serine proteinase, wild type, viral protein; 2.38A {Sindbis virus} SCOP: b.47.1.3 PDB: 1ld4_A 3j0f_A
Probab=74.69 E-value=0.62 Score=49.20 Aligned_cols=16 Identities=13% Similarity=0.289 Sum_probs=0.0
Q ss_pred CCCCchhhHHHHHHhh
Q psy4724 1561 SLKPLGSYIVDLLARR 1576 (1650)
Q Consensus 1561 s~k~L~~w~~dl~~r~ 1576 (1650)
++..|.+.|+.|..+-
T Consensus 41 QiQQL~~AVsaLt~~Q 56 (264)
T 1kxf_A 41 QIQQLTTAVSALVIGQ 56 (264)
T ss_dssp ----------------
T ss_pred HHHHHHHHHHHHHhhh
Confidence 4566778888877754
No 104
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=74.50 E-value=75 Score=32.53 Aligned_cols=46 Identities=13% Similarity=0.174 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchhhccHHHHHHHHHHHHhhch
Q psy4724 805 KELEDQIELCKQKLERAEKLIGGLGGEKTRWSEASANLSKALVNCI 850 (1650)
Q Consensus 805 ~~l~~~~~~~~~rl~ra~~Li~~L~~E~~rW~~~~~~~~~~~~~l~ 850 (1650)
.+|+..+..+...+++...-......|+..-.+.+..++....++-
T Consensus 93 ~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~e 138 (168)
T 3o0z_A 93 GDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLE 138 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3333333333334444444334444444444444455554444443
No 105
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=74.44 E-value=3.1 Score=54.39 Aligned_cols=68 Identities=15% Similarity=0.265 Sum_probs=53.9
Q ss_pred CCCCceEEEecCCchhhhHHHHHHHhcCCceEEEEE----cccCCcchhHHHHHHHHHHhccCCCCCEEEEEecCC
Q psy4724 73 QPKGHAMLITIGGSGAAEVTKLATFMNEYVLFEIEI----LKTYGLTDWRDDLCRLMKKSGGKDAKPMTFLFSDTQ 144 (1650)
Q Consensus 73 ~p~G~alLvGvgGSGrqSLtrLAafi~~~~~fqIei----tk~Yg~~~f~eDLk~l~~~~g~~~~k~~vFl~tD~q 144 (1650)
.|...+||.|+.|+||..|+|-.|.-++..++.+.. ++-.|..+ ..++.++..|- +..|++++|.+-+
T Consensus 509 ~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~~vGese--~~vr~lF~~Ar--~~~P~IifiDEiD 580 (806)
T 3cf2_A 509 TPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESE--ANVREIFDKAR--QAAPCVLFFDELD 580 (806)
T ss_dssp CCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTTTCSSCH--HHHHHHHHHHH--TTCSEEEECSCGG
T ss_pred CCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhccccchHH--HHHHHHHHHHH--HcCCceeechhhh
Confidence 345568999999999999999999999999998863 35567775 46888888875 5788887776544
No 106
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=73.54 E-value=14 Score=43.22 Aligned_cols=32 Identities=13% Similarity=0.111 Sum_probs=27.5
Q ss_pred CCCceEEEecCCchhhhHHHHHHHhcCCceEE
Q psy4724 74 PKGHAMLITIGGSGAAEVTKLATFMNEYVLFE 105 (1650)
Q Consensus 74 p~G~alLvGvgGSGrqSLtrLAafi~~~~~fq 105 (1650)
|..|.+|+|+.|+||.||+|.-|-..++.+..
T Consensus 50 ~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~ 81 (334)
T 1in4_A 50 VLDHVLLAGPPGLGKTTLAHIIASELQTNIHV 81 (334)
T ss_dssp CCCCEEEESSTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhCCCEEE
Confidence 45799999999999999999999888776543
No 107
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=73.34 E-value=67 Score=32.47 Aligned_cols=78 Identities=13% Similarity=0.229 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhchhhccHHHHHHHHHHHH
Q psy4724 769 YAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKL-ERAEKLIGGLGGEKTRWSEASANLSKAL 846 (1650)
Q Consensus 769 l~~~~~~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl-~ra~~Li~~L~~E~~rW~~~~~~~~~~~ 846 (1650)
+.....++.....++..+.+.+..-+..-..+..++..++.+++.....| +-|.+.+..=..++..-......++.++
T Consensus 46 ~~~l~~~~~~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql 124 (154)
T 2ocy_A 46 YNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQL 124 (154)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444444444445555555666666666666666555 5566666654444444444444444444
No 108
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=73.28 E-value=5.8 Score=46.60 Aligned_cols=22 Identities=18% Similarity=0.128 Sum_probs=19.2
Q ss_pred CceEEEecCCchhhhHHHHHHH
Q psy4724 76 GHAMLITIGGSGAAEVTKLATF 97 (1650)
Q Consensus 76 G~alLvGvgGSGrqSLtrLAaf 97 (1650)
.|.+|+|..|+||.||+|.-+-
T Consensus 37 ~~~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 37 PHLLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp CCEEEECSTTSSHHHHHHTHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999986655
No 109
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=72.98 E-value=4.2 Score=43.75 Aligned_cols=58 Identities=16% Similarity=0.337 Sum_probs=40.2
Q ss_pred CCHHHHHHHHHHHHHHHhccCCCCCcceeehHHHHHHHHHHHHHhcCCCC-ceEEEecCCchhhhHH-HHHHHhcC
Q psy4724 27 DNLDLLTEKINQYIVDYNTQNSNKPIDIVTFLYIIQHISRLCRILQQPKG-HAMLITIGGSGAAEVT-KLATFMNE 100 (1650)
Q Consensus 27 ~~~~~l~~~l~~~l~~yN~~~~~~~m~lVlF~~ai~Hv~rI~Ril~~p~G-~alLvGvgGSGrqSLt-rLAafi~~ 100 (1650)
.|+..+.+.|. |.. .|.+-|-.+++++.+ ..|.. |.|+.|+.|+||.+++ .||.++.|
T Consensus 25 ~~w~~I~~~l~-----yq~------~~~~~f~~~l~~~~~-----~iPkkn~ili~GPPGtGKTt~a~ala~~l~g 84 (212)
T 1tue_A 25 GDWRPIVQFLR-----YQQ------IEFITFLGALKSFLK-----GTPKKNCLVFCGPANTGKSYFGMSFIHFIQG 84 (212)
T ss_dssp CCSHHHHHHHH-----HTT------CCHHHHHHHHHHHHH-----TCTTCSEEEEESCGGGCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHH-----HcC------cCHHHHHHHHHHHHh-----cCCcccEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 46666665554 542 567777777777665 46754 5888999999999986 56666644
No 110
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=72.94 E-value=12 Score=43.60 Aligned_cols=43 Identities=12% Similarity=0.227 Sum_probs=29.7
Q ss_pred HHHHHHHhcCCCCceEEEecCCchhhhHHHHHHHhcCCceEEEEEc
Q psy4724 64 ISRLCRILQQPKGHAMLITIGGSGAAEVTKLATFMNEYVLFEIEIL 109 (1650)
Q Consensus 64 v~rI~Ril~~p~G~alLvGvgGSGrqSLtrLAafi~~~~~fqIeit 109 (1650)
+.++.+ +.. +++++.|..|+||.||.+-.+.-.+....-+...
T Consensus 22 l~~L~~-l~~--~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~ 64 (357)
T 2fna_A 22 IEKLKG-LRA--PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLR 64 (357)
T ss_dssp HHHHHH-TCS--SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGG
T ss_pred HHHHHH-hcC--CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEch
Confidence 445555 555 6999999999999999886655444444444433
No 111
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=72.94 E-value=40 Score=37.52 Aligned_cols=8 Identities=0% Similarity=0.011 Sum_probs=3.9
Q ss_pred cccCchhH
Q psy4724 934 LLIDPQGQ 941 (1650)
Q Consensus 934 LlIDPq~q 941 (1650)
+-|+||.+
T Consensus 206 ~~lppq~~ 213 (256)
T 3na7_A 206 IRLNDKIY 213 (256)
T ss_dssp CBCCHHHH
T ss_pred eeeCHHHH
Confidence 34555544
No 112
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=72.78 E-value=5.5 Score=46.49 Aligned_cols=35 Identities=14% Similarity=0.132 Sum_probs=25.1
Q ss_pred HHHHHHhcCCCCceEEEecCCchhhhHHHHHHHhcC
Q psy4724 65 SRLCRILQQPKGHAMLITIGGSGAAEVTKLATFMNE 100 (1650)
Q Consensus 65 ~rI~Ril~~p~G~alLvGvgGSGrqSLtrLAafi~~ 100 (1650)
.++.+.+.. ++++++.|..|+||.||.+-.+.-.+
T Consensus 22 ~~L~~~l~~-~~~v~i~G~~G~GKT~Ll~~~~~~~~ 56 (350)
T 2qen_A 22 RKLEESLEN-YPLTLLLGIRRVGKSSLLRAFLNERP 56 (350)
T ss_dssp HHHHHHHHH-CSEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred HHHHHHHhc-CCeEEEECCCcCCHHHHHHHHHHHcC
Confidence 334444443 37999999999999999876655444
No 113
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=71.72 E-value=43 Score=31.65 Aligned_cols=35 Identities=20% Similarity=0.154 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4724 765 AEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQ 799 (1650)
Q Consensus 765 ~e~~l~~~~~~L~~~~~~l~~~~~~l~~l~~~~~~ 799 (1650)
++.+|..+++.|...+.+-......+..|++.++.
T Consensus 30 Lq~qLTqAQe~l~~~eaQAaTCNqTV~tL~~SL~~ 64 (121)
T 3mq7_A 30 LQQELTEAQKGFQDVEAQAATANHTVMALMASLDA 64 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444443
No 114
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=71.64 E-value=4.1 Score=45.66 Aligned_cols=28 Identities=11% Similarity=0.192 Sum_probs=20.5
Q ss_pred eEEEecCCchhhhHHH-HHHHhcCCceEEE
Q psy4724 78 AMLITIGGSGAAEVTK-LATFMNEYVLFEI 106 (1650)
Q Consensus 78 alLvGvgGSGrqSLtr-LAafi~~~~~fqI 106 (1650)
.+++|+.||||.||++ ||... ++.++..
T Consensus 4 i~I~G~~GSGKSTla~~La~~~-~~~~i~~ 32 (253)
T 2ze6_A 4 HLIYGPTCSGKTDMAIQIAQET-GWPVVAL 32 (253)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH-CCCEEEC
T ss_pred EEEECCCCcCHHHHHHHHHhcC-CCeEEec
Confidence 5789999999999988 55544 4554433
No 115
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=71.46 E-value=4.7 Score=46.75 Aligned_cols=67 Identities=15% Similarity=0.236 Sum_probs=46.2
Q ss_pred ceEEEecCCchhhhHHHHHHHhcCCceEEE--------------------------------EEcccCCcchhHHHHHHH
Q psy4724 77 HAMLITIGGSGAAEVTKLATFMNEYVLFEI--------------------------------EILKTYGLTDWRDDLCRL 124 (1650)
Q Consensus 77 ~alLvGvgGSGrqSLtrLAafi~~~~~fqI--------------------------------eitk~Yg~~~f~eDLk~l 124 (1650)
..+|+|+.||||.+|++.-|--.++.++.+ ++...|+..+|+++....
T Consensus 7 ~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~qvy~~~~igTakp~~~e~~gvph~lid~~~~~~~~~~~~F~~~a~~~ 86 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMALADALPCELISVDSALIYRGMDIGTAKPSRELLARYPHRLIDIRDPAESYSAAEFRADALAA 86 (323)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHSCEEEEEECTTTTBTTCCTTTTCCCHHHHHHSCEETSSCBCTTSCCCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEeccchhhhcCCCcccCCCCHHHHcCCCEEEeeccCcccccCHHHHHHHHHHH
Confidence 568999999999999875443334444443 123568888999988887
Q ss_pred HHHhccCCCCCEEEEEecCCc
Q psy4724 125 MKKSGGKDAKPMTFLFSDTQI 145 (1650)
Q Consensus 125 ~~~~g~~~~k~~vFl~tD~qI 145 (1650)
+.... ..+.++++.+-+-.
T Consensus 87 i~~i~--~~g~~~IlvGGt~~ 105 (323)
T 3crm_A 87 MAKAT--ARGRIPLLVGGTML 105 (323)
T ss_dssp HHHHH--HTTCEEEEEESCHH
T ss_pred HHHHH--HcCCeEEEECCchh
Confidence 77654 33457777776654
No 116
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=71.43 E-value=24 Score=44.68 Aligned_cols=69 Identities=20% Similarity=0.179 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhccHHHHHHHHHHHHhh
Q psy4724 780 RAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKLERAEKLIGGLGGEKTRWSEASANLSKALVN 848 (1650)
Q Consensus 780 ~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~~Li~~L~~E~~rW~~~~~~~~~~~~~ 848 (1650)
++..+..+.+++.++++.++..++.+.++++...++.+++...+.+.-|..|...|..++.++.+....
T Consensus 515 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~~ 583 (597)
T 3oja_B 515 KERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKNR 583 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 334444555556666666666677777778888888888888888888999999999888888776653
No 117
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=70.52 E-value=5.5 Score=42.54 Aligned_cols=23 Identities=13% Similarity=-0.097 Sum_probs=19.4
Q ss_pred CceEEEecCCchhhhHHHHHHHh
Q psy4724 76 GHAMLITIGGSGAAEVTKLATFM 98 (1650)
Q Consensus 76 G~alLvGvgGSGrqSLtrLAafi 98 (1650)
.+.+|.|.+|+||.+|++..+.-
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999998765543
No 118
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=70.51 E-value=69 Score=31.05 Aligned_cols=69 Identities=13% Similarity=0.181 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy4724 761 KLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKLERAEKLIGGLG 829 (1650)
Q Consensus 761 ~l~~~e~~l~~~~~~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~~Li~~L~ 829 (1650)
.++.+.+++..+..+-.....++..+...++.++.+|+.-....+.++.++.....-++.+.-.-..|.
T Consensus 21 ~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD~~~l~r~dLE 89 (119)
T 3ol1_A 21 EMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLE 89 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHH
Confidence 344555555555555555566666777777777777777777777777776666655554444333333
No 119
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=70.38 E-value=7.2 Score=45.16 Aligned_cols=32 Identities=6% Similarity=-0.138 Sum_probs=24.5
Q ss_pred HHHhc-CCCCceEEEecCCchhhhHHHHHHHhc
Q psy4724 68 CRILQ-QPKGHAMLITIGGSGAAEVTKLATFMN 99 (1650)
Q Consensus 68 ~Ril~-~p~G~alLvGvgGSGrqSLtrLAafi~ 99 (1650)
.+.+. .+.++++|.|+.|+||.+++|..+--.
T Consensus 37 ~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L 69 (318)
T 3te6_A 37 YDSLMSSQNKLFYITNADDSTKFQLVNDVMDEL 69 (318)
T ss_dssp HHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHH
T ss_pred HHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 34443 456689999999999999999776544
No 120
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=69.63 E-value=78 Score=30.06 Aligned_cols=47 Identities=13% Similarity=0.268 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchhhccHHHHHHHHHHHHhhchh
Q psy4724 805 KELEDQIELCKQKLERAEKLIGGLGGEKTRWSEASANLSKALVNCIG 851 (1650)
Q Consensus 805 ~~l~~~~~~~~~rl~ra~~Li~~L~~E~~rW~~~~~~~~~~~~~l~G 851 (1650)
+.++.+++.-..-+.....-++.+..+...|...+..+......|.+
T Consensus 57 e~lk~eL~~~~~el~~lq~~l~~~~~~~~~l~~~~~~l~~Ek~~L~~ 103 (107)
T 2no2_A 57 ESLKQELATSQRELQVLQGSLETSAQSEANWAAEFAELEKERDSLVS 103 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444444455666677777888898888888888777655
No 121
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=69.37 E-value=5.4 Score=47.45 Aligned_cols=58 Identities=12% Similarity=0.052 Sum_probs=38.9
Q ss_pred ceeehHHHHHHHHHHH-HHhcC-CCCceEEEecCCchhhhHHHHHHHhc-----------CCceEEEEEcc
Q psy4724 53 DIVTFLYIIQHISRLC-RILQQ-PKGHAMLITIGGSGAAEVTKLATFMN-----------EYVLFEIEILK 110 (1650)
Q Consensus 53 ~lVlF~~ai~Hv~rI~-Ril~~-p~G~alLvGvgGSGrqSLtrLAafi~-----------~~~~fqIeitk 110 (1650)
++|=-+..++.+.+.. +.+.. +.++++|.|++|+||.+|++..+--. ++.++.+....
T Consensus 21 ~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~ 91 (384)
T 2qby_B 21 EIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCRE 91 (384)
T ss_dssp SCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECcc
Confidence 3555567777766543 33333 34589999999999999998776554 66666665443
No 122
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=69.15 E-value=1.6 Score=49.36 Aligned_cols=33 Identities=24% Similarity=0.396 Sum_probs=26.0
Q ss_pred CCCCceEEEecCCchhhhHHHHHHHhcCCceEEE
Q psy4724 73 QPKGHAMLITIGGSGAAEVTKLATFMNEYVLFEI 106 (1650)
Q Consensus 73 ~p~G~alLvGvgGSGrqSLtrLAafi~~~~~fqI 106 (1650)
.|+| +||.|..|+||.+|+|..+--.+..++.+
T Consensus 43 ~~~~-vll~G~~GtGKT~la~~la~~~~~~~~~v 75 (268)
T 2r62_A 43 IPKG-VLLVGPPGTGKTLLAKAVAGEAHVPFFSM 75 (268)
T ss_dssp CCSC-CCCBCSSCSSHHHHHHHHHHHHTCCCCCC
T ss_pred CCce-EEEECCCCCcHHHHHHHHHHHhCCCEEEe
Confidence 3444 89999999999999998887766665554
No 123
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=69.07 E-value=1 Score=59.62 Aligned_cols=67 Identities=13% Similarity=0.209 Sum_probs=45.8
Q ss_pred CCCCceEEEecCCchhhhHHHHHHHhcCCceEEEEEcccCC--cchhHHHHHHHHHHhccCCCCCEEEEEe
Q psy4724 73 QPKGHAMLITIGGSGAAEVTKLATFMNEYVLFEIEILKTYG--LTDWRDDLCRLMKKSGGKDAKPMTFLFS 141 (1650)
Q Consensus 73 ~p~G~alLvGvgGSGrqSLtrLAafi~~~~~fqIeitk~Yg--~~~f~eDLk~l~~~~g~~~~k~~vFl~t 141 (1650)
.|++++||+|+.|+||.+|+|..|...+..++.+..+.-++ ..+....++.++..+. ...|++++|.
T Consensus 509 ~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~--~~~p~vl~iD 577 (806)
T 1ypw_A 509 TPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKAR--QAAPCVLFFD 577 (806)
T ss_dssp CCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSSTTCCTTTSSHHHHHHHHHHH--HHCSBCCCCS
T ss_pred CCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhhhhhcCccHHHHHHHHHHHH--hcCCeEEEEE
Confidence 46789999999999999999999999998887775432111 1122345777777765 2335444433
No 124
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=68.98 E-value=3.6 Score=48.61 Aligned_cols=46 Identities=20% Similarity=0.323 Sum_probs=34.1
Q ss_pred HHHHhcCCCCceEEEecCCchhhhHHHH-HHHhc---CCceEEEEEcccC
Q psy4724 67 LCRILQQPKGHAMLITIGGSGAAEVTKL-ATFMN---EYVLFEIEILKTY 112 (1650)
Q Consensus 67 I~Ril~~p~G~alLvGvgGSGrqSLtrL-Aafi~---~~~~fqIeitk~Y 112 (1650)
+.+++..|+|..+++|..||||.||.+. +.++. +..+..++-...|
T Consensus 115 l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~ 164 (356)
T 3jvv_A 115 FKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEF 164 (356)
T ss_dssp HHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCS
T ss_pred HHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHh
Confidence 3344678999999999999999999995 45554 4567777655444
No 125
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=68.37 E-value=57 Score=32.70 Aligned_cols=55 Identities=13% Similarity=0.042 Sum_probs=23.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4724 756 GPKKAKLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQ 810 (1650)
Q Consensus 756 ~P~~~~l~~~e~~l~~~~~~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~ 810 (1650)
.-++.++..++..+......+..+...++.+.+.+..|+-++..+..+...|+.+
T Consensus 71 ~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~E 125 (152)
T 3a7p_A 71 AILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKE 125 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444444444444444444444444443
No 126
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=68.32 E-value=29 Score=29.11 Aligned_cols=55 Identities=15% Similarity=0.127 Sum_probs=30.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4724 756 GPKKAKLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQ 810 (1650)
Q Consensus 756 ~P~~~~l~~~e~~l~~~~~~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~ 810 (1650)
+|.......++..+..........+.++.....++..+...+.....+...++.+
T Consensus 1 kP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~q 55 (60)
T 3htk_A 1 KPFANTKKTLENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQ 55 (60)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3666666666666666665555555555555555555555555544444444433
No 127
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=68.06 E-value=40 Score=33.79 Aligned_cols=67 Identities=16% Similarity=0.275 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhh----ccHHHHHHH
Q psy4724 775 KLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKLERAEKLIGGLGGEK----TRWSEASAN 841 (1650)
Q Consensus 775 ~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~~Li~~L~~E~----~rW~~~~~~ 841 (1650)
.+...+.++..++.++..+...+.+..+-.+.+..++...+..+..++.=+..|..|. .||-.....
T Consensus 69 ~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RWM~rk~q 139 (152)
T 3a7p_A 69 TLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARWLKKTEK 139 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444445555555555555444455555555555555555555555555554 599776544
No 128
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=67.79 E-value=38 Score=32.25 Aligned_cols=100 Identities=15% Similarity=0.085 Sum_probs=49.9
Q ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy4724 754 IVGPKKAKLAEAEADYAVQMEKLNSKRAQLA----TVLGKLQALRDELAQKSKDKKELEDQIELCKQKLERAEKLIGGLG 829 (1650)
Q Consensus 754 ~v~P~~~~l~~~e~~l~~~~~~L~~~~~~l~----~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~~Li~~L~ 829 (1650)
.+.-+...+.+++..|.+..+.-....+.+. +-..++..|...+..+.+....|+.....++.. +..=+.-|.
T Consensus 7 ~~~~lq~~~~ql~~qL~k~~~~r~~Le~~w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~~---vq~qL~~Lt 83 (112)
T 1x79_B 7 QVKKLQLMLRQANDQLEKTMKDKQELEDFIKQSSEDSSHQISALVLRAQASEILLEELQQGLSQAKRD---VQEQMAVLM 83 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 3344444555555555555444444443332 334567777777777777777777777766643 355566777
Q ss_pred hhhccHHHHHHHHHHHHhhchhHHHHH
Q psy4724 830 GEKTRWSEASANLSKALVNCIGDILIC 856 (1650)
Q Consensus 830 ~E~~rW~~~~~~~~~~~~~l~Gd~ll~ 856 (1650)
..+++=...+..++....+|.|--.+-
T Consensus 84 ~~Re~V~~eL~rLQ~eNd~L~Gk~~~h 110 (112)
T 1x79_B 84 QSREQVSEELVRLQKDNDSLQGKHSLH 110 (112)
T ss_dssp HHHHHHHTC------------------
T ss_pred HHHHHHHHHHHHHHhhccchhhhhhhc
Confidence 778888888888999988888865443
No 129
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=67.77 E-value=21 Score=35.35 Aligned_cols=73 Identities=18% Similarity=0.226 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhhhchhhc
Q psy4724 761 KLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKL----ERAEKLIGGLGGEKT 833 (1650)
Q Consensus 761 ~l~~~e~~l~~~~~~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl----~ra~~Li~~L~~E~~ 833 (1650)
++++++.........+...+.++.++...++.|+.+++.....+..|+..+..++.+. ..+...|..|..+-.
T Consensus 16 K~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~ 92 (129)
T 3tnu_B 16 KYEELQQTAGRHGDDLRNTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLAELEEALQ 92 (129)
T ss_dssp ------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 3444444444555556666666777777777777777777777777777777666544 334445555555443
No 130
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=67.38 E-value=2.3 Score=47.94 Aligned_cols=32 Identities=13% Similarity=0.161 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHhcCCCCceEEEecCCchhhhHHHHHH
Q psy4724 59 YIIQHISRLCRILQQPKGHAMLITIGGSGAAEVTKLAT 96 (1650)
Q Consensus 59 ~ai~Hv~rI~Ril~~p~G~alLvGvgGSGrqSLtrLAa 96 (1650)
.+++.++ -.|+|..+++|..||||.||.++.+
T Consensus 15 ~vl~~i~------i~~g~~v~i~Gp~GsGKSTll~~l~ 46 (261)
T 2eyu_A 15 DKVLELC------HRKMGLILVTGPTGSGKSTTIASMI 46 (261)
T ss_dssp THHHHGG------GCSSEEEEEECSTTCSHHHHHHHHH
T ss_pred HHHHHHh------hCCCCEEEEECCCCccHHHHHHHHH
Confidence 4666665 2678899999999999999988654
No 131
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=66.92 E-value=7 Score=49.07 Aligned_cols=37 Identities=14% Similarity=-0.018 Sum_probs=31.4
Q ss_pred CCCCceEEEecCCchhhhHHHHHHHhcCCceEEEEEc
Q psy4724 73 QPKGHAMLITIGGSGAAEVTKLATFMNEYVLFEIEIL 109 (1650)
Q Consensus 73 ~p~G~alLvGvgGSGrqSLtrLAafi~~~~~fqIeit 109 (1650)
.|+.+.||+|..|+||.+|+|..+-..+.....|...
T Consensus 106 ~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~ 142 (543)
T 3m6a_A 106 LKGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLG 142 (543)
T ss_dssp CCSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEec
Confidence 3667999999999999999999988888777777544
No 132
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=66.50 E-value=26 Score=40.29 Aligned_cols=138 Identities=18% Similarity=0.159 Sum_probs=71.1
Q ss_pred cHHHHHHHHHhhhcCCCCCchhhHhHhhcCccchhhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH----HHHHH
Q psy4724 708 DLNISMKQLQMFLNDYTTIPFDALIYLTASIPFQVLAMEVYDRVIKIVGPKKAKLAEAEADYAVQMEKLNS----KRAQL 783 (1650)
Q Consensus 708 Dl~~~~~~l~~~l~~~~~~p~~~l~~~~~s~a~Wv~A~~~Y~~v~~~v~P~~~~l~~~e~~l~~~~~~L~~----~~~~l 783 (1650)
|+...+..|++.+.+..... .++...++.|.+|.+ ...+.....+..+.+...+|+. ++..+
T Consensus 64 ~~~~rIe~L~~~L~~~s~s~--------~~~~~y~~~~~~~lk------~~~~q~~dndn~~~e~s~eLe~~i~~lk~~V 129 (390)
T 1deq_A 64 DFTSRINKLRDSLFNYQKNS--------KDSNTLTKNIVELMR------GDFAKANNNDNTFKQINEDLRSRIEILRRKV 129 (390)
T ss_pred hHHHHHHHHHHHHHHHHHhh--------hHHHHHHHHHHHHHH------HHHHhhccchHHHHHHHHHHHHHHHHHHHHH
Confidence 44446777776654432211 222244445544422 2223333333333333333333 23333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhccHHHHHHHHHHHHhhchhHHHHHHHHHHhc
Q psy4724 784 ATVLGKLQALRDELAQKSKDKKELEDQIELCKQKLERAEKLIGGLGGEKTRWSEASANLSKALVNCIGDILICAGIITYL 863 (1650)
Q Consensus 784 ~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~~Li~~L~~E~~rW~~~~~~~~~~~~~l~Gd~ll~aa~i~Y~ 863 (1650)
...-..|..|+..++....++++||..++.|..-+.++...--.+.-..+-.+ +.++++..+...-|+-+-=+.|+
T Consensus 130 ~~q~~~ir~Lq~~l~~q~~kiqRLE~~Id~c~~~C~~sC~~~l~~~vD~e~ye----~qqKQL~qv~a~~llP~~~~q~l 205 (390)
T 1deq_A 130 IEQVQRINLLQKNVRDQLVDMKRLEVDIDIKIRSCKGSCSRALEHKVDLEDYK----NQQKQLEQVIAINLLPSRDIQYL 205 (390)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhccHHHHH----HHHHHHHhhhhhccccccccccc
Confidence 33333788899999999999999999999888777766665444332222222 23333444444444444334444
No 133
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=65.94 E-value=14 Score=44.24 Aligned_cols=92 Identities=13% Similarity=0.159 Sum_probs=49.3
Q ss_pred cHHHHHHHHHhhhcCCCCCchhhHhHhhcCccchhhHHHHHHHHHHhcchHHHHHHHHHHHHH----HHHHHHHHHHHHH
Q psy4724 708 DLNISMKQLQMFLNDYTTIPFDALIYLTASIPFQVLAMEVYDRVIKIVGPKKAKLAEAEADYA----VQMEKLNSKRAQL 783 (1650)
Q Consensus 708 Dl~~~~~~l~~~l~~~~~~p~~~l~~~~~s~a~Wv~A~~~Y~~v~~~v~P~~~~l~~~e~~l~----~~~~~L~~~~~~l 783 (1650)
|+...|+.|++.+++. .-...++..|+..+++| ++.......+.+..+. +.+..++.++.+|
T Consensus 61 DltkrINELKnqLEdl--------sKnsKdseqy~k~~~E~------Lr~rq~q~~dNdNtynE~S~ELRRrIqyLKekV 126 (562)
T 3ghg_A 61 DFTNRINKLKNSLFEY--------QKNNKDSHSLTTNIMEI------LRGDFSSANNRDNTYNRVSEDLRSRIEVLKRKV 126 (562)
T ss_dssp HHHHHHHHHHHHHTHH--------HHHHHHHHHHHHHHHHT------TSSHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHH--------HhhchhHHHHHHHHHHH------HHHHHHhhhccchhHHHHHHHHHHHHHHHHHHH
Confidence 4455777777665432 22233333555555444 2222222222222222 3334444455555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4724 784 ATVLGKLQALRDELAQKSKDKKELEDQIEL 813 (1650)
Q Consensus 784 ~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~ 813 (1650)
...-.+|+.||..+++...++++||.++..
T Consensus 127 dnQlsnIrvLQsnLedq~~kIQRLEvDIdi 156 (562)
T 3ghg_A 127 IEKVQHIQLLQKNVRAQLVDMKRLEVDIDI 156 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555577777888888888888888777654
No 134
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=65.64 E-value=98 Score=31.17 Aligned_cols=13 Identities=15% Similarity=0.335 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHHH
Q psy4724 809 DQIELCKQKLERA 821 (1650)
Q Consensus 809 ~~~~~~~~rl~ra 821 (1650)
.+++.+..|.+.|
T Consensus 87 ~dLeraeeRae~a 99 (147)
T 2b9c_A 87 SDLERAEERAELS 99 (147)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 135
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=64.97 E-value=19 Score=35.69 Aligned_cols=73 Identities=22% Similarity=0.306 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhhhchhhc
Q psy4724 761 KLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKLE----RAEKLIGGLGGEKT 833 (1650)
Q Consensus 761 ~l~~~e~~l~~~~~~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~----ra~~Li~~L~~E~~ 833 (1650)
++++++.........+...+.++.++...++.|+.+++.....+..|+..+..++.+.. .+...|..|..+-.
T Consensus 18 K~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~ 94 (131)
T 3tnu_A 18 KTEELNREVATNSELVQSGKSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEMIGSVEEQLA 94 (131)
T ss_dssp -----------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555666666677777777777777777777777777777776665543 34445555555543
No 136
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=64.15 E-value=20 Score=49.34 Aligned_cols=21 Identities=24% Similarity=0.246 Sum_probs=16.5
Q ss_pred CCceEEEecCCchhhhHHHHH
Q psy4724 75 KGHAMLITIGGSGAAEVTKLA 95 (1650)
Q Consensus 75 ~G~alLvGvgGSGrqSLtrLA 95 (1650)
....++.|-.||||..-|++.
T Consensus 169 ~Q~i~isGeSGaGKTe~~k~~ 189 (1184)
T 1i84_S 169 DQSILCTGESGAGKTENTKKV 189 (1184)
T ss_dssp CEEEECCCSTTSSTTHHHHHH
T ss_pred CcEEEEecCCCCCccHHHHHH
Confidence 345677799999999888764
No 137
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=63.46 E-value=12 Score=49.97 Aligned_cols=63 Identities=16% Similarity=0.242 Sum_probs=40.6
Q ss_pred HHHHHHhcC--CCCceEEEecCCchhhhHHHHHHH---hc---CCceEEEEEcccCCcchhHHHHHHHHHH
Q psy4724 65 SRLCRILQQ--PKGHAMLITIGGSGAAEVTKLATF---MN---EYVLFEIEILKTYGLTDWRDDLCRLMKK 127 (1650)
Q Consensus 65 ~rI~Ril~~--p~G~alLvGvgGSGrqSLtrLAaf---i~---~~~~fqIeitk~Yg~~~f~eDLk~l~~~ 127 (1650)
.+|.+.|.. +.+-+.++|+||.||.+|++..+. +. +..++=+.++..++...+...|...+..
T Consensus 138 eeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~~ 208 (1221)
T 1vt4_I 138 LKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ 208 (1221)
T ss_dssp HHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHhh
Confidence 344444432 356788999999999999987663 22 2336777787777665665555554433
No 138
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=63.19 E-value=83 Score=33.00 Aligned_cols=27 Identities=11% Similarity=-0.011 Sum_probs=12.5
Q ss_pred HhhhchhhccHHHHHHHHHHHHhhchh
Q psy4724 825 IGGLGGEKTRWSEASANLSKALVNCIG 851 (1650)
Q Consensus 825 i~~L~~E~~rW~~~~~~~~~~~~~l~G 851 (1650)
+..|..++..-...+..++.....+-.
T Consensus 97 l~~l~~~~~~l~~~ireLEq~NDdlEr 123 (189)
T 2v71_A 97 LSQTRAIKEQLHKYVRELEQANDDLER 123 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 334444444444455555544444433
No 139
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=63.04 E-value=5.3 Score=49.45 Aligned_cols=59 Identities=14% Similarity=0.120 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHhccCCCCCcceeehHHHHHHHHHHHHHhcCCCCceEEEecCCchhhhHHHHHHHhcC
Q psy4724 31 LLTEKINQYIVDYNTQNSNKPIDIVTFLYIIQHISRLCRILQQPKGHAMLITIGGSGAAEVTKLATFMNE 100 (1650)
Q Consensus 31 ~l~~~l~~~l~~yN~~~~~~~m~lVlF~~ai~Hv~rI~Ril~~p~G~alLvGvgGSGrqSLtrLAafi~~ 100 (1650)
.+.+.+....+..+.. +|=-+++++-+.... ..+||+||+|+.|+||.+|+|..+...+
T Consensus 8 ~~~~~~~~l~~~l~~~-------ivGq~~~i~~l~~al----~~~~~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 8 LLAERISRLSSSLEKG-------LYERSHAIRLCLLAA----LSGESVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp HHHHHHHHHHHHHHTT-------CSSCHHHHHHHHHHH----HHTCEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred HHHHHHHHHHHHHHhh-------hHHHHHHHHHHHHHH----hcCCeeEeecCchHHHHHHHHHHHHHHh
Confidence 3444455444444431 222355554433322 3478999999999999999997777654
No 140
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=62.15 E-value=17 Score=50.10 Aligned_cols=40 Identities=15% Similarity=0.164 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4724 761 KLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQK 800 (1650)
Q Consensus 761 ~l~~~e~~l~~~~~~L~~~~~~l~~~~~~l~~l~~~~~~~ 800 (1650)
+++++++++...++.+...++.+.++++++..|+.+.+++
T Consensus 858 El~~L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l 897 (1184)
T 1i84_S 858 EMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLL 897 (1184)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444443333333
No 141
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=61.40 E-value=5 Score=48.43 Aligned_cols=46 Identities=20% Similarity=0.326 Sum_probs=33.5
Q ss_pred HHHHhcCCCCceEEEecCCchhhhHHHH-HHHhc--CCceEEEEEcccC
Q psy4724 67 LCRILQQPKGHAMLITIGGSGAAEVTKL-ATFMN--EYVLFEIEILKTY 112 (1650)
Q Consensus 67 I~Ril~~p~G~alLvGvgGSGrqSLtrL-Aafi~--~~~~fqIeitk~Y 112 (1650)
+..++..|+|..+++|..||||.||.+. +.++. +..+..++-...|
T Consensus 159 L~~l~~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~ 207 (418)
T 1p9r_A 159 FRRLIKRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEF 207 (418)
T ss_dssp HHHHHTSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCS
T ss_pred HHHHHHhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchh
Confidence 3444568899999999999999999885 45554 3457777655444
No 142
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=60.79 E-value=6.9 Score=45.09 Aligned_cols=45 Identities=11% Similarity=0.136 Sum_probs=35.1
Q ss_pred eehHHHHHHHHHHHHHhcCCCCceEEEecCCchhhhHHHHHHHhc
Q psy4724 55 VTFLYIIQHISRLCRILQQPKGHAMLITIGGSGAAEVTKLATFMN 99 (1650)
Q Consensus 55 VlF~~ai~Hv~rI~Ril~~p~G~alLvGvgGSGrqSLtrLAafi~ 99 (1650)
|--..++.++.+..+-.....+++||.|..|+||.+++|..+...
T Consensus 5 ig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 5 IGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp CCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred EECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhC
Confidence 334567777777666666678899999999999999998876654
No 143
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=60.36 E-value=1e+02 Score=28.68 Aligned_cols=71 Identities=17% Similarity=0.248 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy4724 758 KKAKLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKLERAEKLIGGL 828 (1650)
Q Consensus 758 ~~~~l~~~e~~l~~~~~~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~~Li~~L 828 (1650)
+..+|.+++++-+.....+...+.+...+...=..+-.+|.....+...++++...+..++..|..-+.-|
T Consensus 23 L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~~~~~~qLdkL 93 (96)
T 3q8t_A 23 LIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQMRYAQMQLDKL 93 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33455555555555555555555555556555556666677777777777777777777777766655544
No 144
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=60.29 E-value=5 Score=41.80 Aligned_cols=28 Identities=18% Similarity=0.211 Sum_probs=21.5
Q ss_pred CCceEEEecCCchhhhHHHHHHHhcCCc
Q psy4724 75 KGHAMLITIGGSGAAEVTKLATFMNEYV 102 (1650)
Q Consensus 75 ~G~alLvGvgGSGrqSLtrLAafi~~~~ 102 (1650)
+-...|+|..||||.||+|+-+-..|+.
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~g~~ 35 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQLHAA 35 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHTCE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhhCcE
Confidence 3467899999999999998766444543
No 145
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=60.25 E-value=1.3e+02 Score=30.69 Aligned_cols=37 Identities=8% Similarity=0.065 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4724 782 QLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKL 818 (1650)
Q Consensus 782 ~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl 818 (1650)
.++.++..+.+|++.+......+..|+.++..++..|
T Consensus 42 ~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L 78 (168)
T 3o0z_A 42 SISQLESLNRELQERNRILENSKSQTDKDYYQLQAIL 78 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555666666666666666555555443
No 146
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=59.95 E-value=9.4 Score=43.82 Aligned_cols=72 Identities=21% Similarity=0.270 Sum_probs=50.4
Q ss_pred eEEEecCCchhhhHHH-HHHHhcCCceE--------------------------------EEEEcccCCcchhHHHHHHH
Q psy4724 78 AMLITIGGSGAAEVTK-LATFMNEYVLF--------------------------------EIEILKTYGLTDWRDDLCRL 124 (1650)
Q Consensus 78 alLvGvgGSGrqSLtr-LAafi~~~~~f--------------------------------qIeitk~Yg~~~f~eDLk~l 124 (1650)
.+++|+.||||.+|++ ||... +..+. .++....|+..+|.++..+.
T Consensus 13 i~i~GptgsGKt~la~~La~~~-~~~iis~Ds~qvY~~~~igTakp~~~E~~~v~hhlid~~~~~e~~s~~~f~~~a~~~ 91 (316)
T 3foz_A 13 IFLMGPTASGKTALAIELRKIL-PVELISVDSALIYKGMDIGTAKPNAEELLAAPHRLLDIRDPSQAYSAADFRRDALAE 91 (316)
T ss_dssp EEEECCTTSCHHHHHHHHHHHS-CEEEEECCTTTTBTTCCTTTTCCCHHHHHHSCEETSSCBCTTSCCCHHHHHHHHHHH
T ss_pred EEEECCCccCHHHHHHHHHHhC-CCcEEecccccccccccccCCCCCHHHHcCCCEEEeccCCccccccHHHHHHHHHHH
Confidence 4678999999999975 55444 32222 22455679999999999888
Q ss_pred HHHhccCCCCCEEEEEecCCcCchhhHHHHHHHHh
Q psy4724 125 MKKSGGKDAKPMTFLFSDTQIQNEVFVEHINMLLN 159 (1650)
Q Consensus 125 ~~~~g~~~~k~~vFl~tD~qI~~E~fLedIN~lL~ 159 (1650)
+...- ..+.++++.+-|.. ||+.+|.
T Consensus 92 i~~i~--~~g~~pilVGGTgl-------Yi~all~ 117 (316)
T 3foz_A 92 MADIT--AAGRIPLLVGGTML-------YFKALLE 117 (316)
T ss_dssp HHHHH--HTTCEEEEEESCHH-------HHHHHHS
T ss_pred HHHHH--hCCCcEEEEcCcHH-------HHHHHHc
Confidence 87654 34457788888874 5667763
No 147
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=59.20 E-value=5.8 Score=41.67 Aligned_cols=30 Identities=20% Similarity=0.331 Sum_probs=22.8
Q ss_pred CCceEEEecCCchhhhHHHHHHHhcCCceE
Q psy4724 75 KGHAMLITIGGSGAAEVTKLATFMNEYVLF 104 (1650)
Q Consensus 75 ~G~alLvGvgGSGrqSLtrLAafi~~~~~f 104 (1650)
.-+.+|+|+.||||.|+++.-+--.|+.++
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i 34 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILY 34 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 347899999999999999866554455443
No 148
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=59.16 E-value=1.1e+02 Score=28.04 Aligned_cols=29 Identities=17% Similarity=0.331 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4724 790 LQALRDELAQKSKDKKELEDQIELCKQKL 818 (1650)
Q Consensus 790 l~~l~~~~~~~~~e~~~l~~~~~~~~~rl 818 (1650)
++.....++.....+..|+..+..++.|+
T Consensus 58 l~eaEe~~~~L~~~K~eLE~~l~el~~rl 86 (89)
T 3bas_A 58 MKQLEDKVEELLSKNYHLENEVARLKKLV 86 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444444444445555555555554443
No 149
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=59.15 E-value=17 Score=45.74 Aligned_cols=54 Identities=13% Similarity=-0.026 Sum_probs=32.9
Q ss_pred CCceEEEecCCchhhhHHHHHHH-----hcCCc--eEEEEEcccCCcchhHHHHHHHHHHhc
Q psy4724 75 KGHAMLITIGGSGAAEVTKLATF-----MNEYV--LFEIEILKTYGLTDWRDDLCRLMKKSG 129 (1650)
Q Consensus 75 ~G~alLvGvgGSGrqSLtrLAaf-----i~~~~--~fqIeitk~Yg~~~f~eDLk~l~~~~g 129 (1650)
.+-+.++|+||.||.+|++.++. +.++. ++-+.++..++ -+..+=++.++...|
T Consensus 152 ~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~-~~~~~~~~~il~~l~ 212 (549)
T 2a5y_B 152 SFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAP-KSTFDLFTDILLMLK 212 (549)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCST-THHHHHHHHHHHHHT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCC-CCHHHHHHHHHHHHh
Confidence 45678999999999999998885 44432 23334554432 122333445555555
No 150
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=58.33 E-value=5.9 Score=41.01 Aligned_cols=25 Identities=12% Similarity=0.181 Sum_probs=21.4
Q ss_pred ceEEEecCCchhhhHHHHHHHhcCC
Q psy4724 77 HAMLITIGGSGAAEVTKLATFMNEY 101 (1650)
Q Consensus 77 ~alLvGvgGSGrqSLtrLAafi~~~ 101 (1650)
...|+|..||||.||+|+-+-..++
T Consensus 6 ~i~l~G~~GsGKSTl~~~La~~l~~ 30 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGRQLAQQLNM 30 (173)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHTTC
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCC
Confidence 6789999999999999987766565
No 151
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=58.28 E-value=49 Score=26.97 Aligned_cols=45 Identities=13% Similarity=0.188 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4724 775 KLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKLE 819 (1650)
Q Consensus 775 ~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ 819 (1650)
++...-.++..+..++.+|+.+...+..+.+..+.+......||+
T Consensus 5 ki~~Lss~V~~L~~kVdqLssdV~al~~~v~~ak~eA~RAN~RlD 49 (52)
T 1jcd_A 5 KADQASSDAQTANAKADQASNDANAARSDAQAAKDDAARANQRAD 49 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 344445556666666666666666666666666666665555554
No 152
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=58.19 E-value=4.9 Score=43.96 Aligned_cols=29 Identities=10% Similarity=0.203 Sum_probs=20.7
Q ss_pred cCCCCc-eEEEecCCchhhhHHHHHHHhcC
Q psy4724 72 QQPKGH-AMLITIGGSGAAEVTKLATFMNE 100 (1650)
Q Consensus 72 ~~p~G~-alLvGvgGSGrqSLtrLAafi~~ 100 (1650)
.+|.|. ..|+|+.||||.||.++.+=...
T Consensus 12 ~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 467774 45999999999999997665543
No 153
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=57.85 E-value=1.6e+02 Score=29.76 Aligned_cols=60 Identities=22% Similarity=0.226 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhccHHHHHHHHHHHHhh
Q psy4724 789 KLQALRDELAQKSKDKKELEDQIELCKQKLERAEKLIGGLGGEKTRWSEASANLSKALVN 848 (1650)
Q Consensus 789 ~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~~Li~~L~~E~~rW~~~~~~~~~~~~~ 848 (1650)
+-..++.++..+..+....+..++.++.++..-++-|..|.++-..|+.....+...+..
T Consensus 71 rEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~ 130 (155)
T 2efr_A 71 KEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQ 130 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444444444444444444444444445555555555555543
No 154
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=57.71 E-value=33 Score=29.87 Aligned_cols=34 Identities=24% Similarity=0.230 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4724 778 SKRAQLATVLGKLQALRDELAQKSKDKKELEDQI 811 (1650)
Q Consensus 778 ~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~ 811 (1650)
.+.++|..-++.|+.|+.++++...+...|+.++
T Consensus 30 ~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseL 63 (72)
T 3nmd_A 30 EKIEELRQRDALIDELELELDQKDELIQMLQNEL 63 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444444444444444444444
No 155
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=57.28 E-value=1.3e+02 Score=28.37 Aligned_cols=42 Identities=10% Similarity=0.312 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4724 782 QLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKLERAEK 823 (1650)
Q Consensus 782 ~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~~ 823 (1650)
.+.-++.++.-++..|..--...+++..+.+..+..+....+
T Consensus 63 ~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~ 104 (110)
T 2v4h_A 63 TVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQR 104 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHHH
Confidence 444455567777777766666666666666666666655444
No 156
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=57.19 E-value=7.5 Score=40.61 Aligned_cols=29 Identities=14% Similarity=0.078 Sum_probs=22.1
Q ss_pred CCceEEEecCCchhhhHHHHHHHhcCCce
Q psy4724 75 KGHAMLITIGGSGAAEVTKLATFMNEYVL 103 (1650)
Q Consensus 75 ~G~alLvGvgGSGrqSLtrLAafi~~~~~ 103 (1650)
.-+.+|+|..||||.|+++.-+--.++.+
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~~~~~ 39 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKSGLKY 39 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHCCEE
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhCCeE
Confidence 34789999999999999986554445444
No 157
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=57.13 E-value=32 Score=29.95 Aligned_cols=43 Identities=9% Similarity=0.130 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4724 763 AEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKK 805 (1650)
Q Consensus 763 ~~~e~~l~~~~~~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~ 805 (1650)
.+++..+....++|..+...+.+++..|++..........+.+
T Consensus 22 ~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLD 64 (72)
T 3nmd_A 22 RDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELD 64 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444444433
No 158
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=56.69 E-value=6.4 Score=42.44 Aligned_cols=25 Identities=16% Similarity=0.142 Sum_probs=19.5
Q ss_pred CCCceEEEecCCchhhhHHHHHHHh
Q psy4724 74 PKGHAMLITIGGSGAAEVTKLATFM 98 (1650)
Q Consensus 74 p~G~alLvGvgGSGrqSLtrLAafi 98 (1650)
++-...++|..||||.||+++-+-+
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3446779999999999999865544
No 159
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=56.54 E-value=6.7 Score=41.33 Aligned_cols=32 Identities=19% Similarity=0.460 Sum_probs=23.6
Q ss_pred CCCC-ceEEEecCCchhhhHHHHHHHh-cCCceE
Q psy4724 73 QPKG-HAMLITIGGSGAAEVTKLATFM-NEYVLF 104 (1650)
Q Consensus 73 ~p~G-~alLvGvgGSGrqSLtrLAafi-~~~~~f 104 (1650)
.|+| +.+|+|..||||.|+++.-+-. .|+.++
T Consensus 7 ~~~~~~I~l~G~~GsGKSTv~~~La~~l~g~~~i 40 (184)
T 1y63_A 7 QPKGINILITGTPGTGKTSMAEMIAAELDGFQHL 40 (184)
T ss_dssp CCSSCEEEEECSTTSSHHHHHHHHHHHSTTEEEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHhcCCCEEe
Confidence 3444 6889999999999998865544 565544
No 160
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=56.51 E-value=5.2 Score=42.25 Aligned_cols=23 Identities=17% Similarity=0.232 Sum_probs=19.1
Q ss_pred CceEEEecCCchhhhHHHHHHHh
Q psy4724 76 GHAMLITIGGSGAAEVTKLATFM 98 (1650)
Q Consensus 76 G~alLvGvgGSGrqSLtrLAafi 98 (1650)
....|+|+.||||.||.|+-+=.
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 36789999999999998876543
No 161
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=55.90 E-value=72 Score=28.30 Aligned_cols=50 Identities=20% Similarity=0.230 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4724 769 YAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKL 818 (1650)
Q Consensus 769 l~~~~~~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl 818 (1650)
+..++++|+..+..=.++.+-=..|+.-+....++...++..++.++.|.
T Consensus 20 ~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~ 69 (78)
T 3iv1_A 20 MDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKD 69 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444443333333333334444444444455555555555555444
No 162
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=55.40 E-value=9.9 Score=45.17 Aligned_cols=32 Identities=13% Similarity=-0.061 Sum_probs=24.1
Q ss_pred cCCCC-ceEEEecCCchhhhHHHHHHHhcCCce
Q psy4724 72 QQPKG-HAMLITIGGSGAAEVTKLATFMNEYVL 103 (1650)
Q Consensus 72 ~~p~G-~alLvGvgGSGrqSLtrLAafi~~~~~ 103 (1650)
..|.| ..+|+|..||||.||+++.+-..+..+
T Consensus 165 ~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~ 197 (377)
T 1svm_A 165 NIPKKRYWLFKGPIDSGKTTLAAALLELCGGKA 197 (377)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEE
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcE
Confidence 45555 678999999999999997775444443
No 163
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=55.13 E-value=5.7 Score=42.56 Aligned_cols=24 Identities=17% Similarity=0.097 Sum_probs=18.9
Q ss_pred CCCceEEEecCCchhhhHHHHHHH
Q psy4724 74 PKGHAMLITIGGSGAAEVTKLATF 97 (1650)
Q Consensus 74 p~G~alLvGvgGSGrqSLtrLAaf 97 (1650)
|+-...|||+.||||.||.++-+-
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 344678999999999999997653
No 164
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=54.96 E-value=6.5 Score=42.03 Aligned_cols=26 Identities=19% Similarity=0.180 Sum_probs=20.7
Q ss_pred CCCCceEEEecCCchhhhHHHHHHHh
Q psy4724 73 QPKGHAMLITIGGSGAAEVTKLATFM 98 (1650)
Q Consensus 73 ~p~G~alLvGvgGSGrqSLtrLAafi 98 (1650)
.++....|+|+.||||.||.|+-+-.
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45557889999999999998876543
No 165
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=54.95 E-value=5.7 Score=42.36 Aligned_cols=22 Identities=9% Similarity=0.347 Sum_probs=19.5
Q ss_pred cCCCCceEEEecCCchhhhHHH
Q psy4724 72 QQPKGHAMLITIGGSGAAEVTK 93 (1650)
Q Consensus 72 ~~p~G~alLvGvgGSGrqSLtr 93 (1650)
..+.+..+++|.+|+||.||.+
T Consensus 22 ~~~~~ki~lvG~~~vGKSsLi~ 43 (198)
T 1f6b_A 22 YKKTGKLVFLGLDNAGKTTLLH 43 (198)
T ss_dssp TTCCEEEEEEEETTSSHHHHHH
T ss_pred cCCCcEEEEECCCCCCHHHHHH
Confidence 4667899999999999999976
No 166
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=54.78 E-value=6.3 Score=46.87 Aligned_cols=36 Identities=22% Similarity=0.409 Sum_probs=26.7
Q ss_pred cCCCCceEEEecCCchhhhHHHHHH-Hhc---CCceEEEE
Q psy4724 72 QQPKGHAMLITIGGSGAAEVTKLAT-FMN---EYVLFEIE 107 (1650)
Q Consensus 72 ~~p~G~alLvGvgGSGrqSLtrLAa-fi~---~~~~fqIe 107 (1650)
-.|+|..+++|+.||||.||.++.+ ++. +..+..++
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e 172 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIE 172 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEE
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEec
Confidence 4688899999999999999887654 443 23555555
No 167
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=54.27 E-value=1.2e+02 Score=28.37 Aligned_cols=40 Identities=13% Similarity=0.167 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4724 779 KRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKL 818 (1650)
Q Consensus 779 ~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl 818 (1650)
.++.|.+.++.+++++.++.+..++.+.++......+..+
T Consensus 35 LKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~ 74 (103)
T 4h22_A 35 LKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQF 74 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555555555554444444
No 168
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=54.12 E-value=6.5 Score=40.94 Aligned_cols=22 Identities=32% Similarity=0.389 Sum_probs=18.5
Q ss_pred CCCC-ceEEEecCCchhhhHHHH
Q psy4724 73 QPKG-HAMLITIGGSGAAEVTKL 94 (1650)
Q Consensus 73 ~p~G-~alLvGvgGSGrqSLtrL 94 (1650)
.+.| -..|+|..||||.||.|.
T Consensus 6 i~~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 6 IPELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp EESSEEEEEECCTTSCHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHH
Confidence 3455 567999999999999997
No 169
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=54.12 E-value=17 Score=42.74 Aligned_cols=23 Identities=13% Similarity=0.235 Sum_probs=18.2
Q ss_pred CceEEEecCCchhhhHHHHHHHh
Q psy4724 76 GHAMLITIGGSGAAEVTKLATFM 98 (1650)
Q Consensus 76 G~alLvGvgGSGrqSLtrLAafi 98 (1650)
.-.+|||++||||.||.+.-|..
T Consensus 158 ~vi~lvG~nGsGKTTll~~Lag~ 180 (359)
T 2og2_A 158 AVIMIVGVNGGGKTTSLGKLAHR 180 (359)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHHHHhh
Confidence 36789999999999987655544
No 170
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=53.90 E-value=51 Score=32.46 Aligned_cols=86 Identities=14% Similarity=0.230 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhchhhccHHHHH
Q psy4724 761 KLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKL-ERAEKLIGGLGGEKTRWSEAS 839 (1650)
Q Consensus 761 ~l~~~e~~l~~~~~~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl-~ra~~Li~~L~~E~~rW~~~~ 839 (1650)
.++.+..++..+...+.....++..+.+.+..-+..-..+..++..++.+++.....| +-|.+.+..=..++..-....
T Consensus 26 ~le~l~~~l~~l~~~l~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTasLFeEAN~MVa~ar~~~~~~e~r~ 105 (135)
T 2e7s_A 26 NYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNLVADARMEKYAIEILN 105 (135)
T ss_dssp HHHHHHHHHHHHHHHTTTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334455555555555555555555555555566666777777777777777666 667777766555555555555
Q ss_pred HHHHHHH
Q psy4724 840 ANLSKAL 846 (1650)
Q Consensus 840 ~~~~~~~ 846 (1650)
..++.++
T Consensus 106 ~~L~~ql 112 (135)
T 2e7s_A 106 KRLTEQL 112 (135)
T ss_dssp HHHHHTT
T ss_pred HHHHHHH
Confidence 5554443
No 171
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=53.87 E-value=1.9e+02 Score=29.15 Aligned_cols=87 Identities=11% Similarity=0.124 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhccHHHHHH
Q psy4724 761 KLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKLERAEKLIGGLGGEKTRWSEASA 840 (1650)
Q Consensus 761 ~l~~~e~~l~~~~~~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~~Li~~L~~E~~rW~~~~~ 840 (1650)
++..++.++..+............++..++..+...++.+....+..+..+..++..|.....=+.+|..--..-...-.
T Consensus 53 r~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~~nlKsLE~~eekas~rE~ 132 (147)
T 2b9c_A 53 KMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEDKVEELLSKNY 132 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHH
Confidence 34444444444444444444444444444444444444444444444444444444444444444444433333344344
Q ss_pred HHHHHHh
Q psy4724 841 NLSKALV 847 (1650)
Q Consensus 841 ~~~~~~~ 847 (1650)
.++.++.
T Consensus 133 ~yee~I~ 139 (147)
T 2b9c_A 133 HLENEVA 139 (147)
T ss_dssp HHHHHHT
T ss_pred HHHHHHH
Confidence 4444443
No 172
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=53.66 E-value=25 Score=44.41 Aligned_cols=58 Identities=17% Similarity=0.209 Sum_probs=36.2
Q ss_pred CCcceeehHHHHHHHHHHHHHhc---CCCCceEEEecCCchhhhHHHHHHHh-----cCC--ceEEEEEcc
Q psy4724 50 KPIDIVTFLYIIQHISRLCRILQ---QPKGHAMLITIGGSGAAEVTKLATFM-----NEY--VLFEIEILK 110 (1650)
Q Consensus 50 ~~m~lVlF~~ai~Hv~rI~Ril~---~p~G~alLvGvgGSGrqSLtrLAafi-----~~~--~~fqIeitk 110 (1650)
.+-++|=-++-++.+ .+.|. ...+-++++|+||+||.+|++-.+.- ..+ .++-+.++.
T Consensus 122 ~~~~~vGR~~~l~~L---~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~ 189 (591)
T 1z6t_A 122 RPVVFVTRKKLVNAI---QQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGK 189 (591)
T ss_dssp CCSSCCCCHHHHHHH---HHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEES
T ss_pred CCCeecccHHHHHHH---HHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCC
Confidence 334566556655544 44454 23456889999999999998765431 122 366666653
No 173
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=53.60 E-value=8.3 Score=41.21 Aligned_cols=29 Identities=17% Similarity=0.329 Sum_probs=22.3
Q ss_pred CCCceEEEecCCchhhhHHHHHHHhcCCc
Q psy4724 74 PKGHAMLITIGGSGAAEVTKLATFMNEYV 102 (1650)
Q Consensus 74 p~G~alLvGvgGSGrqSLtrLAafi~~~~ 102 (1650)
++-...|+|..||||.||+|+-+-..|+.
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~g~~ 56 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADETGLE 56 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHCCE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhCCe
Confidence 34478899999999999999876544543
No 174
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=52.96 E-value=65 Score=30.03 Aligned_cols=26 Identities=23% Similarity=0.207 Sum_probs=10.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4724 757 PKKAKLAEAEADYAVQMEKLNSKRAQ 782 (1650)
Q Consensus 757 P~~~~l~~~e~~l~~~~~~L~~~~~~ 782 (1650)
-++..+++.++.+...+.++..+..+
T Consensus 34 lLKD~LEe~eE~~aql~Re~~eK~re 59 (103)
T 4h22_A 34 TLKDMLLELEEQLAESRRQYEEKNKE 59 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444333333333
No 175
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=52.90 E-value=10 Score=42.58 Aligned_cols=55 Identities=9% Similarity=0.100 Sum_probs=38.3
Q ss_pred CHHHHHHHHHHHHHHHhccCCCCCcceeehHHHHHHHHHHHHHhc-CCCCceEEEecCCchhhhHHH-HHHH
Q psy4724 28 NLDLLTEKINQYIVDYNTQNSNKPIDIVTFLYIIQHISRLCRILQ-QPKGHAMLITIGGSGAAEVTK-LATF 97 (1650)
Q Consensus 28 ~~~~l~~~l~~~l~~yN~~~~~~~m~lVlF~~ai~Hv~rI~Ril~-~p~G~alLvGvgGSGrqSLtr-LAaf 97 (1650)
+++.+.++| .||. +|.+.|..++.+...= + .++.+.+|.|++|+||..|++ ||.+
T Consensus 71 ~~n~i~~~l-----~~qg------~~~~~~~~~l~~~l~~----~~~~~n~~~l~GppgtGKt~~a~ala~~ 127 (267)
T 1u0j_A 71 SSNRIYKIL-----ELNG------YDPQYAASVFLGWATK----KFGKRNTIWLFGPATTGKTNIAEAIAHT 127 (267)
T ss_dssp GGCHHHHHH-----HHTT------CCHHHHHHHHHHHHTT----CSTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred chHHHHHHH-----HHcC------CCHHHHHHHHHHHHhC----CCCCCcEEEEECCCCCCHHHHHHHHHhh
Confidence 455555555 5553 5677888887666541 2 336789999999999999999 4443
No 176
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=52.76 E-value=68 Score=28.03 Aligned_cols=44 Identities=11% Similarity=0.230 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4724 772 QMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCK 815 (1650)
Q Consensus 772 ~~~~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~ 815 (1650)
+..+|++.+.+=..++++|..++.+++.+..+...++.++....
T Consensus 5 ~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~ 48 (72)
T 3cve_A 5 SHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLL 48 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555566666777777777776666666665554433
No 177
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=52.74 E-value=18 Score=41.46 Aligned_cols=23 Identities=13% Similarity=0.235 Sum_probs=18.2
Q ss_pred CceEEEecCCchhhhHHHHHHHh
Q psy4724 76 GHAMLITIGGSGAAEVTKLATFM 98 (1650)
Q Consensus 76 G~alLvGvgGSGrqSLtrLAafi 98 (1650)
.-.+|||++||||.||.+.-|..
T Consensus 101 ~vi~lvG~nGsGKTTll~~Lag~ 123 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSLGKLAHR 123 (302)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 36779999999999987655544
No 178
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=52.69 E-value=1.2e+02 Score=26.89 Aligned_cols=57 Identities=12% Similarity=0.225 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4724 764 EAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKLER 820 (1650)
Q Consensus 764 ~~e~~l~~~~~~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~r 820 (1650)
+++..|+.-...-+..+.+|..+......++.++.++..+.+.|..+++..+.+++.
T Consensus 14 eLQSALeaEIqAKQ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~ee 70 (81)
T 1wt6_A 14 ELQEALEEEVLTRQSLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMEL 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445444444445556666666666666666666666666666666666555543
No 179
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=52.66 E-value=33 Score=30.55 Aligned_cols=48 Identities=13% Similarity=0.198 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4724 769 YAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQ 816 (1650)
Q Consensus 769 l~~~~~~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~ 816 (1650)
-+.+..+|+..+.+=..++++|..++.+++.+..+...++.++.....
T Consensus 8 ~e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e 55 (79)
T 3cvf_A 8 REETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQ 55 (79)
T ss_dssp --CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666677777777777777777777766666654443
No 180
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=52.41 E-value=11 Score=39.13 Aligned_cols=28 Identities=7% Similarity=-0.002 Sum_probs=21.5
Q ss_pred ceEEEecCCchhhhHHHHHHHhcCCceE
Q psy4724 77 HAMLITIGGSGAAEVTKLATFMNEYVLF 104 (1650)
Q Consensus 77 ~alLvGvgGSGrqSLtrLAafi~~~~~f 104 (1650)
..+|+|+.||||.|++|.-+--.++..+
T Consensus 5 ~i~l~G~~GsGKST~a~~La~~l~~~~~ 32 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQSVLPEPWL 32 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHSSSCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCCeE
Confidence 5789999999999999876655454433
No 181
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=52.39 E-value=61 Score=40.87 Aligned_cols=62 Identities=19% Similarity=0.206 Sum_probs=35.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4724 757 PKKAKLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKL 818 (1650)
Q Consensus 757 P~~~~l~~~e~~l~~~~~~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl 818 (1650)
-.+++.+..+.++...+++.++++++++.+++++.+++..+++..+...+++++.+....++
T Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~ 574 (597)
T 3oja_B 513 HLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKV 574 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 33445555555555555555555566666666666666666666666666666655555444
No 182
>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4
Probab=52.05 E-value=2.9e+02 Score=30.90 Aligned_cols=59 Identities=8% Similarity=0.154 Sum_probs=43.5
Q ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4724 754 IVGPKKAKLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIE 812 (1650)
Q Consensus 754 ~v~P~~~~l~~~e~~l~~~~~~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~ 812 (1650)
.+.|+..-..+.+.............+..+......+...+..|....++.+.+....+
T Consensus 96 v~~~l~~~~~~~~~~rK~~~~~~~k~~k~~~~~~~~l~KaKk~Y~~~~~e~e~a~~~~~ 154 (301)
T 2efk_A 96 VCLELTKYSQEMKQERKMHFQEGRRAQQQLENGFKQLENSKRKFERDCREAEKAAQTAE 154 (301)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677776777777777777777788888888888888888888888777766655443
No 183
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=51.87 E-value=7.2 Score=41.68 Aligned_cols=23 Identities=22% Similarity=0.001 Sum_probs=18.9
Q ss_pred CceEEEecCCchhhhHHHHHHHh
Q psy4724 76 GHAMLITIGGSGAAEVTKLATFM 98 (1650)
Q Consensus 76 G~alLvGvgGSGrqSLtrLAafi 98 (1650)
-...|+|..||||.||+++-+-.
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 36789999999999999876543
No 184
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=51.54 E-value=1e+02 Score=27.27 Aligned_cols=54 Identities=20% Similarity=0.268 Sum_probs=29.1
Q ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4724 751 VIKIVGPKKAKLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQI 811 (1650)
Q Consensus 751 v~~~v~P~~~~l~~~e~~l~~~~~~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~ 811 (1650)
.+++|.-+|-++.+++.+-.+.+..|. ...+.++.|+.++....++...|+.++
T Consensus 24 L~qEi~~Lr~kv~elEnErlQyEkKLK-------sTK~El~~Lq~qLe~kd~ei~rL~~~l 77 (81)
T 3qh9_A 24 LLQELRHLKIKVEELENERNQYEWKLK-------ATKAEVAQLQEQVALKDAEIERLHSQL 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-------hhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 345555555555555555444444444 334555566666666666666555543
No 185
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=51.00 E-value=7.8 Score=40.68 Aligned_cols=24 Identities=13% Similarity=0.195 Sum_probs=19.1
Q ss_pred CCceEEEecCCchhhhHHHHHHHh
Q psy4724 75 KGHAMLITIGGSGAAEVTKLATFM 98 (1650)
Q Consensus 75 ~G~alLvGvgGSGrqSLtrLAafi 98 (1650)
+--..|+|+.||||.||.++.+-.
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 345789999999999999876543
No 186
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=50.95 E-value=8.2 Score=39.78 Aligned_cols=29 Identities=21% Similarity=0.304 Sum_probs=22.5
Q ss_pred CceEEEecCCchhhhHHHHHHHhcCCceE
Q psy4724 76 GHAMLITIGGSGAAEVTKLATFMNEYVLF 104 (1650)
Q Consensus 76 G~alLvGvgGSGrqSLtrLAafi~~~~~f 104 (1650)
.|.+|.|..||||.|++++-+--.|+.++
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~i 36 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVL 36 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 47899999999999999876554465443
No 187
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=50.71 E-value=15 Score=42.67 Aligned_cols=66 Identities=12% Similarity=0.220 Sum_probs=44.1
Q ss_pred ceEEEecCCchhhhHHH-HHHHhcCCceEE--------------------------------EEE-cccCCcchhHHHHH
Q psy4724 77 HAMLITIGGSGAAEVTK-LATFMNEYVLFE--------------------------------IEI-LKTYGLTDWRDDLC 122 (1650)
Q Consensus 77 ~alLvGvgGSGrqSLtr-LAafi~~~~~fq--------------------------------Iei-tk~Yg~~~f~eDLk 122 (1650)
..+|+|+.||||.+|++ ||..+ +..+.. +++ ...|+..+|+++-.
T Consensus 42 lIvI~GPTgsGKTtLa~~LA~~l-~~eiIs~Ds~qvYr~mdIgTakp~~eE~~gvphhlidi~~~~~e~~s~~~F~~~a~ 120 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSIDLAAHF-PLEVINSDKMQVYKGLDITTNKISVPDRGGVPHHLLGEVDPARGELTPADFRSLAG 120 (339)
T ss_dssp EEEEECSTTSSHHHHHHHHHTTS-CEEEEECCSSTTBSSCTTTTTCCCSGGGTTCCEESSSCBCGGGCCCCHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHC-CCcEEcccccccccceeeecCCCCHHHHcCCCEeeccccCcccCccCHHHHHHHHH
Confidence 57899999999999986 45444 322211 123 46788889999887
Q ss_pred HHHHHhccCCCCCEEEEEecCCc
Q psy4724 123 RLMKKSGGKDAKPMTFLFSDTQI 145 (1650)
Q Consensus 123 ~l~~~~g~~~~k~~vFl~tD~qI 145 (1650)
.++...- ..+.++++.+-+-.
T Consensus 121 ~~i~~i~--~~g~~pIlvGGtgl 141 (339)
T 3a8t_A 121 KAVSEIT--GRRKLPVLVGGSNS 141 (339)
T ss_dssp HHHHHHH--HTTCEEEEECCCHH
T ss_pred HHHHHHH--hcCCeEEEEcCHHH
Confidence 7776543 34556666666653
No 188
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=50.69 E-value=16 Score=42.04 Aligned_cols=73 Identities=16% Similarity=0.303 Sum_probs=49.1
Q ss_pred eEEEecCCchhhhHHH-HHHHhcC----------Cc---------------------eEEEEEcccCCcchhHHHHHHHH
Q psy4724 78 AMLITIGGSGAAEVTK-LATFMNE----------YV---------------------LFEIEILKTYGLTDWRDDLCRLM 125 (1650)
Q Consensus 78 alLvGvgGSGrqSLtr-LAafi~~----------~~---------------------~fqIeitk~Yg~~~f~eDLk~l~ 125 (1650)
.+++|+.||||.+|++ ||....+ |. +-.+++...|+..+|.++.++.+
T Consensus 6 i~i~GptgsGKt~la~~La~~~~~~iis~Ds~QvYr~~~igTakp~~~E~~gvphhlid~~~~~e~~s~~~F~~~a~~~i 85 (322)
T 3exa_A 6 VAIVGPTAVGKTKTSVMLAKRLNGEVISGDSMQVYRGMDIGTAKITAEEMDGVPHHLIDIKDPSESFSVADFQDLATPLI 85 (322)
T ss_dssp EEEECCTTSCHHHHHHHHHHTTTEEEEECCGGGGBTTCCTTTTCCCHHHHTTCCEESSSCBCTTSCCCHHHHHHHHHHHH
T ss_pred EEEECCCcCCHHHHHHHHHHhCccceeecCcccceeeeeecCCCCCHHHHcCCCEEEeccCChhhhccHHHHHHHHHHHH
Confidence 4689999999999975 5554432 11 01123345688999999998888
Q ss_pred HHhccCCCCCEEEEEecCCcCchhhHHHHHHHHh
Q psy4724 126 KKSGGKDAKPMTFLFSDTQIQNEVFVEHINMLLN 159 (1650)
Q Consensus 126 ~~~g~~~~k~~vFl~tD~qI~~E~fLedIN~lL~ 159 (1650)
...- ..+.++++.+-|.. ||+.+|.
T Consensus 86 ~~i~--~~gk~pIlVGGTgl-------Yi~aLl~ 110 (322)
T 3exa_A 86 TEIH--ERGRLPFLVGGTGL-------YVNAVIH 110 (322)
T ss_dssp HHHH--HTTCEEEEESCCHH-------HHHHHHH
T ss_pred HHHH--hCCCcEEEEcCcHH-------HHHHHHc
Confidence 7654 34457778887764 5666663
No 189
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=50.55 E-value=15 Score=43.03 Aligned_cols=46 Identities=11% Similarity=0.069 Sum_probs=28.9
Q ss_pred hHHHHHHHHHHHHHhcCC--CCceEEEecCCchhhhHHHHHHHhcCCc
Q psy4724 57 FLYIIQHISRLCRILQQP--KGHAMLITIGGSGAAEVTKLATFMNEYV 102 (1650)
Q Consensus 57 F~~ai~Hv~rI~Ril~~p--~G~alLvGvgGSGrqSLtrLAafi~~~~ 102 (1650)
++...+.+....+..-.+ +-+.+|+|..||||.|+.|.-|-..++.
T Consensus 4 ~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~~~ 51 (359)
T 2ga8_A 4 THKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIINEK 51 (359)
T ss_dssp HHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 444555544433322122 2358999999999999999776655543
No 190
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=50.24 E-value=9.8 Score=39.13 Aligned_cols=28 Identities=11% Similarity=-0.051 Sum_probs=21.2
Q ss_pred ceEEEecCCchhhhHHHHHHHhcCCceE
Q psy4724 77 HAMLITIGGSGAAEVTKLATFMNEYVLF 104 (1650)
Q Consensus 77 ~alLvGvgGSGrqSLtrLAafi~~~~~f 104 (1650)
..+|+|+.||||.|+++.-+=-.++.++
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i 30 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPII 30 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeee
Confidence 3679999999999998876544465543
No 191
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=50.04 E-value=8.6 Score=44.22 Aligned_cols=28 Identities=14% Similarity=0.111 Sum_probs=22.0
Q ss_pred hcCCCC-ceEEEecCCchhhhHHHHHHHh
Q psy4724 71 LQQPKG-HAMLITIGGSGAAEVTKLATFM 98 (1650)
Q Consensus 71 l~~p~G-~alLvGvgGSGrqSLtrLAafi 98 (1650)
+..|.| ...|||..||||.||.++-+=+
T Consensus 121 l~i~~Ge~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 121 KGIPKKNCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp HTCTTCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred EEecCCCEEEEECCCCCcHHHHHHHHhhh
Confidence 466767 5569999999999999976544
No 192
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=49.84 E-value=7.3 Score=42.15 Aligned_cols=25 Identities=12% Similarity=0.089 Sum_probs=21.1
Q ss_pred CCCceEEEecCCchhhhHHHHHHHh
Q psy4724 74 PKGHAMLITIGGSGAAEVTKLATFM 98 (1650)
Q Consensus 74 p~G~alLvGvgGSGrqSLtrLAafi 98 (1650)
++....|+|..||||.||.|+.+=+
T Consensus 21 ~Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 21 TNTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp HCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4556779999999999999988755
No 193
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=49.83 E-value=94 Score=28.75 Aligned_cols=29 Identities=21% Similarity=0.383 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4724 772 QMEKLNSKRAQLATVLGKLQALRDELAQK 800 (1650)
Q Consensus 772 ~~~~L~~~~~~l~~~~~~l~~l~~~~~~~ 800 (1650)
++.++...+.++..++..+..|+..+..-
T Consensus 10 lre~l~~le~~~~~~~~e~~~L~~~l~eE 38 (97)
T 2eqb_B 10 LKEDYNTLKRELSDRDDEVKRLREDIAKE 38 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 33333333333333333333333333333
No 194
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=49.56 E-value=10 Score=39.41 Aligned_cols=26 Identities=19% Similarity=0.264 Sum_probs=20.6
Q ss_pred ceEEEecCCchhhhHHHHHHHhcCCc
Q psy4724 77 HAMLITIGGSGAAEVTKLATFMNEYV 102 (1650)
Q Consensus 77 ~alLvGvgGSGrqSLtrLAafi~~~~ 102 (1650)
+.+|+|+.||||.|++|.-|--.++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~ 31 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLV 31 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 58899999999999998765444543
No 195
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=49.48 E-value=81 Score=42.68 Aligned_cols=21 Identities=19% Similarity=0.251 Sum_probs=16.5
Q ss_pred CCceEEEecCCchhhhHHHHH
Q psy4724 75 KGHAMLITIGGSGAAEVTKLA 95 (1650)
Q Consensus 75 ~G~alLvGvgGSGrqSLtrLA 95 (1650)
....++.|-.||||..-|++.
T Consensus 156 ~QsIiisGESGAGKTe~~K~i 176 (1080)
T 2dfs_A 156 NQSIIVSGESGAGKTVSAKYA 176 (1080)
T ss_dssp CEEEEEECSTTSSHHHHHHHH
T ss_pred CcEEEEcCCCCCCccchHHHH
Confidence 345667799999999888765
No 196
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=49.28 E-value=1.5e+02 Score=34.71 Aligned_cols=56 Identities=21% Similarity=0.280 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4724 761 KLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQ 816 (1650)
Q Consensus 761 ~l~~~e~~l~~~~~~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~ 816 (1650)
++..+++++..++..++.++..+.......+..++.+.++.+++..++..+.....
T Consensus 357 RlddArNEItsaeSaInslqaqvSa~t~e~k~A~d~l~a~~kek~~~~n~~a~~~~ 412 (602)
T 1cii_A 357 RLLDARNKITSAESAVNSARNNLSARTNEQKHANDALNALLKEKENIRNQLSGINQ 412 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 35555555555555555555555555555555555555555555555444433333
No 197
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=49.02 E-value=7.7 Score=45.40 Aligned_cols=29 Identities=10% Similarity=0.178 Sum_probs=24.3
Q ss_pred cCCCCceEEEecCCchhhhHHHHHHHhcC
Q psy4724 72 QQPKGHAMLITIGGSGAAEVTKLATFMNE 100 (1650)
Q Consensus 72 ~~p~G~alLvGvgGSGrqSLtrLAafi~~ 100 (1650)
....||.||.|..|+||.+|+|..+...+
T Consensus 42 ~~~~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 42 DPGIGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp CGGGCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred CCCCceEEEECCCCccHHHHHHHHHHhCc
Confidence 44578999999999999999988776654
No 198
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=48.98 E-value=9 Score=40.14 Aligned_cols=25 Identities=8% Similarity=0.118 Sum_probs=19.5
Q ss_pred ceEEEecCCchhhhHHHHHHHhcCC
Q psy4724 77 HAMLITIGGSGAAEVTKLATFMNEY 101 (1650)
Q Consensus 77 ~alLvGvgGSGrqSLtrLAafi~~~ 101 (1650)
..+|+|..||||.|++++-+--.|+
T Consensus 6 ~I~l~G~~GsGKST~~~~La~~l~~ 30 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQASRLAQELGF 30 (186)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5789999999999998875533344
No 199
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=48.34 E-value=8.8 Score=40.91 Aligned_cols=27 Identities=11% Similarity=0.151 Sum_probs=19.8
Q ss_pred cCCCC-ceEEEecCCchhhhHHHHHHHh
Q psy4724 72 QQPKG-HAMLITIGGSGAAEVTKLATFM 98 (1650)
Q Consensus 72 ~~p~G-~alLvGvgGSGrqSLtrLAafi 98 (1650)
.++.| -..|+|+.||||.||.++-+=.
T Consensus 3 ~m~~g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 3 AMNKANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp --CCCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred cCCCCcEEEEECcCCCCHHHHHHHHHhh
Confidence 34455 5679999999999999876544
No 200
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=48.13 E-value=11 Score=38.77 Aligned_cols=25 Identities=24% Similarity=0.302 Sum_probs=19.2
Q ss_pred eEEEecCCchhhhHHHHHHHhcCCce
Q psy4724 78 AMLITIGGSGAAEVTKLATFMNEYVL 103 (1650)
Q Consensus 78 alLvGvgGSGrqSLtrLAafi~~~~~ 103 (1650)
.+|+|+.||||.|+++.- --.|+.+
T Consensus 4 I~l~G~~GsGKsT~a~~L-~~~g~~~ 28 (179)
T 3lw7_A 4 ILITGMPGSGKSEFAKLL-KERGAKV 28 (179)
T ss_dssp EEEECCTTSCHHHHHHHH-HHTTCEE
T ss_pred EEEECCCCCCHHHHHHHH-HHCCCcE
Confidence 579999999999999877 3334443
No 201
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=48.13 E-value=21 Score=42.42 Aligned_cols=66 Identities=11% Similarity=0.179 Sum_probs=44.7
Q ss_pred ceEEEecCCchhhhHHH-HHHHhcCCceEE--------------------------------EEEcccCCcchhHHHHHH
Q psy4724 77 HAMLITIGGSGAAEVTK-LATFMNEYVLFE--------------------------------IEILKTYGLTDWRDDLCR 123 (1650)
Q Consensus 77 ~alLvGvgGSGrqSLtr-LAafi~~~~~fq--------------------------------Ieitk~Yg~~~f~eDLk~ 123 (1650)
-..++|+.||||.+|++ ||.... ..+.. ++....|+..+|.++-+.
T Consensus 4 ~i~i~GptgsGKttla~~La~~~~-~~iis~Ds~QvYr~l~i~T~kp~~~E~~gv~hhlid~~~~~~~~s~~~F~~~a~~ 82 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSIQLAQKFN-GEVINSDSMQVYKDIPIITNKHPLQEREGIPHHVMNHVDWSEEYYSHRFETECMN 82 (409)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHT-EEEEECCTTTTBSSCTTTTTCCCGGGTTTCCEESCSCBCTTSCCCHHHHHHHHHH
T ss_pred EEEEECcchhhHHHHHHHHHHHCC-CeEeecCccceecccccccCCCCHHHHcCchhhcCCccChHhHhhHHHHHHHHHH
Confidence 35789999999999974 555443 22221 123345888899999888
Q ss_pred HHHHhccCCCCCEEEEEecCCc
Q psy4724 124 LMKKSGGKDAKPMTFLFSDTQI 145 (1650)
Q Consensus 124 l~~~~g~~~~k~~vFl~tD~qI 145 (1650)
.+...- ..+.+++|.+-|..
T Consensus 83 ~i~~i~--~~g~~pilVGGTgl 102 (409)
T 3eph_A 83 AIEDIH--RRGKIPIVVGGTHY 102 (409)
T ss_dssp HHHHHH--TTTCEEEEECSCGG
T ss_pred HHHHHH--hcCCCEEEECChHH
Confidence 877654 34557777887775
No 202
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=48.08 E-value=7.8 Score=40.76 Aligned_cols=25 Identities=24% Similarity=0.296 Sum_probs=19.1
Q ss_pred cCCCC-ceEEEecCCchhhhHHHHHH
Q psy4724 72 QQPKG-HAMLITIGGSGAAEVTKLAT 96 (1650)
Q Consensus 72 ~~p~G-~alLvGvgGSGrqSLtrLAa 96 (1650)
+.++| ..+|+|..||||.|+++.-+
T Consensus 9 ~~~~~~~i~l~G~~GsGKsT~~~~L~ 34 (186)
T 2yvu_A 9 CIEKGIVVWLTGLPGSGKTTIATRLA 34 (186)
T ss_dssp CCSCCEEEEEECCTTSSHHHHHHHHH
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHH
Confidence 33344 67899999999999987543
No 203
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=48.03 E-value=8 Score=40.69 Aligned_cols=24 Identities=13% Similarity=0.059 Sum_probs=19.7
Q ss_pred ceEEEecCCchhhhHHHHHHHhcC
Q psy4724 77 HAMLITIGGSGAAEVTKLATFMNE 100 (1650)
Q Consensus 77 ~alLvGvgGSGrqSLtrLAafi~~ 100 (1650)
+..|+|..||||.||.|+-+=..+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 467999999999999887765544
No 204
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=47.69 E-value=1.9e+02 Score=27.84 Aligned_cols=63 Identities=14% Similarity=0.193 Sum_probs=30.7
Q ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4724 754 IVGPKKAKLAEAEADYAVQMEKLNSKRAQLAT--------------VLGKLQALRDELAQKSKDKKELEDQIELCKQ 816 (1650)
Q Consensus 754 ~v~P~~~~l~~~e~~l~~~~~~L~~~~~~l~~--------------~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~ 816 (1650)
.+..+|.++..+...-.....++...+..+.+ ++..+..|++.++++.--+-.|+.+++..+.
T Consensus 21 ~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD~~~l~r~dLE~~iesL~e 97 (119)
T 3ol1_A 21 EMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQE 97 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHH
Confidence 34455555555555444444444444444444 4445555555555555555555544444433
No 205
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=47.50 E-value=11 Score=39.49 Aligned_cols=28 Identities=7% Similarity=0.046 Sum_probs=20.6
Q ss_pred ceEEEecCCchhhhHHHHHHHhcCCceE
Q psy4724 77 HAMLITIGGSGAAEVTKLATFMNEYVLF 104 (1650)
Q Consensus 77 ~alLvGvgGSGrqSLtrLAafi~~~~~f 104 (1650)
..+|+|+.||||.|+++.-+--.++.++
T Consensus 7 ~I~l~G~~GsGKST~~~~L~~~l~~~~i 34 (193)
T 2rhm_A 7 LIIVTGHPATGKTTLSQALATGLRLPLL 34 (193)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEe
Confidence 5689999999999998765433365543
No 206
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4
Probab=47.35 E-value=1.7e+02 Score=33.05 Aligned_cols=39 Identities=8% Similarity=0.202 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4724 770 AVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELE 808 (1650)
Q Consensus 770 ~~~~~~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~ 808 (1650)
....+.....+..+......+...+..|....++.+.++
T Consensus 119 K~~~~~~~k~~k~~~~~~~~l~KaK~~Y~~~~~e~e~a~ 157 (305)
T 2efl_A 119 KSNFHDGRKAQQHIETCWKQLESSKRRFERDCKEADRAQ 157 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444444444444444433
No 207
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=47.21 E-value=10 Score=40.42 Aligned_cols=28 Identities=18% Similarity=0.329 Sum_probs=21.2
Q ss_pred ceEEEecCCchhhhHHHHHHHhcCCceE
Q psy4724 77 HAMLITIGGSGAAEVTKLATFMNEYVLF 104 (1650)
Q Consensus 77 ~alLvGvgGSGrqSLtrLAafi~~~~~f 104 (1650)
..+|+|..||||.||++.-+-..|+.++
T Consensus 20 ~I~l~G~~GsGKSTla~~L~~~lg~~~i 47 (202)
T 3t61_A 20 SIVVMGVSGSGKSSVGEAIAEACGYPFI 47 (202)
T ss_dssp CEEEECSTTSCHHHHHHHHHHHHTCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCEEE
Confidence 6889999999999998765544355443
No 208
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=46.97 E-value=11 Score=39.37 Aligned_cols=30 Identities=10% Similarity=0.432 Sum_probs=24.6
Q ss_pred HHHHHHHhcCCCCceEEEecCCchhhhHHH
Q psy4724 64 ISRLCRILQQPKGHAMLITIGGSGAAEVTK 93 (1650)
Q Consensus 64 v~rI~Ril~~p~G~alLvGvgGSGrqSLtr 93 (1650)
+.++-+.++.+.-+.+++|..|+||.||.+
T Consensus 5 ~~~~~~~~~~~~~~i~v~G~~~~GKssl~~ 34 (187)
T 1zj6_A 5 FTRIWRLFNHQEHKVIIVGLDNAGKTTILY 34 (187)
T ss_dssp HHHHHHHHTTSCEEEEEEESTTSSHHHHHH
T ss_pred HHHHHHhcCCCccEEEEECCCCCCHHHHHH
Confidence 345556667788899999999999999975
No 209
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=46.67 E-value=20 Score=38.44 Aligned_cols=31 Identities=16% Similarity=0.118 Sum_probs=23.6
Q ss_pred HHHHhc--CCCC-ceEEEecCCchhhhHHHHHHH
Q psy4724 67 LCRILQ--QPKG-HAMLITIGGSGAAEVTKLATF 97 (1650)
Q Consensus 67 I~Ril~--~p~G-~alLvGvgGSGrqSLtrLAaf 97 (1650)
+-+++. .|+| -.+|+|.+||||.+|++..+.
T Consensus 9 LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 9 LDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp HHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 344553 5666 568999999999999887766
No 210
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=46.67 E-value=12 Score=44.32 Aligned_cols=35 Identities=23% Similarity=0.193 Sum_probs=26.0
Q ss_pred CCCCceEEEecCCchhhhHHHHHHHhcCC--ceEEEE
Q psy4724 73 QPKGHAMLITIGGSGAAEVTKLATFMNEY--VLFEIE 107 (1650)
Q Consensus 73 ~p~G~alLvGvgGSGrqSLtrLAafi~~~--~~fqIe 107 (1650)
.+++..+++|..||||.||.++-+-.-.. ....|+
T Consensus 173 ~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie 209 (361)
T 2gza_A 173 QLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIE 209 (361)
T ss_dssp HTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEE
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEEC
Confidence 47889999999999999998876544332 344444
No 211
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=46.50 E-value=10 Score=46.77 Aligned_cols=39 Identities=8% Similarity=-0.020 Sum_probs=29.9
Q ss_pred HHHHHHHHHhcCCCC----ceEEEecCCchhhhHHHHHHHhcC
Q psy4724 62 QHISRLCRILQQPKG----HAMLITIGGSGAAEVTKLATFMNE 100 (1650)
Q Consensus 62 ~Hv~rI~Ril~~p~G----~alLvGvgGSGrqSLtrLAafi~~ 100 (1650)
.+|.++.|-..+|++ +..|+|+.||||.|++|+-+--.+
T Consensus 378 peV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~ 420 (511)
T 1g8f_A 378 PEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFL 420 (511)
T ss_dssp HHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHT
T ss_pred hhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHHH
Confidence 567788888777754 478999999999999887555444
No 212
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=46.36 E-value=8 Score=40.83 Aligned_cols=23 Identities=9% Similarity=0.371 Sum_probs=17.3
Q ss_pred cCCCCceEEEecCCchhhhHHHH
Q psy4724 72 QQPKGHAMLITIGGSGAAEVTKL 94 (1650)
Q Consensus 72 ~~p~G~alLvGvgGSGrqSLtrL 94 (1650)
..+.++.+++|.+|+||.||.+-
T Consensus 20 ~~~~~ki~~vG~~~vGKSsli~~ 42 (190)
T 1m2o_B 20 WNKHGKLLFLGLDNAGKTTLLHM 42 (190)
T ss_dssp ----CEEEEEESTTSSHHHHHHH
T ss_pred cCCccEEEEECCCCCCHHHHHHH
Confidence 45678999999999999999763
No 213
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=46.30 E-value=11 Score=38.91 Aligned_cols=26 Identities=19% Similarity=-0.000 Sum_probs=21.4
Q ss_pred CCC-ceEEEecCCchhhhHHHHHHHhc
Q psy4724 74 PKG-HAMLITIGGSGAAEVTKLATFMN 99 (1650)
Q Consensus 74 p~G-~alLvGvgGSGrqSLtrLAafi~ 99 (1650)
+.| -..|+|..||||.||.|.-+=+.
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 566 66799999999999999876653
No 214
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=46.22 E-value=10 Score=39.25 Aligned_cols=21 Identities=19% Similarity=0.120 Sum_probs=17.1
Q ss_pred ceEEEecCCchhhhHHHHHHH
Q psy4724 77 HAMLITIGGSGAAEVTKLATF 97 (1650)
Q Consensus 77 ~alLvGvgGSGrqSLtrLAaf 97 (1650)
..+|+|+.||||.|+++.-+-
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 367999999999999876543
No 215
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=46.13 E-value=10 Score=43.63 Aligned_cols=24 Identities=8% Similarity=0.135 Sum_probs=19.0
Q ss_pred CCceEEEecCCchhhhHHHHHHHh
Q psy4724 75 KGHAMLITIGGSGAAEVTKLATFM 98 (1650)
Q Consensus 75 ~G~alLvGvgGSGrqSLtrLAafi 98 (1650)
+....+||++||||.||.+.-+..
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagl 125 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRY 125 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHH
Confidence 346789999999999987766544
No 216
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=45.85 E-value=2.1e+02 Score=28.93 Aligned_cols=68 Identities=16% Similarity=0.156 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhch
Q psy4724 763 AEAEADYAVQMEKLNSKRAQLATVLGKLQALRDE--------LAQKSKDKKELEDQIELCKQKLERAEKLIGGLGG 830 (1650)
Q Consensus 763 ~~~e~~l~~~~~~L~~~~~~l~~~~~~l~~l~~~--------~~~~~~e~~~l~~~~~~~~~rl~ra~~Li~~L~~ 830 (1650)
..+...+......-...+.....++..|+.|.+. ...+..+...++......+.++.-+..++..|..
T Consensus 61 ~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~~~~l~~lq~ 136 (154)
T 2ocy_A 61 KRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLREKDTLLDTLTL 136 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333444444444444444433 3455566667777777777888888888777644
No 217
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=45.62 E-value=1.7e+02 Score=26.43 Aligned_cols=57 Identities=26% Similarity=0.289 Sum_probs=28.7
Q ss_pred chHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4724 756 GPKKAKLAEAEADYAVQ----MEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIE 812 (1650)
Q Consensus 756 ~P~~~~l~~~e~~l~~~----~~~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~ 812 (1650)
.-++..+.+++..+... +..+...+.+|..+...++....+|+....-|-.|+.++.
T Consensus 13 ~~Le~~l~e~E~~~~~~l~~~q~~i~~lE~el~~~r~e~~~ql~EYq~LlnvK~~Le~EIa 73 (86)
T 1x8y_A 13 AAKEAKLRDLEDSLARERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIH 73 (86)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 34566666666655432 2333334444444444444444555555555555555554
No 218
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=45.42 E-value=18 Score=38.14 Aligned_cols=83 Identities=12% Similarity=0.057 Sum_probs=48.8
Q ss_pred ceEEEecCCchhhhHH-HHHHHh--cCCceEEEEEc--ccCCcchhH------------HHHHHHHHHhccCCCCCEEEE
Q psy4724 77 HAMLITIGGSGAAEVT-KLATFM--NEYVLFEIEIL--KTYGLTDWR------------DDLCRLMKKSGGKDAKPMTFL 139 (1650)
Q Consensus 77 ~alLvGvgGSGrqSLt-rLAafi--~~~~~fqIeit--k~Yg~~~f~------------eDLk~l~~~~g~~~~k~~vFl 139 (1650)
-.++.|..||||.++. ++|.-. .|+.+.=+... ..||...+. .++..++... .+..-+++
T Consensus 5 i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~~d~r~~~~~i~s~~g~~~~~~~~~~~~~~~~~~---~~~~dvvi 81 (184)
T 2orw_A 5 LTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPKIDSRYHSTMIVSHSGNGVEAHVIERPEEMRKYI---EEDTRGVF 81 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC-----CCCEECC----CEECEEESSGGGGGGGC---CTTEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeeccccccCcccEEecCCCceeeEEECCHHHHHHHh---cCCCCEEE
Confidence 4578999999999997 776544 46554433322 234321111 1122223221 23456888
Q ss_pred EecCCcCchhhHHHHHHHHhhhh
Q psy4724 140 FSDTQIQNEVFVEHINMLLNTAR 162 (1650)
Q Consensus 140 ~tD~qI~~E~fLedIN~lL~tge 162 (1650)
+.+.|-.++++++.++.+...|-
T Consensus 82 IDE~Q~~~~~~~~~l~~l~~~~~ 104 (184)
T 2orw_A 82 IDEVQFFNPSLFEVVKDLLDRGI 104 (184)
T ss_dssp ECCGGGSCTTHHHHHHHHHHTTC
T ss_pred EECcccCCHHHHHHHHHHHHCCC
Confidence 88899887778888888877653
No 219
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=45.41 E-value=8.9 Score=41.35 Aligned_cols=34 Identities=18% Similarity=0.253 Sum_probs=24.8
Q ss_pred HHHHHHHHh-cCCCC-ceEEEecCCchhhhHHHHHH
Q psy4724 63 HISRLCRIL-QQPKG-HAMLITIGGSGAAEVTKLAT 96 (1650)
Q Consensus 63 Hv~rI~Ril-~~p~G-~alLvGvgGSGrqSLtrLAa 96 (1650)
+|.++.|-. ..+.| ..+|+|..||||.|+++.-+
T Consensus 11 ~~~~~~r~~~~~~~~~~i~~~G~~GsGKsT~~~~l~ 46 (211)
T 1m7g_A 11 ALTRSERTELRNQRGLTIWLTGLSASGKSTLAVELE 46 (211)
T ss_dssp CCCHHHHHHHHTSSCEEEEEECSTTSSHHHHHHHHH
T ss_pred ccCHHHhhcccCCCCCEEEEECCCCCCHHHHHHHHH
Confidence 455666654 44555 67789999999999988644
No 220
>3k29_A Putative uncharacterized protein; YSCO, type III secretion apparatus, S genomics, csgid; HET: MSE; 2.00A {Chlamydia trachomatis}
Probab=45.37 E-value=2.6e+02 Score=28.39 Aligned_cols=76 Identities=11% Similarity=0.021 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhccHHHHHHHHHHHHhhchhHHHHHHHHHH
Q psy4724 786 VLGKLQALRDELAQKSKDKKELEDQIELCKQKLERAEKLIGGLGGEKTRWSEASANLSKALVNCIGDILICAGIIT 861 (1650)
Q Consensus 786 ~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~~Li~~L~~E~~rW~~~~~~~~~~~~~l~Gd~ll~aa~i~ 861 (1650)
+.++++.++...+++....+.-...++.|..-+..|.+-...+...+.-|............-+--|=+-+++|+.
T Consensus 83 lrErea~lEqkVaeq~e~Ve~e~q~Le~ar~el~qArke~eKfelHrqiwqaE~kre~E~qEElEqEEf~s~~~~~ 158 (169)
T 3k29_A 83 VAIQLSEEEEKVNKQKENVLAASKELERAEVELTKRRKEEEKTRLHKEEWMKEALKEEARQEEKEQDEMGQLLHQL 158 (169)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 6778888888888888888888888888888889999999999555566999998888888777666666666653
No 221
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=45.10 E-value=12 Score=38.52 Aligned_cols=28 Identities=14% Similarity=0.213 Sum_probs=21.3
Q ss_pred ceEEEecCCchhhhHHHHHHHhcCCceE
Q psy4724 77 HAMLITIGGSGAAEVTKLATFMNEYVLF 104 (1650)
Q Consensus 77 ~alLvGvgGSGrqSLtrLAafi~~~~~f 104 (1650)
..+|+|..||||.|+++.-+--.|+.++
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~i 31 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALGYEFV 31 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHTCEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence 4789999999999998876654465433
No 222
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=44.98 E-value=2.9e+02 Score=28.88 Aligned_cols=18 Identities=22% Similarity=0.322 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy4724 781 AQLATVLGKLQALRDELA 798 (1650)
Q Consensus 781 ~~l~~~~~~l~~l~~~~~ 798 (1650)
..+..+...+..++..|.
T Consensus 63 ~~~~~L~~E~e~~k~K~~ 80 (189)
T 2v71_A 63 ADNQRLKYEVEALKEKLE 80 (189)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 223
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=44.56 E-value=1.8e+02 Score=26.22 Aligned_cols=54 Identities=15% Similarity=0.237 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4724 758 KKAKLAEAEADYAVQ----MEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQI 811 (1650)
Q Consensus 758 ~~~~l~~~e~~l~~~----~~~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~ 811 (1650)
+...+.+++..+... +..+...+.+|..+...++....+|+....-|-.|+.++
T Consensus 13 LE~~l~e~e~~~~~~~~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~LlnvK~~Ld~EI 70 (84)
T 1gk4_A 13 LERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEI 70 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 444555555544332 223333334444444444444444444444444555444
No 224
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=44.54 E-value=13 Score=39.07 Aligned_cols=21 Identities=14% Similarity=0.126 Sum_probs=17.9
Q ss_pred ceEEEecCCchhhhHHHHHHH
Q psy4724 77 HAMLITIGGSGAAEVTKLATF 97 (1650)
Q Consensus 77 ~alLvGvgGSGrqSLtrLAaf 97 (1650)
-..|+|+.||||.||.|.-+-
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 357999999999999998763
No 225
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=44.24 E-value=12 Score=40.81 Aligned_cols=27 Identities=11% Similarity=-0.007 Sum_probs=19.4
Q ss_pred cCCCC-ceEEEecCCchhhhHHHHHHHh
Q psy4724 72 QQPKG-HAMLITIGGSGAAEVTKLATFM 98 (1650)
Q Consensus 72 ~~p~G-~alLvGvgGSGrqSLtrLAafi 98 (1650)
..+.| -..|||+.||||.||.++-+=.
T Consensus 19 ~i~~G~~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 19 SMNNIYPLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp ---CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred ecCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 44555 5669999999999999976543
No 226
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=44.20 E-value=9.5 Score=41.74 Aligned_cols=37 Identities=16% Similarity=0.207 Sum_probs=26.2
Q ss_pred CCCC-ceEEEecCCchhhhHHHHHHHhcCCceEEEEEc
Q psy4724 73 QPKG-HAMLITIGGSGAAEVTKLATFMNEYVLFEIEIL 109 (1650)
Q Consensus 73 ~p~G-~alLvGvgGSGrqSLtrLAafi~~~~~fqIeit 109 (1650)
.+.| ...|+|..||||.||.|+-+=+...+-=+|.+.
T Consensus 27 i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~ 64 (224)
T 2pcj_A 27 VKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLE 64 (224)
T ss_dssp EETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEET
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEC
Confidence 3455 566999999999999998765544444455543
No 227
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=44.12 E-value=12 Score=43.53 Aligned_cols=27 Identities=15% Similarity=0.017 Sum_probs=22.5
Q ss_pred CCCCceEEEecCCchhhhHHHHHHHhc
Q psy4724 73 QPKGHAMLITIGGSGAAEVTKLATFMN 99 (1650)
Q Consensus 73 ~p~G~alLvGvgGSGrqSLtrLAafi~ 99 (1650)
.+++..+++|..||||.||.++-+-..
T Consensus 169 ~~g~~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 169 AIGKNVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp HHTCCEEEEESTTSCHHHHHHHGGGGS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999988765443
No 228
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=43.97 E-value=43 Score=39.54 Aligned_cols=73 Identities=18% Similarity=0.256 Sum_probs=54.6
Q ss_pred CHHHHHHHHHHHHHHHhccCC-CCCcceeehHHHHHHHHHHHHHhcCCCCceEEEecCCchhhhHHHHHHHhcC
Q psy4724 28 NLDLLTEKINQYIVDYNTQNS-NKPIDIVTFLYIIQHISRLCRILQQPKGHAMLITIGGSGAAEVTKLATFMNE 100 (1650)
Q Consensus 28 ~~~~l~~~l~~~l~~yN~~~~-~~~m~lVlF~~ai~Hv~rI~Ril~~p~G~alLvGvgGSGrqSLtrLAafi~~ 100 (1650)
+.+.|...+...+..+..... .....++--..++..+.+..+-+.....++|+.|.+|+||..++|+....++
T Consensus 104 ~~~~L~~~i~~~l~~~~~~~~~~~~~~~ig~s~~~~~~~~~~~~~a~~~~~vli~GesGtGKe~lAr~ih~~s~ 177 (368)
T 3dzd_A 104 SVERFLLTIKHAFEEYSKKAPPQEEIEFVGEHPKILEIKRLIPKIAKSKAPVLITGESGTGKEIVARLIHRYSG 177 (368)
T ss_dssp CHHHHHHHHHHHHHHHSCCCCCCCCCCCCCCSHHHHHHHHHHHHHHTSCSCEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHhhhhhcccccccccccchHHHHHHhhhhhhhccchhheEEeCCCchHHHHHHHHHHhcc
Confidence 678899999999988764211 1234455556777777777777777788999999999999999997655543
No 229
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=43.80 E-value=9.4 Score=42.15 Aligned_cols=38 Identities=16% Similarity=0.203 Sum_probs=26.7
Q ss_pred cCCCC-ceEEEecCCchhhhHHHHHHHhcCCceEEEEEc
Q psy4724 72 QQPKG-HAMLITIGGSGAAEVTKLATFMNEYVLFEIEIL 109 (1650)
Q Consensus 72 ~~p~G-~alLvGvgGSGrqSLtrLAafi~~~~~fqIeit 109 (1650)
..+.| ...|+|..||||.||.|+-+=+..-+-=+|.+.
T Consensus 27 ~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~ 65 (235)
T 3tif_A 27 NIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYID 65 (235)
T ss_dssp EECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEET
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEEC
Confidence 34455 667999999999999998775544444455443
No 230
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=43.56 E-value=15 Score=38.96 Aligned_cols=31 Identities=10% Similarity=-0.009 Sum_probs=22.3
Q ss_pred CCC-ceEEEecCCchhhhHHHHHHHhcCCceE
Q psy4724 74 PKG-HAMLITIGGSGAAEVTKLATFMNEYVLF 104 (1650)
Q Consensus 74 p~G-~alLvGvgGSGrqSLtrLAafi~~~~~f 104 (1650)
.+| ..+|+|..||||.|+++.-+--.++.++
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~~l~~~~i 49 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAEKLGIPQI 49 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHHTCCEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence 344 6789999999999999865543355443
No 231
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=43.51 E-value=13 Score=41.59 Aligned_cols=28 Identities=18% Similarity=0.245 Sum_probs=20.6
Q ss_pred ceEEEecCCchhhhHHHHHHHh---cCCceE
Q psy4724 77 HAMLITIGGSGAAEVTKLATFM---NEYVLF 104 (1650)
Q Consensus 77 ~alLvGvgGSGrqSLtrLAafi---~~~~~f 104 (1650)
..+|+|..||||.|+++.-+-- .|+.++
T Consensus 6 lIvl~G~pGSGKSTla~~La~~L~~~g~~~i 36 (260)
T 3a4m_A 6 LIILTGLPGVGKSTFSKNLAKILSKNNIDVI 36 (260)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhCCCEEE
Confidence 5789999999999998864433 455444
No 232
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=43.45 E-value=15 Score=38.20 Aligned_cols=31 Identities=13% Similarity=0.184 Sum_probs=21.6
Q ss_pred CCceEEEecCCchhhhHHHHHHH-h--cCCceEE
Q psy4724 75 KGHAMLITIGGSGAAEVTKLATF-M--NEYVLFE 105 (1650)
Q Consensus 75 ~G~alLvGvgGSGrqSLtrLAaf-i--~~~~~fq 105 (1650)
+-...|+|..||||.|++++-+- + .|+.+..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~ 38 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYT 38 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEE
Confidence 33677999999999999886543 3 2554443
No 233
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=43.32 E-value=10 Score=41.12 Aligned_cols=34 Identities=15% Similarity=-0.020 Sum_probs=24.6
Q ss_pred CCceEEEecCCchhhhHHHHHHHhcCCceEEEEE
Q psy4724 75 KGHAMLITIGGSGAAEVTKLATFMNEYVLFEIEI 108 (1650)
Q Consensus 75 ~G~alLvGvgGSGrqSLtrLAafi~~~~~fqIei 108 (1650)
+.-..|+|..||||.||.|+-+=+...+-=+|.+
T Consensus 35 Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~ 68 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIY 68 (214)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEE
Confidence 4467799999999999999866554444445544
No 234
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=43.28 E-value=11 Score=40.48 Aligned_cols=23 Identities=9% Similarity=-0.120 Sum_probs=18.9
Q ss_pred CceEEEecCCchhhhHHHHHHHh
Q psy4724 76 GHAMLITIGGSGAAEVTKLATFM 98 (1650)
Q Consensus 76 G~alLvGvgGSGrqSLtrLAafi 98 (1650)
....|+|..||||.||+++-+=.
T Consensus 7 ~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 7 FVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 35679999999999999876554
No 235
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=43.25 E-value=15 Score=46.27 Aligned_cols=34 Identities=15% Similarity=0.284 Sum_probs=25.0
Q ss_pred HHHHHHHHhcCCCCc----eEEEecCCchhhhHHHHHH
Q psy4724 63 HISRLCRILQQPKGH----AMLITIGGSGAAEVTKLAT 96 (1650)
Q Consensus 63 Hv~rI~Ril~~p~G~----alLvGvgGSGrqSLtrLAa 96 (1650)
+|+|+.|--..|+|| .+|.|..||||.|+++.-+
T Consensus 380 eVsr~lRe~~~~~gq~~~~I~l~GlsGSGKSTiA~~La 417 (573)
T 1m8p_A 380 EVVKILRESNPPRATQGFTIFLTGYMNSGKDAIARALQ 417 (573)
T ss_dssp HHHHHHHTTSCCTTTCCEEEEEECSTTSSHHHHHHHHH
T ss_pred cccHHHHHhcccccccceEEEeecCCCCCHHHHHHHHH
Confidence 466666665555554 6789999999999988544
No 236
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=43.21 E-value=14 Score=41.05 Aligned_cols=30 Identities=27% Similarity=0.378 Sum_probs=24.2
Q ss_pred CCceEEEecCCchhhhHHHHHHHhcCCceE
Q psy4724 75 KGHAMLITIGGSGAAEVTKLATFMNEYVLF 104 (1650)
Q Consensus 75 ~G~alLvGvgGSGrqSLtrLAafi~~~~~f 104 (1650)
+-+..|+|..||||.|++|+-+-..|+.++
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~~ 77 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGYTFF 77 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTCEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCcEE
Confidence 558999999999999999987766565433
No 237
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=42.79 E-value=14 Score=37.85 Aligned_cols=28 Identities=21% Similarity=0.192 Sum_probs=21.0
Q ss_pred ceEEEecCCchhhhHHHHHHHhcCCceE
Q psy4724 77 HAMLITIGGSGAAEVTKLATFMNEYVLF 104 (1650)
Q Consensus 77 ~alLvGvgGSGrqSLtrLAafi~~~~~f 104 (1650)
+..|.|..||||.|+++.-+--.++.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i 29 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFY 29 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 3679999999999998876554455443
No 238
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=42.79 E-value=19 Score=38.93 Aligned_cols=84 Identities=12% Similarity=0.062 Sum_probs=46.4
Q ss_pred EEEecCCchhhh-HHHHHHHh--cCCce--EEEEEcccCCcchh------------HHHHHHHHHHhccCCCCCEEEEEe
Q psy4724 79 MLITIGGSGAAE-VTKLATFM--NEYVL--FEIEILKTYGLTDW------------RDDLCRLMKKSGGKDAKPMTFLFS 141 (1650)
Q Consensus 79 lLvGvgGSGrqS-LtrLAafi--~~~~~--fqIeitk~Yg~~~f------------~eDLk~l~~~~g~~~~k~~vFl~t 141 (1650)
++.|.-||||.+ |.|++--. +++.+ |+..+...|+.... ..+...++.. +.++.-|+++.
T Consensus 32 vitG~M~sGKTT~Llr~~~r~~~~g~kvli~kp~~D~R~~~~~I~Sr~G~~~~a~~v~~~~di~~~---i~~~~dvV~ID 108 (219)
T 3e2i_A 32 CITGSMFSGKSEELIRRLRRGIYAKQKVVVFKPAIDDRYHKEKVVSHNGNAIEAINISKASEIMTH---DLTNVDVIGID 108 (219)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC-----------CBTTBCCEEEEESSGGGGGGS---CCTTCSEEEEC
T ss_pred EEECCCCCCHHHHHHHHHHHHHHcCCceEEEEeccCCcchhhhHHHhcCCceeeEEeCCHHHHHHH---HhcCCCEEEEe
Confidence 356888999999 76776332 35554 44444445653210 0111122221 23456688999
Q ss_pred cCCcCchhhHHHHHHHHhhhhhcc
Q psy4724 142 DTQIQNEVFVEHINMLLNTARKRY 165 (1650)
Q Consensus 142 D~qI~~E~fLedIN~lL~tge~~~ 165 (1650)
+.|.-++.+.+.++.+.+.|-|.+
T Consensus 109 EaQFf~~~~v~~l~~la~~gi~Vi 132 (219)
T 3e2i_A 109 EVQFFDDEIVSIVEKLSADGHRVI 132 (219)
T ss_dssp CGGGSCTHHHHHHHHHHHTTCEEE
T ss_pred chhcCCHHHHHHHHHHHHCCCEEE
Confidence 999998888888888876664433
No 239
>3c9i_A Tail needle protein GP26; xenon, coiled-coil, protein fiber, coiled coil, late protein, viral protein; 1.95A {Bacteriophage P22} PDB: 2poh_A
Probab=42.57 E-value=3.1e+02 Score=28.50 Aligned_cols=75 Identities=13% Similarity=0.143 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhccHHHHHHHHHHHH
Q psy4724 772 QMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKLERAEKLIGGLGGEKTRWSEASANLSKAL 846 (1650)
Q Consensus 772 ~~~~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~~Li~~L~~E~~rW~~~~~~~~~~~ 846 (1650)
++-+-.+..-.|.+-+.++.+++.+++....++..-+..+...+.|+-.++.=|.+|.....--...+...+..+
T Consensus 68 AQVrNDEQDViL~dHe~rI~a~~a~l~dHE~RIt~~~~~ia~~e~Rit~~e~~i~~l~~~v~~ld~~vt~~et~I 142 (242)
T 3c9i_A 68 AQVKNDEQDVELADHEARIKQLRIDVDDHESRITANTKAITALNVRVTTAEGEIASLQTNVSALDGRVTTAENNI 142 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCcccceeeecchhhhhhhhcccccHHHHhhhhhhhhhhhhheeecccccchhhhhhhhhhcccccccccch
Confidence 333333444456777888888888888888888888888888888888777777766554333333333333333
No 240
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=42.43 E-value=1.6e+02 Score=26.08 Aligned_cols=28 Identities=18% Similarity=0.134 Sum_probs=15.1
Q ss_pred HHHHHHhhhchhhccHHHHHHHHHHHHh
Q psy4724 820 RAEKLIGGLGGEKTRWSEASANLSKALV 847 (1650)
Q Consensus 820 ra~~Li~~L~~E~~rW~~~~~~~~~~~~ 847 (1650)
.-+.+|+-|..|...+...+..++.+..
T Consensus 43 KL~~mi~~l~~E~~~l~~ni~~lk~K~~ 70 (78)
T 3iv1_A 43 KLEEMVTRLDQEVAEVDKNIELLKKKDE 70 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555566666655555555443
No 241
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=42.30 E-value=26 Score=36.73 Aligned_cols=27 Identities=19% Similarity=0.151 Sum_probs=19.1
Q ss_pred eEEEecCCchhhhHHHHHHHhc---CCceE
Q psy4724 78 AMLITIGGSGAAEVTKLATFMN---EYVLF 104 (1650)
Q Consensus 78 alLvGvgGSGrqSLtrLAafi~---~~~~f 104 (1650)
..|.|..||||.|+++.-+-.. |+.+.
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~ 32 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVI 32 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-EE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 4689999999999987644333 55554
No 242
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=42.25 E-value=13 Score=39.80 Aligned_cols=25 Identities=12% Similarity=0.065 Sum_probs=19.1
Q ss_pred CCCC-ceEEEecCCchhhhHHHHHHH
Q psy4724 73 QPKG-HAMLITIGGSGAAEVTKLATF 97 (1650)
Q Consensus 73 ~p~G-~alLvGvgGSGrqSLtrLAaf 97 (1650)
+.+| -.+|+|+.||||.||++..+-
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHH
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHH
Confidence 3344 568999999999999886543
No 243
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=41.86 E-value=22 Score=37.85 Aligned_cols=23 Identities=9% Similarity=0.037 Sum_probs=18.0
Q ss_pred CCC-ceEEEecCCchhhhHHHHHH
Q psy4724 74 PKG-HAMLITIGGSGAAEVTKLAT 96 (1650)
Q Consensus 74 p~G-~alLvGvgGSGrqSLtrLAa 96 (1650)
++| -..|+|..||||.||++.-+
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~ 43 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLS 43 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 444 46789999999999988544
No 244
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=41.55 E-value=14 Score=42.38 Aligned_cols=26 Identities=19% Similarity=0.189 Sum_probs=19.7
Q ss_pred CCCceEEEecCCchhhhHHH-HHHHhc
Q psy4724 74 PKGHAMLITIGGSGAAEVTK-LATFMN 99 (1650)
Q Consensus 74 p~G~alLvGvgGSGrqSLtr-LAafi~ 99 (1650)
+++..+++|++||||.|+++ ||.+++
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~ 130 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISM 130 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34578899999999999765 555553
No 245
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=41.42 E-value=13 Score=38.68 Aligned_cols=28 Identities=7% Similarity=-0.160 Sum_probs=17.5
Q ss_pred ceEEEecCCchhhhHHHHHHHhcCCceE
Q psy4724 77 HAMLITIGGSGAAEVTKLATFMNEYVLF 104 (1650)
Q Consensus 77 ~alLvGvgGSGrqSLtrLAafi~~~~~f 104 (1650)
..+|.|..||||.|+++.-+--.++.++
T Consensus 7 ~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 7 IIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp EEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 5789999999999999976544455443
No 246
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=41.28 E-value=2.2e+02 Score=26.44 Aligned_cols=60 Identities=17% Similarity=0.251 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4724 759 KAKLAEAEADYAVQMEKLNSKRAQLATVLGKLQAL-----RDELAQKSKDKKELEDQIELCKQKL 818 (1650)
Q Consensus 759 ~~~l~~~e~~l~~~~~~L~~~~~~l~~~~~~l~~l-----~~~~~~~~~e~~~l~~~~~~~~~rl 818 (1650)
...+++++.++...+.+|...+++|++.++..+.- +..|..-..+...|+..+.+.+..|
T Consensus 34 M~~ieeLQ~Ei~~~E~QL~iArQKLkdAe~~~E~DPDevNK~tl~~R~~~Vsalq~KiaeLKrqL 98 (107)
T 2k48_A 34 MSTLQELQENITAHEQQLVTARQKLKDAEKAVEVDPDDVNKSTLQNRRAAVSTLETKLGELKRQL 98 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677777777777777777776666665432 3334444444444555554444444
No 247
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=41.20 E-value=2.2e+02 Score=26.33 Aligned_cols=46 Identities=20% Similarity=0.248 Sum_probs=20.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4724 756 GPKKAKLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDK 804 (1650)
Q Consensus 756 ~P~~~~l~~~e~~l~~~~~~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~ 804 (1650)
..+...+.+++..+....+. .+..+..+++.++.++.+.+...++.
T Consensus 22 ~~LE~~l~e~E~~~~~e~~~---~q~~i~~lE~eL~~~r~e~~~ql~EY 67 (95)
T 3mov_A 22 RACLERIQELEDLLAKEKDN---SRRMLTDKEREMAEIRDQMQQQLNDY 67 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666655443332 23334444444444444444433333
No 248
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=41.10 E-value=4.9e+02 Score=30.57 Aligned_cols=85 Identities=14% Similarity=0.141 Sum_probs=42.2
Q ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHH
Q psy4724 747 VYDRVIKIVGPKKAKLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCK------QKLER 820 (1650)
Q Consensus 747 ~Y~~v~~~v~P~~~~l~~~e~~l~~~~~~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~------~rl~r 820 (1650)
.|+++.+.+.-.+.++..++..+...+..+.....+.+..+..+..++++..........+...+.+-+ ..+.-
T Consensus 350 e~~~lrQRlddArNEItsaeSaInslqaqvSa~t~e~k~A~d~l~a~~kek~~~~n~~a~~~~KiAE~KrK~dE~~aIKD 429 (602)
T 1cii_A 350 EWDKLRQRLLDARNKITSAESAVNSARNNLSARTNEQKHANDALNALLKEKENIRNQLSGINQKIAEEKRKQDELKATKD 429 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhhhHHHHHHH
Confidence 344555555555666666666666555555555555555555555555554444322222222222222 22445
Q ss_pred HHHHHhhhchh
Q psy4724 821 AEKLIGGLGGE 831 (1650)
Q Consensus 821 a~~Li~~L~~E 831 (1650)
|-+++.+...+
T Consensus 430 AVkfTAdFykk 440 (602)
T 1cii_A 430 AINFTTEFLKS 440 (602)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55566655544
No 249
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=41.05 E-value=1.8e+02 Score=25.37 Aligned_cols=59 Identities=15% Similarity=0.198 Sum_probs=30.8
Q ss_pred HhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4724 753 KIVGPKKAKLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQI 811 (1650)
Q Consensus 753 ~~v~P~~~~l~~~e~~l~~~~~~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~ 811 (1650)
..+++...+=..++..+...+..|+..+.+-......+..+...++-.+.+...+...+
T Consensus 7 ~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL~elrq~L 65 (72)
T 3cve_A 7 MKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFELTELRDNL 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 33444444444455555555555555555555555555555555555555555554444
No 250
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=41.04 E-value=11 Score=41.65 Aligned_cols=26 Identities=15% Similarity=0.212 Sum_probs=20.8
Q ss_pred CCCC-ceEEEecCCchhhhHHHHHHHh
Q psy4724 73 QPKG-HAMLITIGGSGAAEVTKLATFM 98 (1650)
Q Consensus 73 ~p~G-~alLvGvgGSGrqSLtrLAafi 98 (1650)
.+.| ...|+|..||||.||.|+-+=+
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 28 IPEGALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTC
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3455 6779999999999999986544
No 251
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=41.02 E-value=1.4e+02 Score=24.76 Aligned_cols=47 Identities=4% Similarity=0.081 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4724 770 AVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQ 816 (1650)
Q Consensus 770 ~~~~~~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~ 816 (1650)
...+..+......+......+..++.+++......+....++..++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~ 54 (60)
T 3htk_A 8 KTLENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKN 54 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444445555555555555555555555544444433
No 252
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=41.02 E-value=14 Score=38.57 Aligned_cols=21 Identities=19% Similarity=0.294 Sum_probs=17.4
Q ss_pred ceEEEecCCchhhhHHHHHHH
Q psy4724 77 HAMLITIGGSGAAEVTKLATF 97 (1650)
Q Consensus 77 ~alLvGvgGSGrqSLtrLAaf 97 (1650)
..+|+|+.||||.|+++.-+-
T Consensus 5 ~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 5 VVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999876443
No 253
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=40.96 E-value=11 Score=41.94 Aligned_cols=37 Identities=22% Similarity=0.109 Sum_probs=26.3
Q ss_pred CCCC-ceEEEecCCchhhhHHHHHHHhcCCceEEEEEc
Q psy4724 73 QPKG-HAMLITIGGSGAAEVTKLATFMNEYVLFEIEIL 109 (1650)
Q Consensus 73 ~p~G-~alLvGvgGSGrqSLtrLAafi~~~~~fqIeit 109 (1650)
.+.| ...|+|..||||.||.|+.+=+...+-=+|.+.
T Consensus 32 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~ 69 (247)
T 2ff7_A 32 IKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLID 69 (247)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEET
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEC
Confidence 3444 667999999999999999766544444455543
No 254
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=40.91 E-value=17 Score=37.98 Aligned_cols=27 Identities=22% Similarity=0.267 Sum_probs=20.6
Q ss_pred ceEEEecCCchhhhHHHHHHHhcCCce
Q psy4724 77 HAMLITIGGSGAAEVTKLATFMNEYVL 103 (1650)
Q Consensus 77 ~alLvGvgGSGrqSLtrLAafi~~~~~ 103 (1650)
..+|+|..||||.|+++.-+--.|+.+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~ 30 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALGVGL 30 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHTCCE
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCE
Confidence 478999999999999986544335543
No 255
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=40.83 E-value=14 Score=39.77 Aligned_cols=24 Identities=21% Similarity=0.232 Sum_probs=18.7
Q ss_pred CCC-ceEEEecCCchhhhHHHHHHH
Q psy4724 74 PKG-HAMLITIGGSGAAEVTKLATF 97 (1650)
Q Consensus 74 p~G-~alLvGvgGSGrqSLtrLAaf 97 (1650)
++| -..|+|+.||||.||.++-+-
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~ 30 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFK 30 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHh
Confidence 445 467899999999999886543
No 256
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=40.72 E-value=14 Score=38.27 Aligned_cols=21 Identities=10% Similarity=0.335 Sum_probs=18.4
Q ss_pred CCCCceEEEecCCchhhhHHH
Q psy4724 73 QPKGHAMLITIGGSGAAEVTK 93 (1650)
Q Consensus 73 ~p~G~alLvGvgGSGrqSLtr 93 (1650)
.+.-+.+++|..|+||.||..
T Consensus 16 ~~~~~i~v~G~~~~GKssli~ 36 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILY 36 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHH
Confidence 567799999999999999963
No 257
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=40.69 E-value=14 Score=39.28 Aligned_cols=23 Identities=22% Similarity=0.239 Sum_probs=19.3
Q ss_pred ceEEEecCCchhhhHHHHHHHhc
Q psy4724 77 HAMLITIGGSGAAEVTKLATFMN 99 (1650)
Q Consensus 77 ~alLvGvgGSGrqSLtrLAafi~ 99 (1650)
...|+|+.||||.||.++.+-..
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 57899999999999988776653
No 258
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=40.52 E-value=1.7e+02 Score=35.38 Aligned_cols=62 Identities=24% Similarity=0.230 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Q psy4724 762 LAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKS----KDKKELEDQIELCKQKLERAEK 823 (1650)
Q Consensus 762 l~~~e~~l~~~~~~L~~~~~~l~~~~~~l~~l~~~~~~~~----~e~~~l~~~~~~~~~rl~ra~~ 823 (1650)
-..++++|.++++.+...+.+-....-.+-.|++.++..+ ++.++|+.++...+.+|+.++.
T Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (471)
T 3mq9_A 399 THLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASA 464 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444433322 3345555555555555554443
No 259
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=40.49 E-value=32 Score=38.18 Aligned_cols=22 Identities=14% Similarity=0.231 Sum_probs=18.3
Q ss_pred ceEEEecCCchhhhHHHHHHHh
Q psy4724 77 HAMLITIGGSGAAEVTKLATFM 98 (1650)
Q Consensus 77 ~alLvGvgGSGrqSLtrLAafi 98 (1650)
..+|+|..||||.|+++.-+-.
T Consensus 34 ~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 34 AILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp EEEEESCGGGTTHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 5789999999999998865543
No 260
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=40.28 E-value=13 Score=41.36 Aligned_cols=27 Identities=26% Similarity=0.334 Sum_probs=21.1
Q ss_pred cCCCC-ceEEEecCCchhhhHHHHHHHh
Q psy4724 72 QQPKG-HAMLITIGGSGAAEVTKLATFM 98 (1650)
Q Consensus 72 ~~p~G-~alLvGvgGSGrqSLtrLAafi 98 (1650)
.-+.| ...|+|..||||.||.|+-+=+
T Consensus 25 ~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 25 VVPKGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34455 6679999999999999986643
No 261
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=40.16 E-value=17 Score=45.44 Aligned_cols=36 Identities=8% Similarity=0.194 Sum_probs=25.8
Q ss_pred HHHHHHHHHhcC---CCC-ceEEEecCCchhhhHHHHHHH
Q psy4724 62 QHISRLCRILQQ---PKG-HAMLITIGGSGAAEVTKLATF 97 (1650)
Q Consensus 62 ~Hv~rI~Ril~~---p~G-~alLvGvgGSGrqSLtrLAaf 97 (1650)
.+|.++.|--.. ++| ...|+|..||||.||.|+-+-
T Consensus 352 peV~~vLR~~~~~~~~~G~iI~LiG~sGSGKSTLar~La~ 391 (552)
T 3cr8_A 352 PEVLAELHRQTPPRERQGFTVFFTGLSGAGKSTLARALAA 391 (552)
T ss_dssp HHHHHHHHHHSCCGGGSCEEEEEEESSCHHHHHHHHHHHH
T ss_pred cchhhhhhhhcccccccceEEEEECCCCChHHHHHHHHHH
Confidence 356666665432 244 778999999999999887553
No 262
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=40.16 E-value=1.6e+02 Score=25.55 Aligned_cols=43 Identities=12% Similarity=0.285 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4724 777 NSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKLE 819 (1650)
Q Consensus 777 ~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ 819 (1650)
..++..+.+++.++..|+...+.+..+.+.|..++..+...+.
T Consensus 25 eRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~ 67 (70)
T 1gd2_E 25 KRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELR 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5577788999999999999888888888888888887776654
No 263
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=39.73 E-value=80 Score=25.05 Aligned_cols=12 Identities=8% Similarity=0.047 Sum_probs=4.4
Q ss_pred HHHHHHHHHHHH
Q psy4724 805 KELEDQIELCKQ 816 (1650)
Q Consensus 805 ~~l~~~~~~~~~ 816 (1650)
.+|-.+++..+.
T Consensus 22 ArLlae~~ssq~ 33 (46)
T 3swy_A 22 ARLLAEYNATQM 33 (46)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 264
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=39.49 E-value=13 Score=39.04 Aligned_cols=21 Identities=14% Similarity=0.124 Sum_probs=17.4
Q ss_pred eEEEecCCchhhhHHHHHHHh
Q psy4724 78 AMLITIGGSGAAEVTKLATFM 98 (1650)
Q Consensus 78 alLvGvgGSGrqSLtrLAafi 98 (1650)
..|+|+.||||.||.++.+=.
T Consensus 4 i~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 458999999999998876644
No 265
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=39.25 E-value=12 Score=41.71 Aligned_cols=28 Identities=18% Similarity=0.252 Sum_probs=21.7
Q ss_pred cCCCC-ceEEEecCCchhhhHHHHHHHhc
Q psy4724 72 QQPKG-HAMLITIGGSGAAEVTKLATFMN 99 (1650)
Q Consensus 72 ~~p~G-~alLvGvgGSGrqSLtrLAafi~ 99 (1650)
..+.| ...|+|..||||.||.|+-+=+.
T Consensus 27 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 27 DLNKGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EEETTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34455 66799999999999999866554
No 266
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=38.96 E-value=1.3e+02 Score=27.47 Aligned_cols=19 Identities=26% Similarity=0.335 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy4724 779 KRAQLATVLGKLQALRDEL 797 (1650)
Q Consensus 779 ~~~~l~~~~~~l~~l~~~~ 797 (1650)
....|..++++++.|+.++
T Consensus 27 le~~Ie~LE~~i~~le~~l 45 (89)
T 2lw1_A 27 LPQLLEDLEAKLEALQTQV 45 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444433
No 267
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=38.88 E-value=17 Score=37.85 Aligned_cols=30 Identities=20% Similarity=0.395 Sum_probs=24.8
Q ss_pred hcCCCCceEEEecCCchhhhHHHHHHHhcC
Q psy4724 71 LQQPKGHAMLITIGGSGAAEVTKLATFMNE 100 (1650)
Q Consensus 71 l~~p~G~alLvGvgGSGrqSLtrLAafi~~ 100 (1650)
+....|-.+++|..||||.||.+.-+++.+
T Consensus 22 ~~~~~g~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 22 IPFSKGFTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EECCSSEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred EecCCCcEEEECCCCCCHHHHHHHHHHHHc
Confidence 344567778999999999999999888754
No 268
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=38.88 E-value=14 Score=38.67 Aligned_cols=21 Identities=19% Similarity=0.338 Sum_probs=16.9
Q ss_pred eEEEecCCchhhhHHHH-HHHh
Q psy4724 78 AMLITIGGSGAAEVTKL-ATFM 98 (1650)
Q Consensus 78 alLvGvgGSGrqSLtrL-Aafi 98 (1650)
.+|+|+.||||.|+++. |..+
T Consensus 4 I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 4 GIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 67999999999999864 4444
No 269
>4ehx_A Tetraacyldisaccharide 4'-kinase; membrane protein, lipid A, P-loop, P-loop containing nucleoside triphosphate hydrolase; HET: EPE; 1.90A {Aquifex aeolicus} PDB: 4ehy_A* 4ehw_A
Probab=38.82 E-value=22 Score=40.98 Aligned_cols=37 Identities=19% Similarity=0.365 Sum_probs=29.5
Q ss_pred ceEEEe---cCCchhhhHH-HHHHHhcCCceEEEEEcccCCcc
Q psy4724 77 HAMLIT---IGGSGAAEVT-KLATFMNEYVLFEIEILKTYGLT 115 (1650)
Q Consensus 77 ~alLvG---vgGSGrqSLt-rLAafi~~~~~fqIeitk~Yg~~ 115 (1650)
-.+-|| |||+||.-++ .||.++.++.+ --++|+||-.
T Consensus 37 PVI~VGNitvGGTGKTP~vi~L~~~L~~~~~--~ilsRGYg~~ 77 (315)
T 4ehx_A 37 PVISVGNLSVGGSGKTSFVMYLADLLKDKRV--CILSRGYKRK 77 (315)
T ss_dssp CEEEEEESBSSCCSHHHHHHHHHHHTTTSCE--EEEECCCSCS
T ss_pred CEEEECCEEeCCCChHHHHHHHHHHHhhcCc--eEEeeccccc
Confidence 367888 9999999985 58888888775 3589999854
No 270
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=38.80 E-value=13 Score=41.02 Aligned_cols=21 Identities=24% Similarity=0.286 Sum_probs=18.4
Q ss_pred CceEEEecCCchhhhHHHHHH
Q psy4724 76 GHAMLITIGGSGAAEVTKLAT 96 (1650)
Q Consensus 76 G~alLvGvgGSGrqSLtrLAa 96 (1650)
-...|+|..||||.||.|+-+
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 478899999999999998755
No 271
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=38.56 E-value=14 Score=40.85 Aligned_cols=33 Identities=15% Similarity=0.120 Sum_probs=25.3
Q ss_pred CceEEEecCCchhhhHHHHHHHhcCCceEEEEE
Q psy4724 76 GHAMLITIGGSGAAEVTKLATFMNEYVLFEIEI 108 (1650)
Q Consensus 76 G~alLvGvgGSGrqSLtrLAafi~~~~~fqIei 108 (1650)
....|+|..||||.||.|+-+=+...+-=+|.+
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~ 57 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRL 57 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence 677799999999999999977665444445544
No 272
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=38.46 E-value=16 Score=38.61 Aligned_cols=25 Identities=12% Similarity=0.191 Sum_probs=19.4
Q ss_pred ceEEEecCCchhhhHHHHHHHhcCC
Q psy4724 77 HAMLITIGGSGAAEVTKLATFMNEY 101 (1650)
Q Consensus 77 ~alLvGvgGSGrqSLtrLAafi~~~ 101 (1650)
...|+|..||||.|++++-+--.++
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~ 26 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGY 26 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCC
T ss_pred EEEEECCCccCHHHHHHHHHHhcCC
Confidence 3579999999999998865544454
No 273
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=38.41 E-value=15 Score=41.46 Aligned_cols=27 Identities=15% Similarity=0.161 Sum_probs=21.5
Q ss_pred cCCCC-ceEEEecCCchhhhHHHHHHHh
Q psy4724 72 QQPKG-HAMLITIGGSGAAEVTKLATFM 98 (1650)
Q Consensus 72 ~~p~G-~alLvGvgGSGrqSLtrLAafi 98 (1650)
..+.| -..|+|..||||.||.|+-+=+
T Consensus 42 ~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 42 DVHPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EECTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 44556 5669999999999999986654
No 274
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=38.31 E-value=2.3e+02 Score=25.68 Aligned_cols=59 Identities=12% Similarity=0.199 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4724 765 AEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKLERAEK 823 (1650)
Q Consensus 765 ~e~~l~~~~~~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~~ 823 (1650)
+..++..+...-.....++..+...++.++..|+.-....+.++.++.....-++.|.-
T Consensus 5 Lr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l 63 (86)
T 3swk_A 5 LRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASL 63 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 34444444444455555666666777777777777777777777776666555544443
No 275
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=38.21 E-value=1.6e+02 Score=26.66 Aligned_cols=51 Identities=24% Similarity=0.317 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4724 768 DYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKL 818 (1650)
Q Consensus 768 ~l~~~~~~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl 818 (1650)
.....+.++......-..++..+..|+...+++.--+-.|+.+++.++.-+
T Consensus 29 ~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl 79 (86)
T 3swk_A 29 DIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEI 79 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444455666677777777777777777777666655443
No 276
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=38.19 E-value=13 Score=41.15 Aligned_cols=38 Identities=18% Similarity=0.158 Sum_probs=27.1
Q ss_pred cCCCC-ceEEEecCCchhhhHHHHHHHhcCCceEEEEEc
Q psy4724 72 QQPKG-HAMLITIGGSGAAEVTKLATFMNEYVLFEIEIL 109 (1650)
Q Consensus 72 ~~p~G-~alLvGvgGSGrqSLtrLAafi~~~~~fqIeit 109 (1650)
.-+.| ...|+|..||||.||.|+-+=+..-+-=+|.+.
T Consensus 28 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~ 66 (240)
T 1ji0_A 28 KVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFN 66 (240)
T ss_dssp EEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEET
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEC
Confidence 44555 566999999999999998765544444555553
No 277
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=38.18 E-value=12 Score=41.52 Aligned_cols=28 Identities=11% Similarity=0.124 Sum_probs=21.9
Q ss_pred cCCCC-ceEEEecCCchhhhHHHHHHHhc
Q psy4724 72 QQPKG-HAMLITIGGSGAAEVTKLATFMN 99 (1650)
Q Consensus 72 ~~p~G-~alLvGvgGSGrqSLtrLAafi~ 99 (1650)
..+.| ...|+|..||||.||.|+-+=+.
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 24 EAQPNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EECTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44555 67799999999999999865443
No 278
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=38.12 E-value=13 Score=41.64 Aligned_cols=38 Identities=18% Similarity=0.129 Sum_probs=27.0
Q ss_pred cCCCC-ceEEEecCCchhhhHHHHHHHhcCCceEEEEEc
Q psy4724 72 QQPKG-HAMLITIGGSGAAEVTKLATFMNEYVLFEIEIL 109 (1650)
Q Consensus 72 ~~p~G-~alLvGvgGSGrqSLtrLAafi~~~~~fqIeit 109 (1650)
..+.| ...|+|..||||.||.|+-+=+...+-=+|.+.
T Consensus 29 ~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~ 67 (257)
T 1g6h_A 29 SVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFE 67 (257)
T ss_dssp EEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEET
T ss_pred EEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEC
Confidence 34555 566999999999999998766554444455543
No 279
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=38.08 E-value=13 Score=41.90 Aligned_cols=37 Identities=19% Similarity=0.161 Sum_probs=25.7
Q ss_pred cCCCC-ceEEEecCCchhhhHHHHHHHhcCCceEEEEE
Q psy4724 72 QQPKG-HAMLITIGGSGAAEVTKLATFMNEYVLFEIEI 108 (1650)
Q Consensus 72 ~~p~G-~alLvGvgGSGrqSLtrLAafi~~~~~fqIei 108 (1650)
.-+.| ..-|||..||||.||.|+.+=+..-+-=+|.+
T Consensus 33 ~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~ 70 (266)
T 4g1u_C 33 HIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHL 70 (266)
T ss_dssp EEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEE
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEE
Confidence 34455 56699999999999999877654433334444
No 280
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=38.02 E-value=24 Score=42.01 Aligned_cols=38 Identities=11% Similarity=0.145 Sum_probs=27.3
Q ss_pred CCCceEEEecCCchhhhHHHHHHHh---cCCceEEEEEccc
Q psy4724 74 PKGHAMLITIGGSGAAEVTKLATFM---NEYVLFEIEILKT 111 (1650)
Q Consensus 74 p~G~alLvGvgGSGrqSLtrLAafi---~~~~~fqIeitk~ 111 (1650)
..+|++++|..||||.+|.+.-+.. .|..++-+.....
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~~~~ 74 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDPERE 74 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEESSCC
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeCCcC
Confidence 6899999999999999998754432 3555655554433
No 281
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=38.01 E-value=18 Score=39.09 Aligned_cols=25 Identities=12% Similarity=0.109 Sum_probs=20.4
Q ss_pred ceEEEecCCchhhhHHHHHHHhcCC
Q psy4724 77 HAMLITIGGSGAAEVTKLATFMNEY 101 (1650)
Q Consensus 77 ~alLvGvgGSGrqSLtrLAafi~~~ 101 (1650)
...|+|..||||.|++++-+-..|+
T Consensus 7 ~i~i~G~~GsGKSTl~~~L~~~~g~ 31 (227)
T 1cke_A 7 VITIDGPSGAGKGTLCKAMAEALQW 31 (227)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5789999999999999977654453
No 282
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=37.90 E-value=20 Score=37.61 Aligned_cols=26 Identities=15% Similarity=0.125 Sum_probs=20.2
Q ss_pred ceEEEecCCchhhhHHHHHHHhcCCc
Q psy4724 77 HAMLITIGGSGAAEVTKLATFMNEYV 102 (1650)
Q Consensus 77 ~alLvGvgGSGrqSLtrLAafi~~~~ 102 (1650)
...|+|..||||.|++++-+--.++.
T Consensus 11 ~I~l~G~~GsGKsT~~~~La~~l~~~ 36 (196)
T 2c95_A 11 IIFVVGGPGSGKGTQCEKIVQKYGYT 36 (196)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHCCE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 68899999999999987765433543
No 283
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=37.89 E-value=20 Score=37.49 Aligned_cols=25 Identities=12% Similarity=0.007 Sum_probs=19.0
Q ss_pred ceEEEecCCchhhhHHHHHHHhcCC
Q psy4724 77 HAMLITIGGSGAAEVTKLATFMNEY 101 (1650)
Q Consensus 77 ~alLvGvgGSGrqSLtrLAafi~~~ 101 (1650)
...|+|..||||.|+++.-+--.|+
T Consensus 8 ~I~l~G~~GsGKsT~~~~L~~~l~~ 32 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQCANIVRDFGW 32 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4689999999999998765433344
No 284
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=37.88 E-value=18 Score=39.73 Aligned_cols=26 Identities=12% Similarity=-0.017 Sum_probs=20.7
Q ss_pred ceEEEecCCchhhhHHHHHHHhcCCc
Q psy4724 77 HAMLITIGGSGAAEVTKLATFMNEYV 102 (1650)
Q Consensus 77 ~alLvGvgGSGrqSLtrLAafi~~~~ 102 (1650)
...++|..||||.|+++.-+--.|+.
T Consensus 11 ~i~i~G~~GsGKsTla~~la~~lg~~ 36 (233)
T 3r20_A 11 VVAVDGPAGTGKSSVSRGLARALGAR 36 (233)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 68899999999999998766444543
No 285
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=37.88 E-value=18 Score=38.41 Aligned_cols=24 Identities=17% Similarity=0.018 Sum_probs=18.9
Q ss_pred ceEEEecCCchhhhHHHHHHHhcCC
Q psy4724 77 HAMLITIGGSGAAEVTKLATFMNEY 101 (1650)
Q Consensus 77 ~alLvGvgGSGrqSLtrLAafi~~~ 101 (1650)
...|+|..||||.|++++-+- .|+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~ 26 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGA 26 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTC
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCC
Confidence 357999999999999987655 343
No 286
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=37.87 E-value=19 Score=38.65 Aligned_cols=27 Identities=11% Similarity=0.079 Sum_probs=19.2
Q ss_pred ceEEEecCCchhhhHHHHHHHhcCCce
Q psy4724 77 HAMLITIGGSGAAEVTKLATFMNEYVL 103 (1650)
Q Consensus 77 ~alLvGvgGSGrqSLtrLAafi~~~~~ 103 (1650)
+.+|+|..||||.|+++.-+--.|+.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~ 28 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPH 28 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcE
Confidence 367999999999999885432224443
No 287
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=37.86 E-value=16 Score=39.25 Aligned_cols=28 Identities=14% Similarity=0.092 Sum_probs=20.3
Q ss_pred cCCCCc-eEEEecCCchhhhHHHHHHHhc
Q psy4724 72 QQPKGH-AMLITIGGSGAAEVTKLATFMN 99 (1650)
Q Consensus 72 ~~p~G~-alLvGvgGSGrqSLtrLAafi~ 99 (1650)
.-+.|. ..|+|..||||.||.|+-+=+.
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 445664 5599999999999999776554
No 288
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=37.83 E-value=13 Score=40.72 Aligned_cols=37 Identities=14% Similarity=0.023 Sum_probs=25.4
Q ss_pred cCCCC-ceEEEecCCchhhhHHHHHHHhcCCceEEEEE
Q psy4724 72 QQPKG-HAMLITIGGSGAAEVTKLATFMNEYVLFEIEI 108 (1650)
Q Consensus 72 ~~p~G-~alLvGvgGSGrqSLtrLAafi~~~~~fqIei 108 (1650)
.-+.| ...|+|..||||.||.|+-+=+...+-=+|.+
T Consensus 30 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~ 67 (229)
T 2pze_A 30 KIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKH 67 (229)
T ss_dssp EEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEE
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEE
Confidence 33445 66799999999999999876554333344443
No 289
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=37.74 E-value=13 Score=41.70 Aligned_cols=37 Identities=22% Similarity=0.252 Sum_probs=26.5
Q ss_pred cCCCC-ceEEEecCCchhhhHHHHHHHhcCCceEEEEE
Q psy4724 72 QQPKG-HAMLITIGGSGAAEVTKLATFMNEYVLFEIEI 108 (1650)
Q Consensus 72 ~~p~G-~alLvGvgGSGrqSLtrLAafi~~~~~fqIei 108 (1650)
.-+.| -..|+|..||||.||.|+-+=+...+-=+|.+
T Consensus 28 ~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~ 65 (262)
T 1b0u_A 28 QARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIV 65 (262)
T ss_dssp EECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEE
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEE
Confidence 44566 56699999999999999876554444445544
No 290
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=37.67 E-value=21 Score=38.64 Aligned_cols=27 Identities=15% Similarity=-0.023 Sum_probs=19.9
Q ss_pred CceEEEecCCchhhhHHHHHHHhcCCc
Q psy4724 76 GHAMLITIGGSGAAEVTKLATFMNEYV 102 (1650)
Q Consensus 76 G~alLvGvgGSGrqSLtrLAafi~~~~ 102 (1650)
=..+|+|..||||.|+++.-+--.++.
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~l~~~ 31 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQERFHAA 31 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCCE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCce
Confidence 367899999999999987544333543
No 291
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=37.58 E-value=13 Score=41.61 Aligned_cols=27 Identities=30% Similarity=0.423 Sum_probs=21.5
Q ss_pred cCCCC-ceEEEecCCchhhhHHHHHHHh
Q psy4724 72 QQPKG-HAMLITIGGSGAAEVTKLATFM 98 (1650)
Q Consensus 72 ~~p~G-~alLvGvgGSGrqSLtrLAafi 98 (1650)
.-+.| ...|+|..||||.||.|+-+=+
T Consensus 42 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 42 FIPSGTTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp EECTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 44555 6679999999999999986544
No 292
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=37.56 E-value=34 Score=37.70 Aligned_cols=20 Identities=15% Similarity=0.192 Sum_probs=17.4
Q ss_pred ceEEEecCCchhhhHHHHHH
Q psy4724 77 HAMLITIGGSGAAEVTKLAT 96 (1650)
Q Consensus 77 ~alLvGvgGSGrqSLtrLAa 96 (1650)
..+|.|..||||.|+++.-+
T Consensus 31 ~I~l~G~~GsGKsT~a~~L~ 50 (243)
T 3tlx_A 31 RYIFLGAPGSGKGTQSLNLK 50 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68899999999999987654
No 293
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=37.42 E-value=19 Score=40.03 Aligned_cols=37 Identities=16% Similarity=0.109 Sum_probs=26.7
Q ss_pred cCCCC-ceEEEecCCchhhhHHHHHHHhcCCceEEEEEc
Q psy4724 72 QQPKG-HAMLITIGGSGAAEVTKLATFMNEYVLFEIEIL 109 (1650)
Q Consensus 72 ~~p~G-~alLvGvgGSGrqSLtrLAafi~~~~~fqIeit 109 (1650)
..+.| ...|+|..||||.||.|+-+=+...+ =+|.+.
T Consensus 22 ~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~ 59 (249)
T 2qi9_C 22 EVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFA 59 (249)
T ss_dssp EEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEET
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEEC
Confidence 34455 66799999999999999866554444 566553
No 294
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=37.39 E-value=36 Score=35.48 Aligned_cols=29 Identities=21% Similarity=0.306 Sum_probs=20.8
Q ss_pred eEEEecCCchhhhHHHHH-HHh--cCCceEEE
Q psy4724 78 AMLITIGGSGAAEVTKLA-TFM--NEYVLFEI 106 (1650)
Q Consensus 78 alLvGvgGSGrqSLtrLA-afi--~~~~~fqI 106 (1650)
..|.|..||||.|+++.- ..+ .|+.++..
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~ 34 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLY 34 (195)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 578999999999998754 444 26655543
No 295
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=37.25 E-value=16 Score=40.25 Aligned_cols=24 Identities=21% Similarity=0.317 Sum_probs=20.0
Q ss_pred CCCC-ceEEEecCCchhhhHHHHHH
Q psy4724 73 QPKG-HAMLITIGGSGAAEVTKLAT 96 (1650)
Q Consensus 73 ~p~G-~alLvGvgGSGrqSLtrLAa 96 (1650)
.|.| -..|+|..||||.||.+.-+
T Consensus 27 i~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 27 FPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 4445 67899999999999999766
No 296
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=37.20 E-value=2.4e+02 Score=25.91 Aligned_cols=51 Identities=10% Similarity=0.233 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchh
Q psy4724 781 AQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKLERAEKLIGGLGGE 831 (1650)
Q Consensus 781 ~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~~Li~~L~~E 831 (1650)
..+.-++.++..++..|..--+..+++..+.+.....+....+=++.|..|
T Consensus 40 E~i~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~~ql~~lq~q~~~L~~~ 90 (94)
T 3jsv_C 40 ETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFNKLKVG 90 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHTTC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Confidence 444556667777777777777777888888888877777766655555443
No 297
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=37.20 E-value=23 Score=40.42 Aligned_cols=22 Identities=14% Similarity=0.111 Sum_probs=17.1
Q ss_pred ceEEEecCCchhhhHHHH-HHHh
Q psy4724 77 HAMLITIGGSGAAEVTKL-ATFM 98 (1650)
Q Consensus 77 ~alLvGvgGSGrqSLtrL-Aafi 98 (1650)
-..++|..||||.||+++ +.++
T Consensus 33 ii~I~G~sGsGKSTla~~L~~~l 55 (290)
T 1odf_A 33 FIFFSGPQGSGKSFTSIQIYNHL 55 (290)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 456889999999999974 4444
No 298
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=37.13 E-value=14 Score=42.02 Aligned_cols=37 Identities=14% Similarity=0.254 Sum_probs=26.7
Q ss_pred CCCC-ceEEEecCCchhhhHHHHHHHhcCCceEEEEEc
Q psy4724 73 QPKG-HAMLITIGGSGAAEVTKLATFMNEYVLFEIEIL 109 (1650)
Q Consensus 73 ~p~G-~alLvGvgGSGrqSLtrLAafi~~~~~fqIeit 109 (1650)
.+.| ...|+|..||||.||.|+-+=+...+-=+|.+.
T Consensus 44 i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~ 81 (279)
T 2ihy_A 44 IAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLF 81 (279)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEET
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEEC
Confidence 4455 667999999999999998765544444555553
No 299
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=37.13 E-value=14 Score=41.68 Aligned_cols=39 Identities=15% Similarity=0.101 Sum_probs=27.1
Q ss_pred hcCCCC-ceEEEecCCchhhhHHHHHHHhcCCceEEEEEc
Q psy4724 71 LQQPKG-HAMLITIGGSGAAEVTKLATFMNEYVLFEIEIL 109 (1650)
Q Consensus 71 l~~p~G-~alLvGvgGSGrqSLtrLAafi~~~~~fqIeit 109 (1650)
+..+.| ...|+|..||||.||.|+-+=+...+-=+|.+.
T Consensus 28 l~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~ 67 (266)
T 2yz2_A 28 LVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYD 67 (266)
T ss_dssp EEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEET
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEC
Confidence 345556 566999999999999998665544444455543
No 300
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=37.09 E-value=13 Score=44.05 Aligned_cols=24 Identities=21% Similarity=0.364 Sum_probs=20.1
Q ss_pred ceEEEecCCchhhhHHHHHHHhcC
Q psy4724 77 HAMLITIGGSGAAEVTKLATFMNE 100 (1650)
Q Consensus 77 ~alLvGvgGSGrqSLtrLAafi~~ 100 (1650)
..||+|.|||||.|+.|-...+.+
T Consensus 35 killlG~~~SGKST~~kq~~i~~~ 58 (362)
T 1zcb_A 35 KILLLGAGESGKSTFLKQMRIIHG 58 (362)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHHHhC
Confidence 579999999999999988765543
No 301
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=37.04 E-value=22 Score=42.60 Aligned_cols=28 Identities=11% Similarity=0.016 Sum_probs=23.0
Q ss_pred HhcCCCCceEEEecCCchhhhHHHHHHH
Q psy4724 70 ILQQPKGHAMLITIGGSGAAEVTKLATF 97 (1650)
Q Consensus 70 il~~p~G~alLvGvgGSGrqSLtrLAaf 97 (1650)
.+...+|...|||..||||.||.+.-+=
T Consensus 64 ~~~~~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 64 EIDSSVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp HHHHCCEEEEEEECTTSSHHHHHHHHHT
T ss_pred hcccCCeEEEEECCCCCcHHHHHHHHhC
Confidence 3345678999999999999999997654
No 302
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=36.93 E-value=15 Score=44.97 Aligned_cols=25 Identities=8% Similarity=0.127 Sum_probs=19.3
Q ss_pred CCC-ceEEEecCCchhhhHHHHHHHh
Q psy4724 74 PKG-HAMLITIGGSGAAEVTKLATFM 98 (1650)
Q Consensus 74 p~G-~alLvGvgGSGrqSLtrLAafi 98 (1650)
++| -.+|||++||||.||.+.-+.+
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAgl 316 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLARQ 316 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHH
Confidence 345 6779999999999987765544
No 303
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=36.87 E-value=19 Score=37.86 Aligned_cols=26 Identities=15% Similarity=0.093 Sum_probs=19.6
Q ss_pred ceEEEecCCchhhhHHHHHHHhcCCc
Q psy4724 77 HAMLITIGGSGAAEVTKLATFMNEYV 102 (1650)
Q Consensus 77 ~alLvGvgGSGrqSLtrLAafi~~~~ 102 (1650)
...|+|..||||.|+++.-+--.++.
T Consensus 14 ~I~l~G~~GsGKsT~a~~L~~~l~~~ 39 (199)
T 2bwj_A 14 IIFIIGGPGSGKGTQCEKLVEKYGFT 39 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTCE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 57899999999999987654433543
No 304
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=36.48 E-value=14 Score=41.74 Aligned_cols=38 Identities=11% Similarity=-0.019 Sum_probs=27.1
Q ss_pred cCCCC-ceEEEecCCchhhhHHHHHHHhcCCceEEEEEc
Q psy4724 72 QQPKG-HAMLITIGGSGAAEVTKLATFMNEYVLFEIEIL 109 (1650)
Q Consensus 72 ~~p~G-~alLvGvgGSGrqSLtrLAafi~~~~~fqIeit 109 (1650)
.-+.| -..|||..||||.||.|+.+=+...+-=+|.+.
T Consensus 30 ~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~ 68 (275)
T 3gfo_A 30 NIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFD 68 (275)
T ss_dssp EEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEET
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEEC
Confidence 44556 567999999999999998776554444455543
No 305
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=36.34 E-value=49 Score=45.77 Aligned_cols=55 Identities=16% Similarity=0.103 Sum_probs=32.9
Q ss_pred eeehHHHHHHHHHHHHHhc---CCCCceEEEecCCchhhhHHHHHHHh----cC---CceEEEEEccc
Q psy4724 54 IVTFLYIIQHISRLCRILQ---QPKGHAMLITIGGSGAAEVTKLATFM----NE---YVLFEIEILKT 111 (1650)
Q Consensus 54 lVlF~~ai~Hv~rI~Ril~---~p~G~alLvGvgGSGrqSLtrLAafi----~~---~~~fqIeitk~ 111 (1650)
+|=-++.+ .+|.+.|. ...+-+.|+|+||.||.+|++-.++- .+ ..+|-+.++..
T Consensus 126 ~vgR~~~~---~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~ 190 (1249)
T 3sfz_A 126 FVTRKKLV---HAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQ 190 (1249)
T ss_dssp CCCCHHHH---HHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSC
T ss_pred eccHHHHH---HHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCc
Confidence 44444444 44555553 23345779999999999998765442 22 23556666653
No 306
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=36.34 E-value=1.6e+02 Score=33.66 Aligned_cols=88 Identities=9% Similarity=0.164 Sum_probs=56.6
Q ss_pred cCCeEEEecccccccccchHHHhHHHHhhcCeEEEEecCeeeeecCCeeEEEEeCCCCCCCCcccccceEE-EEeeeC-h
Q psy4724 974 TGTAVLLENIQETIDSSLEPVLLKSYYKIQNQLIMTLNNKEIEYNIKFRLYITTRLKNPHYIPEILTKITL-INFMIT-P 1051 (1650)
Q Consensus 974 ~G~~vlie~v~e~~dp~l~p~L~~~~~~~~~~~~i~ig~~~i~~~~~FrL~l~Tk~~np~~~pe~~~~~tv-inf~vt-~ 1051 (1650)
.|..|+|.++ +.+++.....|.+-+ .. +...+...+....+..+|.++.+|......+.|.+.+|+.+ +.+..- .
T Consensus 144 ~~~vl~iDEi-~~l~~~~~~~Ll~~l-e~-~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~R~~~~~~l~~~~~ 220 (350)
T 1g8p_A 144 NRGYLYIDEC-NLLEDHIVDLLLDVA-QS-GENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLDRFGLSVEVLSPRD 220 (350)
T ss_dssp TTEEEEETTG-GGSCHHHHHHHHHHH-HH-SEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHTTCSEEEECCCCCS
T ss_pred CCCEEEEeCh-hhCCHHHHHHHHHHH-hc-CceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHhhcceEEEcCCCCc
Confidence 3668889998 567666544444322 22 33445556666788889999999864333788999999976 666544 3
Q ss_pred hhHHHHHHHHHHH
Q psy4724 1052 QGLQNQLLGIVVA 1064 (1650)
Q Consensus 1052 ~gLe~qlL~~vv~ 1064 (1650)
......++...+.
T Consensus 221 ~~~~~~il~~~~~ 233 (350)
T 1g8p_A 221 VETRVEVIRRRDT 233 (350)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 4444456655444
No 307
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=36.24 E-value=22 Score=45.13 Aligned_cols=41 Identities=17% Similarity=0.156 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEEecCCchhhhHHHHHHHhcCCc
Q psy4724 58 LYIIQHISRLCRILQQPKGHAMLITIGGSGAAEVTKLATFMNEYV 102 (1650)
Q Consensus 58 ~~ai~Hv~rI~Ril~~p~G~alLvGvgGSGrqSLtrLAafi~~~~ 102 (1650)
+.+++.+. ..+. ++.|.+|+|..|+||.+|+|.-+-.....
T Consensus 47 ~~~l~~l~---~~i~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~ 87 (604)
T 3k1j_A 47 EHAVEVIK---TAAN-QKRHVLLIGEPGTGKSMLGQAMAELLPTE 87 (604)
T ss_dssp HHHHHHHH---HHHH-TTCCEEEECCTTSSHHHHHHHHHHTSCCS
T ss_pred hhhHhhcc---cccc-CCCEEEEEeCCCCCHHHHHHHHhccCCcc
Confidence 44554433 3333 45799999999999999999888776543
No 308
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=36.12 E-value=1.6e+02 Score=25.86 Aligned_cols=47 Identities=19% Similarity=0.191 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4724 767 ADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIEL 813 (1650)
Q Consensus 767 ~~l~~~~~~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~ 813 (1650)
.+.+..+..+...+.+|..+...++....+|++...-|-.|+.++..
T Consensus 5 ~e~~~~~~~i~~lE~eL~~~r~e~~~ql~EYq~LlniKl~Le~EIat 51 (74)
T 2xv5_A 5 RERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHA 51 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666677777777777777777777777777777743
No 309
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=36.08 E-value=21 Score=44.60 Aligned_cols=35 Identities=11% Similarity=0.233 Sum_probs=26.4
Q ss_pred HHHHHHHHHhcCCCCc----eEEEecCCchhhhHHHHHH
Q psy4724 62 QHISRLCRILQQPKGH----AMLITIGGSGAAEVTKLAT 96 (1650)
Q Consensus 62 ~Hv~rI~Ril~~p~G~----alLvGvgGSGrqSLtrLAa 96 (1650)
.+|.++.|-...|+|+ ..|+|..||||.|++++-+
T Consensus 355 ~eV~~~lr~~~~~~~~~~~~I~l~G~~GsGKSTia~~La 393 (546)
T 2gks_A 355 PEVAEILAETYVPKHKQGFCVWLTGLPCAGKSTIAEILA 393 (546)
T ss_dssp HHHHHHHHHHSCCGGGCCEEEEEECSTTSSHHHHHHHHH
T ss_pred hhHHHHHHHhhccccccceEEEccCCCCCCHHHHHHHHH
Confidence 3577777777766554 5788999999999987644
No 310
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=36.06 E-value=15 Score=41.18 Aligned_cols=39 Identities=13% Similarity=0.157 Sum_probs=27.6
Q ss_pred hcCCCC-ceEEEecCCchhhhHHHHHHHhcCCceEEEEEc
Q psy4724 71 LQQPKG-HAMLITIGGSGAAEVTKLATFMNEYVLFEIEIL 109 (1650)
Q Consensus 71 l~~p~G-~alLvGvgGSGrqSLtrLAafi~~~~~fqIeit 109 (1650)
+..+.| -..|+|..||||.||.|+-+=+...+-=+|.+.
T Consensus 36 l~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~ 75 (256)
T 1vpl_A 36 FEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVF 75 (256)
T ss_dssp EEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEET
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEC
Confidence 345566 566999999999999998765544444455543
No 311
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=36.05 E-value=14 Score=41.59 Aligned_cols=38 Identities=18% Similarity=0.169 Sum_probs=27.0
Q ss_pred hcCCCC-ceEEEecCCchhhhHHHHHHHhcCCceEEEEE
Q psy4724 71 LQQPKG-HAMLITIGGSGAAEVTKLATFMNEYVLFEIEI 108 (1650)
Q Consensus 71 l~~p~G-~alLvGvgGSGrqSLtrLAafi~~~~~fqIei 108 (1650)
|..+.| ...|+|..||||.||.|+-+=+..-+-=+|.+
T Consensus 40 l~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~ 78 (271)
T 2ixe_A 40 FTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLL 78 (271)
T ss_dssp EEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEE
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEE
Confidence 345566 56699999999999999866554444445554
No 312
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=35.94 E-value=20 Score=37.46 Aligned_cols=22 Identities=9% Similarity=0.128 Sum_probs=17.8
Q ss_pred ceEEEecCCchhhhHHH-HHHHh
Q psy4724 77 HAMLITIGGSGAAEVTK-LATFM 98 (1650)
Q Consensus 77 ~alLvGvgGSGrqSLtr-LAafi 98 (1650)
..+|+|..||||.|+++ ||...
T Consensus 5 ~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 5 VVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999987 55543
No 313
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=35.72 E-value=15 Score=41.29 Aligned_cols=37 Identities=22% Similarity=0.319 Sum_probs=26.3
Q ss_pred cCCCC-ceEEEecCCchhhhHHHHHHHhcCCceEEEEE
Q psy4724 72 QQPKG-HAMLITIGGSGAAEVTKLATFMNEYVLFEIEI 108 (1650)
Q Consensus 72 ~~p~G-~alLvGvgGSGrqSLtrLAafi~~~~~fqIei 108 (1650)
.-+.| -..|+|..||||.||.|+-+=+...+-=+|.+
T Consensus 46 ~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~ 83 (263)
T 2olj_A 46 HIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIII 83 (263)
T ss_dssp EECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEE
T ss_pred EEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEE
Confidence 34556 56699999999999999866554434445544
No 314
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=35.70 E-value=14 Score=39.02 Aligned_cols=17 Identities=18% Similarity=0.304 Sum_probs=14.8
Q ss_pred eEEEecCCchhhhHHHH
Q psy4724 78 AMLITIGGSGAAEVTKL 94 (1650)
Q Consensus 78 alLvGvgGSGrqSLtrL 94 (1650)
.+|+|++||||.||.+-
T Consensus 4 IVi~GPSG~GK~Tl~~~ 20 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKK 20 (186)
T ss_dssp EEEECCTTSSHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 57999999999999753
No 315
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=35.66 E-value=21 Score=38.47 Aligned_cols=28 Identities=18% Similarity=0.188 Sum_probs=20.7
Q ss_pred ceEEEecCCchhhhHHHHHHHhcCCceE
Q psy4724 77 HAMLITIGGSGAAEVTKLATFMNEYVLF 104 (1650)
Q Consensus 77 ~alLvGvgGSGrqSLtrLAafi~~~~~f 104 (1650)
..+|+|+.||||.|++++-+--.++.++
T Consensus 7 ~I~l~G~~GsGKsT~a~~La~~l~~~~i 34 (217)
T 3be4_A 7 NLILIGAPGSGKGTQCEFIKKEYGLAHL 34 (217)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCceEE
Confidence 5789999999999998865443355433
No 316
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=35.48 E-value=22 Score=37.61 Aligned_cols=27 Identities=22% Similarity=0.183 Sum_probs=21.2
Q ss_pred ceEEEecCCchhhhHHHHHHHhcCCceE
Q psy4724 77 HAMLITIGGSGAAEVTKLATFMNEYVLF 104 (1650)
Q Consensus 77 ~alLvGvgGSGrqSLtrLAafi~~~~~f 104 (1650)
...|+|..||||.|++++-+-. |+.++
T Consensus 10 ~I~i~G~~GsGKST~~~~La~~-g~~~i 36 (203)
T 1uf9_A 10 IIGITGNIGSGKSTVAALLRSW-GYPVL 36 (203)
T ss_dssp EEEEEECTTSCHHHHHHHHHHT-TCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHC-CCEEE
Confidence 4679999999999998876655 65544
No 317
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=35.45 E-value=1.7e+02 Score=23.81 Aligned_cols=46 Identities=17% Similarity=0.169 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4724 781 AQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKLERAEKLIG 826 (1650)
Q Consensus 781 ~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~~Li~ 826 (1650)
.++.++..++..|..+.+....+...+..+++.++..-.||..-|.
T Consensus 4 aki~~Lss~V~~L~~kVdqLssdV~al~~~v~~ak~eA~RAN~RlD 49 (52)
T 1jcd_A 4 AKADQASSDAQTANAKADQASNDANAARSDAQAAKDDAARANQRAD 49 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4567778888888888888888888888888877777777766554
No 318
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=35.44 E-value=24 Score=38.35 Aligned_cols=26 Identities=27% Similarity=0.279 Sum_probs=19.5
Q ss_pred ceEEEecCCchhhhHHHHHHHhcCCc
Q psy4724 77 HAMLITIGGSGAAEVTKLATFMNEYV 102 (1650)
Q Consensus 77 ~alLvGvgGSGrqSLtrLAafi~~~~ 102 (1650)
..+|+|..||||.|+++.-+--.++.
T Consensus 9 ~I~l~G~~GsGKsT~a~~La~~l~~~ 34 (227)
T 1zd8_A 9 RAVIMGAPGSGKGTVSSRITTHFELK 34 (227)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHSSSE
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCe
Confidence 57899999999999987554333544
No 319
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=35.31 E-value=2.5e+02 Score=25.27 Aligned_cols=49 Identities=12% Similarity=0.228 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4724 761 KLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELED 809 (1650)
Q Consensus 761 ~l~~~e~~l~~~~~~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~ 809 (1650)
++..++..+......+......|..+...|+.|+-+.++...+.+.++.
T Consensus 7 rv~~LEr~~~~~~q~~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~ 55 (83)
T 2xdj_A 7 RVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVE 55 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 4444443333323333334444444444444444444444444444433
No 320
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=35.18 E-value=1.6e+02 Score=35.46 Aligned_cols=26 Identities=12% Similarity=0.018 Sum_probs=10.8
Q ss_pred HhcchHHHHHHHHHHHHHHHHHHHHH
Q psy4724 753 KIVGPKKAKLAEAEADYAVQMEKLNS 778 (1650)
Q Consensus 753 ~~v~P~~~~l~~~e~~l~~~~~~L~~ 778 (1650)
+.|.-++.+|++.++.-..+....+.
T Consensus 64 krINELKnqLEdlsKnsKdseqy~k~ 89 (562)
T 3ghg_A 64 NRINKLKNSLFEYQKNNKDSHSLTTN 89 (562)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhchhHHHHHHH
Confidence 33334444444444444444433333
No 321
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=35.03 E-value=22 Score=38.16 Aligned_cols=27 Identities=7% Similarity=-0.002 Sum_probs=19.7
Q ss_pred ceEEEecCCchhhhHHHHHHHhcCCce
Q psy4724 77 HAMLITIGGSGAAEVTKLATFMNEYVL 103 (1650)
Q Consensus 77 ~alLvGvgGSGrqSLtrLAafi~~~~~ 103 (1650)
+.+|+|..||||.|+++.-+--.|+.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~ 28 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQ 28 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeE
Confidence 368999999999999886443335544
No 322
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=34.90 E-value=19 Score=37.67 Aligned_cols=21 Identities=14% Similarity=0.158 Sum_probs=17.6
Q ss_pred CCCceEEEecCCchhhhHHHH
Q psy4724 74 PKGHAMLITIGGSGAAEVTKL 94 (1650)
Q Consensus 74 p~G~alLvGvgGSGrqSLtrL 94 (1650)
+.-+.+++|.+|+||.||..-
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~ 67 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTL 67 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 445899999999999999653
No 323
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=34.89 E-value=13 Score=42.64 Aligned_cols=38 Identities=18% Similarity=0.141 Sum_probs=26.9
Q ss_pred cCCCC-ceEEEecCCchhhhHHHHHHHhcCCceEEEEEc
Q psy4724 72 QQPKG-HAMLITIGGSGAAEVTKLATFMNEYVLFEIEIL 109 (1650)
Q Consensus 72 ~~p~G-~alLvGvgGSGrqSLtrLAafi~~~~~fqIeit 109 (1650)
..+.| ..-|||..||||.||.++-+=+..-.-=+|.+.
T Consensus 76 ~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~ 114 (306)
T 3nh6_A 76 TVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRID 114 (306)
T ss_dssp EECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEET
T ss_pred EEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEEC
Confidence 34444 677999999999999998776554444455443
No 324
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=34.76 E-value=22 Score=38.19 Aligned_cols=26 Identities=15% Similarity=0.149 Sum_probs=18.7
Q ss_pred eEEEecCCchhhhHHHHHHHhcCCce
Q psy4724 78 AMLITIGGSGAAEVTKLATFMNEYVL 103 (1650)
Q Consensus 78 alLvGvgGSGrqSLtrLAafi~~~~~ 103 (1650)
.+|.|..||||.|+++.-+--.|+.+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~~~~ 28 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQIIEKYEIPH 28 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCCE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcE
Confidence 67999999999999875432224443
No 325
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=34.70 E-value=20 Score=38.19 Aligned_cols=20 Identities=30% Similarity=0.162 Sum_probs=17.3
Q ss_pred eEEEecCCchhhhHHHHHHH
Q psy4724 78 AMLITIGGSGAAEVTKLATF 97 (1650)
Q Consensus 78 alLvGvgGSGrqSLtrLAaf 97 (1650)
..|+|..||||.|++++-+-
T Consensus 5 i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 5 VGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEECSTTSCHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 46899999999999988765
No 326
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=34.70 E-value=18 Score=39.09 Aligned_cols=24 Identities=17% Similarity=0.155 Sum_probs=18.8
Q ss_pred ceEEEecCCchhhhHHHHHHHhcC
Q psy4724 77 HAMLITIGGSGAAEVTKLATFMNE 100 (1650)
Q Consensus 77 ~alLvGvgGSGrqSLtrLAafi~~ 100 (1650)
..+|+|+.||||.|++++-+--.+
T Consensus 7 ~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 7 KVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 678999999999999886543334
No 327
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=34.60 E-value=36 Score=42.14 Aligned_cols=34 Identities=18% Similarity=0.135 Sum_probs=24.8
Q ss_pred CCCceEEEecCCchhhhHHHHHHHhcC--CceEEEE
Q psy4724 74 PKGHAMLITIGGSGAAEVTKLATFMNE--YVLFEIE 107 (1650)
Q Consensus 74 p~G~alLvGvgGSGrqSLtrLAafi~~--~~~fqIe 107 (1650)
++++.+++|..||||.||.+..+-... ..+..|+
T Consensus 259 ~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitie 294 (511)
T 2oap_1 259 HKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIE 294 (511)
T ss_dssp TTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEc
Confidence 466799999999999999876554432 3455555
No 328
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=34.10 E-value=26 Score=38.84 Aligned_cols=30 Identities=10% Similarity=-0.017 Sum_probs=23.4
Q ss_pred CCCCceEEEecCCchhhhHHHHHHHhcCCc
Q psy4724 73 QPKGHAMLITIGGSGAAEVTKLATFMNEYV 102 (1650)
Q Consensus 73 ~p~G~alLvGvgGSGrqSLtrLAafi~~~~ 102 (1650)
.++-..-|+|..||||.|+.|+-+--.|+.
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~ 54 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWR 54 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCC
Confidence 344477899999999999999887555553
No 329
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=34.05 E-value=19 Score=38.38 Aligned_cols=24 Identities=17% Similarity=0.076 Sum_probs=18.7
Q ss_pred CCC-ceEEEecCCchhhhHHHHHHH
Q psy4724 74 PKG-HAMLITIGGSGAAEVTKLATF 97 (1650)
Q Consensus 74 p~G-~alLvGvgGSGrqSLtrLAaf 97 (1650)
+.| ...++|..||||.||+++-+-
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 444 567999999999999887554
No 330
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=34.04 E-value=1e+02 Score=27.39 Aligned_cols=47 Identities=17% Similarity=0.154 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4724 774 EKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKLER 820 (1650)
Q Consensus 774 ~~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~r 820 (1650)
+++...+.+++-.+..|++|.+...+..++..+|+.++.....|+..
T Consensus 14 ~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~ 60 (78)
T 3efg_A 14 ARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGK 60 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555555555555555555666666666655555543
No 331
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=33.85 E-value=1.4e+02 Score=34.39 Aligned_cols=36 Identities=14% Similarity=0.089 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4724 759 KAKLAEAEADYAVQMEKLNSKRAQLATVLGKLQALR 794 (1650)
Q Consensus 759 ~~~l~~~e~~l~~~~~~L~~~~~~l~~~~~~l~~l~ 794 (1650)
+.++++++.++..+++++...+.++...+..++..+
T Consensus 68 ~~~~~~~~a~l~~~~a~l~~a~~~~~~a~~~~~r~~ 103 (341)
T 3fpp_A 68 ENQIKEVEATLMELRAQRQQAEAELKLARVTYSRQQ 103 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555544444444333
No 332
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=33.51 E-value=19 Score=39.03 Aligned_cols=32 Identities=16% Similarity=0.153 Sum_probs=23.8
Q ss_pred HHHHHh--cCCCC-ceEEEecCCchhhhHHHHHHH
Q psy4724 66 RLCRIL--QQPKG-HAMLITIGGSGAAEVTKLATF 97 (1650)
Q Consensus 66 rI~Ril--~~p~G-~alLvGvgGSGrqSLtrLAaf 97 (1650)
.+-++| ..|.| -..|+|..||||.||.+.-+-
T Consensus 13 ~LD~~l~ggi~~G~~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 13 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp HHHHHTTSSEESSEEEEEEESTTSSHHHHHHHHHH
T ss_pred hHHhHhcCCCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 344455 34455 678999999999999998765
No 333
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=33.36 E-value=1e+02 Score=35.94 Aligned_cols=30 Identities=17% Similarity=0.224 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4724 760 AKLAEAEADYAVQMEKLNSKRAQLATVLGK 789 (1650)
Q Consensus 760 ~~l~~~e~~l~~~~~~L~~~~~~l~~~~~~ 789 (1650)
.+++.++.++..+++++...+.++...+..
T Consensus 70 ~~l~~~~a~l~~~~a~l~~a~~~~~~a~~~ 99 (369)
T 4dk0_A 70 NTLNTRKAALASYQAQLVARKTAYDVALSN 99 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444443333
No 334
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=33.35 E-value=36 Score=41.08 Aligned_cols=53 Identities=21% Similarity=0.286 Sum_probs=32.4
Q ss_pred CCceEEEecCCchhhhH-HHHHHHhc--CCceEEEEEcccCCcchhHHHHHHHHHHhc
Q psy4724 75 KGHAMLITIGGSGAAEV-TKLATFMN--EYVLFEIEILKTYGLTDWRDDLCRLMKKSG 129 (1650)
Q Consensus 75 ~G~alLvGvgGSGrqSL-trLAafi~--~~~~fqIeitk~Yg~~~f~eDLk~l~~~~g 129 (1650)
..-.+++|++||||.|+ ++||.+++ |+.+.=+.. -.|... -.+.|+..-...|
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~-D~~R~a-a~eqL~~~~~~~g 155 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCS-DTWRPG-AYHQLRQLLDRYH 155 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEC-CCSSTH-HHHHHHHHHGGGT
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeC-CCcchh-HHHHHHHHHHhcC
Confidence 35689999999999987 67998887 444433322 234333 2455644433333
No 335
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=33.27 E-value=33 Score=39.39 Aligned_cols=23 Identities=13% Similarity=0.011 Sum_probs=19.4
Q ss_pred CCceEEEecCCchhhhHHHHHHH
Q psy4724 75 KGHAMLITIGGSGAAEVTKLATF 97 (1650)
Q Consensus 75 ~G~alLvGvgGSGrqSLtrLAaf 97 (1650)
..+++|.|..|+||..|++..+.
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~ 174 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAH 174 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999865543
No 336
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=33.25 E-value=17 Score=46.10 Aligned_cols=26 Identities=12% Similarity=0.254 Sum_probs=22.5
Q ss_pred ceEEEecCCchhhhHHHHHHHhcCCc
Q psy4724 77 HAMLITIGGSGAAEVTKLATFMNEYV 102 (1650)
Q Consensus 77 ~alLvGvgGSGrqSLtrLAafi~~~~ 102 (1650)
|+||+|..|+||.+|+|..+..++..
T Consensus 329 ~vLL~GppGtGKT~LAr~la~~~~r~ 354 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISRVAPRA 354 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSSTTCSCE
T ss_pred ceEEECCCchHHHHHHHHHHHhCCCc
Confidence 99999999999999998887776543
No 337
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=33.15 E-value=18 Score=41.28 Aligned_cols=27 Identities=11% Similarity=0.121 Sum_probs=21.0
Q ss_pred cCCCC-ceEEEecCCchhhhHHHHHHHh
Q psy4724 72 QQPKG-HAMLITIGGSGAAEVTKLATFM 98 (1650)
Q Consensus 72 ~~p~G-~alLvGvgGSGrqSLtrLAafi 98 (1650)
.-+.| ...|+|..||||.||.|+-+=+
T Consensus 60 ~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 60 KIERGQLLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp EECTTCEEEEEESTTSSHHHHHHHHTTS
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 34555 5679999999999999985543
No 338
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=32.96 E-value=25 Score=43.03 Aligned_cols=38 Identities=16% Similarity=0.253 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHhcCCCCceEEEecCCchhhhHH-HHHHHhc
Q psy4724 59 YIIQHISRLCRILQQPKGHAMLITIGGSGAAEVT-KLATFMN 99 (1650)
Q Consensus 59 ~ai~Hv~rI~Ril~~p~G~alLvGvgGSGrqSLt-rLAafi~ 99 (1650)
.|+.|++ .-|..+.|+.++.|..||||.++. .+++++.
T Consensus 32 ~av~~~~---~~i~~~~~~~li~G~aGTGKT~ll~~~~~~l~ 70 (459)
T 3upu_A 32 NAFNIVM---KAIKEKKHHVTINGPAGTGATTLTKFIIEALI 70 (459)
T ss_dssp HHHHHHH---HHHHSSSCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHH---HHHhcCCCEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 4555443 345567789999999999999874 4555554
No 339
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=32.94 E-value=30 Score=41.75 Aligned_cols=53 Identities=28% Similarity=0.301 Sum_probs=33.0
Q ss_pred CCceEEEecCCchhhhH-HHHHHHhc--CCceEEEEEcccCCcchhHHHHHHHHHHhc
Q psy4724 75 KGHAMLITIGGSGAAEV-TKLATFMN--EYVLFEIEILKTYGLTDWRDDLCRLMKKSG 129 (1650)
Q Consensus 75 ~G~alLvGvgGSGrqSL-trLAafi~--~~~~fqIeitk~Yg~~~f~eDLk~l~~~~g 129 (1650)
..-.+++|++||||.|+ ++||.++. |+.+.-+..- .|... -.+.|+..-...|
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D-~~r~~-a~eqL~~~~~~~g 152 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAAD-VYRPA-AYDQLLQLGNQIG 152 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEEC-CSCHH-HHHHHHHHHHTTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecC-ccchh-HHHHHHHHHHhcC
Confidence 45689999999999987 67887776 4554433322 34443 3456654444444
No 340
>3j0f_I E2 envelope glycoprotein; alphavirus, virus assembly; 7.00A {Sindbis virus} PDB: 1z8y_J
Probab=32.94 E-value=20 Score=41.35 Aligned_cols=42 Identities=26% Similarity=0.400 Sum_probs=34.9
Q ss_pred eeeecCCeeEEEEeCC--CCCCCCcccccceEEEEeeeChhhHH
Q psy4724 1014 EIEYNIKFRLYITTRL--KNPHYIPEILTKITLINFMITPQGLQ 1055 (1650)
Q Consensus 1014 ~i~~~~~FrL~l~Tk~--~np~~~pe~~~~~tvinf~vt~~gLe 1055 (1650)
.+..+|+---+|+||. .+|++..|.-+.-+..||+||.+|+|
T Consensus 284 tL~Lhp~hPTLLTtR~LG~~p~~t~EWI~~~~~rnf~V~~eG~E 327 (423)
T 3j0f_I 284 SLQLDTDHLTLLTTRRLGANPEPTTEWIVGKTVRNFTVDRDGLE 327 (423)
T ss_pred EEEecCCCCceEEEeccCCCCCCchhheecceEEEEEECCcceE
Confidence 4556788888889885 57888899999999999999999887
No 341
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=32.87 E-value=27 Score=37.00 Aligned_cols=24 Identities=17% Similarity=0.231 Sum_probs=18.2
Q ss_pred ceEEEecCCchhhhHH-HHHHHhcCC
Q psy4724 77 HAMLITIGGSGAAEVT-KLATFMNEY 101 (1650)
Q Consensus 77 ~alLvGvgGSGrqSLt-rLAafi~~~ 101 (1650)
...|+|..||||.|++ +||... |+
T Consensus 17 ~I~l~G~~GsGKsT~~~~L~~~~-g~ 41 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQCEKLVKDY-SF 41 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS-SC
T ss_pred EEEEECCCCCCHHHHHHHHHHHc-Cc
Confidence 4678999999999998 455443 44
No 342
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=32.76 E-value=28 Score=37.10 Aligned_cols=20 Identities=20% Similarity=0.272 Sum_probs=17.1
Q ss_pred ceEEEecCCchhhhHHHHHH
Q psy4724 77 HAMLITIGGSGAAEVTKLAT 96 (1650)
Q Consensus 77 ~alLvGvgGSGrqSLtrLAa 96 (1650)
...|.|..||||.|+++.-+
T Consensus 12 ~I~l~G~~GsGKST~~~~L~ 31 (212)
T 2wwf_A 12 FIVFEGLDRSGKSTQSKLLV 31 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHH
Confidence 57899999999999987654
No 343
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=32.42 E-value=20 Score=40.42 Aligned_cols=23 Identities=13% Similarity=0.185 Sum_probs=19.0
Q ss_pred ceEEEecCCchhhhHHHHHHHhc
Q psy4724 77 HAMLITIGGSGAAEVTKLATFMN 99 (1650)
Q Consensus 77 ~alLvGvgGSGrqSLtrLAafi~ 99 (1650)
+..|||..||||.||-+.-+=+.
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 46799999999999998766443
No 344
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=32.21 E-value=25 Score=38.15 Aligned_cols=24 Identities=17% Similarity=0.185 Sum_probs=18.2
Q ss_pred eEEEecCCchhhhHHHHHHHhcCC
Q psy4724 78 AMLITIGGSGAAEVTKLATFMNEY 101 (1650)
Q Consensus 78 alLvGvgGSGrqSLtrLAafi~~~ 101 (1650)
.+|+|..||||.|+++.-+--.|+
T Consensus 3 I~l~G~~GsGKsT~a~~La~~lg~ 26 (223)
T 2xb4_A 3 ILIFGPNGSGKGTQGNLVKDKYSL 26 (223)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHHHhCC
Confidence 579999999999998765433354
No 345
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=32.10 E-value=21 Score=38.02 Aligned_cols=20 Identities=25% Similarity=0.290 Sum_probs=17.2
Q ss_pred ceEEEecCCchhhhHHHHHH
Q psy4724 77 HAMLITIGGSGAAEVTKLAT 96 (1650)
Q Consensus 77 ~alLvGvgGSGrqSLtrLAa 96 (1650)
..+|.|..||||.|+++.-+
T Consensus 6 ~I~i~G~~GsGKsT~~~~L~ 25 (213)
T 2plr_A 6 LIAFEGIDGSGKSSQATLLK 25 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHH
Confidence 57899999999999987654
No 346
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=32.06 E-value=3.4e+02 Score=25.84 Aligned_cols=33 Identities=3% Similarity=-0.003 Sum_probs=20.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4724 757 PKKAKLAEAEADYAVQMEKLNSKRAQLATVLGK 789 (1650)
Q Consensus 757 P~~~~l~~~e~~l~~~~~~L~~~~~~l~~~~~~ 789 (1650)
..+...+.++..+..++..|......-.++++.
T Consensus 3 ~t~~~~~~lq~~~~ql~~qL~k~~~~r~~Le~~ 35 (112)
T 1x79_B 3 ETRDQVKKLQLMLRQANDQLEKTMKDKQELEDF 35 (112)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666666666666555555
No 347
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=31.85 E-value=2.6e+02 Score=33.35 Aligned_cols=52 Identities=12% Similarity=0.137 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4724 772 QMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKLERAEK 823 (1650)
Q Consensus 772 ~~~~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~~ 823 (1650)
++.++++.+++|.+.++.++..++..+..++-.+.+..+++.+...+.+|..
T Consensus 319 Aer~~e~a~ael~~a~k~~a~~~er~~~t~~~~~~~~~~~~~~n~~~~~~~~ 370 (551)
T 2b5u_A 319 AERNYERARAELNQANEDVARNQERQAKAVQVYNSRKSELDAANKTLADAIA 370 (551)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhHHHHHHH
Confidence 3333344444444444444444444344444444444444444444444444
No 348
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=31.75 E-value=24 Score=37.73 Aligned_cols=22 Identities=18% Similarity=0.329 Sum_probs=17.3
Q ss_pred CCceEEEecCCchhhhHHHHHH
Q psy4724 75 KGHAMLITIGGSGAAEVTKLAT 96 (1650)
Q Consensus 75 ~G~alLvGvgGSGrqSLtrLAa 96 (1650)
+--..|+|+.||||.||.++-+
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~ 40 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALL 40 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CCEEEEECcCCCCHHHHHHHHH
Confidence 3356789999999999977543
No 349
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=31.74 E-value=19 Score=40.89 Aligned_cols=20 Identities=20% Similarity=0.134 Sum_probs=16.8
Q ss_pred ceEEEecCCchhhhHHHHHH
Q psy4724 77 HAMLITIGGSGAAEVTKLAT 96 (1650)
Q Consensus 77 ~alLvGvgGSGrqSLtrLAa 96 (1650)
..+|+|+.||||.|+++.-+
T Consensus 35 livl~G~sGsGKSTla~~L~ 54 (287)
T 1gvn_B 35 AFLLGGQPGSGKTSLRSAIF 54 (287)
T ss_dssp EEEEECCTTSCTHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 46799999999999987544
No 350
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=31.73 E-value=16 Score=40.92 Aligned_cols=36 Identities=14% Similarity=0.087 Sum_probs=25.2
Q ss_pred cCCCCceEEEecCCchhhhHHHHHHHhcCCceEEEEE
Q psy4724 72 QQPKGHAMLITIGGSGAAEVTKLATFMNEYVLFEIEI 108 (1650)
Q Consensus 72 ~~p~G~alLvGvgGSGrqSLtrLAafi~~~~~fqIei 108 (1650)
..++....|+|..||||.||.|+-+=+. -+-=+|.+
T Consensus 27 ~i~Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~ 62 (263)
T 2pjz_A 27 EVNGEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFI 62 (263)
T ss_dssp EECSSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEE
T ss_pred EECCEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEE
Confidence 4562367799999999999999866554 34344444
No 351
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=31.69 E-value=17 Score=36.73 Aligned_cols=22 Identities=18% Similarity=0.327 Sum_probs=18.0
Q ss_pred CCCCceEEEecCCchhhhHHHH
Q psy4724 73 QPKGHAMLITIGGSGAAEVTKL 94 (1650)
Q Consensus 73 ~p~G~alLvGvgGSGrqSLtrL 94 (1650)
++.-+.+++|.+|+||.||.+-
T Consensus 2 ~~~~~i~v~G~~~~GKssl~~~ 23 (168)
T 1u8z_A 2 LALHKVIMVGSGGVGKSALTLQ 23 (168)
T ss_dssp CCEEEEEEECSTTSSHHHHHHH
T ss_pred CceEEEEEECCCCCCHHHHHHH
Confidence 4556789999999999999543
No 352
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=31.63 E-value=33 Score=36.51 Aligned_cols=20 Identities=10% Similarity=0.152 Sum_probs=17.3
Q ss_pred ceEEEecCCchhhhHHHHHH
Q psy4724 77 HAMLITIGGSGAAEVTKLAT 96 (1650)
Q Consensus 77 ~alLvGvgGSGrqSLtrLAa 96 (1650)
...|+|..||||.|+++.-+
T Consensus 11 ~I~l~G~~GsGKsT~~~~L~ 30 (215)
T 1nn5_A 11 LIVLEGVDRAGKSTQSRKLV 30 (215)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 57899999999999987654
No 353
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4
Probab=31.47 E-value=3.1e+02 Score=30.77 Aligned_cols=21 Identities=5% Similarity=0.123 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy4724 791 QALRDELAQKSKDKKELEDQI 811 (1650)
Q Consensus 791 ~~l~~~~~~~~~e~~~l~~~~ 811 (1650)
+..+.+++.+.++.+...+++
T Consensus 175 eK~~~k~~~~~~~~~~a~~~Y 195 (305)
T 2efl_A 175 EKARQQAQIRHQMAEDSKADY 195 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444433333333333
No 354
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=31.46 E-value=93 Score=33.76 Aligned_cols=92 Identities=7% Similarity=0.014 Sum_probs=51.2
Q ss_pred HHHhcCCCCceEEEecCCchhhhHH-HHHHHh--cCCceEEEEEcc----------cCCcc-------hhHHHHHHHHHH
Q psy4724 68 CRILQQPKGHAMLITIGGSGAAEVT-KLATFM--NEYVLFEIEILK----------TYGLT-------DWRDDLCRLMKK 127 (1650)
Q Consensus 68 ~Ril~~p~G~alLvGvgGSGrqSLt-rLAafi--~~~~~fqIeitk----------~Yg~~-------~f~eDLk~l~~~ 127 (1650)
...+..+++=.++.|..||||.++. ++|.-. +|..+.-+.... ..|.. .. +++...+..
T Consensus 5 ~~~~~~~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~srlG~~~~~~~~~~~-~~i~~~i~~ 83 (223)
T 2b8t_A 5 NAFSKKIGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSRTGTSLPSVEVESA-PEILNYIMS 83 (223)
T ss_dssp ------CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCCCCCSSCCEEESST-HHHHHHHHS
T ss_pred hhhccCCcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHhcCCCccccccCCH-HHHHHHHHH
Confidence 3445667777788899999999964 444333 345544442222 22221 11 234333333
Q ss_pred hccCCCCCEEEEEecCCcCchhhHHHHHHHHhhh
Q psy4724 128 SGGKDAKPMTFLFSDTQIQNEVFVEHINMLLNTA 161 (1650)
Q Consensus 128 ~g~~~~k~~vFl~tD~qI~~E~fLedIN~lL~tg 161 (1650)
.- ..+++-++++...|...++.++.+..+.+.|
T Consensus 84 ~~-~~~~~dvViIDEaQ~l~~~~ve~l~~L~~~g 116 (223)
T 2b8t_A 84 NS-FNDETKVIGIDEVQFFDDRICEVANILAENG 116 (223)
T ss_dssp TT-SCTTCCEEEECSGGGSCTHHHHHHHHHHHTT
T ss_pred Hh-hCCCCCEEEEecCccCcHHHHHHHHHHHhCC
Confidence 32 3455678899999988777777777766654
No 355
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=31.41 E-value=2.1e+02 Score=26.87 Aligned_cols=50 Identities=2% Similarity=0.101 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4724 772 QMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKLERA 821 (1650)
Q Consensus 772 ~~~~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra 821 (1650)
.+++|...+.++.++.+++..|+...+...++++=.=..+..++.=++.+
T Consensus 9 l~~eL~~~~~ei~~L~~ei~eLk~~ve~lEkERDFYF~KLRdIEiLcQe~ 58 (106)
T 4e61_A 9 IQAELTKSQETIGSLNEEIEQYKGTVSTLEIEREFYFNKLRDIEILVHTT 58 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444443333333333333333
No 356
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=31.33 E-value=17 Score=36.43 Aligned_cols=18 Identities=22% Similarity=0.403 Sum_probs=15.6
Q ss_pred CceEEEecCCchhhhHHH
Q psy4724 76 GHAMLITIGGSGAAEVTK 93 (1650)
Q Consensus 76 G~alLvGvgGSGrqSLtr 93 (1650)
=+.+++|.+|+||.||.+
T Consensus 4 ~~i~v~G~~~~GKssl~~ 21 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTI 21 (166)
T ss_dssp EEEEEEESTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 368999999999999954
No 357
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=31.29 E-value=22 Score=38.33 Aligned_cols=25 Identities=20% Similarity=0.199 Sum_probs=19.9
Q ss_pred CCCC-ceEEEecCCchhhhHHHHHHH
Q psy4724 73 QPKG-HAMLITIGGSGAAEVTKLATF 97 (1650)
Q Consensus 73 ~p~G-~alLvGvgGSGrqSLtrLAaf 97 (1650)
.|.| ..+|+|..||||.+|++..+.
T Consensus 20 i~~G~~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 20 IPQGFFIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHH
T ss_pred CcCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 4555 678899999999999887663
No 358
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=31.24 E-value=23 Score=43.17 Aligned_cols=26 Identities=4% Similarity=0.092 Sum_probs=21.7
Q ss_pred CCCceEEEecCCchhhhHHHHHHHhc
Q psy4724 74 PKGHAMLITIGGSGAAEVTKLATFMN 99 (1650)
Q Consensus 74 p~G~alLvGvgGSGrqSLtrLAafi~ 99 (1650)
++.-.+|+|..||||.||.|+-+=+.
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 55589999999999999999866553
No 359
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=30.96 E-value=1.2e+02 Score=35.46 Aligned_cols=67 Identities=15% Similarity=0.232 Sum_probs=37.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4724 756 GPKKAKLAEAEADYAVQMEKLNSKRAQLATVLG----------KLQALRDELAQKSKDKKELEDQIELCKQKLERAE 822 (1650)
Q Consensus 756 ~P~~~~l~~~e~~l~~~~~~L~~~~~~l~~~~~----------~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~ 822 (1650)
.-.+.+++.++.++..+++++...+..++..+. .++..+.+++.+..+.+.++.+++..+..++.|+
T Consensus 73 ~~~~a~l~~~~a~l~~a~~~~~~a~~~~~r~~~L~~~~~~s~~~~~~a~~~~~~a~a~~~~~~~~l~~~~~~l~~a~ 149 (369)
T 4dk0_A 73 NTRKAALASYQAQLVARKTAYDVALSNYQRLSKLYGQKATSLDTLNTAKATLNNAKAEMDVVQENIKQAEIEVNTAE 149 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHGGGSSCSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334556666677777777766666655554432 3445555555555555555555555555544444
No 360
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=30.78 E-value=1.4e+02 Score=30.72 Aligned_cols=83 Identities=14% Similarity=0.249 Sum_probs=52.0
Q ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4724 746 EVYDRVIKIVGPKKAKLAEAEADYAVQMEKLNSKRA----------------QLATVLGKLQALRDELAQKSKDKKELED 809 (1650)
Q Consensus 746 ~~Y~~v~~~v~P~~~~l~~~e~~l~~~~~~L~~~~~----------------~l~~~~~~l~~l~~~~~~~~~e~~~l~~ 809 (1650)
..|.+...+|..||.++++-.+.....++++..... ++..+....+.|+..++.....++.|+.
T Consensus 38 e~y~r~sqEiq~Kr~AieAF~E~ik~FeeQ~~~qer~~~~~~~~f~~e~~~~E~~~l~~N~e~LksRL~~l~~sk~~L~e 117 (170)
T 3l4q_C 38 EEYTRTSQELQMKRTAIEAFNETIKIFEEQGQTQEKSSKEYLERFRREGNEKEMQRILLNSERLKSRIAEIHESRTKLEQ 117 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSTTGGGSSSSSCCCSSSTTTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 458888889999999888888888888887653221 3344555556666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q psy4724 810 QIELCKQKLERAEKLIGGL 828 (1650)
Q Consensus 810 ~~~~~~~rl~ra~~Li~~L 828 (1650)
++..-.....-.++=+++|
T Consensus 118 ~L~~q~~~~relERemnsL 136 (170)
T 3l4q_C 118 ELRAQASDNREIDKRMNSL 136 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 6555444444344444444
No 361
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=30.77 E-value=3e+02 Score=34.47 Aligned_cols=37 Identities=11% Similarity=0.171 Sum_probs=29.7
Q ss_pred ceeehHHHHHHHHHHHHHhcCCCCceEEEecCCchhhhHHH
Q psy4724 53 DIVTFLYIIQHISRLCRILQQPKGHAMLITIGGSGAAEVTK 93 (1650)
Q Consensus 53 ~lVlF~~ai~Hv~rI~Ril~~p~G~alLvGvgGSGrqSLtr 93 (1650)
.|++-.+|++.+.+ +..|...+.+||..|+||.||..
T Consensus 20 ~l~~~~eal~~L~~----i~~~~~~VaivG~pnvGKStLiN 56 (592)
T 1f5n_A 20 RLMANPEALKILSA----ITQPMVVVAIVGLYRTGKSYLMN 56 (592)
T ss_dssp EEEECHHHHHHHHT----CCSBEEEEEEEEBTTSSHHHHHH
T ss_pred cEEECHHHHHHHHh----ccCCCcEEEEECCCCCCHHHHHH
Confidence 46677889987765 36777889999999999999843
No 362
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=30.55 E-value=20 Score=39.04 Aligned_cols=23 Identities=22% Similarity=0.271 Sum_probs=14.6
Q ss_pred CCC-ceEEEecCCchhhhHHHHHH
Q psy4724 74 PKG-HAMLITIGGSGAAEVTKLAT 96 (1650)
Q Consensus 74 p~G-~alLvGvgGSGrqSLtrLAa 96 (1650)
+.| -..|+|+.||||.||.++-+
T Consensus 25 ~~G~ii~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 25 SVGVILVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp ECCCEEEEECSCC----CHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHH
Confidence 445 45699999999999998765
No 363
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=30.53 E-value=24 Score=42.61 Aligned_cols=29 Identities=28% Similarity=0.416 Sum_probs=22.4
Q ss_pred CceEEEecCCchhhhH-HHHHHHhc--CCceE
Q psy4724 76 GHAMLITIGGSGAAEV-TKLATFMN--EYVLF 104 (1650)
Q Consensus 76 G~alLvGvgGSGrqSL-trLAafi~--~~~~f 104 (1650)
+..+++|.+|+||.|+ .+||.+.+ |+.+.
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~G~kVl 131 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKRGLKPA 131 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHHHCCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 4899999999999986 67777765 34443
No 364
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=30.36 E-value=28 Score=37.99 Aligned_cols=26 Identities=15% Similarity=0.047 Sum_probs=19.9
Q ss_pred ceEEEecCCchhhhHHHHHHHhcCCc
Q psy4724 77 HAMLITIGGSGAAEVTKLATFMNEYV 102 (1650)
Q Consensus 77 ~alLvGvgGSGrqSLtrLAafi~~~~ 102 (1650)
+.+|+|..||||.|++++-+--.++.
T Consensus 18 ~I~l~G~~GsGKsT~a~~La~~l~~~ 43 (233)
T 1ak2_A 18 RAVLLGPPGAGKGTQAPKLAKNFCVC 43 (233)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 68899999999999988655433443
No 365
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=30.34 E-value=22 Score=37.44 Aligned_cols=25 Identities=12% Similarity=0.360 Sum_probs=20.9
Q ss_pred HHhcCCCCceEEEecCCchhhhHHH
Q psy4724 69 RILQQPKGHAMLITIGGSGAAEVTK 93 (1650)
Q Consensus 69 Ril~~p~G~alLvGvgGSGrqSLtr 93 (1650)
+.+..+.-+.+++|.+|+||.||.+
T Consensus 23 ~~~~~~~~ki~v~G~~~vGKSsLi~ 47 (192)
T 2b6h_A 23 RIFGKKQMRILMVGLDAAGKTTILY 47 (192)
T ss_dssp GTTTTSCEEEEEEESTTSSHHHHHH
T ss_pred HhccCCccEEEEECCCCCCHHHHHH
Confidence 3455667799999999999999976
No 366
>2xfc_B E2 envelope glycoprotein; receptor binding, membrane fusion, icosahedral envelo; 9.00A {Chikungunya virus}
Probab=30.25 E-value=19 Score=41.53 Aligned_cols=44 Identities=14% Similarity=0.221 Sum_probs=38.0
Q ss_pred CeeeeecCCeeEEEEeCC--CCCCCCcccccceEEEEeeeChhhHH
Q psy4724 1012 NKEIEYNIKFRLYITTRL--KNPHYIPEILTKITLINFMITPQGLQ 1055 (1650)
Q Consensus 1012 ~~~i~~~~~FrL~l~Tk~--~np~~~pe~~~~~tvinf~vt~~gLe 1055 (1650)
+-.+..+|+---+|+||. ..|++..|.-+.-+..||+||.+|+|
T Consensus 282 ~v~L~Lhp~hPTLLTtR~LG~~p~~t~EWI~~~~~rnf~V~~eG~E 327 (423)
T 2xfc_B 282 QVIMLLYPDHPTLLSYRNMGEEPNYQEEWVMHKKEVVLTVPTEGLE 327 (423)
T ss_dssp EEEEEECCSSCEEEEEEC-CCCCCCEEEEECSCEEEEEECCTTCEE
T ss_pred eEEEEecCCCCceEEEeccCCCCCCcceeeecceEEEEEeCCCceE
Confidence 344567888889999996 57999999999999999999999986
No 367
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=30.23 E-value=39 Score=36.84 Aligned_cols=27 Identities=15% Similarity=0.043 Sum_probs=21.0
Q ss_pred CCCC-ceEEEecCCchhhhH-HHHHHHhc
Q psy4724 73 QPKG-HAMLITIGGSGAAEV-TKLATFMN 99 (1650)
Q Consensus 73 ~p~G-~alLvGvgGSGrqSL-trLAafi~ 99 (1650)
.|+| -.+++|..||||.+| ..+|...+
T Consensus 20 l~~G~~~~i~G~~GsGKTtl~~~~~~~~~ 48 (247)
T 2dr3_A 20 IPERNVVLLSGGPGTGKTIFSQQFLWNGL 48 (247)
T ss_dssp EETTCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4555 668999999999999 56776654
No 368
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=30.20 E-value=5.5e+02 Score=31.10 Aligned_cols=26 Identities=8% Similarity=0.067 Sum_probs=15.4
Q ss_pred HHhhhchhhccHHHHHHHHHHHHhhc
Q psy4724 824 LIGGLGGEKTRWSEASANLSKALVNC 849 (1650)
Q Consensus 824 Li~~L~~E~~rW~~~~~~~~~~~~~l 849 (1650)
.+..+...+.+|...+..+=..++.+
T Consensus 211 ~v~~~n~~~~~y~~~~~~~~~~lQ~l 236 (486)
T 3haj_A 211 SLKELDQGTPQYMENMEQVFEQCQQF 236 (486)
T ss_dssp HHHHHHTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555677887766665555554
No 369
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=30.01 E-value=18 Score=36.88 Aligned_cols=21 Identities=14% Similarity=0.056 Sum_probs=17.4
Q ss_pred CCceEEEecCCchhhhHHHHH
Q psy4724 75 KGHAMLITIGGSGAAEVTKLA 95 (1650)
Q Consensus 75 ~G~alLvGvgGSGrqSLtrLA 95 (1650)
.....|||.+|+||.||.+.-
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l 23 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNAL 23 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHH
Confidence 356889999999999997653
No 370
>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils, endocytosis/exocytosis, protein complex, endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A 2rnd_A
Probab=29.94 E-value=3e+02 Score=30.03 Aligned_cols=39 Identities=21% Similarity=0.229 Sum_probs=23.1
Q ss_pred hhhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Q psy4724 741 QVLAMEVYDRVIKIVGPKKAKLAEAEADYAVQMEKLNSK 779 (1650)
Q Consensus 741 Wv~A~~~Y~~v~~~v~P~~~~l~~~e~~l~~~~~~L~~~ 779 (1650)
|+.-+..|...++.+.-...+.....-.++.++..+...
T Consensus 132 vi~Pl~~~~~~~~~i~~~ikKR~~k~lDyD~~~~~l~kl 170 (251)
T 2fic_A 132 ALLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHYESL 170 (251)
T ss_dssp THHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 566666666666666655555555555666555555544
No 371
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=29.88 E-value=33 Score=41.49 Aligned_cols=32 Identities=16% Similarity=0.377 Sum_probs=23.9
Q ss_pred CCceEEEecCCchhhhH-HHHHHHhc---CCceEEE
Q psy4724 75 KGHAMLITIGGSGAAEV-TKLATFMN---EYVLFEI 106 (1650)
Q Consensus 75 ~G~alLvGvgGSGrqSL-trLAafi~---~~~~fqI 106 (1650)
....+++|.||+||.|+ +.||++++ |+.+.=|
T Consensus 100 ~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllv 135 (433)
T 2xxa_A 100 PAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVV 135 (433)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEE
Confidence 34688899999999987 67888876 4555444
No 372
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=29.79 E-value=20 Score=36.23 Aligned_cols=18 Identities=11% Similarity=0.305 Sum_probs=15.8
Q ss_pred ceEEEecCCchhhhHHHH
Q psy4724 77 HAMLITIGGSGAAEVTKL 94 (1650)
Q Consensus 77 ~alLvGvgGSGrqSLtrL 94 (1650)
+.+++|.+|+||.||.+-
T Consensus 7 ~i~v~G~~~~GKssl~~~ 24 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQR 24 (168)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHH
Confidence 578999999999999763
No 373
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=29.78 E-value=33 Score=36.32 Aligned_cols=26 Identities=12% Similarity=-0.014 Sum_probs=20.7
Q ss_pred ceEEEecCCchhhhHHHHHHHhcCCc
Q psy4724 77 HAMLITIGGSGAAEVTKLATFMNEYV 102 (1650)
Q Consensus 77 ~alLvGvgGSGrqSLtrLAafi~~~~ 102 (1650)
...+.|..||||.|+++.-+-..|+.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~ 29 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVP 29 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCc
Confidence 67799999999999998766544543
No 374
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=29.71 E-value=1.7e+02 Score=24.44 Aligned_cols=44 Identities=11% Similarity=0.095 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4724 772 QMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCK 815 (1650)
Q Consensus 772 ~~~~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~ 815 (1650)
.+..+...+.++..+...++....+|++...-|-.|+.++..-.
T Consensus 5 ~q~~i~~le~el~~~r~e~~~q~~eYq~LlniK~~Le~EIatYR 48 (59)
T 1gk6_A 5 LEDKVEELLSKNYHLENEVARLKKLVGDLLNVKMALDIEIATYR 48 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 44455555566666666667777777777777777777775443
No 375
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=29.66 E-value=30 Score=39.88 Aligned_cols=26 Identities=8% Similarity=0.069 Sum_probs=20.3
Q ss_pred CCCC-ceEEEecCCchhhhHHHHHHHh
Q psy4724 73 QPKG-HAMLITIGGSGAAEVTKLATFM 98 (1650)
Q Consensus 73 ~p~G-~alLvGvgGSGrqSLtrLAafi 98 (1650)
.+.| -.-|+|..||||.||+++-+-+
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhh
Confidence 3445 5669999999999999876554
No 376
>2yew_A Capsid protein, coat protein; alphavirus, molecular dynamics; 5.00A {Barmah forest virus}
Probab=29.65 E-value=5.6 Score=41.73 Aligned_cols=16 Identities=19% Similarity=0.138 Sum_probs=0.0
Q ss_pred CCCCchhhHHHHHHhh
Q psy4724 1561 SLKPLGSYIVDLLARR 1576 (1650)
Q Consensus 1561 s~k~L~~w~~dl~~r~ 1576 (1650)
++..|.+.|+.|..+-
T Consensus 40 QiQQL~~Av~aLt~~Q 55 (253)
T 2yew_A 40 QLQQLVAALGALALQP 55 (253)
T ss_dssp ----------------
T ss_pred HHHHHHHHHHHHhhcc
Confidence 4556777787777766
No 377
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=29.58 E-value=22 Score=41.62 Aligned_cols=38 Identities=13% Similarity=0.023 Sum_probs=27.0
Q ss_pred cCCCC-ceEEEecCCchhhhHHHHHHHhcCCceEEEEEc
Q psy4724 72 QQPKG-HAMLITIGGSGAAEVTKLATFMNEYVLFEIEIL 109 (1650)
Q Consensus 72 ~~p~G-~alLvGvgGSGrqSLtrLAafi~~~~~fqIeit 109 (1650)
..+.| -..|+|..||||.||.|+-+=+...+-=+|.+.
T Consensus 22 ~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~ 60 (348)
T 3d31_A 22 KVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLD 60 (348)
T ss_dssp EECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEET
T ss_pred EEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEEC
Confidence 33444 667999999999999999776654444455443
No 378
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=29.56 E-value=3.1e+02 Score=25.55 Aligned_cols=29 Identities=31% Similarity=0.425 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4724 774 EKLNSKRAQLATVLGKLQALRDELAQKSK 802 (1650)
Q Consensus 774 ~~L~~~~~~l~~~~~~l~~l~~~~~~~~~ 802 (1650)
..+..-+..+..++.+|++|+.++.++++
T Consensus 75 ~tl~~R~~~Vsalq~KiaeLKrqLAd~va 103 (107)
T 2k48_A 75 STLQNRRAAVSTLETKLGELKRQLADLVA 103 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566777788888888888777765
No 379
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=29.47 E-value=1.9e+02 Score=35.16 Aligned_cols=30 Identities=20% Similarity=0.072 Sum_probs=14.2
Q ss_pred HHHHHHhhhchhhccHHHHHHHHHHHHhhc
Q psy4724 820 RAEKLIGGLGGEKTRWSEASANLSKALVNC 849 (1650)
Q Consensus 820 ra~~Li~~L~~E~~rW~~~~~~~~~~~~~l 849 (1650)
++.+..+....|..+|.+.-+.++..+..+
T Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (487)
T 3oja_A 432 NAIRDWDMYQHKETQLAEENARLKKLNGEA 461 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhhhhhhHHHHHHHHhhhhhhhhhhh
Confidence 344444444445555555444444444443
No 380
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=29.46 E-value=30 Score=37.21 Aligned_cols=25 Identities=20% Similarity=-0.035 Sum_probs=19.5
Q ss_pred ceEEEecCCchhhhHHHHHHHhcCCc
Q psy4724 77 HAMLITIGGSGAAEVTKLATFMNEYV 102 (1650)
Q Consensus 77 ~alLvGvgGSGrqSLtrLAafi~~~~ 102 (1650)
...|+|..||||.|++++-+- .|+.
T Consensus 6 ~I~i~G~~GSGKST~~~~L~~-lg~~ 30 (218)
T 1vht_A 6 IVALTGGIGSGKSTVANAFAD-LGIN 30 (218)
T ss_dssp EEEEECCTTSCHHHHHHHHHH-TTCE
T ss_pred EEEEECCCCCCHHHHHHHHHH-cCCE
Confidence 467999999999999887664 3543
No 381
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=29.41 E-value=2.2e+02 Score=22.73 Aligned_cols=25 Identities=20% Similarity=0.268 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4724 784 ATVLGKLQALRDELAQKSKDKKELE 808 (1650)
Q Consensus 784 ~~~~~~l~~l~~~~~~~~~e~~~l~ 808 (1650)
..+-.++..|+...++..+|+++|.
T Consensus 14 ~~L~~kv~~Le~~c~~~eQEieRL~ 38 (48)
T 3vmx_A 14 IQLATKIQHLEFSCSEKEQEIERLN 38 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHH
Confidence 3334455555555555554444443
No 382
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=29.39 E-value=1.1e+02 Score=36.45 Aligned_cols=27 Identities=22% Similarity=0.315 Sum_probs=18.0
Q ss_pred CCCcceEEEcCCCcChHH---HHHHHHHhc
Q psy4724 1368 NCCTPLIFILSAGSDPMD---LLLKFNSDM 1394 (1650)
Q Consensus 1368 ~~~~P~ifils~g~DP~~---~l~~~a~~~ 1394 (1650)
++.|=+|..+||..+-.. .-++||.+.
T Consensus 365 nskt~mi~~vsP~~~~~~ETl~TL~fA~rv 394 (403)
T 4etp_A 365 DSKTLMFVNISPSSSHINETLNSLRFASKV 394 (403)
T ss_dssp TCEEEEEEEECCSGGGHHHHHHHHHHHHHH
T ss_pred CceEEEEEEeCCchhhHHHHHHHHHHHHHH
Confidence 356778888888765433 346788764
No 383
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=29.39 E-value=6.7e+02 Score=30.13 Aligned_cols=61 Identities=10% Similarity=0.012 Sum_probs=29.8
Q ss_pred chhhHHHHHHH-HHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4724 740 FQVLAMEVYDR-VIKIVGPKKAKLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQK 800 (1650)
Q Consensus 740 ~Wv~A~~~Y~~-v~~~v~P~~~~l~~~e~~l~~~~~~L~~~~~~l~~~~~~l~~l~~~~~~~ 800 (1650)
.|.-.+.+|.+ |-+.+.-++..++++++.-..+..-...++..+...+.++........+.
T Consensus 86 ~l~D~L~k~q~~V~~~LqeLe~~l~~lsn~Ts~~~~~i~~Iq~slk~~Q~Qi~en~n~~~~~ 147 (464)
T 1m1j_B 86 ELQTTLLKQEKTVKPVLRDLKDRVAKFSDTSTTMYQYVNMIDNKLVKTQKQRKDNDIILSEY 147 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcccccccchhhHHHHH
Confidence 55555666655 44555555555555555444444444444444444444444444333333
No 384
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=29.37 E-value=1.2e+02 Score=22.42 Aligned_cols=26 Identities=12% Similarity=0.243 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4724 791 QALRDELAQKSKDKKELEDQIELCKQ 816 (1650)
Q Consensus 791 ~~l~~~~~~~~~e~~~l~~~~~~~~~ 816 (1650)
.+|++..++...++..|+.++...+.
T Consensus 4 nQLE~KVEeLl~~~~~Le~eV~RLk~ 29 (36)
T 1kd8_B 4 KQLKAKVEELKSKLWHLKNKVARLKK 29 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 34444445555555555555554443
No 385
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=29.35 E-value=26 Score=38.67 Aligned_cols=30 Identities=13% Similarity=-0.038 Sum_probs=21.1
Q ss_pred hcCCCC-ceEEEecCCchhhhHHHHHHHhcC
Q psy4724 71 LQQPKG-HAMLITIGGSGAAEVTKLATFMNE 100 (1650)
Q Consensus 71 l~~p~G-~alLvGvgGSGrqSLtrLAafi~~ 100 (1650)
|..+.| -.-|+|..||||.||+++-+-..|
T Consensus 20 l~i~~g~iigI~G~~GsGKSTl~k~L~~~lG 50 (245)
T 2jeo_A 20 FQSMRPFLIGVSGGTASGKSTVCEKIMELLG 50 (245)
T ss_dssp ---CCSEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred ccCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 445566 466999999999999996655434
No 386
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=29.33 E-value=25 Score=36.45 Aligned_cols=27 Identities=11% Similarity=0.254 Sum_probs=20.3
Q ss_pred HHHhcC--CCCceEEEecCCchhhhHHHH
Q psy4724 68 CRILQQ--PKGHAMLITIGGSGAAEVTKL 94 (1650)
Q Consensus 68 ~Ril~~--p~G~alLvGvgGSGrqSLtrL 94 (1650)
.+.... +.-..++||.+|+||.||.+-
T Consensus 7 ~~~~~~~~~~~ki~ivG~~~vGKSsL~~~ 35 (181)
T 1fzq_A 7 RKLKSAPDQEVRILLLGLDNAGKTTLLKQ 35 (181)
T ss_dssp HHCSSCCSSCEEEEEEESTTSSHHHHHHH
T ss_pred HHHhccCCCceEEEEECCCCCCHHHHHHH
Confidence 334443 456899999999999999654
No 387
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=29.14 E-value=47 Score=38.35 Aligned_cols=33 Identities=9% Similarity=0.113 Sum_probs=23.4
Q ss_pred HHHhcCC-CC---ceEEEecCCchhhhHHHHHHHhcC
Q psy4724 68 CRILQQP-KG---HAMLITIGGSGAAEVTKLATFMNE 100 (1650)
Q Consensus 68 ~Ril~~p-~G---~alLvGvgGSGrqSLtrLAafi~~ 100 (1650)
..++..+ .+ -.-|+|..||||.||++.-+-+.+
T Consensus 81 ~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 81 YQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp HHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred HHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4555554 23 367889999999999987766643
No 388
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=29.07 E-value=3.9e+02 Score=26.92 Aligned_cols=66 Identities=20% Similarity=0.153 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy4724 760 AKLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKLERAEKLIGGL 828 (1650)
Q Consensus 760 ~~l~~~e~~l~~~~~~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~~Li~~L 828 (1650)
..++++-..|.+....|+....+-..+...|......+.+...+.+ ..++.++.++.|...+-..|
T Consensus 75 ~~veeA~~~L~eYn~rL~~E~~dR~~L~~~L~~~~~~~~~~l~e~e---~~leeyK~Kl~rv~~vkkeL 140 (152)
T 4fla_A 75 KTVDEACLLLAEYNGRLAAELEDRRQLARMLVEYTQNQKDVLSEKE---KKLEEYKQKLARVTQVRKEL 140 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666666555556666666666555555544433 44555566666665554443
No 389
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=28.76 E-value=1.7e+02 Score=35.58 Aligned_cols=40 Identities=13% Similarity=0.067 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhchhhccHHHHHHHHHHHH
Q psy4724 807 LEDQIELCKQKLERAEKLIGGLGGEKTRWSEASANLSKAL 846 (1650)
Q Consensus 807 l~~~~~~~~~rl~ra~~Li~~L~~E~~rW~~~~~~~~~~~ 846 (1650)
++.+.+....-.+.....+..|..|+.|=+..+.++....
T Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (487)
T 3oja_A 426 QQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLAL 465 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhh
Confidence 3333333444444445555555555555555555554443
No 390
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=28.68 E-value=26 Score=41.30 Aligned_cols=37 Identities=16% Similarity=0.103 Sum_probs=26.7
Q ss_pred cCCCC-ceEEEecCCchhhhHHHHHHHhcCCceEEEEE
Q psy4724 72 QQPKG-HAMLITIGGSGAAEVTKLATFMNEYVLFEIEI 108 (1650)
Q Consensus 72 ~~p~G-~alLvGvgGSGrqSLtrLAafi~~~~~fqIei 108 (1650)
.-+.| -..|+|..||||.||.|+-+=+...+-=+|.+
T Consensus 25 ~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i 62 (362)
T 2it1_A 25 KIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYF 62 (362)
T ss_dssp EECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEE
T ss_pred EECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEE
Confidence 34555 56699999999999999877665444445544
No 391
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=28.67 E-value=57 Score=39.21 Aligned_cols=53 Identities=23% Similarity=0.263 Sum_probs=30.2
Q ss_pred CCceEEEecCCchhhhH-HHHHHHhc--CCceEEEEEcccCCcchhHHHHHHHHHHhc
Q psy4724 75 KGHAMLITIGGSGAAEV-TKLATFMN--EYVLFEIEILKTYGLTDWRDDLCRLMKKSG 129 (1650)
Q Consensus 75 ~G~alLvGvgGSGrqSL-trLAafi~--~~~~fqIeitk~Yg~~~f~eDLk~l~~~~g 129 (1650)
....+++|.+||||.|+ ..||.++. |..+.=+. -.+..+...+-|+..-...|
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd--~D~~r~aa~~qL~~~~~~~g 153 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVA--ADTQRPAAREQLRLLGEKVG 153 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE--CCSSCHHHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEee--ccccCchhHHHHHHhcccCC
Confidence 34577889999999987 56676665 34443332 23333444444544333333
No 392
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=28.65 E-value=36 Score=37.15 Aligned_cols=30 Identities=17% Similarity=0.149 Sum_probs=20.8
Q ss_pred CCC-ceEEEecCCchhhhHHHH-HHHhc-CCce
Q psy4724 74 PKG-HAMLITIGGSGAAEVTKL-ATFMN-EYVL 103 (1650)
Q Consensus 74 p~G-~alLvGvgGSGrqSLtrL-Aafi~-~~~~ 103 (1650)
.+| -..+.|+.||||.|++++ +..+. ++.+
T Consensus 24 ~~g~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~ 56 (229)
T 4eaq_A 24 AMSAFITFEGPEGSGKTTVINEVYHRLVKDYDV 56 (229)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHTTTSCE
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCc
Confidence 345 567889999999999765 44444 3444
No 393
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=28.57 E-value=41 Score=42.51 Aligned_cols=45 Identities=20% Similarity=0.313 Sum_probs=29.2
Q ss_pred HHHHHHHHHh--cCCCC----ceEEEecCCchhhhHHHHHH-Hhc--CCceEEE
Q psy4724 62 QHISRLCRIL--QQPKG----HAMLITIGGSGAAEVTKLAT-FMN--EYVLFEI 106 (1650)
Q Consensus 62 ~Hv~rI~Ril--~~p~G----~alLvGvgGSGrqSLtrLAa-fi~--~~~~fqI 106 (1650)
.||+|-.|-- .|++| ..+|+|..||||.|+++.-+ .+. |+.++-+
T Consensus 33 ~~v~~~~r~~~~~~~~~~~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~l 86 (630)
T 1x6v_B 33 HHVSRNKRGQVVGTRGGFRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTL 86 (630)
T ss_dssp -CCCHHHHHHHSSSSSSCCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cCCCHHHHHHHhCCCccCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEe
Confidence 3566665553 44323 37899999999999988644 442 6665555
No 394
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=28.53 E-value=26 Score=41.21 Aligned_cols=37 Identities=16% Similarity=0.080 Sum_probs=26.9
Q ss_pred CCCC-ceEEEecCCchhhhHHHHHHHhcCCceEEEEEc
Q psy4724 73 QPKG-HAMLITIGGSGAAEVTKLATFMNEYVLFEIEIL 109 (1650)
Q Consensus 73 ~p~G-~alLvGvgGSGrqSLtrLAafi~~~~~fqIeit 109 (1650)
-+.| -.-|+|..||||.||.|+-+=+..-+-=+|.+.
T Consensus 26 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~ 63 (359)
T 2yyz_A 26 VKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFD 63 (359)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEET
T ss_pred EcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEEC
Confidence 3445 567999999999999999776655444555543
No 395
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=28.50 E-value=3e+02 Score=24.43 Aligned_cols=46 Identities=11% Similarity=0.198 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhccHHHH
Q psy4724 793 LRDELAQKSKDKKELEDQIELCKQKLERAEKLIGGLGGEKTRWSEA 838 (1650)
Q Consensus 793 l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~~Li~~L~~E~~rW~~~ 838 (1650)
|+-...+...|+.+.+..+..++.-+..-+..+..=..|..|+..+
T Consensus 31 Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~ 76 (81)
T 3qh9_A 31 LKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQ 76 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3333333333333333333333333333333333333444444443
No 396
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=28.49 E-value=22 Score=35.68 Aligned_cols=17 Identities=6% Similarity=0.206 Sum_probs=15.0
Q ss_pred ceEEEecCCchhhhHHH
Q psy4724 77 HAMLITIGGSGAAEVTK 93 (1650)
Q Consensus 77 ~alLvGvgGSGrqSLtr 93 (1650)
+.+++|.+|+||.||.+
T Consensus 3 ki~v~G~~~~GKSsli~ 19 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFN 19 (161)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999999964
No 397
>2v0o_A FCHO2, FCH domain only protein 2; lipid-binding protein, EFC domain, vesicle trafficking, membrane curvature, endocytosis, exocytosis, F-BAR domain; 2.30A {Homo sapiens}
Probab=28.44 E-value=6.1e+02 Score=27.69 Aligned_cols=23 Identities=4% Similarity=0.109 Sum_probs=11.1
Q ss_pred HhhhchhhccHHHHHHHHHHHHh
Q psy4724 825 IGGLGGEKTRWSEASANLSKALV 847 (1650)
Q Consensus 825 i~~L~~E~~rW~~~~~~~~~~~~ 847 (1650)
+..+...+.+|...+..+-..+.
T Consensus 183 v~~~n~~~~~~~~~~~~~~~~lQ 205 (276)
T 2v0o_A 183 VEKYALAKADFEQKMTETAQKFQ 205 (276)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555666554444433333
No 398
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=28.40 E-value=22 Score=36.82 Aligned_cols=22 Identities=9% Similarity=0.279 Sum_probs=18.4
Q ss_pred CCCCceEEEecCCchhhhHHHH
Q psy4724 73 QPKGHAMLITIGGSGAAEVTKL 94 (1650)
Q Consensus 73 ~p~G~alLvGvgGSGrqSLtrL 94 (1650)
.+.-+.+++|..|+||.||.+-
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~ 37 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKK 37 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHH
T ss_pred CCeeEEEEECCCCCCHHHHHHH
Confidence 5677999999999999999653
No 399
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=28.34 E-value=26 Score=41.07 Aligned_cols=37 Identities=19% Similarity=0.157 Sum_probs=26.4
Q ss_pred CCCC-ceEEEecCCchhhhHHHHHHHhcCCceEEEEEc
Q psy4724 73 QPKG-HAMLITIGGSGAAEVTKLATFMNEYVLFEIEIL 109 (1650)
Q Consensus 73 ~p~G-~alLvGvgGSGrqSLtrLAafi~~~~~fqIeit 109 (1650)
.+.| -..|+|..||||.||.|+-+=+...+-=+|.+.
T Consensus 38 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~ 75 (355)
T 1z47_A 38 IREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIG 75 (355)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEET
T ss_pred ECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEC
Confidence 3444 667999999999999998776554444455443
No 400
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=28.32 E-value=20 Score=38.35 Aligned_cols=21 Identities=10% Similarity=0.226 Sum_probs=16.7
Q ss_pred eEEEecCCchhhhHHHH-HHHh
Q psy4724 78 AMLITIGGSGAAEVTKL-ATFM 98 (1650)
Q Consensus 78 alLvGvgGSGrqSLtrL-Aafi 98 (1650)
..++|+.||||.|++++ +.++
T Consensus 3 I~i~G~~GsGKsTl~~~L~~~l 24 (214)
T 1gtv_A 3 IAIEGVDGAGKRTLVEKLSGAF 24 (214)
T ss_dssp EEEEEEEEEEHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHH
Confidence 46899999999999764 5554
No 401
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=28.28 E-value=27 Score=40.54 Aligned_cols=25 Identities=20% Similarity=0.211 Sum_probs=18.9
Q ss_pred CCC-ceEEEecCCchhhhHHHHHHHh
Q psy4724 74 PKG-HAMLITIGGSGAAEVTKLATFM 98 (1650)
Q Consensus 74 p~G-~alLvGvgGSGrqSLtrLAafi 98 (1650)
++| -.+|||+.||||.||.+.-+..
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~ 152 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANW 152 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 344 5779999999999997655443
No 402
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=28.26 E-value=26 Score=41.41 Aligned_cols=35 Identities=17% Similarity=0.170 Sum_probs=25.5
Q ss_pred CCCceEEEecCCchhhhHHHHHHHhcCCceEEEEE
Q psy4724 74 PKGHAMLITIGGSGAAEVTKLATFMNEYVLFEIEI 108 (1650)
Q Consensus 74 p~G~alLvGvgGSGrqSLtrLAafi~~~~~fqIei 108 (1650)
++.-..|+|..||||.||.|+-+=+..-+-=+|.+
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i 62 (372)
T 1g29_1 28 DGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYI 62 (372)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEE
T ss_pred CCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEE
Confidence 34466799999999999999977665444444544
No 403
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=27.97 E-value=2.1e+02 Score=31.78 Aligned_cols=24 Identities=21% Similarity=0.180 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy4724 760 AKLAEAEADYAVQMEKLNSKRAQL 783 (1650)
Q Consensus 760 ~~l~~~e~~l~~~~~~L~~~~~~l 783 (1650)
.+++.++.++..+++++...+.++
T Consensus 60 ~~l~~a~a~l~~a~a~l~~a~~~~ 83 (277)
T 2f1m_A 60 ATYDSAKGDLAKAQAAANIAQLTV 83 (277)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555444444
No 404
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=27.88 E-value=4.2e+02 Score=31.02 Aligned_cols=84 Identities=10% Similarity=0.254 Sum_probs=47.7
Q ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4724 747 VYDRVIKIVGPKKAKLAEAEADYAVQMEKLNSKRA----------------QLATVLGKLQALRDELAQKSKDKKELEDQ 810 (1650)
Q Consensus 747 ~Y~~v~~~v~P~~~~l~~~e~~l~~~~~~L~~~~~----------------~l~~~~~~l~~l~~~~~~~~~e~~~l~~~ 810 (1650)
.|.....+|.=|+.+++.-.+.....++++...+. ++..+.+..+.|+..+++....+++|+++
T Consensus 148 ~~~~~~~e~~~k~~a~~af~~~~~~f~~q~~~~e~~~~~~~~~~~~~~~~~e~~~~~~n~~~l~~~~~~~~~~~~~l~~~ 227 (373)
T 3hhm_B 148 EYTRTSQEIQMKRTAIEAFNETIKIFEEQCQTQERYSKEYIEKFKREGNEKEIQRIMHNYDKLKSRISEIIDSRRRLEED 227 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 35555666666666666665555555554433221 44556666666666666666666666666
Q ss_pred HHHHHHHHHHHHHHHhhhch
Q psy4724 811 IELCKQKLERAEKLIGGLGG 830 (1650)
Q Consensus 811 ~~~~~~rl~ra~~Li~~L~~ 830 (1650)
+..-.....-.++-+++|..
T Consensus 228 ~~~~~~~~~~~~~~~~~lkp 247 (373)
T 3hhm_B 228 LKKQAAEYREIDKRMNSIKP 247 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccCh
Confidence 66555554445555555544
No 405
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=27.78 E-value=38 Score=35.76 Aligned_cols=29 Identities=7% Similarity=-0.064 Sum_probs=21.4
Q ss_pred ceEEEecCCchhhhHHHHHH-HhcCCceEE
Q psy4724 77 HAMLITIGGSGAAEVTKLAT-FMNEYVLFE 105 (1650)
Q Consensus 77 ~alLvGvgGSGrqSLtrLAa-fi~~~~~fq 105 (1650)
...|+|..||||.|++++-+ .+.|+.+..
T Consensus 6 ~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~ 35 (204)
T 2v54_A 6 LIVFEGLDKSGKTTQCMNIMESIPANTIKY 35 (204)
T ss_dssp EEEEECCTTSSHHHHHHHHHHTSCGGGEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHCCCceEE
Confidence 57899999999999987654 333565544
No 406
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=27.71 E-value=1e+02 Score=35.40 Aligned_cols=36 Identities=14% Similarity=0.054 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4724 781 AQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQ 816 (1650)
Q Consensus 781 ~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~ 816 (1650)
..+...++++..|+..++....+.++|+.++...+.
T Consensus 19 ~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~ 54 (323)
T 1lwu_C 19 QIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQ 54 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444445444444443
No 407
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=27.68 E-value=22 Score=41.71 Aligned_cols=24 Identities=21% Similarity=0.383 Sum_probs=20.2
Q ss_pred ceEEEecCCchhhhHHHHHHHhcC
Q psy4724 77 HAMLITIGGSGAAEVTKLATFMNE 100 (1650)
Q Consensus 77 ~alLvGvgGSGrqSLtrLAafi~~ 100 (1650)
..||+|-|||||.|+.|=...+.+
T Consensus 11 k~lllG~~~sGKsT~~kq~~~~~~ 34 (354)
T 2xtz_A 11 KLLLLGAGESGKSTIFKQIKLLFQ 34 (354)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHS
T ss_pred eEEEECCCCCcHHHHHHHHHHHhc
Confidence 379999999999999998876643
No 408
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=27.58 E-value=4.5e+02 Score=31.59 Aligned_cols=55 Identities=16% Similarity=0.217 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4724 758 KKAKLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQ 816 (1650)
Q Consensus 758 ~~~~l~~~e~~l~~~~~~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~ 816 (1650)
-.+.+++++++++....++... .+....-..||+++++......+++.+...|..
T Consensus 371 ~eeal~~~~~~i~~~l~~~~~~----~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (471)
T 3mq9_A 371 VDEALKDAQTRITAARDGLRAV----MEARNVTHLLQQELTEAQKGFQDVEAQAATANH 425 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHH----HHhhhHHHHHHHHHHHHhhhHHHHHHHhhhcch
Confidence 3456666666655554443221 122233333444444444444444444444443
No 409
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=27.47 E-value=29 Score=40.76 Aligned_cols=37 Identities=16% Similarity=0.166 Sum_probs=26.0
Q ss_pred cCCCC-ceEEEecCCchhhhHHHHHHHhcCCceEEEEE
Q psy4724 72 QQPKG-HAMLITIGGSGAAEVTKLATFMNEYVLFEIEI 108 (1650)
Q Consensus 72 ~~p~G-~alLvGvgGSGrqSLtrLAafi~~~~~fqIei 108 (1650)
.-+.| -.-|+|..||||.||.|+-+=+-.-+-=+|.+
T Consensus 26 ~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i 63 (359)
T 3fvq_A 26 SLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISL 63 (359)
T ss_dssp EECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEE
T ss_pred EEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEE
Confidence 34555 55699999999999999877655444444544
No 410
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=27.43 E-value=4e+02 Score=25.17 Aligned_cols=73 Identities=19% Similarity=0.236 Sum_probs=37.5
Q ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4724 744 AMEVYDRVIKIVGPKKAKLAEAEADYAVQMEKLNSK----RAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQ 816 (1650)
Q Consensus 744 A~~~Y~~v~~~v~P~~~~l~~~e~~l~~~~~~L~~~----~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~ 816 (1650)
.+.+-+++.|.+.--+....+++....+...++... ..+..+-...++.++.++.....+...++..++..+.
T Consensus 6 LLRK~aE~~KqL~~~~q~~~e~e~~k~eL~~~~~~~~~~~~~k~~eq~~~le~lk~eL~~~~~el~~lq~~l~~~~~ 82 (107)
T 2no2_A 6 LLRKNAEVTKQVSMARQAQVDLEREKKELEDSLERISDQGQRKTQEQLEVLESLKQELATSQRELQVLQGSLETSAQ 82 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666555555444444444444444332 2233444455556666666655555556555555443
No 411
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=27.31 E-value=71 Score=35.36 Aligned_cols=59 Identities=15% Similarity=0.126 Sum_probs=28.8
Q ss_pred chhhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4724 740 FQVLAMEVYDRVIKIVGPKKAKLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKS 801 (1650)
Q Consensus 740 ~Wv~A~~~Y~~v~~~v~P~~~~l~~~e~~l~~~~~~L~~~~~~l~~~~~~l~~l~~~~~~~~ 801 (1650)
...-|+++|.+-...... ..++.-++.+...++++.+++++++++.+|++|+.+..+..
T Consensus 124 ~iLSalINF~~FRE~~~~---~~~e~~~~~e~~~~~i~ql~~En~~le~~Ie~Lk~e~~e~~ 182 (250)
T 2ve7_C 124 RFLSGIINFIHFREACRE---TYMEFLWQYKSSADKMQQLNAAHQEALMKLERLEKEVDEDT 182 (250)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHHHHHHHTTHHHHHHHHHHHHHHHHHHSCC----------
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 456678888776544332 34444455555555666666666666666666666555444
No 412
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=27.25 E-value=23 Score=36.93 Aligned_cols=33 Identities=6% Similarity=0.058 Sum_probs=22.5
Q ss_pred ceEEEecCCchhhhHHHHHH-Hhc--CCceEEEEEc
Q psy4724 77 HAMLITIGGSGAAEVTKLAT-FMN--EYVLFEIEIL 109 (1650)
Q Consensus 77 ~alLvGvgGSGrqSLtrLAa-fi~--~~~~fqIeit 109 (1650)
...+||..||||.||+++-+ +.. |+..=+|.+.
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~d 39 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRH 39 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC-
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEc
Confidence 35699999999999987644 443 3446666554
No 413
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=27.24 E-value=56 Score=35.43 Aligned_cols=32 Identities=13% Similarity=0.164 Sum_probs=23.8
Q ss_pred HHHHHh--cCCCC-ceEEEecCCchhhhHHHHHHH
Q psy4724 66 RLCRIL--QQPKG-HAMLITIGGSGAAEVTKLATF 97 (1650)
Q Consensus 66 rI~Ril--~~p~G-~alLvGvgGSGrqSLtrLAaf 97 (1650)
.+-++| ..|+| -.+|+|..||||.+|++..+.
T Consensus 12 ~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 12 ELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp HHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHH
Confidence 344555 24556 578999999999999987665
No 414
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=27.06 E-value=2.4e+02 Score=22.90 Aligned_cols=30 Identities=10% Similarity=0.288 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4724 782 QLATVLGKLQALRDELAQKSKDKKELEDQI 811 (1650)
Q Consensus 782 ~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~ 811 (1650)
++..+.++-..|.+.+.++..+...|..++
T Consensus 17 ~l~~L~~rN~rL~~~L~~AR~el~~Lkeel 46 (51)
T 3m91_A 17 RIDSLAARNSKLMETLKEARQQLLALREEV 46 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444444444444444443
No 415
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=27.02 E-value=27 Score=36.33 Aligned_cols=20 Identities=20% Similarity=0.021 Sum_probs=17.1
Q ss_pred CceEEEecCCchhhhHHHHH
Q psy4724 76 GHAMLITIGGSGAAEVTKLA 95 (1650)
Q Consensus 76 G~alLvGvgGSGrqSLtrLA 95 (1650)
=+.++||.+|+||.||.+..
T Consensus 15 ~ki~vvG~~~~GKssL~~~l 34 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWI 34 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 46899999999999998644
No 416
>3n40_P P62 envelope glycoprotein; viral protein, immature heterodimer, alphavirus, receptor BI membrane fusion; HET: NAG NDG; 2.17A {Chikungunya virus} PDB: 3n44_B* 3n41_B* 3n42_B* 3n43_B* 2xfb_B 3n44_A* 3n41_A* 3n42_A* 3n43_A*
Probab=26.99 E-value=20 Score=41.08 Aligned_cols=39 Identities=15% Similarity=0.284 Sum_probs=19.5
Q ss_pred ecCCeeEEEEeCC--CCCCCCcccccceEEEEeeeChhhHH
Q psy4724 1017 YNIKFRLYITTRL--KNPHYIPEILTKITLINFMITPQGLQ 1055 (1650)
Q Consensus 1017 ~~~~FrL~l~Tk~--~np~~~pe~~~~~tvinf~vt~~gLe 1055 (1650)
.+|+---+|+||. .+|++..|.-+.-+..||+||.+|+|
T Consensus 347 Lhp~hPTLLTtR~LG~~p~~t~EWI~~~~~rnf~V~~eG~E 387 (401)
T 3n40_P 347 LYPDHPTLLSYRNMGEEPNYQEEWVMHKKEVVLTVPTEGLE 387 (401)
T ss_dssp ECCSSCEEEEEEESSSCCCCEEEEECSCEEEEEECCTTCEE
T ss_pred ecCCCCceEEEeccCCCCCCcceeeecceEEEEEeCCCceE
Confidence 3444445555543 34555555555555555555555543
No 417
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=26.92 E-value=51 Score=39.15 Aligned_cols=48 Identities=13% Similarity=0.137 Sum_probs=39.7
Q ss_pred ceeehHHHHHHHHHHHHHhcCCCCceEEEecCCchhhhHHHHHHHhcC
Q psy4724 53 DIVTFLYIIQHISRLCRILQQPKGHAMLITIGGSGAAEVTKLATFMNE 100 (1650)
Q Consensus 53 ~lVlF~~ai~Hv~rI~Ril~~p~G~alLvGvgGSGrqSLtrLAafi~~ 100 (1650)
+++.-..++.++.+..+-+..+..+.|+.|..|+||..++|.....++
T Consensus 138 ~~ig~s~~m~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lAr~ih~~s~ 185 (387)
T 1ny5_A 138 EYVFESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKLSD 185 (387)
T ss_dssp CCCCCSHHHHHHHHHHHHHTTCCSCEEEECSTTSSHHHHHHHHHHHST
T ss_pred hhhhccHHhhHHHHHHHHhcCCCCCeEEecCCCcCHHHHHHHHHHhcC
Confidence 355556789999888888888899999999999999999987666543
No 418
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=26.91 E-value=2.4e+02 Score=27.80 Aligned_cols=27 Identities=19% Similarity=0.222 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4724 796 ELAQKSKDKKELEDQIELCKQKLERAE 822 (1650)
Q Consensus 796 ~~~~~~~e~~~l~~~~~~~~~rl~ra~ 822 (1650)
+|.+..+..+.+..++......++.|.
T Consensus 101 ~Yak~~a~~~q~~~d~~~~~~~~~kA~ 127 (158)
T 3tul_A 101 GYAQAEAAVEQAGKEATEAKEALDKAT 127 (158)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555666666655555555544
No 419
>3j0c_B E2 envelope glycoprotein; alphavirus, bioweapon; 4.80A {Venezuelan equine encephalitis virus}
Probab=26.89 E-value=20 Score=41.34 Aligned_cols=43 Identities=28% Similarity=0.539 Sum_probs=37.0
Q ss_pred eeeeecCCeeEEEEeCC--CCCCCCcccccceEEEEeeeChhhHH
Q psy4724 1013 KEIEYNIKFRLYITTRL--KNPHYIPEILTKITLINFMITPQGLQ 1055 (1650)
Q Consensus 1013 ~~i~~~~~FrL~l~Tk~--~np~~~pe~~~~~tvinf~vt~~gLe 1055 (1650)
-.+..+|+---+|+||. .+|++..|.-+.-+..||+||.+|+|
T Consensus 283 vtL~Lhp~hPTLLTtR~LG~~p~~t~EWI~~~~~rnf~V~~eG~E 327 (423)
T 3j0c_B 283 VSLKLHPKNPTYLITRQLADEPHYTHELISEPAVRNFTVTEKGWE 327 (423)
T ss_dssp EEEEECCSSCEEEEEEESSSCCCCEEEEECSCEEEEEECCTTCEE
T ss_pred EEEEecCCCCceEEEeccCCCCCCcceeeecceEEEEEECCcceE
Confidence 34566888888999985 68999999999999999999999986
No 420
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=26.86 E-value=3.5e+02 Score=24.37 Aligned_cols=72 Identities=21% Similarity=0.231 Sum_probs=33.2
Q ss_pred cchHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4724 755 VGPKKAKLAEAEADYAVQMEKLN----SKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKLERAEKLIG 826 (1650)
Q Consensus 755 v~P~~~~l~~~e~~l~~~~~~L~----~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~~Li~ 826 (1650)
+.-++.....++..+..++..+. ..+..+..+++.++.++.+.+...++.+.|-+-.-....-+..-.+|+.
T Consensus 5 ie~L~~q~~~Le~~l~e~E~~~~~~l~~~q~~i~~lE~el~~~r~e~~~ql~EYq~LlnvK~~Le~EIatYRkLLE 80 (86)
T 1x8y_A 5 LSQLQCQLAAKEAKLRDLEDSLARERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLLE 80 (86)
T ss_dssp -------CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHc
Confidence 34445555566777777766543 2344444555555555555555555544444333333334444444544
No 421
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=26.77 E-value=29 Score=41.01 Aligned_cols=38 Identities=16% Similarity=0.134 Sum_probs=27.2
Q ss_pred cCCCC-ceEEEecCCchhhhHHHHHHHhcCCceEEEEEc
Q psy4724 72 QQPKG-HAMLITIGGSGAAEVTKLATFMNEYVLFEIEIL 109 (1650)
Q Consensus 72 ~~p~G-~alLvGvgGSGrqSLtrLAafi~~~~~fqIeit 109 (1650)
..+.| -..|+|..||||.||.|+-+=+..-+-=+|.+.
T Consensus 33 ~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~ 71 (372)
T 1v43_A 33 TIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFG 71 (372)
T ss_dssp EECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEET
T ss_pred EECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEEC
Confidence 44555 566999999999999998776654444455443
No 422
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=26.74 E-value=57 Score=37.90 Aligned_cols=23 Identities=22% Similarity=0.302 Sum_probs=18.2
Q ss_pred ceEEEecCCchhhhHHH-HHHHhc
Q psy4724 77 HAMLITIGGSGAAEVTK-LATFMN 99 (1650)
Q Consensus 77 ~alLvGvgGSGrqSLtr-LAafi~ 99 (1650)
-..++|+.||||.+|++ ||..+.
T Consensus 9 lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred eEEEECCCcCcHHHHHHHHHHHcC
Confidence 36799999999999984 666543
No 423
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=26.69 E-value=3.7e+02 Score=24.53 Aligned_cols=68 Identities=18% Similarity=0.150 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhccHHHHHHHHH
Q psy4724 764 EAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKLERAEKLIGGLGGEKTRWSEASANLS 843 (1650)
Q Consensus 764 ~~e~~l~~~~~~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~~Li~~L~~E~~rW~~~~~~~~ 843 (1650)
-++.+|..+++.|...+.+.......+..|++.++.-...-++-+. -+.-|.+|...|...+.+..
T Consensus 22 lLq~qLT~Aq~~l~~~eaQAaTCNqTV~tL~~SL~kekaq~q~qq~--------------~v~elqgEI~~Lnq~Lqda~ 87 (99)
T 3ni0_A 22 LLQRQLTRTQDSLLQAETQANSCNLTVVTLQESLEKKVSQALEQQA--------------RIKELENEVTKLNQELENLR 87 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH--------------HHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777777777777777777776665444332222 24556677778887777665
Q ss_pred HH
Q psy4724 844 KA 845 (1650)
Q Consensus 844 ~~ 845 (1650)
.+
T Consensus 88 ~~ 89 (99)
T 3ni0_A 88 IQ 89 (99)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 424
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=26.61 E-value=2.3e+02 Score=22.61 Aligned_cols=40 Identities=23% Similarity=0.194 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4724 787 LGKLQALRDELAQKSKDKKELEDQIELCKQKLERAEKLIG 826 (1650)
Q Consensus 787 ~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~~Li~ 826 (1650)
+.+|..|+..++...++...|+..-...+...+|-.+|+.
T Consensus 3 eq~l~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~~LLk 42 (48)
T 3vmx_A 3 ERQILRLKQINIQLATKIQHLEFSCSEKEQEIERLNKLLK 42 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHH
Confidence 4567777777777777777787777777777777777764
No 425
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=26.61 E-value=1.4e+02 Score=22.21 Aligned_cols=27 Identities=19% Similarity=0.313 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4724 781 AQLATVLGKLQALRDELAQKSKDKKEL 807 (1650)
Q Consensus 781 ~~l~~~~~~l~~l~~~~~~~~~e~~~l 807 (1650)
..|.++.++|..|+.+++....||.+|
T Consensus 8 mTLeEtkeQi~~l~~kl~~LkeEKHQL 34 (38)
T 2l5g_A 8 MSLEETKEQILKLEEKLLALQEEKHQL 34 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666666666655
No 426
>2yew_C E2 envelope glycoprotein; alphavirus, molecular dynamics; 5.00A {Barmah forest virus}
Probab=26.46 E-value=18 Score=41.65 Aligned_cols=44 Identities=14% Similarity=0.262 Sum_probs=37.7
Q ss_pred CeeeeecCCeeEEEEeCC--CCCCCCcccccceEEEEeeeChhhHH
Q psy4724 1012 NKEIEYNIKFRLYITTRL--KNPHYIPEILTKITLINFMITPQGLQ 1055 (1650)
Q Consensus 1012 ~~~i~~~~~FrL~l~Tk~--~np~~~pe~~~~~tvinf~vt~~gLe 1055 (1650)
+-.+-.+|+---+|+||. ..|+++.|.-+.-+..||+||.+|+|
T Consensus 280 ~v~L~lhp~hPTLLTtR~LG~~p~~t~EWI~~~~~rnf~V~~eG~E 325 (421)
T 2yew_C 280 EVEFHFHPMYPTLFSIRSLGKDPSHSQEWIDTPMSKTIQVGAEGVE 325 (421)
T ss_dssp EEEEEECCCSCEEEEEECSSSSCCEEEEEECSCEEEEECCCSSCEE
T ss_pred eEEEEecCCCCceEEEeccCCCCCCcceeeecceEEEEEeCCCceE
Confidence 344567888889999996 57999999999999999999999986
No 427
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=26.31 E-value=3.3e+02 Score=23.88 Aligned_cols=54 Identities=19% Similarity=0.219 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4724 773 MEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKLERAEKLIG 826 (1650)
Q Consensus 773 ~~~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~~Li~ 826 (1650)
..+.+..+..+..+++.++.++.+.+...++.+.|-+-.-.....+..-.+|+.
T Consensus 4 ~~e~~~~~~~i~~lE~eL~~~r~e~~~ql~EYq~LlniKl~Le~EIatYRkLLE 57 (74)
T 2xv5_A 4 ARERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLLE 57 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345566677777888888888888877777777666555555555555556655
No 428
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=26.27 E-value=31 Score=36.18 Aligned_cols=21 Identities=24% Similarity=0.240 Sum_probs=17.6
Q ss_pred ceEEEecCCchhhhHHHHHHH
Q psy4724 77 HAMLITIGGSGAAEVTKLATF 97 (1650)
Q Consensus 77 ~alLvGvgGSGrqSLtrLAaf 97 (1650)
...|||..||||.||.+.-+-
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~ 51 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTR 51 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 468999999999999876554
No 429
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=26.11 E-value=4e+02 Score=24.70 Aligned_cols=20 Identities=5% Similarity=0.112 Sum_probs=7.5
Q ss_pred HHHHHHhcchHHHHHHHHHH
Q psy4724 748 YDRVIKIVGPKKAKLAEAEA 767 (1650)
Q Consensus 748 Y~~v~~~v~P~~~~l~~~e~ 767 (1650)
|......+.-...++..++.
T Consensus 10 f~~lq~~~~~l~~q~~~l~~ 29 (107)
T 1fxk_A 10 FQQLQQQAQAISVQKQTVEM 29 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44433333333333333333
No 430
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=26.08 E-value=26 Score=35.29 Aligned_cols=17 Identities=18% Similarity=0.487 Sum_probs=15.2
Q ss_pred ceEEEecCCchhhhHHH
Q psy4724 77 HAMLITIGGSGAAEVTK 93 (1650)
Q Consensus 77 ~alLvGvgGSGrqSLtr 93 (1650)
+.+++|.+|+||.||.+
T Consensus 4 ki~~vG~~~~GKSsli~ 20 (166)
T 3q72_A 4 KVLLLGAPGVGKSALAR 20 (166)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999999975
No 431
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=26.06 E-value=25 Score=36.00 Aligned_cols=20 Identities=10% Similarity=0.190 Sum_probs=17.0
Q ss_pred CCCceEEEecCCchhhhHHH
Q psy4724 74 PKGHAMLITIGGSGAAEVTK 93 (1650)
Q Consensus 74 p~G~alLvGvgGSGrqSLtr 93 (1650)
+.-+.+++|..|+||.||.+
T Consensus 7 ~~~~i~v~G~~~~GKSsli~ 26 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMH 26 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHH
Confidence 34578999999999999974
No 432
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=26.05 E-value=2e+02 Score=23.98 Aligned_cols=50 Identities=18% Similarity=0.162 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4724 777 NSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKLERAEKLIG 826 (1650)
Q Consensus 777 ~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~~Li~ 826 (1650)
...+..+..+++.++.++.+.+...++.+.|-+-.-.....+..-.+|+.
T Consensus 3 ~~~q~~i~~le~el~~~r~e~~~q~~eYq~LlniK~~Le~EIatYRkLLE 52 (59)
T 1gk6_A 3 KQLEDKVEELLSKNYHLENEVARLKKLVGDLLNVKMALDIEIATYRKLLE 52 (59)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHc
Confidence 34566677777777777777777766666665544444555555555555
No 433
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=25.98 E-value=26 Score=41.30 Aligned_cols=24 Identities=8% Similarity=0.058 Sum_probs=20.3
Q ss_pred CCceEEEecCCchhhhHHHHHHHh
Q psy4724 75 KGHAMLITIGGSGAAEVTKLATFM 98 (1650)
Q Consensus 75 ~G~alLvGvgGSGrqSLtrLAafi 98 (1650)
+....|||..||||.||.|+-+=+
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHHH
Confidence 457889999999999999976554
No 434
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=25.95 E-value=31 Score=40.87 Aligned_cols=37 Identities=11% Similarity=0.225 Sum_probs=26.7
Q ss_pred cCCCC-ceEEEecCCchhhhHHHHHHHhcCCceEEEEE
Q psy4724 72 QQPKG-HAMLITIGGSGAAEVTKLATFMNEYVLFEIEI 108 (1650)
Q Consensus 72 ~~p~G-~alLvGvgGSGrqSLtrLAafi~~~~~fqIei 108 (1650)
..+.| -.-|+|..||||.||.|+-+=+..-+-=+|.+
T Consensus 25 ~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i 62 (381)
T 3rlf_A 25 DIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFI 62 (381)
T ss_dssp EECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEE
T ss_pred EECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEE
Confidence 34455 56699999999999999877665544445544
No 435
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=25.92 E-value=33 Score=43.26 Aligned_cols=37 Identities=24% Similarity=0.310 Sum_probs=25.5
Q ss_pred cCCCC-ceEEEecCCchhhhHHHHHHHhcCCceEEEEE
Q psy4724 72 QQPKG-HAMLITIGGSGAAEVTKLATFMNEYVLFEIEI 108 (1650)
Q Consensus 72 ~~p~G-~alLvGvgGSGrqSLtrLAafi~~~~~fqIei 108 (1650)
.-+.| ...|||..||||.||.++-+=+..-+-=+|.+
T Consensus 365 ~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~ 402 (582)
T 3b5x_A 365 SIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICL 402 (582)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEE
Confidence 44555 77799999999999999976554333334443
No 436
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=25.81 E-value=4.2e+02 Score=24.86 Aligned_cols=33 Identities=9% Similarity=0.206 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4724 761 KLAEAEADYAVQMEKLNSKRAQLATVLGKLQAL 793 (1650)
Q Consensus 761 ~l~~~e~~l~~~~~~L~~~~~~l~~~~~~l~~l 793 (1650)
++.++...+..........+.++..++..+..+
T Consensus 11 ~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l 43 (112)
T 1l8d_A 11 KKTTIEEERNEITQRIGELKNKIGDLKTAIEEL 43 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444444444444444444444444
No 437
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=25.79 E-value=2.6e+02 Score=22.68 Aligned_cols=38 Identities=21% Similarity=0.217 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4724 761 KLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELA 798 (1650)
Q Consensus 761 ~l~~~e~~l~~~~~~L~~~~~~l~~~~~~l~~l~~~~~ 798 (1650)
++.+++.++....++-....+.|.+..++|..|+.+++
T Consensus 10 r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele 47 (51)
T 3m91_A 10 DIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVD 47 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444433333334444444444444444443
No 438
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=25.75 E-value=3.2e+02 Score=23.46 Aligned_cols=51 Identities=14% Similarity=0.126 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4724 768 DYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKL 818 (1650)
Q Consensus 768 ~l~~~~~~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl 818 (1650)
.+...+++|..+..++..+++.++--.+.++....|.-.+.-+-...+.||
T Consensus 19 ~l~~Lr~eL~~Ke~eI~~L~e~i~lk~kd~ErLNDEiislNIENNlL~~rl 69 (75)
T 3a7o_A 19 TLAILQKELKSKEQEIRRLKEVIALKNKNTERLNDELISGTIENNVLQQKL 69 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHhhHHHHHhHHHHHHHHHHH
Confidence 445555556666666666666665555555555555555555555555554
No 439
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=25.62 E-value=26 Score=35.38 Aligned_cols=18 Identities=17% Similarity=0.196 Sum_probs=15.9
Q ss_pred ceEEEecCCchhhhHHHH
Q psy4724 77 HAMLITIGGSGAAEVTKL 94 (1650)
Q Consensus 77 ~alLvGvgGSGrqSLtrL 94 (1650)
+.+++|..|+||.||.+-
T Consensus 8 ~i~v~G~~~~GKSsli~~ 25 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWR 25 (170)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHH
Confidence 689999999999999754
No 440
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=25.59 E-value=4.3e+02 Score=24.88 Aligned_cols=53 Identities=25% Similarity=0.255 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy4724 775 KLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKLERAEKLIGG 827 (1650)
Q Consensus 775 ~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~~Li~~ 827 (1650)
.+...+++|....+++++|+.+..+.....+.++.+.+=.=.||...+-|+..
T Consensus 5 s~~al~~eL~~~~~ei~~L~~ei~eLk~~ve~lEkERDFYF~KLRdIEiLcQe 57 (106)
T 4e61_A 5 SLVAIQAELTKSQETIGSLNEEIEQYKGTVSTLEIEREFYFNKLRDIEILVHT 57 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556667777777777777777777777777777777666777777766664
No 441
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=25.55 E-value=36 Score=35.29 Aligned_cols=24 Identities=13% Similarity=0.340 Sum_probs=20.1
Q ss_pred Hhc-CCCCceEEEecCCchhhhHHH
Q psy4724 70 ILQ-QPKGHAMLITIGGSGAAEVTK 93 (1650)
Q Consensus 70 il~-~p~G~alLvGvgGSGrqSLtr 93 (1650)
.+. .+.-+.+++|..|+||.||..
T Consensus 16 ~f~~~~~~~i~v~G~~~~GKssli~ 40 (189)
T 2x77_A 16 LLPADRKIRVLMLGLDNAGKTSILY 40 (189)
T ss_dssp TSCTTSCEEEEEEEETTSSHHHHHH
T ss_pred hccCCCceEEEEECCCCCCHHHHHH
Confidence 444 667799999999999999965
No 442
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=25.45 E-value=22 Score=42.88 Aligned_cols=19 Identities=11% Similarity=0.216 Sum_probs=16.0
Q ss_pred ceEEEecCCchhhhHHHHH
Q psy4724 77 HAMLITIGGSGAAEVTKLA 95 (1650)
Q Consensus 77 ~alLvGvgGSGrqSLtrLA 95 (1650)
-.+|+|+.||||.|++|.-
T Consensus 260 lIil~G~pGSGKSTla~~L 278 (416)
T 3zvl_A 260 VVVAVGFPGAGKSTFIQEH 278 (416)
T ss_dssp EEEEESCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 3568999999999999863
No 443
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=25.43 E-value=27 Score=35.37 Aligned_cols=17 Identities=18% Similarity=0.399 Sum_probs=15.3
Q ss_pred ceEEEecCCchhhhHHH
Q psy4724 77 HAMLITIGGSGAAEVTK 93 (1650)
Q Consensus 77 ~alLvGvgGSGrqSLtr 93 (1650)
+.+++|.+|+||.||.+
T Consensus 5 ~i~v~G~~~~GKssli~ 21 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVL 21 (172)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 57899999999999974
No 444
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=25.41 E-value=25 Score=35.48 Aligned_cols=20 Identities=20% Similarity=0.341 Sum_probs=16.6
Q ss_pred CCceEEEecCCchhhhHHHH
Q psy4724 75 KGHAMLITIGGSGAAEVTKL 94 (1650)
Q Consensus 75 ~G~alLvGvgGSGrqSLtrL 94 (1650)
.=+.+++|..|+||.||.+-
T Consensus 3 ~~ki~v~G~~~~GKssli~~ 22 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQ 22 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHH
Confidence 34689999999999999543
No 445
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=25.27 E-value=1.9e+02 Score=31.21 Aligned_cols=45 Identities=22% Similarity=0.252 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4724 759 KAKLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKD 803 (1650)
Q Consensus 759 ~~~l~~~e~~l~~~~~~L~~~~~~l~~~~~~l~~l~~~~~~~~~e 803 (1650)
+.++..++.+++.++++.+..++.++++...++++++.|+...-|
T Consensus 177 K~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (228)
T 3q0x_A 177 KGTCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLREQYDKHLLE 221 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhee
Confidence 468888888888888888888899999999999999998876544
No 446
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=25.24 E-value=27 Score=36.37 Aligned_cols=19 Identities=21% Similarity=0.354 Sum_probs=16.2
Q ss_pred CceEEEecCCchhhhHHHH
Q psy4724 76 GHAMLITIGGSGAAEVTKL 94 (1650)
Q Consensus 76 G~alLvGvgGSGrqSLtrL 94 (1650)
=+.+++|.+|+||.||..-
T Consensus 22 ~ki~vvG~~~~GKSsli~~ 40 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQ 40 (190)
T ss_dssp EEEEEECSTTSSHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHH
Confidence 3689999999999999643
No 447
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=25.18 E-value=28 Score=36.01 Aligned_cols=17 Identities=6% Similarity=0.104 Sum_probs=15.2
Q ss_pred ceEEEecCCchhhhHHH
Q psy4724 77 HAMLITIGGSGAAEVTK 93 (1650)
Q Consensus 77 ~alLvGvgGSGrqSLtr 93 (1650)
+.+++|.+|+||.||..
T Consensus 3 ki~v~G~~~~GKSsli~ 19 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIY 19 (190)
T ss_dssp EEEEEEBTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 57899999999999975
No 448
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=25.07 E-value=28 Score=36.28 Aligned_cols=23 Identities=17% Similarity=0.218 Sum_probs=18.6
Q ss_pred CCCceEEEecCCchhhhHH-HHHH
Q psy4724 74 PKGHAMLITIGGSGAAEVT-KLAT 96 (1650)
Q Consensus 74 p~G~alLvGvgGSGrqSLt-rLAa 96 (1650)
+.=+.++||.+|+||.||. ||..
T Consensus 19 ~~~ki~ivG~~~vGKSsL~~~~~~ 42 (184)
T 3ihw_A 19 PELKVGIVGNLSSGKSALVHRYLT 42 (184)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeeEEEEECCCCCCHHHHHHHHhc
Confidence 4447899999999999998 5553
No 449
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=25.06 E-value=1.2e+02 Score=22.62 Aligned_cols=23 Identities=30% Similarity=0.453 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy4724 775 KLNSKRAQLATVLGKLQALRDEL 797 (1650)
Q Consensus 775 ~L~~~~~~l~~~~~~l~~l~~~~ 797 (1650)
+|+..+.+++.++.+++.|+..+
T Consensus 21 elaaleselqalekklaalkskl 43 (48)
T 1g6u_A 21 ELAALESELQALEKKLAALKSKL 43 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444433
No 450
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=25.01 E-value=26 Score=41.20 Aligned_cols=37 Identities=11% Similarity=0.128 Sum_probs=26.1
Q ss_pred cCCCC-ceEEEecCCchhhhHHHHHHHhcCCceEEEEE
Q psy4724 72 QQPKG-HAMLITIGGSGAAEVTKLATFMNEYVLFEIEI 108 (1650)
Q Consensus 72 ~~p~G-~alLvGvgGSGrqSLtrLAafi~~~~~fqIei 108 (1650)
.-+.| -..|+|..||||.||.|+-+=+...+-=+|.+
T Consensus 27 ~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i 64 (353)
T 1oxx_K 27 NIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYF 64 (353)
T ss_dssp EECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEE
T ss_pred EECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEE
Confidence 34555 56699999999999999877554444444544
No 451
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=24.98 E-value=31 Score=36.37 Aligned_cols=22 Identities=23% Similarity=0.196 Sum_probs=18.1
Q ss_pred ceEEEecCCchhhhHHHHHHHh
Q psy4724 77 HAMLITIGGSGAAEVTKLATFM 98 (1650)
Q Consensus 77 ~alLvGvgGSGrqSLtrLAafi 98 (1650)
...|||..|+||.||.+.-+..
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5789999999999998765543
No 452
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=24.88 E-value=40 Score=38.05 Aligned_cols=26 Identities=23% Similarity=0.144 Sum_probs=19.9
Q ss_pred ceEEEecCCchhhhHHHHHHHhcCCce
Q psy4724 77 HAMLITIGGSGAAEVTKLATFMNEYVL 103 (1650)
Q Consensus 77 ~alLvGvgGSGrqSLtrLAafi~~~~~ 103 (1650)
...|+|..||||.|+++.-+- .|+.+
T Consensus 77 iI~I~G~~GSGKSTva~~La~-lg~~~ 102 (281)
T 2f6r_A 77 VLGLTGISGSGKSSVAQRLKN-LGAYI 102 (281)
T ss_dssp EEEEEECTTSCHHHHHHHHHH-HTCEE
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcE
Confidence 367899999999999987763 35443
No 453
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=24.86 E-value=28 Score=35.05 Aligned_cols=18 Identities=6% Similarity=0.302 Sum_probs=15.4
Q ss_pred ceEEEecCCchhhhHHHH
Q psy4724 77 HAMLITIGGSGAAEVTKL 94 (1650)
Q Consensus 77 ~alLvGvgGSGrqSLtrL 94 (1650)
+.+++|.+|+||.||..-
T Consensus 2 ki~~~G~~~~GKssl~~~ 19 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYK 19 (164)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 468999999999999653
No 454
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=24.86 E-value=29 Score=35.07 Aligned_cols=18 Identities=22% Similarity=0.235 Sum_probs=15.5
Q ss_pred ceEEEecCCchhhhHHHH
Q psy4724 77 HAMLITIGGSGAAEVTKL 94 (1650)
Q Consensus 77 ~alLvGvgGSGrqSLtrL 94 (1650)
+.+++|..|+||.||.+-
T Consensus 5 ~i~v~G~~~~GKssli~~ 22 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVR 22 (170)
T ss_dssp EEEEEESTTSSHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHH
Confidence 578999999999999653
No 455
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=24.82 E-value=3.3e+02 Score=31.40 Aligned_cols=30 Identities=3% Similarity=-0.056 Sum_probs=11.4
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4724 755 VGPKKAKLAEAEADYAVQMEKLNSKRAQLA 784 (1650)
Q Consensus 755 v~P~~~~l~~~e~~l~~~~~~L~~~~~~l~ 784 (1650)
|.-++..|+...+.............+.++
T Consensus 69 Ie~L~~~L~~~s~s~~~~~~y~~~~~~~lk 98 (390)
T 1deq_A 69 INKLRDSLFNYQKNSKDSNTLTKNIVELMR 98 (390)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 333344444444433333333333333333
No 456
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=24.76 E-value=3.1e+02 Score=32.45 Aligned_cols=24 Identities=25% Similarity=0.491 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy4724 788 GKLQALRDELAQKSKDKKELEDQI 811 (1650)
Q Consensus 788 ~~l~~l~~~~~~~~~e~~~l~~~~ 811 (1650)
.+|..||..++....++++||..+
T Consensus 132 ~~IrvLq~~l~~q~skIQRLE~dI 155 (491)
T 1m1j_A 132 NRIKALQNSIQEQVVEMKRLEVDI 155 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555444
No 457
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=24.74 E-value=1.1e+02 Score=30.09 Aligned_cols=82 Identities=15% Similarity=0.200 Sum_probs=42.5
Q ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHH
Q psy4724 748 YDRVIKIVGPKKAKLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDEL--------AQKSKDKKELEDQIELCKQKLE 819 (1650)
Q Consensus 748 Y~~v~~~v~P~~~~l~~~e~~l~~~~~~L~~~~~~l~~~~~~l~~l~~~~--------~~~~~e~~~l~~~~~~~~~rl~ 819 (1650)
|......+.-...++..+...+......-...+.....++..|+.|.+.+ ..+..+...++......+.++.
T Consensus 34 l~~l~~~l~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~ 113 (135)
T 2e7s_A 34 YNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNLVADARMEKYAIEILNKRLTEQLR 113 (135)
T ss_dssp HHHHHHHTTTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44434444444445555555555554444455555555555555555443 3344455666666666666666
Q ss_pred HHHHHHhhhc
Q psy4724 820 RAEKLIGGLG 829 (1650)
Q Consensus 820 ra~~Li~~L~ 829 (1650)
-++.++..|.
T Consensus 114 e~e~ll~~lq 123 (135)
T 2e7s_A 114 EKDMLLDTLT 123 (135)
T ss_dssp HHHHCC----
T ss_pred HHHHHHHHHH
Confidence 6666666653
No 458
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=24.65 E-value=34 Score=34.95 Aligned_cols=21 Identities=5% Similarity=-0.005 Sum_probs=17.7
Q ss_pred CCCceEEEecCCchhhhHHHH
Q psy4724 74 PKGHAMLITIGGSGAAEVTKL 94 (1650)
Q Consensus 74 p~G~alLvGvgGSGrqSLtrL 94 (1650)
..-+.+++|..|+||.||.+-
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~ 27 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDA 27 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 456899999999999999753
No 459
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=24.64 E-value=48 Score=36.16 Aligned_cols=26 Identities=15% Similarity=0.130 Sum_probs=20.6
Q ss_pred ceEEEecCCchhhhHHHHHHHhcCCc
Q psy4724 77 HAMLITIGGSGAAEVTKLATFMNEYV 102 (1650)
Q Consensus 77 ~alLvGvgGSGrqSLtrLAafi~~~~ 102 (1650)
...|+|..||||.|++++.+-..|+.
T Consensus 18 ~i~i~G~~gsGKst~~~~l~~~lg~~ 43 (236)
T 1q3t_A 18 QIAIDGPASSGKSTVAKIIAKDFGFT 43 (236)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHHCCE
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCc
Confidence 57799999999999998766544543
No 460
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=24.48 E-value=35 Score=41.01 Aligned_cols=26 Identities=12% Similarity=0.161 Sum_probs=20.1
Q ss_pred hcCCCCc---eEEEecCCchhhhHHHHHH
Q psy4724 71 LQQPKGH---AMLITIGGSGAAEVTKLAT 96 (1650)
Q Consensus 71 l~~p~G~---alLvGvgGSGrqSLtrLAa 96 (1650)
+..+.|- ..|||..||||.||.++-+
T Consensus 35 l~i~~Gei~~vaLvG~nGaGKSTLln~L~ 63 (427)
T 2qag_B 35 KSVSQGFCFNILCVGETGLGKSTLMDTLF 63 (427)
T ss_dssp HSCC-CCEEEEEEECSTTSSSHHHHHHHH
T ss_pred eEecCCCeeEEEEECCCCCCHHHHHHHHh
Confidence 3455665 6899999999999998754
No 461
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=24.46 E-value=4e+02 Score=24.24 Aligned_cols=55 Identities=13% Similarity=0.131 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4724 760 AKLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELC 814 (1650)
Q Consensus 760 ~~l~~~e~~l~~~~~~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~ 814 (1650)
+++.+.++++++...-+..--+++-+-.++|+.|.+.-+....+....+......
T Consensus 5 d~l~~vq~ev~evk~iM~~NI~kvL~RgekL~~L~~kt~~L~~~s~~F~~~A~~l 59 (91)
T 3hd7_A 5 RRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKL 59 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666777777666666666666666666666666665555554444444333
No 462
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=24.45 E-value=24 Score=36.25 Aligned_cols=22 Identities=14% Similarity=0.107 Sum_probs=18.2
Q ss_pred CCCCceEEEecCCchhhhHHHH
Q psy4724 73 QPKGHAMLITIGGSGAAEVTKL 94 (1650)
Q Consensus 73 ~p~G~alLvGvgGSGrqSLtrL 94 (1650)
++.-+.+++|.+|+||.||.+-
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~ 26 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHR 26 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHH
Confidence 3556899999999999999653
No 463
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=24.29 E-value=35 Score=40.16 Aligned_cols=39 Identities=15% Similarity=0.227 Sum_probs=29.0
Q ss_pred hcCCCC-ceEEEecCCchhhhHHHHHHHhcCCceEEEEEc
Q psy4724 71 LQQPKG-HAMLITIGGSGAAEVTKLATFMNEYVLFEIEIL 109 (1650)
Q Consensus 71 l~~p~G-~alLvGvgGSGrqSLtrLAafi~~~~~fqIeit 109 (1650)
|.-+.| -.-|||..||||.||.|+-+-+..-+-=+|.+.
T Consensus 49 l~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~ 88 (366)
T 3tui_C 49 LHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVD 88 (366)
T ss_dssp EEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEET
T ss_pred EEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEEC
Confidence 455666 556999999999999999887765555555553
No 464
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=24.21 E-value=37 Score=38.22 Aligned_cols=24 Identities=21% Similarity=0.329 Sum_probs=19.4
Q ss_pred CCC-ceEEEecCCchhhhHHHHHHH
Q psy4724 74 PKG-HAMLITIGGSGAAEVTKLATF 97 (1650)
Q Consensus 74 p~G-~alLvGvgGSGrqSLtrLAaf 97 (1650)
|+| -.+|+|.+||||.+|++..+.
T Consensus 28 ~~G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 28 VAGTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 445 678999999999999876553
No 465
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=24.21 E-value=35 Score=35.37 Aligned_cols=20 Identities=15% Similarity=0.312 Sum_probs=17.0
Q ss_pred CCceEEEecCCchhhhHHHH
Q psy4724 75 KGHAMLITIGGSGAAEVTKL 94 (1650)
Q Consensus 75 ~G~alLvGvgGSGrqSLtrL 94 (1650)
.-+.+++|..|+||.||..-
T Consensus 23 ~~~i~v~G~~~~GKSsli~~ 42 (195)
T 3pqc_A 23 KGEVAFVGRSNVGKSSLLNA 42 (195)
T ss_dssp TCEEEEEEBTTSSHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 44799999999999999753
No 466
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=24.20 E-value=3.9e+02 Score=23.94 Aligned_cols=69 Identities=13% Similarity=0.201 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4724 758 KKAKLAEAEADYAVQMEKLN----SKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKLERAEKLIG 826 (1650)
Q Consensus 758 ~~~~l~~~e~~l~~~~~~L~----~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~~Li~ 826 (1650)
.+..-..++..+..++.... ..+..+..+++.++.++.+.+...++.+.|-+-.-.....+..-.+|+.
T Consensus 6 l~~~~~sLE~~l~e~e~~~~~~~~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~LlnvK~~Ld~EIatYRkLLE 78 (84)
T 1gk4_A 6 LKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLE 78 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHc
Confidence 44455566667766665543 3444555555556666655555555555554443344444444455555
No 467
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=24.18 E-value=3.8e+02 Score=23.84 Aligned_cols=57 Identities=18% Similarity=0.142 Sum_probs=29.1
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4724 755 VGPKKAKLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQI 811 (1650)
Q Consensus 755 v~P~~~~l~~~e~~l~~~~~~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~ 811 (1650)
+++...+=..++..+...+..|+..+.+-..+...+..+...++-...+...+...+
T Consensus 15 lq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~elRqgL 71 (79)
T 3cvf_A 15 VQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFELSELREGL 71 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 333344444445555555555555555555555555555555555555555554444
No 468
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=24.12 E-value=33 Score=40.47 Aligned_cols=29 Identities=14% Similarity=0.266 Sum_probs=23.8
Q ss_pred hcCCCCceEEEecCCchhhhHHHHHHHhc
Q psy4724 71 LQQPKGHAMLITIGGSGAAEVTKLATFMN 99 (1650)
Q Consensus 71 l~~p~G~alLvGvgGSGrqSLtrLAafi~ 99 (1650)
+..+.|-.+++|+.||||.||-..-+|..
T Consensus 19 i~~~~g~~~i~G~NGaGKTTll~ai~~al 47 (365)
T 3qf7_A 19 IEFQSGITVVEGPNGAGKSSLFEAISFAL 47 (365)
T ss_dssp EECCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EecCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 45567888899999999999988777663
No 469
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=24.09 E-value=43 Score=35.47 Aligned_cols=26 Identities=12% Similarity=0.018 Sum_probs=18.9
Q ss_pred eEEEecCCchhhhHHHHHHHhcCCce
Q psy4724 78 AMLITIGGSGAAEVTKLATFMNEYVL 103 (1650)
Q Consensus 78 alLvGvgGSGrqSLtrLAafi~~~~~ 103 (1650)
..|+|..||||.|+++.-+-..|+.+
T Consensus 15 IgltG~~GSGKSTva~~L~~~lg~~v 40 (192)
T 2grj_A 15 IGVTGKIGTGKSTVCEILKNKYGAHV 40 (192)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCEE
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCEE
Confidence 35778899999999887655445443
No 470
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=24.04 E-value=30 Score=35.33 Aligned_cols=18 Identities=22% Similarity=0.383 Sum_probs=15.9
Q ss_pred CceEEEecCCchhhhHHH
Q psy4724 76 GHAMLITIGGSGAAEVTK 93 (1650)
Q Consensus 76 G~alLvGvgGSGrqSLtr 93 (1650)
-+.+++|..|+||.||.+
T Consensus 10 ~~i~v~G~~~~GKssli~ 27 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTI 27 (181)
T ss_dssp EEEEEEECTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 478999999999999964
No 471
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=24.01 E-value=3.8e+02 Score=23.80 Aligned_cols=41 Identities=12% Similarity=0.246 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4724 773 MEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIEL 813 (1650)
Q Consensus 773 ~~~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~ 813 (1650)
+++|...+......+.+|.+.+....+...+.+.++.+++.
T Consensus 30 ~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~ee 70 (81)
T 1wt6_A 30 SREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMEL 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444445544444
No 472
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=24.00 E-value=27 Score=35.03 Aligned_cols=18 Identities=22% Similarity=0.464 Sum_probs=15.7
Q ss_pred CCceEEEecCCchhhhHH
Q psy4724 75 KGHAMLITIGGSGAAEVT 92 (1650)
Q Consensus 75 ~G~alLvGvgGSGrqSLt 92 (1650)
.=+.+++|..|+||.||.
T Consensus 3 ~~~i~v~G~~~~GKSsli 20 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALT 20 (167)
T ss_dssp EEEEEEECCTTSSHHHHH
T ss_pred EEEEEEECCCCCCHHHHH
Confidence 347899999999999994
No 473
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=23.98 E-value=38 Score=34.20 Aligned_cols=28 Identities=18% Similarity=0.221 Sum_probs=22.9
Q ss_pred cCCCCceEEEecCCchhhhHHHHHHHhc
Q psy4724 72 QQPKGHAMLITIGGSGAAEVTKLATFMN 99 (1650)
Q Consensus 72 ~~p~G~alLvGvgGSGrqSLtrLAafi~ 99 (1650)
..+.|-.+++|..||||.|+..--+|..
T Consensus 20 ~f~~g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 20 EFKEGINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp ECCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EcCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4456778999999999999988777754
No 474
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=23.95 E-value=29 Score=35.39 Aligned_cols=18 Identities=22% Similarity=0.457 Sum_probs=15.7
Q ss_pred ceEEEecCCchhhhHHHH
Q psy4724 77 HAMLITIGGSGAAEVTKL 94 (1650)
Q Consensus 77 ~alLvGvgGSGrqSLtrL 94 (1650)
+.+++|..|+||.||.+-
T Consensus 9 ~i~v~G~~~~GKSsli~~ 26 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNR 26 (177)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 689999999999999653
No 475
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=23.91 E-value=30 Score=35.93 Aligned_cols=18 Identities=22% Similarity=0.381 Sum_probs=15.9
Q ss_pred ceEEEecCCchhhhHHHH
Q psy4724 77 HAMLITIGGSGAAEVTKL 94 (1650)
Q Consensus 77 ~alLvGvgGSGrqSLtrL 94 (1650)
..++||.+|+||.||.+.
T Consensus 4 kv~ivG~~gvGKStLl~~ 21 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQ 21 (184)
T ss_dssp EEEEESCTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 578999999999999765
No 476
>3c9i_A Tail needle protein GP26; xenon, coiled-coil, protein fiber, coiled coil, late protein, viral protein; 1.95A {Bacteriophage P22} PDB: 2poh_A
Probab=23.87 E-value=5.7e+02 Score=26.61 Aligned_cols=69 Identities=16% Similarity=0.216 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhch
Q psy4724 762 LAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKLERAEKLIGGLGG 830 (1650)
Q Consensus 762 l~~~e~~l~~~~~~L~~~~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~~Li~~L~~ 830 (1650)
|..-|.++..++..+..-+.++..-++.|+.++..+..+..+...|+.++..++.|+.-++.=|+.|..
T Consensus 79 L~dHe~rI~a~~a~l~dHE~RIt~~~~~ia~~e~Rit~~e~~i~~l~~~v~~ld~~vt~~et~Isal~~ 147 (242)
T 3c9i_A 79 LADHEARIKQLRIDVDDHESRITANTKAITALNVRVTTAEGEIASLQTNVSALDGRVTTAENNISALQA 147 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eecchhhhhhhhcccccHHHHhhhhhhhhhhhhheeecccccchhhhhhhhhhcccccccccchhhhhh
Confidence 333455555555555555566666666666666666777777777777777777777666666665543
No 477
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=23.83 E-value=24 Score=35.70 Aligned_cols=19 Identities=11% Similarity=0.144 Sum_probs=16.1
Q ss_pred CCceEEEecCCchhhhHHH
Q psy4724 75 KGHAMLITIGGSGAAEVTK 93 (1650)
Q Consensus 75 ~G~alLvGvgGSGrqSLtr 93 (1650)
.=+.+++|..|+||.||.+
T Consensus 3 ~~~i~v~G~~~~GKssli~ 21 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVL 21 (170)
T ss_dssp EEEEEEECSTTSSHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHH
Confidence 3468999999999999954
No 478
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=23.81 E-value=34 Score=38.92 Aligned_cols=20 Identities=20% Similarity=0.164 Sum_probs=16.7
Q ss_pred ceEEEecCCchhhhHHHHHH
Q psy4724 77 HAMLITIGGSGAAEVTKLAT 96 (1650)
Q Consensus 77 ~alLvGvgGSGrqSLtrLAa 96 (1650)
..+|+|+.||||.|+++.-+
T Consensus 4 ~I~l~G~~GsGKST~a~~L~ 23 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAREFI 23 (301)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 36899999999999987544
No 479
>3ps5_A Tyrosine-protein phosphatase non-receptor type 6; SH2, PTP, hydrolase, signaling protein; 3.10A {Homo sapiens}
Probab=23.62 E-value=42 Score=42.42 Aligned_cols=9 Identities=33% Similarity=0.538 Sum_probs=4.5
Q ss_pred cCCCCCCCc
Q psy4724 1414 SLPLNNTPE 1422 (1650)
Q Consensus 1414 ~lp~~~~p~ 1422 (1650)
.+|....|.
T Consensus 416 ~WPD~gvP~ 424 (595)
T 3ps5_A 416 SWPDHGVPS 424 (595)
T ss_dssp CCCSSSSCS
T ss_pred CcccCCccC
Confidence 466544443
No 480
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=23.60 E-value=1.3e+02 Score=21.86 Aligned_cols=26 Identities=8% Similarity=0.079 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4724 790 LQALRDELAQKSKDKKELEDQIELCK 815 (1650)
Q Consensus 790 l~~l~~~~~~~~~e~~~l~~~~~~~~ 815 (1650)
..+|++..++...++..|+.+++..+
T Consensus 3 MnQLEdKVEeLl~~~~~Le~EV~RLk 28 (34)
T 3c3f_A 3 MXQIEXKLEXILSXLYHXENEXARIX 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 34556666666777777777765443
No 481
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=23.54 E-value=36 Score=39.02 Aligned_cols=23 Identities=26% Similarity=0.476 Sum_probs=18.0
Q ss_pred ceEEEecCCchhhhHH-HHHHHhc
Q psy4724 77 HAMLITIGGSGAAEVT-KLATFMN 99 (1650)
Q Consensus 77 ~alLvGvgGSGrqSLt-rLAafi~ 99 (1650)
-.+++|++||||.|++ .||.++.
T Consensus 106 vi~ivG~~GsGKTTl~~~LA~~l~ 129 (306)
T 1vma_A 106 VIMVVGVNGTGKTTSCGKLAKMFV 129 (306)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEcCCCChHHHHHHHHHHHHH
Confidence 5789999999999875 4666654
No 482
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=23.51 E-value=34 Score=36.50 Aligned_cols=21 Identities=14% Similarity=0.158 Sum_probs=17.6
Q ss_pred CCCceEEEecCCchhhhHHHH
Q psy4724 74 PKGHAMLITIGGSGAAEVTKL 94 (1650)
Q Consensus 74 p~G~alLvGvgGSGrqSLtrL 94 (1650)
+.-+.+++|.+|+||.||..-
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~ 31 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTL 31 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 345899999999999999653
No 483
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=23.51 E-value=1.3e+02 Score=21.91 Aligned_cols=26 Identities=15% Similarity=0.266 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4724 790 LQALRDELAQKSKDKKELEDQIELCK 815 (1650)
Q Consensus 790 l~~l~~~~~~~~~e~~~l~~~~~~~~ 815 (1650)
..+|++..++...++..|+.++...+
T Consensus 3 MnQLE~kVEeLl~~n~~Le~eV~rLk 28 (34)
T 2oxj_A 3 MXQLEXKVXELLXKNXHLEXEVXRLK 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 44566666666777777777765443
No 484
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=23.30 E-value=60 Score=37.15 Aligned_cols=25 Identities=4% Similarity=-0.025 Sum_probs=19.7
Q ss_pred CCC-ceEEEecCCchhhhHHHHHHHh
Q psy4724 74 PKG-HAMLITIGGSGAAEVTKLATFM 98 (1650)
Q Consensus 74 p~G-~alLvGvgGSGrqSLtrLAafi 98 (1650)
++| -.-|+|..||||.||+++-+-+
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 444 5668999999999999876654
No 485
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=23.26 E-value=31 Score=34.89 Aligned_cols=19 Identities=16% Similarity=0.146 Sum_probs=16.1
Q ss_pred CceEEEecCCchhhhHHHH
Q psy4724 76 GHAMLITIGGSGAAEVTKL 94 (1650)
Q Consensus 76 G~alLvGvgGSGrqSLtrL 94 (1650)
=+.+++|..|+||.||.+-
T Consensus 7 ~~i~v~G~~~~GKssli~~ 25 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLR 25 (170)
T ss_dssp EEEEEECCTTSCHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHH
Confidence 3689999999999999643
No 486
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=23.24 E-value=3.3e+02 Score=26.87 Aligned_cols=47 Identities=15% Similarity=0.215 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhccHHH
Q psy4724 791 QALRDELAQKSKDKKELEDQIELCKQKLERAEKLIGGLGGEKTRWSE 837 (1650)
Q Consensus 791 ~~l~~~~~~~~~e~~~l~~~~~~~~~rl~ra~~Li~~L~~E~~rW~~ 837 (1650)
+...+-|+.++.....-+..++.|+.|+++++.=+.+|..+-+-+.+
T Consensus 58 q~Atd~ye~ai~n~~sA~~~~d~lekKl~~aq~kL~~L~P~~P~Yak 104 (158)
T 3tul_A 58 QEATDLYEASIKKTDTAKSVYDAATKKLTQAQNKLQSLDPADPGYAQ 104 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-------CH
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHH
Confidence 34444555555555566667777777788888888888877666544
No 487
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=23.21 E-value=3.1e+02 Score=24.26 Aligned_cols=50 Identities=18% Similarity=0.208 Sum_probs=0.0
Q ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHH
Q psy4724 754 IVGPKKAKLAEAEADYAVQMEKLNSKRA-------------------QLATVLGKLQALRDELAQKSKD 803 (1650)
Q Consensus 754 ~v~P~~~~l~~~e~~l~~~~~~L~~~~~-------------------~l~~~~~~l~~l~~~~~~~~~e 803 (1650)
.++-++.++..-|.+|..++..|..... .+..++.+|.+|+.++.+.++.
T Consensus 6 ~l~eLq~e~~~~E~QL~~A~QKLkdA~~~~e~DPDevNK~~~~~R~~~V~~lq~Ki~elkrqlAd~va~ 74 (78)
T 2ic6_A 6 TLKEVQDNITLHEQRLVTTRQKLKDAERAVELDPDDVNKSTLQSRRAAVSALETKLGELKRELADLIAA 74 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 488
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=23.19 E-value=55 Score=34.97 Aligned_cols=27 Identities=11% Similarity=0.079 Sum_probs=20.9
Q ss_pred ceEEEecCCchhhhHHHHHHHhcCCce
Q psy4724 77 HAMLITIGGSGAAEVTKLATFMNEYVL 103 (1650)
Q Consensus 77 ~alLvGvgGSGrqSLtrLAafi~~~~~ 103 (1650)
...|+|..||||.|+++.-+-..|+.+
T Consensus 5 ~i~i~G~~gsGkst~~~~l~~~~g~~~ 31 (219)
T 2h92_A 5 NIALDGPAAAGKSTIAKRVASELSMIY 31 (219)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTTCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCce
Confidence 577999999999999986555446543
No 489
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=23.19 E-value=31 Score=34.87 Aligned_cols=18 Identities=22% Similarity=0.399 Sum_probs=15.5
Q ss_pred ceEEEecCCchhhhHHHH
Q psy4724 77 HAMLITIGGSGAAEVTKL 94 (1650)
Q Consensus 77 ~alLvGvgGSGrqSLtrL 94 (1650)
+.+++|..|+||.||.+-
T Consensus 4 ki~ivG~~~~GKSsli~~ 21 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGT 21 (169)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 468999999999999753
No 490
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=23.18 E-value=3.4e+02 Score=29.92 Aligned_cols=22 Identities=27% Similarity=0.268 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy4724 758 KKAKLAEAEADYAVQMEKLNSK 779 (1650)
Q Consensus 758 ~~~~l~~~e~~l~~~~~~L~~~ 779 (1650)
.+.+++.++.+++.++.+++..
T Consensus 65 a~a~l~~a~a~l~~a~~~~~r~ 86 (277)
T 2f1m_A 65 AKGDLAKAQAAANIAQLTVNRY 86 (277)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555443
No 491
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=23.17 E-value=29 Score=35.44 Aligned_cols=21 Identities=19% Similarity=0.264 Sum_probs=17.5
Q ss_pred CCCceEEEecCCchhhhHHHH
Q psy4724 74 PKGHAMLITIGGSGAAEVTKL 94 (1650)
Q Consensus 74 p~G~alLvGvgGSGrqSLtrL 94 (1650)
+.-+.+++|.+|+||.||.+-
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~ 25 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTC 25 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHH
T ss_pred ceEEEEEECcCCCCHHHHHHH
Confidence 345789999999999999754
No 492
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=23.13 E-value=36 Score=43.14 Aligned_cols=38 Identities=18% Similarity=0.168 Sum_probs=26.9
Q ss_pred cCCCC-ceEEEecCCchhhhHHHHHHHhcCCceEEEEEc
Q psy4724 72 QQPKG-HAMLITIGGSGAAEVTKLATFMNEYVLFEIEIL 109 (1650)
Q Consensus 72 ~~p~G-~alLvGvgGSGrqSLtrLAafi~~~~~fqIeit 109 (1650)
.-+.| ..-+||..||||.||.++-+=+..-+-=+|.+.
T Consensus 377 ~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~ 415 (598)
T 3qf4_B 377 HIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVD 415 (598)
T ss_dssp ECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEET
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEEC
Confidence 34444 778999999999999998765544444455443
No 493
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=23.13 E-value=25 Score=42.16 Aligned_cols=31 Identities=13% Similarity=0.148 Sum_probs=26.8
Q ss_pred hcCCCCceEEEecCCchhhhHHHHHHHhcCC
Q psy4724 71 LQQPKGHAMLITIGGSGAAEVTKLATFMNEY 101 (1650)
Q Consensus 71 l~~p~G~alLvGvgGSGrqSLtrLAafi~~~ 101 (1650)
|..+.|-..|||..||||.||.+.-+++.+.
T Consensus 56 l~~~~G~~~lvG~NGaGKStLl~aI~~l~~~ 86 (415)
T 4aby_A 56 LELGGGFCAFTGETGAGKSIIVDALGLLLGG 86 (415)
T ss_dssp EECCSSEEEEEESHHHHHHHHTHHHHHHTTC
T ss_pred EecCCCcEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3556778899999999999999999999874
No 494
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=23.05 E-value=1.4e+02 Score=26.21 Aligned_cols=15 Identities=7% Similarity=0.131 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHHH
Q psy4724 785 TVLGKLQALRDELAQ 799 (1650)
Q Consensus 785 ~~~~~l~~l~~~~~~ 799 (1650)
.++.+++.|-++|..
T Consensus 18 ~LQTrfARLLaEy~s 32 (74)
T 3swf_A 18 LLQTRFARILAEYES 32 (74)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 495
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=23.02 E-value=3.2e+02 Score=25.42 Aligned_cols=66 Identities=14% Similarity=0.154 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHhhhchhhccHHHHHHHHHHH
Q psy4724 780 RAQLATVLGKLQALRDELAQKSKDKKELEDQIEL------------CKQKLERAEKLIGGLGGEKTRWSEASANLSKA 845 (1650)
Q Consensus 780 ~~~l~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~------------~~~rl~ra~~Li~~L~~E~~rW~~~~~~~~~~ 845 (1650)
+++...+..+|..|+.+++..++.++-|+.-... ++.+|..+..=|..|..|..+++..+.+++..
T Consensus 14 eqRkkkL~~Ki~el~~ei~ke~~~regl~Km~~vY~~nP~~GD~~s~~~~L~e~~~kid~L~~el~K~q~~L~e~e~~ 91 (98)
T 2ke4_A 14 EQQRKRLQQQLEERSRELQKEVDQREALKKMKDVYEKTPQMGDPASLEPQIAETLSNIERLKLEVQKYEAWLAEAESR 91 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCGGGCCGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
No 496
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=22.97 E-value=1.3e+02 Score=33.91 Aligned_cols=187 Identities=13% Similarity=0.092 Sum_probs=0.0
Q ss_pred CCeEEEecccccccccchHHHhHHHHhhcCeEEEEecCeeeeecCCeeEEEEeCCCCCCCCcccccceEEEEeeeChhhH
Q psy4724 975 GTAVLLENIQETIDSSLEPVLLKSYYKIQNQLIMTLNNKEIEYNIKFRLYITTRLKNPHYIPEILTKITLINFMITPQGL 1054 (1650)
Q Consensus 975 G~~vlie~v~e~~dp~l~p~L~~~~~~~~~~~~i~ig~~~i~~~~~FrL~l~Tk~~np~~~pe~~~~~tvinf~vt~~gL 1054 (1650)
+..|+|.++ +.+++.....|.+-+.. +.++.+++++|..+. .+.|.+.+++.+|.|..-...-
T Consensus 103 ~~vliiDe~-~~l~~~~~~~L~~~le~---------------~~~~~~~i~~~~~~~-~l~~~l~sr~~~i~~~~~~~~~ 165 (319)
T 2chq_A 103 FKIIFLDEA-DALTADAQAALRRTMEM---------------YSKSCRFILSCNYVS-RIIEPIQSRCAVFRFKPVPKEA 165 (319)
T ss_dssp CEEEEEETG-GGSCHHHHHTTGGGTSS---------------SSSSEEEEEEESCGG-GSCHHHHTTCEEEECCCCCHHH
T ss_pred ceEEEEeCC-CcCCHHHHHHHHHHHHh---------------cCCCCeEEEEeCChh-hcchHHHhhCeEEEecCCCHHH
Q ss_pred HHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhHH-HHHHHHHHHHHH
Q psy4724 1055 QNQLLGIVVAKEKPDLETKKNELIIESANNKKILKETEDKILEVLSSSQGNILEDESAVQILTSSKV-LSAEITAKQEIS 1133 (1650)
Q Consensus 1055 e~qlL~~vv~~e~peLe~~~~~l~~~~~~~k~~L~~lEd~lL~~L~~s~g~iLdd~~li~~L~~sK~-~~~~i~~~l~~~ 1133 (1650)
-.++|...+..+...+...-.+.+..........- ..+|+.+... +.-++.+.+...+..... ...++...+..
T Consensus 166 ~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~r~~---~~~l~~~~~~-~~~i~~~~v~~~~~~~~~~~~~~l~~~~~~- 240 (319)
T 2chq_A 166 MKKRLLEICEKEGVKITEDGLEALIYISGGDFRKA---INALQGAAAI-GEVVDADTIYQITATARPEEMTELIQTALK- 240 (319)
T ss_dssp HHHHHHHHHHTTCCCBCHHHHHHHHHTTTTCHHHH---HHHHHHHHHS-SSCBCHHHHHHHTTCCCHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHH---HHHHHHHHHc-CCCCCHHHHHHHHCCCCHHHHHHHHHHHHh-
Q ss_pred HHHHHHHHHHHhhhHHHHH-HHHHHHHHHHHhhcCCcccccCHHHHHHHHHHhhh
Q psy4724 1134 SRTEKEIDDARMMYIPVSK-HSSVLFFCCAELSNIDPMYQYSLNWFINLYVQSIE 1187 (1650)
Q Consensus 1134 ~~~~~~i~~~r~~y~pvA~-~~s~lyf~l~~L~~i~~mYq~Sl~~f~~lf~~~i~ 1187 (1650)
..+..+.+.++.+-. .|.....++..|...-...+||......++....+
T Consensus 241 ----~~~~~a~~~l~~l~~~~g~~~~~i~~~l~~~~~~l~~~~~~l~~~~~~l~~ 291 (319)
T 2chq_A 241 ----GNFMEARELLDRLMVEYGMSGEDIVAQLFREIISMPIKDSLKVQLIDKLGE 291 (319)
T ss_dssp ----TCHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTSCSCTTHHHHHHHHHHH
T ss_pred ----CCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHH
No 497
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=22.79 E-value=55 Score=35.06 Aligned_cols=34 Identities=12% Similarity=0.055 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEEecCCchhhhHHH
Q psy4724 58 LYIIQHISRLCRILQQPKGHAMLITIGGSGAAEVTK 93 (1650)
Q Consensus 58 ~~ai~Hv~rI~Ril~~p~G~alLvGvgGSGrqSLtr 93 (1650)
++..+++-+..+ ..+....+++|.+|+||.||..
T Consensus 23 ~~~a~~~r~~~~--~~~~~~i~ivG~~gvGKTtl~~ 56 (226)
T 2hf9_A 23 KRLADKNRKLLN--KHGVVAFDFMGAIGSGKTLLIE 56 (226)
T ss_dssp HHHHHHHHHHHH--HTTCEEEEEEESTTSSHHHHHH
T ss_pred HHHHHHHHHHHH--hCCCeEEEEEcCCCCCHHHHHH
No 498
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=22.78 E-value=38 Score=38.59 Aligned_cols=27 Identities=19% Similarity=0.330 Sum_probs=0.0
Q ss_pred hcCCCCceEEEecCCchhhhHHHHHHHh
Q psy4724 71 LQQPKGHAMLITIGGSGAAEVTKLATFM 98 (1650)
Q Consensus 71 l~~p~G~alLvGvgGSGrqSLtrLAafi 98 (1650)
+. ++.-..++|.+|+||.|+++.-|..
T Consensus 95 ~~-~~~~i~i~g~~G~GKTT~~~~la~~ 121 (295)
T 1ls1_A 95 LK-DRNLWFLVGLQGSGKTTTAAKLALY 121 (295)
T ss_dssp CC-SSEEEEEECCTTTTHHHHHHHHHHH
T ss_pred cC-CCeEEEEECCCCCCHHHHHHHHHHH
No 499
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=22.76 E-value=34 Score=43.14 Aligned_cols=62 Identities=18% Similarity=0.097 Sum_probs=0.0
Q ss_pred CCCceEEEecCCchhhhHHHHHHHhcCCceEEEEEcccCCcchhHHHHHHHHHHhccCCCCCEEE
Q psy4724 74 PKGHAMLITIGGSGAAEVTKLATFMNEYVLFEIEILKTYGLTDWRDDLCRLMKKSGGKDAKPMTF 138 (1650)
Q Consensus 74 p~G~alLvGvgGSGrqSLtrLAafi~~~~~fqIeitk~Yg~~~f~eDLk~l~~~~g~~~~k~~vF 138 (1650)
|+....|||..||||.||.++-+=+..-+-=+|.+. |.+--.-+...+-...|++...|..|
T Consensus 368 ~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~---g~~~~~~~~~~~~~~i~~v~Q~~~l~ 429 (582)
T 3b60_A 368 AGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMD---GHDLREYTLASLRNQVALVSQNVHLF 429 (582)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEET---TEETTTBCHHHHHHTEEEECSSCCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEEC---CEEccccCHHHHHhhCeEEccCCcCC
No 500
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=22.72 E-value=32 Score=34.95 Aligned_cols=17 Identities=18% Similarity=0.349 Sum_probs=0.0
Q ss_pred ceEEEecCCchhhhHHH
Q psy4724 77 HAMLITIGGSGAAEVTK 93 (1650)
Q Consensus 77 ~alLvGvgGSGrqSLtr 93 (1650)
+.+++|..|+||.||.+
T Consensus 6 ki~i~G~~~vGKSsl~~ 22 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLAS 22 (175)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCccHHHHHH
Done!