RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy4724
(1650 letters)
>gnl|CDD|217325 pfam03028, Dynein_heavy, Dynein heavy chain and region D6 of dynein
motor. This family represents the C-terminal region of
dynein heavy chain. The chain also contains ATPase
activity and microtubule binding ability and acts as a
motor for the movement of organelles and vesicles along
microtubules. Dynein is also involved in cilia and
flagella movement. The dynein subunit consists of at
least two heavy chains and a number of intermediate and
light chains. The 380 kDa motor unit of dynein belongs
to the AAA class of chaperone-like ATPases. The core of
the 380 kDa motor unit contains a concatenated chain of
six AAA modules, of which four correspond to the ATP
binding sites with P-loop signatures described
previously, and two are modules in which the P loop has
been lost in evolution. This C-terminal domain carries
the D6 region of the dynein motor where the P-loop has
been lost in evolution but the general structure of a
potential ATP binding site appears to be retained.
Length = 706
Score = 227 bits (580), Expect = 2e-62
Identities = 77/182 (42%), Positives = 112/182 (61%), Gaps = 7/182 (3%)
Query: 364 FSFVLCTGQGEIAKSYIDEGLKKGLWIVLQNCHVAKSWMKELERICAEVIVPANTHQEFR 423
S L GQG IA+ I+ K G W++LQN H+A SW+ LE+ E + P +H +FR
Sbjct: 148 HSVSLGQGQGPIAEKAIETAAKSGHWVMLQNIHLAPSWLPTLEKKL-ESLTP-GSHPDFR 205
Query: 424 LWLTSYPSTTFPVSVLENGIKMIIEPPKGIKNNLLRSYTNDPINSDDFYNDSKNVAAWHK 483
L+LT+ P+ + P+ +L+N IK+ EPP G+K NLLR+ ++ + K A + +
Sbjct: 206 LFLTAEPAPSIPIGLLQNSIKITNEPPTGLKANLLRALSSFTQ---ETLEMCKKPAEFKR 262
Query: 484 LLFSLCLFHAVVQERKQYGPLGWNIPYEFNLSDLNISMKQLQMFLNDY--TTIPFDALIY 541
+LF LC FHAVVQER+++GPLGWN YEFN DL IS+ L +L+ +P++ L Y
Sbjct: 263 ILFLLCFFHAVVQERRKFGPLGWNKSYEFNEGDLRISLDVLDNYLDANAPDKVPWEDLRY 322
Query: 542 LT 543
L
Sbjct: 323 LF 324
Score = 212 bits (542), Expect = 2e-57
Identities = 69/164 (42%), Positives = 102/164 (62%), Gaps = 7/164 (4%)
Query: 577 KKGLWIVLQNCHVAKSWMKELERICAEVIVPANTHQEFRLWLTSYPSTTFPVSVLENGIK 636
K G W++LQN H+A SW+ LE+ E + P +H +FRL+LT+ P+ + P+ +L+N IK
Sbjct: 169 KSGHWVMLQNIHLAPSWLPTLEKKL-ESLTP-GSHPDFRLFLTAEPAPSIPIGLLQNSIK 226
Query: 637 MIIEPPKGIKNNLFRSYTNDPINSDDFYNDSKNVAAWHKLLFSLCLFHAVVQERKQYGPL 696
+ EPP G+K NL R+ ++ + K A + ++LF LC FHAVVQER+++GPL
Sbjct: 227 ITNEPPTGLKANLLRALSSFTQ---ETLEMCKKPAEFKRILFLLCFFHAVVQERRKFGPL 283
Query: 697 GWNIPYEFNLSDLNISMKQLQMFLNDY--TTIPFDALIYLTASI 738
GWN YEFN DL IS+ L +L+ +P++ L YL I
Sbjct: 284 GWNKSYEFNEGDLRISLDVLDNYLDANAPDKVPWEDLRYLFGEI 327
Score = 142 bits (360), Expect = 2e-34
Identities = 57/172 (33%), Positives = 95/172 (55%), Gaps = 3/172 (1%)
Query: 1406 QGIQSYIQSLPLNNTPEIFGLHENADLTKNFNETRLVLGNILLCAQQGSTPGAQPGDAEA 1465
+G YI+ LP ++PE +GLH NA++ +T ++ LL Q G+
Sbjct: 377 EGYLQYIEELPPESSPEWYGLHPNAEIGFLTQQTEKLI-RTLLELQPREAGGSGGSGVSR 435
Query: 1466 KNVR--IIDELLGKFPEQFDEEAAGRKYPILYNQSMNTVLKQELIRYNRLTVIIKKSLQE 1523
+ V ++ ++L K P+ F E K + VL QE+ R N+L I++SL+E
Sbjct: 436 EEVVKQVLRDILEKLPKLFPIEEIKLKRTEEIKDPLFRVLFQEIERMNKLLKEIRRSLKE 495
Query: 1524 VRQAVKGLIVMSKELEEINTSIMFGKIPQAWASKSYPSLKPLGSYIVDLLAR 1575
+ +KG + M+ +LE++ ++ G++P +WA +YPSLKPLGS++ DLL R
Sbjct: 496 LDLGLKGELTMTNDLEDLAKALFKGRVPASWAKLAYPSLKPLGSWVTDLLRR 547
Score = 124 bits (314), Expect = 7e-29
Identities = 52/150 (34%), Positives = 83/150 (55%), Gaps = 3/150 (2%)
Query: 1261 PNPSPSWLSNKTWTDIIQISKLPQLGDLKASVKTKNSEWKSYYDSKTPEKERV--SYVQD 1318
PNP WL+ + W I ++S+L + L ++ WK +YDS+ PE+E++ +
Sbjct: 6 PNPKLDWLTVQQWGSICRLSELEEFRGLDDDIEKNAKRWKKWYDSEAPEEEKLPQEWKDR 65
Query: 1319 KSDICVLNILKIIRPDKVIQGIQIYVSKNLGEQYIVSPPFSLKQSYDDSNCCTPLIFILS 1378
KS L +L+ +RPD++ + +VS+ LGE+++ P L + Y++S+ TP+ FILS
Sbjct: 66 KSAFQKLLLLRALRPDRMTYAARNFVSEKLGEKFVEPQPLDLSKIYEESSPSTPIFFILS 125
Query: 1379 AGSDPMDLLLKFNSDMNAAKPLT-VSLGQG 1407
G DP + K M K VSLGQG
Sbjct: 126 PGVDPSKDVEKLAKKMGFGKKFHSVSLGQG 155
>gnl|CDD|193257 pfam12781, AAA_9, ATP-binding dynein motor region D5. The 380 kDa
motor unit of dynein belongs to the AAA class of
chaperone-like ATPases. The core of the 380 kDa motor
unit contains a concatenated chain of six AAA modules, of
which four correspond to the ATP binding sites with
P-loop signatures described previously, and two are
modules in which the P loop has been lost in evolution.
This particular family is the D5 ATP-binding region of
the motor, but has lost its P-loop.
Length = 228
Score = 197 bits (502), Expect = 4e-57
Identities = 103/228 (45%), Positives = 146/228 (64%), Gaps = 2/228 (0%)
Query: 899 LGDAVKIRSWNINGLPVDNFSIENGIILFNSNKWPLLIDPQGQANKWLKNVEKGNLSVVK 958
L D + +WN GLP D S EN IL N +WPL++DPQ Q KW+KN +L V++
Sbjct: 2 LTDDADVATWNNEGLPSDRMSTENATILGNCERWPLMVDPQLQGIKWIKNKYGSDLRVIR 61
Query: 959 LTDATLLRTLERAIRTGTAVLLENIQETIDSSLEPVLLKSYYKIQNQLIMTLNNKEIEYN 1018
+ L +E+AI G VL+ENI+E+ID L+P+L ++ I+ + + +KE+EYN
Sbjct: 62 IGQKGYLDVIEQAISEGDTVLIENIEESIDPVLDPLLGRN--TIKKGRYIKIGDKEVEYN 119
Query: 1019 IKFRLYITTRLKNPHYIPEILTKITLINFMITPQGLQNQLLGIVVAKEKPDLETKKNELI 1078
KFRL + T+L NPHY PE+ + TLINF +T GL++QLL VVAKE+PDLE K++L
Sbjct: 120 PKFRLILHTKLANPHYKPEMQAQCTLINFTVTRDGLEDQLLAAVVAKERPDLEQLKSDLT 179
Query: 1079 IESANNKKILKETEDKILEVLSSSQGNILEDESAVQILTSSKVLSAEI 1126
+ K +LKE ED +L LSS+ GN L D + V+ L ++K +AEI
Sbjct: 180 KQQNEFKIVLKELEDSLLSRLSSASGNFLGDTALVENLETTKHTAAEI 227
>gnl|CDD|227570 COG5245, DYN1, Dynein, heavy chain [Cytoskeleton].
Length = 3164
Score = 89.3 bits (221), Expect = 2e-17
Identities = 76/491 (15%), Positives = 173/491 (35%), Gaps = 18/491 (3%)
Query: 748 YDRVIKIVGPKKAKLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKEL 807
+V+++ P + + + + + ++L + + ++ R +
Sbjct: 2299 RSKVLEVKIPLREEEKRIDGEAFLVEDRLTLGKGLSSDLMTFKLRRRSYYSLDILRVHGK 2358
Query: 808 EDQIELCKQKLERAEKLIGGLGGEKTRWSEASANLSKALVNCIGDILICAGIITYLGAFT 867
++ + + R+ + L E + W + + K +V GD + + Y+G T
Sbjct: 2359 IADMDTVHKDVLRSIFVSEILINEDSEWGGVFSEVPKLMVELDGDGHPSSCLHPYIG--T 2416
Query: 868 VDFRNDLIEQWKS---LSSQEQMPFTLSFSMITTLGDAVKIRSWNINGLPVDNFSIEN-G 923
+ F IE S +S + + IT ++ ++ +EN
Sbjct: 2417 LGFLCRAIEFGMSFIRISKEFRDKEIRRRQFITEGVQKIEDFKEEAC---STDYGLENSR 2473
Query: 924 IILFNSNKWPLLIDPQGQANKWLKNVEKGNLSV-VKLTDATLLRTLERAIRTGTAVLLEN 982
I + +L DP + + + ++ + L +A R G+ ++ +
Sbjct: 2474 IRKDLQDLTAVLNDPSSKIVTSQRQMYDEKKAILGSFREMEFAFGLSQARREGSDKIIGD 2533
Query: 983 IQETIDSSLEPVLLKSYYKIQNQLIMTLNNKEIEYNIKFRLYITTRLKNPHYIPEILTK- 1041
E +D + ++ + + +++ + +N EI + ++ + ++ + I K
Sbjct: 2534 -AEALDEEIGRLIKEEFKSNLSEVKVMINPPEIVRSTVEAVFWLSEGRSGD-MGSIEWKQ 2591
Query: 1042 ITLINFMITPQGLQNQLLGIVVAKEKPDLETKKNELIIESANNKKILKETEDKILEVLSS 1101
+ + F+ G + ++ + L + L A L +L L
Sbjct: 2592 LIQVMFVSKVLGCETEIPDALEKLVSGPLFVHEKALNALKACGSLFLWVLARYLLAKLML 2651
Query: 1102 SQGNILEDESAVQILTSSKVLSAEITAKQEISSRTEKEIDDARMMYIPVSKHSSVLFFCC 1161
S N+ + + +L + K EI ++ S E ID + Y K +
Sbjct: 2652 SISNMEQTDEIAVLLHNLKKSRKEIEEEESESMEIEDRIDALKSEYNASVKRLESIRVEI 2711
Query: 1162 AELSNIDPMYQYSLNWFINLYVQSIEGSEKTDQLDKRLKILMNHFTYSIYKNICRSLFED 1221
A MY S+ + + + K+ L +LM+ + RS F
Sbjct: 2712 AMFDEKALMYNKSICELSSEFEKWR--RMKSKYLCAIRYMLMSSEWI-LDHED-RSGFI- 2766
Query: 1222 HKLVFSFVLCT 1232
H+L SF+L T
Sbjct: 2767 HRLDVSFLLRT 2777
Score = 56.1 bits (135), Expect = 2e-07
Identities = 25/102 (24%), Positives = 42/102 (41%), Gaps = 1/102 (0%)
Query: 61 IQHISRLCRILQQPKGHAMLITIGGSGAAEVTKLATFMNEYVLFEIEILKTYGLTDWRDD 120
+ HI R R L GH +L + GA + + ++N + EI + D+RD
Sbjct: 1822 LLHILRSRRGLLVVGGHGVLKGVLIRGACDAREFVCWLNPRNMREIFGHRDELTGDFRDS 1881
Query: 121 LCRLMKKSGGKDAKPMTFLFSDTQIQNEVFVEHINMLLNTAR 162
L + + F+F ++ F+E N LL+ R
Sbjct: 1882 LKVQDLRRNIHGGRECLFIF-ESIPVESSFLEDFNPLLDNNR 1922
Score = 51.9 bits (124), Expect = 3e-06
Identities = 29/163 (17%), Positives = 45/163 (27%), Gaps = 9/163 (5%)
Query: 376 AKSYIDEGLKKGLWIVLQNCHVAKSWMKELERICAEVIVPANTHQEF-RLWLTSYPSTTF 434
A K+ W + N ++ W K I + + +W + +
Sbjct: 2906 AVLNSLFSRKEKSWFEVYNISLSFGWFKRYVEDVVYPIKASRVCGKVKNMWTSMVDADML 2965
Query: 435 PVSVLENGIKMIIEPPKGIKNNLLRSYTNDPINSDDFYNDSKNVAAWHKLLFSLCLFHAV 494
P+ +L + D + D + D V A F L HA
Sbjct: 2966 PIQLLIAIDSFVSSTYPETGCGYA-----DLVEIDRYPFDYTLVIAC-DDAFYLSWEHAA 3019
Query: 495 VQERKQYGPLGWNIPYEFNLSDLNISMKQLQ--MFLNDYTTIP 535
V GP N F D L+ +FLN
Sbjct: 3020 VASVISAGPKENNEEIYFGDKDFEFKTHLLKNILFLNHLNARK 3062
Score = 48.4 bits (115), Expect = 4e-05
Identities = 28/154 (18%), Positives = 44/154 (28%), Gaps = 9/154 (5%)
Query: 577 KKGLWIVLQNCHVAKSWMKELERICAEVIVPANTHQEF-RLWLTSYPSTTFPVSVLENGI 635
K+ W + N ++ W K I + + +W + + P+ +L
Sbjct: 2915 KEKSWFEVYNISLSFGWFKRYVEDVVYPIKASRVCGKVKNMWTSMVDADMLPIQLLIAID 2974
Query: 636 KMIIEPPKGIKNNLFRSYTNDPINSDDFYNDSKNVAAWHKLLFSLCLFHAVVQERKQYGP 695
+ D + D + D V A F L HA V GP
Sbjct: 2975 SFVSSTYPETGCGYA-----DLVEIDRYPFDYTLVIAC-DDAFYLSWEHAAVASVISAGP 3028
Query: 696 LGWNIPYEFNLSDLNISMKQLQ--MFLNDYTTIP 727
N F D L+ +FLN
Sbjct: 3029 KENNEEIYFGDKDFEFKTHLLKNILFLNHLNARK 3062
>gnl|CDD|193256 pfam12780, AAA_8, P-loop containing dynein motor region D4. The
380 kDa motor unit of dynein belongs to the AAA class of
chaperone-like ATPases. The core of the 380 kDa motor
unit contains a concatenated chain of six AAA modules,
of which four correspond to the ATP binding sites with
P-loop signatures described previously, and two are
modules in which the P loop has been lost in evolution.
This particular family is the D4 ATP-binding region of
the motor.
Length = 268
Score = 83.8 bits (207), Expect = 2e-17
Identities = 40/110 (36%), Positives = 69/110 (62%), Gaps = 1/110 (0%)
Query: 49 NKPIDIVTFLYIIQHISRLCRILQQPKGHAMLITIGGSGAAEVTKLATFMNEYVLFEIEI 108
N +++V F + H+ R+ RIL+ P+G+A+L+ +GGSG +++LA +++ +F+I +
Sbjct: 5 NAVMNLVLFEDAMAHVCRINRILESPRGNALLVGVGGSGKQSLSRLAAYISSLDVFQITL 64
Query: 109 LKTYGLTDWRDDLCRLMKKSGGKDAKPMTFLFSDTQIQNEVFVEHINMLL 158
K YG+ D + DL K+G K+ P FL +D Q+ +E F+ IN LL
Sbjct: 65 RKGYGIPDLKIDLAAQCIKAGVKNV-PTVFLMTDAQVADEQFLVLINDLL 113
Score = 36.5 bits (84), Expect = 0.084
Identities = 13/36 (36%), Positives = 25/36 (69%)
Query: 221 NKPIDIVTFLYIIQHISRLCRILQQPKGHAMLITIG 256
N +++V F + H+ R+ RIL+ P+G+A+L+ +G
Sbjct: 5 NAVMNLVLFEDAMAHVCRINRILESPRGNALLVGVG 40
>gnl|CDD|193253 pfam12777, MT, Microtubule-binding stalk of dynein motor. the 380
kDa motor unit of dynein belongs to the AAA class of
chaperone-like ATPases. The core of the 380 kDa motor
unit contains a concatenated chain of six AAA modules,
of which four correspond to the ATP binding sites with
P-loop signatures described previously, and two are
modules in which the P loop has been lost in evolution.
This family is the region between D4 and D5 and is the
two predicted alpha-helical coiled coil segments that
form the stalk supporting the ATP-sensitive microtubule
binding component.
Length = 344
Score = 77.0 bits (189), Expect = 1e-14
Identities = 40/123 (32%), Positives = 66/123 (53%)
Query: 755 VGPKKAKLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELC 814
V PK+ L +A A+ A EKL +A++A + L L + + DK + + + E
Sbjct: 216 VEPKRQALEKANAELAAAQEKLARIKAKIAELNANLANLTAAFEKATADKLKCQQEAEAT 275
Query: 815 KQKLERAEKLIGGLGGEKTRWSEASANLSKALVNCIGDILICAGIITYLGAFTVDFRNDL 874
+ + A +L+GGL E RW+EA N V GD+L+ ++Y+G FT +RN+L
Sbjct: 276 NRTILLANRLVGGLASENVRWAEAVENFKSQEVTLCGDVLLITAFVSYVGYFTKKYRNEL 335
Query: 875 IEQ 877
+E+
Sbjct: 336 MER 338
>gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional.
Length = 434
Score = 73.8 bits (182), Expect = 2e-13
Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 1559 YPSLKPLGSYIVDLLARR--EGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKK 1616
+ L + YI + L R + K K +KK K KK K+ +KK K+K+K K K
Sbjct: 354 HLLLGKIERYIEEPLKARVIDELRPKTKAPSEKKTGKPSKKVLAKRAEKKEKEKEKPKVK 413
Query: 1617 KKKKKKKKKKKKKKKKKYSRE 1637
K+ + K K++K S E
Sbjct: 414 KRHRDTKNIGKRRKPSGTSEE 434
Score = 55.7 bits (135), Expect = 1e-07
Identities = 17/45 (37%), Positives = 25/45 (55%)
Query: 1594 KKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREG 1638
K K +KK K KK K+ +KK+K+K+K K KK+ + G
Sbjct: 379 KTKAPSEKKTGKPSKKVLAKRAEKKEKEKEKPKVKKRHRDTKNIG 423
Score = 54.2 bits (131), Expect = 4e-07
Identities = 17/45 (37%), Positives = 27/45 (60%)
Query: 1595 KKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGG 1639
K K +KK K KK K+ +KK+K+K+K K KK+ + ++ G
Sbjct: 379 KTKAPSEKKTGKPSKKVLAKRAEKKEKEKEKPKVKKRHRDTKNIG 423
>gnl|CDD|219746 pfam08208, RNA_polI_A34, DNA-directed RNA polymerase I subunit
RPA34.5. This is a family of proteins conserved from
yeasts to human. Subunit A34.5 of RNA polymerase I is a
non-essential subunit which is thought to help Pol I
overcome topological constraints imposed on ribosomal DNA
during the process of transcription.
Length = 193
Score = 69.0 bits (169), Expect = 7e-13
Identities = 28/58 (48%), Positives = 42/58 (72%)
Query: 1576 REGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
+ K +K+ + ++++KK+KKKKK+ KK+ K+KK KK+K + K KKKKKKKKKK
Sbjct: 136 EKETTAKVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKKEKMVEPKGSKKKKKKKKKK 193
Score = 62.4 bits (152), Expect = 1e-10
Identities = 29/53 (54%), Positives = 40/53 (75%)
Query: 1574 ARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKK 1626
A+ E E ++++KK+KKKKK+ KK+KK+KK K +K + K KKKKKKKKKK
Sbjct: 141 AKVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKKEKMVEPKGSKKKKKKKKKK 193
Score = 55.1 bits (133), Expect = 3e-08
Identities = 26/64 (40%), Positives = 42/64 (65%), Gaps = 7/64 (10%)
Query: 1580 GEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKK-------KKKKK 1632
G + + +K+ K +K+ + ++++KK KKKKK+ KK+KK+KK KK+K KKKKK
Sbjct: 129 GSESETSEKETTAKVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKKEKMVEPKGSKKKKK 188
Query: 1633 KYSR 1636
K +
Sbjct: 189 KKKK 192
Score = 53.2 bits (128), Expect = 1e-07
Identities = 20/61 (32%), Positives = 39/61 (63%)
Query: 1577 EGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSR 1636
+ + +K+ K +K+ + ++++K +KKKKK+ KK+KK+KK KK+K + K S+
Sbjct: 125 PSELGSESETSEKETTAKVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKKEKMVEPKGSK 184
Query: 1637 E 1637
+
Sbjct: 185 K 185
Score = 51.3 bits (123), Expect = 6e-07
Identities = 21/60 (35%), Positives = 37/60 (61%)
Query: 1580 GEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGG 1639
G + + + +K+ K +K+ + +++KK+KKKKK+ KK+KK+KK KK+K G
Sbjct: 123 GPPSELGSESETSEKETTAKVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKKEKMVEPKG 182
Score = 50.9 bits (122), Expect = 1e-06
Identities = 22/68 (32%), Positives = 40/68 (58%), Gaps = 7/68 (10%)
Query: 1577 EGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKK------- 1629
+ + +K+ K +K+ + ++++ K+KKKKK+ KK+KK+KK KK+K
Sbjct: 124 PPSELGSESETSEKETTAKVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKKEKMVEPKGS 183
Query: 1630 KKKKYSRE 1637
KKKK ++
Sbjct: 184 KKKKKKKK 191
Score = 49.7 bits (119), Expect = 2e-06
Identities = 22/45 (48%), Positives = 32/45 (71%)
Query: 1570 VDLLARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKK 1614
V+ ++E + +K+ KK+KK+KK KK+K + K KK KKKKKKK
Sbjct: 149 VEEEEKKEKKKKKEVKKEKKEKKDKKEKMVEPKGSKKKKKKKKKK 193
>gnl|CDD|220237 pfam09428, DUF2011, Fungal protein of unknown function (DUF2011).
This is a family of fungal proteins whose function is
unknown.
Length = 130
Score = 60.0 bits (146), Expect = 2e-10
Identities = 19/58 (32%), Positives = 43/58 (74%)
Query: 1576 REGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
+E EK+KKKK+K+ KK++ + ++++ ++ +K+K+ +K ++KK K+++K+K+K
Sbjct: 73 KELLREKEKKKKRKRPGKKRRIALRLRRERTKERAEKEKRTRKNREKKFKRRQKEKEK 130
Score = 58.4 bits (142), Expect = 7e-10
Identities = 17/58 (29%), Positives = 40/58 (68%)
Query: 1583 KKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGG 1640
K +K+ ++K+KKKK+K+ KK++ + ++++ K++ +K+K+ +K ++KK+ R
Sbjct: 70 KVEKELLREKEKKKKRKRPGKKRRIALRLRRERTKERAEKEKRTRKNREKKFKRRQKE 127
Score = 57.3 bits (139), Expect = 2e-09
Identities = 19/60 (31%), Positives = 43/60 (71%)
Query: 1574 ARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
A+ E ++K+KKKK+K+ KK++ + +++ K++ +K+K+ +K ++KK K+++K+K
Sbjct: 69 AKVEKELLREKEKKKKRKRPGKKRRIALRLRRERTKERAEKEKRTRKNREKKFKRRQKEK 128
Score = 56.5 bits (137), Expect = 3e-09
Identities = 18/60 (30%), Positives = 41/60 (68%)
Query: 1570 VDLLARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKK 1629
V+ RE +KK+K+ KK++ + ++++ K++ K+K+ +K ++KK K+++K+K+K
Sbjct: 71 VEKELLREKEKKKKRKRPGKKRRIALRLRRERTKERAEKEKRTRKNREKKFKRRQKEKEK 130
Score = 56.1 bits (136), Expect = 4e-09
Identities = 21/73 (28%), Positives = 46/73 (63%), Gaps = 7/73 (9%)
Query: 1573 LARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKK 1632
L + + EK+ ++K+KKKK+K+ KK++ + ++++ K++ +K+K+ +K ++KK K+
Sbjct: 64 LKKHNAKVEKELLREKEKKKKRKRPGKKRRIALRLRRERTKERAEKEKRTRKNREKKFKR 123
Query: 1633 KYSREGGGGGEKE 1645
+ EKE
Sbjct: 124 R-------QKEKE 129
>gnl|CDD|218336 pfam04935, SURF6, Surfeit locus protein 6. The surfeit locus protein
SURF-6 is shown to be a component of the nucleolar matrix
and has a strong binding capacity for nucleic acids.
Length = 206
Score = 60.8 bits (148), Expect = 5e-10
Identities = 29/57 (50%), Positives = 43/57 (75%), Gaps = 4/57 (7%)
Query: 1582 KKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKK----KKKKKKKKKKKKKKKKKKKKY 1634
K+K+K+KKK KK+ K++K+K +KKK +++KK+ KK+K KK KKKKK KKK +
Sbjct: 149 KRKEKQKKKSKKEWKERKEKVEKKKAERQKKREENLKKRKDDKKNKKKKKAKKKGRI 205
Score = 53.8 bits (130), Expect = 9e-08
Identities = 27/57 (47%), Positives = 38/57 (66%), Gaps = 6/57 (10%)
Query: 1579 RGEKKKKKKKKK------KKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKK 1629
R EK+KKK KK+ K +KKK +++KK+++ KK+K KK KKKKK KKK +
Sbjct: 150 RKEKQKKKSKKEWKERKEKVEKKKAERQKKREENLKKRKDDKKNKKKKKAKKKGRIL 206
Score = 50.0 bits (120), Expect = 2e-06
Identities = 26/59 (44%), Positives = 40/59 (67%), Gaps = 4/59 (6%)
Query: 1573 LARREGRGEKKKKKKKKKKKKKKKKKKKKKKKK----KYKKKKKKKKKKKKKKKKKKKK 1627
L R+E + +K KK+ K++K+K +KKK +++KK+ K +K KK KKKKK KKK +
Sbjct: 148 LKRKEKQKKKSKKEWKERKEKVEKKKAERQKKREENLKKRKDDKKNKKKKKAKKKGRIL 206
Score = 45.8 bits (109), Expect = 5e-05
Identities = 30/135 (22%), Positives = 58/135 (42%), Gaps = 25/135 (18%)
Query: 1518 KKSLQEVRQAVKGLIVMSKELEEINTSIMFGKIPQAWASKSYPSLKPLGSYIVDLLARRE 1577
K +EV+ + +E +I+F K+ +A DL +++
Sbjct: 37 KSEAEEVKNEENKSKKKAAPIENAEGNIVFSKV--EFADGEQAK--------KDLKLKKK 86
Query: 1578 GRGEKK---------KKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKK------KK 1622
+ +K + +KKK ++ + K + ++K+K+ K K + K K KK
Sbjct: 87 KKKKKTDYKQLLKKLEARKKKLEELDEDKAAEIEEKEKWTKALAKAEGVKVKDDEKLLKK 146
Query: 1623 KKKKKKKKKKKYSRE 1637
K+K+K+KKK +E
Sbjct: 147 ALKRKEKQKKKSKKE 161
Score = 43.8 bits (104), Expect = 2e-04
Identities = 25/62 (40%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 1580 GEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKK--KKKKKKKKKKKKKKKKKKKKYSRE 1637
GE+ KK K KKKKKKKK K+ KK + +KKK + + K + ++K+K K E
Sbjct: 74 GEQAKKDLKLKKKKKKKKTDYKQLLKKLEARKKKLEELDEDKAAEIEEKEKWTKALAKAE 133
Query: 1638 GG 1639
G
Sbjct: 134 GV 135
Score = 41.1 bits (97), Expect = 0.002
Identities = 16/51 (31%), Positives = 36/51 (70%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKK 1631
E++++K++++K +KK+K+K+ KKK+ +K + ++ K ++ K KKK +
Sbjct: 9 EQRRRKREQRKARKKQKRKEAKKKEDAQKSEAEEVKNEENKSKKKAAPIEN 59
Score = 40.4 bits (95), Expect = 0.004
Identities = 16/55 (29%), Positives = 37/55 (67%)
Query: 1585 KKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGG 1639
+++++K++++K +KK+K+K+ K K+ +K + ++ K ++ K KKK + EG
Sbjct: 9 EQRRRKREQRKARKKQKRKEAKKKEDAQKSEAEEVKNEENKSKKKAAPIENAEGN 63
Score = 39.6 bits (93), Expect = 0.005
Identities = 15/51 (29%), Positives = 36/51 (70%)
Query: 1582 KKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKK 1632
+++++K++++K +KK+K+K+ KKK+ +K + ++ K ++ K KKK +
Sbjct: 9 EQRRRKREQRKARKKQKRKEAKKKEDAQKSEAEEVKNEENKSKKKAAPIEN 59
Score = 39.6 bits (93), Expect = 0.006
Identities = 15/53 (28%), Positives = 35/53 (66%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
++++K++++K +KK+K+K+ KKK+ K + ++ K ++ K KKK + +
Sbjct: 10 QRRRKREQRKARKKQKRKEAKKKEDAQKSEAEEVKNEENKSKKKAAPIENAEG 62
Score = 39.2 bits (92), Expect = 0.008
Identities = 15/51 (29%), Positives = 35/51 (68%)
Query: 1583 KKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
+++++K++++K +KK+K+K+ KKK +K + ++ K ++ K KKK +
Sbjct: 9 EQRRRKREQRKARKKQKRKEAKKKEDAQKSEAEEVKNEENKSKKKAAPIEN 59
Score = 38.8 bits (91), Expect = 0.010
Identities = 18/62 (29%), Positives = 36/62 (58%), Gaps = 5/62 (8%)
Query: 1571 DLLARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKK 1630
L RR +K++++K +KK+K+K+ KKK+ +K + ++ K ++ K KKK + +
Sbjct: 7 LLEQRR-----RKREQRKARKKQKRKEAKKKEDAQKSEAEEVKNEENKSKKKAAPIENAE 61
Query: 1631 KK 1632
Sbjct: 62 GN 63
Score = 38.1 bits (89), Expect = 0.018
Identities = 15/55 (27%), Positives = 35/55 (63%)
Query: 1586 KKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGG 1640
+++++K++++K +KK+K+K+ KK+ +K + ++ K ++ K KKK G
Sbjct: 9 EQRRRKREQRKARKKQKRKEAKKKEDAQKSEAEEVKNEENKSKKKAAPIENAEGN 63
Score = 38.1 bits (89), Expect = 0.019
Identities = 18/60 (30%), Positives = 36/60 (60%)
Query: 1577 EGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSR 1636
E R K++++K +KK+K+K+ KKK+ +K ++ K ++ K KKK + + +S+
Sbjct: 9 EQRRRKREQRKARKKQKRKEAKKKEDAQKSEAEEVKNEENKSKKKAAPIENAEGNIVFSK 68
Score = 34.6 bits (80), Expect = 0.28
Identities = 11/45 (24%), Positives = 30/45 (66%)
Query: 1601 KKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGGGGEKE 1645
+++++K +++K +KK+K+K+ KKK+ +K + + + +K+
Sbjct: 9 EQRRRKREQRKARKKQKRKEAKKKEDAQKSEAEEVKNEENKSKKK 53
Score = 34.2 bits (79), Expect = 0.36
Identities = 16/38 (42%), Positives = 22/38 (57%)
Query: 1569 IVDLLARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKK 1606
+ A R+ + E+ KK+K KK KKKKK KKK +
Sbjct: 169 VEKKKAERQKKREENLKKRKDDKKNKKKKKAKKKGRIL 206
Score = 33.8 bits (78), Expect = 0.41
Identities = 12/46 (26%), Positives = 30/46 (65%)
Query: 1600 KKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGGGGEKE 1645
+++++K+ ++K +KK+K+K+ KKK+ +K + ++ E +K
Sbjct: 9 EQRRRKREQRKARKKQKRKEAKKKEDAQKSEAEEVKNEENKSKKKA 54
Score = 32.3 bits (74), Expect = 1.4
Identities = 11/42 (26%), Positives = 29/42 (69%)
Query: 1609 KKKKKKKKKKKKKKKKKKKKKKKKKYSREGGGGGEKELVQKN 1650
+++++K++++K +KK+K+K+ KKK+ +++ K K+
Sbjct: 9 EQRRRKREQRKARKKQKRKEAKKKEDAQKSEAEEVKNEENKS 50
>gnl|CDD|237753 PRK14552, PRK14552, C/D box methylation guide ribonucleoprotein
complex aNOP56 subunit; Provisional.
Length = 414
Score = 60.8 bits (148), Expect = 3e-09
Identities = 26/54 (48%), Positives = 41/54 (75%)
Query: 1580 GEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
G++ K++ K+ ++ K+K K KKK+ +KK +K+KKKKK+KKK KK+KKK +K
Sbjct: 361 GDELKEELNKRIEEIKEKYPKPPKKKREEKKPQKRKKKKKRKKKGKKRKKKGRK 414
Score = 55.7 bits (135), Expect = 1e-07
Identities = 22/49 (44%), Positives = 35/49 (71%)
Query: 1593 KKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGGG 1641
K++ K+ ++ K+KY K KKK+++KK +K+KKKKK+KKK R+ G
Sbjct: 365 KEELNKRIEEIKEKYPKPPKKKREEKKPQKRKKKKKRKKKGKKRKKKGR 413
Score = 43.0 bits (102), Expect = 0.001
Identities = 16/48 (33%), Positives = 30/48 (62%)
Query: 1597 KKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGGGGEK 1644
K++ K+ ++ K+K K KKK+++KK +K+KKKKK+ + +
Sbjct: 365 KEELNKRIEEIKEKYPKPPKKKREEKKPQKRKKKKKRKKKGKKRKKKG 412
Score = 33.4 bits (77), Expect = 1.2
Identities = 14/44 (31%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 1604 KKKYKKKKK--KKKKKKKKKKKKKKKKKKKKKYSREGGGGGEKE 1645
K++ K+ + K+K K KKK+++KK +K+K ++ G+K
Sbjct: 365 KEELNKRIEEIKEKYPKPPKKKREEKKPQKRKKKKKRKKKGKKR 408
Score = 30.3 bits (69), Expect = 9.2
Identities = 14/45 (31%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 1603 KKKKYKKKKKKKKKKKKKKKKKKKKKK--KKKKYSREGGGGGEKE 1645
K++ K+ ++ K+K K KKK+++KK K+KK + G +++
Sbjct: 365 KEELNKRIEEIKEKYPKPPKKKREEKKPQKRKKKKKRKKKGKKRK 409
>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3. This protein,
which interacts with both microtubules and TRAF3 (tumour
necrosis factor receptor-associated factor 3), is
conserved from worms to humans. The N-terminal region is
the microtubule binding domain and is well-conserved; the
C-terminal 100 residues, also well-conserved, constitute
the coiled-coil region which binds to TRAF3. The central
region of the protein is rich in lysine and glutamic acid
and carries KKE motifs which may also be necessary for
tubulin-binding, but this region is the least
well-conserved.
Length = 506
Score = 59.9 bits (145), Expect = 6e-09
Identities = 22/58 (37%), Positives = 44/58 (75%)
Query: 1576 REGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
G+ E+K+K++ K++KKKKK+K K++ K + K++ K+K+ K+K+K+K+KK ++ +
Sbjct: 101 ESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPR 158
Score = 57.2 bits (138), Expect = 5e-08
Identities = 24/57 (42%), Positives = 44/57 (77%)
Query: 1577 EGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
E + E K+++K+K++ K++KKKKK+K K+ K +K K++ K+K+ K+K+K+K+KK
Sbjct: 97 EPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKK 153
Score = 57.2 bits (138), Expect = 5e-08
Identities = 22/70 (31%), Positives = 46/70 (65%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGG 1640
K + K+++K+K++ K++KKKKK+K K++ K +K K++ K+K+ K+K+K+K +
Sbjct: 98 PKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEP 157
Query: 1641 GGEKELVQKN 1650
+E ++
Sbjct: 158 RDREEEKKRE 167
Score = 56.4 bits (136), Expect = 8e-08
Identities = 22/61 (36%), Positives = 45/61 (73%)
Query: 1577 EGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSR 1636
+ K+++K+K++ K++KKKKK+K K++ +K K++ K+K+ K+K+K+K+KK + R
Sbjct: 99 KNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPR 158
Query: 1637 E 1637
+
Sbjct: 159 D 159
Score = 56.0 bits (135), Expect = 1e-07
Identities = 22/69 (31%), Positives = 47/69 (68%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGG 1640
E K + K+++K+K++ K++KKKKK+ K++ K +K K++ K+K+ K+K+K+ ++
Sbjct: 97 EPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEE 156
Query: 1641 GGEKELVQK 1649
++E +K
Sbjct: 157 PRDREEEKK 165
Score = 55.3 bits (133), Expect = 2e-07
Identities = 22/74 (29%), Positives = 46/74 (62%)
Query: 1572 LLARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKK 1631
+ + + K+++K+K++ K++KKKKK+K ++ K +K K++ K+K+ K+K+K+
Sbjct: 90 AKTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKE 149
Query: 1632 KKYSREGGGGGEKE 1645
K+ E E+E
Sbjct: 150 KEKKVEEPRDREEE 163
Score = 55.3 bits (133), Expect = 2e-07
Identities = 20/64 (31%), Positives = 45/64 (70%)
Query: 1575 RREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKY 1634
+ E + +++ K++KKKKK+K K++ K +K K+ K+K+ K+K+K+K+KK ++ + +++
Sbjct: 104 KEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDREEE 163
Query: 1635 SREG 1638
+
Sbjct: 164 KKRE 167
Score = 54.9 bits (132), Expect = 2e-07
Identities = 24/68 (35%), Positives = 44/68 (64%), Gaps = 4/68 (5%)
Query: 1574 ARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKK----KKKK 1629
+E E+KKKKK+K K++ K +K K++ K+K K+K+K+K+KK ++ + KK++
Sbjct: 108 KEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDREEEKKRE 167
Query: 1630 KKKKYSRE 1637
+ + SR
Sbjct: 168 RVRAKSRP 175
Score = 53.0 bits (127), Expect = 1e-06
Identities = 21/67 (31%), Positives = 40/67 (59%)
Query: 1571 DLLARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKK 1630
D +R +G K K K K+ K + K+++K+ ++ K++KKKKK+K K++ K +K
Sbjct: 74 DEAVKRVEKGGSKGPAAKTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKP 133
Query: 1631 KKKYSRE 1637
K++ +
Sbjct: 134 KEEAKEK 140
Score = 52.2 bits (125), Expect = 2e-06
Identities = 24/78 (30%), Positives = 46/78 (58%), Gaps = 7/78 (8%)
Query: 1575 RREGRGEKKKKKKKKKKKKKKKKK-------KKKKKKKKYKKKKKKKKKKKKKKKKKKKK 1627
+E EK+ K+K+K+K+KK ++ KK+++ + + KK KKK KKK+ +
Sbjct: 133 PKEEAKEKRPPKEKEKEKEKKVEEPRDREEEKKRERVRAKSRPKKPPKKKPPNKKKEPPE 192
Query: 1628 KKKKKKYSREGGGGGEKE 1645
++K+++ +RE G +E
Sbjct: 193 EEKQRQAAREAVKGKPEE 210
Score = 51.0 bits (122), Expect = 4e-06
Identities = 21/76 (27%), Positives = 44/76 (57%)
Query: 1575 RREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKY 1634
R EK+K+KK ++ + ++++KK+++ + K + KK KKK KKK+ +++K+++
Sbjct: 141 RPPKEKEKEKEKKVEEPRDREEEKKRERVRAKSRPKKPPKKKPPNKKKEPPEEEKQRQAA 200
Query: 1635 SREGGGGGEKELVQKN 1650
G E+ V +
Sbjct: 201 REAVKGKPEEPDVNEE 216
Score = 51.0 bits (122), Expect = 4e-06
Identities = 21/69 (30%), Positives = 42/69 (60%)
Query: 1569 IVDLLARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKK 1628
V + + +G K K K+ K + K+++K+K++ ++KKKKK+K K++ K +K K+
Sbjct: 76 AVKRVEKGGSKGPAAKTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKE 135
Query: 1629 KKKKKYSRE 1637
+ K+K +
Sbjct: 136 EAKEKRPPK 144
Score = 50.7 bits (121), Expect = 5e-06
Identities = 19/62 (30%), Positives = 41/62 (66%)
Query: 1576 REGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYS 1635
+ + K+ K + K+++K+K++ K++KK KK+K K++ K +K K++ K+K+ K+
Sbjct: 88 PAAKTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKE 147
Query: 1636 RE 1637
+E
Sbjct: 148 KE 149
Score = 49.5 bits (118), Expect = 1e-05
Identities = 16/67 (23%), Positives = 39/67 (58%)
Query: 1574 ARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
+ + ++K+KK ++ + ++++KK+++ + K KK KKK KKK+ +++K+++
Sbjct: 141 RPPKEKEKEKEKKVEEPRDREEEKKRERVRAKSRPKKPPKKKPPNKKKEPPEEEKQRQAA 200
Query: 1634 YSREGGG 1640
G
Sbjct: 201 REAVKGK 207
Score = 49.1 bits (117), Expect = 2e-05
Identities = 19/63 (30%), Positives = 44/63 (69%)
Query: 1575 RREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKY 1634
+ E + K K++ K+K+ K+K+K+K+KK ++ + ++++KK+++ + K + KK KKK
Sbjct: 125 KEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDREEEKKRERVRAKSRPKKPPKKKPP 184
Query: 1635 SRE 1637
+++
Sbjct: 185 NKK 187
Score = 45.3 bits (107), Expect = 2e-04
Identities = 19/63 (30%), Positives = 35/63 (55%)
Query: 1587 KKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGGGGEKEL 1646
K+ +K K K K K+ K + K+++K+K++ K++KKKKK+K ++E
Sbjct: 78 KRVEKGGSKGPAAKTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEA 137
Query: 1647 VQK 1649
+K
Sbjct: 138 KEK 140
Score = 45.3 bits (107), Expect = 3e-04
Identities = 19/61 (31%), Positives = 36/61 (59%)
Query: 1585 KKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGGGGEK 1644
K+ +K K K K K+ K + K+++K+K++ K++KKKKK+K K+ ++ E
Sbjct: 78 KRVEKGGSKGPAAKTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEA 137
Query: 1645 E 1645
+
Sbjct: 138 K 138
Score = 44.1 bits (104), Expect = 5e-04
Identities = 17/71 (23%), Positives = 40/71 (56%)
Query: 1575 RREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKY 1634
+ E +++++KK+++ + K + KK KKK KKK+ +++K+++ ++ K K ++
Sbjct: 153 KVEEPRDREEEKKRERVRAKSRPKKPPKKKPPNKKKEPPEEEKQRQAAREAVKGKPEEPD 212
Query: 1635 SREGGGGGEKE 1645
E E +
Sbjct: 213 VNEEREKEEDD 223
Score = 43.7 bits (103), Expect = 7e-04
Identities = 16/77 (20%), Positives = 39/77 (50%)
Query: 1574 ARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
E R +++KK+++ + K + KK KKK KK+ +++K+++ ++ K K ++
Sbjct: 153 KVEEPRDREEEKKRERVRAKSRPKKPPKKKPPNKKKEPPEEEKQRQAAREAVKGKPEEPD 212
Query: 1634 YSREGGGGGEKELVQKN 1650
+ E + ++
Sbjct: 213 VNEEREKEEDDGKDRET 229
Score = 41.4 bits (97), Expect = 0.004
Identities = 17/57 (29%), Positives = 31/57 (54%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSRE 1637
E K + K+ +K K K K K+ K + K+++K+K++ K++KKKK +
Sbjct: 68 ESKLSSDEAVKRVEKGGSKGPAAKTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKP 124
Score = 38.7 bits (90), Expect = 0.025
Identities = 14/56 (25%), Positives = 29/56 (51%)
Query: 1578 GRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
+ + K + K+ +K K K K+ K + K+++K+K++ K++KKK
Sbjct: 64 AKCAESKLSSDEAVKRVEKGGSKGPAAKTKPAKEPKNESGKEEEKEKEQVKEEKKK 119
Score = 36.0 bits (83), Expect = 0.17
Identities = 14/61 (22%), Positives = 32/61 (52%)
Query: 1576 REGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYS 1635
R KK KKK KKK+ +++K+++ + K K ++ ++++K++ K + +
Sbjct: 170 RAKSRPKKPPKKKPPNKKKEPPEEEKQRQAAREAVKGKPEEPDVNEEREKEEDDGKDRET 229
Query: 1636 R 1636
Sbjct: 230 T 230
Score = 32.6 bits (74), Expect = 1.9
Identities = 14/59 (23%), Positives = 28/59 (47%)
Query: 1587 KKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGGGGEKE 1645
+ K + K+ +K K K K K+ K + K+++K+K++ K ++ KE
Sbjct: 68 ESKLSSDEAVKRVEKGGSKGPAAKTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKE 126
>gnl|CDD|218737 pfam05764, YL1, YL1 nuclear protein. The proteins in this family are
designated YL1. These proteins have been shown to be
DNA-binding and may be a transcription factor.
Length = 238
Score = 57.8 bits (140), Expect = 7e-09
Identities = 20/56 (35%), Positives = 29/56 (51%)
Query: 1576 REGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKK 1631
+E + E++ KKKK+ K K K+ KKKKKK K K + KKK ++
Sbjct: 76 KELQREERLKKKKRVKTKAYKEPTKKKKKKDPTAAKSPKAAAPRPKKKSERISWAP 131
Score = 55.5 bits (134), Expect = 5e-08
Identities = 20/53 (37%), Positives = 31/53 (58%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
E +K+ +++++ KKKK+ K K K+ KKKKKK K K + KKK +
Sbjct: 73 EGEKELQREERLKKKKRVKTKAYKEPTKKKKKKDPTAAKSPKAAAPRPKKKSE 125
Score = 55.1 bits (133), Expect = 6e-08
Identities = 20/53 (37%), Positives = 31/53 (58%)
Query: 1580 GEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKK 1632
GEK+ +++++ KKKK+ K K K+ K KKKK K K + KKK ++
Sbjct: 74 GEKELQREERLKKKKRVKTKAYKEPTKKKKKKDPTAAKSPKAAAPRPKKKSER 126
Score = 53.2 bits (128), Expect = 3e-07
Identities = 20/56 (35%), Positives = 27/56 (48%)
Query: 1575 RREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKK 1630
+ R E+ KKKK+ K K K+ KKKKKK K K + KKK ++
Sbjct: 76 KELQREERLKKKKRVKTKAYKEPTKKKKKKDPTAAKSPKAAAPRPKKKSERISWAP 131
Score = 53.2 bits (128), Expect = 3e-07
Identities = 19/52 (36%), Positives = 29/52 (55%)
Query: 1586 KKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSRE 1637
+K+ +++++ KKKK+ K K YK+ KKKKKK K K + K E
Sbjct: 74 GEKELQREERLKKKKRVKTKAYKEPTKKKKKKDPTAAKSPKAAAPRPKKKSE 125
Score = 53.2 bits (128), Expect = 3e-07
Identities = 20/57 (35%), Positives = 30/57 (52%)
Query: 1577 EGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
EG E +++++ KKKK+ K K K+ KKK KK K K + KKK ++
Sbjct: 73 EGEKELQREERLKKKKRVKTKAYKEPTKKKKKKDPTAAKSPKAAAPRPKKKSERISW 129
Score = 52.4 bits (126), Expect = 4e-07
Identities = 17/59 (28%), Positives = 29/59 (49%)
Query: 1579 RGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSRE 1637
+ +++++ KKKK+ K K K+ KKKK K K K + KKK ++ +
Sbjct: 76 KELQREERLKKKKRVKTKAYKEPTKKKKKKDPTAAKSPKAAAPRPKKKSERISWAPTLL 134
Score = 52.0 bits (125), Expect = 7e-07
Identities = 22/61 (36%), Positives = 33/61 (54%)
Query: 1577 EGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSR 1636
E E++ +K+ +++++ KKKK+ K K K KKKKKK K K + KKK R
Sbjct: 67 ESDDEEEGEKELQREERLKKKKRVKTKAYKEPTKKKKKKDPTAAKSPKAAAPRPKKKSER 126
Query: 1637 E 1637
Sbjct: 127 I 127
Score = 51.6 bits (124), Expect = 9e-07
Identities = 19/59 (32%), Positives = 26/59 (44%)
Query: 1575 RREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
+RE R +KKK+ K K K+ KKKKKK K + KKK ++
Sbjct: 79 QREERLKKKKRVKTKAYKEPTKKKKKKDPTAAKSPKAAAPRPKKKSERISWAPTLLDSP 137
Score = 43.1 bits (102), Expect = 5e-04
Identities = 22/93 (23%), Positives = 40/93 (43%), Gaps = 29/93 (31%)
Query: 1574 ARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYK------------------------- 1608
A +E +KKKK K K + KKK ++
Sbjct: 94 AYKEPTKKKKKKDPTAAKSPKAAAPRPKKKSERISWAPTLLDSPRRKSSRSSTVQNKEAT 153
Query: 1609 ----KKKKKKKKKKKKKKKKKKKKKKKKKYSRE 1637
K+++ ++KK + K +K+K+KKK+K+ ++E
Sbjct: 154 HERLKEREIRRKKIQAKARKRKEKKKEKELTQE 186
Score = 37.4 bits (87), Expect = 0.035
Identities = 16/48 (33%), Positives = 26/48 (54%)
Query: 1597 KKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGGGGEK 1644
+K+ +++++ KKKK+ K K K+ KKKKKK S + K
Sbjct: 74 GEKELQREERLKKKKRVKTKAYKEPTKKKKKKDPTAAKSPKAAAPRPK 121
Score = 36.6 bits (85), Expect = 0.074
Identities = 15/76 (19%), Positives = 35/76 (46%), Gaps = 12/76 (15%)
Query: 1571 DLLARREGRGEKKKKKKKKKKKKKKKKKK------------KKKKKKKYKKKKKKKKKKK 1618
D A + + + KKK ++ + K+ +++ K+++ ++K
Sbjct: 106 DPTAAKSPKAAAPRPKKKSERISWAPTLLDSPRRKSSRSSTVQNKEATHERLKEREIRRK 165
Query: 1619 KKKKKKKKKKKKKKKY 1634
K + K +K+K+KKK+
Sbjct: 166 KIQAKARKRKEKKKEK 181
Score = 32.7 bits (75), Expect = 1.3
Identities = 20/89 (22%), Positives = 40/89 (44%), Gaps = 29/89 (32%)
Query: 1575 RREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKK----------------- 1617
R+ R + K+ ++ K+++ ++KK + K +K+K+KKK+K
Sbjct: 139 RKSSRSSTVQNKEATHERLKEREIRRKKIQAKARKRKEKKKEKELTQEERLAEAKETERI 198
Query: 1618 ------------KKKKKKKKKKKKKKKKY 1634
++KKK K + KK++ Y
Sbjct: 199 NLKSLERYEEQEEEKKKAKIQALKKRRLY 227
Score = 32.4 bits (74), Expect = 1.8
Identities = 19/77 (24%), Positives = 40/77 (51%), Gaps = 18/77 (23%)
Query: 1572 LLARREGRGEKKKKKKKKKKKKKKKKKKKK------------------KKKKKYKKKKKK 1613
R + R ++KK + K +K+K+KKK+K+ K ++Y++++++
Sbjct: 153 THERLKEREIRRKKIQAKARKRKEKKKEKELTQEERLAEAKETERINLKSLERYEEQEEE 212
Query: 1614 KKKKKKKKKKKKKKKKK 1630
KKK K + KK++ +
Sbjct: 213 KKKAKIQALKKRRLYEG 229
>gnl|CDD|219838 pfam08432, DUF1742, Fungal protein of unknown function (DUF1742).
This is a family of fungal proteins of unknown function.
Length = 182
Score = 56.6 bits (137), Expect = 9e-09
Identities = 26/64 (40%), Positives = 35/64 (54%)
Query: 1576 REGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYS 1635
E KK+ ++K+K K KKKK KKKK K K KK KK K +KK +K+ + K + S
Sbjct: 69 EEIEKVKKEYEEKQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAEDKLEDLTKS 128
Query: 1636 REGG 1639
Sbjct: 129 YSET 132
Score = 55.1 bits (133), Expect = 2e-08
Identities = 30/63 (47%), Positives = 38/63 (60%), Gaps = 6/63 (9%)
Query: 1581 EKKKKKK--KKKKKKKKK----KKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKY 1634
E KKKKK ++ +K KK K+K K KKKK KKKK K K KK KK K +KK +K+
Sbjct: 59 EAKKKKKELAEEIEKVKKEYEEKQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEA 118
Query: 1635 SRE 1637
+
Sbjct: 119 EDK 121
Score = 53.9 bits (130), Expect = 7e-08
Identities = 24/73 (32%), Positives = 33/73 (45%)
Query: 1561 SLKPLGSYIVDLLARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKK 1620
K L I + E + + K KKKK KKKK K K KK KK +KK +K+ + K
Sbjct: 63 KKKELAEEIEKVKKEYEEKQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAEDKL 122
Query: 1621 KKKKKKKKKKKKK 1633
+ K +
Sbjct: 123 EDLTKSYSETLST 135
Score = 52.4 bits (126), Expect = 2e-07
Identities = 23/57 (40%), Positives = 35/57 (61%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSRE 1637
++ +K KK+ ++K+K K KKKK KK K K K KK KK K +KK +K+ + +
Sbjct: 68 AEEIEKVKKEYEEKQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAEDKLED 124
Score = 50.1 bits (120), Expect = 2e-06
Identities = 29/62 (46%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 1590 KKKKKKKKKKKKKKKKKY-KKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGGGGEKELVQ 1648
KKKKK+ ++ +K KK+Y +K+K K KKKK KKKK K K KK K + EKE
Sbjct: 61 KKKKKELAEEIEKVKKEYEEKQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAED 120
Query: 1649 KN 1650
K
Sbjct: 121 KL 122
Score = 48.9 bits (117), Expect = 3e-06
Identities = 19/63 (30%), Positives = 28/63 (44%)
Query: 1573 LARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKK 1632
++ KKKK KKKK K K KK KK K + K +K+ + K + K +
Sbjct: 78 YEEKQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAEDKLEDLTKSYSETLSTLS 137
Query: 1633 KYS 1635
+
Sbjct: 138 ELK 140
Score = 47.8 bits (114), Expect = 8e-06
Identities = 19/62 (30%), Positives = 30/62 (48%)
Query: 1574 ARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
+ + + KKKK K K KK KK K +KK +K + K + K + + K +K
Sbjct: 84 WKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAEDKLEDLTKSYSETLSTLSELKPRK 143
Query: 1634 YS 1635
Y+
Sbjct: 144 YA 145
Score = 38.5 bits (90), Expect = 0.012
Identities = 13/60 (21%), Positives = 25/60 (41%)
Query: 1568 YIVDLLARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKK 1627
+ ++ + + K KK KK K +KK +K+ + K K + + K +K
Sbjct: 84 WKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAEDKLEDLTKSYSETLSTLSELKPRK 143
>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional.
Length = 482
Score = 59.2 bits (144), Expect = 1e-08
Identities = 25/67 (37%), Positives = 46/67 (68%)
Query: 1579 RGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREG 1638
G KK KK KK +K +KK++++KK+K KK KKK+++++++K+KK+++K++ E
Sbjct: 403 TGSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEA 462
Query: 1639 GGGGEKE 1645
E+E
Sbjct: 463 EEEKEEE 469
Score = 59.2 bits (144), Expect = 1e-08
Identities = 23/68 (33%), Positives = 47/68 (69%)
Query: 1578 GRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSRE 1637
G + KK KK +K +KK++++KK+KKK KKK+++++++K+KK+++K++++ E
Sbjct: 404 GSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAE 463
Query: 1638 GGGGGEKE 1645
E+E
Sbjct: 464 EEKEEEEE 471
Score = 58.8 bits (143), Expect = 2e-08
Identities = 21/75 (28%), Positives = 51/75 (68%)
Query: 1570 VDLLARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKK 1629
++ L + +K KK +K +KK++++KK+KKKK KKK+++++++K+KK+++K+++
Sbjct: 399 IEFLTGSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEE 458
Query: 1630 KKKKYSREGGGGGEK 1644
+++ + +K
Sbjct: 459 EEEAEEEKEEEEEKK 473
Score = 57.2 bits (139), Expect = 5e-08
Identities = 24/68 (35%), Positives = 46/68 (67%)
Query: 1582 KKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGGG 1641
KK KK KK +K +KK++++KK+ KKK KKK+++++++K+KK+++K+ E
Sbjct: 405 SKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEE 464
Query: 1642 GEKELVQK 1649
++E +K
Sbjct: 465 EKEEEEEK 472
Score = 57.2 bits (139), Expect = 5e-08
Identities = 23/70 (32%), Positives = 47/70 (67%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGG 1640
+K KK KK +K +KK++++KK+KK K KKK+++++++K+KK+++K+++
Sbjct: 406 KKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEE 465
Query: 1641 GGEKELVQKN 1650
E+E +K
Sbjct: 466 KEEEEEKKKK 475
Score = 53.8 bits (130), Expect = 6e-07
Identities = 20/57 (35%), Positives = 47/57 (82%)
Query: 1574 ARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKK 1630
A ++ EKK+KKKK KKK+++++++K+KK ++K++++++ +++K+++++KKKK
Sbjct: 419 AEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEEKKKK 475
Score = 53.8 bits (130), Expect = 6e-07
Identities = 23/63 (36%), Positives = 39/63 (61%)
Query: 1587 KKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGGGGEKEL 1646
KK KK KK +K +KK+ ++KK+KKKK KKK+++++++K+K E E+
Sbjct: 404 GSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAE 463
Query: 1647 VQK 1649
+K
Sbjct: 464 EEK 466
Score = 53.4 bits (129), Expect = 8e-07
Identities = 20/64 (31%), Positives = 52/64 (81%)
Query: 1569 IVDLLARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKK 1628
I ++ + E + E++KK+KKKK KKK+++++++K+ K+++K++++++ +++K+++++
Sbjct: 412 IKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEE 471
Query: 1629 KKKK 1632
KKKK
Sbjct: 472 KKKK 475
Score = 52.6 bits (127), Expect = 1e-06
Identities = 19/63 (30%), Positives = 48/63 (76%)
Query: 1567 SYIVDLLARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKK 1626
IV+ ++ +K+KKKK KKK+++++++K+KK+ +K++++++ +++K+++++K
Sbjct: 413 KKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEEK 472
Query: 1627 KKK 1629
KKK
Sbjct: 473 KKK 475
Score = 52.2 bits (126), Expect = 2e-06
Identities = 18/65 (27%), Positives = 50/65 (76%)
Query: 1569 IVDLLARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKK 1628
+ + + + +++KK+KKKK KKK+++++++K KK+++K++++++ +++K++++
Sbjct: 411 KIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEE 470
Query: 1629 KKKKK 1633
+KKKK
Sbjct: 471 EKKKK 475
Score = 47.2 bits (113), Expect = 6e-05
Identities = 20/58 (34%), Positives = 34/58 (58%)
Query: 1593 KKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGGGGEKELVQKN 1650
KK KK KK + +KK++++KK+KKKK KKK++++ + EKE ++
Sbjct: 404 GSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEE 461
Score = 31.8 bits (73), Expect = 3.4
Identities = 11/44 (25%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 1602 KKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGGGGEKE 1645
+++ ++ KK KK KK +K +KK++++K +E
Sbjct: 396 EEEIEFLTGSKKATKKIKKIVEKAEKKREEEK--KEKKKKAFAG 437
>gnl|CDD|219124 pfam06658, DUF1168, Protein of unknown function (DUF1168). This
family consists of several hypothetical eukaryotic
proteins of unknown function.
Length = 142
Score = 54.7 bits (132), Expect = 2e-08
Identities = 29/70 (41%), Positives = 49/70 (70%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGG 1640
EK KK+ + ++ ++K+++KK+K ++K KK+ K++KKK+KKKKKKK KK KK +EG
Sbjct: 57 EKWKKETEDEEFQQKREEKKRKDEEKTAKKRAKRQKKKQKKKKKKKAKKGNKKEEKEGSK 116
Query: 1641 GGEKELVQKN 1650
E+ ++
Sbjct: 117 SSEESSDEEE 126
Score = 53.9 bits (130), Expect = 3e-08
Identities = 27/60 (45%), Positives = 42/60 (70%)
Query: 1586 KKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGGGGEKE 1645
++K+++KK+K ++K KK+ K +KKK+KKKKKKK KK KK++K+ K S E E+
Sbjct: 69 QQKREEKKRKDEEKTAKKRAKRQKKKQKKKKKKKAKKGNKKEEKEGSKSSEESSDEEEEG 128
Score = 53.1 bits (128), Expect = 5e-08
Identities = 29/74 (39%), Positives = 45/74 (60%), Gaps = 3/74 (4%)
Query: 1575 RREG---RGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKK 1631
RRE +K KK+ + ++ ++K+++KK+K + K KK+ K++KKK+KKKKKKK KK
Sbjct: 46 RREYERLELMDEKWKKETEDEEFQQKREEKKRKDEEKTAKKRAKRQKKKQKKKKKKKAKK 105
Query: 1632 KKYSREGGGGGEKE 1645
E G E
Sbjct: 106 GNKKEEKEGSKSSE 119
Score = 52.0 bits (125), Expect = 2e-07
Identities = 27/65 (41%), Positives = 42/65 (64%), Gaps = 6/65 (9%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGG 1640
++K+++KK+K ++K KK+ K++KKK KKKKKKK KK KK++K+ K E
Sbjct: 69 QQKREEKKRKDEEKTAKKRAKRQKKKQKKKKKKKAKKGNKKEEKEGSKSS------EESS 122
Query: 1641 GGEKE 1645
E+E
Sbjct: 123 DEEEE 127
Score = 50.4 bits (121), Expect = 5e-07
Identities = 27/71 (38%), Positives = 45/71 (63%)
Query: 1579 RGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREG 1638
R EKK+K ++K KK+ K++KKK+KKKK KK KK KK++K+ K ++ +++ E
Sbjct: 72 REEKKRKDEEKTAKKRAKRQKKKQKKKKKKKAKKGNKKEEKEGSKSSEESSDEEEEGEED 131
Query: 1639 GGGGEKELVQK 1649
E+++K
Sbjct: 132 KQEEPVEIMEK 142
Score = 50.0 bits (120), Expect = 7e-07
Identities = 26/67 (38%), Positives = 47/67 (70%)
Query: 1583 KKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGGGG 1642
++K+++KK+K ++K KK+ K++K K+KKKKKKK KK KK++K+ K + S + G
Sbjct: 69 QQKREEKKRKDEEKTAKKRAKRQKKKQKKKKKKKAKKGNKKEEKEGSKSSEESSDEEEEG 128
Query: 1643 EKELVQK 1649
E++ ++
Sbjct: 129 EEDKQEE 135
Score = 40.0 bits (94), Expect = 0.002
Identities = 20/58 (34%), Positives = 39/58 (67%), Gaps = 1/58 (1%)
Query: 1575 RREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKK 1632
+R R +KKK+KKKKKKK KK KK++K+ K ++ ++++ ++ K+++ + +K
Sbjct: 86 KRAKR-QKKKQKKKKKKKAKKGNKKEEKEGSKSSEESSDEEEEGEEDKQEEPVEIMEK 142
Score = 36.6 bits (85), Expect = 0.028
Identities = 17/55 (30%), Positives = 37/55 (67%)
Query: 1574 ARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKK 1628
A+R+ + +KKKKKKK KK KK++K+ K ++ ++++ ++ K+++ + +K
Sbjct: 88 AKRQKKKQKKKKKKKAKKGNKKEEKEGSKSSEESSDEEEEGEEDKQEEPVEIMEK 142
>gnl|CDD|172341 PRK13808, PRK13808, adenylate kinase; Provisional.
Length = 333
Score = 55.3 bits (133), Expect = 1e-07
Identities = 26/71 (36%), Positives = 31/71 (43%)
Query: 1574 ARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
A++ + K KK KK KK KK K KK KK K K K K K K K KK
Sbjct: 238 AKKAAKTAAKAAKKAKKTAKKALKKAAKAVKKAAKKAAKAAAKAAKGAAKATKGKAKAKK 297
Query: 1634 YSREGGGGGEK 1644
+ + G K
Sbjct: 298 KAGKKAAAGSK 308
Score = 54.1 bits (130), Expect = 3e-07
Identities = 22/60 (36%), Positives = 25/60 (41%)
Query: 1574 ARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
A++ + K KK K K KK KKK K KK K K KK KK KK
Sbjct: 199 AKKAAKTPAAKSGAKKASAKAKSAAKKVSKKKAAKTAVSAKKAAKTAAKAAKKAKKTAKK 258
Score = 53.0 bits (127), Expect = 7e-07
Identities = 22/59 (37%), Positives = 25/59 (42%)
Query: 1574 ARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKK 1632
++ + K KK KKK K KK K K KK KK KK KK K KK
Sbjct: 211 GAKKASAKAKSAAKKVSKKKAAKTAVSAKKAAKTAAKAAKKAKKTAKKALKKAAKAVKK 269
Score = 52.6 bits (126), Expect = 9e-07
Identities = 24/75 (32%), Positives = 28/75 (37%), Gaps = 2/75 (2%)
Query: 1572 LLARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKK--KKKKKKKKKKKKKKKKKK 1629
L A +K K K KK K K KK KKK K KK K K K
Sbjct: 191 LAAVGAANAKKAAKTPAAKSGAKKASAKAKSAAKKVSKKKAAKTAVSAKKAAKTAAKAAK 250
Query: 1630 KKKKYSREGGGGGEK 1644
K KK +++ K
Sbjct: 251 KAKKTAKKALKKAAK 265
Score = 52.2 bits (125), Expect = 1e-06
Identities = 21/62 (33%), Positives = 24/62 (38%)
Query: 1579 RGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREG 1638
+ K KK K K KK KK K KK K KK KK K K K ++
Sbjct: 230 KAAKTAVSAKKAAKTAAKAAKKAKKTAKKALKKAAKAVKKAAKKAAKAAAKAAKGAAKAT 289
Query: 1639 GG 1640
G
Sbjct: 290 KG 291
Score = 52.2 bits (125), Expect = 1e-06
Identities = 22/65 (33%), Positives = 27/65 (41%)
Query: 1574 ARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
+ + + KK KKK K KK K K KK KK KK KK K KK K
Sbjct: 213 KKASAKAKSAAKKVSKKKAAKTAVSAKKAAKTAAKAAKKAKKTAKKALKKAAKAVKKAAK 272
Query: 1634 YSREG 1638
+ +
Sbjct: 273 KAAKA 277
Score = 51.8 bits (124), Expect = 1e-06
Identities = 24/65 (36%), Positives = 27/65 (41%)
Query: 1580 GEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGG 1639
+K KKK K KK K K K KK KK KK K KK KK K + +
Sbjct: 223 AKKVSKKKAAKTAVSAKKAAKTAAKAAKKAKKTAKKALKKAAKAVKKAAKKAAKAAAKAA 282
Query: 1640 GGGEK 1644
G K
Sbjct: 283 KGAAK 287
Score = 51.8 bits (124), Expect = 2e-06
Identities = 22/62 (35%), Positives = 24/62 (38%)
Query: 1583 KKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGGGG 1642
K KK K K KK KK K KK K KK KK K K K + + G
Sbjct: 233 KTAVSAKKAAKTAAKAAKKAKKTAKKALKKAAKAVKKAAKKAAKAAAKAAKGAAKATKGK 292
Query: 1643 EK 1644
K
Sbjct: 293 AK 294
Score = 51.4 bits (123), Expect = 2e-06
Identities = 23/68 (33%), Positives = 25/68 (36%)
Query: 1582 KKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGGG 1641
KK K K KK KK KK KK K KK KK K K K K K +
Sbjct: 239 KKAAKTAAKAAKKAKKTAKKALKKAAKAVKKAAKKAAKAAAKAAKGAAKATKGKAKAKKK 298
Query: 1642 GEKELVQK 1649
K+
Sbjct: 299 AGKKAAAG 306
Score = 51.4 bits (123), Expect = 2e-06
Identities = 23/76 (30%), Positives = 32/76 (42%)
Query: 1574 ARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
++++ KK K K KK KK KK KK K KK KK K K K
Sbjct: 227 SKKKAAKTAVSAKKAAKTAAKAAKKAKKTAKKALKKAAKAVKKAAKKAAKAAAKAAKGAA 286
Query: 1634 YSREGGGGGEKELVQK 1649
+ +G +K+ +K
Sbjct: 287 KATKGKAKAKKKAGKK 302
Score = 51.4 bits (123), Expect = 2e-06
Identities = 23/60 (38%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
Query: 1582 KKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKK--KKKKKYSREGG 1639
KK K K KK KKK K KK K K KK KK KK KK K ++
Sbjct: 212 AKKASAKAKSAAKKVSKKKAAKTAVSAKKAAKTAAKAAKKAKKTAKKALKKAAKAVKKAA 271
Score = 50.7 bits (121), Expect = 4e-06
Identities = 22/65 (33%), Positives = 25/65 (38%)
Query: 1574 ARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
A + G + K K KK KKK K K K K KK KK KK KK K
Sbjct: 207 AAKSGAKKASAKAKSAAKKVSKKKAAKTAVSAKKAAKTAAKAAKKAKKTAKKALKKAAKA 266
Query: 1634 YSREG 1638
+
Sbjct: 267 VKKAA 271
Score = 49.1 bits (117), Expect = 1e-05
Identities = 25/76 (32%), Positives = 31/76 (40%)
Query: 1574 ARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
A++ + K KK KK K K K K K K K KKK KK K K K
Sbjct: 256 AKKALKKAAKAVKKAAKKAAKAAAKAAKGAAKATKGKAKAKKKAGKKAAAGSKAKATAKA 315
Query: 1634 YSREGGGGGEKELVQK 1649
R G K++ +K
Sbjct: 316 PKRGAKGKKAKKVTKK 331
Score = 46.8 bits (111), Expect = 6e-05
Identities = 24/73 (32%), Positives = 27/73 (36%), Gaps = 2/73 (2%)
Query: 1574 ARREGRGEKKKKKK--KKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKK 1631
A + + KK KK KK K KK KK K K K K K K KKK KK
Sbjct: 245 AAKAAKKAKKTAKKALKKAAKAVKKAAKKAAKAAAKAAKGAAKATKGKAKAKKKAGKKAA 304
Query: 1632 KKYSREGGGGGEK 1644
+ K
Sbjct: 305 AGSKAKATAKAPK 317
Score = 45.3 bits (107), Expect = 2e-04
Identities = 29/103 (28%), Positives = 41/103 (39%), Gaps = 2/103 (1%)
Query: 1549 KIPQAWASKSYPSLKPLGSYIVDLLARREGRGEKKKKKKKKKKKKKKKKKKK--KKKKKK 1606
K+ + A+K+ S K + + +K KK K KK KK K K K
Sbjct: 225 KVSKKKAAKTAVSAKKAAKTAAKAAKKAKKTAKKALKKAAKAVKKAAKKAAKAAAKAAKG 284
Query: 1607 YKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGGGGEKELVQK 1649
K K K K KKK KK K K ++ G + + +K
Sbjct: 285 AAKATKGKAKAKKKAGKKAAAGSKAKATAKAPKRGAKGKKAKK 327
Score = 34.9 bits (80), Expect = 0.37
Identities = 15/52 (28%), Positives = 18/52 (34%)
Query: 1598 KKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGGGGEKELVQK 1649
KK K KK K K KK KKK K S + + +K
Sbjct: 200 KKAAKTPAAKSGAKKASAKAKSAAKKVSKKKAAKTAVSAKKAAKTAAKAAKK 251
>gnl|CDD|237035 PRK12280, rplW, 50S ribosomal protein L23; Reviewed.
Length = 158
Score = 52.1 bits (125), Expect = 2e-07
Identities = 24/62 (38%), Positives = 38/62 (61%), Gaps = 2/62 (3%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKK--KKKKKKKKKKKKKKKKKKKKKKKYSREG 1638
EK++K+ K+ ++K+ K KK+KK+K +KK +K KKK K K KK KK +++
Sbjct: 96 EKEQKEVSKETEEKEAIKAKKEKKEKKEKKVAEKLAKKKSTKTTKNTTKKATKKTTTKKE 155
Query: 1639 GG 1640
G
Sbjct: 156 EG 157
Score = 50.1 bits (120), Expect = 9e-07
Identities = 24/57 (42%), Positives = 33/57 (57%)
Query: 1577 EGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
E E ++K+ K KK+KK+KK+KK +K KKK K K KK KK KK++
Sbjct: 101 EVSKETEEKEAIKAKKEKKEKKEKKVAEKLAKKKSTKTTKNTTKKATKKTTTKKEEG 157
Score = 49.4 bits (118), Expect = 2e-06
Identities = 22/53 (41%), Positives = 31/53 (58%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
++K+ K KK+KK+KK+KK +K KK K K KK KK KK++ K
Sbjct: 106 TEEKEAIKAKKEKKEKKEKKVAEKLAKKKSTKTTKNTTKKATKKTTTKKEEGK 158
Score = 47.4 bits (113), Expect = 7e-06
Identities = 23/57 (40%), Positives = 32/57 (56%)
Query: 1574 ARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKK 1630
+E ++ K KK+KK+KK+KK +K KKK K K KK KK KK++ K
Sbjct: 102 VSKETEEKEAIKAKKEKKEKKEKKVAEKLAKKKSTKTTKNTTKKATKKTTTKKEEGK 158
>gnl|CDD|185429 PTZ00074, PTZ00074, 60S ribosomal protein L34; Provisional.
Length = 135
Score = 51.2 bits (123), Expect = 2e-07
Identities = 24/39 (61%), Positives = 29/39 (74%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKK 1619
E+K K+ K+K K+KK+KKKKKKKK KK KK KKKK
Sbjct: 97 EQKIVKQVLKEKAKQKKQKKKKKKKKKKKTSKKAAKKKK 135
Score = 50.5 bits (121), Expect = 5e-07
Identities = 24/40 (60%), Positives = 30/40 (75%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKK 1620
E++K K+ K+K K+KK+KKKKKKK KKK KK KKKK
Sbjct: 96 EEQKIVKQVLKEKAKQKKQKKKKKKKKKKKTSKKAAKKKK 135
Score = 50.1 bits (120), Expect = 5e-07
Identities = 23/34 (67%), Positives = 27/34 (79%)
Query: 1600 KKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
K+ K+K K+KK+KKKKKKKKKKK KK KKKK
Sbjct: 102 KQVLKEKAKQKKQKKKKKKKKKKKTSKKAAKKKK 135
Score = 49.7 bits (119), Expect = 8e-07
Identities = 23/34 (67%), Positives = 26/34 (76%)
Query: 1595 KKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKK 1628
K+ K+K K+KK KKKKKKKKKKK KK KKKK
Sbjct: 102 KQVLKEKAKQKKQKKKKKKKKKKKTSKKAAKKKK 135
Score = 49.7 bits (119), Expect = 9e-07
Identities = 22/34 (64%), Positives = 26/34 (76%)
Query: 1594 KKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKK 1627
K+ K+K K+KK+ KKKKKKKKKK KK KKKK
Sbjct: 102 KQVLKEKAKQKKQKKKKKKKKKKKTSKKAAKKKK 135
Score = 49.3 bits (118), Expect = 9e-07
Identities = 23/34 (67%), Positives = 26/34 (76%)
Query: 1598 KKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKK 1631
K+ K+K K KK+KKKKKKKKKKK KK KKKK
Sbjct: 102 KQVLKEKAKQKKQKKKKKKKKKKKTSKKAAKKKK 135
Score = 49.3 bits (118), Expect = 1e-06
Identities = 22/34 (64%), Positives = 26/34 (76%)
Query: 1589 KKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKK 1622
K+ K+K K+KK+KKKKK KKKKK KK KKKK
Sbjct: 102 KQVLKEKAKQKKQKKKKKKKKKKKTSKKAAKKKK 135
Score = 49.3 bits (118), Expect = 1e-06
Identities = 22/34 (64%), Positives = 26/34 (76%)
Query: 1590 KKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKK 1623
K+ K+K K+KK+KKKK KKKKKK KK KKKK
Sbjct: 102 KQVLKEKAKQKKQKKKKKKKKKKKTSKKAAKKKK 135
Score = 49.3 bits (118), Expect = 1e-06
Identities = 22/34 (64%), Positives = 26/34 (76%)
Query: 1597 KKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKK 1630
K+ K+K K+ K+KKKKKKKKKKK KK KKKK
Sbjct: 102 KQVLKEKAKQKKQKKKKKKKKKKKTSKKAAKKKK 135
Score = 48.9 bits (117), Expect = 1e-06
Identities = 22/34 (64%), Positives = 26/34 (76%)
Query: 1592 KKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKK 1625
K+ K+K K+KK+KK KKKKKKKK KK KKKK
Sbjct: 102 KQVLKEKAKQKKQKKKKKKKKKKKTSKKAAKKKK 135
Score = 48.9 bits (117), Expect = 1e-06
Identities = 22/34 (64%), Positives = 26/34 (76%)
Query: 1593 KKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKK 1626
K+ K+K K+KK+K KKKKKKKKK KK KKKK
Sbjct: 102 KQVLKEKAKQKKQKKKKKKKKKKKTSKKAAKKKK 135
Score = 48.9 bits (117), Expect = 2e-06
Identities = 22/34 (64%), Positives = 26/34 (76%)
Query: 1591 KKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKK 1624
K+ K+K K+KK+KKK KKKKKKK KK KKKK
Sbjct: 102 KQVLKEKAKQKKQKKKKKKKKKKKTSKKAAKKKK 135
Score = 48.5 bits (116), Expect = 2e-06
Identities = 22/34 (64%), Positives = 26/34 (76%)
Query: 1588 KKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKK 1621
K+ K+K K+KK+KKKKKK KKKK KK KKKK
Sbjct: 102 KQVLKEKAKQKKQKKKKKKKKKKKTSKKAAKKKK 135
Score = 48.5 bits (116), Expect = 2e-06
Identities = 22/34 (64%), Positives = 26/34 (76%)
Query: 1599 KKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKK 1632
K+ K+K +KK+KKKKKKKKKKK KK KKKK
Sbjct: 102 KQVLKEKAKQKKQKKKKKKKKKKKTSKKAAKKKK 135
Score = 48.5 bits (116), Expect = 2e-06
Identities = 22/34 (64%), Positives = 26/34 (76%)
Query: 1596 KKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKK 1629
K+ K+K K+K +KKKKKKKKKKK KK KKKK
Sbjct: 102 KQVLKEKAKQKKQKKKKKKKKKKKTSKKAAKKKK 135
Score = 40.4 bits (95), Expect = 0.001
Identities = 20/36 (55%), Positives = 26/36 (72%)
Query: 1569 IVDLLARREGRGEKKKKKKKKKKKKKKKKKKKKKKK 1604
IV + + + + +K+KKKKKKKKKKK KK KKKK
Sbjct: 100 IVKQVLKEKAKQKKQKKKKKKKKKKKTSKKAAKKKK 135
Score = 39.7 bits (93), Expect = 0.002
Identities = 18/30 (60%), Positives = 23/30 (76%)
Query: 1604 KKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
+K K+ K+K K+KK+KKKKKKKKKKK
Sbjct: 98 QKIVKQVLKEKAKQKKQKKKKKKKKKKKTS 127
Score = 38.9 bits (91), Expect = 0.005
Identities = 18/28 (64%), Positives = 24/28 (85%)
Query: 1610 KKKKKKKKKKKKKKKKKKKKKKKKYSRE 1637
K+ K+K K+KK+KKKKKKKKKKK S++
Sbjct: 102 KQVLKEKAKQKKQKKKKKKKKKKKTSKK 129
Score = 32.0 bits (73), Expect = 1.1
Identities = 13/25 (52%), Positives = 19/25 (76%)
Query: 1614 KKKKKKKKKKKKKKKKKKKKYSREG 1638
K+ K+K K+KK+KKKKKKK ++
Sbjct: 102 KQVLKEKAKQKKQKKKKKKKKKKKT 126
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional.
Length = 2084
Score = 55.1 bits (132), Expect = 4e-07
Identities = 16/57 (28%), Positives = 30/57 (52%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSRE 1637
KKK ++ KK + K + + + + ++K + +KKK++ KKK KK + E
Sbjct: 1333 AAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEE 1389
Score = 54.8 bits (131), Expect = 5e-07
Identities = 16/57 (28%), Positives = 30/57 (52%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSRE 1637
E KKK KKK ++ KK + K + + + + ++K + +KKK++ KK +
Sbjct: 1326 EAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADA 1382
Score = 54.4 bits (130), Expect = 6e-07
Identities = 16/60 (26%), Positives = 32/60 (53%)
Query: 1574 ARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
A++ +KK ++ KKK KKK ++ KK + K + + + + ++K + +KKK
Sbjct: 1314 AKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKK 1373
Score = 54.0 bits (129), Expect = 7e-07
Identities = 17/60 (28%), Positives = 32/60 (53%)
Query: 1574 ARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
A+++ KKK KKK ++ KK + K + + + ++K + +KKK++ KKK
Sbjct: 1320 AKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKK 1379
Score = 54.0 bits (129), Expect = 8e-07
Identities = 15/63 (23%), Positives = 29/63 (46%)
Query: 1575 RREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKY 1634
++ KKK ++ KKK KKK ++ KK K + + + + ++K + +KK
Sbjct: 1314 AKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKK 1373
Query: 1635 SRE 1637
Sbjct: 1374 EEA 1376
Score = 54.0 bits (129), Expect = 9e-07
Identities = 17/60 (28%), Positives = 32/60 (53%)
Query: 1574 ARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
A+++ KKK ++ KK + K + + + ++K + +KKK++ KKK KKK
Sbjct: 1327 AKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKK 1386
Score = 53.6 bits (128), Expect = 1e-06
Identities = 17/53 (32%), Positives = 30/53 (56%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
E KK + K + + + + ++K + +KKK++ KKK KKK ++KKK
Sbjct: 1340 EAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKK 1392
Score = 53.2 bits (127), Expect = 1e-06
Identities = 16/59 (27%), Positives = 32/59 (54%)
Query: 1579 RGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSRE 1637
+ E+ KK + K + + + + ++ + +KKK++ KKK KKK ++KK + E
Sbjct: 1337 KAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADE 1395
Score = 52.5 bits (125), Expect = 3e-06
Identities = 19/71 (26%), Positives = 36/71 (50%)
Query: 1575 RREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKY 1634
++ +KK ++ KK + KKK ++ KKK KKK ++ KK + K + + + +
Sbjct: 1302 KKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEA 1361
Query: 1635 SREGGGGGEKE 1645
+ E EK+
Sbjct: 1362 AEEKAEAAEKK 1372
Score = 52.1 bits (124), Expect = 3e-06
Identities = 18/59 (30%), Positives = 32/59 (54%)
Query: 1574 ARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKK 1632
A++ K + + + + ++K + +KKK + KKK KKK ++KKK + KKK
Sbjct: 1341 AKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKK 1399
Score = 52.1 bits (124), Expect = 3e-06
Identities = 16/62 (25%), Positives = 32/62 (51%)
Query: 1571 DLLARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKK 1630
D ++ +KK KKK ++ KK + K + + + + ++K + +KKK++ K
Sbjct: 1318 DEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAK 1377
Query: 1631 KK 1632
KK
Sbjct: 1378 KK 1379
Score = 51.7 bits (123), Expect = 4e-06
Identities = 17/59 (28%), Positives = 32/59 (54%)
Query: 1574 ARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKK 1632
A+++ KK + K + + + + ++K +KKK++ KKK KKK ++KKK
Sbjct: 1334 AKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKK 1392
Score = 51.3 bits (122), Expect = 5e-06
Identities = 17/64 (26%), Positives = 32/64 (50%)
Query: 1574 ARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
A+++ KK + KKK ++ KKK KKK + KK + K + + + + ++K
Sbjct: 1307 AKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKA 1366
Query: 1634 YSRE 1637
+ E
Sbjct: 1367 EAAE 1370
Score = 51.3 bits (122), Expect = 6e-06
Identities = 17/57 (29%), Positives = 31/57 (54%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSRE 1637
E K + + + + ++K + +K K++ KKK KKK ++KKK + KK + E
Sbjct: 1346 EAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEE 1402
Score = 51.3 bits (122), Expect = 6e-06
Identities = 21/62 (33%), Positives = 35/62 (56%)
Query: 1571 DLLARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKK 1630
A+ E + + ++K + +KKK++ KKK KKK ++KKK + KKK ++ K
Sbjct: 1345 AEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDK 1404
Query: 1631 KK 1632
KK
Sbjct: 1405 KK 1406
Score = 50.5 bits (120), Expect = 8e-06
Identities = 15/59 (25%), Positives = 29/59 (49%)
Query: 1579 RGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSRE 1637
+ + KKK ++ KK + K + + + ++K + +KKK++ KKK K E
Sbjct: 1330 KADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAE 1388
Score = 49.8 bits (118), Expect = 2e-05
Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 4/61 (6%)
Query: 1577 EGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKK----KKKKKKKKKKKKKKKKKKKKKK 1632
E + + + + ++K + +KKK++ KKK KKK ++KKK + KKK ++ KK
Sbjct: 1346 EAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKK 1405
Query: 1633 K 1633
K
Sbjct: 1406 K 1406
Score = 49.4 bits (117), Expect = 2e-05
Identities = 19/62 (30%), Positives = 34/62 (54%)
Query: 1576 REGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYS 1635
+ E + + ++K + +KKK++ KK KKK ++KKK + KKK ++ KK +
Sbjct: 1348 AKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKA 1407
Query: 1636 RE 1637
E
Sbjct: 1408 DE 1409
Score = 48.6 bits (115), Expect = 4e-05
Identities = 18/76 (23%), Positives = 34/76 (44%)
Query: 1574 ARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
A + + K + + + + ++K + + KK++ KKK KKK ++KKK + K
Sbjct: 1338 AEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAK 1397
Query: 1634 YSREGGGGGEKELVQK 1649
E EL +
Sbjct: 1398 KKAEEDKKKADELKKA 1413
Score = 48.6 bits (115), Expect = 4e-05
Identities = 26/68 (38%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Query: 1574 ARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKK----KKKK 1629
A E ++K + +KKK++ KKK KKK +KKK + KKK ++ KKK KK
Sbjct: 1355 AADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAA 1414
Query: 1630 KKKKYSRE 1637
KK + E
Sbjct: 1415 AAKKKADE 1422
Score = 48.2 bits (114), Expect = 4e-05
Identities = 37/117 (31%), Positives = 54/117 (46%), Gaps = 4/117 (3%)
Query: 1517 IKKSLQEVRQAVKGLIVMSKELEEINTSIMFGKIPQAWASKSYPSLKPLGSYIVDLLARR 1576
KK +E ++A + K+ EE K A K+ + K D
Sbjct: 1307 AKKKAEEAKKADE----AKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAA 1362
Query: 1577 EGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
E + E +KKK++ KKK KKK ++KKK + KKK ++ KKK + KK KKK
Sbjct: 1363 EEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKK 1419
Score = 47.4 bits (112), Expect = 7e-05
Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 4/72 (5%)
Query: 1577 EGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKK----KKKKKKKKKKKKKKKKKKK 1632
E + ++KKK + KKK ++ KK + KKK ++ KKK KKK ++ KK + K + +
Sbjct: 1294 EAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAE 1353
Query: 1633 KYSREGGGGGEK 1644
+ E EK
Sbjct: 1354 AAADEAEAAEEK 1365
Score = 46.7 bits (110), Expect = 1e-04
Identities = 23/59 (38%), Positives = 36/59 (61%)
Query: 1574 ARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKK 1632
A + + ++ KKK ++ KKK + KK KKK + KKK ++KKK + KKK ++ KK
Sbjct: 1387 AEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKK 1445
Score = 46.3 bits (109), Expect = 2e-04
Identities = 23/54 (42%), Positives = 33/54 (61%)
Query: 1579 RGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKK 1632
+ E+ KKK + KK KKK + KKK ++KKK + KKK ++ KK + KKK
Sbjct: 1399 KAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKK 1452
Score = 46.3 bits (109), Expect = 2e-04
Identities = 25/57 (43%), Positives = 34/57 (59%)
Query: 1577 EGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
E + E+ KKK KKK ++KKK + KKK ++ KKK + KK KKK + KKK
Sbjct: 1370 EKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKK 1426
Score = 46.3 bits (109), Expect = 2e-04
Identities = 23/66 (34%), Positives = 36/66 (54%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGG 1640
E KK ++KKK + KKK ++ KK + KKK ++ KKK KKK ++ KK + ++
Sbjct: 1294 EAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAE 1353
Query: 1641 GGEKEL 1646
E
Sbjct: 1354 AAADEA 1359
Score = 46.3 bits (109), Expect = 2e-04
Identities = 20/70 (28%), Positives = 38/70 (54%)
Query: 1576 REGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYS 1635
++ +KK + KKK ++ KK + KKK ++ KKK KKK ++ KK + K + + +
Sbjct: 1296 KKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAA 1355
Query: 1636 REGGGGGEKE 1645
+ E++
Sbjct: 1356 ADEAEAAEEK 1365
Score = 46.3 bits (109), Expect = 2e-04
Identities = 24/57 (42%), Positives = 36/57 (63%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSRE 1637
EKKK + KKK ++ KKK + KK KKK + KKK ++KKK + KKK + +++
Sbjct: 1389 EKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKK 1445
Score = 45.9 bits (108), Expect = 2e-04
Identities = 24/54 (44%), Positives = 34/54 (62%)
Query: 1579 RGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKK 1632
+ E+KKK + KKK ++ KKK + KK KKK + KKK ++KKK + KKK
Sbjct: 1386 KAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKK 1439
Score = 45.9 bits (108), Expect = 2e-04
Identities = 23/59 (38%), Positives = 35/59 (59%)
Query: 1574 ARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKK 1632
A + E+ KKK ++ KK + KKK ++ KK + KKK ++ KKK + KK + KKK
Sbjct: 1453 AEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKK 1511
Score = 45.9 bits (108), Expect = 2e-04
Identities = 22/57 (38%), Positives = 35/57 (61%)
Query: 1577 EGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
E + ++ KKK ++ KK + KKK ++ KK + KKK ++ KKK + KK + KKK
Sbjct: 1455 EAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKK 1511
Score = 45.9 bits (108), Expect = 2e-04
Identities = 23/57 (40%), Positives = 34/57 (59%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSRE 1637
E KKK + KK KKK + KKK +KKK + KKK ++ KK + KKK + +++
Sbjct: 1402 EDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKK 1458
Score = 45.9 bits (108), Expect = 2e-04
Identities = 22/57 (38%), Positives = 36/57 (63%)
Query: 1577 EGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
E + + KKK ++ KK ++ KKK ++ KK + KKK ++ KK + KKK ++ KKK
Sbjct: 1442 EAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKK 1498
Score = 45.9 bits (108), Expect = 2e-04
Identities = 23/54 (42%), Positives = 34/54 (62%)
Query: 1579 RGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKK 1632
+ + KKK ++KKK + KKK ++ KKK + KK KKK + KKK ++KKK
Sbjct: 1379 KADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKK 1432
Score = 45.9 bits (108), Expect = 2e-04
Identities = 25/59 (42%), Positives = 33/59 (55%)
Query: 1574 ARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKK 1632
A + + E KKK KKK ++KKK + KKK + KKK + KK KKK + KKK
Sbjct: 1368 AAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKK 1426
Score = 45.5 bits (107), Expect = 3e-04
Identities = 22/59 (37%), Positives = 37/59 (62%)
Query: 1574 ARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKK 1632
A + ++ KKK ++ KK ++ KKK ++ KK + KKK ++ KK + KKK ++ KKK
Sbjct: 1440 AEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKK 1498
Score = 45.5 bits (107), Expect = 3e-04
Identities = 23/57 (40%), Positives = 32/57 (56%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSRE 1637
KKK KKK ++KKK + KKK + KKK + KK KKK + KKK + ++
Sbjct: 1376 AKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKK 1432
Score = 45.5 bits (107), Expect = 3e-04
Identities = 22/59 (37%), Positives = 38/59 (64%)
Query: 1579 RGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSRE 1637
+ E+KKK + KKK ++ KK + KKK + KK ++ KKK ++ KK + KKK + +++
Sbjct: 1426 KAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKK 1484
Score = 45.1 bits (106), Expect = 4e-04
Identities = 22/57 (38%), Positives = 36/57 (63%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSRE 1637
E KKK ++ KK ++ KKK ++ KK KKK ++ KK + KKK ++ KKK +++
Sbjct: 1448 EAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKK 1504
Score = 45.1 bits (106), Expect = 4e-04
Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Query: 1579 RGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKK----KKKKKKKKY 1634
+ E+ KK ++ KKK ++ KK + KKK + KK + KKK ++ KKK KK + KK
Sbjct: 1452 KAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKK 1511
Query: 1635 SREGGGGGEKE 1645
+ E E +
Sbjct: 1512 ADEAKKAEEAK 1522
Score = 44.7 bits (105), Expect = 4e-04
Identities = 27/64 (42%), Positives = 38/64 (59%), Gaps = 4/64 (6%)
Query: 1574 ARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKK----KKKKKKKKKKKK 1629
A+++ KKK ++KKK + KKK ++ KKK KK KKK KKK ++KKK +
Sbjct: 1376 AKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADE 1435
Query: 1630 KKKK 1633
KKK
Sbjct: 1436 AKKK 1439
Score = 44.7 bits (105), Expect = 4e-04
Identities = 22/54 (40%), Positives = 34/54 (62%)
Query: 1579 RGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKK 1632
+ KKK + KKK ++KKK + KKK ++ KK + KKK ++ KK ++ KKK
Sbjct: 1412 KAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKK 1465
Score = 44.7 bits (105), Expect = 5e-04
Identities = 21/64 (32%), Positives = 37/64 (57%)
Query: 1574 ARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
A + ++ KKK ++ KK + KKK ++ KKK + KK + KKK + KK ++ KK
Sbjct: 1466 AEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKAD 1525
Query: 1634 YSRE 1637
+++
Sbjct: 1526 EAKK 1529
Score = 44.7 bits (105), Expect = 5e-04
Identities = 23/57 (40%), Positives = 34/57 (59%)
Query: 1574 ARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKK 1630
A+++ +KKK + KK KKK + KKK + KKK + KKK ++ KK + KKK
Sbjct: 1396 AKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKK 1452
Score = 44.7 bits (105), Expect = 5e-04
Identities = 22/57 (38%), Positives = 36/57 (63%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSRE 1637
KKK + KKK ++KKK + KKK + KK + KKK ++ KK ++ KKK + +++
Sbjct: 1415 AAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKK 1471
Score = 44.4 bits (104), Expect = 6e-04
Identities = 22/64 (34%), Positives = 37/64 (57%)
Query: 1574 ARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
A++ +KK ++ KK + KKK ++ KKK + KK + KKK + KK ++ KK + K
Sbjct: 1469 AKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAK 1528
Query: 1634 YSRE 1637
+ E
Sbjct: 1529 KAEE 1532
Score = 44.4 bits (104), Expect = 6e-04
Identities = 21/59 (35%), Positives = 35/59 (59%)
Query: 1579 RGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSRE 1637
+ E+ KK + KKK ++ KK + KKK + KKK + KK + KKK + KK + +++
Sbjct: 1465 KAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKK 1523
Score = 44.4 bits (104), Expect = 6e-04
Identities = 24/63 (38%), Positives = 38/63 (60%), Gaps = 4/63 (6%)
Query: 1579 RGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKK----KKKKKKKKKKKKKKKKKKKKKKY 1634
+ E+ KK + KKK ++ KK ++ KKK + KK KKK ++ KK + KKK ++ KK
Sbjct: 1439 KAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKK 1498
Query: 1635 SRE 1637
+ E
Sbjct: 1499 ADE 1501
Score = 44.4 bits (104), Expect = 6e-04
Identities = 21/58 (36%), Positives = 36/58 (62%)
Query: 1574 ARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKK 1631
A + + ++ KKK ++ KK + KKK ++ KK + KKK ++ KK + KKK ++ KK
Sbjct: 1427 AEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKK 1484
Score = 44.4 bits (104), Expect = 7e-04
Identities = 21/56 (37%), Positives = 35/56 (62%)
Query: 1577 EGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKK 1632
E + + KKK ++ KK + KKK ++ KK ++ KKK ++ KK + KKK ++ KK
Sbjct: 1429 EKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKK 1484
Score = 44.4 bits (104), Expect = 7e-04
Identities = 22/57 (38%), Positives = 34/57 (59%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSRE 1637
E KK KKK + KKK ++KKK KKK ++ KK + KKK ++ KK ++ ++
Sbjct: 1409 ELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKK 1465
Score = 44.4 bits (104), Expect = 7e-04
Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 4/59 (6%)
Query: 1579 RGEKKKKKKKKKKKKKKKK----KKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
+ E+KKK + KK ++KKK KKK ++ KK + KKK ++ KKK KKK ++ KK
Sbjct: 1285 KAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKK 1343
Score = 44.0 bits (103), Expect = 8e-04
Identities = 25/63 (39%), Positives = 40/63 (63%), Gaps = 4/63 (6%)
Query: 1574 ARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKK---- 1629
A+++ KKK ++KKK + KKK ++ KK + KKK ++ KK ++ KKK ++ KK
Sbjct: 1416 AKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEA 1475
Query: 1630 KKK 1632
KKK
Sbjct: 1476 KKK 1478
Score = 44.0 bits (103), Expect = 8e-04
Identities = 25/57 (43%), Positives = 35/57 (61%), Gaps = 4/57 (7%)
Query: 1581 EKKKKKKKKKKKKKKK----KKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
EKKK + KK ++KKK KKK ++ KK + KKK ++ KKK KKK ++ KK
Sbjct: 1288 EKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKA 1344
Score = 43.2 bits (101), Expect = 0.002
Identities = 24/72 (33%), Positives = 40/72 (55%)
Query: 1574 ARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
A+++ KK + KKK ++ KKK + KK + KKK + KK ++ KK + KK ++ K
Sbjct: 1475 AKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAK 1534
Query: 1634 YSREGGGGGEKE 1645
+ E EK+
Sbjct: 1535 KADEAKKAEEKK 1546
Score = 42.8 bits (100), Expect = 0.002
Identities = 22/67 (32%), Positives = 35/67 (52%)
Query: 1571 DLLARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKK 1630
D ++ +KK + KK KKK + KKK ++ KK + KKK ++ KK + KKK
Sbjct: 1394 DEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKA 1453
Query: 1631 KKKYSRE 1637
++ E
Sbjct: 1454 EEAKKAE 1460
Score = 42.8 bits (100), Expect = 0.002
Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
Query: 1575 RREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKK---KKKKKKKKKKKKK 1631
++ KKK ++ KK + KKK ++ KK + KKK ++ KKK KK + KKK +
Sbjct: 1456 AKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEA 1515
Query: 1632 KK 1633
KK
Sbjct: 1516 KK 1517
Score = 42.8 bits (100), Expect = 0.002
Identities = 21/60 (35%), Positives = 35/60 (58%)
Query: 1574 ARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
A+++ KK + KKK ++ KK + KKK ++ KKK + KK + KKK + KK ++
Sbjct: 1462 AKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEA 1521
Score = 42.4 bits (99), Expect = 0.002
Identities = 25/68 (36%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 1574 ARREGRGEKKK----KKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKK 1629
A + +KK KKK KKK ++KKK + KK ++ KKK + KK KKK
Sbjct: 1362 AEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKAD 1421
Query: 1630 KKKKYSRE 1637
+ KK + E
Sbjct: 1422 EAKKKAEE 1429
Score = 42.4 bits (99), Expect = 0.003
Identities = 20/53 (37%), Positives = 37/53 (69%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
E+ KK ++ KKK ++ KK ++ +KK + KK+ ++ KK ++ KKK+ ++KKK
Sbjct: 1665 EEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKK 1717
Score = 42.4 bits (99), Expect = 0.003
Identities = 18/63 (28%), Positives = 39/63 (61%)
Query: 1575 RREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKY 1634
+ +K ++ KKK ++ KK ++ +KK + KK+ ++ KK ++ KKK+ ++KKK ++
Sbjct: 1662 KAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEEL 1721
Query: 1635 SRE 1637
+
Sbjct: 1722 KKA 1724
Score = 42.4 bits (99), Expect = 0.003
Identities = 21/75 (28%), Positives = 38/75 (50%)
Query: 1575 RREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKY 1634
++ +KK ++ KK + KKK ++ KK ++ KK ++ KK + KKK ++ KK + K
Sbjct: 1431 KKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKK 1490
Query: 1635 SREGGGGGEKELVQK 1649
E E +
Sbjct: 1491 KAEEAKKKADEAKKA 1505
Score = 42.4 bits (99), Expect = 0.003
Identities = 20/62 (32%), Positives = 37/62 (59%)
Query: 1576 REGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYS 1635
++ E K K ++ KK ++ KKK ++ KK + +KK + KK+ ++ KK ++ KKK +
Sbjct: 1653 KKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEA 1712
Query: 1636 RE 1637
E
Sbjct: 1713 EE 1714
Score = 42.1 bits (98), Expect = 0.003
Identities = 24/57 (42%), Positives = 36/57 (63%), Gaps = 4/57 (7%)
Query: 1581 EKKKKKKKKKK----KKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
E KKK ++KKK KKK ++ KK + KK ++ KK ++ KKK ++ KK + KKK
Sbjct: 1422 EAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKK 1478
Score = 42.1 bits (98), Expect = 0.004
Identities = 23/76 (30%), Positives = 40/76 (52%)
Query: 1574 ARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
A + ++ KK ++KKK + KK ++KKK + KKK ++ KK + KKK ++ KKK
Sbjct: 1274 AEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADA 1333
Query: 1634 YSREGGGGGEKELVQK 1649
++ + K
Sbjct: 1334 AKKKAEEAKKAAEAAK 1349
Score = 41.7 bits (97), Expect = 0.004
Identities = 22/57 (38%), Positives = 33/57 (57%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSRE 1637
E KKK + KK + KKK + KK + KK + KK ++ KK + KK ++KK + E
Sbjct: 1494 EAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADE 1550
Score = 41.7 bits (97), Expect = 0.004
Identities = 21/57 (36%), Positives = 34/57 (59%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSRE 1637
+ KKK + KKK ++KKK + K K ++ KK + KKK ++ KK ++ KK + E
Sbjct: 1412 KAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEE 1468
Score = 41.3 bits (96), Expect = 0.006
Identities = 22/57 (38%), Positives = 34/57 (59%)
Query: 1577 EGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
E + KKK + KKK ++KKK + KK ++ KK + KKK ++ KK ++ KKK
Sbjct: 1409 ELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKK 1465
Score = 41.3 bits (96), Expect = 0.006
Identities = 18/59 (30%), Positives = 35/59 (59%)
Query: 1575 RREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
++ K K ++ KK ++ KKK ++ KK + +KK + KK+ ++ KK ++ KKK+
Sbjct: 1653 KKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKE 1711
Score = 41.3 bits (96), Expect = 0.006
Identities = 19/63 (30%), Positives = 39/63 (61%)
Query: 1575 RREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKY 1634
++ +KKK ++ KK ++ +KK + KK+ + KK ++ KKK+ ++KKK ++ KK +
Sbjct: 1667 AKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEE 1726
Query: 1635 SRE 1637
+
Sbjct: 1727 ENK 1729
Score = 40.9 bits (95), Expect = 0.007
Identities = 24/82 (29%), Positives = 44/82 (53%), Gaps = 6/82 (7%)
Query: 1574 ARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKK------KKKK 1627
A++ EKK + KK+ ++ KK ++ KKK+ +KKK ++ KK +++ K KK+
Sbjct: 1680 AKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEA 1739
Query: 1628 KKKKKKYSREGGGGGEKELVQK 1649
++ KKK EK+ +
Sbjct: 1740 EEDKKKAEEAKKDEEEKKKIAH 1761
Score = 40.9 bits (95), Expect = 0.007
Identities = 22/60 (36%), Positives = 36/60 (60%)
Query: 1574 ARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
A+++ KKK + KK + KKK + KK ++ KK + KK ++ KK + KK ++KKK
Sbjct: 1488 AKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKK 1547
Score = 40.9 bits (95), Expect = 0.007
Identities = 20/64 (31%), Positives = 40/64 (62%)
Query: 1574 ARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
A E + ++ KKK ++ KK ++ +KK + K + ++ KK ++ KKK+ ++KKK ++ K
Sbjct: 1663 AAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELK 1722
Query: 1634 YSRE 1637
+ E
Sbjct: 1723 KAEE 1726
Score = 40.9 bits (95), Expect = 0.007
Identities = 19/61 (31%), Positives = 39/61 (63%)
Query: 1573 LARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKK 1632
A++ +KK ++ KK ++ +KK + KK+ + KK ++ KKK+ ++KKK ++ KK +
Sbjct: 1666 EAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAE 1725
Query: 1633 K 1633
+
Sbjct: 1726 E 1726
Score = 40.5 bits (94), Expect = 0.010
Identities = 21/53 (39%), Positives = 32/53 (60%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
E KK + KKK + KK ++ KK + KK ++ KK + KK ++KKK + KK
Sbjct: 1501 EAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKK 1553
Score = 40.1 bits (93), Expect = 0.012
Identities = 23/76 (30%), Positives = 44/76 (57%)
Query: 1574 ARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
ARR+ + ++ +K + KK ++KKK + KK +KKK + KKK ++ KK + KKK +
Sbjct: 1266 ARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAE 1325
Query: 1634 YSREGGGGGEKELVQK 1649
+++ +K+ +
Sbjct: 1326 EAKKKADAAKKKAEEA 1341
Score = 40.1 bits (93), Expect = 0.012
Identities = 18/53 (33%), Positives = 34/53 (64%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
E KK +++ K K ++ KK ++ KKK ++ KK ++ +KK + KK+ ++ KK
Sbjct: 1651 ELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKK 1703
Score = 40.1 bits (93), Expect = 0.013
Identities = 24/79 (30%), Positives = 42/79 (53%), Gaps = 4/79 (5%)
Query: 1575 RREGRGEKKKKKKKKK----KKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKK 1630
++ KKK ++ KK KKK ++ KKK + KK + KKK + KK ++ KK + K
Sbjct: 1469 AKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAK 1528
Query: 1631 KKKYSREGGGGGEKELVQK 1649
K + +++ + E +K
Sbjct: 1529 KAEEAKKADEAKKAEEKKK 1547
Score = 40.1 bits (93), Expect = 0.014
Identities = 20/57 (35%), Positives = 37/57 (64%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSRE 1637
E+KKK ++ KK +++ K K ++ KK ++ KKK ++ KK ++ +KK + KK + E
Sbjct: 1644 EEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEE 1700
Score = 39.7 bits (92), Expect = 0.016
Identities = 19/59 (32%), Positives = 39/59 (66%)
Query: 1575 RREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
+++ KKK+ ++KKK ++ KK +++ K K ++ KK ++ KKK ++ KK ++ +KK
Sbjct: 1632 KKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKA 1690
Score = 39.7 bits (92), Expect = 0.018
Identities = 19/60 (31%), Positives = 37/60 (61%)
Query: 1573 LARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKK 1632
L + E + K ++ KK ++ KKK ++ KK ++ +KK + KK+ ++ KK ++ KKK+
Sbjct: 1652 LKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKE 1711
Score = 39.7 bits (92), Expect = 0.018
Identities = 22/71 (30%), Positives = 39/71 (54%)
Query: 1579 RGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREG 1638
+ ++ KK + KKK + KK ++ KK KK ++ KK + KK ++KKK + K + E
Sbjct: 1498 KADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEEL 1557
Query: 1639 GGGGEKELVQK 1649
EK+ ++
Sbjct: 1558 KKAEEKKKAEE 1568
Score = 39.7 bits (92), Expect = 0.019
Identities = 24/75 (32%), Positives = 45/75 (60%)
Query: 1575 RREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKY 1634
+++ EKKK ++ KK +++ K K ++ KK+ + KKK ++ KK +++KKK KK++
Sbjct: 1708 KKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEE 1767
Query: 1635 SREGGGGGEKELVQK 1649
+ EKE V +
Sbjct: 1768 KKAEEIRKEKEAVIE 1782
Score = 39.0 bits (90), Expect = 0.026
Identities = 23/67 (34%), Positives = 43/67 (64%)
Query: 1579 RGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREG 1638
+ E+ KK +++KKK ++ KKK+ ++KKK ++ KK +++ K K ++ KK ++ KK + E
Sbjct: 1621 KAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEA 1680
Query: 1639 GGGGEKE 1645
E E
Sbjct: 1681 KKAEEDE 1687
Score = 39.0 bits (90), Expect = 0.030
Identities = 20/63 (31%), Positives = 39/63 (61%)
Query: 1570 VDLLARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKK 1629
V+ L ++E +KK ++ KK +++ K K ++ KK + KKK ++ KK ++ +KK +
Sbjct: 1635 VEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEAL 1694
Query: 1630 KKK 1632
KK+
Sbjct: 1695 KKE 1697
Score = 39.0 bits (90), Expect = 0.032
Identities = 20/62 (32%), Positives = 34/62 (54%)
Query: 1571 DLLARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKK 1630
D ++ +KK + KK + KKK + KK ++ K + KK ++ KK + KK ++K
Sbjct: 1486 DEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEK 1545
Query: 1631 KK 1632
KK
Sbjct: 1546 KK 1547
Score = 38.6 bits (89), Expect = 0.033
Identities = 22/71 (30%), Positives = 45/71 (63%)
Query: 1579 RGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREG 1638
+ E++KKK ++ KKK+ ++KKK ++ KK +++ K K ++ KK ++ KKK ++ K + E
Sbjct: 1627 KAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEED 1686
Query: 1639 GGGGEKELVQK 1649
+ L ++
Sbjct: 1687 EKKAAEALKKE 1697
Score = 38.6 bits (89), Expect = 0.033
Identities = 22/69 (31%), Positives = 38/69 (55%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGG 1640
E KK + KK ++ KK + KK ++K K + KK ++ KK ++KKK ++ KK +
Sbjct: 1520 EAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMA 1579
Query: 1641 GGEKELVQK 1649
+ E +K
Sbjct: 1580 LRKAEEAKK 1588
Score = 38.2 bits (88), Expect = 0.044
Identities = 19/53 (35%), Positives = 35/53 (66%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
E KK ++ +KK + KK+ ++ KK + KKK+ ++KKK ++ KK +++ K K
Sbjct: 1679 EAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIK 1731
Score = 38.2 bits (88), Expect = 0.046
Identities = 21/61 (34%), Positives = 37/61 (60%)
Query: 1577 EGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSR 1636
E + ++ KK + KK ++ KK + KK + KKK + KK ++ KK ++KKK ++ K +
Sbjct: 1514 EAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAE 1573
Query: 1637 E 1637
E
Sbjct: 1574 E 1574
Score = 38.2 bits (88), Expect = 0.049
Identities = 21/60 (35%), Positives = 38/60 (63%)
Query: 1574 ARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
A + + ++ KK ++ KK + KK ++ KK + KK ++KKK + KK ++ KK ++KKK
Sbjct: 1506 AEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKK 1565
Score = 38.2 bits (88), Expect = 0.053
Identities = 24/78 (30%), Positives = 44/78 (56%), Gaps = 4/78 (5%)
Query: 1576 REGRGEKKKKKKKKKKKKKKKKK----KKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKK 1631
++ EKKK ++ KKK+ ++KKK KK +++ K K ++ KK ++ KKK ++ KK ++
Sbjct: 1626 KKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEE 1685
Query: 1632 KKYSREGGGGGEKELVQK 1649
+ E E +K
Sbjct: 1686 DEKKAAEALKKEAEEAKK 1703
Score = 38.2 bits (88), Expect = 0.054
Identities = 20/59 (33%), Positives = 37/59 (62%)
Query: 1574 ARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKK 1632
A + ++ KK ++ KK + KK ++KKK + KK ++ KK ++KKK ++ KK ++ K
Sbjct: 1518 AEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDK 1576
Score = 38.2 bits (88), Expect = 0.054
Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKK----KKKKKKKKKKKKKKKKKKKKKYSR 1636
EKKK ++ KK +++ K K ++ KK + KKK KK ++ +KK + KK+ ++
Sbjct: 1645 EKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKA 1704
Query: 1637 EGGGGGEKELVQK 1649
E E E +K
Sbjct: 1705 EELKKKEAEEKKK 1717
Score = 37.8 bits (87), Expect = 0.059
Identities = 29/121 (23%), Positives = 59/121 (48%), Gaps = 2/121 (1%)
Query: 1519 KSLQEVRQA--VKGLIVMSKELEEINTSIMFGKIPQAWASKSYPSLKPLGSYIVDLLARR 1576
K +E+++A K K E+ N ++ + + + L + A
Sbjct: 1552 KKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEE 1611
Query: 1577 EGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSR 1636
+ E+ K K ++ KK +++KKK ++ KKK ++KKK ++ KK +++ K K ++ K +
Sbjct: 1612 AKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAE 1671
Query: 1637 E 1637
E
Sbjct: 1672 E 1672
Score = 37.8 bits (87), Expect = 0.067
Identities = 18/58 (31%), Positives = 37/58 (63%)
Query: 1575 RREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKK 1632
+++ KK ++ +KK + KK+ ++ KK + KKK+ ++KKK ++ KK +++ K K
Sbjct: 1674 KKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIK 1731
Score = 37.4 bits (86), Expect = 0.085
Identities = 20/59 (33%), Positives = 34/59 (57%)
Query: 1574 ARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKK 1632
A+++ KK + KKK + KK ++ KK + K ++ KK + KK ++KKK + KK
Sbjct: 1495 AKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKK 1553
Score = 37.4 bits (86), Expect = 0.091
Identities = 21/59 (35%), Positives = 39/59 (66%)
Query: 1574 ARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKK 1632
A+ + KK +++KKK ++ KKK+ ++KKK + KK +++ K K ++ KK ++ KKK
Sbjct: 1618 AKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKK 1676
Score = 37.0 bits (85), Expect = 0.10
Identities = 21/65 (32%), Positives = 36/65 (55%)
Query: 1573 LARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKK 1632
+A R K ++ +K + KK ++KKK + K ++KKK + KKK ++ KK + K
Sbjct: 1262 MAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAK 1321
Query: 1633 KYSRE 1637
K + E
Sbjct: 1322 KKAEE 1326
Score = 37.0 bits (85), Expect = 0.11
Identities = 19/59 (32%), Positives = 38/59 (64%)
Query: 1575 RREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
++ +KK ++ KKK+ ++KKK ++ KK ++ K K ++ KK ++ KKK ++ KK +
Sbjct: 1626 KKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAE 1684
Score = 36.7 bits (84), Expect = 0.15
Identities = 19/54 (35%), Positives = 34/54 (62%)
Query: 1579 RGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKK 1632
+ E+ KK + KK ++KKK + KK ++ KK ++KKK ++ KK ++ K +K
Sbjct: 1529 KAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRK 1582
Score = 36.3 bits (83), Expect = 0.19
Identities = 23/70 (32%), Positives = 46/70 (65%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGG 1640
E KK +++ K K ++ KK+ ++ KKK ++ KK +++KKK KK+++KK ++ +E
Sbjct: 1720 ELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEA 1779
Query: 1641 GGEKELVQKN 1650
E+EL +++
Sbjct: 1780 VIEEELDEED 1789
Score = 36.3 bits (83), Expect = 0.21
Identities = 20/57 (35%), Positives = 35/57 (61%)
Query: 1577 EGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
E + + KK ++ KK + KK ++KKK KK ++ KK ++KKK ++ KK ++ K
Sbjct: 1520 EAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDK 1576
Score = 35.9 bits (82), Expect = 0.22
Identities = 20/57 (35%), Positives = 38/57 (66%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSRE 1637
E K K ++ KK +++KKK ++ KKK+ ++KKK ++ KK +++ K K ++ KK +
Sbjct: 1617 EAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEED 1673
Score = 35.9 bits (82), Expect = 0.23
Identities = 20/60 (33%), Positives = 38/60 (63%)
Query: 1574 ARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
A++ +K + KK ++ KK + KK ++KKK + KK ++ KK ++KKK ++ KK ++
Sbjct: 1515 AKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEE 1574
Score = 35.9 bits (82), Expect = 0.27
Identities = 22/76 (28%), Positives = 42/76 (55%)
Query: 1574 ARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
A++ +K ++KKK + KK ++ KK ++KKK ++ KK ++ K +K ++ KK ++
Sbjct: 1533 AKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEA 1592
Query: 1634 YSREGGGGGEKELVQK 1649
E E+E K
Sbjct: 1593 RIEEVMKLYEEEKKMK 1608
Score = 35.1 bits (80), Expect = 0.38
Identities = 20/63 (31%), Positives = 39/63 (61%)
Query: 1576 REGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYS 1635
++ E K K ++ KK+ ++ KKK ++ KK ++KKK KK+++KK ++ +K+K+
Sbjct: 1722 KKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVI 1781
Query: 1636 REG 1638
E
Sbjct: 1782 EEE 1784
Score = 35.1 bits (80), Expect = 0.44
Identities = 23/65 (35%), Positives = 42/65 (64%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGG 1640
E++KK K ++ KK ++ K K ++ KK +++KKK ++ KKK+ ++KKK ++ KK E
Sbjct: 1602 EEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKI 1661
Query: 1641 GGEKE 1645
+E
Sbjct: 1662 KAAEE 1666
Score = 35.1 bits (80), Expect = 0.48
Identities = 22/65 (33%), Positives = 42/65 (64%), Gaps = 4/65 (6%)
Query: 1573 LARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKK----KKKK 1628
L + +K ++ KKK+ ++KKK ++ KK +++ K K ++ KK+ ++ KKK KK +
Sbjct: 1694 LKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDE 1753
Query: 1629 KKKKK 1633
++KKK
Sbjct: 1754 EEKKK 1758
Score = 34.7 bits (79), Expect = 0.54
Identities = 21/59 (35%), Positives = 37/59 (62%), Gaps = 4/59 (6%)
Query: 1579 RGEKKKKKKKKKKKKKKKK----KKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
+ E+ KK + KK ++ KK KK ++KKK + KK ++ KK ++KKK ++ KK ++
Sbjct: 1517 KAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEED 1575
Score = 34.7 bits (79), Expect = 0.56
Identities = 19/57 (33%), Positives = 34/57 (59%)
Query: 1577 EGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
E + ++ KK + KK ++KKK + KK + KK ++KKK ++ KK ++ K +K
Sbjct: 1526 EAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRK 1582
Score = 34.3 bits (78), Expect = 0.68
Identities = 19/61 (31%), Positives = 39/61 (63%)
Query: 1577 EGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSR 1636
E + +++KKK ++ KKK+ ++KKK ++ K +++ K K ++ KK ++ KKK ++
Sbjct: 1624 ELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKA 1683
Query: 1637 E 1637
E
Sbjct: 1684 E 1684
Score = 34.3 bits (78), Expect = 0.77
Identities = 20/71 (28%), Positives = 43/71 (60%)
Query: 1579 RGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREG 1638
+ E+ KK +++ K K ++ KK+ ++ KK ++ KK +++KKK KK+++KK + R+
Sbjct: 1717 KAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKE 1776
Query: 1639 GGGGEKELVQK 1649
+E + +
Sbjct: 1777 KEAVIEEELDE 1787
Score = 33.2 bits (75), Expect = 1.5
Identities = 18/61 (29%), Positives = 34/61 (55%)
Query: 1577 EGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSR 1636
E R +++ K ++ +K + KK ++ KK + KK ++KKK + KKK ++ K +
Sbjct: 1259 EARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKAD 1318
Query: 1637 E 1637
E
Sbjct: 1319 E 1319
Score = 32.8 bits (74), Expect = 2.0
Identities = 25/78 (32%), Positives = 46/78 (58%), Gaps = 2/78 (2%)
Query: 1574 ARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKK--KKKKKKKKKKKKKKK 1631
AR E + +++KK K ++ KK ++ K K ++ KK +++KKK + KKK+ ++KKK ++
Sbjct: 1592 ARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEE 1651
Query: 1632 KKYSREGGGGGEKELVQK 1649
K + E E +K
Sbjct: 1652 LKKAEEENKIKAAEEAKK 1669
Score = 32.8 bits (74), Expect = 2.2
Identities = 22/73 (30%), Positives = 44/73 (60%)
Query: 1577 EGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSR 1636
E R E+ K +++KK K ++ KK ++ K ++ KK +++KKK ++ KKK+ ++KK +
Sbjct: 1591 EARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAE 1650
Query: 1637 EGGGGGEKELVQK 1649
E E+ ++
Sbjct: 1651 ELKKAEEENKIKA 1663
Score = 32.4 bits (73), Expect = 3.0
Identities = 16/59 (27%), Positives = 40/59 (67%)
Query: 1574 ARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKK 1632
A++E +KKK ++ KK +++KKK KK+++ K ++ +K+K+ +++ ++ +K++
Sbjct: 1735 AKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRR 1793
Score = 31.6 bits (71), Expect = 4.3
Identities = 18/56 (32%), Positives = 34/56 (60%)
Query: 1574 ARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKK 1629
A++ +K + KK ++KKK + KK ++ KK ++KKK ++ KK ++ K +K
Sbjct: 1527 AKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRK 1582
Score = 31.3 bits (70), Expect = 6.0
Identities = 21/68 (30%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Query: 1581 EKKK----KKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSR 1636
EKKK KK ++ KK ++KKK ++ KK + K +K ++ KK ++ + ++ K Y
Sbjct: 1544 EKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEE 1603
Query: 1637 EGGGGGEK 1644
E E+
Sbjct: 1604 EKKMKAEE 1611
Score = 30.9 bits (69), Expect = 7.3
Identities = 16/59 (27%), Positives = 37/59 (62%)
Query: 1579 RGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSRE 1637
+ ++ KKK ++ KK +++KKK KK ++KK ++ +K+K+ +++ ++ +K E
Sbjct: 1737 KEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRME 1795
Score = 30.9 bits (69), Expect = 8.3
Identities = 17/63 (26%), Positives = 40/63 (63%)
Query: 1582 KKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGGG 1641
KK+ ++ KKK ++ KK +++KKK + KK+++KK ++ +K+K+ +++ + +
Sbjct: 1736 KKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRME 1795
Query: 1642 GEK 1644
+K
Sbjct: 1796 VDK 1798
Score = 30.9 bits (69), Expect = 9.3
Identities = 19/58 (32%), Positives = 38/58 (65%)
Query: 1573 LARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKK 1630
L + E + K ++ KK+ ++ KKK ++ KK ++ KKK KK+++KK ++ +K+K+
Sbjct: 1721 LKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKE 1778
Score = 30.5 bits (68), Expect = 9.7
Identities = 17/61 (27%), Positives = 34/61 (55%)
Query: 1577 EGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSR 1636
E R ++ + +++ K ++ +K + KK ++KKK + KK ++KKK + KK +
Sbjct: 1253 EIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAE 1312
Query: 1637 E 1637
E
Sbjct: 1313 E 1313
>gnl|CDD|221641 pfam12569, NARP1, NMDA receptor-regulated protein 1. This domain
family is found in eukaryotes, and is approximately 40
amino acids in length. The family is found in association
with pfam07719, pfam00515. There is a single completely
conserved residue L that may be functionally important.
NARP1 is the mammalian homologue of a yeast N-terminal
acetyltransferase that regulates entry into the G(0)
phase of the cell cycle.
Length = 516
Score = 53.4 bits (129), Expect = 7e-07
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Query: 1555 ASKSYPSL--KPLGSYIVDLLARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKK 1612
A + Y L KPL + + ++KK +KK++K +KK +K++ +K KKK
Sbjct: 380 AIEIYLKLHDKPLLAEGEEEEGENGNLSPAERKKLRKKQRKAEKKAEKEEAEKAAAKKKA 439
Query: 1613 KKKKKKKKKKKKKKKKK 1629
+ KK K + KK
Sbjct: 440 EAAAKKAKGPDGETKKV 456
Score = 51.1 bits (123), Expect = 4e-06
Identities = 17/49 (34%), Positives = 29/49 (59%)
Query: 1582 KKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKK 1630
++KK +KK++K +KK +K++ +K KKK + KK K + KK
Sbjct: 408 PAERKKLRKKQRKAEKKAEKEEAEKAAAKKKAEAAAKKAKGPDGETKKV 456
Score = 49.9 bits (120), Expect = 8e-06
Identities = 17/49 (34%), Positives = 28/49 (57%)
Query: 1586 KKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKY 1634
++KK +KK++K +KK +K+ +K KKK + KK K + KK
Sbjct: 408 PAERKKLRKKQRKAEKKAEKEEAEKAAAKKKAEAAAKKAKGPDGETKKV 456
Score = 49.5 bits (119), Expect = 1e-05
Identities = 17/49 (34%), Positives = 28/49 (57%)
Query: 1584 KKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKK 1632
++KK +KK++K +KK +K++ K KKK + KK K + KK
Sbjct: 408 PAERKKLRKKQRKAEKKAEKEEAEKAAAKKKAEAAAKKAKGPDGETKKV 456
Score = 43.4 bits (103), Expect = 9e-04
Identities = 15/63 (23%), Positives = 35/63 (55%)
Query: 1583 KKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGGGG 1642
K + ++++ + ++KK +KK++K +KK +K++ +K KKK + + + G
Sbjct: 390 KPLLAEGEEEEGENGNLSPAERKKLRKKQRKAEKKAEKEEAEKAAAKKKAEAAAKKAKGP 449
Query: 1643 EKE 1645
+ E
Sbjct: 450 DGE 452
Score = 42.6 bits (101), Expect = 0.002
Identities = 14/64 (21%), Positives = 34/64 (53%)
Query: 1582 KKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGGG 1641
K + ++++ + ++KK KK++K +KK +K++ +K KKK + +++ G
Sbjct: 390 KPLLAEGEEEEGENGNLSPAERKKLRKKQRKAEKKAEKEEAEKAAAKKKAEAAAKKAKGP 449
Query: 1642 GEKE 1645
+
Sbjct: 450 DGET 453
Score = 42.2 bits (100), Expect = 0.002
Identities = 15/49 (30%), Positives = 28/49 (57%)
Query: 1597 KKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGGGGEKE 1645
++KK +KK +K +KK +K++ +K KKK + K ++ G +K
Sbjct: 408 PAERKKLRKKQRKAEKKAEKEEAEKAAAKKKAEAAAKKAKGPDGETKKV 456
Score = 39.1 bits (92), Expect = 0.017
Identities = 14/63 (22%), Positives = 33/63 (52%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGG 1640
+ + ++++ + ++KK + K++K +KK +K++ +K KKK + + G
Sbjct: 390 KPLLAEGEEEEGENGNLSPAERKKLRKKQRKAEKKAEKEEAEKAAAKKKAEAAAKKAKGP 449
Query: 1641 GGE 1643
GE
Sbjct: 450 DGE 452
>gnl|CDD|235322 PRK04950, PRK04950, ProP expression regulator; Provisional.
Length = 213
Score = 51.5 bits (124), Expect = 7e-07
Identities = 13/51 (25%), Positives = 33/51 (64%)
Query: 1582 KKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKK 1632
K K + ++ +++ KK++ +K+K ++++K K K +KK+K + +K + +
Sbjct: 107 KAKVQAQRAEQQAKKREAAGEKEKAPRRERKPKPKAPRKKRKPRAQKPEPQ 157
Score = 51.1 bits (123), Expect = 8e-07
Identities = 14/53 (26%), Positives = 34/53 (64%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
E K K + ++ +++ KK++ +K+K ++++K K K +KK+K + +K + +
Sbjct: 105 EAKAKVQAQRAEQQAKKREAAGEKEKAPRRERKPKPKAPRKKRKPRAQKPEPQ 157
Score = 49.5 bits (119), Expect = 3e-06
Identities = 12/53 (22%), Positives = 31/53 (58%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
K + ++ +++ KK++ +K+K + ++K K K +KK+K + +K + +
Sbjct: 108 AKVQAQRAEQQAKKREAAGEKEKAPRRERKPKPKAPRKKRKPRAQKPEPQHTP 160
Score = 49.2 bits (118), Expect = 5e-06
Identities = 11/51 (21%), Positives = 30/51 (58%)
Query: 1582 KKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKK 1632
+ ++ +++ KK++ +K+K +++ K K K +KK+K + +K + +
Sbjct: 111 QAQRAEQQAKKREAAGEKEKAPRRERKPKPKAPRKKRKPRAQKPEPQHTPV 161
Score = 48.8 bits (117), Expect = 5e-06
Identities = 11/50 (22%), Positives = 30/50 (60%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKK 1630
++ +++ KK++ +K+K ++++K K K +KK+K + +K + +
Sbjct: 112 AQRAEQQAKKREAAGEKEKAPRRERKPKPKAPRKKRKPRAQKPEPQHTPV 161
Score = 48.4 bits (116), Expect = 7e-06
Identities = 11/51 (21%), Positives = 30/51 (58%)
Query: 1583 KKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
+ ++ +++ KK++ +K+K ++ +K K K +KK+K + +K + +
Sbjct: 111 QAQRAEQQAKKREAAGEKEKAPRRERKPKPKAPRKKRKPRAQKPEPQHTPV 161
Score = 48.4 bits (116), Expect = 9e-06
Identities = 11/53 (20%), Positives = 30/53 (56%)
Query: 1583 KKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYS 1635
++ +++ KK++ +K+K ++++ K K +KK+K + +K + + S
Sbjct: 113 QRAEQQAKKREAAGEKEKAPRRERKPKPKAPRKKRKPRAQKPEPQHTPVSDIS 165
Score = 48.0 bits (115), Expect = 1e-05
Identities = 13/49 (26%), Positives = 30/49 (61%)
Query: 1589 KKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSRE 1637
K K + ++ +++ KK++ +K+K ++++K K K +KK+K + E
Sbjct: 107 KAKVQAQRAEQQAKKREAAGEKEKAPRRERKPKPKAPRKKRKPRAQKPE 155
Score = 47.6 bits (114), Expect = 1e-05
Identities = 13/55 (23%), Positives = 30/55 (54%)
Query: 1579 RGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
R E++ KK++ +K+K ++++K K K +KK+K + +K + + +
Sbjct: 114 RAEQQAKKREAAGEKEKAPRRERKPKPKAPRKKRKPRAQKPEPQHTPVSDISELT 168
Score = 46.1 bits (110), Expect = 5e-05
Identities = 12/60 (20%), Positives = 30/60 (50%)
Query: 1574 ARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
A+R + KK++ +K+K ++++K K K + K+K + +K + + + +
Sbjct: 112 AQRAEQQAKKREAAGEKEKAPRRERKPKPKAPRKKRKPRAQKPEPQHTPVSDISELTVGQ 171
Score = 45.7 bits (109), Expect = 5e-05
Identities = 11/59 (18%), Positives = 29/59 (49%)
Query: 1575 RREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
R E + +K++ +K+K ++++K K K +K +K + +K + + + +
Sbjct: 114 RAEQQAKKREAAGEKEKAPRRERKPKPKAPRKKRKPRAQKPEPQHTPVSDISELTVGQA 172
Score = 44.1 bits (105), Expect = 2e-04
Identities = 14/57 (24%), Positives = 28/57 (49%)
Query: 1574 ARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKK 1630
+RE GEK+K ++++K K K +KK+K + + + + + + K K
Sbjct: 120 KKREAAGEKEKAPRRERKPKPKAPRKKRKPRAQKPEPQHTPVSDISELTVGQAVKVK 176
Score = 44.1 bits (105), Expect = 2e-04
Identities = 12/60 (20%), Positives = 27/60 (45%)
Query: 1574 ARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
+ + R +K+K ++++K K K +KK+K +K + + + + K K
Sbjct: 117 QQAKKREAAGEKEKAPRRERKPKPKAPRKKRKPRAQKPEPQHTPVSDISELTVGQAVKVK 176
Score = 38.4 bits (90), Expect = 0.018
Identities = 10/51 (19%), Positives = 28/51 (54%)
Query: 1599 KKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGGGGEKELVQK 1649
K K + ++ +++ KK++ +K+K ++++K K K R+ ++ +
Sbjct: 107 KAKVQAQRAEQQAKKREAAGEKEKAPRRERKPKPKAPRKKRKPRAQKPEPQ 157
Score = 37.6 bits (88), Expect = 0.032
Identities = 10/47 (21%), Positives = 26/47 (55%)
Query: 1598 KKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGGGGEK 1644
K K + ++ ++ KK++ +K+K ++++K K K ++ +K
Sbjct: 107 KAKVQAQRAEQQAKKREAAGEKEKAPRRERKPKPKAPRKKRKPRAQK 153
>gnl|CDD|222636 pfam14265, DUF4355, Domain of unknown function (DUF4355). This
family of proteins is found in bacteria and viruses.
Proteins in this family are typically between 180 and 214
amino acids in length.
Length = 125
Score = 49.2 bits (118), Expect = 8e-07
Identities = 14/55 (25%), Positives = 32/55 (58%)
Query: 1579 RGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
E K K+K K +KK+++KK + +K K ++K + + +K +K+ ++ + +
Sbjct: 10 DKEVDKAIAKEKAKWEKKQEEKKSEAEKLAKMSAEEKAEYELEKLEKELEELEAE 64
Score = 46.5 bits (111), Expect = 9e-06
Identities = 12/51 (23%), Positives = 32/51 (62%)
Query: 1583 KKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
K+K K +KK+++KK + +K K ++K + + +K +K+ ++ + + ++
Sbjct: 18 AKEKAKWEKKQEEKKSEAEKLAKMSAEEKAEYELEKLEKELEELEAELARR 68
Score = 46.1 bits (110), Expect = 9e-06
Identities = 12/54 (22%), Positives = 32/54 (59%)
Query: 1584 KKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSRE 1637
K+K K +KK+++KK + +K K ++K + + +K +K+ ++ + + + +
Sbjct: 18 AKEKAKWEKKQEEKKSEAEKLAKMSAEEKAEYELEKLEKELEELEAELARRELK 71
Score = 45.7 bits (109), Expect = 2e-05
Identities = 15/53 (28%), Positives = 30/53 (56%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
EK K+ K K+K K +KK+++ K + +K K ++K + + +K +K+
Sbjct: 5 EKTFTDKEVDKAIAKEKAKWEKKQEEKKSEAEKLAKMSAEEKAEYELEKLEKE 57
Score = 44.9 bits (107), Expect = 3e-05
Identities = 16/53 (30%), Positives = 30/53 (56%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
E+K K+ K K+K K +KK++ KK + +K K ++K + + +K +K
Sbjct: 4 EEKTFTDKEVDKAIAKEKAKWEKKQEEKKSEAEKLAKMSAEEKAEYELEKLEK 56
Score = 44.6 bits (106), Expect = 4e-05
Identities = 12/52 (23%), Positives = 33/52 (63%)
Query: 1582 KKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
K+K K +KK+++KK + +K K ++K + + +K +K+ ++ + + +++
Sbjct: 18 AKEKAKWEKKQEEKKSEAEKLAKMSAEEKAEYELEKLEKELEELEAELARRE 69
Score = 43.8 bits (104), Expect = 6e-05
Identities = 12/52 (23%), Positives = 32/52 (61%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKK 1632
K+K K +KK+++KK + +K K +K + + +K +K+ ++ + + +++
Sbjct: 18 AKEKAKWEKKQEEKKSEAEKLAKMSAEEKAEYELEKLEKELEELEAELARRE 69
Score = 43.4 bits (103), Expect = 9e-05
Identities = 15/56 (26%), Positives = 33/56 (58%)
Query: 1582 KKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSRE 1637
K K+K K +KK+++KK + +K K ++K + + +K +K+ ++ + + RE
Sbjct: 14 DKAIAKEKAKWEKKQEEKKSEAEKLAKMSAEEKAEYELEKLEKELEELEAELARRE 69
Score = 43.4 bits (103), Expect = 1e-04
Identities = 14/59 (23%), Positives = 34/59 (57%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGG 1639
+KK+++KK + +K K ++K + +K +K+ ++ + + +++ K + KK E G
Sbjct: 24 WEKKQEEKKSEAEKLAKMSAEEKAEYELEKLEKELEELEAELARRELKAEAKKMLSEKG 82
Score = 43.4 bits (103), Expect = 1e-04
Identities = 14/53 (26%), Positives = 29/53 (54%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
+++K K+ K K+K K +KK ++KK + +K K ++K + + +K
Sbjct: 2 PEEEKTFTDKEVDKAIAKEKAKWEKKQEEKKSEAEKLAKMSAEEKAEYELEKL 54
Score = 43.4 bits (103), Expect = 1e-04
Identities = 14/61 (22%), Positives = 38/61 (62%)
Query: 1573 LARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKK 1632
+A+ + + EKK+++KK + +K K ++K + + +K +K+ ++ + + +++ K + KK
Sbjct: 17 IAKEKAKWEKKQEEKKSEAEKLAKMSAEEKAEYELEKLEKELEELEAELARRELKAEAKK 76
Query: 1633 K 1633
Sbjct: 77 M 77
Score = 43.0 bits (102), Expect = 1e-04
Identities = 15/54 (27%), Positives = 31/54 (57%)
Query: 1584 KKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSRE 1637
K+ K K+K K +KK+++KK +K K ++K + + +K +K+ ++ E
Sbjct: 11 KEVDKAIAKEKAKWEKKQEEKKSEAEKLAKMSAEEKAEYELEKLEKELEELEAE 64
Score = 41.9 bits (99), Expect = 3e-04
Identities = 15/57 (26%), Positives = 32/57 (56%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSRE 1637
E +++K K+ K K+K K +K +++KK + +K K ++K + + +K +E
Sbjct: 1 EPEEEKTFTDKEVDKAIAKEKAKWEKKQEEKKSEAEKLAKMSAEEKAEYELEKLEKE 57
Score = 40.7 bits (96), Expect = 0.001
Identities = 13/69 (18%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 1567 SYIVDLLARREGRGEKKKKKKKKKKKKKKKKKKK--KKKKKKYKKKKKKKKKKKKKKKKK 1624
++ + + + + K +KK+++KK + +K K ++K +Y+ +K +K+ ++ + +
Sbjct: 7 TFTDKEVDKAIAKEKAKWEKKQEEKKSEAEKLAKMSAEEKAEYELEKLEKELEELEAELA 66
Query: 1625 KKKKKKKKK 1633
+++ K + K
Sbjct: 67 RRELKAEAK 75
Score = 37.2 bits (87), Expect = 0.015
Identities = 15/69 (21%), Positives = 36/69 (52%)
Query: 1565 LGSYIVDLLARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKK 1624
+ I A+ E + E+KK + +K K ++K + + +K K+ ++ + + +++ K
Sbjct: 13 VDKAIAKEKAKWEKKQEEKKSEAEKLAKMSAEEKAEYELEKLEKELEELEAELARRELKA 72
Query: 1625 KKKKKKKKK 1633
+ KK +K
Sbjct: 73 EAKKMLSEK 81
Score = 36.5 bits (85), Expect = 0.021
Identities = 11/55 (20%), Positives = 29/55 (52%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYS 1635
EKK + +K K ++K + + +K + + ++ + + +++ K + KK +K
Sbjct: 30 EKKSEAEKLAKMSAEEKAEYELEKLEKELEELEAELARRELKAEAKKMLSEKGLP 84
Score = 36.1 bits (84), Expect = 0.029
Identities = 10/59 (16%), Positives = 30/59 (50%)
Query: 1574 ARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKK 1632
++ +K + +K K ++K + + +K +K ++ + + +++ K + KK +K
Sbjct: 24 WEKKQEEKKSEAEKLAKMSAEEKAEYELEKLEKELEELEAELARRELKAEAKKMLSEKG 82
>gnl|CDD|150884 pfam10278, Med19, Mediator of RNA pol II transcription subunit 19.
Med19 represents a family of conserved proteins which are
members of the multi-protein co-activator Mediator
complex. Mediator is required for activation of RNA
polymerase II transcription by DNA binding
transactivators.
Length = 178
Score = 50.6 bits (121), Expect = 1e-06
Identities = 29/70 (41%), Positives = 39/70 (55%), Gaps = 8/70 (11%)
Query: 1581 EKKKKKKKKKKKKKKKKKK--------KKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKK 1632
KKK K K KK + + + K + K KKKK + K++KKKKK+KKKKKK
Sbjct: 108 PPKKKHKHKHKKHRTQDPLPEETPSDSEGLKGHEKKHKKKKHEDDKERKKKKKEKKKKKK 167
Query: 1633 KYSREGGGGG 1642
++S E G G
Sbjct: 168 RHSPEHPGVG 177
Score = 47.9 bits (114), Expect = 8e-06
Identities = 26/67 (38%), Positives = 36/67 (53%), Gaps = 6/67 (8%)
Query: 1576 REGRGEKKKKKKKKKKKKKKKKKKKKK------KKKKYKKKKKKKKKKKKKKKKKKKKKK 1629
R + KKK K K KK + + + + K +KK KKKK + K++KKKKK+
Sbjct: 102 RLMHIQPPKKKHKHKHKKHRTQDPLPEETPSDSEGLKGHEKKHKKKKHEDDKERKKKKKE 161
Query: 1630 KKKKYSR 1636
KKKK R
Sbjct: 162 KKKKKKR 168
Score = 45.2 bits (107), Expect = 7e-05
Identities = 18/33 (54%), Positives = 23/33 (69%)
Query: 1577 EGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKK 1609
EKK KKKK + K++KKKKK+KKKKK +
Sbjct: 137 LKGHEKKHKKKKHEDDKERKKKKKEKKKKKKRH 169
Score = 44.0 bits (104), Expect = 1e-04
Identities = 19/37 (51%), Positives = 26/37 (70%)
Query: 1577 EGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKK 1613
+ G K +KK KKKK + K++KKKKK+K KKKK+
Sbjct: 133 DSEGLKGHEKKHKKKKHEDDKERKKKKKEKKKKKKRH 169
Score = 42.5 bits (100), Expect = 5e-04
Identities = 19/41 (46%), Positives = 27/41 (65%)
Query: 1577 EGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKK 1617
E + + K +KK KKKK + K++KKK K+KKKKKK+
Sbjct: 129 ETPSDSEGLKGHEKKHKKKKHEDDKERKKKKKEKKKKKKRH 169
Score = 31.3 bits (71), Expect = 2.5
Identities = 13/22 (59%), Positives = 17/22 (77%)
Query: 1575 RREGRGEKKKKKKKKKKKKKKK 1596
+ E E+KKKKK+KKKKKK+
Sbjct: 148 KHEDDKERKKKKKEKKKKKKRH 169
Score = 31.0 bits (70), Expect = 3.1
Identities = 12/25 (48%), Positives = 20/25 (80%)
Query: 1575 RREGRGEKKKKKKKKKKKKKKKKKK 1599
+++ + K++KKKKK+KKKKKK+
Sbjct: 145 KKKKHEDDKERKKKKKEKKKKKKRH 169
>gnl|CDD|235401 PRK05306, infB, translation initiation factor IF-2; Validated.
Length = 746
Score = 52.9 bits (128), Expect = 1e-06
Identities = 23/64 (35%), Positives = 40/64 (62%)
Query: 1574 ARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
R + + KKKK K KKKK K+K + K+ K +++++ +++++KKKKK+K +K
Sbjct: 112 RRPKAKKAAKKKKGPKPKKKKPKRKAARGGKRGKGGKGRRRRRGRRRRRKKKKKQKPTEK 171
Query: 1634 YSRE 1637
RE
Sbjct: 172 IPRE 175
Score = 33.3 bits (77), Expect = 1.2
Identities = 8/63 (12%), Positives = 31/63 (49%)
Query: 1571 DLLARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKK 1630
+LL + + G + K ++++ +K++ K++ ++ K + ++ + +++ K +
Sbjct: 19 ELLEKLKELGIEVKSHSSTVEEEEARKEEAKREAEEEAKAEAEEAAAAEAEEEAKAEAAA 78
Query: 1631 KKK 1633
Sbjct: 79 AAP 81
>gnl|CDD|236048 PRK07561, PRK07561, DNA topoisomerase I subunit omega; Validated.
Length = 859
Score = 52.9 bits (128), Expect = 1e-06
Identities = 10/44 (22%), Positives = 18/44 (40%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKK 1624
+K +K + K KK K+ +K K++ +K K
Sbjct: 815 AEKPEKLRYLADAPAKDPAGKKAAVKFSRKTKQQYVASEKDGKA 858
Score = 52.1 bits (126), Expect = 2e-06
Identities = 11/48 (22%), Positives = 18/48 (37%)
Query: 1570 VDLLARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKK 1617
++LLA + + K KK K +K K+ +K K
Sbjct: 811 LELLAEKPEKLRYLADAPAKDPAGKKAAVKFSRKTKQQYVASEKDGKA 858
Score = 51.3 bits (124), Expect = 5e-06
Identities = 11/49 (22%), Positives = 17/49 (34%)
Query: 1572 LLARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKK 1620
L + EK + K KK K +K K++ +K K
Sbjct: 810 ALELLAEKPEKLRYLADAPAKDPAGKKAAVKFSRKTKQQYVASEKDGKA 858
Score = 50.6 bits (122), Expect = 7e-06
Identities = 10/42 (23%), Positives = 16/42 (38%)
Query: 1591 KKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKK 1632
K +K + K KK K +K K++ +K K
Sbjct: 817 KPEKLRYLADAPAKDPAGKKAAVKFSRKTKQQYVASEKDGKA 858
Score = 50.2 bits (121), Expect = 9e-06
Identities = 10/42 (23%), Positives = 16/42 (38%)
Query: 1587 KKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKK 1628
K +K + K KK K +K K++ +K K
Sbjct: 817 KPEKLRYLADAPAKDPAGKKAAVKFSRKTKQQYVASEKDGKA 858
Score = 50.2 bits (121), Expect = 1e-05
Identities = 10/42 (23%), Positives = 16/42 (38%)
Query: 1586 KKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKK 1627
K +K + K KK K +K K++ +K K
Sbjct: 817 KPEKLRYLADAPAKDPAGKKAAVKFSRKTKQQYVASEKDGKA 858
Score = 49.8 bits (120), Expect = 1e-05
Identities = 10/42 (23%), Positives = 16/42 (38%)
Query: 1585 KKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKK 1626
K +K + K KK K +K K++ +K K
Sbjct: 817 KPEKLRYLADAPAKDPAGKKAAVKFSRKTKQQYVASEKDGKA 858
Score = 49.4 bits (119), Expect = 2e-05
Identities = 10/42 (23%), Positives = 16/42 (38%)
Query: 1592 KKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
K +K + K KK K +K K++ +K K
Sbjct: 817 KPEKLRYLADAPAKDPAGKKAAVKFSRKTKQQYVASEKDGKA 858
Score = 49.4 bits (119), Expect = 2e-05
Identities = 10/42 (23%), Positives = 16/42 (38%)
Query: 1590 KKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKK 1631
K +K + K KK K +K K++ +K K
Sbjct: 817 KPEKLRYLADAPAKDPAGKKAAVKFSRKTKQQYVASEKDGKA 858
Score = 48.6 bits (117), Expect = 3e-05
Identities = 9/42 (21%), Positives = 15/42 (35%)
Query: 1584 KKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKK 1625
K +K + K KK +K K++ +K K
Sbjct: 817 KPEKLRYLADAPAKDPAGKKAAVKFSRKTKQQYVASEKDGKA 858
Score = 48.6 bits (117), Expect = 3e-05
Identities = 9/42 (21%), Positives = 15/42 (35%)
Query: 1589 KKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKK 1630
K +K + K K K +K K++ +K K
Sbjct: 817 KPEKLRYLADAPAKDPAGKKAAVKFSRKTKQQYVASEKDGKA 858
Score = 47.9 bits (115), Expect = 4e-05
Identities = 9/42 (21%), Positives = 15/42 (35%)
Query: 1588 KKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKK 1629
K +K + K K K +K K++ +K K
Sbjct: 817 KPEKLRYLADAPAKDPAGKKAAVKFSRKTKQQYVASEKDGKA 858
Score = 44.0 bits (105), Expect = 8e-04
Identities = 10/37 (27%), Positives = 16/37 (43%)
Query: 1601 KKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSRE 1637
K +K +Y K KK K +K K++ + E
Sbjct: 817 KPEKLRYLADAPAKDPAGKKAAVKFSRKTKQQYVASE 853
Score = 41.7 bits (99), Expect = 0.004
Identities = 9/40 (22%), Positives = 16/40 (40%)
Query: 1599 KKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREG 1638
K +K + K KK K +K K++ ++G
Sbjct: 817 KPEKLRYLADAPAKDPAGKKAAVKFSRKTKQQYVASEKDG 856
>gnl|CDD|203848 pfam08079, Ribosomal_L30_N, Ribosomal L30 N-terminal domain. This
presumed domain is found at the N-terminus of Ribosomal
L30 proteins and has been termed RL30NT or NUC018.
Length = 71
Score = 46.8 bits (112), Expect = 2e-06
Identities = 17/43 (39%), Positives = 28/43 (65%)
Query: 1595 KKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSRE 1637
KK+K+ +K + K+ KK+ KK +KKK+K K+ +KY +E
Sbjct: 2 LLKKRKRNEKLRAKRAKKRAAKKAARKKKRKLIFKRAEKYVKE 44
Score = 43.0 bits (102), Expect = 4e-05
Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 5/58 (8%)
Query: 1591 KKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGGGGEKELVQ 1648
KK+K+ +K + K+ K+ KK +KKK+K K+ +K K+Y E++ ++
Sbjct: 2 LLKKRKRNEKLRAKRAKKRAAKKAARKKKRKLIFKRAEKYVKEYRAA-----ERDEIR 54
Score = 41.4 bits (98), Expect = 1e-04
Identities = 16/50 (32%), Positives = 29/50 (58%)
Query: 1582 KKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKK 1631
KK+K+ +K + K+ KK+ KK KKK+K K+ +K K+ + ++
Sbjct: 2 LLKKRKRNEKLRAKRAKKRAAKKAARKKKRKLIFKRAEKYVKEYRAAERD 51
Score = 40.7 bits (96), Expect = 2e-04
Identities = 17/55 (30%), Positives = 33/55 (60%)
Query: 1574 ARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKK 1628
+ R ++ KK+ KK +KKK+K K+ +KY K+ + ++ + + K++ KKK
Sbjct: 8 RNEKLRAKRAKKRAAKKAARKKKRKLIFKRAEKYVKEYRAAERDEIRLKREAKKK 62
Score = 40.3 bits (95), Expect = 3e-04
Identities = 16/50 (32%), Positives = 30/50 (60%)
Query: 1583 KKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKK 1632
KK+K+ +K + K+ KK+ KK +KKK+K K+ +K K+ + ++
Sbjct: 2 LLKKRKRNEKLRAKRAKKRAAKKAARKKKRKLIFKRAEKYVKEYRAAERD 51
Score = 39.9 bits (94), Expect = 5e-04
Identities = 16/50 (32%), Positives = 30/50 (60%)
Query: 1584 KKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
KK+K+ +K + K+ KK+ KK +KKK+K K+ +K K+ + ++
Sbjct: 2 LLKKRKRNEKLRAKRAKKRAAKKAARKKKRKLIFKRAEKYVKEYRAAERD 51
Score = 35.3 bits (82), Expect = 0.019
Identities = 18/61 (29%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Query: 1582 KKKKK--KKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGG 1639
KK+K+ K + K+ KK+ KK +KKK K K+ +K K+ + ++ + + K+ +++ G
Sbjct: 4 KKRKRNEKLRAKRAKKRAAKKAARKKKRKLIFKRAEKYVKEYRAAERDEIRLKREAKKKG 63
Query: 1640 G 1640
Sbjct: 64 N 64
>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein. TolA couples the inner membrane
complex of itself with TolQ and TolR to the outer
membrane complex of TolB and OprL (also called Pal). Most
of the length of the protein consists of low-complexity
sequence that may differ in both length and composition
from one species to another, complicating efforts to
discriminate TolA (the most divergent gene in the tol-pal
system) from paralogs such as TonB. Selection of members
of the seed alignment and criteria for setting scoring
cutoffs are based largely conserved operon struction.
//The Tol-Pal complex is required for maintaining outer
membrane integrity. Also involved in transport (uptake)
of colicins and filamentous DNA, and implicated in
pathogenesis. Transport is energized by the proton motive
force. TolA is an inner membrane protein that interacts
with periplasmic TolB and with outer membrane porins
ompC, phoE and lamB [Transport and binding proteins,
Other, Cellular processes, Pathogenesis].
Length = 346
Score = 51.8 bits (124), Expect = 2e-06
Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 5/69 (7%)
Query: 1574 ARREGRGEKK-----KKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKK 1628
A ++ ++K K K+ + K K + + +KK K++ KK+ +++ K K + KKK
Sbjct: 110 AAKQAEEKQKQAEEAKAKQAAEAKAKAEAEAEKKAKEEAKKQAEEEAKAKAAAEAKKKAA 169
Query: 1629 KKKKKYSRE 1637
+ KKK E
Sbjct: 170 EAKKKAEAE 178
Score = 51.0 bits (122), Expect = 3e-06
Identities = 18/60 (30%), Positives = 33/60 (55%)
Query: 1574 ARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
A+ + E K K + + +KK K++ KK+ +++ K + KKK + KKK + + K K
Sbjct: 124 AKAKQAAEAKAKAEAEAEKKAKEEAKKQAEEEAKAKAAAEAKKKAAEAKKKAEAEAKAKA 183
Score = 49.1 bits (117), Expect = 1e-05
Identities = 18/52 (34%), Positives = 28/52 (53%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKK 1632
E++ K K + KKK + KKK + + K K + K K K ++ K K + K K
Sbjct: 153 EEEAKAKAAAEAKKKAAEAKKKAEAEAKAKAEAKAKAKAEEAKAKAEAAKAK 204
Score = 48.7 bits (116), Expect = 2e-05
Identities = 18/52 (34%), Positives = 30/52 (57%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKK 1632
E + +KK K++ KK+ +++ K K KKK + KKK + + K K + K K
Sbjct: 137 EAEAEKKAKEEAKKQAEEEAKAKAAAEAKKKAAEAKKKAEAEAKAKAEAKAK 188
Score = 48.7 bits (116), Expect = 2e-05
Identities = 19/60 (31%), Positives = 34/60 (56%)
Query: 1574 ARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
A E + +++ KK+ +++ K K + KKK + KKK + + K K + K K K ++ K K
Sbjct: 138 AEAEKKAKEEAKKQAEEEAKAKAAAEAKKKAAEAKKKAEAEAKAKAEAKAKAKAEEAKAK 197
Score = 47.9 bits (114), Expect = 2e-05
Identities = 19/60 (31%), Positives = 30/60 (50%)
Query: 1574 ARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
A+++ E K K + KKK + KKK + + K K + K K K ++ K K + K K
Sbjct: 148 AKKQAEEEAKAKAAAEAKKKAAEAKKKAEAEAKAKAEAKAKAKAEEAKAKAEAAKAKAAA 207
Score = 47.1 bits (112), Expect = 5e-05
Identities = 20/57 (35%), Positives = 32/57 (56%)
Query: 1574 ARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKK 1630
A+ E EKK K++ KK+ +++ K K + KK + KKK + + K K + K K K
Sbjct: 134 AKAEAEAEKKAKEEAKKQAEEEAKAKAAAEAKKKAAEAKKKAEAEAKAKAEAKAKAK 190
Score = 46.0 bits (109), Expect = 1e-04
Identities = 18/64 (28%), Positives = 35/64 (54%)
Query: 1574 ARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
A ++ + E KK+ +++ K K + KKK + K K + + K K + K K K ++ K K +
Sbjct: 140 AEKKAKEEAKKQAEEEAKAKAAAEAKKKAAEAKKKAEAEAKAKAEAKAKAKAEEAKAKAE 199
Query: 1634 YSRE 1637
++
Sbjct: 200 AAKA 203
Score = 45.6 bits (108), Expect = 1e-04
Identities = 14/60 (23%), Positives = 35/60 (58%)
Query: 1574 ARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
R+ E++ +K K+ ++ K+ ++K+K+ ++ K K+ + K K + + +KK K++
Sbjct: 88 QARQKELEQRAAAEKAAKQAEQAAKQAEEKQKQAEEAKAKQAAEAKAKAEAEAEKKAKEE 147
Score = 45.6 bits (108), Expect = 1e-04
Identities = 14/56 (25%), Positives = 32/56 (57%), Gaps = 4/56 (7%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKK----KKYKKKKKKKKKKKKKKKKKKKKKKKKK 1632
++ +K K+ ++ K+ ++K+K K K+ + K K + + +KK K++ KK+
Sbjct: 96 QRAAAEKAAKQAEQAAKQAEEKQKQAEEAKAKQAAEAKAKAEAEAEKKAKEEAKKQ 151
Score = 45.6 bits (108), Expect = 2e-04
Identities = 16/58 (27%), Positives = 32/58 (55%), Gaps = 5/58 (8%)
Query: 1581 EKKKKKKKKKKK-----KKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
E+ K+ ++K+K K K+ + K K + +KK K++ KK+ +++ K K + K
Sbjct: 108 EQAAKQAEEKQKQAEEAKAKQAAEAKAKAEAEAEKKAKEEAKKQAEEEAKAKAAAEAK 165
Score = 45.6 bits (108), Expect = 2e-04
Identities = 19/70 (27%), Positives = 37/70 (52%), Gaps = 5/70 (7%)
Query: 1581 EKKKKKKKKKK-----KKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYS 1635
+ K+ ++K+K K K+ + K K + + +KK K++ KK+ +++ K K + KK +
Sbjct: 109 QAAKQAEEKQKQAEEAKAKQAAEAKAKAEAEAEKKAKEEAKKQAEEEAKAKAAAEAKKKA 168
Query: 1636 REGGGGGEKE 1645
E E E
Sbjct: 169 AEAKKKAEAE 178
Score = 45.2 bits (107), Expect = 2e-04
Identities = 17/53 (32%), Positives = 26/53 (49%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
E KKK + KKK + + K K + K K K ++ K K + K K + K +
Sbjct: 163 EAKKKAAEAKKKAEAEAKAKAEAKAKAKAEEAKAKAEAAKAKAAAEAAAKAEA 215
Score = 44.1 bits (104), Expect = 4e-04
Identities = 11/53 (20%), Positives = 32/53 (60%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
E+ ++K+ +++ +K K+ ++ K ++K+K+ ++ K K+ + K K + +
Sbjct: 87 EQARQKELEQRAAAEKAAKQAEQAAKQAEEKQKQAEEAKAKQAAEAKAKAEAE 139
Score = 44.1 bits (104), Expect = 4e-04
Identities = 14/63 (22%), Positives = 36/63 (57%)
Query: 1571 DLLARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKK 1630
A + + ++ K+ ++K+K+ ++ K K+ + K + + +KK K++ KK+ +++
Sbjct: 97 RAAAEKAAKQAEQAAKQAEEKQKQAEEAKAKQAAEAKAKAEAEAEKKAKEEAKKQAEEEA 156
Query: 1631 KKK 1633
K K
Sbjct: 157 KAK 159
Score = 44.1 bits (104), Expect = 4e-04
Identities = 14/53 (26%), Positives = 23/53 (43%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
E KKK + + K K + K K K ++ K K + K K + K + +
Sbjct: 170 EAKKKAEAEAKAKAEAKAKAKAEEAKAKAEAAKAKAAAEAAAKAEAEAAAAAA 222
Score = 44.1 bits (104), Expect = 5e-04
Identities = 15/58 (25%), Positives = 34/58 (58%)
Query: 1573 LARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKK 1630
L +R + K+ ++ K+ ++K+K+ ++ K K + K K + + +KK K++ KK+
Sbjct: 94 LEQRAAAEKAAKQAEQAAKQAEEKQKQAEEAKAKQAAEAKAKAEAEAEKKAKEEAKKQ 151
Score = 44.1 bits (104), Expect = 5e-04
Identities = 15/53 (28%), Positives = 26/53 (49%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
+KK + KKK + + K K + K K K ++ K K + K K + K + +
Sbjct: 165 KKKAAEAKKKAEAEAKAKAEAKAKAKAEEAKAKAEAAKAKAAAEAAAKAEAEA 217
Score = 43.3 bits (102), Expect = 8e-04
Identities = 15/61 (24%), Positives = 34/61 (55%)
Query: 1573 LARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKK 1632
E R +K K+ ++ K+ ++K+K+ ++ K+ + K K + + +KK K++ KK
Sbjct: 91 QKELEQRAAAEKAAKQAEQAAKQAEEKQKQAEEAKAKQAAEAKAKAEAEAEKKAKEEAKK 150
Query: 1633 K 1633
+
Sbjct: 151 Q 151
Score = 42.9 bits (101), Expect = 0.001
Identities = 14/69 (20%), Positives = 28/69 (40%)
Query: 1574 ARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
A+++ E K K + K K K ++ K K + K + K + + + ++K
Sbjct: 171 AKKKAEAEAKAKAEAKAKAKAEEAKAKAEAAKAKAAAEAAAKAEAEAAAAAAAEAERKAD 230
Query: 1634 YSREGGGGG 1642
+ G G
Sbjct: 231 EAELGDIFG 239
Score = 42.5 bits (100), Expect = 0.001
Identities = 15/62 (24%), Positives = 33/62 (53%)
Query: 1576 REGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYS 1635
+E +K K+ ++ K+ ++K+K+ + K K+ + K K + + +KK K++ K
Sbjct: 92 KELEQRAAAEKAAKQAEQAAKQAEEKQKQAEEAKAKQAAEAKAKAEAEAEKKAKEEAKKQ 151
Query: 1636 RE 1637
E
Sbjct: 152 AE 153
Score = 42.5 bits (100), Expect = 0.001
Identities = 13/61 (21%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKK----KKKKKKKKKKKKKKYSR 1636
EK++ ++ ++K+ +++ +K K+ ++ K+ ++K+K K K+ + K K +
Sbjct: 81 EKQRAAEQARQKELEQRAAAEKAAKQAEQAAKQAEEKQKQAEEAKAKQAAEAKAKAEAEA 140
Query: 1637 E 1637
E
Sbjct: 141 E 141
Score = 42.5 bits (100), Expect = 0.001
Identities = 13/60 (21%), Positives = 25/60 (41%)
Query: 1574 ARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
A+++ KKK + + K K + K K K ++ K + K K + K + +
Sbjct: 164 AKKKAAEAKKKAEAEAKAKAEAKAKAKAEEAKAKAEAAKAKAAAEAAAKAEAEAAAAAAA 223
Score = 41.7 bits (98), Expect = 0.002
Identities = 10/58 (17%), Positives = 37/58 (63%)
Query: 1574 ARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKK 1631
A ++ + +KK +++ ++ +K++ ++ ++K+ ++ +K K+ ++ K+ ++K+K
Sbjct: 62 AAKKEQERQKKLEQQAEEAEKQRAAEQARQKELEQRAAAEKAAKQAEQAAKQAEEKQK 119
Score = 41.7 bits (98), Expect = 0.002
Identities = 10/52 (19%), Positives = 36/52 (69%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKK 1632
E++KK +++ ++ +K++ ++ ++K+ +++ +K K+ ++ K+ ++K+K
Sbjct: 68 ERQKKLEQQAEEAEKQRAAEQARQKELEQRAAAEKAAKQAEQAAKQAEEKQK 119
Score = 41.7 bits (98), Expect = 0.002
Identities = 12/73 (16%), Positives = 41/73 (56%)
Query: 1577 EGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSR 1636
+ ++++KK +++ ++ +K++ ++ ++K +++ +K K+ ++ K+ ++K+K +
Sbjct: 63 AKKEQERQKKLEQQAEEAEKQRAAEQARQKELEQRAAAEKAAKQAEQAAKQAEEKQKQAE 122
Query: 1637 EGGGGGEKELVQK 1649
E E K
Sbjct: 123 EAKAKQAAEAKAK 135
Score = 41.4 bits (97), Expect = 0.003
Identities = 11/60 (18%), Positives = 24/60 (40%)
Query: 1574 ARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
E + + + + K K + K K K ++ K K + K K + K + + + +
Sbjct: 167 KAAEAKKKAEAEAKAKAEAKAKAKAEEAKAKAEAAKAKAAAEAAAKAEAEAAAAAAAEAE 226
Score = 41.4 bits (97), Expect = 0.003
Identities = 13/63 (20%), Positives = 24/63 (38%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGG 1640
+ K K + K K K ++ K K + K K + K + + + ++K E G
Sbjct: 177 AEAKAKAEAKAKAKAEEAKAKAEAAKAKAAAEAAAKAEAEAAAAAAAEAERKADEAELGD 236
Query: 1641 GGE 1643
Sbjct: 237 IFG 239
Score = 41.0 bits (96), Expect = 0.005
Identities = 10/57 (17%), Positives = 38/57 (66%)
Query: 1576 REGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKK 1632
R+ + E++ ++ +K++ ++ ++K+ +++ +K K+ ++ K+ ++K+K+ ++ K
Sbjct: 69 RQKKLEQQAEEAEKQRAAEQARQKELEQRAAAEKAAKQAEQAAKQAEEKQKQAEEAK 125
Score = 36.7 bits (85), Expect = 0.079
Identities = 13/74 (17%), Positives = 44/74 (59%)
Query: 1560 PSLKPLGSYIVDLLARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKK 1619
+ + + +VD A + +++KK KK+++++KK +++ ++ +K++ ++ ++K
Sbjct: 33 GGGEIIQAVLVDPGAVAQQANRIQQQKKPAAKKEQERQKKLEQQAEEAEKQRAAEQARQK 92
Query: 1620 KKKKKKKKKKKKKK 1633
+ +++ +K K+
Sbjct: 93 ELEQRAAAEKAAKQ 106
Score = 34.4 bits (79), Expect = 0.42
Identities = 9/50 (18%), Positives = 33/50 (66%)
Query: 1583 KKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKK 1632
+KK KK+++++KK +++ ++ + ++ ++ ++K+ +++ +K K+
Sbjct: 58 QKKPAAKKEQERQKKLEQQAEEAEKQRAAEQARQKELEQRAAAEKAAKQA 107
>gnl|CDD|218899 pfam06102, DUF947, Domain of unknown function (DUF947). Family of
eukaryotic proteins with unknown function.
Length = 168
Score = 49.6 bits (119), Expect = 2e-06
Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Query: 1575 RREGRGEKKKKKKKKKKKK--KKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKK 1632
+E + ++K+ K+ KK KK + KK KKK+ + KK K+ K +KK+KK K+K
Sbjct: 108 LKEHKKQEKELIKEGKKPYYLKKSEIKKLVLKKKFDELKKSKQLDKALEKKRKKNAGKEK 167
Query: 1633 K 1633
K
Sbjct: 168 K 168
Score = 47.7 bits (114), Expect = 7e-06
Identities = 19/54 (35%), Positives = 32/54 (59%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKY 1634
+ ++++ K+ KK++K+ K+ KK Y KK + KK KKK + KK K+ K
Sbjct: 101 KDREREILKEHKKQEKELIKEGKKPYYLKKSEIKKLVLKKKFDELKKSKQLDKA 154
Score = 47.3 bits (113), Expect = 8e-06
Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 4/69 (5%)
Query: 1573 LARREGRGEKKKKKKKKKKKKKKKKKK----KKKKKKKYKKKKKKKKKKKKKKKKKKKKK 1628
L ++ E K+ KK++K+ K+ KK KK + KK KKK + KK K+ K +K
Sbjct: 98 LKNKDREREILKEHKKQEKELIKEGKKPYYLKKSEIKKLVLKKKFDELKKSKQLDKALEK 157
Query: 1629 KKKKKYSRE 1637
K+KK +E
Sbjct: 158 KRKKNAGKE 166
Score = 39.2 bits (92), Expect = 0.006
Identities = 16/70 (22%), Positives = 41/70 (58%), Gaps = 5/70 (7%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGG 1640
+ ++K+ ++ +K KK K ++K++ K+ + K + K K K ++++ K++ ++
Sbjct: 58 DDYREKEIEELEKALKKTKDSEEKEELKRTLQSMKSRLKTLKNKDREREILKEHKKQ--- 114
Query: 1641 GGEKELVQKN 1650
EKEL+++
Sbjct: 115 --EKELIKEG 122
Score = 38.4 bits (90), Expect = 0.009
Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 1583 KKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKK--KKKKKKKKKKKKKKYS 1635
KK K ++K++ K+ + K + K K K ++++ K KK++K+ K+ KK Y
Sbjct: 73 KKTKDSEEKEELKRTLQSMKSRLKTLKNKDREREILKEHKKQEKELIKEGKKPYY 127
Score = 31.9 bits (73), Expect = 1.5
Identities = 16/41 (39%), Positives = 23/41 (56%)
Query: 1573 LARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKK 1613
L + E + KKK + KK K+ K +KK+KK K+KK
Sbjct: 128 LKKSEIKKLVLKKKFDELKKSKQLDKALEKKRKKNAGKEKK 168
>gnl|CDD|217834 pfam03998, Utp11, Utp11 protein. This protein is found to be part of
a large ribonucleoprotein complex containing the U3
snoRNA. Depletion of the Utp proteins impedes production
of the 18S rRNA, indicating that they are part of the
active pre-rRNA processing complex. This large RNP
complex has been termed the small subunit (SSU)
processome.
Length = 239
Score = 49.7 bits (119), Expect = 4e-06
Identities = 29/89 (32%), Positives = 49/89 (55%), Gaps = 10/89 (11%)
Query: 1571 DLLARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKK----------K 1620
+LL RRE R + +K +K+KKK KKK+K YK+ K++K+++KK +
Sbjct: 148 ELLDRRENRPRISQLEKTSLVDEKQKKKSAKKKRKLYKELKERKEREKKLKKVEQRLELQ 207
Query: 1621 KKKKKKKKKKKKKYSREGGGGGEKELVQK 1649
++ KK K KKKK ++ G + ++
Sbjct: 208 RELMKKGKGKKKKIVKDKDGKVVYKWKKE 236
Score = 43.9 bits (104), Expect = 3e-04
Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 11/65 (16%)
Query: 1579 RGEKKKKKKKKKKKKKKKKKKK-----------KKKKKKYKKKKKKKKKKKKKKKKKKKK 1627
+ KKK+K K+ K++K+++KK ++ KK K KKKK K K K K K
Sbjct: 175 KSAKKKRKLYKELKERKEREKKLKKVEQRLELQRELMKKGKGKKKKIVKDKDGKVVYKWK 234
Query: 1628 KKKKK 1632
K++K+
Sbjct: 235 KERKR 239
Score = 41.2 bits (97), Expect = 0.002
Identities = 20/54 (37%), Positives = 32/54 (59%)
Query: 1572 LLARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKK 1625
L R+ R +K KK +++ + +++ KK K KKKK K K K K KK++K+
Sbjct: 186 ELKERKEREKKLKKVEQRLELQRELMKKGKGKKKKIVKDKDGKVVYKWKKERKR 239
Score = 30.4 bits (69), Expect = 7.2
Identities = 15/37 (40%), Positives = 19/37 (51%)
Query: 1570 VDLLARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKK 1606
L +RE + K KKKK K K K K KK++K
Sbjct: 202 QRLELQRELMKKGKGKKKKIVKDKDGKVVYKWKKERK 238
Score = 30.0 bits (68), Expect = 9.4
Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 12/65 (18%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYK------------KKKKKKKKKKKKKKKKKKKK 1628
EKKK K + K KK+K K K+K K K+++K+
Sbjct: 20 EKKKDYKLRAKDYHKKEKTLKALKEKAAERNPDEFYFGMISSKTDDGVHILKREEKEVLS 79
Query: 1629 KKKKK 1633
K++ K
Sbjct: 80 KEQVK 84
>gnl|CDD|221028 pfam11208, DUF2992, Protein of unknown function (DUF2992). This
bacterial family of proteins has no known function.
However, the cis-regulatory yjdF motif, just upstream
from the gene encoding the proteins for this family, is a
small non-coding RNA, Rfam:RF01764. The yjdF motif is
found in many Firmicutes, including Bacillus subtilis. In
most cases, it resides in potential 5' UTRs of homologues
of the yjdF gene whose function is unknown. However, in
Streptococcus thermophilus, a yjdF RNA motif is
associated with an operon whose protein products
synthesise nicotinamide adenine dinucleotide (NAD+).
Also, the S. thermophilus yjdF RNA lacks typical yjdF
motif consensus features downstream of and including the
P4 stem. Thus, if yjdF RNAs are riboswitch aptamers, the
S. thermophilus RNAs might sense a distinct compound that
structurally resembles the ligand bound by other yjdF
RNAs. On the ohter hand, perhaps these RNAs have an
alternative solution forming a similar binding site, as
is observed with some SAM riboswitches.
Length = 132
Score = 47.2 bits (113), Expect = 4e-06
Identities = 20/61 (32%), Positives = 40/61 (65%), Gaps = 3/61 (4%)
Query: 1574 ARREGRGEKKKKKKKKKKK---KKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKK 1630
+R+ E KK K + K + ++ K++KKK+ K+KK+++K++K++ K++KKK K
Sbjct: 70 LQRQAAKEVKKPGISTKAQQALKLEHERNKQEKKKRSKEKKEEEKERKRQLKQQKKKAKH 129
Query: 1631 K 1631
+
Sbjct: 130 R 130
Score = 31.8 bits (73), Expect = 1.1
Identities = 17/56 (30%), Positives = 32/56 (57%)
Query: 1582 KKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSRE 1637
+ K KK+KK K+ +++ K+ KK K ++ K + ++ K++KKK S+E
Sbjct: 53 EAVKVSIKKQKKINPKRLQRQAAKEVKKPGISTKAQQALKLEHERNKQEKKKRSKE 108
>gnl|CDD|219924 pfam08597, eIF3_subunit, Translation initiation factor eIF3 subunit.
This is a family of proteins which are subunits of the
eukaryotic translation initiation factor 3 (eIF3). In
yeast it is called Hcr1. The Saccharomyces cerevisiae
protein eIF3j (HCR1) has been shown to be required for
processing of 20S pre-rRNA and binds to 18S rRNA and eIF3
subunits Rpg1p and Prt1p.
Length = 242
Score = 49.3 bits (118), Expect = 6e-06
Identities = 15/45 (33%), Positives = 30/45 (66%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKK 1625
E+ ++K+++K K K K KK K K ++K+K K++K++K ++
Sbjct: 40 EEDEEKEEEKAKVAAKAKAKKALKAKIEEKEKAKREKEEKGLREL 84
Score = 45.8 bits (109), Expect = 8e-05
Identities = 14/47 (29%), Positives = 32/47 (68%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKK 1627
++++ ++K+++K K K K KK K K ++K+K K++K++K ++
Sbjct: 38 DEEEDEEKEEEKAKVAAKAKAKKALKAKIEEKEKAKREKEEKGLREL 84
Score = 37.3 bits (87), Expect = 0.038
Identities = 14/57 (24%), Positives = 29/57 (50%)
Query: 1574 ARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKK 1630
E K K KK K K ++K+K K++K+ K ++ ++ + + +K + +K
Sbjct: 45 KEEEKAKVAAKAKAKKALKAKIEEKEKAKREKEEKGLRELEEDTPEDELAEKLRLRK 101
Score = 35.8 bits (83), Expect = 0.11
Identities = 12/37 (32%), Positives = 14/37 (37%)
Query: 1599 KKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYS 1635
+K K +K K KKKK K K K Y
Sbjct: 192 NEKLKAEKAAKGGKKKKGKAKAKLNVGGANDDDDDYD 228
Score = 34.6 bits (80), Expect = 0.29
Identities = 9/35 (25%), Positives = 11/35 (31%)
Query: 1576 REGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKK 1610
+ + K KKKK K K K Y
Sbjct: 196 KAEKAAKGGKKKKGKAKAKLNVGGANDDDDDYDGY 230
Score = 34.6 bits (80), Expect = 0.30
Identities = 11/33 (33%), Positives = 13/33 (39%)
Query: 1584 KKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKK 1616
+K K +K K KKKK K K K
Sbjct: 192 NEKLKAEKAAKGGKKKKGKAKAKLNVGGANDDD 224
Score = 34.2 bits (79), Expect = 0.45
Identities = 12/32 (37%), Positives = 13/32 (40%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKK 1612
EK K +K K KKKK K K K
Sbjct: 193 EKLKAEKAAKGGKKKKGKAKAKLNVGGANDDD 224
Score = 33.9 bits (78), Expect = 0.52
Identities = 12/39 (30%), Positives = 14/39 (35%)
Query: 1596 KKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKY 1634
+K K +K K KKKK K K K Y
Sbjct: 192 NEKLKAEKAAKGGKKKKGKAKAKLNVGGANDDDDDYDGY 230
Score = 33.5 bits (77), Expect = 0.80
Identities = 12/42 (28%), Positives = 15/42 (35%)
Query: 1602 KKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGGGGE 1643
+K K +K K KKKK K K K G +
Sbjct: 192 NEKLKAEKAAKGGKKKKGKAKAKLNVGGANDDDDDYDGYDDD 233
Score = 33.1 bits (76), Expect = 0.83
Identities = 11/33 (33%), Positives = 13/33 (39%)
Query: 1583 KKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKK 1615
+K K +K K KKKK K K K
Sbjct: 192 NEKLKAEKAAKGGKKKKGKAKAKLNVGGANDDD 224
Score = 32.7 bits (75), Expect = 1.3
Identities = 11/33 (33%), Positives = 13/33 (39%)
Query: 1582 KKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKK 1614
+K K +K K KKKK K K K
Sbjct: 192 NEKLKAEKAAKGGKKKKGKAKAKLNVGGANDDD 224
Score = 32.3 bits (74), Expect = 1.5
Identities = 11/40 (27%), Positives = 13/40 (32%)
Query: 1595 KKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKY 1634
+K K +K K KKKK K K K
Sbjct: 192 NEKLKAEKAAKGGKKKKGKAKAKLNVGGANDDDDDYDGYD 231
Score = 32.3 bits (74), Expect = 1.5
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 1607 YKKKKKKKKKKKKKKKKKKKKKKK 1630
+K K +K K KKKK K K K
Sbjct: 191 INEKLKAEKAAKGGKKKKGKAKAK 214
Score = 32.3 bits (74), Expect = 1.7
Identities = 11/33 (33%), Positives = 13/33 (39%)
Query: 1588 KKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKK 1620
+K K +K K KKKK K K K
Sbjct: 192 NEKLKAEKAAKGGKKKKGKAKAKLNVGGANDDD 224
Score = 32.3 bits (74), Expect = 1.9
Identities = 11/33 (33%), Positives = 13/33 (39%)
Query: 1586 KKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKK 1618
+K K +K K KKKK K K K
Sbjct: 192 NEKLKAEKAAKGGKKKKGKAKAKLNVGGANDDD 224
Score = 31.6 bits (72), Expect = 2.7
Identities = 13/34 (38%), Positives = 15/34 (44%)
Query: 1598 KKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKK 1631
KK +K K +K K KKKK K K K
Sbjct: 181 KKVSSTLNVLINEKLKAEKAAKGGKKKKGKAKAK 214
Score = 31.6 bits (72), Expect = 3.1
Identities = 11/33 (33%), Positives = 13/33 (39%)
Query: 1590 KKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKK 1622
+K K +K K KKKK K K K
Sbjct: 192 NEKLKAEKAAKGGKKKKGKAKAKLNVGGANDDD 224
Score = 31.2 bits (71), Expect = 3.4
Identities = 10/33 (30%), Positives = 12/33 (36%)
Query: 1589 KKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKK 1621
+K K +K K KKKK K K
Sbjct: 192 NEKLKAEKAAKGGKKKKGKAKAKLNVGGANDDD 224
Score = 31.2 bits (71), Expect = 4.1
Identities = 10/33 (30%), Positives = 12/33 (36%)
Query: 1591 KKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKK 1623
+K K +K K KKK K K K
Sbjct: 192 NEKLKAEKAAKGGKKKKGKAKAKLNVGGANDDD 224
Score = 31.2 bits (71), Expect = 4.1
Identities = 10/34 (29%), Positives = 12/34 (35%)
Query: 1574 ARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKY 1607
A + +G KKKK K K K Y
Sbjct: 197 AEKAAKGGKKKKGKAKAKLNVGGANDDDDDYDGY 230
Score = 31.2 bits (71), Expect = 4.2
Identities = 10/33 (30%), Positives = 12/33 (36%)
Query: 1587 KKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKK 1619
+K K +K K KKKK K K
Sbjct: 192 NEKLKAEKAAKGGKKKKGKAKAKLNVGGANDDD 224
Score = 30.8 bits (70), Expect = 4.8
Identities = 10/33 (30%), Positives = 12/33 (36%)
Query: 1594 KKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKK 1626
+K K +K K KKK K K K
Sbjct: 192 NEKLKAEKAAKGGKKKKGKAKAKLNVGGANDDD 224
Score = 30.8 bits (70), Expect = 4.9
Identities = 10/33 (30%), Positives = 12/33 (36%)
Query: 1585 KKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKK 1617
+K K +K K KKKK K K
Sbjct: 192 NEKLKAEKAAKGGKKKKGKAKAKLNVGGANDDD 224
Score = 30.4 bits (69), Expect = 6.7
Identities = 10/33 (30%), Positives = 12/33 (36%)
Query: 1593 KKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKK 1625
+K K +K K K KK K K K
Sbjct: 192 NEKLKAEKAAKGGKKKKGKAKAKLNVGGANDDD 224
Score = 30.4 bits (69), Expect = 6.8
Identities = 10/33 (30%), Positives = 12/33 (36%)
Query: 1592 KKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKK 1624
+K K +K K KK K K K K
Sbjct: 192 NEKLKAEKAAKGGKKKKGKAKAKLNVGGANDDD 224
>gnl|CDD|240388 PTZ00372, PTZ00372, endonuclease 4-like protein; Provisional.
Length = 413
Score = 50.1 bits (120), Expect = 6e-06
Identities = 25/56 (44%), Positives = 33/56 (58%)
Query: 1582 KKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSRE 1637
KK KK+ K + KKK +KKKKKK +KK+ K + + K K KK KK KK +
Sbjct: 53 STKKDKKEDKNNESKKKSEKKKKKKKEKKEPKSEGETKLGFKTPKKSKKTKKKPPK 108
Score = 49.3 bits (118), Expect = 1e-05
Identities = 27/53 (50%), Positives = 33/53 (62%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
KK KK+ K + KKK +KKKKKKK KK+ K + + K K KK KK KKK
Sbjct: 53 STKKDKKEDKNNESKKKSEKKKKKKKEKKEPKSEGETKLGFKTPKKSKKTKKK 105
Score = 48.9 bits (117), Expect = 2e-05
Identities = 27/58 (46%), Positives = 35/58 (60%)
Query: 1580 GEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSRE 1637
+KK+ K + KKK +KKKKKKK+KK+ K + + K K KK KK KKK K E
Sbjct: 56 KDKKEDKNNESKKKSEKKKKKKKEKKEPKSEGETKLGFKTPKKSKKTKKKPPKPKPNE 113
Score = 48.9 bits (117), Expect = 2e-05
Identities = 22/55 (40%), Positives = 31/55 (56%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYS 1635
+ KK KK+ K + KKK +KK KKKK+KK+ K + + K K KK K +
Sbjct: 48 KVATTSTKKDKKEDKNNESKKKSEKKKKKKKEKKEPKSEGETKLGFKTPKKSKKT 102
Score = 47.8 bits (114), Expect = 3e-05
Identities = 26/58 (44%), Positives = 32/58 (55%)
Query: 1580 GEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSRE 1637
E K + KKK +KKKKKKK+KK+ K + K K KK KK KKK K K +
Sbjct: 59 KEDKNNESKKKSEKKKKKKKEKKEPKSEGETKLGFKTPKKSKKTKKKPPKPKPNEDVD 116
Score = 47.4 bits (113), Expect = 4e-05
Identities = 20/54 (37%), Positives = 29/54 (53%)
Query: 1580 GEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
+++ K KK KK+ K KKK +KKKKKKK+KK+ K + + K
Sbjct: 38 ILSTFSEEENKVATTSTKKDKKEDKNNESKKKSEKKKKKKKEKKEPKSEGETKL 91
Score = 47.4 bits (113), Expect = 5e-05
Identities = 24/52 (46%), Positives = 31/52 (59%)
Query: 1582 KKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
KK KK+ K + KKK +KKKKK K+KK+ K + + K K KK KK K
Sbjct: 52 TSTKKDKKEDKNNESKKKSEKKKKKKKEKKEPKSEGETKLGFKTPKKSKKTK 103
Score = 47.0 bits (112), Expect = 6e-05
Identities = 24/56 (42%), Positives = 32/56 (57%)
Query: 1580 GEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYS 1635
KKK +KKKKKKK+KK+ K + + K K KK KK KKK K K + ++
Sbjct: 65 ESKKKSEKKKKKKKEKKEPKSEGETKLGFKTPKKSKKTKKKPPKPKPNEDVDNAFN 120
Score = 47.0 bits (112), Expect = 7e-05
Identities = 36/115 (31%), Positives = 52/115 (45%), Gaps = 16/115 (13%)
Query: 1516 IIKKSLQEVRQAVKGLIVMSKELEEINTSIMFGKIPQAWASKSYPSLKPLGSYIVDLLAR 1575
K LQ + ++V+SKE ++T + A+ S K +
Sbjct: 16 TQKSKLQPISYIYSNVLVLSKE--ILSTFS---EEENKVATTSTKKDK-----------K 59
Query: 1576 REGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKK 1630
+ E KKK +KKKKKKK+KK+ K + + K K KK KK KKK K K +
Sbjct: 60 EDKNNESKKKSEKKKKKKKEKKEPKSEGETKLGFKTPKKSKKTKKKPPKPKPNED 114
Score = 44.7 bits (106), Expect = 3e-04
Identities = 20/52 (38%), Positives = 30/52 (57%)
Query: 1582 KKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
+++ K KK KK+ K + KKK +KKKKKKK+KK+ K + + K
Sbjct: 41 TFSEEENKVATTSTKKDKKEDKNNESKKKSEKKKKKKKEKKEPKSEGETKLG 92
Score = 43.9 bits (104), Expect = 5e-04
Identities = 22/65 (33%), Positives = 34/65 (52%)
Query: 1586 KKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGGGGEKE 1645
+++ K KK KK+ K + KKK +KKKKKKK+KK+ K + ++ G +K
Sbjct: 40 STFSEEENKVATTSTKKDKKEDKNNESKKKSEKKKKKKKEKKEPKSEGETKLGFKTPKKS 99
Query: 1646 LVQKN 1650
K
Sbjct: 100 KKTKK 104
Score = 43.6 bits (103), Expect = 7e-04
Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 7/61 (11%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKK-------KKKKKKKKKKKK 1633
+KKKKKK+KK+ K + + K K K KK KKK K K K + +K
Sbjct: 72 KKKKKKKEKKEPKSEGETKLGFKTPKKSKKTKKKPPKPKPNEDVDNAFNKIAELAEKSNV 131
Query: 1634 Y 1634
Y
Sbjct: 132 Y 132
Score = 43.2 bits (102), Expect = 0.001
Identities = 18/54 (33%), Positives = 28/54 (51%)
Query: 1585 KKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREG 1638
+++ K KK KK+ + KKK +KKKKKKK+KK+ K + +
Sbjct: 40 STFSEEENKVATTSTKKDKKEDKNNESKKKSEKKKKKKKEKKEPKSEGETKLGF 93
Score = 42.4 bits (100), Expect = 0.002
Identities = 20/52 (38%), Positives = 29/52 (55%)
Query: 1582 KKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
K+ +++ K KK KK K + KKK +KKKKKKK+KK+ K +
Sbjct: 35 SKEILSTFSEEENKVATTSTKKDKKEDKNNESKKKSEKKKKKKKEKKEPKSE 86
Score = 40.9 bits (96), Expect = 0.006
Identities = 20/59 (33%), Positives = 29/59 (49%)
Query: 1580 GEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREG 1638
K+ +++ K K KK+ K + KKK +KKKKKKK+KK+ EG
Sbjct: 29 SNVLVLSKEILSTFSEEENKVATTSTKKDKKEDKNNESKKKSEKKKKKKKEKKEPKSEG 87
Score = 40.1 bits (94), Expect = 0.009
Identities = 19/63 (30%), Positives = 29/63 (46%)
Query: 1588 KKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGGGGEKELV 1647
K+ +++ K KK KK+ K + KKK +KKKKKKK+K + G +
Sbjct: 35 SKEILSTFSEEENKVATTSTKKDKKEDKNNESKKKSEKKKKKKKEKKEPKSEGETKLGFK 94
Query: 1648 QKN 1650
Sbjct: 95 TPK 97
Score = 35.1 bits (81), Expect = 0.33
Identities = 14/58 (24%), Positives = 23/58 (39%)
Query: 1574 ARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKK 1631
+++ + E K + + K K KK KK KKK K + K + +K
Sbjct: 75 KKKKEKKEPKSEGETKLGFKTPKKSKKTKKKPPKPKPNEDVDNAFNKIAELAEKSNVY 132
Score = 32.4 bits (74), Expect = 2.4
Identities = 16/81 (19%), Positives = 30/81 (37%)
Query: 1565 LGSYIVDLLARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKK 1624
+ +L+ G +K K + K+ +++ K KK KK+
Sbjct: 1 FSLILCMILSFFSGTTQKSKLQPISYIYSNVLVLSKEILSTFSEEENKVATTSTKKDKKE 60
Query: 1625 KKKKKKKKKYSREGGGGGEKE 1645
K + KKK ++ EK+
Sbjct: 61 DKNNESKKKSEKKKKKKKEKK 81
>gnl|CDD|218188 pfam04641, Rtf2, Replication termination factor 2. It is vital for
effective cell-replication that replication is not
stalled at any point by, for instance, damaged bases.
Rtf2 stabilizes the replication fork stalled at the
site-specific replication barrier RTS1 by preventing
replication restart until completion of DNA synthesis by
a converging replication fork initiated at a flanking
origin. The RTS1 element terminates replication forks
that are moving in the cen2-distal direction while
allowing forks moving in the cen2-proximal direction to
pass through the region. Rtf2 contains a C2HC2 motif
related to the C3HC4 RING-finger motif, and would appear
to fold up, creating a RING finger-like structure but
forming only one functional Zn2+ ion-binding site.
Length = 254
Score = 49.3 bits (118), Expect = 7e-06
Identities = 21/61 (34%), Positives = 26/61 (42%)
Query: 1572 LLARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKK 1631
L AR E KKKKKKKKKK KK + + + + KK KKK+
Sbjct: 172 LKARLEEERAKKKKKKKKKKTKKNNATGSSAEATVSSAVPTELSSGAGQVGEAKKLKKKR 231
Query: 1632 K 1632
Sbjct: 232 S 232
Score = 48.5 bits (116), Expect = 1e-05
Identities = 19/55 (34%), Positives = 25/55 (45%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYS 1635
E++ KKKKKKKKKK KK + + + + KK KKK S
Sbjct: 178 EERAKKKKKKKKKKTKKNNATGSSAEATVSSAVPTELSSGAGQVGEAKKLKKKRS 232
Score = 47.3 bits (113), Expect = 3e-05
Identities = 17/68 (25%), Positives = 26/68 (38%), Gaps = 5/68 (7%)
Query: 1572 LLARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKK---- 1627
L R + +KKKKKK KK + + + + KK KKK+
Sbjct: 176 LEEERAKKKKKKKKKKTKKNNATGSSAEATVSSAVPTELSSGAGQVGEAKKLKKKRSIAP 235
Query: 1628 -KKKKKKY 1634
+K + Y
Sbjct: 236 DNEKSEVY 243
Score = 47.3 bits (113), Expect = 3e-05
Identities = 18/56 (32%), Positives = 24/56 (42%)
Query: 1579 RGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKY 1634
R E+++ KKKKKKKKKK KK + + + KK KK
Sbjct: 175 RLEEERAKKKKKKKKKKTKKNNATGSSAEATVSSAVPTELSSGAGQVGEAKKLKKK 230
Score = 44.3 bits (105), Expect = 2e-04
Identities = 16/55 (29%), Positives = 24/55 (43%)
Query: 1582 KKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSR 1636
++++ KKKKKKKKKK KK + + + + KK K R
Sbjct: 177 EEERAKKKKKKKKKKTKKNNATGSSAEATVSSAVPTELSSGAGQVGEAKKLKKKR 231
Score = 40.4 bits (95), Expect = 0.004
Identities = 12/63 (19%), Positives = 24/63 (38%)
Query: 1571 DLLARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKK 1630
+ A+++ + +KKK KK + + + + KK KKK+
Sbjct: 178 EERAKKKKKKKKKKTKKNNATGSSAEATVSSAVPTELSSGAGQVGEAKKLKKKRSIAPDN 237
Query: 1631 KKK 1633
+K
Sbjct: 238 EKS 240
>gnl|CDD|219901 pfam08555, DUF1754, Eukaryotic family of unknown function (DUF1754).
This is a eukaryotic protein family of unknown function.
Length = 90
Score = 44.7 bits (106), Expect = 2e-05
Identities = 19/43 (44%), Positives = 27/43 (62%)
Query: 1584 KKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKK 1626
K K K KK KKKKKKKKKK K K++ +K++++K +
Sbjct: 7 GGKLKLKGKKIDVKKKKKKKKKKNKSKEEVVTEKEEEEKSSAE 49
Score = 44.7 bits (106), Expect = 2e-05
Identities = 19/44 (43%), Positives = 27/44 (61%)
Query: 1578 GRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKK 1621
G+ K K KK KKKKKKKKKK K K+ +K++++K +
Sbjct: 6 VGGKLKLKGKKIDVKKKKKKKKKKNKSKEEVVTEKEEEEKSSAE 49
Score = 43.9 bits (104), Expect = 3e-05
Identities = 20/58 (34%), Positives = 29/58 (50%)
Query: 1591 KKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGGGGEKELVQ 1648
K K K KK KKK KKKKKK K K++ +K++++K + + G E
Sbjct: 7 GGKLKLKGKKIDVKKKKKKKKKKNKSKEEVVTEKEEEEKSSAESDLKEGEEDEDNEKI 64
Score = 43.9 bits (104), Expect = 3e-05
Identities = 21/62 (33%), Positives = 31/62 (50%)
Query: 1588 KKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGGGGEKELV 1647
K K K KK KKKKKK KKK K K++ +K++++K + E EK
Sbjct: 7 GGKLKLKGKKIDVKKKKKKKKKKNKSKEEVVTEKEEEEKSSAESDLKEGEEDEDNEKIEQ 66
Query: 1648 QK 1649
++
Sbjct: 67 EE 68
Score = 42.8 bits (101), Expect = 7e-05
Identities = 22/62 (35%), Positives = 33/62 (53%)
Query: 1582 KKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGGG 1641
K K K KK KKKKKKKKKK K K++ +K++++K + K+ ++ E
Sbjct: 7 GGKLKLKGKKIDVKKKKKKKKKKNKSKEEVVTEKEEEEKSSAESDLKEGEEDEDNEKIEQ 66
Query: 1642 GE 1643
E
Sbjct: 67 EE 68
Score = 42.4 bits (100), Expect = 1e-04
Identities = 21/58 (36%), Positives = 35/58 (60%)
Query: 1583 KKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGG 1640
K KK KKKKKKKKKK K K++ +K++++K + K+ ++ + +K +E G
Sbjct: 13 KGKKIDVKKKKKKKKKKNKSKEEVVTEKEEEEKSSAESDLKEGEEDEDNEKIEQEEDG 70
Score = 41.6 bits (98), Expect = 2e-04
Identities = 21/58 (36%), Positives = 34/58 (58%)
Query: 1582 KKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGG 1639
K KK KKKKKKKKKK K K++ +K++++K + K+ ++ + +K E G
Sbjct: 13 KGKKIDVKKKKKKKKKKNKSKEEVVTEKEEEEKSSAESDLKEGEEDEDNEKIEQEEDG 70
Score = 32.8 bits (75), Expect = 0.25
Identities = 15/28 (53%), Positives = 16/28 (57%)
Query: 1606 KYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
+Y K K K KK KKKKKKKKK
Sbjct: 1 EYSNVVGGKLKLKGKKIDVKKKKKKKKK 28
>gnl|CDD|223880 COG0810, TonB, Periplasmic protein TonB, links inner and outer
membranes [Cell envelope biogenesis, outer membrane].
Length = 244
Score = 47.5 bits (113), Expect = 2e-05
Identities = 22/62 (35%), Positives = 27/62 (43%)
Query: 1576 REGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYS 1635
E K K+K K +KK KK K K K K K K K + K KK K K + +
Sbjct: 77 PEPTPPKPKEKPKPEKKPKKPKPKPKPKPKPKPKVKPQPKPKKPPSKTAAKAPAAPNQPA 136
Query: 1636 RE 1637
R
Sbjct: 137 RP 138
Score = 46.7 bits (111), Expect = 3e-05
Identities = 20/62 (32%), Positives = 26/62 (41%)
Query: 1577 EGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSR 1636
E E+ K + + + K K+K K KK KK K K K K K K K K + K
Sbjct: 61 EPPEEQPKPPTEPETPPEPTPPKPKEKPKPEKKPKKPKPKPKPKPKPKPKVKPQPKPKKP 120
Query: 1637 EG 1638
Sbjct: 121 PS 122
Score = 46.7 bits (111), Expect = 4e-05
Identities = 20/53 (37%), Positives = 25/53 (47%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
+ + K K+K K +KK KK K K K K K K K K + K KK K
Sbjct: 73 PETPPEPTPPKPKEKPKPEKKPKKPKPKPKPKPKPKPKVKPQPKPKKPPSKTA 125
Score = 46.7 bits (111), Expect = 4e-05
Identities = 21/52 (40%), Positives = 25/52 (48%)
Query: 1582 KKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
+ K K+K K +KK KK K K K K K K K K + K KK K K
Sbjct: 76 PPEPTPPKPKEKPKPEKKPKKPKPKPKPKPKPKPKVKPQPKPKKPPSKTAAK 127
Score = 46.3 bits (110), Expect = 5e-05
Identities = 20/58 (34%), Positives = 28/58 (48%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREG 1638
+ + + + K K+K K +KK KK K K K K K K K K + K KK S+
Sbjct: 68 KPPTEPETPPEPTPPKPKEKPKPEKKPKKPKPKPKPKPKPKPKVKPQPKPKKPPSKTA 125
Score = 45.5 bits (108), Expect = 8e-05
Identities = 17/53 (32%), Positives = 25/53 (47%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
+ +++ K + + + K K K K +KK KK K K K K K K K K
Sbjct: 60 PEPPEEQPKPPTEPETPPEPTPPKPKEKPKPEKKPKKPKPKPKPKPKPKPKVK 112
Score = 44.8 bits (106), Expect = 2e-04
Identities = 20/53 (37%), Positives = 24/53 (45%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
E + K K+K K +KK KK K K K K K K K + K KK K
Sbjct: 74 ETPPEPTPPKPKEKPKPEKKPKKPKPKPKPKPKPKPKVKPQPKPKKPPSKTAA 126
Score = 44.4 bits (105), Expect = 2e-04
Identities = 15/53 (28%), Positives = 26/53 (49%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
E + + + +++ K + + + K K+K K +KK KK K K K K K
Sbjct: 55 EPQPEPEPPEEQPKPPTEPETPPEPTPPKPKEKPKPEKKPKKPKPKPKPKPKP 107
Score = 44.0 bits (104), Expect = 3e-04
Identities = 16/53 (30%), Positives = 26/53 (49%)
Query: 1582 KKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKY 1634
+ + +++ K + + + K K+K K +KK KK K K K K K K K
Sbjct: 59 EPEPPEEQPKPPTEPETPPEPTPPKPKEKPKPEKKPKKPKPKPKPKPKPKPKV 111
Score = 42.9 bits (101), Expect = 8e-04
Identities = 15/53 (28%), Positives = 27/53 (50%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
E+ + + + +++ K + + + K K+K K +KK KK K K K K K
Sbjct: 54 EEPQPEPEPPEEQPKPPTEPETPPEPTPPKPKEKPKPEKKPKKPKPKPKPKPK 106
Score = 42.5 bits (100), Expect = 0.001
Identities = 16/52 (30%), Positives = 25/52 (48%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKK 1632
E + +++ K + + + K +K K +KK KK K K K K K K K
Sbjct: 59 EPEPPEEQPKPPTEPETPPEPTPPKPKEKPKPEKKPKKPKPKPKPKPKPKPK 110
Score = 42.5 bits (100), Expect = 0.001
Identities = 15/52 (28%), Positives = 26/52 (50%)
Query: 1582 KKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
+ + + +++ K + + + K K+K K +KK KK K K K K K K
Sbjct: 57 QPEPEPPEEQPKPPTEPETPPEPTPPKPKEKPKPEKKPKKPKPKPKPKPKPK 108
Score = 42.5 bits (100), Expect = 0.001
Identities = 14/53 (26%), Positives = 25/53 (47%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
+ + + +++ K + + + K+K K +KK KK K K K K K K
Sbjct: 57 QPEPEPPEEQPKPPTEPETPPEPTPPKPKEKPKPEKKPKKPKPKPKPKPKPKP 109
Score = 38.2 bits (89), Expect = 0.022
Identities = 13/53 (24%), Positives = 26/53 (49%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
++ + + + +++ K + + + K K+K K +KK KK K K K K
Sbjct: 53 TEEPQPEPEPPEEQPKPPTEPETPPEPTPPKPKEKPKPEKKPKKPKPKPKPKP 105
Score = 36.7 bits (85), Expect = 0.072
Identities = 13/53 (24%), Positives = 26/53 (49%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
E ++ + + + +++ K + + + K K+K K +KK KK K K K
Sbjct: 50 EAPTEEPQPEPEPPEEQPKPPTEPETPPEPTPPKPKEKPKPEKKPKKPKPKPK 102
Score = 36.3 bits (84), Expect = 0.100
Identities = 11/52 (21%), Positives = 25/52 (48%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKK 1632
+ ++ + + + +++ K + + + K K+K K +KK KK K K
Sbjct: 49 LEAPTEEPQPEPEPPEEQPKPPTEPETPPEPTPPKPKEKPKPEKKPKKPKPK 100
Score = 34.4 bits (79), Expect = 0.34
Identities = 16/68 (23%), Positives = 21/68 (30%)
Query: 1582 KKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGGG 1641
KK K K K K K K K K + K KK K K + + +
Sbjct: 95 KKPKPKPKPKPKPKPKVKPQPKPKKPPSKTAAKAPAAPNQPARPPSAASASGAATGPSAS 154
Query: 1642 GEKELVQK 1649
L +
Sbjct: 155 YLSGLRRA 162
>gnl|CDD|224415 COG1498, SIK1, Protein implicated in ribosomal biogenesis, Nop56p
homolog [Translation, ribosomal structure and
biogenesis].
Length = 395
Score = 48.5 bits (116), Expect = 2e-05
Identities = 22/86 (25%), Positives = 45/86 (52%), Gaps = 6/86 (6%)
Query: 1548 GKIPQAWASKSYPSLKPLGSYIVDLLARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKY 1607
GKI +A A+K + + +D + +++ +K+ +K K+K K K K
Sbjct: 314 GKIARALAAKLAIAAR------IDAFSGEPDGISLREELEKRIEKLKEKPPKPPTKAKPE 367
Query: 1608 KKKKKKKKKKKKKKKKKKKKKKKKKK 1633
+ KK++ + ++KKK+KK K +++
Sbjct: 368 RDKKERPGRYRRKKKEKKAKSERRGL 393
Score = 46.6 bits (111), Expect = 9e-05
Identities = 19/56 (33%), Positives = 33/56 (58%)
Query: 1570 VDLLARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKK 1625
+ L E R EK K+K K K K ++ KK++ +Y++KKK+KK K +++ +
Sbjct: 340 ISLREELEKRIEKLKEKPPKPPTKAKPERDKKERPGRYRRKKKEKKAKSERRGLQN 395
Score = 45.1 bits (107), Expect = 2e-04
Identities = 16/49 (32%), Positives = 30/49 (61%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKK 1629
EK+ +K K+K K K K ++ KK+ + ++KKK+KK K +++ +
Sbjct: 347 EKRIEKLKEKPPKPPTKAKPERDKKERPGRYRRKKKEKKAKSERRGLQN 395
Score = 40.5 bits (95), Expect = 0.007
Identities = 13/46 (28%), Positives = 30/46 (65%)
Query: 1592 KKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSRE 1637
+++ +K+ +K K+K K K K ++ KK++ + ++KKK+K ++
Sbjct: 343 REELEKRIEKLKEKPPKPPTKAKPERDKKERPGRYRRKKKEKKAKS 388
>gnl|CDD|236944 PRK11642, PRK11642, exoribonuclease R; Provisional.
Length = 813
Score = 48.6 bits (116), Expect = 3e-05
Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 10/70 (14%)
Query: 1574 ARREGRGEKKKKKKKKKKK----------KKKKKKKKKKKKKKYKKKKKKKKKKKKKKKK 1623
A++ G+K K+++ KK +KK K K KK K KK K +K
Sbjct: 742 AKKGDAGKKGGKRRQVGKKVNFEPDSAFRGEKKAKPKAAKKDARKAKKPSAKTQKIAAAT 801
Query: 1624 KKKKKKKKKK 1633
K K+ KKK
Sbjct: 802 KAKRAAKKKV 811
Score = 47.4 bits (113), Expect = 6e-05
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
Query: 1574 ARREGRGEKKKKKKKKKKKKKKKKKKKKKKK-----KKYKKKKKKKKKKKKKKKKKKKKK 1628
R G+ ++K KK KK K+++ KK ++ +KK K K KK +K KK
Sbjct: 731 PRNVGKTAREKAKKGDAGKKGGKRRQVGKKVNFEPDSAFRGEKKAKPKAAKKDARKAKKP 790
Query: 1629 KKKKK 1633
K +
Sbjct: 791 SAKTQ 795
Score = 46.7 bits (111), Expect = 1e-04
Identities = 19/43 (44%), Positives = 22/43 (51%)
Query: 1579 RGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKK 1621
RGEKK K K KK +K KK K +K K K+ KKK
Sbjct: 770 RGEKKAKPKAAKKDARKAKKPSAKTQKIAAATKAKRAAKKKVA 812
Score = 46.3 bits (110), Expect = 2e-04
Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 14/72 (19%)
Query: 1576 REGRGEKKKKKKKKKKKKKK---------KKKKKKKKKKKYKKKKKKKKKKKKKKK---- 1622
+ +G+ KK K+++ KK + +KK K K K +K KK K +K
Sbjct: 741 KAKKGDAGKKGGKRRQVGKKVNFEPDSAFRGEKKAKPKAAKKDARKAKKPSAKTQKIAAA 800
Query: 1623 -KKKKKKKKKKK 1633
K K+ KKK
Sbjct: 801 TKAKRAAKKKVA 812
Score = 46.3 bits (110), Expect = 2e-04
Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 7/61 (11%)
Query: 1574 ARREGRGEKKK-------KKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKK 1626
+R G+K + +KK K K KK +K KK K +K K K+ KKK
Sbjct: 752 GKRRQVGKKVNFEPDSAFRGEKKAKPKAAKKDARKAKKPSAKTQKIAAATKAKRAAKKKV 811
Query: 1627 K 1627
Sbjct: 812 A 812
Score = 45.9 bits (109), Expect = 2e-04
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Query: 1576 REGRGEKKKKKKKKKK---KKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKK 1632
R R K ++K KK KK K+++ KK ++ + +KK K K KK +K K
Sbjct: 729 RAPRNVGKTAREKAKKGDAGKKGGKRRQVGKKVNFEPDSAFRGEKKAKPKAAKKDARKAK 788
Query: 1633 KYS 1635
K S
Sbjct: 789 KPS 791
Score = 33.2 bits (76), Expect = 1.6
Identities = 16/58 (27%), Positives = 26/58 (44%)
Query: 1579 RGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSR 1636
R + K ++K KK KK K+++ KK + + +KK K K KK +
Sbjct: 729 RAPRNVGKTAREKAKKGDAGKKGGKRRQVGKKVNFEPDSAFRGEKKAKPKAAKKDARK 786
>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional.
Length = 509
Score = 48.1 bits (115), Expect = 3e-05
Identities = 16/52 (30%), Positives = 18/52 (34%)
Query: 1583 KKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKY 1634
KKK K K K KKK K + KK +KK K K
Sbjct: 72 SDIPKKKTKTAAKAAAAKAPAKKKLKDELDSSKKAEKKNALDKDDDLNYVKD 123
Score = 48.1 bits (115), Expect = 3e-05
Identities = 17/78 (21%), Positives = 27/78 (34%)
Query: 1555 ASKSYPSLKPLGSYIVDLLARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKK 1614
K+ + + ++ ++ + E KKK K K K KKK + K
Sbjct: 45 KKKTPEQIDQVLIFLSGMVKDTDDATESDIPKKKTKTAAKAAAAKAPAKKKLKDELDSSK 104
Query: 1615 KKKKKKKKKKKKKKKKKK 1632
K +KK K K
Sbjct: 105 KAEKKNALDKDDDLNYVK 122
Score = 47.3 bits (113), Expect = 5e-05
Identities = 14/53 (26%), Positives = 18/53 (33%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
+ + KKK K K K K K K + KK +KK K
Sbjct: 68 DATESDIPKKKTKTAAKAAAAKAPAKKKLKDELDSSKKAEKKNALDKDDDLNY 120
Score = 46.5 bits (111), Expect = 9e-05
Identities = 15/55 (27%), Positives = 19/55 (34%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYS 1635
+ + KKK K K K KK K + KK +KK K Y
Sbjct: 67 DDATESDIPKKKTKTAAKAAAAKAPAKKKLKDELDSSKKAEKKNALDKDDDLNYV 121
Score = 46.5 bits (111), Expect = 1e-04
Identities = 16/68 (23%), Positives = 20/68 (29%)
Query: 1570 VDLLARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKK 1629
+ + KKK K K K KKK K + KK +KK K
Sbjct: 61 GMVKDTDDATESDIPKKKTKTAAKAAAAKAPAKKKLKDELDSSKKAEKKNALDKDDDLNY 120
Query: 1630 KKKKYSRE 1637
K
Sbjct: 121 VKDIDVLN 128
Score = 45.0 bits (107), Expect = 3e-04
Identities = 15/57 (26%), Positives = 18/57 (31%)
Query: 1577 EGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
K + KKK K K K KKK K + KK +KK
Sbjct: 57 IFLSGMVKDTDDATESDIPKKKTKTAAKAAAAKAPAKKKLKDELDSSKKAEKKNALD 113
Score = 43.4 bits (103), Expect = 8e-04
Identities = 15/63 (23%), Positives = 20/63 (31%)
Query: 1571 DLLARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKK 1630
D + +K K K K KKK K + KK +KK K K
Sbjct: 67 DDATESDIPKKKTKTAAKAAAAKAPAKKKLKDELDSSKKAEKKNALDKDDDLNYVKDIDV 126
Query: 1631 KKK 1633
+
Sbjct: 127 LNQ 129
Score = 42.7 bits (101), Expect = 0.002
Identities = 13/63 (20%), Positives = 18/63 (28%)
Query: 1570 VDLLARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKK 1629
D + + K K K KKK K + K +KK K K
Sbjct: 67 DDATESDIPKKKTKTAAKAAAAKAPAKKKLKDELDSSKKAEKKNALDKDDDLNYVKDIDV 126
Query: 1630 KKK 1632
+
Sbjct: 127 LNQ 129
Score = 41.9 bits (99), Expect = 0.003
Identities = 12/54 (22%), Positives = 16/54 (29%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKY 1634
+ K K KKK K + KK +KK K K +
Sbjct: 80 KTAAKAAAAKAPAKKKLKDELDSSKKAEKKNALDKDDDLNYVKDIDVLNQADDD 133
Score = 41.9 bits (99), Expect = 0.003
Identities = 12/61 (19%), Positives = 16/61 (26%)
Query: 1573 LARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKK 1632
++ K K KKK K + KK KK K K +
Sbjct: 73 DIPKKKTKTAAKAAAAKAPAKKKLKDELDSSKKAEKKNALDKDDDLNYVKDIDVLNQADD 132
Query: 1633 K 1633
Sbjct: 133 D 133
Score = 41.5 bits (98), Expect = 0.004
Identities = 14/53 (26%), Positives = 17/53 (32%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
K + KKK K K K KKK K + KK +K
Sbjct: 56 LIFLSGMVKDTDDATESDIPKKKTKTAAKAAAAKAPAKKKLKDELDSSKKAEK 108
Score = 40.7 bits (96), Expect = 0.006
Identities = 11/61 (18%), Positives = 18/61 (29%)
Query: 1574 ARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
+++ + K K KKK K + KK + K K K +
Sbjct: 75 PKKKTKTAAKAAAAKAPAKKKLKDELDSSKKAEKKNALDKDDDLNYVKDIDVLNQADDDD 134
Query: 1634 Y 1634
Sbjct: 135 D 135
Score = 40.4 bits (95), Expect = 0.008
Identities = 13/51 (25%), Positives = 24/51 (47%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKK 1631
K + +++ KKK KK K K K++ K+ + KKK ++ +
Sbjct: 4 ASTKAELAAEEEAKKKLKKLAAKSKSKGFITKEEIKEALESKKKTPEQIDQ 54
Score = 40.4 bits (95), Expect = 0.008
Identities = 16/65 (24%), Positives = 27/65 (41%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGG 1640
K + +++ KKK KK K K K K++ K+ + KKK ++
Sbjct: 1 MTTASTKAELAAEEEAKKKLKKLAAKSKSKGFITKEEIKEALESKKKTPEQIDQVLIFLS 60
Query: 1641 GGEKE 1645
G K+
Sbjct: 61 GMVKD 65
Score = 40.0 bits (94), Expect = 0.010
Identities = 17/63 (26%), Positives = 21/63 (33%), Gaps = 10/63 (15%)
Query: 1581 EKKKKKKKKKK----------KKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKK 1630
E KKK ++ K + KKK K K K KKK K +
Sbjct: 43 ESKKKTPEQIDQVLIFLSGMVKDTDDATESDIPKKKTKTAAKAAAAKAPAKKKLKDELDS 102
Query: 1631 KKK 1633
KK
Sbjct: 103 SKK 105
Score = 38.8 bits (91), Expect = 0.025
Identities = 15/69 (21%), Positives = 30/69 (43%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGG 1640
E +++ KKK KK K K K ++ K+ + KKK ++ + ++
Sbjct: 9 ELAAEEEAKKKLKKLAAKSKSKGFITKEEIKEALESKKKTPEQIDQVLIFLSGMVKDTDD 68
Query: 1641 GGEKELVQK 1649
E ++ +K
Sbjct: 69 ATESDIPKK 77
Score = 38.4 bits (90), Expect = 0.036
Identities = 11/53 (20%), Positives = 14/53 (26%)
Query: 1582 KKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKY 1634
K KKK K + KK +KK K K +
Sbjct: 85 AAAAKAPAKKKLKDELDSSKKAEKKNALDKDDDLNYVKDIDVLNQADDDDDDD 137
Score = 38.1 bits (89), Expect = 0.038
Identities = 12/53 (22%), Positives = 18/53 (33%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
E K+ + KKK ++ + K + KKK K K K
Sbjct: 37 EIKEALESKKKTPEQIDQVLIFLSGMVKDTDDATESDIPKKKTKTAAKAAAAK 89
Score = 38.1 bits (89), Expect = 0.046
Identities = 16/72 (22%), Positives = 24/72 (33%), Gaps = 17/72 (23%)
Query: 1579 RGEKKKKKKKKKKKKKKKKKKKKKKKKKY-----------------KKKKKKKKKKKKKK 1621
+ + K K++ K+ + KKK ++ KKK K K
Sbjct: 26 KSKSKGFITKEEIKEALESKKKTPEQIDQVLIFLSGMVKDTDDATESDIPKKKTKTAAKA 85
Query: 1622 KKKKKKKKKKKK 1633
K KKK K
Sbjct: 86 AAAKAPAKKKLK 97
Score = 37.7 bits (88), Expect = 0.058
Identities = 12/66 (18%), Positives = 19/66 (28%)
Query: 1579 RGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREG 1638
+ + KKK ++ + K + KKK K K K K +
Sbjct: 39 KEALESKKKTPEQIDQVLIFLSGMVKDTDDATESDIPKKKTKTAAKAAAAKAPAKKKLKD 98
Query: 1639 GGGGEK 1644
K
Sbjct: 99 ELDSSK 104
Score = 37.3 bits (87), Expect = 0.076
Identities = 12/64 (18%), Positives = 17/64 (26%)
Query: 1569 IVDLLARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKK 1628
I + + K KKK K + KK +KK K K +
Sbjct: 74 IPKKKTKTAAKAAAAKAPAKKKLKDELDSSKKAEKKNALDKDDDLNYVKDIDVLNQADDD 133
Query: 1629 KKKK 1632
Sbjct: 134 DDDD 137
>gnl|CDD|222665 pfam14303, NAM-associated, No apical meristem-associated C-terminal
domain. This domain is found in a number of different
types of plant proteins including NAM-like proteins.
Length = 147
Score = 45.1 bits (107), Expect = 4e-05
Identities = 20/64 (31%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Query: 1574 ARREGR-GEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKK 1632
R EGR K+K ++ K K KK++ +K+K+K++++ K + +K++ + +KKK + K K
Sbjct: 60 KRPEGRKKAKEKLRRDKLKAKKEEAEKEKEKEERFMKALAEAEKERAELEKKKAEAKLMK 119
Query: 1633 KYSR 1636
+ +
Sbjct: 120 EEKK 123
Score = 38.9 bits (91), Expect = 0.005
Identities = 19/63 (30%), Positives = 39/63 (61%), Gaps = 2/63 (3%)
Query: 1577 EGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKK--KKKY 1634
E E K+ + +KK K+K ++ K K KK++ +K+K+K+++ K + +K++ + KKK
Sbjct: 54 ESTAESKRPEGRKKAKEKLRRDKLKAKKEEAEKEKEKEERFMKALAEAEKERAELEKKKA 113
Query: 1635 SRE 1637
+
Sbjct: 114 EAK 116
Score = 29.3 bits (66), Expect = 8.9
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 25/92 (27%)
Query: 1579 RGEKKKKKKKKKKKKKKKKKKKKKKKK-------------------------KYKKKKKK 1613
+ E K K K+ + KK KKKKK+ + K K+K
Sbjct: 13 KNEPKWKSKRSELKKASKKKKKRSNSSPGSTSNEENEDEDDESTAESKRPEGRKKAKEKL 72
Query: 1614 KKKKKKKKKKKKKKKKKKKKYSREGGGGGEKE 1645
++ K K KK++ +K+K+K++ + EKE
Sbjct: 73 RRDKLKAKKEEAEKEKEKEERFMKALAEAEKE 104
>gnl|CDD|240254 PTZ00069, PTZ00069, 60S ribosomal protein L5; Provisional.
Length = 300
Score = 47.0 bits (112), Expect = 4e-05
Identities = 23/52 (44%), Positives = 32/52 (61%)
Query: 1576 REGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKK 1627
R + KKKKKKKKK KK K KK K+ K + K KK +++++ +KK K
Sbjct: 249 RANPSKVKKKKKKKKKVVHKKYKTKKLTGKQRKARVKAKKAQRRERLQKKIK 300
Score = 46.6 bits (111), Expect = 6e-05
Identities = 23/47 (48%), Positives = 32/47 (68%)
Query: 1584 KKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKK 1630
K KKKKKKKKK KK K KK K++K + K KK +++++ +KK K
Sbjct: 254 KVKKKKKKKKKVVHKKYKTKKLTGKQRKARVKAKKAQRRERLQKKIK 300
Score = 46.6 bits (111), Expect = 7e-05
Identities = 23/47 (48%), Positives = 32/47 (68%)
Query: 1586 KKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKK 1632
K KKKKKKKKK KK K KK K++K + K KK +++++ +KK K
Sbjct: 254 KVKKKKKKKKKVVHKKYKTKKLTGKQRKARVKAKKAQRRERLQKKIK 300
Score = 46.2 bits (110), Expect = 8e-05
Identities = 23/48 (47%), Positives = 31/48 (64%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKK 1628
K KKKKKKKKK KK K KK K +K + K KK +++++ +KK K
Sbjct: 253 SKVKKKKKKKKKVVHKKYKTKKLTGKQRKARVKAKKAQRRERLQKKIK 300
Score = 46.2 bits (110), Expect = 9e-05
Identities = 23/47 (48%), Positives = 32/47 (68%)
Query: 1585 KKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKK 1631
K KKKKKKKKK KK K KK K++K + K KK +++++ +KK K
Sbjct: 254 KVKKKKKKKKKVVHKKYKTKKLTGKQRKARVKAKKAQRRERLQKKIK 300
Score = 46.2 bits (110), Expect = 9e-05
Identities = 21/49 (42%), Positives = 30/49 (61%)
Query: 1583 KKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKK 1631
+ K KKKKKKKKK KKYK KK K++K + K KK +++++
Sbjct: 246 AAIRANPSKVKKKKKKKKKVVHKKYKTKKLTGKQRKARVKAKKAQRRER 294
Score = 43.9 bits (104), Expect = 4e-04
Identities = 22/53 (41%), Positives = 32/53 (60%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
+ K KKKKKKKKK KK K KK K++K + K KK +++++ +KK
Sbjct: 246 AAIRANPSKVKKKKKKKKKVVHKKYKTKKLTGKQRKARVKAKKAQRRERLQKK 298
Score = 43.1 bits (102), Expect = 7e-04
Identities = 22/47 (46%), Positives = 31/47 (65%)
Query: 1587 KKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
K KKKKKKKKK KK K K K++K + K KK +++++ +KK K
Sbjct: 254 KVKKKKKKKKKVVHKKYKTKKLTGKQRKARVKAKKAQRRERLQKKIK 300
Score = 43.1 bits (102), Expect = 8e-04
Identities = 19/53 (35%), Positives = 29/53 (54%)
Query: 1584 KKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSR 1636
+ K KKKKKKKKK K K KK K++K + K KK +++++ +
Sbjct: 246 AAIRANPSKVKKKKKKKKKVVHKKYKTKKLTGKQRKARVKAKKAQRRERLQKK 298
Score = 42.7 bits (101), Expect = 0.001
Identities = 22/52 (42%), Positives = 31/52 (59%)
Query: 1582 KKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
KK + K KKKKKKKKK +KK K KK K++K + K KK ++++
Sbjct: 242 KKAHAAIRANPSKVKKKKKKKKKVVHKKYKTKKLTGKQRKARVKAKKAQRRE 293
Score = 42.0 bits (99), Expect = 0.002
Identities = 23/53 (43%), Positives = 29/53 (54%)
Query: 1584 KKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSR 1636
KK + K KKKKKKKKK KK K KK K++K + K KK ++ R
Sbjct: 242 KKAHAAIRANPSKVKKKKKKKKKVVHKKYKTKKLTGKQRKARVKAKKAQRRER 294
Score = 42.0 bits (99), Expect = 0.002
Identities = 22/54 (40%), Positives = 27/54 (50%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKY 1634
E KK + K KKKKKKKK KK K KK K++K + K KK +
Sbjct: 238 EDMYKKAHAAIRANPSKVKKKKKKKKKVVHKKYKTKKLTGKQRKARVKAKKAQR 291
Score = 41.2 bits (97), Expect = 0.003
Identities = 21/51 (41%), Positives = 30/51 (58%)
Query: 1574 ARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKK 1624
A +KKKKKKK KK K KK K++K K KK +++++ +KK K
Sbjct: 250 ANPSKVKKKKKKKKKVVHKKYKTKKLTGKQRKARVKAKKAQRRERLQKKIK 300
Score = 40.4 bits (95), Expect = 0.005
Identities = 22/51 (43%), Positives = 26/51 (50%)
Query: 1587 KKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSRE 1637
KK + K KKKKKK KK KK K KK K++K + K KK R
Sbjct: 242 KKAHAAIRANPSKVKKKKKKKKKVVHKKYKTKKLTGKQRKARVKAKKAQRR 292
Score = 39.3 bits (92), Expect = 0.014
Identities = 23/52 (44%), Positives = 27/52 (51%)
Query: 1586 KKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSRE 1637
KK + K KKKKKKK K KK K KK K++K + K KK RE
Sbjct: 242 KKAHAAIRANPSKVKKKKKKKKKVVHKKYKTKKLTGKQRKARVKAKKAQRRE 293
Score = 31.2 bits (71), Expect = 4.4
Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Query: 1576 REGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKK---KKKKKKKKKKKKKKKK 1632
++ + E K KK+ K K + YKK + K KKKKKKKKK KK
Sbjct: 210 KQLKEEDPDKYKKQFSKYIKAGVGPDSLEDMYKKAHAAIRANPSKVKKKKKKKKKVVHKK 269
Query: 1633 KYS 1635
+
Sbjct: 270 YKT 272
>gnl|CDD|218538 pfam05285, SDA1, SDA1. This family consists of several SDA1 protein
homologues. SDA1 is a Saccharomyces cerevisiae protein
which is involved in the control of the actin
cytoskeleton. The protein is essential for cell viability
and is localised in the nucleus.
Length = 317
Score = 47.0 bits (112), Expect = 6e-05
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 9/67 (13%)
Query: 1576 REGRGEKKKKKKKKKKKKK----KKKKKKK-----KKKKKYKKKKKKKKKKKKKKKKKKK 1626
RE R + +K KK K+ K K+K +KK KK+ + K+K+ + K+K +
Sbjct: 251 REDREKFGSRKGKKDKEGKSTTNKEKARKKNFMMTLHKKRVRGKQKRSLRDKQKVLRAHI 310
Query: 1627 KKKKKKK 1633
++KK
Sbjct: 311 LRQKKGG 317
Score = 36.6 bits (85), Expect = 0.11
Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 11/70 (15%)
Query: 1576 REGRGEKKKKKKKKKKKKKKKKKKKKKKKK----KYKKKKK-------KKKKKKKKKKKK 1624
+E R K+ ++ ++K +K KK K+ K K K +KK KK+ + K+K+
Sbjct: 240 KEERIATAKEGREDREKFGSRKGKKDKEGKSTTNKEKARKKNFMMTLHKKRVRGKQKRSL 299
Query: 1625 KKKKKKKKKY 1634
+ K+K + +
Sbjct: 300 RDKQKVLRAH 309
Score = 34.6 bits (80), Expect = 0.35
Identities = 16/47 (34%), Positives = 30/47 (63%)
Query: 1584 KKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKK 1630
KKKK+ K+++ K+ ++ ++K+ +K KK K+ K K+K +KK
Sbjct: 234 KKKKQTKEERIATAKEGREDREKFGSRKGKKDKEGKSTTNKEKARKK 280
Score = 32.3 bits (74), Expect = 1.8
Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 11/65 (16%)
Query: 1582 KKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKK------KKKKKKK-----KKKKKKKK 1630
KKKK+ K+++ K+ ++ ++K +K KK K+ K+K +KK KK+ +
Sbjct: 234 KKKKQTKEERIATAKEGREDREKFGSRKGKKDKEGKSTTNKEKARKKNFMMTLHKKRVRG 293
Query: 1631 KKKYS 1635
K+K S
Sbjct: 294 KQKRS 298
>gnl|CDD|184900 PRK14907, rplD, 50S ribosomal protein L4; Provisional.
Length = 295
Score = 46.5 bits (110), Expect = 7e-05
Identities = 24/67 (35%), Positives = 28/67 (41%)
Query: 1583 KKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGGGG 1642
++KK KK K+ K KK K K KK K KK K K KK E
Sbjct: 14 EEKKPAAKKATTSKETAKTKKTAKTTSTKAAKKAAKVKKTKSVKTTTKKVTVKFEKTESV 73
Query: 1643 EKELVQK 1649
+KE V K
Sbjct: 74 KKESVAK 80
Score = 45.3 bits (107), Expect = 2e-04
Identities = 22/57 (38%), Positives = 23/57 (40%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSRE 1637
EKK KK K+ K KK K K KK K KK K K KK K E
Sbjct: 15 EKKPAAKKATTSKETAKTKKTAKTTSTKAAKKAAKVKKTKSVKTTTKKVTVKFEKTE 71
Score = 44.9 bits (106), Expect = 2e-04
Identities = 20/52 (38%), Positives = 23/52 (44%)
Query: 1582 KKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
K ++KK KK K+ K KK K K KK K KK K K KK
Sbjct: 11 KTTEEKKPAAKKATTSKETAKTKKTAKTTSTKAAKKAAKVKKTKSVKTTTKK 62
Score = 44.6 bits (105), Expect = 3e-04
Identities = 21/51 (41%), Positives = 24/51 (47%)
Query: 1582 KKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKK 1632
KK KKK ++KK KK K+ K KK K K KK K KK K
Sbjct: 5 KKTTKKKTTEEKKPAAKKATTSKETAKTKKTAKTTSTKAAKKAAKVKKTKS 55
Score = 44.2 bits (104), Expect = 3e-04
Identities = 23/73 (31%), Positives = 30/73 (41%)
Query: 1577 EGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSR 1636
E + KKK ++KK KK K+ K K K K KK K KK K K +
Sbjct: 3 ETKKTTKKKTTEEKKPAAKKATTSKETAKTKKTAKTTSTKAAKKAAKVKKTKSVKTTTKK 62
Query: 1637 EGGGGGEKELVQK 1649
+ E V+K
Sbjct: 63 VTVKFEKTESVKK 75
Score = 43.4 bits (102), Expect = 7e-04
Identities = 21/56 (37%), Positives = 25/56 (44%)
Query: 1582 KKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSRE 1637
K KK K K KK K KK K K KK K +K + KK+ KK +E
Sbjct: 31 KTKKTAKTTSTKAAKKAAKVKKTKSVKTTTKKVTVKFEKTESVKKESVAKKTVKKE 86
Score = 40.3 bits (94), Expect = 0.007
Identities = 19/56 (33%), Positives = 23/56 (41%)
Query: 1582 KKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSRE 1637
KK K+ K KK K K K K KK K K KK K +K + +E
Sbjct: 21 KKATTSKETAKTKKTAKTTSTKAAKKAAKVKKTKSVKTTTKKVTVKFEKTESVKKE 76
Score = 39.5 bits (92), Expect = 0.010
Identities = 18/52 (34%), Positives = 23/52 (44%)
Query: 1582 KKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
K KK K KK K K KK K +K + KK+ KK KK+ +
Sbjct: 40 STKAAKKAAKVKKTKSVKTTTKKVTVKFEKTESVKKESVAKKTVKKEAVSAE 91
Score = 39.5 bits (92), Expect = 0.012
Identities = 21/68 (30%), Positives = 26/68 (38%)
Query: 1583 KKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGGGG 1642
K KK K K KK K KK K K KK K +K + KK+ KK ++
Sbjct: 31 KTKKTAKTTSTKAAKKAAKVKKTKSVKTTTKKVTVKFEKTESVKKESVAKKTVKKEAVSA 90
Query: 1643 EKELVQKN 1650
E
Sbjct: 91 EVFEASNK 98
Score = 39.2 bits (91), Expect = 0.012
Identities = 18/51 (35%), Positives = 24/51 (47%)
Query: 1582 KKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKK 1632
K KK K KK K K KK K++K + KK+ KK KK+ +
Sbjct: 42 KAAKKAAKVKKTKSVKTTTKKVTVKFEKTESVKKESVAKKTVKKEAVSAEV 92
Score = 38.8 bits (90), Expect = 0.020
Identities = 20/53 (37%), Positives = 23/53 (43%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
KK K K KK K KK K K KK K +K + KK+ KK K
Sbjct: 32 TKKTAKTTSTKAAKKAAKVKKTKSVKTTTKKVTVKFEKTESVKKESVAKKTVK 84
Score = 38.8 bits (90), Expect = 0.020
Identities = 16/53 (30%), Positives = 23/53 (43%)
Query: 1583 KKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYS 1635
K KK K K KK K +K + KK+ KK KK+ + + K +
Sbjct: 49 KVKKTKSVKTTTKKVTVKFEKTESVKKESVAKKTVKKEAVSAEVFEASNKLFK 101
Score = 38.4 bits (89), Expect = 0.025
Identities = 19/55 (34%), Positives = 23/55 (41%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYS 1635
E K KK K K KK K KK K KK K +K + KK+ K +
Sbjct: 28 ETAKTKKTAKTTSTKAAKKAAKVKKTKSVKTTTKKVTVKFEKTESVKKESVAKKT 82
Score = 38.4 bits (89), Expect = 0.026
Identities = 18/54 (33%), Positives = 23/54 (42%)
Query: 1582 KKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYS 1635
KK K KK K K KK K K + KK+ KK KK+ + + S
Sbjct: 43 AAKKAAKVKKTKSVKTTTKKVTVKFEKTESVKKESVAKKTVKKEAVSAEVFEAS 96
Score = 38.0 bits (88), Expect = 0.034
Identities = 17/53 (32%), Positives = 22/53 (41%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
K KK K KK K K KK +K + KK+ KK KK+ +
Sbjct: 40 STKAAKKAAKVKKTKSVKTTTKKVTVKFEKTESVKKESVAKKTVKKEAVSAEV 92
Score = 37.6 bits (87), Expect = 0.041
Identities = 16/53 (30%), Positives = 22/53 (41%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
+K K KK K K KK K +K KK+ KK KK+ + +
Sbjct: 45 KKAAKVKKTKSVKTTTKKVTVKFEKTESVKKESVAKKTVKKEAVSAEVFEASN 97
Score = 37.6 bits (87), Expect = 0.044
Identities = 20/68 (29%), Positives = 25/68 (36%)
Query: 1583 KKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGGGG 1642
K KK K KK K K KK K +K + KK+ KK KK+ E
Sbjct: 40 STKAAKKAAKVKKTKSVKTTTKKVTVKFEKTESVKKESVAKKTVKKEAVSAEVFEASNKL 99
Query: 1643 EKELVQKN 1650
K +
Sbjct: 100 FKNTSKLP 107
Score = 37.2 bits (86), Expect = 0.060
Identities = 15/51 (29%), Positives = 21/51 (41%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKK 1631
K KK K K KK K +K + K+ KK KK+ + + K
Sbjct: 48 AKVKKTKSVKTTTKKVTVKFEKTESVKKESVAKKTVKKEAVSAEVFEASNK 98
Score = 35.7 bits (82), Expect = 0.17
Identities = 17/55 (30%), Positives = 23/55 (41%)
Query: 1582 KKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSR 1636
KK K K KK K +K + KK KK KK+ + + K K S+
Sbjct: 51 KKTKSVKTTTKKVTVKFEKTESVKKESVAKKTVKKEAVSAEVFEASNKLFKNTSK 105
Score = 34.9 bits (80), Expect = 0.30
Identities = 15/56 (26%), Positives = 23/56 (41%)
Query: 1582 KKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSRE 1637
KK K K KK K +K + K + KK KK+ + + K K + +
Sbjct: 50 VKKTKSVKTTTKKVTVKFEKTESVKKESVAKKTVKKEAVSAEVFEASNKLFKNTSK 105
Score = 34.2 bits (78), Expect = 0.59
Identities = 14/50 (28%), Positives = 21/50 (42%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKK 1630
+ K K KK K +K + KK+ KK KK+ + + K K
Sbjct: 52 KTKSVKTTTKKVTVKFEKTESVKKESVAKKTVKKEAVSAEVFEASNKLFK 101
Score = 31.5 bits (71), Expect = 3.5
Identities = 14/50 (28%), Positives = 20/50 (40%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKK 1630
K KK K +K + KK+ KK KK+ + + K K K
Sbjct: 56 VKTTTKKVTVKFEKTESVKKESVAKKTVKKEAVSAEVFEASNKLFKNTSK 105
>gnl|CDD|220252 pfam09468, RNase_H2-Ydr279, Ydr279p protein family (RNase H2 complex
component). RNases H are enzymes that specifically
hydrolyse RNA when annealed to a complementary DNA and
are present in all living organisms. In yeast RNase H2 is
composed of a complex of three proteins (Rnh2Ap, Ydr279p
and Ylr154p), this family represents the homologues of
Ydr279p. It is not known whether non yeast proteins in
this family fulfil the same function.
Length = 287
Score = 46.2 bits (110), Expect = 7e-05
Identities = 20/54 (37%), Positives = 31/54 (57%)
Query: 1580 GEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
KKKK++ ++ + + + +KK+K K + KKKK K+ K K KK K KK
Sbjct: 229 ESKKKKRETEEDVEAAESRAEKKRKSKEEIKKKKPKESKGVKALKKVVAKGMKK 282
Score = 45.4 bits (108), Expect = 1e-04
Identities = 18/69 (26%), Positives = 29/69 (42%)
Query: 1555 ASKSYPSLKPLGSYIVDLLARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKK 1614
+ +RE + + + + +KK+K K++ KKKK K+ K K K
Sbjct: 214 SLLIPEFKPLDKYLKESKKKKRETEEDVEAAESRAEKKRKSKEEIKKKKPKESKGVKALK 273
Query: 1615 KKKKKKKKK 1623
K K KK
Sbjct: 274 KVVAKGMKK 282
Score = 43.5 bits (103), Expect = 6e-04
Identities = 19/51 (37%), Positives = 31/51 (60%)
Query: 1583 KKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
K K+ KKKK++ ++ + + + KK+K K++ KKKK K+ K K KK
Sbjct: 225 KYLKESKKKKRETEEDVEAAESRAEKKRKSKEEIKKKKPKESKGVKALKKV 275
Score = 43.5 bits (103), Expect = 6e-04
Identities = 19/53 (35%), Positives = 31/53 (58%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
K+ KKKK++ ++ + + + +KK K K++ KKKK K+ K K KK K
Sbjct: 226 YLKESKKKKRETEEDVEAAESRAEKKRKSKEEIKKKKPKESKGVKALKKVVAK 278
Score = 42.3 bits (100), Expect = 0.001
Identities = 18/52 (34%), Positives = 32/52 (61%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKK 1632
+K K+ KKKK++ ++ + + + + K+K K++ KKKK K+ K K KK
Sbjct: 224 DKYLKESKKKKRETEEDVEAAESRAEKKRKSKEEIKKKKPKESKGVKALKKV 275
Score = 42.3 bits (100), Expect = 0.001
Identities = 18/52 (34%), Positives = 30/52 (57%)
Query: 1582 KKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
K K+ KKKK++ ++ + + +KK+K K++ KKKK K+ K K K
Sbjct: 222 PLDKYLKESKKKKRETEEDVEAAESRAEKKRKSKEEIKKKKPKESKGVKALK 273
Score = 41.9 bits (99), Expect = 0.002
Identities = 18/53 (33%), Positives = 32/53 (60%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
++ KKKK++ ++ + + + +KK+K K++ KKKK K+ K K KK K
Sbjct: 228 KESKKKKRETEEDVEAAESRAEKKRKSKEEIKKKKPKESKGVKALKKVVAKGM 280
Score = 40.0 bits (94), Expect = 0.008
Identities = 19/53 (35%), Positives = 31/53 (58%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
E K K K+ KKKK++ ++ + + +KK+K K++ KKKK K+ K K
Sbjct: 219 EFKPLDKYLKESKKKKRETEEDVEAAESRAEKKRKSKEEIKKKKPKESKGVKA 271
Score = 38.9 bits (91), Expect = 0.018
Identities = 18/53 (33%), Positives = 31/53 (58%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
K K K+ KKKK++ ++ + + + +KK+K K++ KKKK K+ K K
Sbjct: 220 FKPLDKYLKESKKKKRETEEDVEAAESRAEKKRKSKEEIKKKKPKESKGVKAL 272
Score = 38.5 bits (90), Expect = 0.021
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
Query: 1582 KKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGGG 1641
K + K K K+ KKKK++ + + + + +KK+K K++ KKKK K S+
Sbjct: 213 KSLLIPEFKPLDKYLKESKKKKRETEEDVEAAESRAEKKRKSKEEIKKKKPKESK----- 267
Query: 1642 GEKELVQKN 1650
G K L +
Sbjct: 268 GVKALKKVV 276
>gnl|CDD|148820 pfam07432, Hc1, Histone H1-like protein Hc1. This family consists of
several bacterial histone H1-like Hc1 proteins. In
Chlamydia, Hc1 is expressed in the late stages of the
life cycle, concomitant with the reorganisation of
chlamydial reticulate bodies into elementary bodies. This
suggests that Hc1 protein plays a role in the
condensation of chromatin during intracellular
differentiation.
Length = 123
Score = 43.6 bits (102), Expect = 8e-05
Identities = 25/63 (39%), Positives = 28/63 (44%)
Query: 1574 ARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
A + G +KK KK K K KK K KK KK K K K KK KK KK
Sbjct: 55 AEKSGLMKKKPAKKAPKAAKAPKKAAKAPAKKAAAAPAKKAKAVKAKPATKKTAAKKVKK 114
Query: 1634 YSR 1636
S+
Sbjct: 115 MSK 117
Score = 40.9 bits (95), Expect = 8e-04
Identities = 24/65 (36%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
Query: 1573 LARREG-RGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKK 1631
L R+E + EK KKK KK K K KK K KK KK K K K KK
Sbjct: 47 LYRKESIKAEKSGLMKKKPAKKAPKAAKAPKKAAKAPAKKAAAAPAKKAKAVKAKPATKK 106
Query: 1632 KKYSR 1636
+
Sbjct: 107 TAAKK 111
Score = 34.7 bits (79), Expect = 0.096
Identities = 19/53 (35%), Positives = 22/53 (41%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
EK K +K+ K +K KKK K K K KK K KK KK
Sbjct: 42 EKIAKLYRKESIKAEKSGLMKKKPAKKAPKAAKAPKKAAKAPAKKAAAAPAKK 94
Score = 34.0 bits (77), Expect = 0.18
Identities = 18/51 (35%), Positives = 21/51 (41%)
Query: 1582 KKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKK 1632
K +K+ K +K KKK KK K KK K KK KK K
Sbjct: 46 KLYRKESIKAEKSGLMKKKPAKKAPKAAKAPKKAAKAPAKKAAAAPAKKAK 96
Score = 33.6 bits (76), Expect = 0.23
Identities = 19/51 (37%), Positives = 22/51 (43%)
Query: 1583 KKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
K +K+ K +K KKK KK K K KK K KK KK K
Sbjct: 46 KLYRKESIKAEKSGLMKKKPAKKAPKAAKAPKKAAKAPAKKAAAAPAKKAK 96
Score = 32.4 bits (73), Expect = 0.53
Identities = 18/51 (35%), Positives = 22/51 (43%)
Query: 1582 KKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKK 1632
K +K K +K+ K +K KKK KK K K KK K KK
Sbjct: 40 KLEKIAKLYRKESIKAEKSGLMKKKPAKKAPKAAKAPKKAAKAPAKKAAAA 90
Score = 32.4 bits (73), Expect = 0.58
Identities = 17/55 (30%), Positives = 23/55 (41%)
Query: 1582 KKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSR 1636
+K K +K+ K +K KKK K K K KK K KK K ++
Sbjct: 42 EKIAKLYRKESIKAEKSGLMKKKPAKKAPKAAKAPKKAAKAPAKKAAAAPAKKAK 96
Score = 30.5 bits (68), Expect = 2.8
Identities = 18/47 (38%), Positives = 22/47 (46%)
Query: 1587 KKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
K +K K +K+ K +K KKK KK K K KK K KK
Sbjct: 40 KLEKIAKLYRKESIKAEKSGLMKKKPAKKAPKAAKAPKKAAKAPAKK 86
Score = 30.1 bits (67), Expect = 4.3
Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Query: 1562 LKPLGSYIVDLLARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKK 1621
++ L I L + E +G K ++ + K +K K +K+ K +K KKK K
Sbjct: 9 MRDLLESIQSDLEKAE-KGNKAAAQRVRTDSIKLEKIAKLYRKESIKAEKSGLMKKKPAK 67
Query: 1622 KKKKKKKKKKKK 1633
K K K KK
Sbjct: 68 KAPKAAKAPKKA 79
Score = 29.3 bits (65), Expect = 6.2
Identities = 17/48 (35%), Positives = 22/48 (45%)
Query: 1588 KKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYS 1635
K +K K +K+ K +K KKK KK K K KK K K +
Sbjct: 40 KLEKIAKLYRKESIKAEKSGLMKKKPAKKAPKAAKAPKKAAKAPAKKA 87
>gnl|CDD|214661 smart00435, TOPEUc, DNA Topoisomerase I (eukaryota). DNA
Topoisomerase I (eukaryota), DNA topoisomerase V, Vaccina
virus topoisomerase, Variola virus topoisomerase, Shope
fibroma virus topoisomeras.
Length = 391
Score = 46.6 bits (111), Expect = 8e-05
Identities = 20/61 (32%), Positives = 34/61 (55%)
Query: 1576 REGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYS 1635
+ + + K+ KK + K+K K K + +K + K+KKK+KKK++KKKK+
Sbjct: 287 KALKYQLKRLKKMILLFEMISDLKRKLKSKFERDNEKLDAEVKEKKKEKKKEEKKKKQIE 346
Query: 1636 R 1636
R
Sbjct: 347 R 347
Score = 42.7 bits (101), Expect = 0.001
Identities = 20/70 (28%), Positives = 40/70 (57%)
Query: 1562 LKPLGSYIVDLLARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKK 1621
LK L I+ + + + K K ++ +K + K+KKK+KKK +KKKK+ ++ +++
Sbjct: 293 LKRLKKMILLFEMISDLKRKLKSKFERDNEKLDAEVKEKKKEKKKEEKKKKQIERLEERI 352
Query: 1622 KKKKKKKKKK 1631
+K + + K
Sbjct: 353 EKLEVQATDK 362
Score = 41.2 bits (97), Expect = 0.004
Identities = 17/57 (29%), Positives = 35/57 (61%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSRE 1637
+ K+K K K ++ +K + K+KKK+KKK++KKKK+ ++ +++ +K +
Sbjct: 302 LFEMISDLKRKLKSKFERDNEKLDAEVKEKKKEKKKEEKKKKQIERLEERIEKLEVQ 358
Score = 41.2 bits (97), Expect = 0.004
Identities = 17/63 (26%), Positives = 36/63 (57%)
Query: 1570 VDLLARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKK 1629
+L K+K K K ++ +K + K+KKK+ KK++KKKK+ ++ +++ +K +
Sbjct: 298 KMILLFEMISDLKRKLKSKFERDNEKLDAEVKEKKKEKKKEEKKKKQIERLEERIEKLEV 357
Query: 1630 KKK 1632
+
Sbjct: 358 QAT 360
Score = 40.8 bits (96), Expect = 0.005
Identities = 18/62 (29%), Positives = 37/62 (59%)
Query: 1572 LLARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKK 1631
LL ++K K K ++ +K + K+KKK+K K++KKKK+ ++ +++ +K + +
Sbjct: 301 LLFEMISDLKRKLKSKFERDNEKLDAEVKEKKKEKKKEEKKKKQIERLEERIEKLEVQAT 360
Query: 1632 KK 1633
K
Sbjct: 361 DK 362
Score = 40.0 bits (94), Expect = 0.009
Identities = 17/59 (28%), Positives = 36/59 (61%)
Query: 1579 RGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSRE 1637
K+K K K ++ +K + K+KK +KKK++KKKK+ ++ +++ +K + + +E
Sbjct: 305 MISDLKRKLKSKFERDNEKLDAEVKEKKKEKKKEEKKKKQIERLEERIEKLEVQATDKE 363
Score = 36.9 bits (86), Expect = 0.081
Identities = 15/50 (30%), Positives = 32/50 (64%)
Query: 1579 RGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKK 1628
+K + K+KKK+KKK++KKKK+ ++ +++ +K + + K++ K
Sbjct: 317 FERDNEKLDAEVKEKKKEKKKEEKKKKQIERLEERIEKLEVQATDKEENK 366
Score = 33.9 bits (78), Expect = 0.66
Identities = 24/92 (26%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 1535 SKELEEINTSIMFGKIPQAWASKSYPSLKPLGSYIVDLLARREGRGEKKKKKKKKKKKKK 1594
K +E++ I Q K L + S + L + R +K + K+KKK+
Sbjct: 276 EKSMEKLQEKI-KALKYQLKRLKKMILLFEMISDLKRKLKSKFERDNEKLDAEVKEKKKE 334
Query: 1595 KKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKK 1626
KKK++KKKK+ + +++ +K + + K++ K
Sbjct: 335 KKKEEKKKKQIERLEERIEKLEVQATDKEENK 366
Score = 32.7 bits (75), Expect = 1.8
Identities = 16/62 (25%), Positives = 28/62 (45%)
Query: 1588 KKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGGGGEKELV 1647
K ++K K K + K+ KK + K+K K K ++ +K +E +KE
Sbjct: 281 KLQEKIKALKYQLKRLKKMILLFEMISDLKRKLKSKFERDNEKLDAEVKEKKKEKKKEEK 340
Query: 1648 QK 1649
+K
Sbjct: 341 KK 342
>gnl|CDD|215214 PLN02381, PLN02381, valyl-tRNA synthetase.
Length = 1066
Score = 46.8 bits (111), Expect = 1e-04
Identities = 19/51 (37%), Positives = 32/51 (62%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKK 1631
E+KKKK++K K+K+ KK K +K+ K K + ++ KK +KK +K+
Sbjct: 19 ERKKKKEEKAKEKELKKLKAAQKEAKAKLQAQQASDGTNVPKKSEKKSRKR 69
Score = 44.1 bits (104), Expect = 7e-04
Identities = 19/53 (35%), Positives = 33/53 (62%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
E ++KKKK++K K+K+ KK K +K+ K K + ++ KK +KK +K+
Sbjct: 17 ELERKKKKEEKAKEKELKKLKAAQKEAKAKLQAQQASDGTNVPKKSEKKSRKR 69
Score = 43.3 bits (102), Expect = 0.001
Identities = 18/56 (32%), Positives = 32/56 (57%)
Query: 1582 KKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSRE 1637
++KKKK++K K+K+ KK K +K+ K + ++ KK +KK +K+ E
Sbjct: 19 ERKKKKEEKAKEKELKKLKAAQKEAKAKLQAQQASDGTNVPKKSEKKSRKRDVEDE 74
Score = 42.6 bits (100), Expect = 0.002
Identities = 19/53 (35%), Positives = 32/53 (60%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
E+ ++KKKK++K K+K+ KK K +K K K + ++ KK +KK +K
Sbjct: 16 EELERKKKKEEKAKEKELKKLKAAQKEAKAKLQAQQASDGTNVPKKSEKKSRK 68
Score = 42.2 bits (99), Expect = 0.003
Identities = 18/61 (29%), Positives = 35/61 (57%)
Query: 1577 EGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSR 1636
E + +++ ++KKKK++K K+K+ KK K +K+ K K + ++ KK +KK +
Sbjct: 9 EKKILTEEELERKKKKEEKAKEKELKKLKAAQKEAKAKLQAQQASDGTNVPKKSEKKSRK 68
Query: 1637 E 1637
Sbjct: 69 R 69
Score = 41.4 bits (97), Expect = 0.005
Identities = 18/55 (32%), Positives = 32/55 (58%)
Query: 1583 KKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSRE 1637
++ ++KKKK++K K+K+ KK K K+ K K + ++ KK +KK R+
Sbjct: 16 EELERKKKKEEKAKEKELKKLKAAQKEAKAKLQAQQASDGTNVPKKSEKKSRKRD 70
Score = 34.5 bits (79), Expect = 0.65
Identities = 17/61 (27%), Positives = 34/61 (55%)
Query: 1590 KKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGGGGEKELVQK 1649
+ +KK +++ ++KK K++K K+K+ KK K +K+ K K + G K+ +K
Sbjct: 6 SEAEKKILTEEELERKKKKEEKAKEKELKKLKAAQKEAKAKLQAQQASDGTNVPKKSEKK 65
Query: 1650 N 1650
+
Sbjct: 66 S 66
Score = 32.9 bits (75), Expect = 1.7
Identities = 16/60 (26%), Positives = 33/60 (55%)
Query: 1586 KKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGGGGEKE 1645
+ +KK +++ ++KKKK++ K+K+ KK K +K+ K K + ++ EK+
Sbjct: 6 SEAEKKILTEEELERKKKKEEKAKEKELKKLKAAQKEAKAKLQAQQASDGTNVPKKSEKK 65
>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA;
Provisional.
Length = 387
Score = 46.0 bits (109), Expect = 1e-04
Identities = 15/59 (25%), Positives = 24/59 (40%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGG 1639
KKK + + KKK + KKK + K K + K +K K +K ++
Sbjct: 199 AKKKAEAEAKKKAAAEAKKKAAAEAKAAAAKAAAEAKAAAEKAAAAKAAEKAAAAKAAA 257
Score = 46.0 bits (109), Expect = 1e-04
Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 3/63 (4%)
Query: 1574 ARREGRGEKKKKKK---KKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKK 1630
A+++ E K KKK + + KKK + KKK + K K + K +K
Sbjct: 183 AKKKAEAEAAAKAAAEAKKKAEAEAKKKAAAEAKKKAAAEAKAAAAKAAAEAKAAAEKAA 242
Query: 1631 KKK 1633
K
Sbjct: 243 AAK 245
Score = 45.6 bits (108), Expect = 2e-04
Identities = 15/60 (25%), Positives = 24/60 (40%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGG 1640
E KKK + + KKK + KKK + K + K +K K +K + +
Sbjct: 198 EAKKKAEAEAKKKAAAEAKKKAAAEAKAAAAKAAAEAKAAAEKAAAAKAAEKAAAAKAAA 257
Score = 45.2 bits (107), Expect = 2e-04
Identities = 15/59 (25%), Positives = 23/59 (38%)
Query: 1574 ARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKK 1632
A + + E + KKK + KKK + K K + K +K K +K K
Sbjct: 197 AEAKKKAEAEAKKKAAAEAKKKAAAEAKAAAAKAAAEAKAAAEKAAAAKAAEKAAAAKA 255
Score = 42.5 bits (100), Expect = 0.002
Identities = 21/69 (30%), Positives = 32/69 (46%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGG 1640
E KKK + + KK + KKK + + K + KKK + + KKK + KKK + E
Sbjct: 166 EAKKKAEAEAAKKAAAEAKKKAEAEAAAKAAAEAKKKAEAEAKKKAAAEAKKKAAAEAKA 225
Query: 1641 GGEKELVQK 1649
K +
Sbjct: 226 AAAKAAAEA 234
Score = 40.2 bits (94), Expect = 0.008
Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 3/79 (3%)
Query: 1574 ARREGRGEKKKKKKKKKKKK---KKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKK 1630
A+++ E KK + KKK + K + KKK + + KKK + KKK + K
Sbjct: 167 AKKKAEAEAAKKAAAEAKKKAEAEAAAKAAAEAKKKAEAEAKKKAAAEAKKKAAAEAKAA 226
Query: 1631 KKKYSREGGGGGEKELVQK 1649
K + E EK K
Sbjct: 227 AAKAAAEAKAAAEKAAAAK 245
Score = 37.9 bits (88), Expect = 0.047
Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 4/80 (5%)
Query: 1574 ARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKY----KKKKKKKKKKKKKKKKKKKKKK 1629
A ++ ++K+ ++ K K K + + K+ KK + KKK + + KK +
Sbjct: 123 AAKQAALKQKQAEEAAAKAAAAAKAKAEAEAKRAAAAAKKAAAEAKKKAEAEAAKKAAAE 182
Query: 1630 KKKKYSREGGGGGEKELVQK 1649
KKK E E +K
Sbjct: 183 AKKKAEAEAAAKAAAEAKKK 202
Score = 36.3 bits (84), Expect = 0.11
Identities = 11/50 (22%), Positives = 18/50 (36%)
Query: 1573 LARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKK 1622
A+++ E KKK + K K + K + K +K K
Sbjct: 206 EAKKKAAAEAKKKAAAEAKAAAAKAAAEAKAAAEKAAAAKAAEKAAAAKA 255
Score = 36.3 bits (84), Expect = 0.14
Identities = 21/85 (24%), Positives = 34/85 (40%), Gaps = 11/85 (12%)
Query: 1576 REGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKK-----------KKKKKKKKKK 1624
R E+KK+ ++ K+ K+K+ ++ K K K KK + KK
Sbjct: 110 RLAAQEQKKQAEEAAKQAALKQKQAEEAAAKAAAAAKAKAEAEAKRAAAAAKKAAAEAKK 169
Query: 1625 KKKKKKKKKYSREGGGGGEKELVQK 1649
K + + KK + E E E K
Sbjct: 170 KAEAEAAKKAAAEAKKKAEAEAAAK 194
Score = 35.9 bits (83), Expect = 0.18
Identities = 18/60 (30%), Positives = 28/60 (46%)
Query: 1574 ARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
A+R KK + KKK + + KK + KK + + K + KKK + + KKK
Sbjct: 153 AKRAAAAAKKAAAEAKKKAEAEAAKKAAAEAKKKAEAEAAAKAAAEAKKKAEAEAKKKAA 212
Score = 35.6 bits (82), Expect = 0.20
Identities = 17/57 (29%), Positives = 27/57 (47%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSRE 1637
KK + KKK + + KK + KK + + K + KKK + + KKK + E
Sbjct: 158 AAAKKAAAEAKKKAEAEAAKKAAAEAKKKAEAEAAAKAAAEAKKKAEAEAKKKAAAE 214
Score = 35.2 bits (81), Expect = 0.26
Identities = 15/60 (25%), Positives = 29/60 (48%)
Query: 1573 LARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKK 1632
LA +E + + ++ K+ K+K+ ++ K K K + + K+ KK + KKK
Sbjct: 111 LAAQEQKKQAEEAAKQAALKQKQAEEAAAKAAAAAKAKAEAEAKRAAAAAKKAAAEAKKK 170
Score = 32.9 bits (75), Expect = 1.5
Identities = 12/54 (22%), Positives = 28/54 (51%)
Query: 1576 REGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKK 1629
R + EK++ +++KK+ ++ K+ K+K ++ K K K + + K+
Sbjct: 102 RLKQLEKERLAAQEQKKQAEEAAKQAALKQKQAEEAAAKAAAAAKAKAEAEAKR 155
Score = 32.9 bits (75), Expect = 1.6
Identities = 11/56 (19%), Positives = 40/56 (71%)
Query: 1578 GRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
R ++++K K+ ++++KKK++++ ++ + K+ ++++ K+ +K++ +++KK+
Sbjct: 65 NRQQQQQKSAKRAEEQRKKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQA 120
Score = 32.9 bits (75), Expect = 1.6
Identities = 11/48 (22%), Positives = 27/48 (56%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKK 1628
E+ K+ +K++ +++KK+ ++ K+ K+K+ ++ K K K
Sbjct: 101 ERLKQLEKERLAAQEQKKQAEEAAKQAALKQKQAEEAAAKAAAAAKAK 148
Score = 32.1 bits (73), Expect = 2.3
Identities = 11/52 (21%), Positives = 29/52 (55%)
Query: 1582 KKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
K+ +K++ +++KK+ ++ K+ K+K+ ++ K K K + + K+
Sbjct: 104 KQLEKERLAAQEQKKQAEEAAKQAALKQKQAEEAAAKAAAAAKAKAEAEAKR 155
Score = 32.1 bits (73), Expect = 2.9
Identities = 14/61 (22%), Positives = 42/61 (68%), Gaps = 2/61 (3%)
Query: 1579 RGEKKKKKKKKKK--KKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSR 1636
R E+++KKK++++ + ++K+ ++++ K+ +K++ +++KK+ ++ K+ K+K +
Sbjct: 76 RAEEQRKKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAALKQKQAE 135
Query: 1637 E 1637
E
Sbjct: 136 E 136
Score = 31.7 bits (72), Expect = 3.6
Identities = 13/60 (21%), Positives = 28/60 (46%)
Query: 1573 LARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKK 1632
L + E +++KK+ ++ K+ K+K+ ++ K K K + + K+ KK
Sbjct: 103 LKQLEKERLAAQEQKKQAEEAAKQAALKQKQAEEAAAKAAAAAKAKAEAEAKRAAAAAKK 162
Score = 30.9 bits (70), Expect = 6.2
Identities = 15/73 (20%), Positives = 49/73 (67%)
Query: 1565 LGSYIVDLLARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKK 1624
+ + +VD A E +++++K K+ ++++KKK++++ ++ ++K+ ++++ K+ +K+
Sbjct: 50 IDAVMVDPGAVVEQYNRQQQQQKSAKRAEEQRKKKEQQQAEELQQKQAAEQERLKQLEKE 109
Query: 1625 KKKKKKKKKYSRE 1637
+ +++KK + E
Sbjct: 110 RLAAQEQKKQAEE 122
Score = 30.9 bits (70), Expect = 6.3
Identities = 10/56 (17%), Positives = 32/56 (57%)
Query: 1576 REGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKK 1631
++ + ++++ K+ +K++ +++KK+ ++ K+ K+K+ ++ K K K
Sbjct: 93 QQKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAALKQKQAEEAAAKAAAAAKAK 148
Score = 30.9 bits (70), Expect = 6.3
Identities = 10/51 (19%), Positives = 28/51 (54%)
Query: 1583 KKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
++++ K+ +K++ +++KK+ + K+ K+K+ ++ K K K
Sbjct: 98 AEQERLKQLEKERLAAQEQKKQAEEAAKQAALKQKQAEEAAAKAAAAAKAK 148
Score = 30.9 bits (70), Expect = 6.6
Identities = 10/52 (19%), Positives = 29/52 (55%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKK 1632
++++ K+ +K++ +++KK+ ++ K+ K+K+ ++ K K K
Sbjct: 97 AAEQERLKQLEKERLAAQEQKKQAEEAAKQAALKQKQAEEAAAKAAAAAKAK 148
Score = 30.9 bits (70), Expect = 6.7
Identities = 10/53 (18%), Positives = 31/53 (58%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
+K+ ++++ K+ +K++ +++KK+ ++ K+ K+K+ ++ K K
Sbjct: 94 QKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAALKQKQAEEAAAKAAAAAK 146
Score = 30.5 bits (69), Expect = 8.3
Identities = 10/58 (17%), Positives = 31/58 (53%)
Query: 1576 REGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
E + ++ ++++ K+ +K++ +++KK+ + K+ K+K+ ++ K K
Sbjct: 90 EELQQKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAALKQKQAEEAAAKAAAAAKA 147
Score = 30.2 bits (68), Expect = 9.3
Identities = 14/62 (22%), Positives = 27/62 (43%), Gaps = 9/62 (14%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKK---------KKKKKKKKK 1631
E+ +++KK+ ++ K+ K+K+ + K K K + KK + K
Sbjct: 109 ERLAAQEQKKQAEEAAKQAALKQKQAEEAAAKAAAAAKAKAEAEAKRAAAAAKKAAAEAK 168
Query: 1632 KK 1633
KK
Sbjct: 169 KK 170
Score = 30.2 bits (68), Expect = 9.3
Identities = 10/57 (17%), Positives = 34/57 (59%)
Query: 1577 EGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
+ + E+ ++K+ ++++ K+ +K++ ++ KK+ ++ K+ K+K+ ++ K
Sbjct: 86 QQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAALKQKQAEEAAAKAA 142
>gnl|CDD|219572 pfam07780, Spb1_C, Spb1 C-terminal domain. This presumed domain is
found at the C-terminus of a family of FtsJ-like
methyltransferases. Members of this family are involved
in 60S ribosomal biogenesis.
Length = 212
Score = 45.0 bits (107), Expect = 1e-04
Identities = 29/78 (37%), Positives = 38/78 (48%), Gaps = 14/78 (17%)
Query: 1570 VDLLARREGRGEKKKKKKKKKKKKKKKKKKKKKKK-----KKYKKKKKKKKKKKKK---- 1620
+ +A E E++K K+ KK KK KKKKKK+KK KK K K + K K
Sbjct: 135 AEAIAEDEDISEREKAKQIKKLYKKAKKKKKKRKKTYVVAKKGNKGKAGRPKGVKGKYKV 194
Query: 1621 -----KKKKKKKKKKKKK 1633
KK + K+K KK
Sbjct: 195 VDPRMKKDLRALKRKAKK 212
Score = 40.7 bits (96), Expect = 0.003
Identities = 28/76 (36%), Positives = 34/76 (44%), Gaps = 20/76 (26%)
Query: 1574 ARREGRGEKKKKKKKKK--------------------KKKKKKKKKKKKKKKKYKKKKKK 1613
AR++ R K+ +K KKK K KK KKKKKK+KK Y KK
Sbjct: 118 ARKKMRALKRLEKAKKKAEAIAEDEDISEREKAKQIKKLYKKAKKKKKKRKKTYVVAKKG 177
Query: 1614 KKKKKKKKKKKKKKKK 1629
K K + K K K K
Sbjct: 178 NKGKAGRPKGVKGKYK 193
Score = 40.4 bits (95), Expect = 0.003
Identities = 31/86 (36%), Positives = 42/86 (48%), Gaps = 14/86 (16%)
Query: 1576 REGRGEKKKKKKKKKKKKKKK------------KKKKKKKKKKYKKKKKKKKKKKKKKKK 1623
E + KK + K+ +K KKK ++K K+ KK YKK KKK KKK+KK
Sbjct: 114 AEAKARKKMRALKRLEKAKKKAEAIAEDEDISEREKAKQIKKLYKKAKKK--KKKRKKTY 171
Query: 1624 KKKKKKKKKKYSREGGGGGEKELVQK 1649
KK K K R G G+ ++V
Sbjct: 172 VVAKKGNKGKAGRPKGVKGKYKVVDP 197
Score = 34.2 bits (79), Expect = 0.39
Identities = 27/86 (31%), Positives = 39/86 (45%), Gaps = 22/86 (25%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKK--------------------KKK 1620
K+K K+ + KK + K +KK + K+ +K KKK K
Sbjct: 98 YKEKLKEINARPIKKVAEAKARKKMRALKRLEKAKKKAEAIAEDEDISEREKAKQIKKLY 157
Query: 1621 KKKKKKKKKKKKKY--SREGGGGGEK 1644
KK KKKKKK+KK Y +++G G
Sbjct: 158 KKAKKKKKKRKKTYVVAKKGNKGKAG 183
>gnl|CDD|219868 pfam08496, Peptidase_S49_N, Peptidase family S49 N-terminal. This
domain is found to the N-terminus of bacterial signal
peptidases of the S49 family (pfam01343).
Length = 154
Score = 43.7 bits (104), Expect = 1e-04
Identities = 15/33 (45%), Positives = 23/33 (69%)
Query: 1601 KKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
KK+ K ++K +KK +K K K +KKK KK++ K
Sbjct: 65 KKELKAWEKAEKKAEKAKAKAEKKKAKKEEPKP 97
Score = 43.7 bits (104), Expect = 1e-04
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 1571 DLLARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKK 1612
L A + E K +K +KK +K K K +KKK KK + K +
Sbjct: 57 SLEAALLDKKELKAWEKAEKKAEKAKAKAEKKKAKKEEPKPR 98
Score = 42.1 bits (100), Expect = 4e-04
Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 1587 KKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKK 1620
KK+ K +K +KK +K K K +KKK KK++ K +
Sbjct: 65 KKELKAWEKAEKKAEKAKAKAEKKKAKKEEPKPR 98
Score = 42.1 bits (100), Expect = 4e-04
Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 1582 KKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKK 1615
KK+ K +K +KK +K K K +KKK KK++ K +
Sbjct: 65 KKELKAWEKAEKKAEKAKAKAEKKKAKKEEPKPR 98
Score = 42.1 bits (100), Expect = 4e-04
Identities = 15/34 (44%), Positives = 22/34 (64%)
Query: 1600 KKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
KK+ K K +KK +K K K +KKK KK++ K +
Sbjct: 65 KKELKAWEKAEKKAEKAKAKAEKKKAKKEEPKPR 98
Score = 41.7 bits (99), Expect = 6e-04
Identities = 18/51 (35%), Positives = 28/51 (54%)
Query: 1580 GEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKK 1630
E+ K K+ + KK+ K +K KK +K K K +KKK KK++ K +
Sbjct: 48 NEEYKDLKESLEAALLDKKELKAWEKAEKKAEKAKAKAEKKKAKKEEPKPR 98
Score = 41.0 bits (97), Expect = 0.001
Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 1598 KKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKK 1631
KK+ K +K +KK +K K K +KKK KK++ K +
Sbjct: 65 KKELKAWEKAEKKAEKAKAKAEKKKAKKEEPKPR 98
Score = 39.8 bits (94), Expect = 0.003
Identities = 14/36 (38%), Positives = 23/36 (63%)
Query: 1599 KKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKY 1634
KK+ K + +KK +K K K +KKK KK++ K + +
Sbjct: 65 KKELKAWEKAEKKAEKAKAKAEKKKAKKEEPKPRLF 100
Score = 35.6 bits (83), Expect = 0.064
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKY 1607
+KK +K K K +KKK KK++ K + +
Sbjct: 74 AEKKAEKAKAKAEKKKAKKEEPKPRLF 100
>gnl|CDD|224668 COG1754, COG1754, Uncharacterized C-terminal domain of topoisomerase
IA [General function prediction only].
Length = 298
Score = 45.5 bits (108), Expect = 1e-04
Identities = 20/47 (42%), Positives = 22/47 (46%)
Query: 1571 DLLARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKK 1617
+LLA R +G KK KK K KK KK K K KK KK
Sbjct: 250 ELLAERRAKGGPGKKPAKKATAAKAKKTTAKKAAAKKAAKTKKAAKK 296
Score = 40.5 bits (95), Expect = 0.005
Identities = 17/42 (40%), Positives = 19/42 (45%)
Query: 1591 KKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKK 1632
++ K KK KK K KK KK KK K KK KK
Sbjct: 255 RRAKGGPGKKPAKKATAAKAKKTTAKKAAAKKAAKTKKAAKK 296
Score = 40.5 bits (95), Expect = 0.006
Identities = 17/42 (40%), Positives = 19/42 (45%)
Query: 1592 KKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
++ K KK KK K KK KK KK K KK KK
Sbjct: 255 RRAKGGPGKKPAKKATAAKAKKTTAKKAAAKKAAKTKKAAKK 296
Score = 39.7 bits (93), Expect = 0.010
Identities = 17/43 (39%), Positives = 19/43 (44%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKK 1623
E++ K KK KK K KK K KK K KK KK
Sbjct: 254 ERRAKGGPGKKPAKKATAAKAKKTTAKKAAAKKAAKTKKAAKK 296
Score = 38.9 bits (91), Expect = 0.015
Identities = 17/42 (40%), Positives = 19/42 (45%)
Query: 1588 KKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKK 1629
++ K KK KK K KK KK KK K KK KK
Sbjct: 255 RRAKGGPGKKPAKKATAAKAKKTTAKKAAAKKAAKTKKAAKK 296
Score = 38.5 bits (90), Expect = 0.022
Identities = 17/42 (40%), Positives = 19/42 (45%)
Query: 1590 KKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKK 1631
++ K KK KK K KK KK KK K KK KK
Sbjct: 255 RRAKGGPGKKPAKKATAAKAKKTTAKKAAAKKAAKTKKAAKK 296
Score = 38.5 bits (90), Expect = 0.025
Identities = 16/42 (38%), Positives = 18/42 (42%)
Query: 1589 KKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKK 1630
++ K KK KK KK KK KK K KK KK
Sbjct: 255 RRAKGGPGKKPAKKATAAKAKKTTAKKAAAKKAAKTKKAAKK 296
Score = 35.8 bits (83), Expect = 0.14
Identities = 15/43 (34%), Positives = 20/43 (46%)
Query: 1596 KKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREG 1638
++ K KK KK K KK KK KK K KK +++
Sbjct: 255 RRAKGGPGKKPAKKATAAKAKKTTAKKAAAKKAAKTKKAAKKA 297
>gnl|CDD|219978 pfam08701, GN3L_Grn1, GNL3L/Grn1 putative GTPase. Grn1 (yeast) and
GNL3L (human) are putative GTPases which are required for
growth and play a role in processing of nucleolar
pre-rRNA. This family contains a potential nuclear
localisation signal.
Length = 80
Score = 41.5 bits (98), Expect = 1e-04
Identities = 21/77 (27%), Positives = 45/77 (58%), Gaps = 18/77 (23%)
Query: 1581 EKKKKKKKKKKKKKKKKKKK----KKKKKK---------YKKK-----KKKKKKKKKKKK 1622
K +KK + +K +K+ KK K KKKK +K++ ++KK+K++++K+
Sbjct: 4 YKIEKKVAEHHRKLRKEAKKNPTWKSKKKKDPGIPNSFPFKEEILEEIEEKKRKQEEEKE 63
Query: 1623 KKKKKKKKKKKYSREGG 1639
++K+ +K ++ +R+ G
Sbjct: 64 RRKEARKAERAEARKRG 80
Score = 40.3 bits (95), Expect = 4e-04
Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 20/71 (28%)
Query: 1583 KKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKK--------------------KKKKKKK 1622
+ + K +KK + +K +K+ KK K KKKK KK+K+++
Sbjct: 1 RLRYKIEKKVAEHHRKLRKEAKKNPTWKSKKKKDPGIPNSFPFKEEILEEIEEKKRKQEE 60
Query: 1623 KKKKKKKKKKK 1633
+K+++K+ +K
Sbjct: 61 EKERRKEARKA 71
Score = 30.3 bits (69), Expect = 1.3
Identities = 16/65 (24%), Positives = 38/65 (58%), Gaps = 9/65 (13%)
Query: 1575 RREGRGEKKKKKKKKKKKKK---------KKKKKKKKKKKKYKKKKKKKKKKKKKKKKKK 1625
R+ + KK K KKKK K++ ++ ++KK K++++K+++K+ +K ++
Sbjct: 15 RKLRKEAKKNPTWKSKKKKDPGIPNSFPFKEEILEEIEEKKRKQEEEKERRKEARKAERA 74
Query: 1626 KKKKK 1630
+ +K+
Sbjct: 75 EARKR 79
>gnl|CDD|217502 pfam03343, SART-1, SART-1 family. SART-1 is a protein involved in
cell cycle arrest and pre-mRNA splicing. It has been
shown to be a component of U4/U6 x U5 tri-snRNP complex
in human, Schizosaccharomyces pombe and Saccharomyces
cerevisiae. SART-1 is a known tumour antigen in a range
of cancers recognised by T cells.
Length = 603
Score = 46.3 bits (110), Expect = 1e-04
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 5/59 (8%)
Query: 1580 GEKKKKKKKKKKKKKKKKKKKKKKKKK-----YKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
E +KK+++ KKK K + Y + K KK KKKKKKKKK++K
Sbjct: 234 DEAEKKRQEVKKKLKINNVSLDDDSTETPASDYYDVSEMVKFKKPKKKKKKKKKRRKDL 292
Score = 38.6 bits (90), Expect = 0.030
Identities = 18/79 (22%), Positives = 35/79 (44%), Gaps = 15/79 (18%)
Query: 1574 ARREGRGEKKKKKKKKKKKKKKKKKKKKKKK---------------KKYKKKKKKKKKKK 1618
+ R E ++K K ++K+++ K K KK KK++KKK+ ++
Sbjct: 50 EAKRKREELREKIAKAREKRERNSKLGGIKTLGEDDDDDDDTKAWLKKSKKRQKKKEAER 109
Query: 1619 KKKKKKKKKKKKKKKYSRE 1637
KK +K+K++
Sbjct: 110 KKALLLDEKEKERAAEYTS 128
Score = 37.8 bits (88), Expect = 0.053
Identities = 23/101 (22%), Positives = 47/101 (46%), Gaps = 25/101 (24%)
Query: 1562 LKPL---GSYIVDLLARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKK-- 1616
LKPL G+ R+ + KK++++ + K+K+++ ++K K ++K+++ K
Sbjct: 17 LKPLPVPGAKPGSTKESRDAAAYENWKKRQEEAEAKRKREELREKIAKAREKRERNSKLG 76
Query: 1617 --------------------KKKKKKKKKKKKKKKKKYSRE 1637
K KK++KKK+ ++KK E
Sbjct: 77 GIKTLGEDDDDDDDTKAWLKKSKKRQKKKEAERKKALLLDE 117
Score = 37.4 bits (87), Expect = 0.077
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 10/62 (16%)
Query: 1582 KKKKKKKKKKKKKKKKKKKK----------KKKKKYKKKKKKKKKKKKKKKKKKKKKKKK 1631
K KK KKKKKKKKK++K +K +++ + + KK+K++
Sbjct: 273 VKFKKPKKKKKKKKKRRKDLDEDELEPEAEGLGSSDSGSRKDVEEENARLEDSPKKRKEE 332
Query: 1632 KK 1633
++
Sbjct: 333 QE 334
Score = 37.0 bits (86), Expect = 0.095
Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 12/69 (17%)
Query: 1581 EKKKKKKKKKKKKKKKKKKK------------KKKKKKYKKKKKKKKKKKKKKKKKKKKK 1628
K KK KKKKKKKKK++K +K +++ + + KK+K++
Sbjct: 273 VKFKKPKKKKKKKKKRRKDLDEDELEPEAEGLGSSDSGSRKDVEEENARLEDSPKKRKEE 332
Query: 1629 KKKKKYSRE 1637
++ + +
Sbjct: 333 QEDDDFVED 341
Score = 35.9 bits (83), Expect = 0.21
Identities = 24/80 (30%), Positives = 31/80 (38%), Gaps = 23/80 (28%)
Query: 1577 EGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKK---------------------- 1614
E G+KKK + +KK++ KKK K
Sbjct: 212 EIEGKKKKSDNLFTLDSGGSTDDEAEKKRQEVKKKLKINNVSLDDDSTETPASDYYDVSE 271
Query: 1615 -KKKKKKKKKKKKKKKKKKK 1633
K KK KKKKKKKKK++K
Sbjct: 272 MVKFKKPKKKKKKKKKRRKD 291
Score = 34.3 bits (79), Expect = 0.56
Identities = 18/61 (29%), Positives = 26/61 (42%)
Query: 1577 EGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSR 1636
G + + +KK+++ KKK K + + K KK KKKKKKK R
Sbjct: 229 GGSTDDEAEKKRQEVKKKLKINNVSLDDDSTETPASDYYDVSEMVKFKKPKKKKKKKKKR 288
Query: 1637 E 1637
Sbjct: 289 R 289
>gnl|CDD|219563 pfam07767, Nop53, Nop53 (60S ribosomal biogenesis). This nucleolar
family of proteins are involved in 60S ribosomal
biogenesis. They are specifically involved in the
processing beyond the 27S stage of 25S rRNA maturation.
This family contains sequences that bear similarity to
the glioma tumour suppressor candidate region gene 2
protein (p60). This protein has been found to interact
with herpes simplex type 1 regulatory proteins.
Length = 387
Score = 45.5 bits (108), Expect = 2e-04
Identities = 20/76 (26%), Positives = 40/76 (52%), Gaps = 15/76 (19%)
Query: 1577 EGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKK---------------KK 1621
E E K + K+K K ++ K+K++K+ ++ K++K+ KKK +K
Sbjct: 263 ESEYEPINKPVRPKRKTKAQRNKEKRRKELEREAKEEKQLKKKLAQLARLKEIAKEVAQK 322
Query: 1622 KKKKKKKKKKKKYSRE 1637
+K + +KK+++K E
Sbjct: 323 EKARARKKEQRKERGE 338
Score = 42.4 bits (100), Expect = 0.002
Identities = 20/73 (27%), Positives = 44/73 (60%), Gaps = 18/73 (24%)
Query: 1579 RGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKK------------------KKKKKKKKKK 1620
R ++K K ++ K+K++K+ +++ K++K+ KKK K + +KK+++
Sbjct: 274 RPKRKTKAQRNKEKRRKELEREAKEEKQLKKKLAQLARLKEIAKEVAQKEKARARKKEQR 333
Query: 1621 KKKKKKKKKKKKK 1633
K++ +KKK K++K
Sbjct: 334 KERGEKKKLKRRK 346
Score = 42.0 bits (99), Expect = 0.002
Identities = 20/71 (28%), Positives = 47/71 (66%), Gaps = 7/71 (9%)
Query: 1574 ARREGRGEKKKKKKKKKKKKKKKKKKKKKKK-------KKYKKKKKKKKKKKKKKKKKKK 1626
+R+ + ++ K+K++K+ +++ K++K+ KKK K+ K+ +K+K + +KK+++K
Sbjct: 275 PKRKTKAQRNKEKRRKELEREAKEEKQLKKKLAQLARLKEIAKEVAQKEKARARKKEQRK 334
Query: 1627 KKKKKKKYSRE 1637
++ +KKK R
Sbjct: 335 ERGEKKKLKRR 345
Score = 40.8 bits (96), Expect = 0.005
Identities = 12/52 (23%), Positives = 32/52 (61%)
Query: 1580 GEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKK 1631
++ + + + + K + K+K K ++ K+K++K+ +++ K++K+ KKK
Sbjct: 254 DDESAWEGFESEYEPINKPVRPKRKTKAQRNKEKRRKELEREAKEEKQLKKK 305
Score = 38.5 bits (90), Expect = 0.023
Identities = 12/53 (22%), Positives = 29/53 (54%)
Query: 1577 EGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKK 1629
+ + + + K + K+K K + K+K++K+ +++ K++K+ KKK
Sbjct: 253 SDDESAWEGFESEYEPINKPVRPKRKTKAQRNKEKRRKELEREAKEEKQLKKK 305
Score = 37.4 bits (87), Expect = 0.055
Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 17/82 (20%)
Query: 1568 YIVDLLARREGRGEKKKKKKKK-----------------KKKKKKKKKKKKKKKKKYKKK 1610
++VD +K++KK KK KK+ KKK KKKK K +
Sbjct: 43 FVVDTTGDEATIKKKRRKKLKKPLKSDEILENRSKVPAPSVKKRHVKKKSKKKKSKQVSR 102
Query: 1611 KKKKKKKKKKKKKKKKKKKKKK 1632
K+ + KK + KK K K
Sbjct: 103 KELLRLKKLARGKKGGKAKLLN 124
Score = 37.0 bits (86), Expect = 0.074
Identities = 14/51 (27%), Positives = 30/51 (58%)
Query: 1576 REGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKK 1626
E E + + + K + K+K K ++ K K++K+ +++ K++K+ KKK
Sbjct: 255 DESAWEGFESEYEPINKPVRPKRKTKAQRNKEKRRKELEREAKEEKQLKKK 305
Score = 37.0 bits (86), Expect = 0.087
Identities = 15/58 (25%), Positives = 36/58 (62%)
Query: 1580 GEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSRE 1637
G + + + K + K+K K ++ K+K +K+ +++ K++K+ KKK + + K+ ++E
Sbjct: 261 GFESEYEPINKPVRPKRKTKAQRNKEKRRKELEREAKEEKQLKKKLAQLARLKEIAKE 318
Score = 35.8 bits (83), Expect = 0.17
Identities = 18/45 (40%), Positives = 24/45 (53%)
Query: 1583 KKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKK 1627
KK+ KKK KKKK K+ +K+ + KK + KK K K K
Sbjct: 84 KKRHVKKKSKKKKSKQVSRKELLRLKKLARGKKGGKAKLLNASKD 128
Score = 35.5 bits (82), Expect = 0.26
Identities = 19/54 (35%), Positives = 27/54 (50%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKY 1634
+ + KKK++KK KK K + + + K KK+ KKK KKKK K
Sbjct: 46 DTTGDEATIKKKRRKKLKKPLKSDEILENRSKVPAPSVKKRHVKKKSKKKKSKQ 99
Score = 35.1 bits (81), Expect = 0.35
Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
Query: 1586 KKKKKKKKKKKKKKKKKKKKKYK-----KKKKKKKKKKKKKKKKKKKKKKKKKYSRE 1637
+ KKK++KK KK K + K KK+ KKK KKKK K+ SR+
Sbjct: 47 TTGDEATIKKKRRKKLKKPLKSDEILENRSKVPAPSVKKRHVKKKSKKKKSKQVSRK 103
Score = 33.9 bits (78), Expect = 0.75
Identities = 18/47 (38%), Positives = 23/47 (48%)
Query: 1582 KKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKK 1628
KK+ KKK KKKK K+ +K+ KK + KK K K K
Sbjct: 82 SVKKRHVKKKSKKKKSKQVSRKELLRLKKLARGKKGGKAKLLNASKD 128
Score = 33.9 bits (78), Expect = 0.82
Identities = 18/47 (38%), Positives = 24/47 (51%)
Query: 1584 KKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKK 1630
KK+ KKK KKKK K+ +K+ + KK + KK K K K
Sbjct: 82 SVKKRHVKKKSKKKKSKQVSRKELLRLKKLARGKKGGKAKLLNASKD 128
Score = 33.1 bits (76), Expect = 1.2
Identities = 18/49 (36%), Positives = 24/49 (48%)
Query: 1586 KKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKY 1634
KK+ KKK KKKK K+ + + + KK + KK K K K Y
Sbjct: 82 SVKKRHVKKKSKKKKSKQVSRKELLRLKKLARGKKGGKAKLLNASKDNY 130
Score = 31.2 bits (71), Expect = 5.6
Identities = 12/63 (19%), Positives = 34/63 (53%)
Query: 1571 DLLARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKK 1630
LL + GE++ + + + + + K + +K K ++ K+K++K+ +++ K++
Sbjct: 240 GLLEESDDDGEEESDDESAWEGFESEYEPINKPVRPKRKTKAQRNKEKRRKELEREAKEE 299
Query: 1631 KKK 1633
K+
Sbjct: 300 KQL 302
>gnl|CDD|219913 pfam08576, DUF1764, Eukaryotic protein of unknown function (DUF1764).
This is a family of eukaryotic proteins of unknown
function. This family contains many hypothetical
proteins.
Length = 98
Score = 41.7 bits (98), Expect = 2e-04
Identities = 18/50 (36%), Positives = 30/50 (60%)
Query: 1589 KKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREG 1638
KK+KKKKK+ K + K KK +KK KKK + + ++ K++ + +G
Sbjct: 19 SNIKKRKKKKKRTAKTARPKATKKGQKKDKKKDEFPEFPEESKRRRTEDG 68
Score = 40.1 bits (94), Expect = 7e-04
Identities = 21/55 (38%), Positives = 29/55 (52%)
Query: 1583 KKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSRE 1637
K++KK +K K+ KK+ KKKK+ K + K KK +KK KKK E
Sbjct: 1 KEEKKNEKTDKRDIDDIFSNIKKRKKKKKRTAKTARPKATKKGQKKDKKKDEFPE 55
Score = 40.1 bits (94), Expect = 8e-04
Identities = 21/60 (35%), Positives = 29/60 (48%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGG 1640
E+KK +K K+ KK+KKK K+ K + K KK +KK KKK + E
Sbjct: 2 EEKKNEKTDKRDIDDIFSNIKKRKKKKKRTAKTARPKATKKGQKKDKKKDEFPEFPEESK 61
Score = 38.6 bits (90), Expect = 0.002
Identities = 17/46 (36%), Positives = 28/46 (60%)
Query: 1587 KKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKK 1632
KK+KKKKK+ K + K KK +KK KKK + + ++ K+++
Sbjct: 19 SNIKKRKKKKKRTAKTARPKATKKGQKKDKKKDEFPEFPEESKRRR 64
Score = 38.6 bits (90), Expect = 0.003
Identities = 17/46 (36%), Positives = 27/46 (58%)
Query: 1582 KKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKK 1627
KK+KKKKK+ K + K KK KK KKK + + ++ K+++
Sbjct: 19 SNIKKRKKKKKRTAKTARPKATKKGQKKDKKKDEFPEFPEESKRRR 64
Score = 38.2 bits (89), Expect = 0.004
Identities = 16/47 (34%), Positives = 27/47 (57%)
Query: 1588 KKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKY 1634
KK+KKKKK+ K + KK +KK KKK + + ++ K+++
Sbjct: 19 SNIKKRKKKKKRTAKTARPKATKKGQKKDKKKDEFPEFPEESKRRRT 65
Score = 38.2 bits (89), Expect = 0.004
Identities = 17/46 (36%), Positives = 28/46 (60%)
Query: 1586 KKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKK 1631
KK+KKKKK+ K + K KK +KK KKK + + ++ K+++
Sbjct: 19 SNIKKRKKKKKRTAKTARPKATKKGQKKDKKKDEFPEFPEESKRRR 64
Score = 37.8 bits (88), Expect = 0.005
Identities = 17/46 (36%), Positives = 28/46 (60%)
Query: 1583 KKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKK 1628
KK+KKKKK+ K + K KK +KK KKK + + ++ K+++
Sbjct: 19 SNIKKRKKKKKRTAKTARPKATKKGQKKDKKKDEFPEFPEESKRRR 64
Score = 37.8 bits (88), Expect = 0.005
Identities = 16/46 (34%), Positives = 27/46 (58%)
Query: 1584 KKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKK 1629
KK+KKKKK+ K + K K +KK KKK + + ++ K+++
Sbjct: 19 SNIKKRKKKKKRTAKTARPKATKKGQKKDKKKDEFPEFPEESKRRR 64
Score = 37.4 bits (87), Expect = 0.007
Identities = 16/46 (34%), Positives = 27/46 (58%)
Query: 1580 GEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKK 1625
KK+KKKKK+ K + K KK +K KKK + + ++ K+++
Sbjct: 19 SNIKKRKKKKKRTAKTARPKATKKGQKKDKKKDEFPEFPEESKRRR 64
Score = 37.1 bits (86), Expect = 0.008
Identities = 19/60 (31%), Positives = 28/60 (46%)
Query: 1582 KKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGGG 1641
++KK +K K+ KK+KK KK+ K + K KK +KK KKK +
Sbjct: 2 EEKKNEKTDKRDIDDIFSNIKKRKKKKKRTAKTARPKATKKGQKKDKKKDEFPEFPEESK 61
Score = 36.3 bits (84), Expect = 0.018
Identities = 20/51 (39%), Positives = 28/51 (54%)
Query: 1582 KKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKK 1632
K++KK +K K+ KK+K KKK+ K + K KK +KK KKK
Sbjct: 1 KEEKKNEKTDKRDIDDIFSNIKKRKKKKKRTAKTARPKATKKGQKKDKKKD 51
Score = 34.4 bits (79), Expect = 0.086
Identities = 17/57 (29%), Positives = 30/57 (52%)
Query: 1563 KPLGSYIVDLLARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKK 1619
K I D+ + + R +KKK+ K + K KK +KK KKK + ++ K+++
Sbjct: 8 KTDKRDIDDIFSNIKKRKKKKKRTAKTARPKATKKGQKKDKKKDEFPEFPEESKRRR 64
Score = 33.6 bits (77), Expect = 0.16
Identities = 14/45 (31%), Positives = 26/45 (57%)
Query: 1578 GRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKK 1622
++KKKKK+ K + K KK +KK K K + + ++ K+++
Sbjct: 20 NIKKRKKKKKRTAKTARPKATKKGQKKDKKKDEFPEFPEESKRRR 64
>gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell
envelope biogenesis, outer membrane].
Length = 387
Score = 45.3 bits (107), Expect = 2e-04
Identities = 18/63 (28%), Positives = 29/63 (46%)
Query: 1574 ARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
A+++ E K +K K + + K K +KK + ++K +KKK K K K K
Sbjct: 192 AKKKAEAEAKAAAEKAKAEAEAKAKAEKKAEAAAEEKAAAEKKKAAAKAKADKAAAAAKA 251
Query: 1634 YSR 1636
R
Sbjct: 252 AER 254
Score = 44.9 bits (106), Expect = 3e-04
Identities = 19/60 (31%), Positives = 29/60 (48%)
Query: 1574 ARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
A+ E KKK + + K +K K + + K K KK + ++K +KKK K K K
Sbjct: 185 AKAEAAAAKKKAEAEAKAAAEKAKAEAEAKAKAEKKAEAAAEEKAAAEKKKAAAKAKADK 244
Score = 43.8 bits (103), Expect = 6e-04
Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Query: 1574 ARREGRGEKKKKKKKKKKKKKKKKKKKKKK--KKKYKKKKKKKKKKKKKKKKKKKKKKKK 1631
+ E + +K K + + K K +KK + ++K +KKK K K K K +
Sbjct: 194 KKAEAEAKAAAEKAKAEAEAKAKAEKKAEAAAEEKAAAEKKKAAAKAKADKAAAAAKAAE 253
Query: 1632 KK 1633
+K
Sbjct: 254 RK 255
Score = 43.4 bits (102), Expect = 8e-04
Identities = 17/69 (24%), Positives = 30/69 (43%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGG 1640
KKK + + K +K K + + K K +KK + ++K +KKK K K +
Sbjct: 191 AAKKKAEAEAKAAAEKAKAEAEAKAKAEKKAEAAAEEKAAAEKKKAAAKAKADKAAAAAK 250
Query: 1641 GGEKELVQK 1649
E++
Sbjct: 251 AAERKAAAA 259
Score = 42.6 bits (100), Expect = 0.002
Identities = 16/60 (26%), Positives = 27/60 (45%)
Query: 1574 ARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
A ++ + K +K K + + K K +KK + ++K +KKK K K K K
Sbjct: 191 AAKKKAEAEAKAAAEKAKAEAEAKAKAEKKAEAAAEEKAAAEKKKAAAKAKADKAAAAAK 250
Score = 42.2 bits (99), Expect = 0.002
Identities = 16/60 (26%), Positives = 27/60 (45%)
Query: 1574 ARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
A + + E + K +K K + + K K +KK + ++K +KKK K K K
Sbjct: 190 AAAKKKAEAEAKAAAEKAKAEAEAKAKAEKKAEAAAEEKAAAEKKKAAAKAKADKAAAAA 249
Score = 41.9 bits (98), Expect = 0.002
Identities = 17/71 (23%), Positives = 33/71 (46%)
Query: 1574 ARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
A+++ K ++ K K + KKK + + K +K K + + K K +KK + ++K
Sbjct: 169 AKKKAEEAAKAAEEAKAKAEAAAAKKKAEAEAKAAAEKAKAEAEAKAKAEKKAEAAAEEK 228
Query: 1634 YSREGGGGGEK 1644
+ E K
Sbjct: 229 AAAEKKKAAAK 239
Score = 41.5 bits (97), Expect = 0.003
Identities = 16/65 (24%), Positives = 29/65 (44%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGG 1640
E+ K K + KKK + + K +K K + + K K +KK + ++K +K
Sbjct: 181 EEAKAKAEAAAAKKKAEAEAKAAAEKAKAEAEAKAKAEKKAEAAAEEKAAAEKKKAAAKA 240
Query: 1641 GGEKE 1645
+K
Sbjct: 241 KADKA 245
Score = 41.5 bits (97), Expect = 0.003
Identities = 17/65 (26%), Positives = 28/65 (43%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGG 1640
KKK + + K +K K + + K K +KK + ++K +KKK K K +
Sbjct: 189 AAAAKKKAEAEAKAAAEKAKAEAEAKAKAEKKAEAAAEEKAAAEKKKAAAKAKADKAAAA 248
Query: 1641 GGEKE 1645
E
Sbjct: 249 AKAAE 253
Score = 40.7 bits (95), Expect = 0.006
Identities = 16/63 (25%), Positives = 29/63 (46%)
Query: 1571 DLLARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKK 1630
+ A+ + K + KKK + + K +K K + K K +KK + ++K +K
Sbjct: 174 EEAAKAAEEAKAKAEAAAAKKKAEAEAKAAAEKAKAEAEAKAKAEKKAEAAAEEKAAAEK 233
Query: 1631 KKK 1633
KK
Sbjct: 234 KKA 236
Score = 39.9 bits (93), Expect = 0.010
Identities = 15/54 (27%), Positives = 25/54 (46%)
Query: 1573 LARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKK 1626
A + + E + K K +KK + ++K +KKK K K K K ++K
Sbjct: 202 AAAEKAKAEAEAKAKAEKKAEAAAEEKAAAEKKKAAAKAKADKAAAAAKAAERK 255
Score = 39.2 bits (91), Expect = 0.015
Identities = 20/79 (25%), Positives = 33/79 (41%), Gaps = 5/79 (6%)
Query: 1576 REGRGEKKKK-----KKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKK 1630
+ E K K KKK + + K +K K + + K K +KK + ++K +KKK
Sbjct: 177 AKAAEEAKAKAEAAAAKKKAEAEAKAAAEKAKAEAEAKAKAEKKAEAAAEEKAAAEKKKA 236
Query: 1631 KKKYSREGGGGGEKELVQK 1649
K + K +K
Sbjct: 237 AAKAKADKAAAAAKAAERK 255
Score = 39.2 bits (91), Expect = 0.015
Identities = 16/60 (26%), Positives = 28/60 (46%)
Query: 1574 ARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
A+ + KKK + + K +K K + + K +KK + ++K +KKK K K
Sbjct: 183 AKAKAEAAAAKKKAEAEAKAAAEKAKAEAEAKAKAEKKAEAAAEEKAAAEKKKAAAKAKA 242
Score = 38.8 bits (90), Expect = 0.023
Identities = 17/64 (26%), Positives = 30/64 (46%)
Query: 1574 ARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
A+ + E KKK ++ K ++ K K + K K + + K +K K + + K K +KK
Sbjct: 161 AKLKAAAEAKKKAEEAAKAAEEAKAKAEAAAAKKKAEAEAKAAAEKAKAEAEAKAKAEKK 220
Query: 1634 YSRE 1637
Sbjct: 221 AEAA 224
Score = 37.6 bits (87), Expect = 0.047
Identities = 18/71 (25%), Positives = 27/71 (38%)
Query: 1574 ARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
A + K K + KKK ++ K + K K + KKK + + K +K K
Sbjct: 149 AEAAKAKAAAEAAKLKAAAEAKKKAEEAAKAAEEAKAKAEAAAAKKKAEAEAKAAAEKAK 208
Query: 1634 YSREGGGGGEK 1644
E EK
Sbjct: 209 AEAEAKAKAEK 219
Score = 37.6 bits (87), Expect = 0.051
Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 4/68 (5%)
Query: 1574 ARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKK----KKKKKKKKKKKK 1629
A ++ + E K K + K K + KKK ++ K ++ K K KKK + + K
Sbjct: 143 AEQKKKAEAAKAKAAAEAAKLKAAAEAKKKAEEAAKAAEEAKAKAEAAAAKKKAEAEAKA 202
Query: 1630 KKKKYSRE 1637
+K E
Sbjct: 203 AAEKAKAE 210
Score = 37.6 bits (87), Expect = 0.058
Identities = 19/62 (30%), Positives = 28/62 (45%)
Query: 1583 KKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGGGG 1642
+KKK + K K + K K + KKK ++ K ++ K K + KKK E
Sbjct: 145 QKKKAEAAKAKAAAEAAKLKAAAEAKKKAEEAAKAAEEAKAKAEAAAAKKKAEAEAKAAA 204
Query: 1643 EK 1644
EK
Sbjct: 205 EK 206
Score = 35.7 bits (82), Expect = 0.18
Identities = 17/58 (29%), Positives = 27/58 (46%)
Query: 1574 ARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKK 1631
AR+ +KKK + K K + K K + K K ++ K ++ K K + KKK
Sbjct: 138 ARKAAAEQKKKAEAAKAKAAAEAAKLKAAAEAKKKAEEAAKAAEEAKAKAEAAAAKKK 195
Score = 34.9 bits (80), Expect = 0.31
Identities = 16/73 (21%), Positives = 46/73 (63%)
Query: 1565 LGSYIVDLLARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKK 1624
+ + +VD A + G + ++ KK ++++KKK+++ ++ K K+ ++++ K+ +K+
Sbjct: 50 IDAVMVDPGAVVQQYGRIQSQQSSAKKGEQQRKKKEEQVAEELKPKQAAEQERLKQLEKE 109
Query: 1625 KKKKKKKKKYSRE 1637
+ K ++++K + E
Sbjct: 110 RLKAQEQQKQAEE 122
Score = 34.5 bits (79), Expect = 0.47
Identities = 14/71 (19%), Positives = 39/71 (54%)
Query: 1579 RGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREG 1638
R + ++++K+ ++ +K+ + ++K+++++ +K ++KKK + K K + K K + E
Sbjct: 110 RLKAQEQQKQAEEAEKQAQLEQKQQEEQARKAAAEQKKKAEAAKAKAAAEAAKLKAAAEA 169
Query: 1639 GGGGEKELVQK 1649
E+
Sbjct: 170 KKKAEEAAKAA 180
Score = 34.2 bits (78), Expect = 0.62
Identities = 17/64 (26%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 1574 ARREGRGEKKKKKKKKKK----KKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKK 1629
A ++ + E+K+++++ +K +KKK + K K + K K + KKK ++ K ++
Sbjct: 123 AEKQAQLEQKQQEEQARKAAAEQKKKAEAAKAKAAAEAAKLKAAAEAKKKAEEAAKAAEE 182
Query: 1630 KKKK 1633
K K
Sbjct: 183 AKAK 186
Score = 33.8 bits (77), Expect = 0.86
Identities = 13/62 (20%), Positives = 43/62 (69%)
Query: 1576 REGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYS 1635
++G ++KKK+++ ++ K K+ ++++ K+ +K++ K ++++K+ ++ +K+ + ++K
Sbjct: 75 KKGEQQRKKKEEQVAEELKPKQAAEQERLKQLEKERLKAQEQQKQAEEAEKQAQLEQKQQ 134
Query: 1636 RE 1637
E
Sbjct: 135 EE 136
Score = 33.4 bits (76), Expect = 0.98
Identities = 14/56 (25%), Positives = 30/56 (53%)
Query: 1574 ARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKK 1629
++ EK+ + ++K+++++ +K ++KKK K K + K K + KKK
Sbjct: 117 QKQAEEAEKQAQLEQKQQEEQARKAAAEQKKKAEAAKAKAAAEAAKLKAAAEAKKK 172
Score = 32.6 bits (74), Expect = 1.9
Identities = 13/57 (22%), Positives = 32/57 (56%)
Query: 1574 ARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKK 1630
+++ +K+ + ++K+++++ +K ++KKK + K K + K K + KKK
Sbjct: 116 QQKQAEEAEKQAQLEQKQQEEQARKAAAEQKKKAEAAKAKAAAEAAKLKAAAEAKKK 172
Score = 32.2 bits (73), Expect = 2.1
Identities = 12/58 (20%), Positives = 39/58 (67%)
Query: 1576 REGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
+ + KK ++++KKK+++ ++ K K+ +++ K+ +K++ K ++++K+ ++ +K
Sbjct: 68 QSQQSSAKKGEQQRKKKEEQVAEELKPKQAAEQERLKQLEKERLKAQEQQKQAEEAEK 125
Score = 31.8 bits (72), Expect = 3.0
Identities = 12/63 (19%), Positives = 37/63 (58%)
Query: 1575 RREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKY 1634
R + + ++K+ ++ +K+ + ++K+++++ +K ++KKK + K K + K K +
Sbjct: 110 RLKAQEQQKQAEEAEKQAQLEQKQQEEQARKAAAEQKKKAEAAKAKAAAEAAKLKAAAEA 169
Query: 1635 SRE 1637
++
Sbjct: 170 KKK 172
Score = 31.8 bits (72), Expect = 3.2
Identities = 13/60 (21%), Positives = 34/60 (56%)
Query: 1574 ARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
A+ + + ++ +K+ + ++K+++++ +K ++ KK + K K + K K + KKK
Sbjct: 113 AQEQQKQAEEAEKQAQLEQKQQEEQARKAAAEQKKKAEAAKAKAAAEAAKLKAAAEAKKK 172
Score = 31.5 bits (71), Expect = 3.8
Identities = 17/65 (26%), Positives = 30/65 (46%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGG 1640
E++ +K ++KKK + K K + K K + KKK ++ K ++ K K +
Sbjct: 135 EEQARKAAAEQKKKAEAAKAKAAAEAAKLKAAAEAKKKAEEAAKAAEEAKAKAEAAAAKK 194
Query: 1641 GGEKE 1645
E E
Sbjct: 195 KAEAE 199
>gnl|CDD|220376 pfam09745, DUF2040, Coiled-coil domain-containing protein 55
(DUF2040). This entry is a conserved domain of
approximately 130 residues of proteins conserved from
fungi to humans. The proteins do contain a coiled-coil
domain, but the function is unknown.
Length = 128
Score = 42.4 bits (100), Expect = 3e-04
Identities = 16/63 (25%), Positives = 38/63 (60%)
Query: 1583 KKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGGGG 1642
K K++KK+ K ++K+ +K KY + +++K++++ +++K +K+ +EG
Sbjct: 26 SIKAAKEEKKQAKLSERKENRKPKYIGSLLEAAERRKREREIAEERKLQKEREKEGDEFA 85
Query: 1643 EKE 1645
+KE
Sbjct: 86 DKE 88
>gnl|CDD|219655 pfam07946, DUF1682, Protein of unknown function (DUF1682). The
members of this family are all hypothetical eukaryotic
proteins of unknown function. One member is described as
being an adipocyte-specific protein, but no evidence of
this was found.
Length = 322
Score = 44.6 bits (106), Expect = 3e-04
Identities = 20/79 (25%), Positives = 49/79 (62%), Gaps = 10/79 (12%)
Query: 1568 YIVDLLARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKK---- 1623
Y+VD LA + E +K K ++++++K K +++++ + ++KK++KKK++++
Sbjct: 243 YLVDKLANLKLSPEVLRKVDKTREEEEEKILKAAEEERQEEAQEKKEEKKKEEREAKLAK 302
Query: 1624 ------KKKKKKKKKKYSR 1636
+K ++K++KK +R
Sbjct: 303 LSPEEQRKLEEKERKKQAR 321
Score = 39.2 bits (92), Expect = 0.013
Identities = 13/40 (32%), Positives = 31/40 (77%), Gaps = 2/40 (5%)
Query: 1581 EKKKKKKKKKKKKKKKKKKK--KKKKKKYKKKKKKKKKKK 1618
E ++KK++KKK++++ K K ++++K ++K++KK+ +K
Sbjct: 283 EAQEKKEEKKKEEREAKLAKLSPEEQRKLEEKERKKQARK 322
Score = 30.3 bits (69), Expect = 9.0
Identities = 10/50 (20%), Positives = 29/50 (58%)
Query: 1588 KKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSRE 1637
K + +K K +++ ++K K +++++++ ++KK++KKK+
Sbjct: 249 ANLKLSPEVLRKVDKTREEEEEKILKAAEEERQEEAQEKKEEKKKEEREA 298
>gnl|CDD|218612 pfam05501, DUF755, Domain of unknown function (DUF755). This family
is predominated by ORFs from Circoviridae. The function
of this family remains to be determined.
Length = 122
Score = 42.0 bits (99), Expect = 3e-04
Identities = 13/44 (29%), Positives = 28/44 (63%)
Query: 1592 KKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYS 1635
+ ++K+K+++K + +KKK+KK + + KK KK+++ S
Sbjct: 63 QPQRKRKEQQKSSQTHKKKRKKSRHVSSRSAKKISAKKRRRSSS 106
Score = 38.9 bits (91), Expect = 0.003
Identities = 13/43 (30%), Positives = 25/43 (58%)
Query: 1594 KKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSR 1636
+ ++K+K+++K KKK+KK + + KK KK++ S
Sbjct: 63 QPQRKRKEQQKSSQTHKKKRKKSRHVSSRSAKKISAKKRRRSS 105
Score = 38.9 bits (91), Expect = 0.003
Identities = 12/43 (27%), Positives = 26/43 (60%)
Query: 1582 KKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKK 1624
+ ++K+K+++K + KKK+KK + + KK KK+++
Sbjct: 63 QPQRKRKEQQKSSQTHKKKRKKSRHVSSRSAKKISAKKRRRSS 105
Score = 38.6 bits (90), Expect = 0.004
Identities = 12/43 (27%), Positives = 27/43 (62%)
Query: 1583 KKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKK 1625
+ ++K+K+++K + KKK+KK ++ + KK KK+++
Sbjct: 63 QPQRKRKEQQKSSQTHKKKRKKSRHVSSRSAKKISAKKRRRSS 105
Score = 38.6 bits (90), Expect = 0.005
Identities = 12/43 (27%), Positives = 26/43 (60%)
Query: 1585 KKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKK 1627
+ ++K+K+++K + KKK+KK + + KK KK+++
Sbjct: 63 QPQRKRKEQQKSSQTHKKKRKKSRHVSSRSAKKISAKKRRRSS 105
Score = 36.6 bits (85), Expect = 0.021
Identities = 12/43 (27%), Positives = 25/43 (58%)
Query: 1588 KKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKK 1630
+ ++K+K+++K + KKK KK + + KK KK+++
Sbjct: 63 QPQRKRKEQQKSSQTHKKKRKKSRHVSSRSAKKISAKKRRRSS 105
Score = 36.2 bits (84), Expect = 0.030
Identities = 12/43 (27%), Positives = 25/43 (58%)
Query: 1584 KKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKK 1626
+ ++K+K+++K + KKK+KK + KK KK+++
Sbjct: 63 QPQRKRKEQQKSSQTHKKKRKKSRHVSSRSAKKISAKKRRRSS 105
Score = 35.9 bits (83), Expect = 0.034
Identities = 12/52 (23%), Positives = 26/52 (50%)
Query: 1586 KKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSRE 1637
+ ++K+K+++K + KKK+K + + KK KK+++ S
Sbjct: 63 QPQRKRKEQQKSSQTHKKKRKKSRHVSSRSAKKISAKKRRRSSSSSSSSSSS 114
Score = 33.2 bits (76), Expect = 0.30
Identities = 11/40 (27%), Positives = 23/40 (57%)
Query: 1580 GEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKK 1619
++K+++K + KKK+KK + + KK KK+++
Sbjct: 66 RKRKEQQKSSQTHKKKRKKSRHVSSRSAKKISAKKRRRSS 105
Score = 32.8 bits (75), Expect = 0.45
Identities = 10/46 (21%), Positives = 24/46 (52%)
Query: 1572 LLARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKK 1617
L + + + ++++K + KKK+KK + + K KK+++
Sbjct: 60 QLQQPQRKRKEQQKSSQTHKKKRKKSRHVSSRSAKKISAKKRRRSS 105
Score = 29.3 bits (66), Expect = 5.9
Identities = 14/58 (24%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Query: 1584 KKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKK-----KKKKKKKKKYSR 1636
K+ +K + ++ ++ ++K+ +++K + KKK+KK + KK KK R
Sbjct: 46 KECQKTSQLIHLSQQLQQPQRKRKEQQKSSQTHKKKRKKSRHVSSRSAKKISAKKRRR 103
>gnl|CDD|221654 pfam12589, WBS_methylT, Methyltransferase involved in Williams-Beuren
syndrome. This domain family is found in eukaryotes, and
is typically between 72 and 83 amino acids in length. The
family is found in association with pfam08241. This
family is made up of S-adenosylmethionine-dependent
methyltransferases. The proteins are deleted in
Williams-Beuren syndrome (WBS), a complex developmental
disorder with multisystemic manifestations including
supravalvular aortic stenosis (SVAS) and a specific
cognitive phenotype.
Length = 85
Score = 40.7 bits (96), Expect = 3e-04
Identities = 15/45 (33%), Positives = 31/45 (68%)
Query: 1577 EGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKK 1621
+ K ++ ++ ++KKKKKKK KKK K++ +KK++ +++ K+
Sbjct: 26 QIDASKVRRISQRNRRKKKKKKKLKKKSKEWILRKKEQMRRRGKE 70
Score = 38.8 bits (91), Expect = 0.002
Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Query: 1566 GSYIVDLLARREGRGEKKKKKKKKKKKKKKKKKKK---KKKKKKYKKKKKK 1613
G + + + R ++ ++KKKKKKK KKK K +KK++ +++ K+
Sbjct: 20 GEEDDEQIDASKVRRISQRNRRKKKKKKKLKKKSKEWILRKKEQMRRRGKE 70
Score = 36.1 bits (84), Expect = 0.012
Identities = 17/48 (35%), Positives = 32/48 (66%)
Query: 1588 KKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYS 1635
K ++ ++ ++KKKKKKK KK K+ +KK++ +++ K+ K KY+
Sbjct: 31 KVRRISQRNRRKKKKKKKLKKKSKEWILRKKEQMRRRGKEVKPDSKYT 78
Score = 35.4 bits (82), Expect = 0.024
Identities = 15/40 (37%), Positives = 29/40 (72%)
Query: 1585 KKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKK 1624
K ++ ++ ++KKKKKKK KKK K+ +KK++ +++ K+
Sbjct: 31 KVRRISQRNRRKKKKKKKLKKKSKEWILRKKEQMRRRGKE 70
Score = 33.0 bits (76), Expect = 0.17
Identities = 16/38 (42%), Positives = 25/38 (65%)
Query: 1601 KKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREG 1638
K ++ + ++KKKKKKK KKK K+ +KK++ R G
Sbjct: 31 KVRRISQRNRRKKKKKKKLKKKSKEWILRKKEQMRRRG 68
Score = 32.7 bits (75), Expect = 0.25
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 1606 KYKKKKKKKKKKKKKKKKKKKKKKKKK 1632
K ++ ++ ++KKKKKKK KKK K
Sbjct: 28 DASKVRRISQRNRRKKKKKKKLKKKSK 54
>gnl|CDD|222447 pfam13904, DUF4207, Domain of unknown function (DUF4207). This
family is found in eukaryotes; it has several conserved
tryptophan residues. The function is not known.
Length = 261
Score = 44.3 bits (105), Expect = 3e-04
Identities = 26/134 (19%), Positives = 70/134 (52%), Gaps = 4/134 (2%)
Query: 1504 KQELIRYNRLTVIIKKSLQEVRQAVKGLIVMSKEL-EEINTSIMFGKIPQAWASKSYPSL 1562
KQ + ++ +K QE R+ + + + L +E K QA A + P
Sbjct: 96 KQAQRQKKLQKLLEEKQKQE-REKEREEAELRQRLAKEKYEEWCRQKAQQA-AKQRTPKH 153
Query: 1563 KPLGSYIVDLLARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKK 1622
K + + E+ +++ KK+ ++ + KK K++++ K++++++K++KK+++
Sbjct: 154 KKEAAESASSSLSGSAKPERNVSQEEAKKRLQEWELKKLKQQQQ-KREEERRKQRKKQQE 212
Query: 1623 KKKKKKKKKKKYSR 1636
++++K+K ++ + +
Sbjct: 213 EEERKQKAEEAWQK 226
Score = 36.6 bits (85), Expect = 0.086
Identities = 13/47 (27%), Positives = 37/47 (78%)
Query: 1582 KKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKK 1628
KK K++++K++++++K++KK+++++ +K+K ++ +K K K++ K
Sbjct: 190 KKLKQQQQKREEERRKQRKKQQEEEERKQKAEEAWQKWMKNVKQRPK 236
Score = 36.2 bits (84), Expect = 0.10
Identities = 13/62 (20%), Positives = 41/62 (66%), Gaps = 5/62 (8%)
Query: 1582 KKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKK-----KKKKKKKKKKKKKKYSR 1636
K+ +++KK +K ++K+K++++K++ + + +++ K+K ++K ++ K++ K+ +
Sbjct: 96 KQAQRQKKLQKLLEEKQKQEREKEREEAELRQRLAKEKYEEWCRQKAQQAAKQRTPKHKK 155
Query: 1637 EG 1638
E
Sbjct: 156 EA 157
Score = 33.9 bits (78), Expect = 0.51
Identities = 9/45 (20%), Positives = 35/45 (77%)
Query: 1575 RREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKK 1619
++ + +++++++K++KK+++++++K+K ++ ++K K K++ K
Sbjct: 192 LKQQQQKREEERRKQRKKQQEEEERKQKAEEAWQKWMKNVKQRPK 236
Score = 33.2 bits (76), Expect = 0.92
Identities = 10/49 (20%), Positives = 36/49 (73%)
Query: 1575 RREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKK 1623
+ ++++K++++++K++KK+++++++K+K ++ +K K K++ K
Sbjct: 188 ELKKLKQQQQKREEERRKQRKKQQEEEERKQKAEEAWQKWMKNVKQRPK 236
Score = 33.2 bits (76), Expect = 0.94
Identities = 10/59 (16%), Positives = 37/59 (62%), Gaps = 5/59 (8%)
Query: 1582 KKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKK-----KKKKKKKKKKKYS 1635
K+ +++KK +K ++K+K++++ ++++ + +++ K+K ++K ++ K++
Sbjct: 93 LSAKQAQRQKKLQKLLEEKQKQEREKEREEAELRQRLAKEKYEEWCRQKAQQAAKQRTP 151
Score = 32.8 bits (75), Expect = 1.4
Identities = 12/60 (20%), Positives = 38/60 (63%), Gaps = 6/60 (10%)
Query: 1581 EKKKKKKKKKKK------KKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKY 1634
K+ K +++ + K+ +++KK +K ++K+K++++K++++ + +++ K+KY
Sbjct: 75 SLKEVKLERQAQEAYENWLSAKQAQRQKKLQKLLEEKQKQEREKEREEAELRQRLAKEKY 134
Score = 32.0 bits (73), Expect = 2.3
Identities = 13/63 (20%), Positives = 31/63 (49%)
Query: 1575 RREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKY 1634
R + R E + +++ K+K ++ ++K ++ K + K KK+ + K ++
Sbjct: 116 REKEREEAELRQRLAKEKYEEWCRQKAQQAAKQRTPKHKKEAAESASSSLSGSAKPERNV 175
Query: 1635 SRE 1637
S+E
Sbjct: 176 SQE 178
Score = 32.0 bits (73), Expect = 2.5
Identities = 12/71 (16%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Query: 1572 LLARREGRGEKKKKKKKKKKKKKKKKKKKK-----KKKKKYKKKKKKKKKKKKKKKKKKK 1626
L E + +++++K++++ + +++ K+K ++K + K++ K KK+ +
Sbjct: 104 LQKLLEEKQKQEREKEREEAELRQRLAKEKYEEWCRQKAQQAAKQRTPKHKKEAAESASS 163
Query: 1627 KKKKKKKYSRE 1637
K R
Sbjct: 164 SLSGSAKPERN 174
Score = 31.6 bits (72), Expect = 2.8
Identities = 9/56 (16%), Positives = 38/56 (67%)
Query: 1582 KKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSRE 1637
K+ K +++ ++ + K+ +++ K +K ++K+K++++K++++ + +++ ++E
Sbjct: 77 KEVKLERQAQEAYENWLSAKQAQRQKKLQKLLEEKQKQEREKEREEAELRQRLAKE 132
Score = 31.2 bits (71), Expect = 3.7
Identities = 13/72 (18%), Positives = 38/72 (52%), Gaps = 16/72 (22%)
Query: 1582 KKKKKKKKKKKKKKKKK-----------KKKKKKKKYKKKKKKKK-----KKKKKKKKKK 1625
++K ++ K++ K KK K ++ +++ KK+ KK K++++K
Sbjct: 139 RQKAQQAAKQRTPKHKKEAAESASSSLSGSAKPERNVSQEEAKKRLQEWELKKLKQQQQK 198
Query: 1626 KKKKKKKKYSRE 1637
++++++K+ ++
Sbjct: 199 REEERRKQRKKQ 210
>gnl|CDD|185507 PTZ00191, PTZ00191, 60S ribosomal protein L23a; Provisional.
Length = 145
Score = 42.4 bits (100), Expect = 3e-04
Identities = 24/62 (38%), Positives = 28/62 (45%), Gaps = 6/62 (9%)
Query: 1580 GEKKKKKKKKKKKKKKKKKKKKKKKKKYKK------KKKKKKKKKKKKKKKKKKKKKKKK 1633
KK KKK KK K KK K KK+K K + KK K ++ K KK K
Sbjct: 3 PAKKAKKKAKKAAKAAKKGVKVKKRKVRTSVRFFRPKTLRLPKKPKYPRRVKPASKKLDK 62
Query: 1634 YS 1635
YS
Sbjct: 63 YS 64
Score = 41.6 bits (98), Expect = 6e-04
Identities = 21/51 (41%), Positives = 26/51 (50%)
Query: 1586 KKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSR 1636
K KK KKK KK K KK K KK+K + + + K + KK KY R
Sbjct: 1 KAPAKKAKKKAKKAAKAAKKGVKVKKRKVRTSVRFFRPKTLRLPKKPKYPR 51
Score = 38.9 bits (91), Expect = 0.005
Identities = 17/53 (32%), Positives = 26/53 (49%)
Query: 1579 RGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKK 1631
+K KK K KK K KK+K + ++ + K + KK K ++ K KK
Sbjct: 7 AKKKAKKAAKAAKKGVKVKKRKVRTSVRFFRPKTLRLPKKPKYPRRVKPASKK 59
Score = 31.6 bits (72), Expect = 1.7
Identities = 15/53 (28%), Positives = 25/53 (47%)
Query: 1576 REGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKK 1628
+ + +K K KK K KK+K + + + K + KK K ++ K KK
Sbjct: 7 AKKKAKKAAKAAKKGVKVKKRKVRTSVRFFRPKTLRLPKKPKYPRRVKPASKK 59
>gnl|CDD|220838 pfam10659, Trypan_glycop_C, Trypanosome variant surface glycoprotein
C-terminal domain. The trypanosome parasite expresses
these proteins to evade the immune response.
Length = 98
Score = 41.3 bits (97), Expect = 3e-04
Identities = 24/70 (34%), Positives = 30/70 (42%), Gaps = 11/70 (15%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKK-----------KKKKKKKKKKKKKK 1629
+K K K + K+K K KK+ K K K+ K KK +K K KK KK
Sbjct: 3 KKNKTKTECKEKGCKWDKKEDDGKCKPKEGKAKKNGAPVTQTAGTETTTEKCKGKKDKKD 62
Query: 1630 KKKKYSREGG 1639
KK EG
Sbjct: 63 CKKGCKWEGN 72
Score = 40.5 bits (95), Expect = 6e-04
Identities = 17/59 (28%), Positives = 25/59 (42%)
Query: 1577 EGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYS 1635
+ + + K K K+ K KK + + +K K KK KK KK K + K S
Sbjct: 19 DKKEDDGKCKPKEGKAKKNGAPVTQTAGTETTTEKCKGKKDKKDCKKGCKWEGNTCKDS 77
Score = 40.1 bits (94), Expect = 7e-04
Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 8/60 (13%)
Query: 1582 KKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKK--------KKKKKKKKKKKKKK 1633
KK K K + K+K K KK+ K K K+ K KK + +K K KK KK
Sbjct: 2 NKKNKTKTECKEKGCKWDKKEDDGKCKPKEGKAKKNGAPVTQTAGTETTTEKCKGKKDKK 61
Score = 38.2 bits (89), Expect = 0.003
Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 5/58 (8%)
Query: 1581 EKKKKKKKKKKKK-----KKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
KK K K + K+K KK+ K K K+ KK + + +K K KK
Sbjct: 2 NKKNKTKTECKEKGCKWDKKEDDGKCKPKEGKAKKNGAPVTQTAGTETTTEKCKGKKD 59
Score = 34.7 bits (80), Expect = 0.063
Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 2/50 (4%)
Query: 1598 KKKKKKKKKYKKKKKK--KKKKKKKKKKKKKKKKKKKKYSREGGGGGEKE 1645
KK K K + K+K K KK+ K K K+ K KK + G
Sbjct: 2 NKKNKTKTECKEKGCKWDKKEDDGKCKPKEGKAKKNGAPVTQTAGTETTT 51
Score = 33.2 bits (76), Expect = 0.20
Identities = 17/52 (32%), Positives = 22/52 (42%)
Query: 1593 KKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGGGGEK 1644
KK K K + K+K K KK+ K K K+ K KK + EK
Sbjct: 2 NKKNKTKTECKEKGCKWDKKEDDGKCKPKEGKAKKNGAPVTQTAGTETTTEK 53
>gnl|CDD|218797 pfam05890, Ebp2, Eukaryotic rRNA processing protein EBP2. This
family consists of several Eukaryotic rRNA processing
protein EBP2 sequences. Ebp2p is required for the
maturation of 25S rRNA and 60S subunit assembly. Ebp2p
may be one of the target proteins of Rrs1p for executing
the signal to regulate ribosome biogenesis. This family
also plays a role in chromosome segregation.
Length = 270
Score = 44.3 bits (105), Expect = 3e-04
Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 17/81 (20%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKK-----------------KYKKKKKKKKKKKKKKKK 1623
EK +++ K+KK +K KK KKK+K K KKK +K + K
Sbjct: 153 EKLQERAKEKKDMLEKIKKLKKKRKGGGDEGDLFDFLVDDAAKGGSKKKGRKGGAARGKP 212
Query: 1624 KKKKKKKKKKYSREGGGGGEK 1644
K+K K K+ G G K
Sbjct: 213 NAKRKAKDAKFGFGGKKRGSK 233
Score = 42.3 bits (100), Expect = 0.001
Identities = 20/78 (25%), Positives = 27/78 (34%), Gaps = 18/78 (23%)
Query: 1577 EGRGEKKKKKKKKKKKKKKKKKKKKKKKKKY----KKKKKKK--------------KKKK 1618
+G KKK +K + K K+K K K+ KK+ K KK K
Sbjct: 193 AAKGGSKKKGRKGGAARGKPNAKRKAKDAKFGFGGKKRGSKSNTAESSNDLSGFSVKKMK 252
Query: 1619 KKKKKKKKKKKKKKKYSR 1636
K K+ K R
Sbjct: 253 GGGGAGKGGNKRPGKSRR 270
Score = 41.9 bits (99), Expect = 0.002
Identities = 19/76 (25%), Positives = 24/76 (31%), Gaps = 17/76 (22%)
Query: 1580 GEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKK-----KKKKKKK------------KKKK 1622
+ K KKK +K + K K+K K K KK+ K KK
Sbjct: 191 DDAAKGGSKKKGRKGGAARGKPNAKRKAKDAKFGFGGKKRGSKSNTAESSNDLSGFSVKK 250
Query: 1623 KKKKKKKKKKKYSREG 1638
K K R G
Sbjct: 251 MKGGGGAGKGGNKRPG 266
Score = 40.8 bits (96), Expect = 0.004
Identities = 21/69 (30%), Positives = 40/69 (57%), Gaps = 3/69 (4%)
Query: 1581 EKKKKK--KKKKKKKKKKKKKKKKKKKKYKKK-KKKKKKKKKKKKKKKKKKKKKKKYSRE 1637
+K +KK + KK ++ +K+++ KK+ K+ + +K +++ K+KK +K KK K R+
Sbjct: 118 QKVRKKLLAEAAAKKASEEARKQRELKKFGKQVQVEKLQERAKEKKDMLEKIKKLKKKRK 177
Query: 1638 GGGGGEKEL 1646
GGG
Sbjct: 178 GGGDEGDLF 186
Score = 37.3 bits (87), Expect = 0.053
Identities = 16/68 (23%), Positives = 24/68 (35%), Gaps = 12/68 (17%)
Query: 1575 RREGRGEKKKKKKKKKKKKKK-----KKKKKKKKKKK-------YKKKKKKKKKKKKKKK 1622
R+G + K K+K K K KK+ K + + KK K K
Sbjct: 202 GRKGGAARGKPNAKRKAKDAKFGFGGKKRGSKSNTAESSNDLSGFSVKKMKGGGGAGKGG 261
Query: 1623 KKKKKKKK 1630
K+ K +
Sbjct: 262 NKRPGKSR 269
Score = 36.2 bits (84), Expect = 0.13
Identities = 24/97 (24%), Positives = 39/97 (40%), Gaps = 18/97 (18%)
Query: 1572 LLARREG--RGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKK-----KKKKKKKKK----- 1619
LLA E+ +K+++ KK K+ + +K +++ K KK KK KKK+K
Sbjct: 124 LLAEAAAKKASEEARKQRELKKFGKQVQVEKLQERAKEKKDMLEKIKKLKKKRKGGGDEG 183
Query: 1620 ------KKKKKKKKKKKKKKYSREGGGGGEKELVQKN 1650
K KKK + G + K+
Sbjct: 184 DLFDFLVDDAAKGGSKKKGRKGGAARGKPNAKRKAKD 220
>gnl|CDD|240246 PTZ00053, PTZ00053, methionine aminopeptidase 2; Provisional.
Length = 470
Score = 44.7 bits (106), Expect = 3e-04
Identities = 29/81 (35%), Positives = 42/81 (51%), Gaps = 10/81 (12%)
Query: 1580 GEKKKKKKKKKKKKKKKKKKKKKKKK----------KYKKKKKKKKKKKKKKKKKKKKKK 1629
GE + K++K++ K+K KKK KK KK + + ++ + K+ KKKKKKKKK
Sbjct: 6 GENEVKQQKQQNKQKGTKKKNKKSKKDVDDDDAFLAELISENQEAENKQNNKKKKKKKKK 65
Query: 1630 KKKKYSREGGGGGEKELVQKN 1650
KKKK E V +
Sbjct: 66 KKKKNLGEAYDLAYDLPVVWS 86
Score = 38.9 bits (91), Expect = 0.024
Identities = 22/75 (29%), Positives = 28/75 (37%), Gaps = 18/75 (24%)
Query: 1581 EKKKKKKKKKKKKKKKK------------------KKKKKKKKKYKKKKKKKKKKKKKKK 1622
+ K+K KKK KK KK + K+ KKK KKKKKKKKK +
Sbjct: 16 QNKQKGTKKKNKKSKKDVDDDDAFLAELISENQEAENKQNNKKKKKKKKKKKKKNLGEAY 75
Query: 1623 KKKKKKKKKKKYSRE 1637
+
Sbjct: 76 DLAYDLPVVWSSAAF 90
Score = 37.8 bits (88), Expect = 0.055
Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 9/66 (13%)
Query: 1577 EGRGEKKKKKKKKKKKKK---------KKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKK 1627
+ +K KKK KK KK + + ++ + K KKKKKKKKKKKKK +
Sbjct: 15 QQNKQKGTKKKNKKSKKDVDDDDAFLAELISENQEAENKQNNKKKKKKKKKKKKKNLGEA 74
Query: 1628 KKKKKK 1633
Sbjct: 75 YDLAYD 80
Score = 33.5 bits (77), Expect = 1.00
Identities = 15/40 (37%), Positives = 18/40 (45%)
Query: 1577 EGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKK 1616
E ++ KKKKKKKKKKKKK + Y
Sbjct: 49 EAENKQNNKKKKKKKKKKKKKNLGEAYDLAYDLPVVWSSA 88
Score = 32.8 bits (75), Expect = 1.9
Identities = 15/43 (34%), Positives = 19/43 (44%)
Query: 1577 EGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKK 1619
E + + K+ KKKKKKKKKKKKK +
Sbjct: 46 ENQEAENKQNNKKKKKKKKKKKKKNLGEAYDLAYDLPVVWSSA 88
Score = 32.0 bits (73), Expect = 2.8
Identities = 16/51 (31%), Positives = 21/51 (41%)
Query: 1571 DLLARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKK 1621
LA ++ + K+ KKKKKKKKKKKKK +
Sbjct: 38 AFLAELISENQEAENKQNNKKKKKKKKKKKKKNLGEAYDLAYDLPVVWSSA 88
>gnl|CDD|222581 pfam14181, YqfQ, YqfQ-like protein. The YqfQ-like protein family
includes the B. subtilis YqfQ protein, also known as
VrrA, which is functionally uncharacterized. This family
of proteins is found in bacteria. Proteins in this family
are typically between 146 and 237 amino acids in length.
There are two conserved sequence motifs: QYGP and PKLY.
Length = 155
Score = 42.4 bits (100), Expect = 3e-04
Identities = 17/55 (30%), Positives = 30/55 (54%)
Query: 1577 EGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKK 1631
E E++ + +++ + K + K+KKK+ K K +K+K K + KK K K K
Sbjct: 98 EEETEEESTDETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTEPKKPKPSKPK 152
Score = 41.3 bits (97), Expect = 9e-04
Identities = 16/47 (34%), Positives = 27/47 (57%)
Query: 1588 KKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKY 1634
+ +++ + K + K+KKK + K K +K+K K + KK K K K Y
Sbjct: 108 ETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTEPKKPKPSKPKLY 154
Score = 39.7 bits (93), Expect = 0.003
Identities = 15/57 (26%), Positives = 31/57 (54%)
Query: 1577 EGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
+ E +++ + +++ + K + K+KK ++ K K +K+K K + KK K K K
Sbjct: 96 DEEEETEEESTDETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTEPKKPKPSKPK 152
Score = 37.0 bits (86), Expect = 0.026
Identities = 14/42 (33%), Positives = 26/42 (61%)
Query: 1594 KKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYS 1635
+ +++ + K + K+KKK++ K K +K+K K + KK K S
Sbjct: 108 ETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTEPKKPKPS 149
Score = 29.7 bits (67), Expect = 7.4
Identities = 10/35 (28%), Positives = 20/35 (57%)
Query: 1603 KKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSRE 1637
+ ++ + K + K+KKK++ K K +K+K E
Sbjct: 108 ETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTE 142
>gnl|CDD|235778 PRK06319, PRK06319, DNA topoisomerase I/SWI domain fusion protein;
Validated.
Length = 860
Score = 45.2 bits (107), Expect = 4e-04
Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Query: 1547 FGKIPQAWASKSYPSLKPLGSYIVDLLARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKK 1606
F K+ ++ YP+ +G+ I ++ + G + +KK K KKK K K K K
Sbjct: 712 FNKM--FYSCSEYPACSVIGNSIDAVITKYAGTPKTPYEKKTKAKKKSASTKGKAAKTVK 769
Query: 1607 YKKKKKKKKKKKKKK 1621
K K K KK KK+
Sbjct: 770 KKSKAKSKKTTKKRA 784
Score = 44.0 bits (104), Expect = 8e-04
Identities = 18/37 (48%), Positives = 20/37 (54%)
Query: 1596 KKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKK 1632
+KK K KKK K K K KKK K K KK KK+
Sbjct: 748 EKKTKAKKKSASTKGKAAKTVKKKSKAKSKKTTKKRA 784
Score = 43.7 bits (103), Expect = 9e-04
Identities = 18/37 (48%), Positives = 20/37 (54%)
Query: 1597 KKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
+KK K KKK K K K KKK K K KK KK+
Sbjct: 748 EKKTKAKKKSASTKGKAAKTVKKKSKAKSKKTTKKRA 784
Score = 43.7 bits (103), Expect = 0.001
Identities = 18/37 (48%), Positives = 20/37 (54%)
Query: 1593 KKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKK 1629
+KK K KKK K K K KKK K K KK KK+
Sbjct: 748 EKKTKAKKKSASTKGKAAKTVKKKSKAKSKKTTKKRA 784
Score = 42.9 bits (101), Expect = 0.002
Identities = 18/37 (48%), Positives = 20/37 (54%)
Query: 1591 KKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKK 1627
+KK K KKK K K K KKK K K KK KK+
Sbjct: 748 EKKTKAKKKSASTKGKAAKTVKKKSKAKSKKTTKKRA 784
Score = 42.5 bits (100), Expect = 0.002
Identities = 18/41 (43%), Positives = 20/41 (48%)
Query: 1594 KKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKY 1634
+KK K KKK K K KKK K K KK KK+ Y
Sbjct: 748 EKKTKAKKKSASTKGKAAKTVKKKSKAKSKKTTKKRAGPLY 788
Score = 41.3 bits (97), Expect = 0.005
Identities = 17/37 (45%), Positives = 19/37 (51%)
Query: 1592 KKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKK 1628
+KK K KKK K K KKK K K KK KK+
Sbjct: 748 EKKTKAKKKSASTKGKAAKTVKKKSKAKSKKTTKKRA 784
Score = 38.6 bits (90), Expect = 0.029
Identities = 17/38 (44%), Positives = 18/38 (47%)
Query: 1601 KKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREG 1638
+KK K KK K K K KKK K K KK R G
Sbjct: 748 EKKTKAKKKSASTKGKAAKTVKKKSKAKSKKTTKKRAG 785
Score = 37.1 bits (86), Expect = 0.096
Identities = 15/30 (50%), Positives = 16/30 (53%)
Query: 1604 KKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
K Y+KK K KKK K K K KKK K
Sbjct: 744 KTPYEKKTKAKKKSASTKGKAAKTVKKKSK 773
>gnl|CDD|220431 pfam09831, DUF2058, Uncharacterized protein conserved in bacteria
(DUF2058). This domain, found in various prokaryotic
proteins, has no known function.
Length = 177
Score = 42.6 bits (101), Expect = 4e-04
Identities = 15/58 (25%), Positives = 36/58 (62%), Gaps = 7/58 (12%)
Query: 1582 KKKKKKKKKKKKKKKKKKKKKK-------KKKYKKKKKKKKKKKKKKKKKKKKKKKKK 1632
KKK KK KK+K+K++K+ +K K+ ++ K +K ++ ++ ++++ + ++K
Sbjct: 14 KKKAKKAKKEKRKQRKQARKGADDGDDELKQAAEEAKAEKAERDRELNRQRQAEAEQK 71
Score = 39.5 bits (93), Expect = 0.004
Identities = 16/71 (22%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 1581 EKKKKK-KKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGG 1639
+KK KK KK+K+K++K+ +K K+ ++ K +K ++ ++ ++++ + ++
Sbjct: 14 KKKAKKAKKEKRKQRKQARKGADDGDDELKQAAEEAKAEKAERDRELNRQRQAEAEQKAI 73
Query: 1640 GGGEKELVQKN 1650
K+L+++N
Sbjct: 74 VAQIKQLIEQN 84
>gnl|CDD|221712 pfam12687, DUF3801, Protein of unknown function (DUF3801). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria. Proteins in this
family are typically between 158 and 187 amino acids in
length. This family includes the PcfB protein.
Length = 137
Score = 41.9 bits (99), Expect = 4e-04
Identities = 20/45 (44%), Positives = 31/45 (68%)
Query: 1583 KKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKK 1627
K+ KK KK++ +K +KK KK+K+++ KKK++K K K KKK
Sbjct: 93 KEFTAKKLKKEQDEKPSVRKKLKKFKEEQAAKKKERKDKVKNKKK 137
Score = 39.2 bits (92), Expect = 0.004
Identities = 19/45 (42%), Positives = 29/45 (64%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKK 1625
++ KK KK++ +K +KK KK K ++ KKK++K K K KKK
Sbjct: 93 KEFTAKKLKKEQDEKPSVRKKLKKFKEEQAAKKKERKDKVKNKKK 137
Score = 38.4 bits (90), Expect = 0.006
Identities = 20/45 (44%), Positives = 30/45 (66%)
Query: 1586 KKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKK 1630
K+ KK KK++ +K +KK KK K+++ KKK++K K K KKK
Sbjct: 93 KEFTAKKLKKEQDEKPSVRKKLKKFKEEQAAKKKERKDKVKNKKK 137
Score = 37.6 bits (88), Expect = 0.012
Identities = 18/43 (41%), Positives = 28/43 (65%)
Query: 1591 KKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
K+ KK KK++ +K +KK KK K+++ KKK++K K K K
Sbjct: 93 KEFTAKKLKKEQDEKPSVRKKLKKFKEEQAAKKKERKDKVKNK 135
Score = 37.6 bits (88), Expect = 0.013
Identities = 19/44 (43%), Positives = 29/44 (65%)
Query: 1590 KKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
K+ KK KK++ +K +KK KK K+++ KKK++K K K KK
Sbjct: 93 KEFTAKKLKKEQDEKPSVRKKLKKFKEEQAAKKKERKDKVKNKK 136
Score = 33.8 bits (78), Expect = 0.22
Identities = 18/45 (40%), Positives = 29/45 (64%)
Query: 1576 REGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKK 1620
+E +K KK++ +K +KK KK K+++ KK++K K K KKK
Sbjct: 93 KEFTAKKLKKEQDEKPSVRKKLKKFKEEQAAKKKERKDKVKNKKK 137
Score = 31.1 bits (71), Expect = 1.8
Identities = 17/45 (37%), Positives = 28/45 (62%)
Query: 1592 KKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSR 1636
K+ KK KK++ +K +KK KK K+++ KKK++K K K +
Sbjct: 93 KEFTAKKLKKEQDEKPSVRKKLKKFKEEQAAKKKERKDKVKNKKK 137
>gnl|CDD|220271 pfam09507, CDC27, DNA polymerase subunit Cdc27. This protein forms
the C subunit of DNA polymerase delta. It carries the
essential residues for binding to the Pol1 subunit of
polymerase alpha, from residues 293-332, which are
characterized by the motif D--G--VT, referred to as the
DPIM motif. The first 160 residues of the protein form
the minimal domain for binding to the B subunit, Cdc1, of
polymerase delta, the final 10 C-terminal residues,
362-372, being the DNA sliding clamp, PCNA, binding
motif.
Length = 427
Score = 44.1 bits (104), Expect = 5e-04
Identities = 28/137 (20%), Positives = 50/137 (36%), Gaps = 14/137 (10%)
Query: 1504 KQELIRYNRLTVIIKKSLQEVRQAVKGLIVMSKELEEINTSIMFGKIPQAWASKSYPSLK 1563
K L + I +++ R+ GL ++ GK P S P
Sbjct: 118 KNSLEYGKQAGPITNPNVK--RRTGVGLPPVAPAASPALKPTANGKRPS-----SKPPKS 170
Query: 1564 PLGSYIVD------LLARREGRGEKKKKK-KKKKKKKKKKKKKKKKKKKKYKKKKKKKKK 1616
+ + +E EK + K K K+ KK + KKK K+KK
Sbjct: 171 IMSPEVKVKSAKKTQDTSKETTTEKTEGKTSVKAASLKRNPPKKSNIMSSFFKKKTKEKK 230
Query: 1617 KKKKKKKKKKKKKKKKK 1633
+KK+ + K++ +++
Sbjct: 231 EKKEASESTVKEESEEE 247
Score = 41.7 bits (98), Expect = 0.003
Identities = 21/91 (23%), Positives = 39/91 (42%), Gaps = 6/91 (6%)
Query: 1543 TSIMFGKIPQAWASKSYPSLKPLGSYIVDLLARREGRGEKKKKKKKKKKKKKKKKKKKKK 1602
SIM ++ A K+ + K + + EG+ K K+ KK
Sbjct: 169 KSIMSPEVKVKSAKKTQDTSKETTT------EKTEGKTSVKAASLKRNPPKKSNIMSSFF 222
Query: 1603 KKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
KKK +KK+KK+ + K++ +++ K+
Sbjct: 223 KKKTKEKKEKKEASESTVKEESEEESGKRDV 253
Score = 35.6 bits (82), Expect = 0.21
Identities = 23/81 (28%), Positives = 30/81 (37%), Gaps = 16/81 (19%)
Query: 1581 EKKKKKKKKKKKKKKKKKK---------KKKKKKKYKKKKKKKKKKKKKKK-------KK 1624
K K + K K KK +K + K K K+ KK KK
Sbjct: 165 SKPPKSIMSPEVKVKSAKKTQDTSKETTTEKTEGKTSVKAASLKRNPPKKSNIMSSFFKK 224
Query: 1625 KKKKKKKKKYSREGGGGGEKE 1645
K K+KK+KK + E E E
Sbjct: 225 KTKEKKEKKEASESTVKEESE 245
Score = 35.6 bits (82), Expect = 0.26
Identities = 14/57 (24%), Positives = 22/57 (38%)
Query: 1580 GEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSR 1636
G++ K K + K K KK + K+ +K + K K K+ K S
Sbjct: 160 GKRPSSKPPKSIMSPEVKVKSAKKTQDTSKETTTEKTEGKTSVKAASLKRNPPKKSN 216
Score = 34.8 bits (80), Expect = 0.44
Identities = 16/72 (22%), Positives = 31/72 (43%), Gaps = 8/72 (11%)
Query: 1582 KKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKK--------KKKKKKKKKKKKKKKKKKKK 1633
KKK K+KK+KK+ + K++ ++ K+ + + + + K ++
Sbjct: 222 FKKKTKEKKEKKEASESTVKEESEEESGKRDVILEDESAEPTGLDEDEDEDEPKPSGERS 281
Query: 1634 YSREGGGGGEKE 1645
S E EKE
Sbjct: 282 DSEEETEEKEKE 293
Score = 33.7 bits (77), Expect = 0.81
Identities = 18/87 (20%), Positives = 30/87 (34%), Gaps = 31/87 (35%)
Query: 1580 GEKKKKKKKKKKKK----KKKKKKKKKKKKKYK--------------------------- 1608
KK+++K++ +++ +++ KKK +K
Sbjct: 332 LPKKEEEKEEVTVSPDGGRRRGRRRVMKKKTFKDEEGYLVTKKVYEWESFSEDEAEPPPT 391
Query: 1609 KKKKKKKKKKKKKKKKKKKKKKKKKYS 1635
K K K KK K KKKK S
Sbjct: 392 KPKPKVSTPAVPAAAKKPKAPKKKKQS 418
Score = 33.7 bits (77), Expect = 0.98
Identities = 12/57 (21%), Positives = 30/57 (52%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSRE 1637
+KK K+KK+KK+ + K++ +++ K+ + + + + + + + K S E
Sbjct: 223 KKKTKEKKEKKEASESTVKEESEEESGKRDVILEDESAEPTGLDEDEDEDEPKPSGE 279
Score = 32.9 bits (75), Expect = 1.5
Identities = 18/101 (17%), Positives = 44/101 (43%), Gaps = 22/101 (21%)
Query: 1555 ASKSYPSLKPLGSYIVDLLARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKK-------- 1606
S SLK ++++ + K+KK+KK+ + K++ +++ K+
Sbjct: 200 TSVKAASLKRNPPKKSNIMSSFFKKKTKEKKEKKEASESTVKEESEEESGKRDVILEDES 259
Query: 1607 --------------YKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
K ++ +++ ++K+K+K+K+ KK
Sbjct: 260 AEPTGLDEDEDEDEPKPSGERSDSEEETEEKEKEKRKRLKK 300
Score = 32.5 bits (74), Expect = 2.1
Identities = 18/74 (24%), Positives = 29/74 (39%), Gaps = 16/74 (21%)
Query: 1578 GRGEKKKKKKKKKKKKKKKKK------KKKKKKKKY----------KKKKKKKKKKKKKK 1621
G +++ +++ KKK K + KK + + + K K K
Sbjct: 346 PDGGRRRGRRRVMKKKTFKDEEGYLVTKKVYEWESFSEDEAEPPPTKPKPKVSTPAVPAA 405
Query: 1622 KKKKKKKKKKKKYS 1635
KK K KKKK+ S
Sbjct: 406 AKKPKAPKKKKQSS 419
Score = 32.1 bits (73), Expect = 3.0
Identities = 11/56 (19%), Positives = 19/56 (33%)
Query: 1585 KKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGG 1640
K+ K K + K K K + K+ +K + K K K+ +
Sbjct: 161 KRPSSKPPKSIMSPEVKVKSAKKTQDTSKETTTEKTEGKTSVKAASLKRNPPKKSN 216
Score = 31.7 bits (72), Expect = 3.8
Identities = 9/57 (15%), Positives = 27/57 (47%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSRE 1637
EKK+KK+ + K++ +++ K+ + + + + + + + K ++ E
Sbjct: 228 EKKEKKEASESTVKEESEEESGKRDVILEDESAEPTGLDEDEDEDEPKPSGERSDSE 284
Score = 31.3 bits (71), Expect = 4.7
Identities = 11/56 (19%), Positives = 18/56 (32%)
Query: 1586 KKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGGG 1641
K+ K K + K K K + K+ +K + K K K +
Sbjct: 161 KRPSSKPPKSIMSPEVKVKSAKKTQDTSKETTTEKTEGKTSVKAASLKRNPPKKSN 216
Score = 31.3 bits (71), Expect = 5.0
Identities = 11/65 (16%), Positives = 30/65 (46%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGG 1640
++KK+KK+ + K++ +++ K+ + + + + + + + K + S
Sbjct: 227 KEKKEKKEASESTVKEESEEESGKRDVILEDESAEPTGLDEDEDEDEPKPSGERSDSEEE 286
Query: 1641 GGEKE 1645
EKE
Sbjct: 287 TEEKE 291
Score = 30.2 bits (68), Expect = 9.3
Identities = 13/61 (21%), Positives = 19/61 (31%)
Query: 1582 KKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGGG 1641
K K+ K K + K K KK + K+ +K + K K R
Sbjct: 155 KPTANGKRPSSKPPKSIMSPEVKVKSAKKTQDTSKETTTEKTEGKTSVKAASLKRNPPKK 214
Query: 1642 G 1642
Sbjct: 215 S 215
>gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional.
Length = 1388
Score = 44.7 bits (106), Expect = 6e-04
Identities = 25/69 (36%), Positives = 34/69 (49%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGG 1640
EK+ K+++ K K K K K +K K KK+KKKKK K KK K+ S E
Sbjct: 1149 EKEIAKEQRLKSKTKGKASKLRKPKLKKKEKKKKKSSADKSKKASVVGNSKRVDSDEKRK 1208
Query: 1641 GGEKELVQK 1649
+K +K
Sbjct: 1209 LDDKPDNKK 1217
Score = 42.7 bits (101), Expect = 0.002
Identities = 21/56 (37%), Positives = 30/56 (53%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSR 1636
E+ ++K+ K+++ K K K K K + K KKK+KKKKK K KK R
Sbjct: 1145 EEVEEKEIAKEQRLKSKTKGKASKLRKPKLKKKEKKKKKSSADKSKKASVVGNSKR 1200
Score = 42.7 bits (101), Expect = 0.002
Identities = 21/57 (36%), Positives = 30/57 (52%)
Query: 1583 KKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGG 1639
+ ++K+ K+++ K K K K K K K KKK+KKKKK K KK S+
Sbjct: 1146 EVEEKEIAKEQRLKSKTKGKASKLRKPKLKKKEKKKKKSSADKSKKASVVGNSKRVD 1202
Score = 42.7 bits (101), Expect = 0.002
Identities = 18/62 (29%), Positives = 31/62 (50%)
Query: 1576 REGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYS 1635
+ KKK KK+ + KKKKK +KK +KKK K + K+ + + ++ +K
Sbjct: 1301 KPSSPTKKKVKKRLEGSLAALKKKKKSEKKTARKKKSKTRVKQASASQSSRLLRRPRKKK 1360
Query: 1636 RE 1637
+
Sbjct: 1361 SD 1362
Score = 42.3 bits (100), Expect = 0.002
Identities = 21/65 (32%), Positives = 29/65 (44%)
Query: 1583 KKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGGGG 1642
K+++ K K K K K +K K KKK KKKKK K KK K+ R+
Sbjct: 1154 KEQRLKSKTKGKASKLRKPKLKKKEKKKKKSSADKSKKASVVGNSKRVDSDEKRKLDDKP 1213
Query: 1643 EKELV 1647
+ +
Sbjct: 1214 DNKKS 1218
Score = 42.0 bits (99), Expect = 0.003
Identities = 20/58 (34%), Positives = 28/58 (48%)
Query: 1579 RGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSR 1636
++K+ K+++ K K K K K +K KKK+KKKKK K KK K
Sbjct: 1145 EEVEEKEIAKEQRLKSKTKGKASKLRKPKLKKKEKKKKKSSADKSKKASVVGNSKRVD 1202
Score = 42.0 bits (99), Expect = 0.003
Identities = 24/66 (36%), Positives = 36/66 (54%)
Query: 1571 DLLARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKK 1630
DL E E+++ ++K+ K+++ K K K K K +K K KKK+KKKKK K KK
Sbjct: 1133 DLDKFEEALEEQEEVEEKEIAKEQRLKSKTKGKASKLRKPKLKKKEKKKKKSSADKSKKA 1192
Query: 1631 KKKYSR 1636
+
Sbjct: 1193 SVVGNS 1198
Score = 41.6 bits (98), Expect = 0.004
Identities = 20/59 (33%), Positives = 31/59 (52%)
Query: 1587 KKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGGGGEKE 1645
+ ++K+ K+++ K K K K K +K K KKK+KKKKK K KK + +
Sbjct: 1146 EVEEKEIAKEQRLKSKTKGKASKLRKPKLKKKEKKKKKSSADKSKKASVVGNSKRVDSD 1204
Score = 41.2 bits (97), Expect = 0.006
Identities = 22/70 (31%), Positives = 30/70 (42%)
Query: 1576 REGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYS 1635
+ K +K K KKK+KKKKK K KK K+ +K+K K KK S
Sbjct: 1161 KTKGKASKLRKPKLKKKEKKKKKSSADKSKKASVVGNSKRVDSDEKRKLDDKPDNKKSNS 1220
Query: 1636 REGGGGGEKE 1645
++E
Sbjct: 1221 SGSDQEDDEE 1230
Score = 41.2 bits (97), Expect = 0.006
Identities = 21/62 (33%), Positives = 30/62 (48%)
Query: 1586 KKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGGGGEKE 1645
+ ++K+ K+++ K K K K K +K K KKK+KKKKK K KK E
Sbjct: 1146 EVEEKEIAKEQRLKSKTKGKASKLRKPKLKKKEKKKKKSSADKSKKASVVGNSKRVDSDE 1205
Query: 1646 LV 1647
Sbjct: 1206 KR 1207
Score = 41.2 bits (97), Expect = 0.006
Identities = 22/83 (26%), Positives = 36/83 (43%)
Query: 1555 ASKSYPSLKPLGSYIVDLLARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKK 1614
S PS +P G + + KK+ + KKKKK +KK +K K K + K
Sbjct: 1283 YSPPPPSKRPDGESNGGSKPSSPTKKKVKKRLEGSLAALKKKKKSEKKTARKKKSKTRVK 1342
Query: 1615 KKKKKKKKKKKKKKKKKKKYSRE 1637
+ + + ++ +KKK S
Sbjct: 1343 QASASQSSRLLRRPRKKKSDSSS 1365
Score = 40.8 bits (96), Expect = 0.007
Identities = 22/64 (34%), Positives = 30/64 (46%)
Query: 1570 VDLLARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKK 1629
V+ + + K K K K K +K K KKK+KKKKK K KK K+ +K
Sbjct: 1147 VEEKEIAKEQRLKSKTKGKASKLRKPKLKKKEKKKKKSSADKSKKASVVGNSKRVDSDEK 1206
Query: 1630 KKKK 1633
+K
Sbjct: 1207 RKLD 1210
Score = 40.8 bits (96), Expect = 0.008
Identities = 21/60 (35%), Positives = 36/60 (60%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGG 1640
E+ +++++ ++K+ K+++ K K K K K +K K KKK+KKKKK K K + G
Sbjct: 1138 EEALEEQEEVEEKEIAKEQRLKSKTKGKASKLRKPKLKKKEKKKKKSSADKSKKASVVGN 1197
Score = 40.8 bits (96), Expect = 0.008
Identities = 22/83 (26%), Positives = 32/83 (38%)
Query: 1562 LKPLGSYIVDLLARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKK 1621
L + + E K+++ K K K K K +K K KKK+ KKKK K KK
Sbjct: 1134 LDKFEEALEEQEEVEEKEIAKEQRLKSKTKGKASKLRKPKLKKKEKKKKKSSADKSKKAS 1193
Query: 1622 KKKKKKKKKKKKYSREGGGGGEK 1644
K+ + + K
Sbjct: 1194 VVGNSKRVDSDEKRKLDDKPDNK 1216
Score = 40.0 bits (94), Expect = 0.013
Identities = 24/72 (33%), Positives = 30/72 (41%)
Query: 1579 RGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREG 1638
K K +K K KKK+KKKKK K K K+ +K+K K K S
Sbjct: 1162 TKGKASKLRKPKLKKKEKKKKKSSADKSKKASVVGNSKRVDSDEKRKLDDKPDNKKSNSS 1221
Query: 1639 GGGGEKELVQKN 1650
G E + QK
Sbjct: 1222 GSDQEDDEEQKT 1233
Score = 40.0 bits (94), Expect = 0.014
Identities = 21/64 (32%), Positives = 28/64 (43%)
Query: 1576 REGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYS 1635
+ GE K KKK KK+ + KKKKK +KK +KKK K + K+ S
Sbjct: 1290 KRPDGESNGGSKPSSPTKKKVKKRLEGSLAALKKKKKSEKKTARKKKSKTRVKQASASQS 1349
Query: 1636 REGG 1639
Sbjct: 1350 SRLL 1353
Score = 39.3 bits (92), Expect = 0.021
Identities = 18/60 (30%), Positives = 30/60 (50%)
Query: 1579 RGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREG 1638
+ KK+ + KKKKK +KK +KK K + K+ + + ++ +KKK S E
Sbjct: 1308 KKVKKRLEGSLAALKKKKKSEKKTARKKKSKTRVKQASASQSSRLLRRPRKKKSDSSSED 1367
Score = 38.9 bits (91), Expect = 0.026
Identities = 20/69 (28%), Positives = 32/69 (46%)
Query: 1582 KKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGGG 1641
KK KK+ + KKKKK +KK KKK K + K+ + + ++ +KK S
Sbjct: 1308 KKVKKRLEGSLAALKKKKKSEKKTARKKKSKTRVKQASASQSSRLLRRPRKKKSDSSSED 1367
Query: 1642 GEKELVQKN 1650
+ V +
Sbjct: 1368 DDDSEVDDS 1376
Score = 38.9 bits (91), Expect = 0.027
Identities = 26/102 (25%), Positives = 39/102 (38%)
Query: 1535 SKELEEINTSIMFGKIPQAWASKSYPSLKPLGSYIVDLLARREGRGEKKKKKKKKKKKKK 1594
S + E N + + K+ P Y ++R K KKK
Sbjct: 1250 SSKSSEDNDEFSSDDLSKEGKPKNAPKRVSAVQYSPPPPSKRPDGESNGGSKPSSPTKKK 1309
Query: 1595 KKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSR 1636
KK+ + KKKK +KK +KKK K + K+ + SR
Sbjct: 1310 VKKRLEGSLAALKKKKKSEKKTARKKKSKTRVKQASASQSSR 1351
Score = 38.9 bits (91), Expect = 0.029
Identities = 22/69 (31%), Positives = 30/69 (43%)
Query: 1582 KKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGGG 1641
K +K K KKK+KKKKK K KK K+ +K+K K KK S
Sbjct: 1168 KLRKPKLKKKEKKKKKSSADKSKKASVVGNSKRVDSDEKRKLDDKPDNKKSNSSGSDQED 1227
Query: 1642 GEKELVQKN 1650
E++ +
Sbjct: 1228 DEEQKTKPK 1236
Score = 37.7 bits (88), Expect = 0.061
Identities = 20/70 (28%), Positives = 40/70 (57%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGG 1640
+K ++ +++++ ++K+ K+++ K K K K +K K KKK+KKKKK S++
Sbjct: 1135 DKFEEALEEQEEVEEKEIAKEQRLKSKTKGKASKLRKPKLKKKEKKKKKSSADKSKKASV 1194
Query: 1641 GGEKELVQKN 1650
G + V +
Sbjct: 1195 VGNSKRVDSD 1204
Score = 36.6 bits (85), Expect = 0.15
Identities = 21/82 (25%), Positives = 32/82 (39%)
Query: 1555 ASKSYPSLKPLGSYIVDLLARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKK 1614
A K +++ G K KKK KK+ + KKKK +KK +
Sbjct: 1274 APKRVSAVQYSPPPPSKRPDGESNGGSKPSSPTKKKVKKRLEGSLAALKKKKKSEKKTAR 1333
Query: 1615 KKKKKKKKKKKKKKKKKKKYSR 1636
KKK K + K+ + + R
Sbjct: 1334 KKKSKTRVKQASASQSSRLLRR 1355
Score = 33.9 bits (78), Expect = 0.92
Identities = 19/72 (26%), Positives = 26/72 (36%)
Query: 1579 RGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREG 1638
R K KKK+KKKKK K KK K+ +K+K K KK +
Sbjct: 1170 RKPKLKKKEKKKKKSSADKSKKASVVGNSKRVDSDEKRKLDDKPDNKKSNSSGSDQEDDE 1229
Query: 1639 GGGGEKELVQKN 1650
+ +
Sbjct: 1230 EQKTKPKKSSVK 1241
Score = 32.7 bits (75), Expect = 2.1
Identities = 19/72 (26%), Positives = 28/72 (38%)
Query: 1574 ARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
A + + + KKK+KKKKK K KK + +K+K K KK +
Sbjct: 1166 ASKLRKPKLKKKEKKKKKSSADKSKKASVVGNSKRVDSDEKRKLDDKPDNKKSNSSGSDQ 1225
Query: 1634 YSREGGGGGEKE 1645
E K+
Sbjct: 1226 EDDEEQKTKPKK 1237
>gnl|CDD|220371 pfam09736, Bud13, Pre-mRNA-splicing factor of RES complex. This
entry is characterized by proteins with alternating
conserved and low-complexity regions. Bud13 together with
Snu17p and a newly identified factor, Pml1p/Ylr016c, form
a novel trimeric complex. called The RES complex,
pre-mRNA retention and splicing complex. Subunits of this
complex are not essential for viability of yeasts but
they are required for efficient splicing in vitro and in
vivo. Furthermore, inactivation of this complex causes
pre-mRNA leakage from the nucleus. Bud13 contains a
unique, phylogenetically conserved C-terminal region of
unknown function.
Length = 141
Score = 41.5 bits (98), Expect = 6e-04
Identities = 15/54 (27%), Positives = 41/54 (75%)
Query: 1578 GRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKK 1631
GR ++K+++K+++K++K++K++K+K++ K +K++++K+ ++ +K K K
Sbjct: 9 GRIIDIEEKREEKEREKEEKERKEEKEKEWGKGLVQKEEREKRLEELEKAKNKP 62
Score = 40.4 bits (95), Expect = 0.002
Identities = 13/52 (25%), Positives = 38/52 (73%)
Query: 1582 KKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
+ ++K+++K+++K++K++K++K K+ K +K++++K+ ++ +K K K
Sbjct: 10 RIIDIEEKREEKEREKEEKERKEEKEKEWGKGLVQKEEREKRLEELEKAKNK 61
Score = 38.1 bits (89), Expect = 0.010
Identities = 14/53 (26%), Positives = 40/53 (75%)
Query: 1582 KKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKY 1634
++K+++K+++K++K++K++K+K+ K +K++++K+ ++ +K K K +Y
Sbjct: 14 IEEKREEKEREKEEKERKEEKEKEWGKGLVQKEEREKRLEELEKAKNKPLARY 66
Score = 37.7 bits (88), Expect = 0.013
Identities = 15/53 (28%), Positives = 38/53 (71%)
Query: 1575 RREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKK 1627
R EK+++K+++K++K++K++K+K+ K +K++++K+ ++ +K K K
Sbjct: 10 RIIDIEEKREEKEREKEEKERKEEKEKEWGKGLVQKEEREKRLEELEKAKNKP 62
Score = 35.7 bits (83), Expect = 0.052
Identities = 22/96 (22%), Positives = 50/96 (52%), Gaps = 29/96 (30%)
Query: 1569 IVDLLARREGRGEKKKKKKKKKKKKK---------KKKKKKKKKKKKYKKKK-------- 1611
I+D+ +RE + +K++K++K++K+K ++++K+ ++ +K K K
Sbjct: 11 IIDIEEKREEKEREKEEKERKEEKEKEWGKGLVQKEEREKRLEELEKAKNKPLARYADDE 70
Query: 1612 ---KKKKKKKK---------KKKKKKKKKKKKKKYS 1635
++ K++++ +KKK+K KK K Y
Sbjct: 71 DYDEELKEQERWDDPMAQFLRKKKEKTDKKGKPLYK 106
Score = 33.4 bits (77), Expect = 0.36
Identities = 10/49 (20%), Positives = 33/49 (67%)
Query: 1589 KKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSRE 1637
K + ++K+++K+++ ++K++K++K+K+ K +K++++K+
Sbjct: 7 KSGRIIDIEEKREEKEREKEEKERKEEKEKEWGKGLVQKEEREKRLEEL 55
Score = 30.7 bits (70), Expect = 3.0
Identities = 12/42 (28%), Positives = 27/42 (64%), Gaps = 5/42 (11%)
Query: 1609 KKKKKKKKKKKKKKKKKKKKKKKKKYSREGGGGGEKELVQKN 1650
+ ++K+++K+++K++K++K++K G G LVQK
Sbjct: 10 RIIDIEEKREEKEREKEEKERKEEKEKEWGKG-----LVQKE 46
>gnl|CDD|221857 pfam12923, RRP7, Ribosomal RNA-processing protein 7 (RRP7). RRP7 is
an essential protein in yeast that is involved in
pre-rRNA processing and ribosome assembly. It is
speculated to be required for correct assembly of rpS27
into the pre-ribosomal particle.
Length = 131
Score = 41.1 bits (97), Expect = 6e-04
Identities = 21/68 (30%), Positives = 43/68 (63%), Gaps = 8/68 (11%)
Query: 1575 RREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKK----KKK----KKKKK 1626
+R+ + K ++++K K+KKKKKKK+ + Y+ + ++KKK++ +KK KK+ +
Sbjct: 61 KRKAGASRNKAAEERRKLKEKKKKKKKELENFYRFQIREKKKEELAELRKKFEEDKKRIE 120
Query: 1627 KKKKKKKY 1634
+ K +K+
Sbjct: 121 QLKAARKF 128
Score = 38.4 bits (90), Expect = 0.005
Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 12/69 (17%)
Query: 1566 GSYIVDLLARREGRGEKKKKKKKKKKKKKKKK-------KKKKKKK-----KKYKKKKKK 1613
G +R + E++K K+KKKKKKK+ + ++KKK++ KK+++ KK+
Sbjct: 59 GRKRKAGASRNKAAEERRKLKEKKKKKKKELENFYRFQIREKKKEELAELRKKFEEDKKR 118
Query: 1614 KKKKKKKKK 1622
++ K +K
Sbjct: 119 IEQLKAARK 127
Score = 37.6 bits (88), Expect = 0.010
Identities = 22/71 (30%), Positives = 41/71 (57%), Gaps = 10/71 (14%)
Query: 1574 ARREGRGEKKKKKKKKKKKKKKKKKKKKKK------KKKYKKKK----KKKKKKKKKKKK 1623
R+ G K ++++K K+KKKKKKK+ + ++ KK++ +KK ++ KK+ +
Sbjct: 61 KRKAGASRNKAAEERRKLKEKKKKKKKELENFYRFQIREKKKEELAELRKKFEEDKKRIE 120
Query: 1624 KKKKKKKKKKY 1634
+ K +K K Y
Sbjct: 121 QLKAARKFKPY 131
Score = 36.4 bits (85), Expect = 0.025
Identities = 17/63 (26%), Positives = 35/63 (55%), Gaps = 11/63 (17%)
Query: 1581 EKKKKKKKKKKKKKKKK-----------KKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKK 1629
EK K++++ K++ K + + +K+K + K ++++K K+KKKKKKK
Sbjct: 28 EKYDKREEEAKEEAKARSEPDEDGWTTVTRGGRKRKAGASRNKAAEERRKLKEKKKKKKK 87
Query: 1630 KKK 1632
+ +
Sbjct: 88 ELE 90
Score = 33.3 bits (77), Expect = 0.30
Identities = 12/34 (35%), Positives = 23/34 (67%)
Query: 1600 KKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
+ +K+K + K ++++K K+KKKKKKK+ +
Sbjct: 57 RGGRKRKAGASRNKAAEERRKLKEKKKKKKKELE 90
>gnl|CDD|236978 PRK11778, PRK11778, putative inner membrane peptidase; Provisional.
Length = 330
Score = 43.7 bits (104), Expect = 6e-04
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 12/64 (18%)
Query: 1583 KKKKKKKK------------KKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKK 1630
++KK +K K+ K++ K KK+ K K +KKK+K++ K K K K
Sbjct: 30 AQRKKSQKGELEVTNLNEQYKEMKEELKAALLDKKELKAWHKAQKKKEKQEAKAAKAKSK 89
Query: 1631 KKKY 1634
+ +
Sbjct: 90 PRLF 93
Score = 41.4 bits (98), Expect = 0.003
Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 1569 IVDLLAR-REGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKK 1627
IV L R + +GE + ++ K+ K++ K KK K K +KKK+K++ K K
Sbjct: 26 IVSLAQRKKSQKGELEVTNLNEQYKEMKEELKAALLDKKELKAWHKAQKKKEKQEAKAAK 85
Query: 1628 KKKKKK 1633
K K +
Sbjct: 86 AKSKPR 91
Score = 37.9 bits (89), Expect = 0.037
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 7/62 (11%)
Query: 1582 KKKKKKKKKK-------KKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKY 1634
++KK +K + ++ K+ K++ K KK+ K K +KKK+K++ K K K
Sbjct: 30 AQRKKSQKGELEVTNLNEQYKEMKEELKAALLDKKELKAWHKAQKKKEKQEAKAAKAKSK 89
Query: 1635 SR 1636
R
Sbjct: 90 PR 91
Score = 35.6 bits (83), Expect = 0.19
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 1571 DLLARREGRGEKKK--KKKKKKKKKKKKKKKKKKKKKKY 1607
+L A + E K K +KKK+K++ K K K K + +
Sbjct: 55 ELKAALLDKKELKAWHKAQKKKEKQEAKAAKAKSKPRLF 93
>gnl|CDD|218177 pfam04615, Utp14, Utp14 protein. This protein is found to be part of
a large ribonucleoprotein complex containing the U3
snoRNA. Depletion of the Utp proteins impedes production
of the 18S rRNA, indicating that they are part of the
active pre-rRNA processing complex. This large RNP
complex has been termed the small subunit (SSU)
processome.
Length = 728
Score = 43.9 bits (104), Expect = 9e-04
Identities = 20/57 (35%), Positives = 22/57 (38%)
Query: 1577 EGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
E K K KK+ KKK K K K K K KKKKKK+K
Sbjct: 493 ENPWLKTTSSVGKSAKKQDSKKKSSSKLDKAANKISKAAVKVKKKKKKEKSIDLDDD 549
Score = 43.5 bits (103), Expect = 0.001
Identities = 19/56 (33%), Positives = 21/56 (37%)
Query: 1582 KKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSRE 1637
K KK+ KKK K K K K K KKKKKK+K E
Sbjct: 499 TTSSVGKSAKKQDSKKKSSSKLDKAANKISKAAVKVKKKKKKEKSIDLDDDLIDEE 554
Score = 42.0 bits (99), Expect = 0.003
Identities = 18/51 (35%), Positives = 20/51 (39%)
Query: 1585 KKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYS 1635
K K KK+ KKK K K K K KKKKKK+K
Sbjct: 497 LKTTSSVGKSAKKQDSKKKSSSKLDKAANKISKAAVKVKKKKKKEKSIDLD 547
Score = 38.9 bits (91), Expect = 0.025
Identities = 19/65 (29%), Positives = 24/65 (36%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGG 1640
K KK+ KKK K K K K KKKKKK+K ++ +
Sbjct: 503 VGKSAKKQDSKKKSSSKLDKAANKISKAAVKVKKKKKKEKSIDLDDDLIDEEDSIKLDVD 562
Query: 1641 GGEKE 1645
E E
Sbjct: 563 DEEDE 567
Score = 38.5 bits (90), Expect = 0.034
Identities = 21/77 (27%), Positives = 27/77 (35%), Gaps = 2/77 (2%)
Query: 1576 REGRGEKKKKKKKKKKKKKKKK--KKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
G+ KK+ KKK K K K K K KKKKK+K ++ K
Sbjct: 502 SVGKSAKKQDSKKKSSSKLDKAANKISKAAVKVKKKKKKEKSIDLDDDLIDEEDSIKLDV 561
Query: 1634 YSREGGGGGEKELVQKN 1650
E E + K
Sbjct: 562 DDEEDEDDEELPFLFKQ 578
Score = 37.7 bits (88), Expect = 0.056
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 15/67 (22%)
Query: 1582 KKKKKKKKKKKK----------KKKKKKKKKKKKKYKKKKKKKKK-----KKKKKKKKKK 1626
K+ +K +K++++ K K KK+ KKK K K K K K
Sbjct: 476 KRSEKAQKEEEEEELDEENPWLKTTSSVGKSAKKQDSKKKSSSKLDKAANKISKAAVKVK 535
Query: 1627 KKKKKKK 1633
KKKKK+K
Sbjct: 536 KKKKKEK 542
Score = 37.0 bits (86), Expect = 0.090
Identities = 17/57 (29%), Positives = 34/57 (59%)
Query: 1577 EGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
GEK+ + KK KK+ K + K+KK+ ++ + + +++ K +K K K+ +K +K
Sbjct: 427 PENGEKEAESKKLKKENKNEFKEKKESDEEEELEDEEEAKVEKVANKLLKRSEKAQK 483
Score = 36.6 bits (85), Expect = 0.13
Identities = 20/46 (43%), Positives = 30/46 (65%)
Query: 1589 KKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKY 1634
KK+KKK+K+K++ K + KK+K+K KK K +K+ KK KY
Sbjct: 627 KKRKKKRKRKRRFLTKIEGVKKEKRKDKKLKNVIINEKRNKKAAKY 672
Score = 36.2 bits (84), Expect = 0.16
Identities = 15/31 (48%), Positives = 23/31 (74%)
Query: 1588 KKKKKKKKKKKKKKKKKKKYKKKKKKKKKKK 1618
KK+KKK+K+K++ K + KK+K+K KK K
Sbjct: 627 KKRKKKRKRKRRFLTKIEGVKKEKRKDKKLK 657
Score = 36.2 bits (84), Expect = 0.18
Identities = 17/57 (29%), Positives = 34/57 (59%)
Query: 1575 RREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKK 1631
RRE GE++ +++ ++ KK ++K + +K+ + KK KK+ K + K+KK+
Sbjct: 398 RRELEGEEESDEEENEEPSKKNVGRRKFGPENGEKEAESKKLKKENKNEFKEKKESD 454
Score = 35.4 bits (82), Expect = 0.28
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 1583 KKKKKKKKKKKKKKKKKKKKKKKKYKKKKKK 1613
KK+KKK+K+K++ K + KK+K K KK K
Sbjct: 627 KKRKKKRKRKRRFLTKIEGVKKEKRKDKKLK 657
Score = 35.4 bits (82), Expect = 0.30
Identities = 14/59 (23%), Positives = 33/59 (55%)
Query: 1575 RREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
E E+ ++ KK ++K + +K+ + KK KK+ K + K+KK+ ++++ + +
Sbjct: 404 EEESDEEENEEPSKKNVGRRKFGPENGEKEAESKKLKKENKNEFKEKKESDEEEELEDE 462
Score = 35.0 bits (81), Expect = 0.41
Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 6/63 (9%)
Query: 1577 EGRGEKKKKKKKKKKKKKKKKKKKKKKKKK------YKKKKKKKKKKKKKKKKKKKKKKK 1630
E E K +K K K+ +K +K++++++ + K K KK+ KKK K
Sbjct: 460 EDEEEAKVEKVANKLLKRSEKAQKEEEEEELDEENPWLKTTSSVGKSAKKQDSKKKSSSK 519
Query: 1631 KKK 1633
K
Sbjct: 520 LDK 522
Score = 35.0 bits (81), Expect = 0.44
Identities = 16/35 (45%), Positives = 24/35 (68%)
Query: 1578 GRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKK 1612
G G KK+KKK+K+K++ K + KK+K+ KK K
Sbjct: 623 GDGIKKRKKKRKRKRRFLTKIEGVKKEKRKDKKLK 657
Score = 34.6 bits (80), Expect = 0.46
Identities = 23/85 (27%), Positives = 33/85 (38%), Gaps = 21/85 (24%)
Query: 1570 VDLLARREGRGEKKKKKKKKKKKKKKKKKK-----------KKKKKKKYKKKKKKKKKK- 1617
+L E + EK K K+ +K +K+++ K KK+ KKK
Sbjct: 457 EELEDEEEAKVEKVANKLLKRSEKAQKEEEEEELDEENPWLKTTSSVGKSAKKQDSKKKS 516
Query: 1618 ---------KKKKKKKKKKKKKKKK 1633
K K K KKKKKK+
Sbjct: 517 SSKLDKAANKISKAAVKVKKKKKKE 541
Score = 34.6 bits (80), Expect = 0.49
Identities = 14/31 (45%), Positives = 22/31 (70%)
Query: 1587 KKKKKKKKKKKKKKKKKKKKYKKKKKKKKKK 1617
KK+KKK+K+K++ K + K+K+K KK K
Sbjct: 627 KKRKKKRKRKRRFLTKIEGVKKEKRKDKKLK 657
Score = 34.6 bits (80), Expect = 0.51
Identities = 15/35 (42%), Positives = 24/35 (68%)
Query: 1580 GEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKK 1614
G+ KK+KKK+K+K++ K + KK+ +K KK K
Sbjct: 623 GDGIKKRKKKRKRKRRFLTKIEGVKKEKRKDKKLK 657
Score = 34.6 bits (80), Expect = 0.57
Identities = 18/76 (23%), Positives = 24/76 (31%)
Query: 1574 ARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
+ + + KKK K K K K K KK KKK+K ++ K
Sbjct: 504 GKSAKKQDSKKKSSSKLDKAANKISKAAVKVKKKKKKEKSIDLDDDLIDEEDSIKLDVDD 563
Query: 1634 YSREGGGGGEKELVQK 1649
E QK
Sbjct: 564 EEDEDDEELPFLFKQK 579
Score = 33.9 bits (78), Expect = 0.83
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 1585 KKKKKKKKKKKKKKKKKKKKKKYKKKKKKKK 1615
KK+KKK+K+K++ K + KK K+K KK K
Sbjct: 627 KKRKKKRKRKRRFLTKIEGVKKEKRKDKKLK 657
Score = 33.9 bits (78), Expect = 0.84
Identities = 17/59 (28%), Positives = 36/59 (61%)
Query: 1575 RREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
RR+ E +K+ + KK KK+ K + K+KK+ ++++ + +++ K +K K K+ +K
Sbjct: 422 RRKFGPENGEKEAESKKLKKENKNEFKEKKESDEEEELEDEEEAKVEKVANKLLKRSEK 480
Score = 33.5 bits (77), Expect = 1.1
Identities = 14/31 (45%), Positives = 22/31 (70%)
Query: 1586 KKKKKKKKKKKKKKKKKKKKKYKKKKKKKKK 1616
KK+KKK+K+K++ K + K +K+K KK K
Sbjct: 627 KKRKKKRKRKRRFLTKIEGVKKEKRKDKKLK 657
Score = 33.5 bits (77), Expect = 1.3
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 1605 KKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSR 1636
KK KKK+K+K++ K + KK+K+K KK
Sbjct: 627 KKRKKKRKRKRRFLTKIEGVKKEKRKDKKLKN 658
Score = 33.1 bits (76), Expect = 1.4
Identities = 15/63 (23%), Positives = 33/63 (52%)
Query: 1571 DLLARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKK 1630
L E E++ ++ KK ++K + +K+ KK KK+ K + K+KK+ ++++
Sbjct: 399 RELEGEEESDEEENEEPSKKNVGRRKFGPENGEKEAESKKLKKENKNEFKEKKESDEEEE 458
Query: 1631 KKK 1633
+
Sbjct: 459 LED 461
Score = 32.3 bits (74), Expect = 2.4
Identities = 13/34 (38%), Positives = 23/34 (67%)
Query: 1577 EGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKK 1610
+G ++KKK+K+K++ K + KK+K+K K K
Sbjct: 624 DGIKKRKKKRKRKRRFLTKIEGVKKEKRKDKKLK 657
Score = 31.2 bits (71), Expect = 6.4
Identities = 17/72 (23%), Positives = 36/72 (50%), Gaps = 6/72 (8%)
Query: 1581 EKKKKKKKK------KKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKY 1634
KK ++K +K+ + KK KK+ K + +KK+ ++++ + +++ K +K K
Sbjct: 416 SKKNVGRRKFGPENGEKEAESKKLKKENKNEFKEKKESDEEEELEDEEEAKVEKVANKLL 475
Query: 1635 SREGGGGGEKEL 1646
R E+E
Sbjct: 476 KRSEKAQKEEEE 487
>gnl|CDD|240317 PTZ00217, PTZ00217, flap endonuclease-1; Provisional.
Length = 393
Score = 43.1 bits (102), Expect = 0.001
Identities = 19/44 (43%), Positives = 22/44 (50%)
Query: 1584 KKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKK 1627
KK KK K K KKKKKK K + ++ K KKK KK
Sbjct: 350 KKPIKKSNSKAKLKKKKKKAGASAVPKSETSQEAKSSGKKKVKK 393
Score = 42.7 bits (101), Expect = 0.001
Identities = 19/47 (40%), Positives = 22/47 (46%)
Query: 1584 KKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKK 1630
KK KK K K KKKKKK K + ++ K KKK KK
Sbjct: 347 TATKKPIKKSNSKAKLKKKKKKAGASAVPKSETSQEAKSSGKKKVKK 393
Score = 42.3 bits (100), Expect = 0.002
Identities = 23/63 (36%), Positives = 26/63 (41%), Gaps = 12/63 (19%)
Query: 1582 KKKKKKK------------KKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKK 1629
KK K KK KK KK K K KKKKK K + ++ K KKK
Sbjct: 331 KKAKTKKTQTRLDSFFTATKKPIKKSNSKAKLKKKKKKAGASAVPKSETSQEAKSSGKKK 390
Query: 1630 KKK 1632
KK
Sbjct: 391 VKK 393
Score = 40.8 bits (96), Expect = 0.006
Identities = 26/71 (36%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Query: 1577 EGRGEKKKKKKKKKKKKKKKKKKKK--KKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKY 1634
E R EK ++ KK K KK + + KK KK K K KKKKKK K +
Sbjct: 320 EERVEKYIERLKKAKTKKTQTRLDSFFTATKKPIKKSNSKAKLKKKKKKAGASAVPKSET 379
Query: 1635 SREGGGGGEKE 1645
S+E G+K+
Sbjct: 380 SQEAKSSGKKK 390
Score = 40.4 bits (95), Expect = 0.007
Identities = 23/65 (35%), Positives = 27/65 (41%), Gaps = 12/65 (18%)
Query: 1581 EKKKKKKKKK------------KKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKK 1628
E+ KK K KK KK KK K K KKK KK K + ++ K
Sbjct: 328 ERLKKAKTKKTQTRLDSFFTATKKPIKKSNSKAKLKKKKKKAGASAVPKSETSQEAKSSG 387
Query: 1629 KKKKK 1633
KKK K
Sbjct: 388 KKKVK 392
Score = 38.1 bits (89), Expect = 0.039
Identities = 17/43 (39%), Positives = 21/43 (48%)
Query: 1579 RGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKK 1621
+ KK K K KKKKKK K + ++ K KKK KK
Sbjct: 351 KPIKKSNSKAKLKKKKKKAGASAVPKSETSQEAKSSGKKKVKK 393
Score = 37.7 bits (88), Expect = 0.046
Identities = 17/42 (40%), Positives = 19/42 (45%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKK 1622
KK K K KKKKKK K ++ K KKK KK
Sbjct: 352 PIKKSNSKAKLKKKKKKAGASAVPKSETSQEAKSSGKKKVKK 393
Score = 31.1 bits (71), Expect = 5.3
Identities = 13/38 (34%), Positives = 18/38 (47%)
Query: 1576 REGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKK 1613
+ + KKKKKK K + ++ K KKK KK
Sbjct: 356 SNSKAKLKKKKKKAGASAVPKSETSQEAKSSGKKKVKK 393
>gnl|CDD|235971 PRK07219, PRK07219, DNA topoisomerase I; Validated.
Length = 822
Score = 43.5 bits (103), Expect = 0.001
Identities = 9/58 (15%), Positives = 16/58 (27%)
Query: 1576 REGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
+KK+K+ K + + K K +K K + K
Sbjct: 763 NYTEKQKKEKESKSELEALKGVGAKTAEKLKDAGVETVTDLTAADPDAVAAKVDGVSA 820
Score = 43.5 bits (103), Expect = 0.001
Identities = 14/75 (18%), Positives = 23/75 (30%), Gaps = 12/75 (16%)
Query: 1571 DLLARREGRGE------------KKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKK 1618
LL + G G+ +K+KK+K+ K + + K K K K +
Sbjct: 742 PLLRVKGGFGDELGCCNNPKCNYTEKQKKEKESKSELEALKGVGAKTAEKLKDAGVETVT 801
Query: 1619 KKKKKKKKKKKKKKK 1633
K
Sbjct: 802 DLTAADPDAVAAKVD 816
Score = 40.4 bits (95), Expect = 0.008
Identities = 8/58 (13%), Positives = 17/58 (29%)
Query: 1576 REGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
E + ++K+ K + + K K +K K + K +
Sbjct: 765 TEKQKKEKESKSELEALKGVGAKTAEKLKDAGVETVTDLTAADPDAVAAKVDGVSADR 822
Score = 38.1 bits (89), Expect = 0.045
Identities = 13/65 (20%), Positives = 24/65 (36%)
Query: 1573 LARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKK 1632
L R +G + K +K+KK+K+ K + K K +K K +
Sbjct: 743 LLRVKGGFGDELGCCNNPKCNYTEKQKKEKESKSELEALKGVGAKTAEKLKDAGVETVTD 802
Query: 1633 KYSRE 1637
+ +
Sbjct: 803 LTAAD 807
Score = 37.3 bits (87), Expect = 0.090
Identities = 6/54 (11%), Positives = 14/54 (25%)
Query: 1575 RREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKK 1628
++E + + + K K +K K + K +
Sbjct: 769 KKEKESKSELEALKGVGAKTAEKLKDAGVETVTDLTAADPDAVAAKVDGVSADR 822
Score = 33.8 bits (78), Expect = 0.97
Identities = 5/50 (10%), Positives = 9/50 (18%)
Query: 1574 ARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKK 1623
+ K K +K K + K +
Sbjct: 773 ESKSELEALKGVGAKTAEKLKDAGVETVTDLTAADPDAVAAKVDGVSADR 822
>gnl|CDD|237855 PRK14900, valS, valyl-tRNA synthetase; Provisional.
Length = 1052
Score = 43.4 bits (102), Expect = 0.001
Identities = 25/67 (37%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
Query: 1574 ARREGRGEKKKKKKKKKKKKKKKK--KKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKK 1631
A +KK KK KK KK KK KKK KK KK +K KK KK +
Sbjct: 986 AATRAAMKKKVAKKAPAKKAAAKKAAAKKAAAKKKVAKKAPAKKVARKPAAKKAAKKPAR 1045
Query: 1632 KKYSREG 1638
K R+
Sbjct: 1046 KAAGRKA 1052
Score = 40.4 bits (94), Expect = 0.009
Identities = 25/57 (43%), Positives = 28/57 (49%)
Query: 1584 KKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGG 1640
KKK KK KK KK KK KKK KK KK +K KK KK +R+ G
Sbjct: 993 KKKVAKKAPAKKAAAKKAAAKKAAAKKKVAKKAPAKKVARKPAAKKAAKKPARKAAG 1049
Score = 40.0 bits (93), Expect = 0.015
Identities = 24/91 (26%), Positives = 37/91 (40%)
Query: 1548 GKIPQAWASKSYPSLKPLGSYIVDLLARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKY 1607
+ Q A+ ++ + + + R + + KKK KK KK KK
Sbjct: 953 SEAAQQAATAVASGIEKVAEAVRKTVRRSVKKAAATRAAMKKKVAKKAPAKKAAAKKAAA 1012
Query: 1608 KKKKKKKKKKKKKKKKKKKKKKKKKKYSREG 1638
KK KKK KK KK +K KK +++
Sbjct: 1013 KKAAAKKKVAKKAPAKKVARKPAAKKAAKKP 1043
Score = 38.8 bits (90), Expect = 0.028
Identities = 25/61 (40%), Positives = 27/61 (44%)
Query: 1579 RGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREG 1638
R KKK KK KK KK KK KKK KK KK +K KK KK +
Sbjct: 989 RAAMKKKVAKKAPAKKAAAKKAAAKKAAAKKKVAKKAPAKKVARKPAAKKAAKKPARKAA 1048
Query: 1639 G 1639
G
Sbjct: 1049 G 1049
Score = 31.1 bits (70), Expect = 7.4
Identities = 17/67 (25%), Positives = 25/67 (37%)
Query: 1583 KKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGGGG 1642
+ +K ++ KK + KK KK KK KK KK KKK +
Sbjct: 971 AEAVRKTVRRSVKKAAATRAAMKKKVAKKAPAKKAAAKKAAAKKAAAKKKVAKKAPAKKV 1030
Query: 1643 EKELVQK 1649
++ K
Sbjct: 1031 ARKPAAK 1037
>gnl|CDD|235370 PRK05244, PRK05244, Der GTPase activator; Provisional.
Length = 177
Score = 41.4 bits (98), Expect = 0.001
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 14/67 (20%)
Query: 1586 KKKKKKKKKKKKKKKKKKKKKYK-----KKKKKKKKKKKKK---------KKKKKKKKKK 1631
KKKK K+ K K KKK + + +++K+KKK K K + K K + +
Sbjct: 1 KKKKSSPKRSKGMAKSKKKTREELDAEARERKRKKKHKGLKSGSRHNEGNTQSKGKGQAQ 60
Query: 1632 KKYSREG 1638
KK R G
Sbjct: 61 KKDPRIG 67
Score = 39.5 bits (93), Expect = 0.005
Identities = 30/95 (31%), Positives = 38/95 (40%), Gaps = 39/95 (41%)
Query: 1582 KKKKKKKKKKKKKKKKK---------KKKKKKKKYK---------------KKKKKKKKK 1617
KK K+ K K KKK +++K+KKK+K K K + +KK
Sbjct: 3 KKSSPKRSKGMAKSKKKTREELDAEARERKRKKKHKGLKSGSRHNEGNTQSKGKGQAQKK 62
Query: 1618 ------KKK---------KKKKKKKKKKKKKYSRE 1637
KK K KKKK K KK K S E
Sbjct: 63 DPRIGSKKPIPLGVEEKVKPKKKKPKSKKPKLSPE 97
Score = 37.2 bits (87), Expect = 0.025
Identities = 19/53 (35%), Positives = 29/53 (54%)
Query: 1592 KKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGGGGEK 1644
KKKK K+ K K KKK +++ + +++K+KKK K K SR G +
Sbjct: 1 KKKKSSPKRSKGMAKSKKKTREELDAEARERKRKKKHKGLKSGSRHNEGNTQS 53
>gnl|CDD|240578 cd12951, RRP7_Rrp7A, RRP7 domain ribosomal RNA-processing protein 7
homolog A (Rrp7A) and similar proteins. The family
corresponds to the RRP7 domain of Rrp7A, also termed
gastric cancer antigen Zg14, and similar proteins which
are yeast ribosomal RNA-processing protein 7 (Rrp7p)
homologs mainly found in Metazoans. The cellular function
of Rrp7A remains unclear currently. Rrp7A harbors an
N-terminal RNA recognition motif (RRM), also termed RBD
(RNA binding domain) or RNP (ribonucleoprotein domain),
and a C-terminal RRP7 domain.
Length = 129
Score = 40.3 bits (95), Expect = 0.001
Identities = 19/62 (30%), Positives = 37/62 (59%), Gaps = 7/62 (11%)
Query: 1581 EKKKKKKKKKKKKKKKKK-------KKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
+K+++++K++K+K+ + KK ++ K +K+ K +K+KKKKKKK+ K
Sbjct: 31 DKEEEEEKEEKEKEAEPDEDGWVTVTKKGRRPKTARKESVAAKAAEKEKKKKKKKELKNF 90
Query: 1634 YS 1635
Y
Sbjct: 91 YR 92
Score = 33.4 bits (77), Expect = 0.31
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 8/69 (11%)
Query: 1574 ARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKK----KKK----KKKK 1625
R + +K+ K +K+KKKKKKK+ K Y+ + ++ K+ + +KK KK+
Sbjct: 58 KGRRPKTARKESVAAKAAEKEKKKKKKKELKNFYRFQIRESKRNELAELRKKFEEDKKRI 117
Query: 1626 KKKKKKKKY 1634
K +K+
Sbjct: 118 ALLKAARKF 126
Score = 32.3 bits (74), Expect = 0.66
Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 12/73 (16%)
Query: 1574 ARREGRGEKKKKKKKKKKKKKKKKKKKKKKKK---KYKKKKKKKKK-----KK----KKK 1621
+ +K+ K +K+KKKKKKK+ K +++ ++ K+ + KK KK+
Sbjct: 57 KKGRRPKTARKESVAAKAAEKEKKKKKKKELKNFYRFQIRESKRNELAELRKKFEEDKKR 116
Query: 1622 KKKKKKKKKKKKY 1634
K +K K Y
Sbjct: 117 IALLKAARKFKPY 129
Score = 29.9 bits (68), Expect = 4.2
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 12/64 (18%)
Query: 1573 LARREGRGEKKKKKKKKKKKKKKKK-------KKKKKKK-----KKYKKKKKKKKKKKKK 1620
AR+E K +K+KKKKKKK+ K ++ K+ + KK+++ KK+ K
Sbjct: 64 TARKESVAAKAAEKEKKKKKKKELKNFYRFQIRESKRNELAELRKKFEEDKKRIALLKAA 123
Query: 1621 KKKK 1624
+K K
Sbjct: 124 RKFK 127
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common
bacterial type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. This family
represents the SMC protein of most bacteria. The smc
gene is often associated with scpB (TIGR00281) and scpA
genes, where scp stands for segregation and condensation
protein. SMC was shown (in Caulobacter crescentus) to be
induced early in S phase but present and bound to DNA
throughout the cell cycle [Cellular processes, Cell
division, DNA metabolism, Chromosome-associated
proteins].
Length = 1179
Score = 43.5 bits (103), Expect = 0.001
Identities = 21/90 (23%), Positives = 37/90 (41%)
Query: 759 KAKLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKL 818
+ KL E + + +L A+L + +L+ L ++L +LE QI ++
Sbjct: 343 EEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEI 402
Query: 819 ERAEKLIGGLGGEKTRWSEASANLSKALVN 848
ER E + L + R + L K L
Sbjct: 403 ERLEARLERLEDRRERLQQEIEELLKKLEE 432
Score = 39.7 bits (93), Expect = 0.015
Identities = 19/89 (21%), Positives = 42/89 (47%)
Query: 758 KKAKLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQK 817
+ +++E E + ++L + +++ + + Q LR+ LA + +ELE Q+E + K
Sbjct: 272 LRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESK 331
Query: 818 LERAEKLIGGLGGEKTRWSEASANLSKAL 846
L+ + + L + E +L L
Sbjct: 332 LDELAEELAELEEKLEELKEELESLEAEL 360
Score = 38.1 bits (89), Expect = 0.044
Identities = 27/95 (28%), Positives = 43/95 (45%), Gaps = 15/95 (15%)
Query: 758 KKAKLAEAEADYAVQMEKLNSK----RAQLATVLGKLQALRDELAQKSKDKKELEDQIEL 813
++ ++ E E ++E+L K LA + +L+ L +EL Q K+ +EL QI
Sbjct: 675 RRREIEELEE----KIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISA 730
Query: 814 CKQKLERAEKLIGGLGGEKTRWSEASANLSKALVN 848
++ L R E E + E A LSK L
Sbjct: 731 LRKDLARLEA-------EVEQLEERIAQLSKELTE 758
Score = 35.0 bits (81), Expect = 0.37
Identities = 17/66 (25%), Positives = 34/66 (51%)
Query: 760 AKLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKLE 819
A+L E E+ E+L +L + +L++L EL + + +ELE ++E +++LE
Sbjct: 323 AQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLE 382
Query: 820 RAEKLI 825
+
Sbjct: 383 TLRSKV 388
Score = 33.9 bits (78), Expect = 1.0
Identities = 19/103 (18%), Positives = 42/103 (40%), Gaps = 14/103 (13%)
Query: 758 KKAKLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSK--------------D 803
+ +L E + + E+L A+L + KL+ LR E+++ + +
Sbjct: 237 LREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANE 296
Query: 804 KKELEDQIELCKQKLERAEKLIGGLGGEKTRWSEASANLSKAL 846
LE Q ++ +++L E+ + L + L++ L
Sbjct: 297 ISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEEL 339
Score = 31.6 bits (72), Expect = 5.4
Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Query: 758 KKAKLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQK 817
KA+L E E V +L R +L + +L+ +EL + + + +ELE+++E + +
Sbjct: 218 LKAELRELELALLVL--RLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLE 275
Query: 818 LERAEKLIGGLGGE 831
+ E+ I L E
Sbjct: 276 VSELEEEIEELQKE 289
Score = 31.2 bits (71), Expect = 6.1
Identities = 15/58 (25%), Positives = 21/58 (36%)
Query: 755 VGPKKAKLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIE 812
+ + +L E + + E L R +L L A ELAQ LE E
Sbjct: 442 LEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQE 499
Score = 30.8 bits (70), Expect = 7.4
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 7/73 (9%)
Query: 758 KKAKLAEAE---ADYAVQMEKLNSKRAQL----ATVLGKLQALRDELAQKSKDKKELEDQ 810
+A+L E E + Q+E L SK AQL A++ +++ L L + ++ L+ +
Sbjct: 363 LEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQE 422
Query: 811 IELCKQKLERAEK 823
IE +KLE AE
Sbjct: 423 IEELLKKLEEAEL 435
>gnl|CDD|219882 pfam08524, rRNA_processing, rRNA processing. This is a family of
proteins that are involved in rRNA processing. In a
localisation study they were found to localise to the
nucleus and nucleolus. The family also includes other
metazoa members from plants to mammals where the protein
has been named BR22 and is associated with TTF-1, thyroid
transcription factor 1. In the lungs, the family binds
TTF-1 to form a complex which influences the expression
of the key lung surfactant protein-B (SP-B) and -C
(SP-C), the small hydrophobic surfactant proteins that
maintain surface tension in alveoli.
Length = 150
Score = 41.0 bits (96), Expect = 0.001
Identities = 20/61 (32%), Positives = 45/61 (73%), Gaps = 1/61 (1%)
Query: 1579 RGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKK-KKKKKKKKKKKKKKKKKKKYSRE 1637
+ EKKKK +KK+ K++K+++++K+ ++K+ +K + KKK+K++++++KK K ++
Sbjct: 67 KFEKKKKLDEKKEIAKQRKREQREKELAKRQKELEKIELSKKKQKERERRRKKLTKKTKS 126
Query: 1638 G 1638
G
Sbjct: 127 G 127
Score = 38.3 bits (89), Expect = 0.009
Identities = 19/58 (32%), Positives = 39/58 (67%)
Query: 1576 REGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
+E ++ K K+ +K +KKKK +KK+ K +K+++++K+ K++K+ +K + KKK
Sbjct: 52 KESAEKQVKSSKEDRKFEKKKKLDEKKEIAKQRKREQREKELAKRQKELEKIELSKKK 109
Score = 37.9 bits (88), Expect = 0.011
Identities = 18/59 (30%), Positives = 40/59 (67%)
Query: 1575 RREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
+EG +K+ +K+ K K+ +K +KKKK +KK+ K++K+++++K+ K++K+ +
Sbjct: 43 EKEGYAVPEKESAEKQVKSSKEDRKFEKKKKLDEKKEIAKQRKREQREKELAKRQKELE 101
Score = 37.2 bits (86), Expect = 0.019
Identities = 16/52 (30%), Positives = 37/52 (71%)
Query: 1576 REGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKK 1627
E + K++K+++++K+ K++K+ +K + KKK+K++++++KK KK K
Sbjct: 75 DEKKEIAKQRKREQREKELAKRQKELEKIELSKKKQKERERRRKKLTKKTKS 126
Score = 36.8 bits (85), Expect = 0.029
Identities = 24/78 (30%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Query: 1559 YPSLKPLGSYIVDLLARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKK 1618
L+ G Y V E + + K+ +K +KKKK +KK+ K++K ++++K+ K++
Sbjct: 39 LKLLEKEG-YAVPEKESAEKQVKSSKEDRKFEKKKKLDEKKEIAKQRKREQREKELAKRQ 97
Query: 1619 KKKKKKKKKKKKKKKYSR 1636
K+ +K + KKK+K+ R
Sbjct: 98 KELEKIELSKKKQKERER 115
Score = 36.0 bits (83), Expect = 0.045
Identities = 19/54 (35%), Positives = 39/54 (72%)
Query: 1583 KKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSR 1636
K+ +K +KKKK +KK+ K++K+ +++K+ K++K+ +K + KKK+K++ R
Sbjct: 63 KEDRKFEKKKKLDEKKEIAKQRKREQREKELAKRQKELEKIELSKKKQKERERR 116
Score = 33.7 bits (77), Expect = 0.35
Identities = 18/57 (31%), Positives = 36/57 (63%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSRE 1637
EK+ +K+ +K+ K K+ +K KKKK +KK+ K++K+++++K+ K +E
Sbjct: 43 EKEGYAVPEKESAEKQVKSSKEDRKFEKKKKLDEKKEIAKQRKREQREKELAKRQKE 99
Score = 32.5 bits (74), Expect = 0.82
Identities = 14/50 (28%), Positives = 36/50 (72%)
Query: 1575 RREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKK 1624
++E ++K+++++K+ K++K+ +K + KK +K++++++KK KK K
Sbjct: 77 KKEIAKQRKREQREKELAKRQKELEKIELSKKKQKERERRRKKLTKKTKS 126
Score = 31.4 bits (71), Expect = 1.7
Identities = 14/51 (27%), Positives = 32/51 (62%)
Query: 1571 DLLARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKK 1621
+ + R ++++K+ K++K+ +K + KKK+K +++++KK KK K
Sbjct: 76 EKKEIAKQRKREQREKELAKRQKELEKIELSKKKQKERERRRKKLTKKTKS 126
Score = 31.0 bits (70), Expect = 2.6
Identities = 17/56 (30%), Positives = 29/56 (51%)
Query: 1595 KKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGGGGEKELVQKN 1650
+ +KK KK+ ++ K K+ ++ KK + KK+ K +EG EKE +K
Sbjct: 3 SVDQNQKKNGKKFTREYKVKEIQRNLTKKARLKKEYLKLLEKEGYAVPEKESAEKQ 58
>gnl|CDD|221275 pfam11861, DUF3381, Domain of unknown function (DUF3381). This
domain is functionally uncharacterized. This domain is
found in eukaryotes. This presumed domain is typically
between 156 to 174 amino acids in length. This domain is
found associated with pfam07780, pfam01728.
Length = 154
Score = 40.7 bits (96), Expect = 0.001
Identities = 12/58 (20%), Positives = 39/58 (67%)
Query: 1576 REGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
R+ G KK+K+++++++ + ++ ++++ +K+ K K++K+++ ++K+K+ K
Sbjct: 91 RKLLGLDKKEKEEEEEEEVEVEELDEEEQIDELLEKELAKLKREKRRENERKQKEILK 148
Score = 40.0 bits (94), Expect = 0.003
Identities = 11/63 (17%), Positives = 42/63 (66%), Gaps = 1/63 (1%)
Query: 1572 LLARRE-GRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKK 1630
R+ G +K+K+++++++ + ++ ++++ + +K+ K K++K+++ ++K+K+
Sbjct: 88 KKVRKLLGLDKKEKEEEEEEEVEVEELDEEEQIDELLEKELAKLKREKRRENERKQKEIL 147
Query: 1631 KKK 1633
K++
Sbjct: 148 KEQ 150
Score = 38.8 bits (91), Expect = 0.006
Identities = 12/63 (19%), Positives = 41/63 (65%)
Query: 1575 RREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKY 1634
R++ R KK+K+++++++ + ++ +++ + +K+ K K++K+++ ++K+K+
Sbjct: 87 RKKVRKLLGLDKKEKEEEEEEEVEVEELDEEEQIDELLEKELAKLKREKRRENERKQKEI 146
Query: 1635 SRE 1637
+E
Sbjct: 147 LKE 149
Score = 31.1 bits (71), Expect = 2.3
Identities = 8/32 (25%), Positives = 23/32 (71%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKK 1612
++ +K+ K K++K+++ ++K+K+ K++ K
Sbjct: 121 DELLEKELAKLKREKRRENERKQKEILKEQMK 152
Score = 29.6 bits (67), Expect = 8.3
Identities = 12/62 (19%), Positives = 39/62 (62%)
Query: 1572 LLARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKK 1631
+L +++ + K +KK +K KK+K+++++++ + ++ ++++ + +K+ K K+
Sbjct: 74 VLGKKDFKKLLKWRKKVRKLLGLDKKEKEEEEEEEVEVEELDEEEQIDELLEKELAKLKR 133
Query: 1632 KK 1633
+K
Sbjct: 134 EK 135
Score = 29.2 bits (66), Expect = 9.5
Identities = 8/27 (29%), Positives = 19/27 (70%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKY 1607
E K K++K+++ ++K+K+ K++ K
Sbjct: 127 ELAKLKREKRRENERKQKEILKEQMKM 153
>gnl|CDD|187751 cd09270, RNase_H2-B, Ribonuclease H2-B is a subunit of the eukaryotic
RNase H complex which cleaves RNA-DNA hybrids.
Ribonuclease H2B is one of the three proteins of
eukaryotic RNase H2 complex that is required for nucleic
acid binding and hydrolysis. RNase H is classified into
two families, type I (prokaryotic RNase HI, eukaryotic
RNase H1 and viral RNase H) and type II (prokaryotic
RNase HII and HIII, and eukaryotic RNase H2/HII). RNase H
endonucleolytically hydrolyzes an RNA strand when it is
annealed to a complementary DNA strand in the presence of
divalent cations, in DNA replication and repair. The
enzyme can be found in bacteria, archaea, and eukaryotes.
Most prokaryotic and eukaryotic genomes contain multiple
RNase H genes. Despite a lack of evidence for homology
from sequence comparisons, type I and type II RNase H
share a common fold and similar steric configurations of
the four acidic active-site residues, suggesting
identical or very similar catalytic mechanisms.
Eukaryotic RNase HII is active during replication and is
believed to play a role in removal of Okazaki fragment
primers and single ribonucleotides in DNA-DNA duplexes.
Eukaryotic RNase HII is functional when it forms a
complex with RNase H2B and RNase H2C proteins. It is
speculated that the two accessory subunits are required
for correct folding of the catalytic subunit of RNase
HII. Mutations in the three subunits of human RNase HII
cause neurological disorder.
Length = 211
Score = 41.9 bits (99), Expect = 0.001
Identities = 23/56 (41%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 1582 KKKKKKKKKK----KKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
KK ++ KKK K+ + + KKK ++KKKKKKK KKKK KK K
Sbjct: 150 LKKVERLKKKELDIKEAEAARDKKKSNNAEEEKKKKKKKSAKKKKLKKVAAVGMKA 205
Score = 40.0 bits (94), Expect = 0.005
Identities = 20/54 (37%), Positives = 30/54 (55%)
Query: 1569 IVDLLARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKK 1622
V+ L ++E ++ + + KKK +++KKKKKKK KKKK KK K
Sbjct: 152 KVERLKKKELDIKEAEAARDKKKSNNAEEEKKKKKKKSAKKKKLKKVAAVGMKA 205
Score = 38.8 bits (91), Expect = 0.010
Identities = 21/52 (40%), Positives = 30/52 (57%)
Query: 1584 KKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYS 1635
KK ++ KKK+ K+ + + K K +++KKKKKKK KKKK KK
Sbjct: 150 LKKVERLKKKELDIKEAEAARDKKKSNNAEEEKKKKKKKSAKKKKLKKVAAV 201
Score = 38.8 bits (91), Expect = 0.011
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 9/67 (13%)
Query: 1569 IVDLLARREGRGEKKKKKKKKK---KKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKK 1625
++ L + K ++ KKK+ K+ + + KKK + +KKKKKKK KKKK KK
Sbjct: 145 LLAWLLK------KVERLKKKELDIKEAEAARDKKKSNNAEEEKKKKKKKSAKKKKLKKV 198
Query: 1626 KKKKKKK 1632
K
Sbjct: 199 AAVGMKA 205
Score = 36.5 bits (85), Expect = 0.058
Identities = 23/53 (43%), Positives = 33/53 (62%)
Query: 1586 KKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREG 1638
KK ++ KKK+ K+ + + KKK +++KKKKKKK KKKK KK + G
Sbjct: 150 LKKVERLKKKELDIKEAEAARDKKKSNNAEEEKKKKKKKSAKKKKLKKVAAVG 202
Score = 35.4 bits (82), Expect = 0.17
Identities = 21/57 (36%), Positives = 32/57 (56%)
Query: 1590 KKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGGGGEKEL 1646
KK ++ KKK+ K+ + KKK +++KKKKKKK KKK ++ G K +
Sbjct: 150 LKKVERLKKKELDIKEAEAARDKKKSNNAEEEKKKKKKKSAKKKKLKKVAAVGMKAI 206
>gnl|CDD|216985 pfam02349, MSG, Major surface glycoprotein. This is a novel repeat
in Pneumocystis carinii Major surface glycoprotein (MSG)
some members of the alignment have up to nine repeats of
this family, the repeats containing several conserved
cysteines. The MSG of P. carinii is an important protein
in host-pathogen interactions. Surface glycoprotein A
from Pneumocystis carinii is a main target for the host
immune system, this protein is implicated in the
attachment of Pneumocystis carinii to the host alveolar
epithelial cells, alveolar macrophages, host surfactant
and possibly accounts in part for the hypoxia seen in
Pneumocystis carinii pneumonia (PCP).
Length = 81
Score = 39.0 bits (91), Expect = 0.001
Identities = 22/56 (39%), Positives = 30/56 (53%)
Query: 1583 KKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREG 1638
K+K +K K+K K KK K + K+ K + KKKKK KK K+K K +E
Sbjct: 24 PLLKEKCEKLKEKCYKLKKDLKLEELLLKELKGELKKKKKCKKALKEKCTKLKKES 79
Score = 39.0 bits (91), Expect = 0.001
Identities = 25/57 (43%), Positives = 33/57 (57%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSRE 1637
K+K +K K+K K KK K ++ K+ K + KKKKK KK K+K K KK S E
Sbjct: 25 LLKEKCEKLKEKCYKLKKDLKLEELLLKELKGELKKKKKCKKALKEKCTKLKKESNE 81
Score = 31.3 bits (71), Expect = 0.65
Identities = 17/48 (35%), Positives = 26/48 (54%)
Query: 1576 REGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKK 1623
+E + KK K ++ K+ K + KKKKK K K+K K KK+ +
Sbjct: 34 KEKCYKLKKDLKLEELLLKELKGELKKKKKCKKALKEKCTKLKKESNE 81
Score = 31.3 bits (71), Expect = 0.69
Identities = 19/56 (33%), Positives = 29/56 (51%)
Query: 1579 RGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKY 1634
E + ++ K+K +K K+K K KK K ++ K+ K + KKKKK KK
Sbjct: 12 LEEYCEFLEEACPLLKEKCEKLKEKCYKLKKDLKLEELLLKELKGELKKKKKCKKA 67
Score = 29.3 bits (66), Expect = 3.3
Identities = 16/61 (26%), Positives = 32/61 (52%)
Query: 1585 KKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGGGGEK 1644
K K ++K K+ ++ + ++ K+K +K K+K K KK K ++ +E G +K
Sbjct: 1 KDFKLEEKCKELEEYCEFLEEACPLLKEKCEKLKEKCYKLKKDLKLEELLLKELKGELKK 60
Query: 1645 E 1645
+
Sbjct: 61 K 61
Score = 28.6 bits (64), Expect = 6.5
Identities = 13/53 (24%), Positives = 28/53 (52%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
+ ++K K+ ++ + ++ K+K +K K+K K KK K ++ K+ K
Sbjct: 4 KLEEKCKELEEYCEFLEEACPLLKEKCEKLKEKCYKLKKDLKLEELLLKELKG 56
>gnl|CDD|220207 pfam09368, Sas10_Utp3_C, Sas10 C-terminal domain. This family
contains a C-terminal presumed domain in Sas10 which hash
been identified as a regulator of chromatin silencing.
Length = 76
Score = 38.8 bits (91), Expect = 0.001
Identities = 18/74 (24%), Positives = 36/74 (48%), Gaps = 5/74 (6%)
Query: 1577 EGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSR 1636
K+K + +K K +K+KK ++ KK+KK +K K+ K +++ +++
Sbjct: 1 VEEDGKRKISYQIEKNKGLTRKRKKDRRNPRVKKRKKYEKAVKRLKSQRRVVREEDGGY- 59
Query: 1637 EGGGGGEKELVQKN 1650
GGE ++ N
Sbjct: 60 ----GGETTGIKTN 69
Score = 35.7 bits (83), Expect = 0.013
Identities = 13/58 (22%), Positives = 29/58 (50%)
Query: 1579 RGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSR 1636
+G +K+KK ++ + KK+KK +K K+ K +++ +++ + K S
Sbjct: 17 KGLTRKRKKDRRNPRVKKRKKYEKAVKRLKSQRRVVREEDGGYGGETTGIKTNVVRSV 74
Score = 31.8 bits (73), Expect = 0.33
Identities = 12/59 (20%), Positives = 24/59 (40%), Gaps = 6/59 (10%)
Query: 1572 LLARREGRGEKKKKKKKKKKKKKKKKKKK------KKKKKKYKKKKKKKKKKKKKKKKK 1624
L R+ + + + KK+KK +K K+ K +++ Y + K + K
Sbjct: 18 GLTRKRKKDRRNPRVKKRKKYEKAVKRLKSQRRVVREEDGGYGGETTGIKTNVVRSVKL 76
>gnl|CDD|220818 pfam10595, UPF0564, Uncharacterized protein family UPF0564. This
family of proteins has no known function. However, one of
the members is annotated as an EF-hand family protein.
Length = 349
Score = 42.5 bits (100), Expect = 0.001
Identities = 22/72 (30%), Positives = 48/72 (66%), Gaps = 8/72 (11%)
Query: 1574 ARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKK--------KKKKKKKKKKKKKKKK 1625
R R EK+ K++++KK+ +++KKKKK+ K K+ +K ++++K++ K +K
Sbjct: 277 FLRTERKEKEAKEQQEKKELEQRKKKKKEMAPKVKQRFEANDPAQKLQEERKEQLAKLRK 336
Query: 1626 KKKKKKKKYSRE 1637
++K+++K+Y +E
Sbjct: 337 EEKEREKEYEQE 348
Score = 37.8 bits (88), Expect = 0.037
Identities = 35/169 (20%), Positives = 68/169 (40%), Gaps = 26/169 (15%)
Query: 1494 LYNQSMNTVLKQELIRYNRLTVIIKKSLQEVRQAVKGLIVMSKELEE-------INTSIM 1546
L + + QEL++ +RL + K + R K K + SI
Sbjct: 144 LKRKIRVQMRAQELLQSSRLPPRMAKHEAQERLTKKKKRGQKKSKYKKKTFKPKRAKSIP 203
Query: 1547 -FGKIPQAW---ASKSYPSLKP------------LGSYIVDLLARREGRGEKKKKKKKKK 1590
F K+ + + ++ S +P S L GE+ K ++K
Sbjct: 204 DFEKLHEKFQKQLAEKKKSKRPTVPEPFNFQESHKSSSRTYLDQENISAGEENLKPTRRK 263
Query: 1591 KKKKKKKKK---KKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSR 1636
KK + K + ++ +K+ K++++KK+ +++KKKKK+ K +
Sbjct: 264 LPPSTKKWESLVKFLRTERKEKEAKEQQEKKELEQRKKKKKEMAPKVKQ 312
Score = 37.5 bits (87), Expect = 0.055
Identities = 15/58 (25%), Positives = 33/58 (56%)
Query: 1580 GEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSRE 1637
++ K ++K KK + K + ++K+K+ K++++KK+ +++KKKKK
Sbjct: 251 SAGEENLKPTRRKLPPSTKKWESLVKFLRTERKEKEAKEQQEKKELEQRKKKKKEMAP 308
Score = 37.1 bits (86), Expect = 0.066
Identities = 20/116 (17%), Positives = 44/116 (37%), Gaps = 14/116 (12%)
Query: 1516 IIKKSLQEVRQAVKGLIVMSKELEEINTSIMFGKIPQAWASKSYPSLKPLGSYIVDLLAR 1575
I + L+E ++ E E +P + PL +++ +
Sbjct: 24 IRQSKLEEELNKLEKKE----EEAECKKKFKANPVPAS-------VKLPLYE---EIMEQ 69
Query: 1576 REGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKK 1631
E R E+ ++K K +K +++++ K +K + +++ KK K K
Sbjct: 70 NEERREEVREKSKAILLSSQKPFSFYEREEQKKAILPRKLRSSTSEREPKKFKAKP 125
Score = 34.8 bits (80), Expect = 0.40
Identities = 15/48 (31%), Positives = 31/48 (64%)
Query: 1582 KKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKK 1629
KK + K + ++K+K+ K++ +KK+ +++KKKKK+ K K++
Sbjct: 266 PSTKKWESLVKFLRTERKEKEAKEQQEKKELEQRKKKKKEMAPKVKQR 313
Score = 33.2 bits (76), Expect = 1.1
Identities = 15/48 (31%), Positives = 31/48 (64%)
Query: 1583 KKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKK 1630
KK + K + ++K+K+ K+ ++KK+ +++KKKKK+ K K++
Sbjct: 266 PSTKKWESLVKFLRTERKEKEAKEQQEKKELEQRKKKKKEMAPKVKQR 313
Score = 33.2 bits (76), Expect = 1.1
Identities = 16/54 (29%), Positives = 32/54 (59%)
Query: 1575 RREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKK 1628
R KK + K + ++K+K+ K+++ KK+ +++KKKKK+ K K++
Sbjct: 260 TRRKLPPSTKKWESLVKFLRTERKEKEAKEQQEKKELEQRKKKKKEMAPKVKQR 313
Score = 32.8 bits (75), Expect = 1.6
Identities = 14/40 (35%), Positives = 27/40 (67%)
Query: 1588 KKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKK 1627
K++KKK++KK ++ K ++ K +KK+++ + KKK K
Sbjct: 13 KREKKKREKKSIRQSKLEEELNKLEKKEEEAECKKKFKAN 52
Score = 32.4 bits (74), Expect = 1.9
Identities = 16/54 (29%), Positives = 34/54 (62%)
Query: 1574 ARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKK 1627
RR+ KK + K + ++K+K+ K++++ K+ +++KKKKK+ K K++
Sbjct: 260 TRRKLPPSTKKWESLVKFLRTERKEKEAKEQQEKKELEQRKKKKKEMAPKVKQR 313
Score = 31.7 bits (72), Expect = 3.4
Identities = 14/38 (36%), Positives = 27/38 (71%)
Query: 1595 KKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKK 1632
K++KKK++KK + K +++ K +KK+++ + KKK K
Sbjct: 13 KREKKKREKKSIRQSKLEEELNKLEKKEEEAECKKKFK 50
Score = 30.9 bits (70), Expect = 5.9
Identities = 14/64 (21%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
Query: 1579 RGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKK-----KKKKKKKKKKKKKKKKKKKKK 1633
R E+KK +K + +++ KK K K K K K ++++ K+K + + + ++
Sbjct: 97 REEQKKAILPRKLRSSTSEREPKKFKAKPVPKSIYIPLLKDKMQEEELKRKIRVQMRAQE 156
Query: 1634 YSRE 1637
+
Sbjct: 157 LLQS 160
Score = 30.5 bits (69), Expect = 7.1
Identities = 14/40 (35%), Positives = 27/40 (67%)
Query: 1590 KKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKK 1629
K++KKK++KK ++ K ++ K +KK+++ + KKK K
Sbjct: 13 KREKKKREKKSIRQSKLEEELNKLEKKEEEAECKKKFKAN 52
Score = 30.5 bits (69), Expect = 8.2
Identities = 14/40 (35%), Positives = 28/40 (70%)
Query: 1591 KKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKK 1630
K++KKK++KK ++ K +++ K +KK+++ + KKK K
Sbjct: 13 KREKKKREKKSIRQSKLEEELNKLEKKEEEAECKKKFKAN 52
Score = 30.5 bits (69), Expect = 8.6
Identities = 13/69 (18%), Positives = 30/69 (43%)
Query: 1561 SLKPLGSYIVDLLARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKK 1620
S KP Y + + + + +++ KK K K K K K ++++ K+K
Sbjct: 88 SQKPFSFYEREEQKKAILPRKLRSSTSEREPKKFKAKPVPKSIYIPLLKDKMQEEELKRK 147
Query: 1621 KKKKKKKKK 1629
+ + + ++
Sbjct: 148 IRVQMRAQE 156
>gnl|CDD|220121 pfam09135, Alb1, Alb1. Alb1 is a nuclear shuttling factor involved
in ribosome biogenesis.
Length = 112
Score = 39.8 bits (93), Expect = 0.001
Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 5/64 (7%)
Query: 1572 LLARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYK-----KKKKKKKKKKKKKKKKKK 1626
+LA + G KKK++KKK K+ +K++K++KK + KK+ K + K K
Sbjct: 37 ILAASKNEGVSKKKQRKKKPKRLTRKQRKRQKKGLERAEIVTDTLSKKRAKSIGRAKYVK 96
Query: 1627 KKKK 1630
K+K
Sbjct: 97 KRKA 100
Score = 35.5 bits (82), Expect = 0.044
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 13/72 (18%)
Query: 1574 ARREGRGEKKKKKKKKKKKKKKKKKKKKKK-------------KKKYKKKKKKKKKKKKK 1620
A + KKK++KKK K+ +K++K++KK KK+ K + K KK+K
Sbjct: 40 ASKNEGVSKKKQRKKKPKRLTRKQRKRQKKGLERAEIVTDTLSKKRAKSIGRAKYVKKRK 99
Query: 1621 KKKKKKKKKKKK 1632
K +
Sbjct: 100 ATWDDTNAKIED 111
Score = 35.2 bits (81), Expect = 0.060
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 9/74 (12%)
Query: 1573 LARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKK---------KKKK 1623
L R + K+ K + KKK++KKK K +K++K++KK K
Sbjct: 24 LPRAKRTDRKRPGILAASKNEGVSKKKQRKKKPKRLTRKQRKRQKKGLERAEIVTDTLSK 83
Query: 1624 KKKKKKKKKKYSRE 1637
K+ K + KY ++
Sbjct: 84 KRAKSIGRAKYVKK 97
Score = 35.2 bits (81), Expect = 0.061
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
Query: 1574 ARREGRGEKKKKKKKKKKKKKKKKKKKKK-----KKKKYKKKKKKKKKKKKKKKKKKKKK 1628
ARR K + K+ +K+ K KKK++KKK K+ +K++K
Sbjct: 6 ARRAPSPSIDLDKSSLTSLPRAKRTDRKRPGILAASKNEGVSKKKQRKKKPKRLTRKQRK 65
Query: 1629 KKKKKYSR 1636
++KK R
Sbjct: 66 RQKKGLER 73
Score = 30.2 bits (68), Expect = 3.1
Identities = 14/54 (25%), Positives = 25/54 (46%)
Query: 1587 KKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGG 1640
K + K+ +K+ K + KKK++KKK K+ +K+ R+ G
Sbjct: 17 DKSSLTSLPRAKRTDRKRPGILAASKNEGVSKKKQRKKKPKRLTRKQRKRQKKG 70
>gnl|CDD|150240 pfam09495, DUF2462, Protein of unknown function (DUF2462). This
protein is highly conserved, but its function is unknown.
It can be isolated from HeLa cell nucleoli and is found
to be homologous with Leydig cell tumour protein whose
function is unknown.
Length = 82
Score = 38.9 bits (91), Expect = 0.001
Identities = 20/72 (27%), Positives = 27/72 (37%), Gaps = 11/72 (15%)
Query: 1580 GEKKKKKKKKKKKKKKKKKKK--KKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSRE 1637
G K K K K KKK+K KK + K KK + + +K KK K
Sbjct: 4 GALKVKAKGPAAVKAGKKKQKGPKKAGPRVIKPKKAQAVQAQKLKKVLTSGLNKST---- 59
Query: 1638 GGGGGEKELVQK 1649
EK + +
Sbjct: 60 -----EKLIASR 66
Score = 29.7 bits (67), Expect = 2.6
Identities = 15/52 (28%), Positives = 22/52 (42%)
Query: 1574 ARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKK 1625
A+ + KKK+K KK + K KK + +K KK K +K
Sbjct: 10 AKGPAAVKAGKKKQKGPKKAGPRVIKPKKAQAVQAQKLKKVLTSGLNKSTEK 61
>gnl|CDD|217884 pfam04086, SRP-alpha_N, Signal recognition particle, alpha subunit,
N-terminal. SRP is a complex of six distinct
polypeptides and a 7S RNA that is essential for
transferring nascent polypeptide chains that are destined
for export from the cell to the translocation apparatus
of the endoplasmic reticulum (ER) membrane. SRP binds
hydrophobic signal sequences as they emerge from the
ribosome, and arrests translation.
Length = 272
Score = 42.0 bits (99), Expect = 0.001
Identities = 17/99 (17%), Positives = 30/99 (30%), Gaps = 26/99 (26%)
Query: 1576 REGRGEKKKKKKKKKKKKKKKKKK--------------------------KKKKKKKYKK 1609
E + ++ K+K++KK ++ ++ KK K
Sbjct: 128 IERKPKEPGLKRKQRKKAQESATSPESSPSSTPNSSRPSTPHLLKAKEGPSRRAKKAAKL 187
Query: 1610 KKKKKKKKKKKKKKKKKKKKKKKKYSREGGGGGEKELVQ 1648
+K K K KK KK + G E +
Sbjct: 188 SSTASSGDEKSPKSKAAPKKAGKKMRKWDLDGDEDDDAV 226
>gnl|CDD|217756 pfam03839, Sec62, Translocation protein Sec62.
Length = 217
Score = 41.3 bits (97), Expect = 0.002
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 7/58 (12%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKK-------KKKKKKKKKKKKKKKKKKK 1631
+ K K K + K + K +K+K K KK ++KK++KKK KKKK
Sbjct: 20 KYKANKDKGNPEIYNKINSQDKAIEKFKLLIKAQMAERVKKLHSQEKKEEKKKPKKKK 77
Score = 40.2 bits (94), Expect = 0.004
Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 7/60 (11%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKK-------KKKKKKKKKKKKKKKKKKK 1633
+K K K K + K + K K K K KK ++KK++KKK KKKK
Sbjct: 18 SEKYKANKDKGNPEIYNKINSQDKAIEKFKLLIKAQMAERVKKLHSQEKKEEKKKPKKKK 77
Score = 39.4 bits (92), Expect = 0.007
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 7/60 (11%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKK-------KKKKKKKKKKKKKKKKKK 1633
E +K K K K + K + K +K K K KK ++KK++KKK KKK
Sbjct: 17 ESEKYKANKDKGNPEIYNKINSQDKAIEKFKLLIKAQMAERVKKLHSQEKKEEKKKPKKK 76
Score = 38.2 bits (89), Expect = 0.020
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 7/58 (12%)
Query: 1579 RGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKK-------KKKKKKKKKKKKKKKKKKK 1629
+ + K K + K + K +K K K KK ++KK++KKK KKKK
Sbjct: 20 KYKANKDKGNPEIYNKINSQDKAIEKFKLLIKAQMAERVKKLHSQEKKEEKKKPKKKK 77
Score = 34.0 bits (78), Expect = 0.48
Identities = 15/68 (22%), Positives = 29/68 (42%)
Query: 1582 KKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGGG 1641
K+ + + +K K K K + + K +K K K + ++ KK +S+E
Sbjct: 10 KRVVRALESEKYKANKDKGNPEIYNKINSQDKAIEKFKLLIKAQMAERVKKLHSQEKKEE 69
Query: 1642 GEKELVQK 1649
+K +K
Sbjct: 70 KKKPKKKK 77
Score = 33.2 bits (76), Expect = 0.71
Identities = 11/50 (22%), Positives = 21/50 (42%)
Query: 1583 KKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKK 1632
K++ + K+ + + +K K K K + K + K +K K K
Sbjct: 2 KRQDFFRAKRVVRALESEKYKANKDKGNPEIYNKINSQDKAIEKFKLLIK 51
Score = 32.5 bits (74), Expect = 1.2
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 8/40 (20%)
Query: 1561 SLKPLGSYIVDLLARREGRGEKKKKKKKKKKKKKKKKKKK 1600
S KPL ++ +G+K KK KK KKKKKKK+
Sbjct: 186 SFKPLYTW--------HYKGDKSSAKKDKKSKKKKKKKRS 217
Score = 31.7 bits (72), Expect = 2.2
Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Query: 1549 KIPQAWASKSYPSLKPLGSYIVDLLARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYK 1608
++ +A S+ Y + K G+ + + +K +K K K + ++ KK ++ K
Sbjct: 11 RVVRALESEKYKANKDKGN---PEIYNKINSQDKAIEKFKLLIKAQMAERVKKLHSQEKK 67
Query: 1609 KKKKKKKKKK 1618
++KKK KKKK
Sbjct: 68 EEKKKPKKKK 77
Score = 30.1 bits (68), Expect = 7.9
Identities = 11/46 (23%), Positives = 21/46 (45%)
Query: 1588 KKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
K++ + K+ + + +KYK K K + K + K +K K
Sbjct: 2 KRQDFFRAKRVVRALESEKYKANKDKGNPEIYNKINSQDKAIEKFK 47
Score = 30.1 bits (68), Expect = 8.7
Identities = 14/23 (60%), Positives = 15/23 (65%)
Query: 1607 YKKKKKKKKKKKKKKKKKKKKKK 1629
YK K KK KK KKKKKKK+
Sbjct: 195 YKGDKSSAKKDKKSKKKKKKKRS 217
Score = 29.8 bits (67), Expect = 9.0
Identities = 13/22 (59%), Positives = 14/22 (63%)
Query: 1601 KKKKKKYKKKKKKKKKKKKKKK 1622
K K KK KK KKKKKKK+
Sbjct: 196 KGDKSSAKKDKKSKKKKKKKRS 217
>gnl|CDD|115057 pfam06375, BLVR, Bovine leukaemia virus receptor (BLVR). This family
consists of several bovine specific leukaemia virus
receptors which are thought to function as transmembrane
proteins, although their exact function is unknown.
Length = 561
Score = 42.4 bits (99), Expect = 0.002
Identities = 32/117 (27%), Positives = 46/117 (39%), Gaps = 49/117 (41%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKK------------------------------- 1609
EKK KK KKK+KK+K+K++ K KKK+ +
Sbjct: 196 EKKSKKPKKKEKKEKEKERDKDKKKEVEGFKSLLLALDDSPASAASVAEADEASLANTVS 255
Query: 1610 ------------------KKKKKKKKKKKKKKKKKKKKKKKKYSREGGGGGEKELVQ 1648
KK K KKKK++K+K++KKKKKK+ + Q
Sbjct: 256 GTAPDSEPDEPKDAEAEETKKSPKHKKKKQRKEKEEKKKKKKHHHHRCHHSDGGAEQ 312
Score = 42.4 bits (99), Expect = 0.002
Identities = 28/118 (23%), Positives = 47/118 (39%), Gaps = 49/118 (41%)
Query: 1573 LARREGRGEKKKKKKKKKKKKKKKKKK--------------------------------- 1599
++ + KKK+KK+K+K++ K KKK
Sbjct: 194 AVEKKSKKPKKKEKKEKEKERDKDKKKEVEGFKSLLLALDDSPASAASVAEADEASLANT 253
Query: 1600 ----------------KKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGGG 1641
+ ++ KK K KKKK++K+K++KKKKKK + + +GG
Sbjct: 254 VSGTAPDSEPDEPKDAEAEETKKSPKHKKKKQRKEKEEKKKKKKHHHHRCHHSDGGAE 311
Score = 40.0 bits (93), Expect = 0.010
Identities = 24/100 (24%), Positives = 38/100 (38%), Gaps = 1/100 (1%)
Query: 1548 GKIPQAWASKSYPSLKP-LGSYIVDLLARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKK 1606
K S S + L G + + K + ++ KK K KKKK
Sbjct: 225 FKSLLLALDDSPASAASVAEADEASLANTVSGTAPDSEPDEPKDAEAEETKKSPKHKKKK 284
Query: 1607 YKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGGGGEKEL 1646
+K+K++KKKKKK + + + G E+ L
Sbjct: 285 QRKEKEEKKKKKKHHHHRCHHSDGGAEQPVQNGAVEEEPL 324
Score = 38.5 bits (89), Expect = 0.033
Identities = 18/49 (36%), Positives = 30/49 (61%)
Query: 1584 KKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKK 1632
+K + + K +K +KK KK KKK+KK+K+K++ K KKK+ +
Sbjct: 176 QKHRNAETSKSPEKGDVPAVEKKSKKPKKKEKKEKEKERDKDKKKEVEG 224
Score = 38.5 bits (89), Expect = 0.034
Identities = 24/83 (28%), Positives = 40/83 (48%)
Query: 1536 KELEEINTSIMFGKIPQAWASKSYPSLKPLGSYIVDLLARREGRGEKKKKKKKKKKKKKK 1595
KE+E + ++ A A+ + + + V A E K + ++ KK K
Sbjct: 220 KEVEGFKSLLLALDDSPASAASVAEADEASLANTVSGTAPDSEPDEPKDAEAEETKKSPK 279
Query: 1596 KKKKKKKKKKKYKKKKKKKKKKK 1618
KKKK++K+K+ KKKKKK +
Sbjct: 280 HKKKKQRKEKEEKKKKKKHHHHR 302
Score = 38.5 bits (89), Expect = 0.036
Identities = 18/42 (42%), Positives = 26/42 (61%)
Query: 1583 KKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKK 1624
K +K +KK KK KKK+KK K+K++ K KKK+ + K
Sbjct: 185 KSPEKGDVPAVEKKSKKPKKKEKKEKEKERDKDKKKEVEGFK 226
Score = 38.1 bits (88), Expect = 0.040
Identities = 19/50 (38%), Positives = 29/50 (58%)
Query: 1590 KKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGG 1639
+K + + K +K +KK KK KKK+KK+K+K++ K KK EG
Sbjct: 176 QKHRNAETSKSPEKGDVPAVEKKSKKPKKKEKKEKEKERDKDKKKEVEGF 225
Score = 37.7 bits (87), Expect = 0.062
Identities = 19/54 (35%), Positives = 30/54 (55%)
Query: 1572 LLARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKK 1625
L ++ E K +K +KK KK KKK+K +K+K++ K KKK+ + K
Sbjct: 173 LPVQKHRNAETSKSPEKGDVPAVEKKSKKPKKKEKKEKEKERDKDKKKEVEGFK 226
Score = 37.4 bits (86), Expect = 0.068
Identities = 21/60 (35%), Positives = 33/60 (55%)
Query: 1573 LARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKK 1632
LA E +K + + K +K +KK K KKK+KK+K+K++ K KKK+ + K
Sbjct: 167 LADSEKLPVQKHRNAETSKSPEKGDVPAVEKKSKKPKKKEKKEKEKERDKDKKKEVEGFK 226
Score = 37.4 bits (86), Expect = 0.081
Identities = 18/50 (36%), Positives = 28/50 (56%)
Query: 1589 KKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREG 1638
+K + + K +K +KK KK KKK+KK+K+K++ K KKK
Sbjct: 176 QKHRNAETSKSPEKGDVPAVEKKSKKPKKKEKKEKEKERDKDKKKEVEGF 225
Score = 37.0 bits (85), Expect = 0.083
Identities = 18/51 (35%), Positives = 30/51 (58%)
Query: 1583 KKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
+K + + K +K +KK K KKK+KK+K+K++ K KKK+ + K
Sbjct: 176 QKHRNAETSKSPEKGDVPAVEKKSKKPKKKEKKEKEKERDKDKKKEVEGFK 226
Score = 37.0 bits (85), Expect = 0.091
Identities = 19/53 (35%), Positives = 31/53 (58%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
EK +K + + K +K + K KK KKK+KK+K+K++ K KKK+ +
Sbjct: 171 EKLPVQKHRNAETSKSPEKGDVPAVEKKSKKPKKKEKKEKEKERDKDKKKEVE 223
Score = 37.0 bits (85), Expect = 0.10
Identities = 17/50 (34%), Positives = 30/50 (60%)
Query: 1585 KKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKY 1634
+K + + K +K +K KK KKK+KK+K+K++ K KKK+ + +
Sbjct: 176 QKHRNAETSKSPEKGDVPAVEKKSKKPKKKEKKEKEKERDKDKKKEVEGF 225
Score = 33.9 bits (77), Expect = 0.74
Identities = 9/38 (23%), Positives = 28/38 (73%)
Query: 1600 KKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSRE 1637
K +++++++++ +K K++KKK++K+K+ +++ E
Sbjct: 83 KLEEERRHRQRLEKDKREKKKREKEKRGRRRHHSLGTE 120
Score = 33.9 bits (77), Expect = 0.93
Identities = 8/33 (24%), Positives = 26/33 (78%)
Query: 1596 KKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKK 1628
K +++++ +++ +K K++KKK++K+K+ +++
Sbjct: 83 KLEEERRHRQRLEKDKREKKKREKEKRGRRRHH 115
Score = 33.5 bits (76), Expect = 1.0
Identities = 12/40 (30%), Positives = 23/40 (57%)
Query: 1564 PLGSYIVDLLARREGRGEKKKKKKKKKKKKKKKKKKKKKK 1603
P+ V L R R +K K++KKK++K+K+ +++
Sbjct: 76 PMSDQYVKLEEERRHRQRLEKDKREKKKREKEKRGRRRHH 115
Score = 33.5 bits (76), Expect = 1.2
Identities = 9/30 (30%), Positives = 22/30 (73%)
Query: 1577 EGRGEKKKKKKKKKKKKKKKKKKKKKKKKK 1606
E R +++ +K K++KKK++K+K+ +++
Sbjct: 86 EERRHRQRLEKDKREKKKREKEKRGRRRHH 115
Score = 33.1 bits (75), Expect = 1.5
Identities = 8/30 (26%), Positives = 23/30 (76%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKK 1610
E+++ +++ +K K++KKK++K+K+ + +
Sbjct: 86 EERRHRQRLEKDKREKKKREKEKRGRRRHH 115
Score = 32.7 bits (74), Expect = 1.7
Identities = 8/33 (24%), Positives = 25/33 (75%)
Query: 1585 KKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKK 1617
K +++++ +++ +K K++KKK+ K+K+ +++
Sbjct: 83 KLEEERRHRQRLEKDKREKKKREKEKRGRRRHH 115
Score = 32.7 bits (74), Expect = 1.8
Identities = 17/50 (34%), Positives = 28/50 (56%)
Query: 1592 KKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGGG 1641
+K + + K +K +KK KK KKK+KK+K+K++ K +E G
Sbjct: 176 QKHRNAETSKSPEKGDVPAVEKKSKKPKKKEKKEKEKERDKDKKKEVEGF 225
Score = 32.7 bits (74), Expect = 2.1
Identities = 16/51 (31%), Positives = 29/51 (56%)
Query: 1593 KKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGGGGE 1643
+K + + K +K +KK KK KKK+KK+K+K++ K ++ G +
Sbjct: 176 QKHRNAETSKSPEKGDVPAVEKKSKKPKKKEKKEKEKERDKDKKKEVEGFK 226
Score = 32.7 bits (74), Expect = 2.1
Identities = 8/31 (25%), Positives = 24/31 (77%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKK 1611
E++++ +++ +K K++KKK++K+K+ ++
Sbjct: 85 EEERRHRQRLEKDKREKKKREKEKRGRRRHH 115
Score = 32.7 bits (74), Expect = 2.1
Identities = 11/40 (27%), Positives = 27/40 (67%)
Query: 1606 KYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGGGGEKE 1645
K +++++ +++ +K K++KKK++K+K+ R G E +
Sbjct: 83 KLEEERRHRQRLEKDKREKKKREKEKRGRRRHHSLGTESD 122
Score = 32.3 bits (73), Expect = 2.3
Identities = 8/33 (24%), Positives = 25/33 (75%)
Query: 1598 KKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKK 1630
K +++++ + + +K K++KKK++K+K+ +++
Sbjct: 83 KLEEERRHRQRLEKDKREKKKREKEKRGRRRHH 115
Score = 32.3 bits (73), Expect = 2.3
Identities = 8/33 (24%), Positives = 25/33 (75%)
Query: 1583 KKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKK 1615
K +++++ +++ +K K++KKK++K K+ +++
Sbjct: 83 KLEEERRHRQRLEKDKREKKKREKEKRGRRRHH 115
Score = 32.3 bits (73), Expect = 2.3
Identities = 8/33 (24%), Positives = 25/33 (75%)
Query: 1595 KKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKK 1627
K +++++ +++ K K++KKK++K+K+ +++
Sbjct: 83 KLEEERRHRQRLEKDKREKKKREKEKRGRRRHH 115
Score = 32.0 bits (72), Expect = 3.0
Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 1550 IPQAWASKSYPSLKPLGSYIVDLLARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKK 1606
IP S P LK G + D + E +++ +K K++KKK++K+K+ +++
Sbjct: 59 IPVVQIDLSVP-LKVPGLPMSDQYVKLEEERRHRQRLEKDKREKKKREKEKRGRRRH 114
Score = 32.0 bits (72), Expect = 3.2
Identities = 7/31 (22%), Positives = 25/31 (80%)
Query: 1582 KKKKKKKKKKKKKKKKKKKKKKKKKYKKKKK 1612
+++++ +++ +K K++KKK++K+K+ +++
Sbjct: 85 EEERRHRQRLEKDKREKKKREKEKRGRRRHH 115
Score = 32.0 bits (72), Expect = 3.2
Identities = 10/41 (24%), Positives = 27/41 (65%)
Query: 1597 KKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSRE 1637
K +++++ ++ +K K++KKK++K+K+ +++ S E
Sbjct: 83 KLEEERRHRQRLEKDKREKKKREKEKRGRRRHHSLGTESDE 123
Score = 31.6 bits (71), Expect = 4.6
Identities = 8/33 (24%), Positives = 25/33 (75%)
Query: 1590 KKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKK 1622
K +++++ +++ +K K+ KKK++K+K+ +++
Sbjct: 83 KLEEERRHRQRLEKDKREKKKREKEKRGRRRHH 115
Score = 31.6 bits (71), Expect = 4.8
Identities = 8/33 (24%), Positives = 25/33 (75%)
Query: 1586 KKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKK 1618
K +++++ +++ +K K++KKK +K+K+ +++
Sbjct: 83 KLEEERRHRQRLEKDKREKKKREKEKRGRRRHH 115
Score = 31.2 bits (70), Expect = 5.0
Identities = 8/33 (24%), Positives = 25/33 (75%)
Query: 1591 KKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKK 1623
K +++++ +++ +K K +KKK++K+K+ +++
Sbjct: 83 KLEEERRHRQRLEKDKREKKKREKEKRGRRRHH 115
Score = 31.2 bits (70), Expect = 5.1
Identities = 8/33 (24%), Positives = 26/33 (78%)
Query: 1593 KKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKK 1625
K +++++ +++ +K K++KKK++K+K+ +++
Sbjct: 83 KLEEERRHRQRLEKDKREKKKREKEKRGRRRHH 115
Score = 30.8 bits (69), Expect = 6.6
Identities = 7/33 (21%), Positives = 25/33 (75%)
Query: 1587 KKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKK 1619
K +++++ +++ +K K++KK ++K+K+ +++
Sbjct: 83 KLEEERRHRQRLEKDKREKKKREKEKRGRRRHH 115
Score = 30.8 bits (69), Expect = 6.6
Identities = 7/33 (21%), Positives = 25/33 (75%)
Query: 1582 KKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKK 1614
K +++++ +++ +K K++KKK++K+ + +++
Sbjct: 83 KLEEERRHRQRLEKDKREKKKREKEKRGRRRHH 115
Score = 30.8 bits (69), Expect = 6.6
Identities = 7/33 (21%), Positives = 25/33 (75%)
Query: 1584 KKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKK 1616
K +++++ +++ +K K++KKK++ +K+ +++
Sbjct: 83 KLEEERRHRQRLEKDKREKKKREKEKRGRRRHH 115
Score = 30.8 bits (69), Expect = 7.0
Identities = 9/43 (20%), Positives = 29/43 (67%)
Query: 1604 KKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGGGGEKEL 1646
K + +++ +++ +K K++KKK++K+K+ ++ G ++++
Sbjct: 83 KLEEERRHRQRLEKDKREKKKREKEKRGRRRHHSLGTESDEDI 125
Score = 30.8 bits (69), Expect = 8.2
Identities = 7/33 (21%), Positives = 25/33 (75%)
Query: 1588 KKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKK 1620
K +++++ +++ +K K++K K++K+K+ +++
Sbjct: 83 KLEEERRHRQRLEKDKREKKKREKEKRGRRRHH 115
Score = 30.8 bits (69), Expect = 8.2
Identities = 7/33 (21%), Positives = 25/33 (75%)
Query: 1589 KKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKK 1621
K +++++ +++ +K K++ KK++K+K+ +++
Sbjct: 83 KLEEERRHRQRLEKDKREKKKREKEKRGRRRHH 115
Score = 30.8 bits (69), Expect = 8.2
Identities = 7/33 (21%), Positives = 25/33 (75%)
Query: 1592 KKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKK 1624
K +++++ +++ +K ++KKK++K+K+ +++
Sbjct: 83 KLEEERRHRQRLEKDKREKKKREKEKRGRRRHH 115
Score = 30.8 bits (69), Expect = 8.2
Identities = 7/33 (21%), Positives = 25/33 (75%)
Query: 1594 KKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKK 1626
K +++++ +++ + K++KKK++K+K+ +++
Sbjct: 83 KLEEERRHRQRLEKDKREKKKREKEKRGRRRHH 115
>gnl|CDD|235132 PRK03577, PRK03577, acid shock protein precursor; Provisional.
Length = 102
Score = 38.9 bits (90), Expect = 0.002
Identities = 18/51 (35%), Positives = 26/51 (50%)
Query: 1582 KKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKK 1632
KK+ KK ++K + KK K KK +K ++K + KK KK K K
Sbjct: 45 HHKKQHKKAPEQKAQAAKKHHKNKKEQKAPEQKAQAAKKHAKKHSHKTAAK 95
Score = 36.9 bits (85), Expect = 0.010
Identities = 18/52 (34%), Positives = 28/52 (53%)
Query: 1582 KKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
K KK+ KK ++K + KK +K KK++K ++K + KK KK K
Sbjct: 40 AKTTHHHKKQHKKAPEQKAQAAKKHHKNKKEQKAPEQKAQAAKKHAKKHSHK 91
Score = 36.9 bits (85), Expect = 0.011
Identities = 17/52 (32%), Positives = 26/52 (50%)
Query: 1582 KKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
KK+ KK ++K + KK K K ++K ++K + KK KK K K
Sbjct: 44 HHHKKQHKKAPEQKAQAAKKHHKNKKEQKAPEQKAQAAKKHAKKHSHKTAAK 95
Score = 35.4 bits (81), Expect = 0.035
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 1583 KKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKK--KKKKKKKKKKKKKKKKKKYSR 1636
K KK+ KK ++K + KK+ K KK++K ++K + KK KK K ++
Sbjct: 40 AKTTHHHKKQHKKAPEQKAQAAKKHHKNKKEQKAPEQKAQAAKKHAKKHSHKTAAK 95
Score = 35.4 bits (81), Expect = 0.043
Identities = 18/54 (33%), Positives = 28/54 (51%)
Query: 1582 KKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYS 1635
K KK+ KK ++K + KK K KK++K ++K + KK KK+S
Sbjct: 36 TAAPAKTTHHHKKQHKKAPEQKAQAAKKHHKNKKEQKAPEQKAQAAKKHAKKHS 89
Score = 32.7 bits (74), Expect = 0.30
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKK 1621
E+K + KK K KK++K ++K + KK KK K K
Sbjct: 55 EQKAQAAKKHHKNKKEQKAPEQKAQAAKKHAKKHSHKTAAK 95
Score = 31.2 bits (70), Expect = 1.4
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 1577 EGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKK 1617
E + + KK K KK++K ++K + KK KK K K
Sbjct: 55 EQKAQAAKKHHKNKKEQKAPEQKAQAAKKHAKKHSHKTAAK 95
>gnl|CDD|218941 pfam06217, GAGA_bind, GAGA binding protein-like family. This family
includes gbp a protein from Soybean that binds to GAGA
element dinucleotide repeat DNA. It seems likely that the
this domain mediates DNA binding. This putative domain
contains several conserved cysteines and a histidine
suggesting this may be a zinc-binding DNA interaction
domain.
Length = 301
Score = 41.8 bits (98), Expect = 0.002
Identities = 16/55 (29%), Positives = 20/55 (36%)
Query: 1576 REGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKK 1630
E K+ KK KK + K K K KK K K + K + K K
Sbjct: 138 STAPPEAKEVKKPKKGQSPKVPKAPKPKKPKKKGSVSNRSVKMPGIDPRSKPDWK 192
Score = 38.7 bits (90), Expect = 0.017
Identities = 16/49 (32%), Positives = 20/49 (40%)
Query: 1584 KKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKK 1632
K+ KK KK + K K K KK KKK + K + K K
Sbjct: 144 AKEVKKPKKGQSPKVPKAPKPKKPKKKGSVSNRSVKMPGIDPRSKPDWK 192
Score = 37.9 bits (88), Expect = 0.033
Identities = 15/49 (30%), Positives = 19/49 (38%)
Query: 1585 KKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
K+ KK KK + K K K K KKK + K + K K
Sbjct: 144 AKEVKKPKKGQSPKVPKAPKPKKPKKKGSVSNRSVKMPGIDPRSKPDWK 192
Score = 37.9 bits (88), Expect = 0.039
Identities = 15/49 (30%), Positives = 19/49 (38%)
Query: 1583 KKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKK 1631
K+ KK KK + K K K KK KK + K + K K
Sbjct: 144 AKEVKKPKKGQSPKVPKAPKPKKPKKKGSVSNRSVKMPGIDPRSKPDWK 192
Score = 37.2 bits (86), Expect = 0.060
Identities = 15/45 (33%), Positives = 19/45 (42%)
Query: 1592 KKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSR 1636
K+ KK KK + K K K KK KKK + K S+
Sbjct: 144 AKEVKKPKKGQSPKVPKAPKPKKPKKKGSVSNRSVKMPGIDPRSK 188
Score = 36.4 bits (84), Expect = 0.10
Identities = 14/41 (34%), Positives = 17/41 (41%)
Query: 1598 KKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREG 1638
K+ KK KK + K K K KK KKK + K
Sbjct: 144 AKEVKKPKKGQSPKVPKAPKPKKPKKKGSVSNRSVKMPGID 184
Score = 33.3 bits (76), Expect = 1.1
Identities = 15/42 (35%), Positives = 18/42 (42%)
Query: 1604 KKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGGGGEKE 1645
K+ KK KK + K K K KK KKK +R G
Sbjct: 144 AKEVKKPKKGQSPKVPKAPKPKKPKKKGSVSNRSVKMPGIDP 185
Score = 32.9 bits (75), Expect = 1.2
Identities = 15/50 (30%), Positives = 21/50 (42%)
Query: 1601 KKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGGGGEKELVQKN 1650
K+ KK KK + K K K KK KKK + + G + K+
Sbjct: 144 AKEVKKPKKGQSPKVPKAPKPKKPKKKGSVSNRSVKMPGIDPRSKPDWKS 193
Score = 32.5 bits (74), Expect = 1.7
Identities = 13/71 (18%), Positives = 20/71 (28%)
Query: 1551 PQAWASKSYPSLKPLGSYIVDLLARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKK 1610
+ + P S + + + K K K KK KKK + K
Sbjct: 122 NPYGTREMHHLEVPPISTAPPEAKEVKKPKKGQSPKVPKAPKPKKPKKKGSVSNRSVKMP 181
Query: 1611 KKKKKKKKKKK 1621
+ K K
Sbjct: 182 GIDPRSKPDWK 192
>gnl|CDD|219621 pfam07890, Rrp15p, Rrp15p. Rrp15p is required for the formation of
60S ribosomal subunits.
Length = 132
Score = 39.3 bits (92), Expect = 0.003
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 5/54 (9%)
Query: 1583 KKKKKKKKKK-----KKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKK 1631
K K+K + KK K KKK K K +KK K++ + +K++ +K + K
Sbjct: 11 ASKLPASKRKDPILSRSKKLLKAKKKLKSEKLEKKAKRQLRAEKRQALEKGRVK 64
Score = 38.5 bits (90), Expect = 0.006
Identities = 16/52 (30%), Positives = 27/52 (51%)
Query: 1585 KKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSR 1636
K K+K + KK K KKK K +K +KK K++ + +K++ + R
Sbjct: 11 ASKLPASKRKDPILSRSKKLLKAKKKLKSEKLEKKAKRQLRAEKRQALEKGR 62
Score = 38.1 bits (89), Expect = 0.006
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 5/54 (9%)
Query: 1584 KKKKKKKKKK-----KKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKK 1632
K K+K + KK K KKK K +K +KK K++ + +K++ +K + K
Sbjct: 11 ASKLPASKRKDPILSRSKKLLKAKKKLKSEKLEKKAKRQLRAEKRQALEKGRVK 64
Score = 37.0 bits (86), Expect = 0.021
Identities = 14/37 (37%), Positives = 23/37 (62%)
Query: 1582 KKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKK 1618
KK K KKK K +K +KK K++ + K++ +K + K
Sbjct: 28 KKLLKAKKKLKSEKLEKKAKRQLRAEKRQALEKGRVK 64
Score = 36.6 bits (85), Expect = 0.024
Identities = 14/40 (35%), Positives = 24/40 (60%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKK 1620
+ KK K KKK K +K +KK K++ +K++ +K + K
Sbjct: 25 SRSKKLLKAKKKLKSEKLEKKAKRQLRAEKRQALEKGRVK 64
Score = 33.9 bits (78), Expect = 0.23
Identities = 20/102 (19%), Positives = 39/102 (38%), Gaps = 35/102 (34%)
Query: 1572 LLARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKK------------------- 1612
L ++ KKK K +K +KK K++ + +K++ K + K
Sbjct: 24 LSRSKKLLKAKKKLKSEKLEKKAKRQLRAEKRQALEKGRVKPVLPEDLEKERRLRKVAQK 83
Query: 1613 ----------------KKKKKKKKKKKKKKKKKKKKKYSREG 1638
+K K+ KK + K+++ K+ S+E
Sbjct: 84 GVVKLFNAVRAAQKKTEKAVKEAGKKARVKREELLKEVSKEK 125
Score = 31.6 bits (72), Expect = 1.2
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 6/43 (13%)
Query: 1601 KKKKKKYKKKK------KKKKKKKKKKKKKKKKKKKKKKYSRE 1637
K K+K KK K KKK K +K +KK K++ E
Sbjct: 11 ASKLPASKRKDPILSRSKKLLKAKKKLKSEKLEKKAKRQLRAE 53
>gnl|CDD|220611 pfam10169, Laps, Learning-associated protein. This is a family of
121-amino acid secretory proteins. Laps functions in the
regulation of neuronal cell adhesion and/or movement and
synapse attachment. Laps binds to the ApC/EBP (Aplysia
CCAAT/enhancer binding protein) promoter and activates
the transcription of ApC/EBP mRNA.
Length = 124
Score = 39.1 bits (91), Expect = 0.003
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 6/66 (9%)
Query: 1574 ARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKK------YKKKKKKKKKKKKKKKKKKKK 1627
++EG ++ +K + K + KK + + +++ KK KKK++KKKKKKK
Sbjct: 59 KKKEGTESEEDDEKMEVDNKAAVRNKKTLRDQHGQYPAWMNQRQAKKLKKKREKKKKKKK 118
Query: 1628 KKKKKK 1633
K
Sbjct: 119 GAKNLA 124
Score = 37.1 bits (86), Expect = 0.015
Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 9/65 (13%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKK---------KKKKKKKKKKKKKKKKK 1631
EKKKK+ + ++ +K + K + KK + + +++ KK KKK++KKKKK
Sbjct: 57 EKKKKEGTESEEDDEKMEVDNKAAVRNKKTLRDQHGQYPAWMNQRQAKKLKKKREKKKKK 116
Query: 1632 KKYSR 1636
KK ++
Sbjct: 117 KKGAK 121
Score = 34.8 bits (80), Expect = 0.089
Identities = 17/64 (26%), Positives = 27/64 (42%)
Query: 1575 RREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKY 1634
RR+ R K+KK K+ + KK K K K ++ K+KKKK+ +
Sbjct: 8 RRKMRAIKRKKNAPKELARLKKALGLIDGNVLMKDVKDIATVKPAEEVKEKKKKEGTESE 67
Query: 1635 SREG 1638
+
Sbjct: 68 EDDE 71
Score = 32.9 bits (75), Expect = 0.42
Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 4/67 (5%)
Query: 1582 KKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKK----KKKKKKKKKKKKYSRE 1637
K ++K + K+KK K+ + KK K K K ++ K+KKKK E
Sbjct: 6 KWRRKMRAIKRKKNAPKELARLKKALGLIDGNVLMKDVKDIATVKPAEEVKEKKKKEGTE 65
Query: 1638 GGGGGEK 1644
EK
Sbjct: 66 SEEDDEK 72
>gnl|CDD|215521 PLN02967, PLN02967, kinase.
Length = 581
Score = 42.0 bits (98), Expect = 0.003
Identities = 25/108 (23%), Positives = 39/108 (36%), Gaps = 30/108 (27%)
Query: 1569 IVDLLARREGRGEKKKKKKKKKKKKKKKKKKKKKKK--------------------KKYK 1608
I LA E E KKK + K+ KK + K+ K
Sbjct: 52 IESALAVDEEPDENGAVSKKKPTRSVKRATKKTVVEISEPLEEGSELVVNEDAALDKESK 111
Query: 1609 KKKKKKKKK----------KKKKKKKKKKKKKKKKYSREGGGGGEKEL 1646
K ++ ++K +K +KK +K++K KK G E E+
Sbjct: 112 KTPRRTRRKAAAASSDVEEEKTEKKVRKRRKVKKMDEDVEDQGSESEV 159
>gnl|CDD|221952 pfam13166, AAA_13, AAA domain. This family of domains contain a
P-loop motif that is characteristic of the AAA
superfamily. Many of the proteins in this family are
conjugative transfer proteins. This family includes the
PrrC protein that is thought to be the active component
of the anticodon nuclease.
Length = 713
Score = 41.5 bits (98), Expect = 0.004
Identities = 15/56 (26%), Positives = 33/56 (58%)
Query: 1580 GEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYS 1635
GE+ + + + ++ KK+ KK ++K ++ + + +KK+++ +K K K K KK
Sbjct: 87 GEENIEIEAQIEELKKELKKLEEKIEQLEAEIEKKEEELEKAKNKFLDKAWKKLAK 142
Score = 38.8 bits (91), Expect = 0.024
Identities = 15/50 (30%), Positives = 28/50 (56%)
Query: 1583 KKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKK 1632
++ KK+ KK ++K ++ + + +KK ++ +K K K K KK KK
Sbjct: 98 EELKKELKKLEEKIEQLEAEIEKKEEELEKAKNKFLDKAWKKLAKKYDSN 147
Score = 38.8 bits (91), Expect = 0.026
Identities = 16/53 (30%), Positives = 32/53 (60%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
E + + ++ KK+ KK ++K ++ + + +KK+++ +K K K K KK KK
Sbjct: 92 EIEAQIEELKKELKKLEEKIEQLEAEIEKKEEELEKAKNKFLDKAWKKLAKKY 144
Score = 38.5 bits (90), Expect = 0.039
Identities = 18/73 (24%), Positives = 38/73 (52%)
Query: 1565 LGSYIVDLLARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKK 1624
LG +++ A+ E ++ KK ++K ++ + + +KK+++ +K K K K KK KK
Sbjct: 86 LGEENIEIEAQIEELKKELKKLEEKIEQLEAEIEKKEEELEKAKNKFLDKAWKKLAKKYD 145
Query: 1625 KKKKKKKKKYSRE 1637
+ K + +
Sbjct: 146 SNLSEALKGLNYK 158
Score = 38.1 bits (89), Expect = 0.046
Identities = 16/60 (26%), Positives = 31/60 (51%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGG 1640
+ ++ KK+ KK ++K ++ + + +K +++ +K K K K KK KK S G
Sbjct: 95 AQIEELKKELKKLEEKIEQLEAEIEKKEEELEKAKNKFLDKAWKKLAKKYDSNLSEALKG 154
Score = 35.4 bits (82), Expect = 0.33
Identities = 15/54 (27%), Positives = 27/54 (50%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKY 1634
E+K ++ + + +KK+++ +K K K K KK KK + K KK +
Sbjct: 108 EEKIEQLEAEIEKKEEELEKAKNKFLDKAWKKLAKKYDSNLSEALKGLNYKKNF 161
Score = 34.2 bits (79), Expect = 0.66
Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
Query: 1571 DLLARREGRGEKKKKKKKKKKKKKKKKKKKKKK---KKKYKKKKKKKKKKKKKKKKKKKK 1627
L + E + E+ + + +KK+++ +K K K KK KK + K KK
Sbjct: 102 KELKKLEEKIEQLEAEIEKKEEELEKAKNKFLDKAWKKLAKKYDSNLSEALKGLNYKKNF 161
Query: 1628 KKKKKK 1633
K+K K
Sbjct: 162 KEKLLK 167
Score = 33.4 bits (77), Expect = 1.1
Identities = 18/55 (32%), Positives = 26/55 (47%)
Query: 1579 RGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
+KK+++ +K K K K KK KKY + K KK K+K K+ K
Sbjct: 116 AEIEKKEEELEKAKNKFLDKAWKKLAKKYDSNLSEALKGLNYKKNFKEKLLKELK 170
Score = 33.1 bits (76), Expect = 1.6
Identities = 14/53 (26%), Positives = 26/53 (49%)
Query: 1582 KKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKY 1634
++ + + +KK+++ +K K K K +KK KK + K KK K+
Sbjct: 112 EQLEAEIEKKEEELEKAKNKFLDKAWKKLAKKYDSNLSEALKGLNYKKNFKEK 164
Score = 33.1 bits (76), Expect = 1.8
Identities = 17/64 (26%), Positives = 27/64 (42%)
Query: 1571 DLLARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKK 1630
L + E + +KK+++ +K K K K KK K + K KK K+K
Sbjct: 106 KLEEKIEQLEAEIEKKEEELEKAKNKFLDKAWKKLAKKYDSNLSEALKGLNYKKNFKEKL 165
Query: 1631 KKKY 1634
K+
Sbjct: 166 LKEL 169
Score = 31.9 bits (73), Expect = 3.6
Identities = 16/51 (31%), Positives = 22/51 (43%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKK 1631
E++ +K K K K KK KK + K KK K+K K+ K
Sbjct: 122 EEELEKAKNKFLDKAWKKLAKKYDSNLSEALKGLNYKKNFKEKLLKELKSV 172
Score = 31.9 bits (73), Expect = 3.9
Identities = 18/57 (31%), Positives = 25/57 (43%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSRE 1637
EKK+++ +K K K K KK KK + K KK K+K K+ K
Sbjct: 119 EKKEEELEKAKNKFLDKAWKKLAKKYDSNLSEALKGLNYKKNFKEKLLKELKSVILN 175
Score = 31.5 bits (72), Expect = 4.2
Identities = 16/62 (25%), Positives = 25/62 (40%)
Query: 1574 ARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
E ++++ +K K K K KK KK + K KK K+K K+ K
Sbjct: 114 LEAEIEKKEEELEKAKNKFLDKAWKKLAKKYDSNLSEALKGLNYKKNFKEKLLKELKSVI 173
Query: 1634 YS 1635
+
Sbjct: 174 LN 175
>gnl|CDD|151665 pfam11223, DUF3020, Protein of unknown function (DUF3020). This
family of fungal proteins is conserved towards the
C-terminus of HMG domains. The function is not known.
Length = 49
Score = 36.4 bits (84), Expect = 0.004
Identities = 13/47 (27%), Positives = 25/47 (53%)
Query: 1591 KKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSRE 1637
+++KKK ++ ++ + + KKK KKK K+ K+K Y +
Sbjct: 1 NRERKKKWREANSERNKDNDLRSRVKKKAKKKFGKEDSKEKDAYIDD 47
Score = 36.4 bits (84), Expect = 0.004
Identities = 13/43 (30%), Positives = 24/43 (55%)
Query: 1583 KKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKK 1625
+++KKK ++ ++ K + + KKK KKK K+ K+K
Sbjct: 1 NRERKKKWREANSERNKDNDLRSRVKKKAKKKFGKEDSKEKDA 43
Score = 36.4 bits (84), Expect = 0.005
Identities = 13/43 (30%), Positives = 24/43 (55%)
Query: 1585 KKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKK 1627
+++KKK ++ ++ K + + KKK KKK K+ K+K
Sbjct: 1 NRERKKKWREANSERNKDNDLRSRVKKKAKKKFGKEDSKEKDA 43
Score = 36.0 bits (83), Expect = 0.006
Identities = 13/43 (30%), Positives = 24/43 (55%)
Query: 1589 KKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKK 1631
+++KKK ++ ++ K + + KKK KKK K+ K+K
Sbjct: 1 NRERKKKWREANSERNKDNDLRSRVKKKAKKKFGKEDSKEKDA 43
Score = 36.0 bits (83), Expect = 0.007
Identities = 13/43 (30%), Positives = 24/43 (55%)
Query: 1590 KKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKK 1632
+++KKK ++ ++ K + + KKK KKK K+ K+K
Sbjct: 1 NRERKKKWREANSERNKDNDLRSRVKKKAKKKFGKEDSKEKDA 43
Score = 35.3 bits (81), Expect = 0.012
Identities = 13/43 (30%), Positives = 24/43 (55%)
Query: 1587 KKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKK 1629
+++KKK ++ ++ K + + KKK KKK K+ K+K
Sbjct: 1 NRERKKKWREANSERNKDNDLRSRVKKKAKKKFGKEDSKEKDA 43
Score = 34.9 bits (80), Expect = 0.016
Identities = 13/43 (30%), Positives = 23/43 (53%)
Query: 1584 KKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKK 1626
+++KKK ++ ++ K + KKK KKK K+ K+K
Sbjct: 1 NRERKKKWREANSERNKDNDLRSRVKKKAKKKFGKEDSKEKDA 43
Score = 34.9 bits (80), Expect = 0.017
Identities = 13/43 (30%), Positives = 24/43 (55%)
Query: 1588 KKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKK 1630
+++KKK ++ ++ K + + KKK KKK K+ K+K
Sbjct: 1 NRERKKKWREANSERNKDNDLRSRVKKKAKKKFGKEDSKEKDA 43
Score = 34.1 bits (78), Expect = 0.026
Identities = 12/43 (27%), Positives = 23/43 (53%)
Query: 1582 KKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKK 1624
+++KKK ++ ++ K + + KK KKK K+ K+K
Sbjct: 1 NRERKKKWREANSERNKDNDLRSRVKKKAKKKFGKEDSKEKDA 43
Score = 34.1 bits (78), Expect = 0.026
Identities = 13/43 (30%), Positives = 23/43 (53%)
Query: 1586 KKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKK 1628
+++KKK ++ ++ K + KKK KKK K+ K+K
Sbjct: 1 NRERKKKWREANSERNKDNDLRSRVKKKAKKKFGKEDSKEKDA 43
Score = 33.3 bits (76), Expect = 0.055
Identities = 14/41 (34%), Positives = 23/41 (56%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKK 1621
E+KKK ++ ++ K + + KKK KKK K+ K+K
Sbjct: 3 ERKKKWREANSERNKDNDLRSRVKKKAKKKFGKEDSKEKDA 43
Score = 32.6 bits (74), Expect = 0.12
Identities = 12/42 (28%), Positives = 23/42 (54%)
Query: 1576 REGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKK 1617
RE + + ++ ++ K + + KKK KKK+ K+ K+K
Sbjct: 2 RERKKKWREANSERNKDNDLRSRVKKKAKKKFGKEDSKEKDA 43
Score = 31.4 bits (71), Expect = 0.29
Identities = 13/42 (30%), Positives = 21/42 (50%)
Query: 1579 RGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKK 1620
R KKK ++ ++ K + + KKK KK K+ K+K
Sbjct: 2 RERKKKWREANSERNKDNDLRSRVKKKAKKKFGKEDSKEKDA 43
>gnl|CDD|240577 cd12950, RRP7_Rrp7p, RRP7 domain ribosomal RNA-processing protein 7
(Rrp7p) and similar proteins. This CD corresponds to the
RRP7 domain of Rrp7p. Rrp7p is encoded by YCL031C gene
from Saccharomyces cerevisiae. It is an essential yeast
protein involved in pre-rRNA processing and ribosome
assembly. Rrp7p contains an N-terminal RNA recognition
motif (RRM), also termed RBD (RNA binding domain) or RNP
(ribonucleoprotein domain), and a C-terminal RRP7 domain.
Length = 128
Score = 38.8 bits (91), Expect = 0.004
Identities = 22/63 (34%), Positives = 40/63 (63%), Gaps = 4/63 (6%)
Query: 1578 GRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKK----KKKKKKKKKKKKKKK 1633
E K +++KK+K+KKKKKKK+ + Y+ + ++KKK++ KK ++ K++ +K K
Sbjct: 66 AGEEAGKAAEEEKKEKEKKKKKKKELEDFYRFQLREKKKEEQADLLKKFEEDKERVEKMK 125
Query: 1634 YSR 1636
R
Sbjct: 126 EKR 128
Score = 37.6 bits (88), Expect = 0.009
Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 9/69 (13%)
Query: 1566 GSYIVDLLARREGRGEKKKKKKKKKKKKKKKKK---------KKKKKKKKYKKKKKKKKK 1616
G E++KK+K+KKKKKKK+ + KKK+++ KK ++ K+
Sbjct: 60 GRKGPAAGEEAGKAAEEEKKEKEKKKKKKKELEDFYRFQLREKKKEEQADLLKKFEEDKE 119
Query: 1617 KKKKKKKKK 1625
+ +K K+K+
Sbjct: 120 RVEKMKEKR 128
Score = 36.9 bits (86), Expect = 0.016
Identities = 20/66 (30%), Positives = 39/66 (59%), Gaps = 6/66 (9%)
Query: 1574 ARREGRGEKKKKKKKKKKKKKKKKKKKKKK------KKKYKKKKKKKKKKKKKKKKKKKK 1627
G K +++KK+K+KKKKKKK+ + ++ KK+++ KK ++ K++ +
Sbjct: 63 GPAAGEEAGKAAEEEKKEKEKKKKKKKELEDFYRFQLREKKKEEQADLLKKFEEDKERVE 122
Query: 1628 KKKKKK 1633
K K+K+
Sbjct: 123 KMKEKR 128
>gnl|CDD|220413 pfam09805, Nop25, Nucleolar protein 12 (25kDa). Members of this
family of proteins are part of the yeast nuclear pore
complex-associated pre-60S ribosomal subunit. The family
functions as a highly conserved exonuclease that is
required for the 5'-end maturation of 5.8S and 25S rRNAs,
demonstrating that 5'-end processing also has a redundant
pathway. Nop25 binds late pre-60S ribosomes, accompanying
them from the nucleolus to the nuclear periphery; and
there is evidence for both physical and functional links
between late 60S subunit processing and export.
Length = 134
Score = 38.8 bits (91), Expect = 0.004
Identities = 17/68 (25%), Positives = 46/68 (67%), Gaps = 12/68 (17%)
Query: 1582 KKKKKKKKKKK-----KKKKK-------KKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKK 1629
KKKK KKK + K+ +K K+K++++KK +++ K+K+++++ +++K+ +++
Sbjct: 1 KKKKAKKKGVEEVVFDKEARKEYLTGFHKRKQQRRKKAQEEAKEKEREERIEERKRIREE 60
Query: 1630 KKKKYSRE 1637
+K++ ++
Sbjct: 61 RKQELEKQ 68
Score = 38.1 bits (89), Expect = 0.008
Identities = 14/61 (22%), Positives = 43/61 (70%)
Query: 1585 KKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGGGGEK 1644
K+K++++KK +++ K+K+++++ +++K+ ++++K++ +K+ K++K+ K E E
Sbjct: 29 KRKQQRRKKAQEEAKEKEREERIEERKRIREERKQELEKQLKERKEALKLLEEENDDEED 88
Query: 1645 E 1645
Sbjct: 89 A 89
Score = 37.3 bits (87), Expect = 0.017
Identities = 14/62 (22%), Positives = 43/62 (69%)
Query: 1584 KKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGGGGE 1643
K+K++++KK +++ K+K+++++ ++K+ ++++K++ +K+ K++K+ K E +
Sbjct: 29 KRKQQRRKKAQEEAKEKEREERIEERKRIREERKQELEKQLKERKEALKLLEEENDDEED 88
Query: 1644 KE 1645
E
Sbjct: 89 AE 90
Score = 29.2 bits (66), Expect = 9.3
Identities = 10/46 (21%), Positives = 38/46 (82%)
Query: 1582 KKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKK 1627
++++KK +++ K+K+++++ +++K+ ++++K++ +K+ K++K+ K
Sbjct: 32 QQRRKKAQEEAKEKEREERIEERKRIREERKQELEKQLKERKEALK 77
>gnl|CDD|218585 pfam05424, Duffy_binding, Duffy binding domain. This domain is found
in Plasmodium Duffy binding proteins. Plasmodium vivax
and Plasmodium knowlesi merozoites invade human
erythrocytes that express Duffy blood group surface
determinants. The Duffy receptor family is localised in
micronemes, an organelle found in all organisms of the
phylum Apicomplexa.
Length = 276
Score = 40.4 bits (95), Expect = 0.005
Identities = 29/64 (45%), Positives = 35/64 (54%), Gaps = 9/64 (14%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKK---------KKYKKKKKKKKKKKKKKKKKKKKKKKK 1631
E+KKK +K KKK K+KK K K KKYKK KKK+ K+KKK KK KK+
Sbjct: 200 ERKKKLEKLKKKCKEKKCNKYCSKKCTKCKNACKKYKKWIDNKKKEWDKQKKKYKKYKKR 259
Query: 1632 KKYS 1635
Sbjct: 260 NNKK 263
Score = 40.0 bits (94), Expect = 0.007
Identities = 24/62 (38%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
Query: 1579 RGEKKKKKKKKKKKK-----KKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
+ +K K KK K KK KK KKK++ K+KKK KK KK+ KK K K
Sbjct: 213 KEKKCNKYCSKKCTKCKNACKKYKKWIDNKKKEWDKQKKKYKKYKKRNNKKNYSDIKDKY 272
Query: 1634 YS 1635
Sbjct: 273 AK 274
Score = 37.3 bits (87), Expect = 0.046
Identities = 27/66 (40%), Positives = 35/66 (53%), Gaps = 6/66 (9%)
Query: 1586 KKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKK----KKKKKKKKK--KKKKKKYSREGG 1639
+++KKK +K KKK K+KK KY KK K K KK KKK K+KKKY +
Sbjct: 199 RERKKKLEKLKKKCKEKKCNKYCSKKCTKCKNACKKYKKWIDNKKKEWDKQKKKYKKYKK 258
Query: 1640 GGGEKE 1645
+K
Sbjct: 259 RNNKKN 264
Score = 30.8 bits (70), Expect = 6.4
Identities = 17/36 (47%), Positives = 21/36 (58%)
Query: 1582 KKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKK 1617
KKK+ K+KKK KK KK+ KK Y K K K+
Sbjct: 240 DNKKKEWDKQKKKYKKYKKRNNKKNYSDIKDKYAKE 275
>gnl|CDD|185611 PTZ00428, PTZ00428, 60S ribosomal protein L4; Provisional.
Length = 381
Score = 40.8 bits (96), Expect = 0.005
Identities = 29/127 (22%), Positives = 52/127 (40%), Gaps = 30/127 (23%)
Query: 1536 KELEEINTSIMFGKIPQAWASKS-YPSLKPLGS-----YIVD-------LLARREGRGEK 1582
K+L++I FG +A A K Y +PL + I++ L ++ ++
Sbjct: 257 KKLDKI-----FGTYTEASALKKGYTLPRPLMTNADIARIINSEEVQAVLRPAKKKPAKR 311
Query: 1583 KKKKKKKKK------------KKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKK 1630
+ +KK K KK +K ++K K +K K ++ +KK KK + K
Sbjct: 312 RVQKKNPLKNRRVRLRLNPAAKKLRKLAVLAQEKATAKGAQKVKNRRARKKAKKARLAKV 371
Query: 1631 KKKYSRE 1637
K +
Sbjct: 372 AKALYKS 378
Score = 35.4 bits (82), Expect = 0.21
Identities = 14/48 (29%), Positives = 22/48 (45%)
Query: 1582 KKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKK 1629
K +K ++K K +K K ++ +KK KK + K K K K
Sbjct: 334 KLRKLAVLAQEKATAKGAQKVKNRRARKKAKKARLAKVAKALYKSIKA 381
Score = 35.4 bits (82), Expect = 0.22
Identities = 15/49 (30%), Positives = 22/49 (44%)
Query: 1582 KKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKK 1630
KK +K ++K K +K K + +KK KK + K K K K
Sbjct: 333 KKLRKLAVLAQEKATAKGAQKVKNRRARKKAKKARLAKVAKALYKSIKA 381
Score = 35.4 bits (82), Expect = 0.26
Identities = 15/49 (30%), Positives = 23/49 (46%)
Query: 1584 KKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKK 1632
KK +K ++K K +K K ++ +KK KK + K K K K
Sbjct: 333 KKLRKLAVLAQEKATAKGAQKVKNRRARKKAKKARLAKVAKALYKSIKA 381
Score = 35.0 bits (81), Expect = 0.28
Identities = 15/49 (30%), Positives = 22/49 (44%)
Query: 1583 KKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKK 1631
KK +K ++K K +K K + +KK KK + K K K K
Sbjct: 333 KKLRKLAVLAQEKATAKGAQKVKNRRARKKAKKARLAKVAKALYKSIKA 381
Score = 34.7 bits (80), Expect = 0.43
Identities = 12/41 (29%), Positives = 20/41 (48%)
Query: 1573 LARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKK 1613
LA+ + + +K K ++ +KK KK + K K K K
Sbjct: 341 LAQEKATAKGAQKVKNRRARKKAKKARLAKVAKALYKSIKA 381
Score = 34.7 bits (80), Expect = 0.46
Identities = 14/49 (28%), Positives = 22/49 (44%)
Query: 1585 KKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
KK +K ++K K +K ++ +KK KK + K K K K
Sbjct: 333 KKLRKLAVLAQEKATAKGAQKVKNRRARKKAKKARLAKVAKALYKSIKA 381
Score = 33.9 bits (78), Expect = 0.72
Identities = 13/46 (28%), Positives = 21/46 (45%)
Query: 1575 RREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKK 1620
R+ ++K K +K K ++ +KK KK + K K K K
Sbjct: 336 RKLAVLAQEKATAKGAQKVKNRRARKKAKKARLAKVAKALYKSIKA 381
Score = 33.5 bits (77), Expect = 0.95
Identities = 13/48 (27%), Positives = 21/48 (43%)
Query: 1572 LLARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKK 1619
L + ++K K +K K ++ +KK KK + K K K K
Sbjct: 334 KLRKLAVLAQEKATAKGAQKVKNRRARKKAKKARLAKVAKALYKSIKA 381
Score = 32.7 bits (75), Expect = 1.9
Identities = 12/50 (24%), Positives = 22/50 (44%)
Query: 1574 ARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKK 1623
A++ + ++K K +K K ++ +KK K + K K K K
Sbjct: 332 AKKLRKLAVLAQEKATAKGAQKVKNRRARKKAKKARLAKVAKALYKSIKA 381
Score = 31.6 bits (72), Expect = 3.9
Identities = 12/46 (26%), Positives = 19/46 (41%)
Query: 1579 RGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKK 1624
R ++K K +K K ++ +KK K + K K K K
Sbjct: 336 RKLAVLAQEKATAKGAQKVKNRRARKKAKKARLAKVAKALYKSIKA 381
Score = 31.2 bits (71), Expect = 5.6
Identities = 13/62 (20%), Positives = 25/62 (40%), Gaps = 13/62 (20%)
Query: 1590 KKKKKKKKKKKKKKKKK-------------YKKKKKKKKKKKKKKKKKKKKKKKKKKYSR 1636
+ KKK K++ +KK KK +K ++K K +K K ++ +
Sbjct: 302 RPAKKKPAKRRVQKKNPLKNRRVRLRLNPAAKKLRKLAVLAQEKATAKGAQKVKNRRARK 361
Query: 1637 EG 1638
+
Sbjct: 362 KA 363
>gnl|CDD|227519 COG5192, BMS1, GTP-binding protein required for 40S ribosome
biogenesis [Translation, ribosomal structure and
biogenesis].
Length = 1077
Score = 41.3 bits (96), Expect = 0.005
Identities = 14/63 (22%), Positives = 37/63 (58%)
Query: 1567 SYIVDLLARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKK 1626
I D + + + +++K++ + ++ K+++ KK+K+++ + +K K+ KK+ K
Sbjct: 1015 HEIKDRIVKERIKDQEEKERMESLQRAKEEEIGKKEKEREQRIRKTIHDNYKEMAKKRLK 1074
Query: 1627 KKK 1629
KK+
Sbjct: 1075 KKR 1077
Score = 39.7 bits (92), Expect = 0.014
Identities = 19/95 (20%), Positives = 50/95 (52%), Gaps = 9/95 (9%)
Query: 1549 KIPQAWASKSYPSLKPLGSYIVDLLARRE---GRGEKKKKKK-KKKKKKKKKKKKKKKKK 1604
+P+ SK PL + +++RR E ++K + K + K++ K +++K++
Sbjct: 980 SLPREIESKL-----PLDKRSIAVVSRRIELPVPPECREKHEIKDRIVKERIKDQEEKER 1034
Query: 1605 KKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGG 1639
+ ++ K+++ KK+K+++++ +K +E
Sbjct: 1035 MESLQRAKEEEIGKKEKEREQRIRKTIHDNYKEMA 1069
Score = 39.7 bits (92), Expect = 0.015
Identities = 14/53 (26%), Positives = 34/53 (64%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
E+ K +++K++ + ++ K+++ KK K+++++ +K K+ KK+ KKK
Sbjct: 1024 ERIKDQEEKERMESLQRAKEEEIGKKEKEREQRIRKTIHDNYKEMAKKRLKKK 1076
Score = 38.2 bits (88), Expect = 0.045
Identities = 13/51 (25%), Positives = 33/51 (64%)
Query: 1582 KKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKK 1632
K +++K++ + ++ K+++ KK+K ++++ +K K+ KK+ KKK+
Sbjct: 1027 KDQEEKERMESLQRAKEEEIGKKEKEREQRIRKTIHDNYKEMAKKRLKKKR 1077
Score = 37.0 bits (85), Expect = 0.095
Identities = 12/60 (20%), Positives = 36/60 (60%)
Query: 1574 ARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
+ E + K++ K +++K++ + ++ K+++ KK+K+++++ +K K+ KK+
Sbjct: 1013 EKHEIKDRIVKERIKDQEEKERMESLQRAKEEEIGKKEKEREQRIRKTIHDNYKEMAKKR 1072
Score = 37.0 bits (85), Expect = 0.11
Identities = 12/51 (23%), Positives = 33/51 (64%)
Query: 1583 KKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
K +++K++ + ++ K+++ KK+ +++++ +K K+ KK+ KKK+
Sbjct: 1027 KDQEEKERMESLQRAKEEEIGKKEKEREQRIRKTIHDNYKEMAKKRLKKKR 1077
Score = 35.5 bits (81), Expect = 0.28
Identities = 12/55 (21%), Positives = 34/55 (61%)
Query: 1582 KKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSR 1636
K++ K +++K++ + ++ K+++ K+K+++++ +K K+ KK+ K R
Sbjct: 1023 KERIKDQEEKERMESLQRAKEEEIGKKEKEREQRIRKTIHDNYKEMAKKRLKKKR 1077
Score = 33.9 bits (77), Expect = 0.84
Identities = 11/53 (20%), Positives = 33/53 (62%)
Query: 1585 KKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSRE 1637
K++ K +++K++ + ++ K++ KK+K+++++ +K K+ KK ++
Sbjct: 1023 KERIKDQEEKERMESLQRAKEEEIGKKEKEREQRIRKTIHDNYKEMAKKRLKK 1075
Score = 33.9 bits (77), Expect = 1.0
Identities = 10/58 (17%), Positives = 34/58 (58%)
Query: 1579 RGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSR 1636
+ E K + K++ K +++K++ + ++ +++ KK+K+++++ +K K+ +
Sbjct: 1014 KHEIKDRIVKERIKDQEEKERMESLQRAKEEEIGKKEKEREQRIRKTIHDNYKEMAKK 1071
>gnl|CDD|240402 PTZ00399, PTZ00399, cysteinyl-tRNA-synthetase; Provisional.
Length = 651
Score = 41.2 bits (97), Expect = 0.005
Identities = 23/73 (31%), Positives = 44/73 (60%), Gaps = 5/73 (6%)
Query: 1563 KPLGSYIVDLLARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKK 1622
KP G + L + E +++K++K+ K++K+ +K KK++ KKKK+ +K +K K
Sbjct: 538 KPDGPSVWKLDDKEE-----LQREKEEKEALKEQKRLRKLKKQEEKKKKELEKLEKAKIP 592
Query: 1623 KKKKKKKKKKKYS 1635
+ K+++ KYS
Sbjct: 593 PAEFFKRQEDKYS 605
Score = 40.0 bits (94), Expect = 0.011
Identities = 16/55 (29%), Positives = 37/55 (67%)
Query: 1584 KKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREG 1638
K K++ +++K++K+ K++K+ +K KK+++KKKK+ +K +K K ++ +
Sbjct: 546 KLDDKEELQREKEEKEALKEQKRLRKLKKQEEKKKKELEKLEKAKIPPAEFFKRQ 600
>gnl|CDD|206228 pfam14058, PcfK, PcfK-like protein. The PcfK-like protein family
includes the Enterococcus faecalis PcfK protein, which is
functionally uncharacterized. This family of proteins is
found in bacteria and viruses. Proteins in this family
are typically between 137 and 257 amino acids in length.
There are two completely conserved residues (D and L)
that may be functionally important.
Length = 136
Score = 38.5 bits (90), Expect = 0.005
Identities = 12/58 (20%), Positives = 28/58 (48%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREG 1638
K K + + +++K + +K+ K ++++ +K +K+ KK KK +G
Sbjct: 72 IKVGKPINCRVTVNHTVELTEEEKAEARKEALKAYQQEELRKIQKRSKKSKKAEPVQG 129
Score = 37.7 bits (88), Expect = 0.012
Identities = 9/53 (16%), Positives = 25/53 (47%)
Query: 1580 GEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKK 1632
K + + +++K + + + K ++++ +K +K+ KK KK +
Sbjct: 73 KVGKPINCRVTVNHTVELTEEEKAEARKEALKAYQQEELRKIQKRSKKSKKAE 125
Score = 34.3 bits (79), Expect = 0.19
Identities = 9/52 (17%), Positives = 26/52 (50%)
Query: 1577 EGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKK 1628
G+ + + +++K + +K+ ++++ +K +K+ KK KK +
Sbjct: 74 VGKPINCRVTVNHTVELTEEEKAEARKEALKAYQQEELRKIQKRSKKSKKAE 125
Score = 33.1 bits (76), Expect = 0.42
Identities = 9/53 (16%), Positives = 24/53 (45%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
E K K + + +++ + +K+ K ++++ +K +K+ KK
Sbjct: 69 EDDIKVGKPINCRVTVNHTVELTEEEKAEARKEALKAYQQEELRKIQKRSKKS 121
Score = 33.1 bits (76), Expect = 0.43
Identities = 9/53 (16%), Positives = 25/53 (47%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
++ K K + + ++ K + +K+ K ++++ +K +K+ KK
Sbjct: 68 DEDDIKVGKPINCRVTVNHTVELTEEEKAEARKEALKAYQQEELRKIQKRSKK 120
Score = 30.4 bits (69), Expect = 3.2
Identities = 10/40 (25%), Positives = 22/40 (55%)
Query: 1567 SYIVDLLARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKK 1606
++ V+L + K+ K ++++ +K +K+ KK KK
Sbjct: 85 NHTVELTEEEKAEARKEALKAYQQEELRKIQKRSKKSKKA 124
Score = 30.0 bits (68), Expect = 4.0
Identities = 9/54 (16%), Positives = 25/54 (46%)
Query: 1583 KKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSR 1636
+ K K + + + +K + +K+ K ++++ +K +K+ K S+
Sbjct: 69 EDDIKVGKPINCRVTVNHTVELTEEEKAEARKEALKAYQQEELRKIQKRSKKSK 122
>gnl|CDD|218752 pfam05793, TFIIF_alpha, Transcription initiation factor IIF, alpha
subunit (TFIIF-alpha). Transcription initiation factor
IIF, alpha subunit (TFIIF-alpha) or RNA polymerase
II-associating protein 74 (RAP74) is the large subunit of
transcription factor IIF (TFIIF), which is essential for
accurate initiation and stimulates elongation by RNA
polymerase II.
Length = 528
Score = 40.7 bits (95), Expect = 0.006
Identities = 17/62 (27%), Positives = 31/62 (50%)
Query: 1577 EGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSR 1636
E R +K + K + ++ + ++ +++K +++ KK KK KK K KK K S
Sbjct: 298 EEREDKLSPEIPAKPEIEQDEDSEESEEEKNEEEGGLSKKGKKLKKLKGKKNGLDKDDSD 357
Query: 1637 EG 1638
G
Sbjct: 358 SG 359
Score = 39.2 bits (91), Expect = 0.017
Identities = 19/86 (22%), Positives = 32/86 (37%), Gaps = 20/86 (23%)
Query: 1577 EGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKK----------------- 1619
+ E ++ +++K +++ KK KK KK K KK K
Sbjct: 314 IEQDEDSEESEEEKNEEEGGLSKKGKKLKKLKGKKNGLDKDDSDSGDDSDDSDIDGEDSV 373
Query: 1620 ---KKKKKKKKKKKKKKYSREGGGGG 1642
KK+K+ KK++ S G
Sbjct: 374 SLVTAKKQKEPKKEEPVDSNPSSPGN 399
Score = 37.6 bits (87), Expect = 0.059
Identities = 17/70 (24%), Positives = 32/70 (45%)
Query: 1568 YIVDLLARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKK 1627
YI D A E++ K + K + ++ + ++ + +K +++ KK KK KK K
Sbjct: 286 YISDSSASGNDPEEREDKLSPEIPAKPEIEQDEDSEESEEEKNEEEGGLSKKGKKLKKLK 345
Query: 1628 KKKKKKYSRE 1637
KK +
Sbjct: 346 GKKNGLDKDD 355
Score = 36.1 bits (83), Expect = 0.19
Identities = 14/59 (23%), Positives = 28/59 (47%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGG 1639
E K + K + ++ + ++ +++ +++ KK KK KK K KK K + G
Sbjct: 301 EDKLSPEIPAKPEIEQDEDSEESEEEKNEEEGGLSKKGKKLKKLKGKKNGLDKDDSDSG 359
Score = 35.3 bits (81), Expect = 0.31
Identities = 19/70 (27%), Positives = 28/70 (40%), Gaps = 18/70 (25%)
Query: 1580 GEKKKKKKKKKKKKKKKKKKKKKKK------------------KKYKKKKKKKKKKKKKK 1621
G++ ++ + +K + K K K + K KKKKKK K KK
Sbjct: 194 GDEDEETEGEKGGGGRGKDLKIKDLEGDDEDDGDESDKGGEDGDEEKSKKKKKKLAKNKK 253
Query: 1622 KKKKKKKKKK 1631
K KK K+
Sbjct: 254 KLDDDKKGKR 263
Score = 34.2 bits (78), Expect = 0.71
Identities = 21/84 (25%), Positives = 29/84 (34%), Gaps = 18/84 (21%)
Query: 1581 EKKKKKKKKKKKKKKKKK------------------KKKKKKKKYKKKKKKKKKKKKKKK 1622
E +K + K K K ++K KKK KK K KKK KK
Sbjct: 201 EGEKGGGGRGKDLKIKDLEGDDEDDGDESDKGGEDGDEEKSKKKKKKLAKNKKKLDDDKK 260
Query: 1623 KKKKKKKKKKKYSREGGGGGEKEL 1646
K+ +Y + G +E
Sbjct: 261 GKRGGDDDADEYDSDDGDDEGREE 284
Score = 32.6 bits (74), Expect = 1.8
Identities = 16/30 (53%), Positives = 18/30 (60%)
Query: 1577 EGRGEKKKKKKKKKKKKKKKKKKKKKKKKK 1606
E E+K KKKKKK K KKK KK K+
Sbjct: 234 EDGDEEKSKKKKKKLAKNKKKLDDDKKGKR 263
Score = 32.6 bits (74), Expect = 1.8
Identities = 18/86 (20%), Positives = 27/86 (31%), Gaps = 22/86 (25%)
Query: 1577 EGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKK----------------------KKK 1614
E++K +++ KK KK KK K KK K K
Sbjct: 320 SEESEEEKNEEEGGLSKKGKKLKKLKGKKNGLDKDDSDSGDDSDDSDIDGEDSVSLVTAK 379
Query: 1615 KKKKKKKKKKKKKKKKKKKYSREGGG 1640
K+K+ KK++ S
Sbjct: 380 KQKEPKKEEPVDSNPSSPGNSGPARP 405
Score = 32.6 bits (74), Expect = 2.2
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 1577 EGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKK 1611
+G + ++K KKKKKK K KKK K K+
Sbjct: 229 SDKGGEDGDEEKSKKKKKKLAKNKKKLDDDKKGKR 263
Score = 31.9 bits (72), Expect = 3.7
Identities = 16/39 (41%), Positives = 21/39 (53%)
Query: 1577 EGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKK 1615
+G K + ++K KKKKKK K KKK KK K+
Sbjct: 225 DGDESDKGGEDGDEEKSKKKKKKLAKNKKKLDDDKKGKR 263
Score = 30.7 bits (69), Expect = 8.1
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 1576 REGRGEKKKKKKKKKKKKKKKKKKKKKKKKK 1606
+ G ++K KKKKKK K KKK KK
Sbjct: 231 KGGEDGDEEKSKKKKKKLAKNKKKLDDDKKG 261
Score = 30.7 bits (69), Expect = 8.6
Identities = 13/64 (20%), Positives = 31/64 (48%)
Query: 1570 VDLLARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKK 1629
D ++ G ++++ K + K + ++ + + +++K +++ KK KK KK
Sbjct: 284 EDYISDSSASGNDPEEREDKLSPEIPAKPEIEQDEDSEESEEEKNEEEGGLSKKGKKLKK 343
Query: 1630 KKKK 1633
K K
Sbjct: 344 LKGK 347
>gnl|CDD|233352 TIGR01310, L7, 60S ribosomal protein L7, eukaryotic. This model
describes the eukaryotic 60S (cytosolic) ribosomal
protein L7 and paralogs that may or may not also be L7.
Human, Drosophila, and Arabidopsis all have both a
typical L7 and an L7-related paralog. This family is
designated subfamily rather than equivalog to reflect
these uncharacterized paralogs. Members of this family
average ~ 250 residues in length, somewhat longer than
the archaeal L30P/L7E homolog (~ 155 residues) and much
longer than the related bacterial/organellar form (~ 60
residues).
Length = 235
Score = 40.0 bits (94), Expect = 0.006
Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 9/65 (13%)
Query: 1582 KKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKK---------KKKKKKKKKKKKKKKKK 1632
KK+K +++ + K+ K KKK K K+K K+ K +++ + K+ KK
Sbjct: 5 KKRKARQELAVQVAKQAKAKKKANKKKRKIYFKRAESFVKEYRKAEREIIRLKRLAKKPG 64
Query: 1633 KYSRE 1637
K+
Sbjct: 65 KFYVP 69
Score = 38.5 bits (90), Expect = 0.017
Identities = 19/57 (33%), Positives = 33/57 (57%)
Query: 1574 ARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKK 1630
AR+E + K+ K KKK KKK+K K+ + + K+ +K +++ + K+ KK K
Sbjct: 9 ARQELAVQVAKQAKAKKKANKKKRKIYFKRAESFVKEYRKAEREIIRLKRLAKKPGK 65
Score = 37.7 bits (88), Expect = 0.027
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 8/63 (12%)
Query: 1572 LLARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKK--------YKKKKKKKKKKKKKKKK 1623
LL +R+ R E + K+ K KKK KKK+K K Y+K +++ + K+ KK
Sbjct: 3 LLKKRKARQELAVQVAKQAKAKKKANKKKRKIYFKRAESFVKEYRKAEREIIRLKRLAKK 62
Query: 1624 KKK 1626
K
Sbjct: 63 PGK 65
Score = 36.2 bits (84), Expect = 0.095
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 1579 RGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKK-----KKKKKKKKKKKKKKKKKKKK 1633
R +++ + K+ K KKK KKK+K Y K+ + +K +++ + K+ KK K
Sbjct: 7 RKARQELAVQVAKQAKAKKKANKKKRKIYFKRAESFVKEYRKAEREIIRLKRLAKKPGKF 66
Query: 1634 Y 1634
Y
Sbjct: 67 Y 67
Score = 35.0 bits (81), Expect = 0.23
Identities = 16/49 (32%), Positives = 27/49 (55%)
Query: 1590 KKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREG 1638
KK+K +++ + K+ KKK KKK+K K+ + K+ +K RE
Sbjct: 5 KKRKARQELAVQVAKQAKAKKKANKKKRKIYFKRAESFVKEYRKAEREI 53
>gnl|CDD|204122 pfam09072, TMA7, Translation machinery associated TMA7. TMA7 plays a
role in protein translation. Deletions of the TMA7 gene
results in altered protein synthesis rates.
Length = 63
Score = 36.4 bits (84), Expect = 0.006
Identities = 20/52 (38%), Positives = 29/52 (55%)
Query: 1593 KKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGGGGEK 1644
KKK K KK+KK+ ++ K+K+K++ K K+ K K GGGG K
Sbjct: 7 KKKPLKAPKKQKKELDEEDLAFKQKQKEEAKALKELAAKAKGKGPLGGGGIK 58
Score = 35.6 bits (82), Expect = 0.014
Identities = 20/53 (37%), Positives = 30/53 (56%)
Query: 1592 KKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGGGGEK 1644
KKK K KK+KK+ ++ K+K+K++ K K+ K K GGGG +K
Sbjct: 7 KKKPLKAPKKQKKELDEEDLAFKQKQKEEAKALKELAAKAKGKGPLGGGGIKK 59
Score = 34.4 bits (79), Expect = 0.036
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 10/62 (16%)
Query: 1576 REGRGEKKKKKKKKKKKK---------KKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKK 1626
R+G G+KK K KK+KK K+K+K++ K K+ K K K KK
Sbjct: 3 RQG-GKKKPLKAPKKQKKELDEEDLAFKQKQKEEAKALKELAAKAKGKGPLGGGGIKKSG 61
Query: 1627 KK 1628
KK
Sbjct: 62 KK 63
Score = 32.9 bits (75), Expect = 0.13
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 7/59 (11%)
Query: 1580 GEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKK-------KKKKKK 1631
G KKK K KK+KK+ ++ K+K K++ K K+ K K K KK KK
Sbjct: 5 GGKKKPLKAPKKQKKELDEEDLAFKQKQKEEAKALKELAAKAKGKGPLGGGGIKKSGKK 63
Score = 31.7 bits (72), Expect = 0.32
Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 7/62 (11%)
Query: 1578 GRGEKKKKKKKKKKKKKKKK-------KKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKK 1630
GR KKK K KK+KK+ K+K+K++ K K+ K K K KK
Sbjct: 2 GRQGGKKKPLKAPKKQKKELDEEDLAFKQKQKEEAKALKELAAKAKGKGPLGGGGIKKSG 61
Query: 1631 KK 1632
KK
Sbjct: 62 KK 63
>gnl|CDD|240256 PTZ00071, PTZ00071, 40S ribosomal protein S24; Provisional.
Length = 132
Score = 38.1 bits (89), Expect = 0.007
Identities = 18/48 (37%), Positives = 27/48 (56%)
Query: 1583 KKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKK 1630
KK + K + + KKKK +K K+ K ++KK + K+K K KKK
Sbjct: 85 KKFEPKYRLIRLGLIKKKKAGRKARKELKNRRKKVRGKEKTKVSGKKK 132
Score = 37.3 bits (87), Expect = 0.012
Identities = 18/48 (37%), Positives = 28/48 (58%)
Query: 1584 KKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKK 1631
KK + K + + KKKK +K +K+ K ++KK + K+K K KKK
Sbjct: 85 KKFEPKYRLIRLGLIKKKKAGRKARKELKNRRKKVRGKEKTKVSGKKK 132
Score = 36.9 bits (86), Expect = 0.017
Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 1575 RREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKK 1614
R G KKKK +K +K+ K ++KK + K+K K KKK
Sbjct: 94 IRLGLI-KKKKAGRKARKELKNRRKKVRGKEKTKVSGKKK 132
Score = 36.5 bits (85), Expect = 0.026
Identities = 18/48 (37%), Positives = 27/48 (56%)
Query: 1586 KKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
KK + K + + KKKK K +K+ K ++KK + K+K K KKK
Sbjct: 85 KKFEPKYRLIRLGLIKKKKAGRKARKELKNRRKKVRGKEKTKVSGKKK 132
Score = 36.2 bits (84), Expect = 0.030
Identities = 17/45 (37%), Positives = 26/45 (57%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKK 1625
E K + + KKKK +K +K+ K ++KK + K+K K KKK
Sbjct: 88 EPKYRLIRLGLIKKKKAGRKARKELKNRRKKVRGKEKTKVSGKKK 132
Score = 34.6 bits (80), Expect = 0.10
Identities = 17/48 (35%), Positives = 27/48 (56%)
Query: 1585 KKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKK 1632
KK + K + + KKKK + +K+ K ++KK + K+K K KKK
Sbjct: 85 KKFEPKYRLIRLGLIKKKKAGRKARKELKNRRKKVRGKEKTKVSGKKK 132
Score = 34.2 bits (79), Expect = 0.16
Identities = 17/48 (35%), Positives = 27/48 (56%)
Query: 1582 KKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKK 1629
KK + K + + KKKK +K + + K ++KK + K+K K KKK
Sbjct: 85 KKFEPKYRLIRLGLIKKKKAGRKARKELKNRRKKVRGKEKTKVSGKKK 132
Score = 32.7 bits (75), Expect = 0.53
Identities = 15/46 (32%), Positives = 25/46 (54%)
Query: 1594 KKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGG 1639
KK + K + + KKKK +K +K+ K ++KK + K+K G
Sbjct: 85 KKFEPKYRLIRLGLIKKKKAGRKARKELKNRRKKVRGKEKTKVSGK 130
Score = 31.2 bits (71), Expect = 1.6
Identities = 14/47 (29%), Positives = 25/47 (53%)
Query: 1590 KKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSR 1636
KK + K + + KK K +K +K+ K ++KK + K+K K +
Sbjct: 85 KKFEPKYRLIRLGLIKKKKAGRKARKELKNRRKKVRGKEKTKVSGKK 131
>gnl|CDD|197700 smart00398, HMG, high mobility group.
Length = 70
Score = 36.5 bits (85), Expect = 0.007
Identities = 12/67 (17%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Query: 1563 KPLGSYIVDLLARREGRGEKKKKKKKKKKKKKKKKKKKK---KKKKKYKKKKKKKKKKKK 1619
+P+ ++++ R + + KK ++ K ++K Y++K KK K++ +
Sbjct: 4 RPMSAFMLFSQENRAKIKAENPDLSNAEISKKLGERWKLLSEEEKAPYEEKAKKDKERYE 63
Query: 1620 KKKKKKK 1626
++ + K
Sbjct: 64 EEMPEYK 70
>gnl|CDD|237744 PRK14521, rpsP, 30S ribosomal protein S16; Provisional.
Length = 186
Score = 39.0 bits (91), Expect = 0.007
Identities = 15/45 (33%), Positives = 22/45 (48%)
Query: 1580 GEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKK 1624
EK+ K KK K K KK KK + +KK + + + +KK
Sbjct: 108 EEKEGKVNAKKDKLSKAKKAAKKAALEAEKKVNEARAEAVAEKKA 152
Score = 38.6 bits (90), Expect = 0.012
Identities = 15/46 (32%), Positives = 24/46 (52%)
Query: 1587 KKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKK 1632
K++K+ K KK K K KK KK + +KK + + + +KK
Sbjct: 107 KEEKEGKVNAKKDKLSKAKKAAKKAALEAEKKVNEARAEAVAEKKA 152
Score = 38.2 bits (89), Expect = 0.013
Identities = 14/45 (31%), Positives = 23/45 (51%)
Query: 1582 KKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKK 1626
++K+ K KK K K KK KK + +KK + + + +KK
Sbjct: 108 EEKEGKVNAKKDKLSKAKKAAKKAALEAEKKVNEARAEAVAEKKA 152
Score = 38.2 bits (89), Expect = 0.013
Identities = 15/46 (32%), Positives = 24/46 (52%)
Query: 1586 KKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKK 1631
K++K+ K KK K K KK KK + +KK + + + +KK
Sbjct: 107 KEEKEGKVNAKKDKLSKAKKAAKKAALEAEKKVNEARAEAVAEKKA 152
Score = 37.8 bits (88), Expect = 0.020
Identities = 17/57 (29%), Positives = 28/57 (49%)
Query: 1577 EGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
E + E K + K++K+ K KK K K K KK + +KK + + + +KK
Sbjct: 96 EAQAEAKFEAWKEEKEGKVNAKKDKLSKAKKAAKKAALEAEKKVNEARAEAVAEKKA 152
Score = 37.4 bits (87), Expect = 0.028
Identities = 18/64 (28%), Positives = 30/64 (46%)
Query: 1582 KKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGGG 1641
K++K+ K KK K K KK KK + +KK + + + +KK + + E
Sbjct: 107 KEEKEGKVNAKKDKLSKAKKAAKKAALEAEKKVNEARAEAVAEKKAAEAAAVAAEEAAAA 166
Query: 1642 GEKE 1645
E+E
Sbjct: 167 EEEE 170
Score = 34.4 bits (79), Expect = 0.29
Identities = 14/46 (30%), Positives = 21/46 (45%)
Query: 1573 LARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKK 1618
+EG+ KK K K KK KK + +KK + + +KK
Sbjct: 107 KEEKEGKVNAKKDKLSKAKKAAKKAALEAEKKVNEARAEAVAEKKA 152
Score = 32.8 bits (75), Expect = 0.89
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 1574 ARREGRGEKKKKKKKKKKKKKKKKKKKK-KKKKKYKKKKKKKKKKKKK 1620
A +E + K KK K K KK KK + +KK + + + +KK
Sbjct: 105 AWKEEKEGKVNAKKDKLSKAKKAAKKAALEAEKKVNEARAEAVAEKKA 152
>gnl|CDD|226894 COG4499, COG4499, Predicted membrane protein [Function unknown].
Length = 434
Score = 40.5 bits (95), Expect = 0.007
Identities = 14/52 (26%), Positives = 34/52 (65%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKK 1632
+K + K + ++ + K K++K K ++ +KK+K++ + K+K++K ++KK
Sbjct: 383 KKLGEVKDETDASEEAEAKAKEEKLKQEENEKKQKEQADEDKEKRQKDERKK 434
Score = 40.5 bits (95), Expect = 0.007
Identities = 14/51 (27%), Positives = 34/51 (66%)
Query: 1583 KKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
KK + K + ++ + K K++K K+++ +KK+K++ + K+K++K ++K
Sbjct: 383 KKLGEVKDETDASEEAEAKAKEEKLKQEENEKKQKEQADEDKEKRQKDERK 433
Score = 39.4 bits (92), Expect = 0.014
Identities = 15/64 (23%), Positives = 36/64 (56%)
Query: 1562 LKPLGSYIVDLLARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKK 1621
LK + D + ++ ++ + K K++K K+++ +KK K++ + K+K++K
Sbjct: 371 LKEYNKKLQDYTKKLGEVKDETDASEEAEAKAKEEKLKQEENEKKQKEQADEDKEKRQKD 430
Query: 1622 KKKK 1625
++KK
Sbjct: 431 ERKK 434
Score = 39.4 bits (92), Expect = 0.014
Identities = 14/52 (26%), Positives = 34/52 (65%)
Query: 1582 KKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
KK + K + ++ + K K++K +++ +KK+K++ + K+K++K ++KK
Sbjct: 383 KKLGEVKDETDASEEAEAKAKEEKLKQEENEKKQKEQADEDKEKRQKDERKK 434
Score = 39.0 bits (91), Expect = 0.019
Identities = 13/52 (25%), Positives = 33/52 (63%)
Query: 1579 RGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKK 1630
+ + K + ++ + K K++K K++ +KK+K++ + K+K++K ++KK
Sbjct: 383 KKLGEVKDETDASEEAEAKAKEEKLKQEENEKKQKEQADEDKEKRQKDERKK 434
Score = 39.0 bits (91), Expect = 0.021
Identities = 16/68 (23%), Positives = 37/68 (54%)
Query: 1566 GSYIVDLLARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKK 1625
G +LL + + KK + K + ++ + K K+ K K+++ +KK+K++ +
Sbjct: 364 GDKRQELLKEYNKKLQDYTKKLGEVKDETDASEEAEAKAKEEKLKQEENEKKQKEQADED 423
Query: 1626 KKKKKKKK 1633
K+K++K +
Sbjct: 424 KEKRQKDE 431
Score = 37.9 bits (88), Expect = 0.046
Identities = 13/59 (22%), Positives = 33/59 (55%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGG 1639
+K + KK + K + ++ + K K++K K+++ +KK+K++ + K+K++
Sbjct: 376 KKLQDYTKKLGEVKDETDASEEAEAKAKEEKLKQEENEKKQKEQADEDKEKRQKDERKK 434
Score = 35.2 bits (81), Expect = 0.31
Identities = 14/60 (23%), Positives = 32/60 (53%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGG 1640
KK + KK + K + ++ + K++K K+++ +KK+K++ + K+K+ E
Sbjct: 375 NKKLQDYTKKLGEVKDETDASEEAEAKAKEEKLKQEENEKKQKEQADEDKEKRQKDERKK 434
Score = 33.6 bits (77), Expect = 0.85
Identities = 15/64 (23%), Positives = 36/64 (56%)
Query: 1574 ARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
+R+ ++ KK + KK + K + ++ + K K++K K+++ +KK+K++ + K
Sbjct: 365 DKRQELLKEYNKKLQDYTKKLGEVKDETDASEEAEAKAKEEKLKQEENEKKQKEQADEDK 424
Query: 1634 YSRE 1637
R+
Sbjct: 425 EKRQ 428
Score = 30.9 bits (70), Expect = 7.1
Identities = 14/62 (22%), Positives = 32/62 (51%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGG 1640
E KK + KK + K + ++ K K++K K+++ +KK+K++ + K+ ++
Sbjct: 373 EYNKKLQDYTKKLGEVKDETDASEEAEAKAKEEKLKQEENEKKQKEQADEDKEKRQKDER 432
Query: 1641 GG 1642
Sbjct: 433 KK 434
>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain. This domain is
found at the N terminus of SMC proteins. The SMC
(structural maintenance of chromosomes) superfamily
proteins have ATP-binding domains at the N- and
C-termini, and two extended coiled-coil domains separated
by a hinge in the middle. The eukaryotic SMC proteins
form two kind of heterodimers: the SMC1/SMC3 and the
SMC2/SMC4 types. These heterodimers constitute an
essential part of higher order complexes, which are
involved in chromatin and DNA dynamics. This family also
includes the RecF and RecN proteins that are involved in
DNA metabolism and recombination.
Length = 1162
Score = 40.7 bits (95), Expect = 0.009
Identities = 14/70 (20%), Positives = 35/70 (50%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGG 1640
EK+++ K + KK++ +++KK+ ++ ++ ++ K+ + + K + E GG
Sbjct: 986 EKEERYNKDELKKERLEEEKKELLREIIEETCQRFKEFLELFVSINRGLNKVFFYLELGG 1045
Query: 1641 GGEKELVQKN 1650
E L +
Sbjct: 1046 SAELRLEDSD 1055
Score = 35.7 bits (82), Expect = 0.24
Identities = 15/59 (25%), Positives = 30/59 (50%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGG 1639
EK+KKK++ KK ++ + + + K ++ K K++ KK + + K+K E
Sbjct: 168 EKRKKKERLKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEN 226
Score = 35.7 bits (82), Expect = 0.26
Identities = 13/57 (22%), Positives = 30/57 (52%)
Query: 1577 EGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
E ++K+KKK++ KK ++ + + ++ K ++ K K++ KK + + K
Sbjct: 161 EEAAGSREKRKKKERLKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLK 217
Score = 35.3 bits (81), Expect = 0.31
Identities = 28/172 (16%), Positives = 70/172 (40%), Gaps = 14/172 (8%)
Query: 1466 KNVRIIDELLGKFPEQFDEEAAGRKYPILYNQSMNTVLKQELIRYNRLTVIIK--KSLQE 1523
+ + + L + + + A Y + + ++ L+ + L + + LQE
Sbjct: 189 LIIDLEELKLQELKLKEQAKKALEYY---QLKEKLELEEENLLYLDYLKLNEERIDLLQE 245
Query: 1524 VRQAVKGLIVMSKELEEINTSIM-FGKIPQAWASKSYPSLKPLGSYIVDLLARREGRGEK 1582
+ + + I SK+ E I+ K + + E+
Sbjct: 246 LLRDEQEEIESSKQELEKEEEILAQVLKENKEEEKEKKLQEEELKLLAKE--------EE 297
Query: 1583 KKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKY 1634
+ K + K +++K ++K K+ + + KK +K+ KK+K++ ++ +K+ K+
Sbjct: 298 ELKSELLKLERRKVDDEEKLKESEKELKKLEKELKKEKEEIEELEKELKELE 349
Score = 31.5 bits (71), Expect = 4.5
Identities = 9/67 (13%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
Query: 1576 REGRGEKKKKKKKKKKKKKKKKKKKKKKKKK-----YKKKKKKKKKKKKKKKKKKKKKKK 1630
E + ++ K K++ KK + + K+K + ++ K +++ ++ + ++++
Sbjct: 194 EELKLQELKLKEQAKKALEYYQLKEKLELEEENLLYLDYLKLNEERIDLLQELLRDEQEE 253
Query: 1631 KKKYSRE 1637
+ +E
Sbjct: 254 IESSKQE 260
>gnl|CDD|214395 CHL00204, ycf1, Ycf1; Provisional.
Length = 1832
Score = 40.9 bits (96), Expect = 0.009
Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 1578 GRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKK--KKKKKYS 1635
G+GE + K+KK + ++K ++ Y + KK+K KK+ K + + K+Y
Sbjct: 1532 GQGELESDKEKKGNLESVLSNQEKNIEEDYAESDIKKRKNKKQYKSNTEAELDFFLKRYL 1591
Query: 1636 R 1636
R
Sbjct: 1592 R 1592
Score = 36.6 bits (85), Expect = 0.16
Identities = 11/53 (20%), Positives = 28/53 (52%)
Query: 1582 KKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKY 1634
+ +++K+ + + + K+KK + ++K ++ + KK+K KK+Y
Sbjct: 1523 RNQEEKEPAGQGELESDKEKKGNLESVLSNQEKNIEEDYAESDIKKRKNKKQY 1575
Score = 35.1 bits (81), Expect = 0.39
Identities = 12/62 (19%), Positives = 28/62 (45%), Gaps = 6/62 (9%)
Query: 1582 KKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKK------KKKKKKKKKKKKKKKKYS 1635
+ + +++K+ + + + K+KK + ++K + KK+K KK+ K
Sbjct: 1521 ENRNQEEKEPAGQGELESDKEKKGNLESVLSNQEKNIEEDYAESDIKKRKNKKQYKSNTE 1580
Query: 1636 RE 1637
E
Sbjct: 1581 AE 1582
Score = 34.7 bits (80), Expect = 0.58
Identities = 12/53 (22%), Positives = 24/53 (45%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
EK+ + + + K+KK + +K ++ + KK+K KK+ K
Sbjct: 1527 EKEPAGQGELESDKEKKGNLESVLSNQEKNIEEDYAESDIKKRKNKKQYKSNT 1579
Score = 34.3 bits (79), Expect = 0.66
Identities = 16/48 (33%), Positives = 28/48 (58%)
Query: 1586 KKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
KK + K + K ++K KKKKKK+KKK+++ K+++K +
Sbjct: 719 GLMKKIFRNWNGKDAEFKISDSVEEKTKKKKKKEKKKEEEYKREEKAR 766
Score = 34.3 bits (79), Expect = 0.72
Identities = 13/59 (22%), Positives = 29/59 (49%)
Query: 1575 RREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
E R +++K+ + + + K+KK + ++K ++ + KK+K KK+ K
Sbjct: 1519 EIENRNQEEKEPAGQGELESDKEKKGNLESVLSNQEKNIEEDYAESDIKKRKNKKQYKS 1577
Score = 34.3 bits (79), Expect = 0.78
Identities = 15/37 (40%), Positives = 27/37 (72%)
Query: 1578 GRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKK 1614
G+ + K ++K KKKKKK+KKK+++YK+++K +
Sbjct: 730 GKDAEFKISDSVEEKTKKKKKKEKKKEEEYKREEKAR 766
Score = 33.2 bits (76), Expect = 1.8
Identities = 16/48 (33%), Positives = 28/48 (58%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKK 1628
KK + K + K ++K KKKKKK+KKK+++ K+++K +
Sbjct: 719 GLMKKIFRNWNGKDAEFKISDSVEEKTKKKKKKEKKKEEEYKREEKAR 766
Score = 33.2 bits (76), Expect = 1.9
Identities = 16/48 (33%), Positives = 27/48 (56%)
Query: 1583 KKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKK 1630
KK + K + K + K KKKKKK+KKK+++ K+++K +
Sbjct: 719 GLMKKIFRNWNGKDAEFKISDSVEEKTKKKKKKEKKKEEEYKREEKAR 766
Score = 32.8 bits (75), Expect = 2.1
Identities = 16/48 (33%), Positives = 28/48 (58%)
Query: 1585 KKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKK 1632
KK + K + K ++K KKKKKK+KKK+++ K+++K +
Sbjct: 719 GLMKKIFRNWNGKDAEFKISDSVEEKTKKKKKKEKKKEEEYKREEKAR 766
Score = 32.4 bits (74), Expect = 3.2
Identities = 16/48 (33%), Positives = 27/48 (56%)
Query: 1584 KKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKK 1631
KK + K + K +K KKKKKK+KKK+++ K+++K +
Sbjct: 719 GLMKKIFRNWNGKDAEFKISDSVEEKTKKKKKKEKKKEEEYKREEKAR 766
Score = 31.6 bits (72), Expect = 4.3
Identities = 11/51 (21%), Positives = 25/51 (49%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKK 1631
+ KK +KKK +KK + + + +++K+ + + + K+KK
Sbjct: 1494 GNENVNKKINQKKKGFIPSNEKKSIEIENRNQEEKEPAGQGELESDKEKKG 1544
Score = 31.2 bits (71), Expect = 6.2
Identities = 11/50 (22%), Positives = 25/50 (50%)
Query: 1584 KKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
+ KK +KKK +KK + + + +++K+ + + + K+KK
Sbjct: 1494 GNENVNKKINQKKKGFIPSNEKKSIEIENRNQEEKEPAGQGELESDKEKK 1543
Score = 30.8 bits (70), Expect = 7.5
Identities = 16/48 (33%), Positives = 28/48 (58%)
Query: 1589 KKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSR 1636
KK + K + K ++K KKKKKK+KKK+++ K+++ +R
Sbjct: 719 GLMKKIFRNWNGKDAEFKISDSVEEKTKKKKKKEKKKEEEYKREEKAR 766
Score = 30.8 bits (70), Expect = 7.6
Identities = 15/48 (31%), Positives = 27/48 (56%)
Query: 1582 KKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKK 1629
KK + K + K ++ KKKKKK+KKK+++ K+++K +
Sbjct: 719 GLMKKIFRNWNGKDAEFKISDSVEEKTKKKKKKEKKKEEEYKREEKAR 766
Score = 30.8 bits (70), Expect = 8.2
Identities = 16/49 (32%), Positives = 28/49 (57%)
Query: 1579 RGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKK 1627
G KK + K + K ++K KKKKK+KKK+++ K+++K +
Sbjct: 718 SGLMKKIFRNWNGKDAEFKISDSVEEKTKKKKKKEKKKEEEYKREEKAR 766
Score = 30.8 bits (70), Expect = 8.4
Identities = 13/28 (46%), Positives = 22/28 (78%)
Query: 1577 EGRGEKKKKKKKKKKKKKKKKKKKKKKK 1604
+ EK KKKKKK+KKK+++ K+++K +
Sbjct: 739 DSVEEKTKKKKKKEKKKEEEYKREEKAR 766
Score = 30.8 bits (70), Expect = 9.0
Identities = 11/51 (21%), Positives = 25/51 (49%)
Query: 1583 KKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
+ KK +KKK +KK + + + +++K+ + + + K+KK
Sbjct: 1494 GNENVNKKINQKKKGFIPSNEKKSIEIENRNQEEKEPAGQGELESDKEKKG 1544
>gnl|CDD|233294 TIGR01159, DRP1, density-regulated protein DRP1. This protein family
shows weak but suggestive similarity to translation
initiation factor SUI1 and its prokaryotic homologs.
Length = 173
Score = 38.7 bits (90), Expect = 0.009
Identities = 19/78 (24%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Query: 1552 QAWASKSYPSLKPLGSYIVDLLARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKK 1611
+ W S++ P L Y D E + +++K +K +K ++ ++ KKK
Sbjct: 27 KVWLSENAPDLYA-KLYGTDSPTA-EAEAVTIGEAQEEKGEKDLLGIQKAQEAREGGKKK 84
Query: 1612 KKKKKKKKKKKKKKKKKK 1629
KK +K K++ + K+K
Sbjct: 85 KKLPQKVTIKREPRTKRK 102
>gnl|CDD|217840 pfam04006, Mpp10, Mpp10 protein. This family includes proteins
related to Mpp10 (M phase phosphoprotein 10). The U3
small nucleolar ribonucleoprotein (snoRNP) is required
for three cleavage events that generate the mature 18S
rRNA from the pre-rRNA. In Saccharomyces cerevisiae,
depletion of Mpp10, a U3 snoRNP-specific protein, halts
18S rRNA production and impairs cleavage at the three U3
snoRNP-dependent sites.
Length = 613
Score = 40.4 bits (94), Expect = 0.009
Identities = 20/72 (27%), Positives = 36/72 (50%)
Query: 1577 EGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSR 1636
+ +K K + + K ++++KKK+K++ KK K KK++K K+K KK S
Sbjct: 542 KKMKAIEKSKTELDRTDKNRERRKKKRKRRAAKKAVTKAKKERKIGKEKVDGVAKKSSSA 601
Query: 1637 EGGGGGEKELVQ 1648
E + V+
Sbjct: 602 FFAKLQETKAVE 613
Score = 35.4 bits (81), Expect = 0.30
Identities = 16/59 (27%), Positives = 29/59 (49%)
Query: 1592 KKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGGGGEKELVQKN 1650
KK K +K K + K ++++KKK+K++ KK K KK + G + + +
Sbjct: 541 YKKMKAIEKSKTELDRTDKNRERRKKKRKRRAAKKAVTKAKKERKIGKEKVDGVAKKSS 599
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional.
Length = 880
Score = 40.4 bits (95), Expect = 0.009
Identities = 15/66 (22%), Positives = 42/66 (63%)
Query: 1571 DLLARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKK 1630
+L +E E +K+ + + K+K ++K ++ +++ ++ KK+ ++ ++K K+ K+ K+K
Sbjct: 232 ELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEK 291
Query: 1631 KKKYSR 1636
++Y +
Sbjct: 292 AEEYIK 297
Score = 38.5 bits (90), Expect = 0.032
Identities = 24/140 (17%), Positives = 71/140 (50%), Gaps = 18/140 (12%)
Query: 1517 IKKSLQEVRQAVKGLIVMSKELEEINTSIMFGKIPQAWASKSYPSLKPLGSYIVD----- 1571
+++ ++E+++ ++ L KEL+E+ ++ Y L +D
Sbjct: 264 LEERIEELKKEIEELEEKVKELKELK-----------EKAEEYIKLSEFYEEYLDELREI 312
Query: 1572 --LLARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKK 1629
L+R E +++ K+ ++K+++ ++ KKK K+ +K+ ++ +++ + ++ K KK+
Sbjct: 313 EKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKE 372
Query: 1630 KKKKYSREGGGGGEKELVQK 1649
+ ++ + G ++L ++
Sbjct: 373 ELERLKKRLTGLTPEKLEKE 392
Score = 38.5 bits (90), Expect = 0.037
Identities = 29/127 (22%), Positives = 60/127 (47%), Gaps = 7/127 (5%)
Query: 1504 KQELIRYNRLTVIIKKSLQEVRQAVKGLIVMSKELEEINTSIMFGKIPQAWASKSYPSLK 1563
++EL R I L E+R+ ++ L KELEE+ I + S L+
Sbjct: 199 EKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLE 258
Query: 1564 PLGSYIVDLLARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKK 1623
+ + E R E+ KK+ ++ ++K K+ K+ K+K ++Y K + ++ + ++
Sbjct: 259 -------EKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELRE 311
Query: 1624 KKKKKKK 1630
+K+ +
Sbjct: 312 IEKRLSR 318
Score = 37.7 bits (88), Expect = 0.064
Identities = 15/84 (17%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Query: 1567 SYIVDLLARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKK 1626
+ + R E E K+K+K+ ++ ++ + + + +++ +K +K+ K+ ++ K+
Sbjct: 179 ERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKE 238
Query: 1627 K--KKKKKKYSREGGGGGEKELVQ 1648
+ + +K+ S EG +E ++
Sbjct: 239 EIEELEKELESLEGSKRKLEEKIR 262
Score = 36.6 bits (85), Expect = 0.14
Identities = 29/123 (23%), Positives = 67/123 (54%), Gaps = 2/123 (1%)
Query: 1517 IKKSLQEVRQAVKGLIVMSKELEEINTSIMFGKIPQAWASKSYPSLKPLGSYIVDLLARR 1576
+KK +E+ +A + L K LEE+ + ++ + ++ + Y L+ + LA
Sbjct: 621 LKKLEEELDKAFEELAETEKRLEELRKEL--EELEKKYSEEEYEELREEYLELSRELAGL 678
Query: 1577 EGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSR 1636
E+ +K++++ KK +K K++ ++++K KK+ +K +K ++ ++ ++K KK K +
Sbjct: 679 RAELEELEKRREEIKKTLEKLKEELEEREKAKKELEKLEKALERVEELREKVKKYKALLK 738
Query: 1637 EGG 1639
E
Sbjct: 739 ERA 741
Score = 36.2 bits (84), Expect = 0.19
Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
Query: 1565 LGSYIVDLLARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKK 1624
L Y ++ L ++ EK K+K K K + K KK+ +K ++ KKK + +KK + +++
Sbjct: 512 LKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEE 571
Query: 1625 KKKKKKKKKYSREGGGGGEKEL 1646
+ K+ E G +EL
Sbjct: 572 LAELLKE---LEELGFESVEEL 590
Score = 35.4 bits (82), Expect = 0.35
Identities = 27/130 (20%), Positives = 62/130 (47%), Gaps = 4/130 (3%)
Query: 1503 LKQELIRYNRLTVIIKKSLQEVRQAVKGLIVMSKELEEINTSIMFGKIPQAWASKSYPSL 1562
+++ L R I++ ++E+ + + L + K+L+E+ + + + Y
Sbjct: 312 IEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLE---ELEERH-ELYEEA 367
Query: 1563 KPLGSYIVDLLARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKK 1622
K + L R G +K +K+ ++ +K K++ +++ K + + KK+ K+ KK
Sbjct: 368 KAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKA 427
Query: 1623 KKKKKKKKKK 1632
++ KK K K
Sbjct: 428 IEELKKAKGK 437
Score = 34.7 bits (80), Expect = 0.54
Identities = 27/126 (21%), Positives = 60/126 (47%), Gaps = 15/126 (11%)
Query: 1521 LQEVRQAVKGLIVMSKELEEINTSIMFGKIPQAWASKSYPSLKPLGSYIVDLLARREGRG 1580
L+E+ + L + +ELE++ K L+ L I +L E
Sbjct: 206 LREINEISSELPELREELEKL--------------EKEVKELEELKEEIEELEKELESLE 251
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGG 1640
K+K ++K ++ +++ ++ KK+ ++ ++K K+ K+ K+K ++ K + ++Y +
Sbjct: 252 GSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEY-LDELR 310
Query: 1641 GGEKEL 1646
EK L
Sbjct: 311 EIEKRL 316
Score = 33.9 bits (78), Expect = 0.90
Identities = 31/148 (20%), Positives = 72/148 (48%), Gaps = 8/148 (5%)
Query: 1503 LKQELIRYNRLTVIIKKSLQEVRQAVKGLIVMSKELEEINTSIMFGKIPQAWASKSYPSL 1562
LK++ Y +L+ ++ L E+R+ K L + +E+ I I + L
Sbjct: 288 LKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERI-------KELEEKEERL 340
Query: 1563 KPLGSYIVDLLARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKK 1622
+ L + +L +R E++ + ++ K KK++ ++ KK+ +K +K+ ++ +K
Sbjct: 341 EELKKKLKELE-KRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKA 399
Query: 1623 KKKKKKKKKKKYSREGGGGGEKELVQKN 1650
K++ +++ K +R G E + ++K
Sbjct: 400 KEEIEEEISKITARIGELKKEIKELKKA 427
Score = 32.7 bits (75), Expect = 2.2
Identities = 32/140 (22%), Positives = 72/140 (51%), Gaps = 15/140 (10%)
Query: 1503 LKQELIRYNRLTVIIKKSLQEVRQAVKGLIVMSKELEEINTSIMFGKIPQAWASKSYPSL 1562
LK++LI+ +KK L+++ + K L + K+L+E+ + ++ L
Sbjct: 530 LKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEEL----------AELLKEL 579
Query: 1563 KPLGSYIVDLLARREGRGEKKKKK----KKKKKKKKKKKKKKKKKKKKYKKKKKK-KKKK 1617
+ LG V+ L R E + K +K+ ++++K+ KK +++ K ++ + +
Sbjct: 580 EELGFESVEELEERLKELEPFYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAETE 639
Query: 1618 KKKKKKKKKKKKKKKKYSRE 1637
K+ ++ +K+ ++ +KKYS E
Sbjct: 640 KRLEELRKELEELEKKYSEE 659
Score = 31.2 bits (71), Expect = 6.0
Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
Query: 772 QMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKLERAEKLIGGLGGE 831
++++L K +L + KL+ L L + + + E+ K K E E+L L G
Sbjct: 329 RIKELEEKEERLEELKKKLKELEKRLEELEERHELYEE----AKAKKEELERLKKRLTGL 384
Score = 30.8 bits (70), Expect = 8.1
Identities = 13/79 (16%), Positives = 36/79 (45%), Gaps = 6/79 (7%)
Query: 774 EKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKLERAEKLIG------G 827
E++ +L ++ G + L +++ + + +EL+ +IE ++K++ ++L
Sbjct: 238 EEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIK 297
Query: 828 LGGEKTRWSEASANLSKAL 846
L + + + K L
Sbjct: 298 LSEFYEEYLDELREIEKRL 316
>gnl|CDD|225324 COG2604, COG2604, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 594
Score = 40.4 bits (95), Expect = 0.009
Identities = 12/67 (17%), Positives = 22/67 (32%)
Query: 1584 KKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGGGGE 1643
K K K K ++K K +K KK K+ + K ++ + +
Sbjct: 453 DKDKNKPFIKLILLSNNSQEKAVLKLLQKIKKNNDFIKEFETDALKLQEILEKVDSKSEK 512
Query: 1644 KELVQKN 1650
E +
Sbjct: 513 LEKISAK 519
Score = 34.3 bits (79), Expect = 0.58
Identities = 15/61 (24%), Positives = 23/61 (37%)
Query: 1577 EGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSR 1636
EG K + K+ +K K K K K ++K K +K KK + +
Sbjct: 431 EGGARIKGTIELPFKEVCEKLLDKDKNKPFIKLILLSNNSQEKAVLKLLQKIKKNNDFIK 490
Query: 1637 E 1637
E
Sbjct: 491 E 491
>gnl|CDD|240520 cd13156, KOW_RPL6, KOW motif of Ribosomal Protein L6. RPL6 contains
KOW motif that has an extra ribosomal role as an
oncogenic. KOW domain is known as an RNA-binding motif
that is shared so far among some families of ribosomal
proteins, the essential bacterial transcriptional
elongation factor NusG, the eukaryotic chromatin
elongation factor Spt5, the higher eukaryotic KIN17
proteins and Mtr4. .
Length = 152
Score = 38.3 bits (90), Expect = 0.009
Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Query: 1585 KKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKK---KKKKKKKKKKKKKKKY 1634
K+KKKKKKKKK+ + ++KKKKY +++K+ +K KK K Y
Sbjct: 82 KRKKKKKKKKKEGEFFEEKKKKYVVSEERKEDQKAVDAALLAAIKKVPLLKGY 134
Score = 32.5 bits (75), Expect = 0.86
Identities = 14/33 (42%), Positives = 23/33 (69%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKK 1613
+KKKKKKKK+ + ++KKKK ++ K+ +K
Sbjct: 84 KKKKKKKKKEGEFFEEKKKKYVVSEERKEDQKA 116
Score = 31.4 bits (72), Expect = 1.9
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 1602 KKKKKYKKKKKKKKKKKKKKKKKKKKKKKKK 1632
K Y K+KKKKKKKKK+ + ++KKKK
Sbjct: 75 KLNDAYFKRKKKKKKKKKEGEFFEEKKKKYV 105
Score = 29.8 bits (68), Expect = 6.7
Identities = 16/28 (57%), Positives = 21/28 (75%)
Query: 1610 KKKKKKKKKKKKKKKKKKKKKKKKYSRE 1637
K+KKKKKKKKK+ + ++KKKK S E
Sbjct: 82 KRKKKKKKKKKEGEFFEEKKKKYVVSEE 109
>gnl|CDD|236698 PRK10475, PRK10475, 23S rRNA pseudouridine synthase F; Provisional.
Length = 290
Score = 39.7 bits (93), Expect = 0.010
Identities = 21/77 (27%), Positives = 31/77 (40%), Gaps = 9/77 (11%)
Query: 1561 SLK--PLGSY-------IVDLLARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKK 1611
SL PLG + ++DL E + K K K K K K+ K +K +K
Sbjct: 212 SLSGIPLGEWRDLTDDELIDLFKLIENSSSEAKPKAKAKPKTAGIKRPVVKMEKTAEKGG 271
Query: 1612 KKKKKKKKKKKKKKKKK 1628
+ K+ +KKK
Sbjct: 272 RPASNGKRFTSPGRKKK 288
Score = 38.2 bits (89), Expect = 0.031
Identities = 13/45 (28%), Positives = 18/45 (40%)
Query: 1587 KKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKK 1631
K K K K K K+ K K +K + K+ +KKK
Sbjct: 244 KPKAKAKPKTAGIKRPVVKMEKTAEKGGRPASNGKRFTSPGRKKK 288
Score = 37.4 bits (87), Expect = 0.053
Identities = 13/45 (28%), Positives = 19/45 (42%)
Query: 1588 KKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKK 1632
K K K K K K+ K +K +K + K+ +KKK
Sbjct: 244 KPKAKAKPKTAGIKRPVVKMEKTAEKGGRPASNGKRFTSPGRKKK 288
Score = 37.4 bits (87), Expect = 0.055
Identities = 13/45 (28%), Positives = 19/45 (42%)
Query: 1585 KKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKK 1629
K K K K K K+ K +K +K + K+ +KKK
Sbjct: 244 KPKAKAKPKTAGIKRPVVKMEKTAEKGGRPASNGKRFTSPGRKKK 288
Score = 36.2 bits (84), Expect = 0.12
Identities = 13/47 (27%), Positives = 19/47 (40%)
Query: 1590 KKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSR 1636
K K K K K K+ K +K +K + K+ +KK R
Sbjct: 244 KPKAKAKPKTAGIKRPVVKMEKTAEKGGRPASNGKRFTSPGRKKKGR 290
Score = 36.2 bits (84), Expect = 0.13
Identities = 12/45 (26%), Positives = 18/45 (40%)
Query: 1589 KKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
K K K K K K+ +K +K + K+ +KKK
Sbjct: 244 KPKAKAKPKTAGIKRPVVKMEKTAEKGGRPASNGKRFTSPGRKKK 288
Score = 35.5 bits (82), Expect = 0.17
Identities = 12/45 (26%), Positives = 18/45 (40%)
Query: 1586 KKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKK 1630
K K K K K K+ K + +K + K+ +KKK
Sbjct: 244 KPKAKAKPKTAGIKRPVVKMEKTAEKGGRPASNGKRFTSPGRKKK 288
Score = 32.4 bits (74), Expect = 1.7
Identities = 12/46 (26%), Positives = 18/46 (39%)
Query: 1595 KKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGG 1640
K K K K K K+ K +K +K + K+ R+ G
Sbjct: 244 KPKAKAKPKTAGIKRPVVKMEKTAEKGGRPASNGKRFTSPGRKKKG 289
>gnl|CDD|217348 pfam03064, U79_P34, HSV U79 / HCMV P34. This family represents
herpes virus protein U79 and cytomegalovirus early
phosphoprotein P34 (UL112).
Length = 238
Score = 39.5 bits (92), Expect = 0.010
Identities = 14/59 (23%), Positives = 34/59 (57%)
Query: 1586 KKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGGGGEK 1644
K +K +K+ + +KK +++K+ K+K+K++ + +K K+ ++KK + +K
Sbjct: 138 KNAEKFEKECRALSRKKSDDEHRKRSGKQKEKRRVEDSQKHKEDRRKKQEEKRRNDEDK 196
Score = 36.4 bits (84), Expect = 0.079
Identities = 19/86 (22%), Positives = 42/86 (48%)
Query: 1560 PSLKPLGSYIVDLLARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKK 1619
++ LG +E R +KK + +K+ K+K+K++ + K K+ ++KK+++
Sbjct: 129 AEIRNLGDVKNAEKFEKECRALSRKKSDDEHRKRSGKQKEKRRVEDSQKHKEDRRKKQEE 188
Query: 1620 KKKKKKKKKKKKKKYSREGGGGGEKE 1645
K++ + K+ S G G +
Sbjct: 189 KRRNDEDKRPGGGGGSSGGQSGLSTK 214
Score = 35.2 bits (81), Expect = 0.21
Identities = 14/63 (22%), Positives = 34/63 (53%)
Query: 1585 KKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGGGGEK 1644
+KK + +K+ K+K+K++ + +K K+ ++KK+++K++ + K+ GG
Sbjct: 152 RKKSDDEHRKRSGKQKEKRRVEDSQKHKEDRRKKQEEKRRNDEDKRPGGGGGSSGGQSGL 211
Query: 1645 ELV 1647
Sbjct: 212 STK 214
Score = 33.3 bits (76), Expect = 0.79
Identities = 11/62 (17%), Positives = 28/62 (45%)
Query: 1578 GRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSRE 1637
K+ K+K+K++ + +K K+ ++KK ++K++ + K+ + E
Sbjct: 157 DEHRKRSGKQKEKRRVEDSQKHKEDRRKKQEEKRRNDEDKRPGGGGGSSGGQSGLSTKDE 216
Query: 1638 GG 1639
Sbjct: 217 PP 218
Score = 33.3 bits (76), Expect = 0.86
Identities = 15/72 (20%), Positives = 38/72 (52%)
Query: 1573 LARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKK 1632
L+R++ E +K+ K+K+K++ + +K K+ ++ K+++K++ + K+ +
Sbjct: 150 LSRKKSDDEHRKRSGKQKEKRRVEDSQKHKEDRRKKQEEKRRNDEDKRPGGGGGSSGGQS 209
Query: 1633 KYSREGGGGGEK 1644
S + EK
Sbjct: 210 GLSTKDEPPKEK 221
Score = 31.8 bits (72), Expect = 2.3
Identities = 14/65 (21%), Positives = 32/65 (49%)
Query: 1585 KKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGGGGEK 1644
+K+ K+K+K++ + +K K+ +KK+++K++ + K+ + K
Sbjct: 160 RKRSGKQKEKRRVEDSQKHKEDRRKKQEEKRRNDEDKRPGGGGGSSGGQSGLSTKDEPPK 219
Query: 1645 ELVQK 1649
E QK
Sbjct: 220 EKRQK 224
>gnl|CDD|223898 COG0828, RpsU, Ribosomal protein S21 [Translation, ribosomal
structure and biogenesis].
Length = 67
Score = 36.1 bits (84), Expect = 0.010
Identities = 14/51 (27%), Positives = 34/51 (66%)
Query: 1586 KKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSR 1636
++ K+K +K+ ++ K+++ Y+K +K+K+KK +K+K K+ +K++
Sbjct: 17 RRFKRKVEKEGILREMKEREFYEKPSEKRKRKKAAARKRKFKRLRKEQQRE 67
Score = 35.8 bits (83), Expect = 0.012
Identities = 15/51 (29%), Positives = 35/51 (68%)
Query: 1587 KKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSRE 1637
++ K+K +K+ ++ K++++ +K +K+K+KK +K+K K+ +K+ RE
Sbjct: 17 RRFKRKVEKEGILREMKEREFYEKPSEKRKRKKAAARKRKFKRLRKEQQRE 67
Score = 31.1 bits (71), Expect = 0.56
Identities = 13/50 (26%), Positives = 35/50 (70%)
Query: 1582 KKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKK 1631
++ K+K +K+ ++ K+++ +K +K+K+KK +K+K K+ +K++++
Sbjct: 17 RRFKRKVEKEGILREMKEREFYEKPSEKRKRKKAAARKRKFKRLRKEQQR 66
Score = 27.7 bits (62), Expect = 8.7
Identities = 10/26 (38%), Positives = 19/26 (73%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKK 1606
EK +K+K+KK +K+K K+ +K++
Sbjct: 39 EKPSEKRKRKKAAARKRKFKRLRKEQ 64
Score = 27.7 bits (62), Expect = 9.3
Identities = 11/42 (26%), Positives = 28/42 (66%)
Query: 1576 REGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKK 1617
+EG + K+++ +K +K+K+KK +K+ K+ +K++++
Sbjct: 25 KEGILREMKEREFYEKPSEKRKRKKAAARKRKFKRLRKEQQR 66
>gnl|CDD|219547 pfam07741, BRF1, Brf1-like TBP-binding domain. This region covers
both the Brf homology II and III regions. This region is
involved in binding TATA binding protein.
Length = 95
Score = 36.9 bits (86), Expect = 0.011
Identities = 12/35 (34%), Positives = 23/35 (65%)
Query: 1593 KKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKK 1627
+++++K+ K+K + KKKKK+K KKK+ +
Sbjct: 30 EEQEEKELKQKADEGNNSGKKKKKRKAKKKRDEAG 64
Score = 36.1 bits (84), Expect = 0.016
Identities = 12/35 (34%), Positives = 23/35 (65%)
Query: 1589 KKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKK 1623
+++++K+ K+K + KKKKK+K KKK+ +
Sbjct: 30 EEQEEKELKQKADEGNNSGKKKKKRKAKKKRDEAG 64
Score = 35.7 bits (83), Expect = 0.023
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKK 1614
E+++K+ K+K + KKKKK+K KK+ +
Sbjct: 31 EQEEKELKQKADEGNNSGKKKKKRKAKKKRDEAG 64
Score = 35.3 bits (82), Expect = 0.029
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 1601 KKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYS 1635
+++++K K+K + KKKKK+K KKK+ +
Sbjct: 30 EEQEEKELKQKADEGNNSGKKKKKRKAKKKRDEAG 64
Score = 35.3 bits (82), Expect = 0.035
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 1604 KKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREG 1638
+++ +K+ K+K + KKKKK+K KKK G
Sbjct: 30 EEQEEKELKQKADEGNNSGKKKKKRKAKKKRDEAG 64
Score = 34.9 bits (81), Expect = 0.042
Identities = 11/35 (31%), Positives = 22/35 (62%)
Query: 1585 KKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKK 1619
+++++K+ K+K + KKK K+K KKK+ +
Sbjct: 30 EEQEEKELKQKADEGNNSGKKKKKRKAKKKRDEAG 64
Score = 34.5 bits (80), Expect = 0.056
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 1594 KKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKK 1628
+++++K+ K+K KKKKK+K KKK+ +
Sbjct: 30 EEQEEKELKQKADEGNNSGKKKKKRKAKKKRDEAG 64
Score = 34.5 bits (80), Expect = 0.057
Identities = 12/35 (34%), Positives = 23/35 (65%)
Query: 1595 KKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKK 1629
+++++K+ K+K + KKKKK+K KKK+ +
Sbjct: 30 EEQEEKELKQKADEGNNSGKKKKKRKAKKKRDEAG 64
Score = 34.5 bits (80), Expect = 0.058
Identities = 13/35 (37%), Positives = 23/35 (65%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKK 1615
E++++K+ K+K + KKKKK+K KKK+ +
Sbjct: 30 EEQEEKELKQKADEGNNSGKKKKKRKAKKKRDEAG 64
Score = 34.5 bits (80), Expect = 0.061
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 1598 KKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKK 1632
+++++K+ K K + KKKKK+K KKK+ +
Sbjct: 30 EEQEEKELKQKADEGNNSGKKKKKRKAKKKRDEAG 64
Score = 34.5 bits (80), Expect = 0.061
Identities = 12/35 (34%), Positives = 23/35 (65%)
Query: 1592 KKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKK 1626
+++++K+ K+K + KKKKK+K KKK+ +
Sbjct: 30 EEQEEKELKQKADEGNNSGKKKKKRKAKKKRDEAG 64
Score = 34.5 bits (80), Expect = 0.067
Identities = 12/35 (34%), Positives = 23/35 (65%)
Query: 1590 KKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKK 1624
+++++K+ K+K + KKKKK+K KKK+ +
Sbjct: 30 EEQEEKELKQKADEGNNSGKKKKKRKAKKKRDEAG 64
Score = 34.2 bits (79), Expect = 0.074
Identities = 11/35 (31%), Positives = 22/35 (62%)
Query: 1586 KKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKK 1620
+++++K+ K+K + KK KK+K KKK+ +
Sbjct: 30 EEQEEKELKQKADEGNNSGKKKKKRKAKKKRDEAG 64
Score = 34.2 bits (79), Expect = 0.089
Identities = 12/34 (35%), Positives = 23/34 (67%)
Query: 1600 KKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
+++++K+ K+K + KKKKK+K KKK+ +
Sbjct: 30 EEQEEKELKQKADEGNNSGKKKKKRKAKKKRDEA 63
Score = 34.2 bits (79), Expect = 0.095
Identities = 12/35 (34%), Positives = 23/35 (65%)
Query: 1591 KKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKK 1625
+++++K+ K+K + KKKKK+K KKK+ +
Sbjct: 30 EEQEEKELKQKADEGNNSGKKKKKRKAKKKRDEAG 64
Score = 33.4 bits (77), Expect = 0.15
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 1583 KKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKK 1617
+++++K+ K+K + KKKKK K KKK+ +
Sbjct: 30 EEQEEKELKQKADEGNNSGKKKKKRKAKKKRDEAG 64
Score = 33.4 bits (77), Expect = 0.15
Identities = 12/35 (34%), Positives = 23/35 (65%)
Query: 1596 KKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKK 1630
+++++K+ K+K + KKKKK+K KKK+ +
Sbjct: 30 EEQEEKELKQKADEGNNSGKKKKKRKAKKKRDEAG 64
Score = 33.4 bits (77), Expect = 0.18
Identities = 11/35 (31%), Positives = 22/35 (62%)
Query: 1597 KKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKK 1631
+++++K+ K+ + KKKKK+K KKK+ +
Sbjct: 30 EEQEEKELKQKADEGNNSGKKKKKRKAKKKRDEAG 64
Score = 33.0 bits (76), Expect = 0.19
Identities = 11/35 (31%), Positives = 22/35 (62%)
Query: 1584 KKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKK 1618
+++++K+ K+K + KKKK +K KKK+ +
Sbjct: 30 EEQEEKELKQKADEGNNSGKKKKKRKAKKKRDEAG 64
Score = 33.0 bits (76), Expect = 0.19
Identities = 11/35 (31%), Positives = 22/35 (62%)
Query: 1587 KKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKK 1621
+++++K+ K+K + K KKK+K KKK+ +
Sbjct: 30 EEQEEKELKQKADEGNNSGKKKKKRKAKKKRDEAG 64
Score = 33.0 bits (76), Expect = 0.21
Identities = 11/35 (31%), Positives = 20/35 (57%)
Query: 1579 RGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKK 1613
+++K+ K+K + KKKKK+K K K+ +
Sbjct: 30 EEQEEKELKQKADEGNNSGKKKKKRKAKKKRDEAG 64
Score = 33.0 bits (76), Expect = 0.24
Identities = 11/35 (31%), Positives = 22/35 (62%)
Query: 1588 KKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKK 1622
+++++K+ K+K + KKKK+K KKK+ +
Sbjct: 30 EEQEEKELKQKADEGNNSGKKKKKRKAKKKRDEAG 64
Score = 33.0 bits (76), Expect = 0.25
Identities = 11/35 (31%), Positives = 22/35 (62%)
Query: 1599 KKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
+++++K+ +K + KKKKK+K KKK+ +
Sbjct: 30 EEQEEKELKQKADEGNNSGKKKKKRKAKKKRDEAG 64
Score = 32.6 bits (75), Expect = 0.26
Identities = 11/35 (31%), Positives = 22/35 (62%)
Query: 1582 KKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKK 1616
+++++K+ K+K + KKKKK+ KKK+ +
Sbjct: 30 EEQEEKELKQKADEGNNSGKKKKKRKAKKKRDEAG 64
Score = 31.5 bits (72), Expect = 0.81
Identities = 10/35 (28%), Positives = 19/35 (54%)
Query: 1607 YKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGGG 1641
++++K+ K+K + KKKKK+K + G
Sbjct: 30 EEQEEKELKQKADEGNNSGKKKKKRKAKKKRDEAG 64
Score = 29.9 bits (68), Expect = 2.4
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 10/58 (17%)
Query: 1568 YIVDLLARREGRGEKKKKKKKKKKKKKKKKKKKKKK----------KKKYKKKKKKKK 1615
Y+ + + + + KKKKK+K KKK+ + KK +KKK KK
Sbjct: 28 YLEEQEEKELKQKADEGNNSGKKKKKRKAKKKRDEAGPASTAAEAVKKMLQKKKFSKK 85
>gnl|CDD|234707 PRK00270, rpsU, 30S ribosomal protein S21; Reviewed.
Length = 64
Score = 35.6 bits (83), Expect = 0.011
Identities = 12/46 (26%), Positives = 31/46 (67%)
Query: 1586 KKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKK 1631
++ K+K +K ++ ++++ Y+K +K+K+KK +K+++KK +
Sbjct: 17 RRFKRKVEKAGILRELRRREFYEKPSEKRKRKKAAARKRRRKKLAR 62
Score = 34.8 bits (81), Expect = 0.025
Identities = 11/46 (23%), Positives = 31/46 (67%)
Query: 1587 KKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKK 1632
++ K+K +K ++ +++++ +K +K+K+KK +K+++KK +
Sbjct: 17 RRFKRKVEKAGILRELRRREFYEKPSEKRKRKKAAARKRRRKKLAR 62
Score = 32.9 bits (76), Expect = 0.12
Identities = 12/48 (25%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Query: 1592 KKKKKKKKKKKKKKKYKKKK--KKKKKKKKKKKKKKKKKKKKKKYSRE 1637
++ K+K +K ++ ++++ +K +K+K+KK +K+++KK E
Sbjct: 17 RRFKRKVEKAGILRELRRREFYEKPSEKRKRKKAAARKRRRKKLAREE 64
Score = 30.2 bits (69), Expect = 0.93
Identities = 9/24 (37%), Positives = 17/24 (70%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKK 1604
EK +K+K+KK +K+++KK +
Sbjct: 39 EKPSEKRKRKKAAARKRRRKKLAR 62
Score = 30.2 bits (69), Expect = 1.1
Identities = 11/43 (25%), Positives = 27/43 (62%)
Query: 1584 KKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKK 1626
K+K +K ++ ++++ +K K+K+KK +K+++KK +
Sbjct: 20 KRKVEKAGILRELRRREFYEKPSEKRKRKKAAARKRRRKKLAR 62
Score = 29.8 bits (68), Expect = 1.3
Identities = 11/46 (23%), Positives = 30/46 (65%)
Query: 1582 KKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKK 1627
++ K+K +K ++ ++++ +K +K+K+KK +K+++KK +
Sbjct: 17 RRFKRKVEKAGILRELRRREFYEKPSEKRKRKKAAARKRRRKKLAR 62
Score = 29.8 bits (68), Expect = 1.4
Identities = 10/38 (26%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 1576 REGRG-EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKK 1612
+ G E ++++ +K +K+K+KK +K++ KK +
Sbjct: 25 KAGILRELRRREFYEKPSEKRKRKKAAARKRRRKKLAR 62
>gnl|CDD|222592 pfam14204, Ribosomal_L18_c, Ribosomal L18 C-terminal region. This
domain is the C-terminal end of ribosomal L18/L5
proteins.
Length = 93
Score = 36.8 bits (86), Expect = 0.011
Identities = 12/33 (36%), Positives = 22/33 (66%)
Query: 1592 KKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKK 1624
+KKK+KK+ K + K+Y KK +++K + +K
Sbjct: 61 RKKKEKKEVKAESKRYNAKKLTLEQRKARVAQK 93
Score = 35.6 bits (83), Expect = 0.023
Identities = 13/45 (28%), Positives = 24/45 (53%)
Query: 1587 KKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKK 1631
KK + +KKK+KK+ K + K+ KK +++K + +K
Sbjct: 49 KKAHAAIRADPSRKKKEKKEVKAESKRYNAKKLTLEQRKARVAQK 93
Score = 35.6 bits (83), Expect = 0.026
Identities = 11/33 (33%), Positives = 21/33 (63%)
Query: 1585 KKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKK 1617
+KKK+KK+ K + K+ KK +++K + +K
Sbjct: 61 RKKKEKKEVKAESKRYNAKKLTLEQRKARVAQK 93
Score = 34.1 bits (79), Expect = 0.077
Identities = 11/33 (33%), Positives = 21/33 (63%)
Query: 1586 KKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKK 1618
+KKK+KK+ K + K+ KK +++K + +K
Sbjct: 61 RKKKEKKEVKAESKRYNAKKLTLEQRKARVAQK 93
Score = 33.7 bits (78), Expect = 0.12
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 1583 KKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKK 1615
+KKK+KK+ K + K+ KK + +K + +K
Sbjct: 61 RKKKEKKEVKAESKRYNAKKLTLEQRKARVAQK 93
Score = 33.3 bits (77), Expect = 0.16
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 6/37 (16%)
Query: 1607 YKKKKKK------KKKKKKKKKKKKKKKKKKKKYSRE 1637
YKK +KKK+KK+ K + K+ KK + E
Sbjct: 48 YKKAHAAIRADPSRKKKEKKEVKAESKRYNAKKLTLE 84
Score = 32.9 bits (76), Expect = 0.19
Identities = 14/49 (28%), Positives = 26/49 (53%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKK 1629
E+ KK + +KKK+KK+ K + K+ KK +++K + +K
Sbjct: 45 EEMYKKAHAAIRADPSRKKKEKKEVKAESKRYNAKKLTLEQRKARVAQK 93
Score = 32.9 bits (76), Expect = 0.23
Identities = 13/45 (28%), Positives = 23/45 (51%)
Query: 1588 KKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKK 1632
KK + +KKK+KK K + K+ KK +++K + +K
Sbjct: 49 KKAHAAIRADPSRKKKEKKEVKAESKRYNAKKLTLEQRKARVAQK 93
Score = 32.5 bits (75), Expect = 0.35
Identities = 12/45 (26%), Positives = 23/45 (51%)
Query: 1586 KKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKK 1630
KK + +KKK+KK+ + K+ KK +++K + +K
Sbjct: 49 KKAHAAIRADPSRKKKEKKEVKAESKRYNAKKLTLEQRKARVAQK 93
Score = 31.4 bits (72), Expect = 0.79
Identities = 12/45 (26%), Positives = 23/45 (51%)
Query: 1589 KKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
KK + +KKK+K + K + K+ KK +++K + +K
Sbjct: 49 KKAHAAIRADPSRKKKEKKEVKAESKRYNAKKLTLEQRKARVAQK 93
>gnl|CDD|220383 pfam09756, DDRGK, DDRGK domain. This is a family of proteins of
approximately 300 residues, found in plants and
vertebrates. They contain a highly conserved DDRGK motif.
Length = 189
Score = 38.5 bits (90), Expect = 0.011
Identities = 13/66 (19%), Positives = 45/66 (68%), Gaps = 11/66 (16%)
Query: 1579 RGEKKKKKKKKKKKKKK-----------KKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKK 1627
G KK+ K ++K+ +++ +KK ++K++ + K++++ +++++KKK+++++K
Sbjct: 3 IGAKKRAKLEEKQARRQQREAEEEEREERKKLEEKREGERKEEEELEEEREKKKEEEERK 62
Query: 1628 KKKKKK 1633
+++++
Sbjct: 63 EREEQA 68
Score = 38.1 bits (89), Expect = 0.017
Identities = 13/59 (22%), Positives = 49/59 (83%)
Query: 1574 ARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKK 1632
+RE E+++++KK ++K++ ++K++++ +++ +KKK+++++K+++++ +K++++ +K
Sbjct: 19 QQREAEEEEREERKKLEEKREGERKEEEELEEEREKKKEEEERKEREEQARKEQEEYEK 77
Score = 35.8 bits (83), Expect = 0.079
Identities = 12/53 (22%), Positives = 41/53 (77%)
Query: 1585 KKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSRE 1637
KK KK+ K ++K+ ++++++ ++++++++KK ++K++ ++K++++ + RE
Sbjct: 1 KKIGAKKRAKLEEKQARRQQREAEEEEREERKKLEEKREGERKEEEELEEERE 53
Score = 35.1 bits (81), Expect = 0.16
Identities = 15/64 (23%), Positives = 55/64 (85%), Gaps = 1/64 (1%)
Query: 1574 ARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
ARR+ R E ++++++++KK ++K++ ++K++++ +++++KKK+++++K+++++ +K++++
Sbjct: 16 ARRQQR-EAEEEEREERKKLEEKREGERKEEEELEEEREKKKEEEERKEREEQARKEQEE 74
Query: 1634 YSRE 1637
Y +
Sbjct: 75 YEKL 78
Score = 34.7 bits (80), Expect = 0.19
Identities = 16/66 (24%), Positives = 48/66 (72%)
Query: 1574 ARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
A E R E+KK ++K++ ++K++++ +++++KK +++++K+++++ +K++++ +K K
Sbjct: 23 AEEEEREERKKLEEKREGERKEEEELEEEREKKKEEEERKEREEQARKEQEEYEKLKSSF 82
Query: 1634 YSREGG 1639
E G
Sbjct: 83 VVEEEG 88
Score = 33.1 bits (76), Expect = 0.62
Identities = 9/53 (16%), Positives = 42/53 (79%)
Query: 1585 KKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSRE 1637
KK+ K ++K+ ++++++ +++ ++++KK ++K++ ++K++++ +++++ +E
Sbjct: 5 AKKRAKLEEKQARRQQREAEEEEREERKKLEEKREGERKEEEELEEEREKKKE 57
Score = 33.1 bits (76), Expect = 0.68
Identities = 10/52 (19%), Positives = 41/52 (78%)
Query: 1582 KKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
KK KK+ K ++K+ ++++++ ++ +++++KK ++K++ ++K++++ ++++
Sbjct: 1 KKIGAKKRAKLEEKQARRQQREAEEEEREERKKLEEKREGERKEEEELEEER 52
>gnl|CDD|219564 pfam07771, TSGP1, Tick salivary peptide group 1. This contains a
group of peptides derived from a salivary gland cDNA
library of the tick Ixodes scapularis. Also present are
peptides from a related tick species, Ixodes ricinus.
They are characterized by a putative signal peptide
indicative of secretion and conserved cysteine residues.
Length = 120
Score = 37.2 bits (86), Expect = 0.012
Identities = 16/23 (69%), Positives = 16/23 (69%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKK 1603
EK KKKKKK KK KK KK KK
Sbjct: 98 EKPKKKKKKSKKTKKPKKSSKKD 120
Score = 36.0 bits (83), Expect = 0.029
Identities = 16/26 (61%), Positives = 17/26 (65%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKK 1606
E +K KKKKKK KK KK KK KK
Sbjct: 95 EPTEKPKKKKKKSKKTKKPKKSSKKD 120
Score = 35.6 bits (82), Expect = 0.043
Identities = 15/22 (68%), Positives = 15/22 (68%)
Query: 1608 KKKKKKKKKKKKKKKKKKKKKK 1629
K KKKKKK KK KK KK KK
Sbjct: 99 KPKKKKKKSKKTKKPKKSSKKD 120
Score = 35.6 bits (82), Expect = 0.043
Identities = 15/22 (68%), Positives = 15/22 (68%)
Query: 1609 KKKKKKKKKKKKKKKKKKKKKK 1630
K KKKKKK KK KK KK KK
Sbjct: 99 KPKKKKKKSKKTKKPKKSSKKD 120
Score = 35.6 bits (82), Expect = 0.043
Identities = 15/22 (68%), Positives = 15/22 (68%)
Query: 1610 KKKKKKKKKKKKKKKKKKKKKK 1631
K KKKKKK KK KK KK KK
Sbjct: 99 KPKKKKKKSKKTKKPKKSSKKD 120
Score = 35.6 bits (82), Expect = 0.043
Identities = 15/22 (68%), Positives = 15/22 (68%)
Query: 1611 KKKKKKKKKKKKKKKKKKKKKK 1632
K KKKKKK KK KK KK KK
Sbjct: 99 KPKKKKKKSKKTKKPKKSSKKD 120
Score = 35.6 bits (82), Expect = 0.043
Identities = 15/22 (68%), Positives = 15/22 (68%)
Query: 1612 KKKKKKKKKKKKKKKKKKKKKK 1633
K KKKKKK KK KK KK KK
Sbjct: 99 KPKKKKKKSKKTKKPKKSSKKD 120
Score = 35.2 bits (81), Expect = 0.056
Identities = 15/22 (68%), Positives = 15/22 (68%)
Query: 1606 KYKKKKKKKKKKKKKKKKKKKK 1627
K KKKKKK KK KK KK KK
Sbjct: 99 KPKKKKKKSKKTKKPKKSSKKD 120
Score = 34.1 bits (78), Expect = 0.15
Identities = 15/22 (68%), Positives = 15/22 (68%)
Query: 1599 KKKKKKKKYKKKKKKKKKKKKK 1620
K KKKKKK KK KK KK KK
Sbjct: 99 KPKKKKKKSKKTKKPKKSSKKD 120
Score = 34.1 bits (78), Expect = 0.17
Identities = 15/22 (68%), Positives = 15/22 (68%)
Query: 1596 KKKKKKKKKKKYKKKKKKKKKK 1617
K KKKKKK KK KK KK KK
Sbjct: 99 KPKKKKKKSKKTKKPKKSSKKD 120
Score = 33.7 bits (77), Expect = 0.18
Identities = 15/22 (68%), Positives = 15/22 (68%)
Query: 1593 KKKKKKKKKKKKKKYKKKKKKK 1614
K KKKKKK KK KK KK KK
Sbjct: 99 KPKKKKKKSKKTKKPKKSSKKD 120
Score = 33.7 bits (77), Expect = 0.21
Identities = 14/22 (63%), Positives = 14/22 (63%)
Query: 1604 KKKYKKKKKKKKKKKKKKKKKK 1625
K K KKKK KK KK KK KK
Sbjct: 99 KPKKKKKKSKKTKKPKKSSKKD 120
Score = 33.7 bits (77), Expect = 0.21
Identities = 14/22 (63%), Positives = 14/22 (63%)
Query: 1598 KKKKKKKKKYKKKKKKKKKKKK 1619
K KKKKKK K KK KK KK
Sbjct: 99 KPKKKKKKSKKTKKPKKSSKKD 120
Score = 33.3 bits (76), Expect = 0.24
Identities = 15/22 (68%), Positives = 15/22 (68%)
Query: 1589 KKKKKKKKKKKKKKKKKKYKKK 1610
K KKKKKK KK KK KK KK
Sbjct: 99 KPKKKKKKSKKTKKPKKSSKKD 120
Score = 33.3 bits (76), Expect = 0.24
Identities = 15/22 (68%), Positives = 15/22 (68%)
Query: 1590 KKKKKKKKKKKKKKKKKYKKKK 1611
K KKKKKK KK KK KK KK
Sbjct: 99 KPKKKKKKSKKTKKPKKSSKKD 120
Score = 33.3 bits (76), Expect = 0.29
Identities = 14/22 (63%), Positives = 14/22 (63%)
Query: 1601 KKKKKKYKKKKKKKKKKKKKKK 1622
K KKKK K KK KK KK KK
Sbjct: 99 KPKKKKKKSKKTKKPKKSSKKD 120
Score = 33.3 bits (76), Expect = 0.31
Identities = 14/22 (63%), Positives = 14/22 (63%)
Query: 1588 KKKKKKKKKKKKKKKKKKKYKK 1609
K KKKKKK KK KK KK K
Sbjct: 99 KPKKKKKKSKKTKKPKKSSKKD 120
Score = 32.9 bits (75), Expect = 0.34
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 1607 YKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
+ + +K KKKKKK KK KK KK K
Sbjct: 92 HPPEPTEKPKKKKKKSKKTKKPKKSSK 118
Score = 32.9 bits (75), Expect = 0.34
Identities = 14/22 (63%), Positives = 14/22 (63%)
Query: 1591 KKKKKKKKKKKKKKKKYKKKKK 1612
K KKKKKK KK KK K KK
Sbjct: 99 KPKKKKKKSKKTKKPKKSSKKD 120
Score = 32.9 bits (75), Expect = 0.37
Identities = 14/22 (63%), Positives = 14/22 (63%)
Query: 1597 KKKKKKKKKKYKKKKKKKKKKK 1618
K KKKKKK K KK KK KK
Sbjct: 99 KPKKKKKKSKKTKKPKKSSKKD 120
Score = 32.9 bits (75), Expect = 0.38
Identities = 14/22 (63%), Positives = 14/22 (63%)
Query: 1603 KKKKYKKKKKKKKKKKKKKKKK 1624
K KK KKK KK KK KK KK
Sbjct: 99 KPKKKKKKSKKTKKPKKSSKKD 120
Score = 32.9 bits (75), Expect = 0.40
Identities = 13/24 (54%), Positives = 14/24 (58%)
Query: 1576 REGRGEKKKKKKKKKKKKKKKKKK 1599
E +KKKK KK KK KK KK
Sbjct: 97 TEKPKKKKKKSKKTKKPKKSSKKD 120
Score = 32.9 bits (75), Expect = 0.40
Identities = 14/22 (63%), Positives = 14/22 (63%)
Query: 1592 KKKKKKKKKKKKKKKYKKKKKK 1613
K KKKKKK KK KK K KK
Sbjct: 99 KPKKKKKKSKKTKKPKKSSKKD 120
Score = 32.9 bits (75), Expect = 0.40
Identities = 14/22 (63%), Positives = 14/22 (63%)
Query: 1594 KKKKKKKKKKKKKYKKKKKKKK 1615
K KKKKKK KK K KK KK
Sbjct: 99 KPKKKKKKSKKTKKPKKSSKKD 120
Score = 32.9 bits (75), Expect = 0.44
Identities = 14/22 (63%), Positives = 14/22 (63%)
Query: 1602 KKKKKYKKKKKKKKKKKKKKKK 1623
K KKK KK KK KK KK KK
Sbjct: 99 KPKKKKKKSKKTKKPKKSSKKD 120
Score = 32.5 bits (74), Expect = 0.45
Identities = 14/22 (63%), Positives = 14/22 (63%)
Query: 1605 KKYKKKKKKKKKKKKKKKKKKK 1626
K KKKKK KK KK KK KK
Sbjct: 99 KPKKKKKKSKKTKKPKKSSKKD 120
Score = 32.5 bits (74), Expect = 0.51
Identities = 14/22 (63%), Positives = 14/22 (63%)
Query: 1600 KKKKKKKYKKKKKKKKKKKKKK 1621
K KKKKK KK KK KK KK
Sbjct: 99 KPKKKKKKSKKTKKPKKSSKKD 120
Score = 32.2 bits (73), Expect = 0.63
Identities = 14/22 (63%), Positives = 14/22 (63%)
Query: 1595 KKKKKKKKKKKKYKKKKKKKKK 1616
K KKKKKK KK K KK KK
Sbjct: 99 KPKKKKKKSKKTKKPKKSSKKD 120
Score = 31.4 bits (71), Expect = 1.5
Identities = 13/22 (59%), Positives = 15/22 (68%)
Query: 1616 KKKKKKKKKKKKKKKKKKYSRE 1637
K KKKKKK KK KK KK ++
Sbjct: 99 KPKKKKKKSKKTKKPKKSSKKD 120
>gnl|CDD|153271 cd07307, BAR, The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization
module that binds membranes and detects membrane
curvature. BAR domains are dimerization, lipid binding
and curvature sensing modules found in many different
proteins with diverse functions including organelle
biogenesis, membrane trafficking or remodeling, and cell
division and migration. Mutations in BAR containing
proteins have been linked to diseases and their
inactivation in cells leads to altered membrane dynamics.
A BAR domain with an additional N-terminal amphipathic
helix (an N-BAR) can drive membrane curvature. These
N-BAR domains are found in amphiphysins and endophilins,
among others. BAR domains are also frequently found
alongside domains that determine lipid specificity, such
as the Pleckstrin Homology (PH) and Phox Homology (PX)
domains which are present in beta centaurins (ACAPs and
ASAPs) and sorting nexins, respectively. A FES-CIP4
Homology (FCH) domain together with a coiled coil region
is called the F-BAR domain and is present in Pombe/Cdc15
homology (PCH) family proteins, which include Fes/Fes
tyrosine kinases, PACSIN or syndapin, CIP4-like proteins,
and srGAPs, among others. The Inverse (I)-BAR or
IRSp53/MIM homology Domain (IMD) is found in multi-domain
proteins, such as IRSp53 and MIM, that act as scaffolding
proteins and transducers of a variety of signaling
pathways that link membrane dynamics and the underlying
actin cytoskeleton. BAR domains form dimers that bind to
membranes, induce membrane bending and curvature, and may
also be involved in protein-protein interactions. The
I-BAR domain induces membrane protrusions in the opposite
direction compared to classical BAR and F-BAR domains,
which produce membrane invaginations. BAR domains that
also serve as protein interaction domains include those
of arfaptin and OPHN1-like proteins, among others, which
bind to Rac and Rho GAP domains, respectively.
Length = 194
Score = 38.2 bits (89), Expect = 0.015
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 10/75 (13%)
Query: 1562 LKPLGSYIVDLLARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKK 1621
++PL Y+ L K+ KK++KK K + ++K KK +KKKK K
Sbjct: 82 IEPLKEYLKKDL----------KEIKKRRKKLDKARLDYDAAREKLKKLRKKKKDSSKLA 131
Query: 1622 KKKKKKKKKKKKYSR 1636
+ +++ ++ K+KY
Sbjct: 132 EAEEELQEAKEKYEE 146
Score = 32.0 bits (73), Expect = 1.9
Identities = 17/54 (31%), Positives = 31/54 (57%)
Query: 1584 KKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSRE 1637
KK K+ KK++KK K + ++K KK +KKKK K + +++ + ++E
Sbjct: 89 LKKDLKEIKKRRKKLDKARLDYDAAREKLKKLRKKKKDSSKLAEAEEELQEAKE 142
>gnl|CDD|220102 pfam09073, BUD22, BUD22. BUD22 has been shown in yeast to be a
nuclear protein involved in bud-site selection. It plays
a role in positioning the proximal bud pole signal. More
recently it has been shown to be involved in ribosome
biogenesis.
Length = 424
Score = 39.4 bits (92), Expect = 0.016
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 8/68 (11%)
Query: 1574 ARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKK--------KKKKKKKKK 1625
A+REG K + + + ++K + K+ +K K KK K KKK K+KK
Sbjct: 353 AKREGGDAKAGRAAEPTGSRTQQKGDRPKRGEKKKPKKPSVDKPLHPSWEAKKKAKEKKA 412
Query: 1626 KKKKKKKK 1633
K + KK
Sbjct: 413 NAKFQGKK 420
Score = 39.0 bits (91), Expect = 0.020
Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 6/68 (8%)
Query: 1574 ARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKK------KKKKKKK 1627
AR+ R K + + + ++K + K+ +KKK KK K KKK K+
Sbjct: 350 ARQAKREGGDAKAGRAAEPTGSRTQQKGDRPKRGEKKKPKKPSVDKPLHPSWEAKKKAKE 409
Query: 1628 KKKKKKYS 1635
KK K+
Sbjct: 410 KKANAKFQ 417
Score = 37.9 bits (88), Expect = 0.038
Identities = 16/76 (21%), Positives = 31/76 (40%), Gaps = 11/76 (14%)
Query: 1574 ARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKK---------- 1623
R+ ++ K++ K + + + ++ + K+ +KKK KK
Sbjct: 343 GRQSEWEARQAKREGGDAKAGRAAEPTGSRTQQKGDRPKRGEKKKPKKPSVDKPLHPSWE 402
Query: 1624 -KKKKKKKKKKYSREG 1638
KKK K+KK +G
Sbjct: 403 AKKKAKEKKANAKFQG 418
Score = 37.5 bits (87), Expect = 0.052
Identities = 16/44 (36%), Positives = 25/44 (56%)
Query: 1579 RGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKK 1622
G + K KK K KKK KK KKK+ K+ K +++ + + + K
Sbjct: 140 LGIETKAKKGKAKKKTKKSKKKEAKESSDKDDEEESESEDESKS 183
Score = 37.1 bits (86), Expect = 0.076
Identities = 15/41 (36%), Positives = 24/41 (58%)
Query: 1583 KKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKK 1623
+ K KK K KKK KK KKK+ K+ K +++ + + + K
Sbjct: 143 ETKAKKGKAKKKTKKSKKKEAKESSDKDDEEESESEDESKS 183
Score = 36.7 bits (85), Expect = 0.097
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 1571 DLLARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKK 1617
D + E + +K K KKK KK KKK+ K+ K + + + + + K
Sbjct: 137 DKILGIETKAKKGKAKKKTKKSKKKEAKESSDKDDEEESESEDESKS 183
Score = 36.4 bits (84), Expect = 0.12
Identities = 16/45 (35%), Positives = 23/45 (51%)
Query: 1601 KKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGGGGEKE 1645
+ K KK K KKK KK KKK+ K+ K +++ S + E
Sbjct: 143 ETKAKKGKAKKKTKKSKKKEAKESSDKDDEEESESEDESKSEESA 187
Score = 36.0 bits (83), Expect = 0.15
Identities = 16/55 (29%), Positives = 30/55 (54%)
Query: 1591 KKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGGGGEKE 1645
+ K KK K KKK KK KK+ K+ K +++ + + + K ++ + + E+E
Sbjct: 143 ETKAKKGKAKKKTKKSKKKEAKESSDKDDEEESESEDESKSEESAEDDSDDEEEE 197
Score = 35.6 bits (82), Expect = 0.20
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 1585 KKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKK 1625
+ K KK K KKK KK KKK+ K K +++ + + + K
Sbjct: 143 ETKAKKGKAKKKTKKSKKKEAKESSDKDDEEESESEDESKS 183
Score = 35.6 bits (82), Expect = 0.21
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 7/66 (10%)
Query: 1570 VDLLARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKK-------KKKKKKKKKKK 1622
+ + GR + + ++K + K+ +KKK KK K KKK K+KK
Sbjct: 355 REGGDAKAGRAAEPTGSRTQQKGDRPKRGEKKKPKKPSVDKPLHPSWEAKKKAKEKKANA 414
Query: 1623 KKKKKK 1628
K + KK
Sbjct: 415 KFQGKK 420
Score = 35.6 bits (82), Expect = 0.24
Identities = 15/57 (26%), Positives = 27/57 (47%)
Query: 1594 KKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGGGGEKELVQKN 1650
+ K KK K KKK K KKK+ K+ K +++ + + + K + E + +
Sbjct: 143 ETKAKKGKAKKKTKKSKKKEAKESSDKDDEEESESEDESKSEESAEDDSDDEEEEDS 199
Score = 35.2 bits (81), Expect = 0.29
Identities = 15/83 (18%), Positives = 37/83 (44%), Gaps = 9/83 (10%)
Query: 1577 EGRGEKKKKKKKKKKKKKKKKKKKKKKK---KKYKKKKKKKKKKKKKKKKKKKKK----- 1628
+ + KK K+K ++ ++ ++ KKY K KK+++K++K+++ +
Sbjct: 290 DDEDIDPDQVVKKPVKRKNRRGQRARQAIWEKKYGSGAKHVKKEREKEQKEREGRQSEWE 349
Query: 1629 -KKKKKYSREGGGGGEKELVQKN 1650
++ K+ + G E
Sbjct: 350 ARQAKREGGDAKAGRAAEPTGSR 372
Score = 35.2 bits (81), Expect = 0.31
Identities = 15/41 (36%), Positives = 24/41 (58%)
Query: 1587 KKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKK 1627
+ K KK K KKK KK KKK+ K+ K +++ + + + K
Sbjct: 143 ETKAKKGKAKKKTKKSKKKEAKESSDKDDEEESESEDESKS 183
Score = 35.2 bits (81), Expect = 0.31
Identities = 15/41 (36%), Positives = 24/41 (58%)
Query: 1584 KKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKK 1624
+ K KK K KKK KK KKK+ K+ K +++ + + + K
Sbjct: 143 ETKAKKGKAKKKTKKSKKKEAKESSDKDDEEESESEDESKS 183
Score = 34.4 bits (79), Expect = 0.51
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 1588 KKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKK 1628
+ K KK K KKK KK KKK K+ K +++ + + + K
Sbjct: 143 ETKAKKGKAKKKTKKSKKKEAKESSDKDDEEESESEDESKS 183
Score = 34.0 bits (78), Expect = 0.60
Identities = 14/41 (34%), Positives = 23/41 (56%)
Query: 1586 KKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKK 1626
+ K KK K KKK KK KKK+ + K +++ + + + K
Sbjct: 143 ETKAKKGKAKKKTKKSKKKEAKESSDKDDEEESESEDESKS 183
Score = 31.0 bits (70), Expect = 5.7
Identities = 16/82 (19%), Positives = 40/82 (48%), Gaps = 6/82 (7%)
Query: 1574 ARRE------GRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKK 1627
AR+ G G K KK+++K++K+++ ++ + + ++ K++ K + + +
Sbjct: 314 ARQAIWEKKYGSGAKHVKKEREKEQKEREGRQSEWEARQAKREGGDAKAGRAAEPTGSRT 373
Query: 1628 KKKKKKYSREGGGGGEKELVQK 1649
++K + R +K V K
Sbjct: 374 QQKGDRPKRGEKKKPKKPSVDK 395
Score = 31.0 bits (70), Expect = 6.8
Identities = 16/44 (36%), Positives = 20/44 (45%)
Query: 1589 KKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKK 1632
K K + + K + K KK K KKK KK KKK+ K
Sbjct: 121 NSKPVKNVLESIMEGLDKILGIETKAKKGKAKKKTKKSKKKEAK 164
>gnl|CDD|236172 PRK08173, PRK08173, DNA topoisomerase III; Validated.
Length = 862
Score = 39.7 bits (93), Expect = 0.016
Identities = 13/48 (27%), Positives = 17/48 (35%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKK 1628
E ++ K KK K K + KK KK KK +K
Sbjct: 814 EPREPKAAAAKKTAAKATAAAATKAEKAAAKKAPAKKTAAKKTAARKT 861
Score = 38.5 bits (90), Expect = 0.039
Identities = 14/50 (28%), Positives = 19/50 (38%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKK 1630
E + ++ K KK K K +K KK KK KK +K
Sbjct: 812 EFEPREPKAAAAKKTAAKATAAAATKAEKAAAKKAPAKKTAAKKTAARKT 861
Score = 38.1 bits (89), Expect = 0.051
Identities = 13/47 (27%), Positives = 17/47 (36%)
Query: 1587 KKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
++ K KK K K +K KK KK KK +K
Sbjct: 815 PREPKAAAAKKTAAKATAAAATKAEKAAAKKAPAKKTAAKKTAARKT 861
Score = 37.7 bits (88), Expect = 0.064
Identities = 14/48 (29%), Positives = 16/48 (33%)
Query: 1577 EGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKK 1624
E R K KK K K +K K KK KK +K
Sbjct: 814 EPREPKAAAAKKTAAKATAAAATKAEKAAAKKAPAKKTAAKKTAARKT 861
Score = 37.3 bits (87), Expect = 0.070
Identities = 12/47 (25%), Positives = 16/47 (34%)
Query: 1585 KKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKK 1631
++ K KK K +K KK KK KK +K
Sbjct: 815 PREPKAAAAKKTAAKATAAAATKAEKAAAKKAPAKKTAAKKTAARKT 861
Score = 37.3 bits (87), Expect = 0.081
Identities = 13/47 (27%), Positives = 17/47 (36%)
Query: 1586 KKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKK 1632
++ K KK K K +K KK KK KK +K
Sbjct: 815 PREPKAAAAKKTAAKATAAAATKAEKAAAKKAPAKKTAAKKTAARKT 861
Score = 35.0 bits (81), Expect = 0.44
Identities = 14/48 (29%), Positives = 19/48 (39%)
Query: 1592 KKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGG 1639
++ K KK K K +K KK KK KK +R+ G
Sbjct: 815 PREPKAAAAKKTAAKATAAAATKAEKAAAKKAPAKKTAAKKTAARKTG 862
Score = 34.6 bits (80), Expect = 0.52
Identities = 13/48 (27%), Positives = 17/48 (35%)
Query: 1591 KKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREG 1638
++ K KK K K +K KK KK KK + G
Sbjct: 815 PREPKAAAAKKTAAKATAAAATKAEKAAAKKAPAKKTAAKKTAARKTG 862
Score = 34.3 bits (79), Expect = 0.77
Identities = 14/46 (30%), Positives = 17/46 (36%)
Query: 1576 REGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKK 1621
RE + KK K K +K KK KK KK +K
Sbjct: 816 REPKAAAAKKTAAKATAAAATKAEKAAAKKAPAKKTAAKKTAARKT 861
>gnl|CDD|236078 PRK07726, PRK07726, DNA topoisomerase III; Provisional.
Length = 658
Score = 39.4 bits (93), Expect = 0.016
Identities = 13/48 (27%), Positives = 17/48 (35%)
Query: 1582 KKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKK 1629
K K K K K K + + K+K KK + KKK
Sbjct: 611 PKCPDCGKPMLKVKGKNGKMLVCQDRECGKRKNVSKKTNARCPNCKKK 658
Score = 39.4 bits (93), Expect = 0.017
Identities = 13/53 (24%), Positives = 17/53 (32%)
Query: 1579 RGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKK 1631
K K K K K K ++ K+K KK + KKK
Sbjct: 606 DNLTGPKCPDCGKPMLKVKGKNGKMLVCQDRECGKRKNVSKKTNARCPNCKKK 658
Score = 37.8 bits (89), Expect = 0.051
Identities = 13/50 (26%), Positives = 18/50 (36%)
Query: 1583 KKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKK 1632
K K K K K K + ++ K+K KK + KKK
Sbjct: 609 TGPKCPDCGKPMLKVKGKNGKMLVCQDRECGKRKNVSKKTNARCPNCKKK 658
Score = 37.8 bits (89), Expect = 0.055
Identities = 13/50 (26%), Positives = 18/50 (36%)
Query: 1584 KKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
K K K K K K + ++ K+K KK + KKK
Sbjct: 609 TGPKCPDCGKPMLKVKGKNGKMLVCQDRECGKRKNVSKKTNARCPNCKKK 658
>gnl|CDD|211393 cd11381, NSA2, pre-ribosomal protein NSA2 (Nop seven-associated 2).
NSA2 appears to be a protein required for the maturation
of 27S pre-rRNA in yeast; it has been characterized in
mammalian cells as a nucleolar protein that might play a
role in the regulation of the cell cycle and in cell
proliferation.
Length = 257
Score = 38.4 bits (90), Expect = 0.020
Identities = 20/55 (36%), Positives = 35/55 (63%), Gaps = 2/55 (3%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKK--KKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
E+K+KK+ ++ K+ KK +K + K K Y KK+ K+K + KK K +++ K+K
Sbjct: 19 ERKRKKEAREPHKRSKKAQKLRGLKAKLYNKKRYKEKIQMKKTIKMHEERNVKQK 73
Score = 34.1 bits (79), Expect = 0.51
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 1575 RREGRGEKKKKKKKKKKKKKKKK---KKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKK 1629
++E R K+ KK +K + K K KK+ K+K + KK K +++ K+K K +
Sbjct: 23 KKEAREPHKRSKKAQKLRGLKAKLYNKKRYKEKIQMKKTIKMHEERNVKQKVDDKVPE 80
>gnl|CDD|218148 pfam04557, tRNA_synt_1c_R2, Glutaminyl-tRNA synthetase, non-specific
RNA binding region part 2. This is a region found N
terminal to the catalytic domain of glutaminyl-tRNA
synthetase (EC 6.1.1.18) in eukaryotes but not in
Escherichia coli. This region is thought to bind RNA in a
non-specific manner, enhancing interactions between the
tRNA and enzyme, but is not essential for enzyme
function.
Length = 83
Score = 35.4 bits (82), Expect = 0.023
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 1610 KKKKKKKKKKKKKKKKKKKKKKKKYSREGG 1639
KKKKKKKKKK + K KK + E
Sbjct: 22 LVKKKKKKKKKKAEDTAATAKAKKATAEDV 51
Score = 35.4 bits (82), Expect = 0.024
Identities = 16/38 (42%), Positives = 20/38 (52%)
Query: 1569 IVDLLARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKK 1606
I++LL + KKKKKKKKKK + K KK
Sbjct: 10 ILELLGPKTEADLVKKKKKKKKKKAEDTAATAKAKKAT 47
Score = 35.0 bits (81), Expect = 0.031
Identities = 13/26 (50%), Positives = 14/26 (53%)
Query: 1608 KKKKKKKKKKKKKKKKKKKKKKKKKK 1633
KKKKKKKKKK + K KK
Sbjct: 22 LVKKKKKKKKKKAEDTAATAKAKKAT 47
Score = 34.6 bits (80), Expect = 0.047
Identities = 14/37 (37%), Positives = 18/37 (48%)
Query: 1588 KKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKK 1624
K + KKKKKKKKKK + K KK + +
Sbjct: 17 KTEADLVKKKKKKKKKKAEDTAATAKAKKATAEDVSE 53
Score = 34.3 bits (79), Expect = 0.054
Identities = 14/37 (37%), Positives = 17/37 (45%)
Query: 1589 KKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKK 1625
K + KKKKKKKKKK K KK + +
Sbjct: 17 KTEADLVKKKKKKKKKKAEDTAATAKAKKATAEDVSE 53
Score = 34.3 bits (79), Expect = 0.060
Identities = 14/39 (35%), Positives = 18/39 (46%)
Query: 1580 GEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKK 1618
G K + KKKKKKKKKK + KK + +
Sbjct: 15 GPKTEADLVKKKKKKKKKKAEDTAATAKAKKATAEDVSE 53
Score = 34.3 bits (79), Expect = 0.065
Identities = 14/37 (37%), Positives = 18/37 (48%)
Query: 1587 KKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKK 1623
K + KKKKKKKKKK + K KK + +
Sbjct: 17 KTEADLVKKKKKKKKKKAEDTAATAKAKKATAEDVSE 53
Score = 34.3 bits (79), Expect = 0.066
Identities = 12/37 (32%), Positives = 16/37 (43%)
Query: 1608 KKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGGGGEK 1644
K + KKKKKKKKKK + K + +
Sbjct: 17 KTEADLVKKKKKKKKKKAEDTAATAKAKKATAEDVSE 53
Score = 33.9 bits (78), Expect = 0.085
Identities = 15/44 (34%), Positives = 19/44 (43%)
Query: 1595 KKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREG 1638
K + KKKKK KKKK + K KK + + EG
Sbjct: 17 KTEADLVKKKKKKKKKKAEDTAATAKAKKATAEDVSEGAMFMEG 60
Score = 33.9 bits (78), Expect = 0.094
Identities = 14/37 (37%), Positives = 18/37 (48%)
Query: 1590 KKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKK 1626
K + KKKKKKKKKK + K KK + +
Sbjct: 17 KTEADLVKKKKKKKKKKAEDTAATAKAKKATAEDVSE 53
Score = 33.5 bits (77), Expect = 0.097
Identities = 14/37 (37%), Positives = 18/37 (48%)
Query: 1584 KKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKK 1620
K + KKKKKKKKKK + K KK + +
Sbjct: 17 KTEADLVKKKKKKKKKKAEDTAATAKAKKATAEDVSE 53
Score = 33.5 bits (77), Expect = 0.11
Identities = 14/37 (37%), Positives = 18/37 (48%)
Query: 1586 KKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKK 1622
K + KKKKKKKKKK + K KK + +
Sbjct: 17 KTEADLVKKKKKKKKKKAEDTAATAKAKKATAEDVSE 53
Score = 33.5 bits (77), Expect = 0.11
Identities = 14/37 (37%), Positives = 18/37 (48%)
Query: 1585 KKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKK 1621
K + KKKKKKKKKK + K KK + +
Sbjct: 17 KTEADLVKKKKKKKKKKAEDTAATAKAKKATAEDVSE 53
Score = 33.1 bits (76), Expect = 0.15
Identities = 13/37 (35%), Positives = 17/37 (45%)
Query: 1591 KKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKK 1627
K + KKKKKKKKK + K KK + +
Sbjct: 17 KTEADLVKKKKKKKKKKAEDTAATAKAKKATAEDVSE 53
Score = 33.1 bits (76), Expect = 0.16
Identities = 13/37 (35%), Positives = 17/37 (45%)
Query: 1592 KKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKK 1628
K + KKKKKKKK K + K KK + +
Sbjct: 17 KTEADLVKKKKKKKKKKAEDTAATAKAKKATAEDVSE 53
Score = 33.1 bits (76), Expect = 0.17
Identities = 14/37 (37%), Positives = 18/37 (48%)
Query: 1583 KKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKK 1619
K + KKKKKKKKKK + K KK + +
Sbjct: 17 KTEADLVKKKKKKKKKKAEDTAATAKAKKATAEDVSE 53
Score = 32.7 bits (75), Expect = 0.19
Identities = 13/37 (35%), Positives = 17/37 (45%)
Query: 1593 KKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKK 1629
K + KKKKKKK KK + K KK + +
Sbjct: 17 KTEADLVKKKKKKKKKKAEDTAATAKAKKATAEDVSE 53
Score = 32.3 bits (74), Expect = 0.25
Identities = 13/42 (30%), Positives = 18/42 (42%)
Query: 1594 KKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYS 1635
K + KKKKKK KKK + K KK + + +
Sbjct: 17 KTEADLVKKKKKKKKKKAEDTAATAKAKKATAEDVSEGAMFM 58
Score = 31.2 bits (71), Expect = 0.66
Identities = 12/37 (32%), Positives = 17/37 (45%)
Query: 1609 KKKKKKKKKKKKKKKKKKKKKKKKKYSREGGGGGEKE 1645
K + KKKKKKKKKK + +++ E
Sbjct: 17 KTEADLVKKKKKKKKKKAEDTAATAKAKKATAEDVSE 53
>gnl|CDD|240576 cd12932, RRP7_like, RRP7 domain ribosomal RNA-processing protein 7
(Rrp7p), ribosomal RNA-processing protein 7 homolog A
(Rrp7A), and similar proteins. This CD corresponds to
the RRP7 domain of Rrp7p and Rrp7A. Rrp7p is encoded by
YCL031C gene from Saccharomyces cerevisiae. It is an
essential yeast protein involved in pre-rRNA processing
and ribosome assembly, and is speculated to be required
for correct assembly of rpS27 into the pre-ribosomal
particle. Rrp7A, also termed gastric cancer antigen Zg14,
is the Rrp7p homolog mainly found in Metazoans. The
cellular function of Rrp7A remains unclear currently.
Both Rrp7p and Rrp7A harbor an N-terminal RNA recognition
motif (RRM), also termed RBD (RNA binding domain) or RNP
(ribonucleoprotein domain), and a C-terminal RRP7 domain.
Length = 118
Score = 36.5 bits (85), Expect = 0.023
Identities = 15/46 (32%), Positives = 28/46 (60%), Gaps = 7/46 (15%)
Query: 1586 KKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKK-------KKKKKKK 1624
+ +K K +++ + K K+K KKKKKKK+ + ++KKK++
Sbjct: 58 RGGRKGKTAREEAVEAKAKEKEKKKKKKKELEDFYRFQIREKKKEE 103
Score = 35.7 bits (83), Expect = 0.040
Identities = 15/58 (25%), Positives = 34/58 (58%), Gaps = 11/58 (18%)
Query: 1587 KKKKKKKKKKKKKKK-----------KKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
K+++++K++ K+ + + +K K +++ + K K+K+KKKKKKK+ +
Sbjct: 32 KREEEEKEEAKEARNEPDEDGFVTVTRGGRKGKTAREEAVEAKAKEKEKKKKKKKELE 89
Score = 35.7 bits (83), Expect = 0.043
Identities = 20/53 (37%), Positives = 31/53 (58%), Gaps = 13/53 (24%)
Query: 1574 ARREGRGEKKKKKKKKKKKKKKKKK---------KKKKK----KKKYKKKKKK 1613
RE E K K+K+KKKKKKK+ + KKK++ +KK+++ KK+
Sbjct: 65 TAREEAVEAKAKEKEKKKKKKKELEDFYRFQIREKKKEELAELRKKFEEDKKR 117
Score = 35.3 bits (82), Expect = 0.051
Identities = 20/58 (34%), Positives = 41/58 (70%)
Query: 1575 RREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKK 1632
R+G+ +++ + K K+K+KKKKKKK+ + Y+ + ++KKK++ + +KK ++ KK+
Sbjct: 60 GRKGKTAREEAVEAKAKEKEKKKKKKKELEDFYRFQIREKKKEELAELRKKFEEDKKR 117
Score = 34.9 bits (81), Expect = 0.069
Identities = 18/60 (30%), Positives = 36/60 (60%), Gaps = 11/60 (18%)
Query: 1585 KKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKK-------KKKKKKK----KKKKKKKKKK 1633
+ +K K +++ + K K+K+ KKKKKK+ + ++KKK++ +KK ++ KK+
Sbjct: 58 RGGRKGKTAREEAVEAKAKEKEKKKKKKKELEDFYRFQIREKKKEELAELRKKFEEDKKR 117
Score = 33.0 bits (76), Expect = 0.32
Identities = 18/60 (30%), Positives = 36/60 (60%), Gaps = 11/60 (18%)
Query: 1583 KKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKK-------KKKKKKK----KKKKKKKKKK 1631
+ +K K +++ + K K+K+KK KKKK+ + ++KKK++ +KK ++ KK+
Sbjct: 58 RGGRKGKTAREEAVEAKAKEKEKKKKKKKELEDFYRFQIREKKKEELAELRKKFEEDKKR 117
Score = 31.8 bits (73), Expect = 0.72
Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 9/56 (16%)
Query: 1574 ARREGRGEKKKKKKKKKKKKKKKKKKKK---------KKKKKYKKKKKKKKKKKKK 1620
+ R E + K K+K+KKKKKKK+ + KKK++ + +KK ++ KK+
Sbjct: 62 KGKTAREEAVEAKAKEKEKKKKKKKELEDFYRFQIREKKKEELAELRKKFEEDKKR 117
>gnl|CDD|219392 pfam07382, HC2, Histone H1-like nucleoprotein HC2. This family
contains the bacterial histone H1-like nucleoprotein HC2
(approximately 200 residues long), which seems to be
found mostly in Chlamydia. HC2 functions in DNA
condensation, although it has been suggested that it also
has other roles.
Length = 187
Score = 37.4 bits (86), Expect = 0.025
Identities = 20/56 (35%), Positives = 23/56 (41%)
Query: 1582 KKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSRE 1637
KK +K KK KK KK K KK KK KK KK KK + +
Sbjct: 41 KKPAARKTVAKKTVAAKKPAAKKAAKKAVAKKVVAKKPVAKKAVAKKATAKKVAAK 96
Score = 36.7 bits (84), Expect = 0.053
Identities = 22/59 (37%), Positives = 24/59 (40%)
Query: 1574 ARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKK 1632
AR+ + KK KK KK KK KK KK KK KK KK KK
Sbjct: 45 ARKTVAKKTVAAKKPAAKKAAKKAVAKKVVAKKPVAKKAVAKKATAKKVAAKKVVAKKT 103
Score = 36.7 bits (84), Expect = 0.054
Identities = 22/58 (37%), Positives = 25/58 (43%)
Query: 1574 ARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKK 1631
A ++ +K KK KK KK KK KK KK KK KK KK KK
Sbjct: 55 AAKKPAAKKAAKKAVAKKVVAKKPVAKKAVAKKATAKKVAAKKVVAKKTVAKKAAAKK 112
Score = 36.3 bits (83), Expect = 0.067
Identities = 22/57 (38%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
Query: 1583 KKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKK--KKKKKKKKKYSRE 1637
KK KK KK KK KK KK KK KK KK KK KK +++
Sbjct: 56 AKKPAAKKAAKKAVAKKVVAKKPVAKKAVAKKATAKKVAAKKVVAKKTVAKKAAAKK 112
Score = 36.3 bits (83), Expect = 0.071
Identities = 20/52 (38%), Positives = 21/52 (40%)
Query: 1582 KKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
+K KK KK KK KK K KK KK KK KK KK
Sbjct: 46 RKTVAKKTVAAKKPAAKKAAKKAVAKKVVAKKPVAKKAVAKKATAKKVAAKK 97
Score = 35.9 bits (82), Expect = 0.078
Identities = 20/52 (38%), Positives = 22/52 (42%)
Query: 1582 KKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
+K KK +K KK KK KK KK KK KK KK KK
Sbjct: 36 RKVAAKKPAARKTVAKKTVAAKKPAAKKAAKKAVAKKVVAKKPVAKKAVAKK 87
Score = 35.9 bits (82), Expect = 0.091
Identities = 21/52 (40%), Positives = 21/52 (40%)
Query: 1582 KKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
KK KK KK KK KK K KK KK KK KK KK
Sbjct: 51 KKTVAAKKPAAKKAAKKAVAKKVVAKKPVAKKAVAKKATAKKVAAKKVVAKK 102
Score = 35.9 bits (82), Expect = 0.096
Identities = 20/56 (35%), Positives = 23/56 (41%)
Query: 1582 KKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSRE 1637
K KK KK KK KK K KK KK KK KK KK +++
Sbjct: 47 KTVAKKTVAAKKPAAKKAAKKAVAKKVVAKKPVAKKAVAKKATAKKVAAKKVVAKK 102
Score = 35.5 bits (81), Expect = 0.10
Identities = 20/52 (38%), Positives = 22/52 (42%)
Query: 1582 KKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
KK +K KK +K KK KK KK KK KK KK KK
Sbjct: 31 KKTVVRKVAAKKPAARKTVAKKTVAAKKPAAKKAAKKAVAKKVVAKKPVAKK 82
Score = 35.5 bits (81), Expect = 0.12
Identities = 21/52 (40%), Positives = 21/52 (40%)
Query: 1582 KKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
KK KK KK KK KK K KK KK KK KK KK
Sbjct: 56 AKKPAAKKAAKKAVAKKVVAKKPVAKKAVAKKATAKKVAAKKVVAKKTVAKK 107
Score = 35.1 bits (80), Expect = 0.14
Identities = 20/64 (31%), Positives = 27/64 (42%)
Query: 1574 ARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
A R+ +K KK +K KK +K K KK KK KK KK KK
Sbjct: 19 AVRKPAAKKAAAKKTVVRKVAAKKPAARKTVAKKTVAAKKPAAKKAAKKAVAKKVVAKKP 78
Query: 1634 YSRE 1637
+++
Sbjct: 79 VAKK 82
Score = 35.1 bits (80), Expect = 0.16
Identities = 21/52 (40%), Positives = 22/52 (42%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKK 1632
+K KK KK KK KK KK KK KK KK KK KK
Sbjct: 57 KKPAAKKAAKKAVAKKVVAKKPVAKKAVAKKATAKKVAAKKVVAKKTVAKKA 108
Score = 34.7 bits (79), Expect = 0.19
Identities = 21/58 (36%), Positives = 24/58 (41%)
Query: 1574 ARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKK 1631
A ++ + KK KK KK KK KK KK KK KK KK KK
Sbjct: 60 AAKKAAKKAVAKKVVAKKPVAKKAVAKKATAKKVAAKKVVAKKTVAKKAAAKKPAAKK 117
Score = 34.7 bits (79), Expect = 0.20
Identities = 21/52 (40%), Positives = 21/52 (40%)
Query: 1582 KKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
KK KK KK KK KK K KK KK KK KK KK
Sbjct: 61 AKKAAKKAVAKKVVAKKPVAKKAVAKKATAKKVAAKKVVAKKTVAKKAAAKK 112
Score = 34.7 bits (79), Expect = 0.20
Identities = 22/60 (36%), Positives = 24/60 (40%)
Query: 1574 ARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
A R+ +K KK KK KK KK K KK KK KK KK KK
Sbjct: 44 AARKTVAKKTVAAKKPAAKKAAKKAVAKKVVAKKPVAKKAVAKKATAKKVAAKKVVAKKT 103
Score = 34.4 bits (78), Expect = 0.28
Identities = 19/56 (33%), Positives = 23/56 (41%)
Query: 1582 KKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSRE 1637
K KK +K KK KK K KK KK KK KK KK +++
Sbjct: 37 KVAAKKPAARKTVAKKTVAAKKPAAKKAAKKAVAKKVVAKKPVAKKAVAKKATAKK 92
Score = 34.4 bits (78), Expect = 0.30
Identities = 20/59 (33%), Positives = 23/59 (38%)
Query: 1574 ARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKK 1632
R+ +K +K KK KK KK K KK KK KK KK KK
Sbjct: 34 VVRKVAAKKPAARKTVAKKTVAAKKPAAKKAAKKAVAKKVVAKKPVAKKAVAKKATAKK 92
Score = 34.0 bits (77), Expect = 0.35
Identities = 21/51 (41%), Positives = 21/51 (41%)
Query: 1583 KKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
KK KK KK KK KK KK KK KK KK KK K
Sbjct: 66 KKAVAKKVVAKKPVAKKAVAKKATAKKVAAKKVVAKKTVAKKAAAKKPAAK 116
Score = 33.6 bits (76), Expect = 0.51
Identities = 21/55 (38%), Positives = 23/55 (41%)
Query: 1582 KKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSR 1636
KK KK KK KK KK K KK KK KK KK KK ++
Sbjct: 62 KKAAKKAVAKKVVAKKPVAKKAVAKKATAKKVAAKKVVAKKTVAKKAAAKKPAAK 116
Score = 33.6 bits (76), Expect = 0.56
Identities = 21/52 (40%), Positives = 21/52 (40%)
Query: 1582 KKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
KK KK KK KK KK K KK KK KK KK KK
Sbjct: 66 KKAVAKKVVAKKPVAKKAVAKKATAKKVAAKKVVAKKTVAKKAAAKKPAAKK 117
Score = 33.2 bits (75), Expect = 0.64
Identities = 21/65 (32%), Positives = 26/65 (40%), Gaps = 8/65 (12%)
Query: 1580 GEKKKKKKKKKKKKKKKKKKKKKKKKKYKK--------KKKKKKKKKKKKKKKKKKKKKK 1631
G +KK+ KK KK +K KK KK KK +K KK KK K
Sbjct: 3 GAQKKRSSKKTAAKKAAVRKPAAKKAAAKKTVVRKVAAKKPAARKTVAKKTVAAKKPAAK 62
Query: 1632 KKYSR 1636
K +
Sbjct: 63 KAAKK 67
Score = 32.8 bits (74), Expect = 0.91
Identities = 21/55 (38%), Positives = 22/55 (40%)
Query: 1579 RGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
+ KK KK KK KK KK KK KK KK KK KK K
Sbjct: 67 KAVAKKVVAKKPVAKKAVAKKATAKKVAAKKVVAKKTVAKKAAAKKPAAKKAVAK 121
Score = 32.1 bits (72), Expect = 1.4
Identities = 20/57 (35%), Positives = 22/57 (38%)
Query: 1574 ARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKK 1630
+ + KK KK KK KK KK KK KK KK KK KK
Sbjct: 66 KKAVAKKVVAKKPVAKKAVAKKATAKKVAAKKVVAKKTVAKKAAAKKPAAKKAVAKK 122
Score = 32.1 bits (72), Expect = 1.5
Identities = 21/58 (36%), Positives = 24/58 (41%)
Query: 1574 ARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKK 1631
A++ + KK KK KK KK KK KK KK KK KK KK
Sbjct: 65 AKKAVAKKVVAKKPVAKKAVAKKATAKKVAAKKVVAKKTVAKKAAAKKPAAKKAVAKK 122
Score = 32.1 bits (72), Expect = 1.7
Identities = 20/67 (29%), Positives = 27/67 (40%)
Query: 1583 KKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGGGG 1642
KK +K KK KK +K KK +K KK KK KK K +
Sbjct: 16 KKAAVRKPAAKKAAAKKTVVRKVAAKKPAARKTVAKKTVAAKKPAAKKAAKKAVAKKVVA 75
Query: 1643 EKELVQK 1649
+K + +K
Sbjct: 76 KKPVAKK 82
Score = 31.7 bits (71), Expect = 1.9
Identities = 18/57 (31%), Positives = 23/57 (40%)
Query: 1575 RREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKK 1631
+R + KK +K KK KK +K KK +K KK KK KK
Sbjct: 7 KRSSKKTAAKKAAVRKPAAKKAAAKKTVVRKVAAKKPAARKTVAKKTVAAKKPAAKK 63
Score = 31.3 bits (70), Expect = 2.9
Identities = 18/62 (29%), Positives = 23/62 (37%)
Query: 1574 ARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
A++ + KK KK KK KK KK +K KK KK K K
Sbjct: 90 AKKVAAKKVVAKKTVAKKAAAKKPAAKKAVAKKAVARKPAAKKAVAKKAASTCHKNHKHT 149
Query: 1634 YS 1635
+
Sbjct: 150 AA 151
Score = 30.9 bits (69), Expect = 4.2
Identities = 20/51 (39%), Positives = 21/51 (41%)
Query: 1583 KKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
KK KK KK KK KK KK KK KK +K KK K
Sbjct: 86 KKATAKKVAAKKVVAKKTVAKKAAAKKPAAKKAVAKKAVARKPAAKKAVAK 136
Score = 30.1 bits (67), Expect = 7.0
Identities = 20/52 (38%), Positives = 21/52 (40%)
Query: 1582 KKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
KK KK KK KK KK K KK KK +K KK KK
Sbjct: 86 KKATAKKVAAKKVVAKKTVAKKAAAKKPAAKKAVAKKAVARKPAAKKAVAKK 137
Score = 30.1 bits (67), Expect = 7.2
Identities = 20/52 (38%), Positives = 21/52 (40%)
Query: 1582 KKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
KK KK KK KK KK K KK KK KK +K KK
Sbjct: 81 KKAVAKKATAKKVAAKKVVAKKTVAKKAAAKKPAAKKAVAKKAVARKPAAKK 132
Score = 29.7 bits (66), Expect = 8.5
Identities = 16/53 (30%), Positives = 23/53 (43%)
Query: 1585 KKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSRE 1637
+KK+ KK KK +K K KK +K KK +K KK + +
Sbjct: 5 QKKRSSKKTAAKKAAVRKPAAKKAAAKKTVVRKVAAKKPAARKTVAKKTVAAK 57
>gnl|CDD|240377 PTZ00352, PTZ00352, 60S ribosomal protein L13; Provisional.
Length = 212
Score = 37.8 bits (88), Expect = 0.026
Identities = 15/68 (22%), Positives = 28/68 (41%), Gaps = 10/68 (14%)
Query: 1576 REGRGEKKKKKKKKKKKKKKKKKKKK----------KKKKKYKKKKKKKKKKKKKKKKKK 1625
+E K+ K + ++ K+ + Y+ ++ K K KK+K
Sbjct: 144 KEEVVALPVKQNKNSEVIPFQRTPKREKARVITKEERAFNAYRTLRQAKLNAKFVGKKEK 203
Query: 1626 KKKKKKKK 1633
KK+ K+KK
Sbjct: 204 KKQAKEKK 211
Score = 32.8 bits (75), Expect = 1.2
Identities = 14/45 (31%), Positives = 26/45 (57%)
Query: 1582 KKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKK 1626
K++K + K+++ + ++ K K KK+KKK+ K+KKK
Sbjct: 168 KREKARVITKEERAFNAYRTLRQAKLNAKFVGKKEKKKQAKEKKK 212
Score = 32.4 bits (74), Expect = 1.3
Identities = 14/46 (30%), Positives = 26/46 (56%)
Query: 1583 KKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKK 1628
K++K + K+++ + ++ K K KK+KKK+ K+KKK
Sbjct: 167 PKREKARVITKEERAFNAYRTLRQAKLNAKFVGKKEKKKQAKEKKK 212
Score = 32.0 bits (73), Expect = 1.9
Identities = 13/49 (26%), Positives = 26/49 (53%)
Query: 1579 RGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKK 1627
+ K++K + K+++ + ++ K KK+KKK+ K+KKK
Sbjct: 164 QRTPKREKARVITKEERAFNAYRTLRQAKLNAKFVGKKEKKKQAKEKKK 212
Score = 30.8 bits (70), Expect = 4.9
Identities = 10/60 (16%), Positives = 26/60 (43%)
Query: 1574 ARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
++ E K+ K + ++ K++K + K+++ + ++ K K KK+
Sbjct: 143 SKEEVVALPVKQNKNSEVIPFQRTPKREKARVITKEERAFNAYRTLRQAKLNAKFVGKKE 202
>gnl|CDD|227492 COG5163, NOP7, Protein required for biogenesis of the 60S ribosomal
subunit [Translation, ribosomal structure and
biogenesis].
Length = 591
Score = 38.9 bits (90), Expect = 0.027
Identities = 25/65 (38%), Positives = 38/65 (58%), Gaps = 8/65 (12%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKK-----KKKKKYKKKKKKKKKKKKKK---KKKKKKKKKKK 1632
K K KK+K +++++KK K K+KK YKK K KK+++ KKKKK+ K+K
Sbjct: 526 NKSKNKKRKVDEEEEEKKLKMIMMSNKQKKLYKKMKYSNAKKEEQAENLKKKKKQIAKQK 585
Query: 1633 KYSRE 1637
K +
Sbjct: 586 KLDSK 590
Score = 37.0 bits (85), Expect = 0.11
Identities = 22/65 (33%), Positives = 35/65 (53%)
Query: 1571 DLLARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKK 1630
+L A++E E + K + + K K K KK+K +++++KK K K+KK K
Sbjct: 499 ELQAQKELELEAQGIKYSETSEADKDVNKSKNKKRKVDEEEEEKKLKMIMMSNKQKKLYK 558
Query: 1631 KKKYS 1635
K KYS
Sbjct: 559 KMKYS 563
Score = 35.1 bits (80), Expect = 0.33
Identities = 21/64 (32%), Positives = 36/64 (56%), Gaps = 4/64 (6%)
Query: 1574 ARREGRGEKKKKKKKKKKKKKK----KKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKK 1629
+ ++K +++++KK K K+KK KK KY KK+++ + KKKKK+ K+
Sbjct: 525 VNKSKNKKRKVDEEEEEKKLKMIMMSNKQKKLYKKMKYSNAKKEEQAENLKKKKKQIAKQ 584
Query: 1630 KKKK 1633
KK
Sbjct: 585 KKLD 588
Score = 35.1 bits (80), Expect = 0.38
Identities = 23/60 (38%), Positives = 34/60 (56%), Gaps = 6/60 (10%)
Query: 1575 RREGRGEKKKKKKK------KKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKK 1628
+R+ E+++KK K K+KK KK K KK++ + KKKKK+ K+KK KK
Sbjct: 532 KRKVDEEEEEKKLKMIMMSNKQKKLYKKMKYSNAKKEEQAENLKKKKKQIAKQKKLDSKK 591
Score = 34.3 bits (78), Expect = 0.61
Identities = 17/55 (30%), Positives = 28/55 (50%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYS 1635
E + K K K KK+K +++++K K K+KK KK K KK++ +
Sbjct: 517 ETSEADKDVNKSKNKKRKVDEEEEEKKLKMIMMSNKQKKLYKKMKYSNAKKEEQA 571
>gnl|CDD|177089 CHL00189, infB, translation initiation factor 2; Provisional.
Length = 742
Score = 38.7 bits (90), Expect = 0.027
Identities = 26/83 (31%), Positives = 31/83 (37%), Gaps = 28/83 (33%)
Query: 1581 EKKKKKKKKKKKKKKK----------------------------KKKKKKKKKKYKKKKK 1612
+ KK K K+KKK KKK +K K K +K KKK
Sbjct: 71 DSKKTKLKQKKKIKKKLHIDDDYDNFFDSKNNSKQFAGPLAISLMRKPKPKTEKLKKKIT 130
Query: 1613 KKKKKKKKKKKKKKKKKKKKKYS 1635
K KKKKK K + KY
Sbjct: 131 VNKSTNKKKKKVLSSKDELIKYD 153
Score = 38.3 bits (89), Expect = 0.037
Identities = 21/74 (28%), Positives = 27/74 (36%), Gaps = 10/74 (13%)
Query: 1573 LARREGRGEKKKKKK----------KKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKK 1622
+ + + +KK KKK K K+ K K K +K KKK
Sbjct: 72 SKKTKLKQKKKIKKKLHIDDDYDNFFDSKNNSKQFAGPLAISLMRKPKPKTEKLKKKITV 131
Query: 1623 KKKKKKKKKKKYSR 1636
K KKKKK S
Sbjct: 132 NKSTNKKKKKVLSS 145
Score = 37.1 bits (86), Expect = 0.100
Identities = 22/73 (30%), Positives = 30/73 (41%), Gaps = 10/73 (13%)
Query: 1571 DLLARREGRGEKKKKKKKK----------KKKKKKKKKKKKKKKKKYKKKKKKKKKKKKK 1620
DL ++ + ++KKK KKK K K+ +K K K +K KK
Sbjct: 68 DLKDSKKTKLKQKKKIKKKLHIDDDYDNFFDSKNNSKQFAGPLAISLMRKPKPKTEKLKK 127
Query: 1621 KKKKKKKKKKKKK 1633
K K KKKK
Sbjct: 128 KITVNKSTNKKKK 140
Score = 33.3 bits (76), Expect = 1.4
Identities = 17/44 (38%), Positives = 20/44 (45%)
Query: 1586 KKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKK 1629
+K K K +K KKK K KKKKK K + K K K
Sbjct: 115 MRKPKPKTEKLKKKITVNKSTNKKKKKVLSSKDELIKYDNNKPK 158
Score = 32.9 bits (75), Expect = 1.7
Identities = 17/44 (38%), Positives = 20/44 (45%)
Query: 1587 KKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKK 1630
+K K K +K KKK K KKKKK K + K K K
Sbjct: 115 MRKPKPKTEKLKKKITVNKSTNKKKKKVLSSKDELIKYDNNKPK 158
Score = 32.9 bits (75), Expect = 1.9
Identities = 17/44 (38%), Positives = 20/44 (45%)
Query: 1588 KKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKK 1631
+K K K +K KKK K KKKKK K + K K K
Sbjct: 115 MRKPKPKTEKLKKKITVNKSTNKKKKKVLSSKDELIKYDNNKPK 158
Score = 32.5 bits (74), Expect = 2.4
Identities = 17/53 (32%), Positives = 20/53 (37%)
Query: 1573 LARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKK 1625
A +K K K +K KKK K KKK K K + K K K
Sbjct: 106 FAGPLAISLMRKPKPKTEKLKKKITVNKSTNKKKKKVLSSKDELIKYDNNKPK 158
Score = 32.5 bits (74), Expect = 2.6
Identities = 16/44 (36%), Positives = 19/44 (43%)
Query: 1585 KKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKK 1628
+K K K +K KKK K KKKK K + K K K
Sbjct: 115 MRKPKPKTEKLKKKITVNKSTNKKKKKVLSSKDELIKYDNNKPK 158
Score = 32.5 bits (74), Expect = 2.6
Identities = 17/44 (38%), Positives = 20/44 (45%)
Query: 1590 KKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
+K K K +K KKK K KKKKK K + K K K
Sbjct: 115 MRKPKPKTEKLKKKITVNKSTNKKKKKVLSSKDELIKYDNNKPK 158
Score = 32.1 bits (73), Expect = 3.0
Identities = 16/44 (36%), Positives = 19/44 (43%)
Query: 1584 KKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKK 1627
+K K K +K KKK K K KKK K + K K K
Sbjct: 115 MRKPKPKTEKLKKKITVNKSTNKKKKKVLSSKDELIKYDNNKPK 158
Score = 32.1 bits (73), Expect = 3.2
Identities = 17/47 (36%), Positives = 20/47 (42%)
Query: 1589 KKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYS 1635
+K K K +K KKK KKKKK K + K K K S
Sbjct: 115 MRKPKPKTEKLKKKITVNKSTNKKKKKVLSSKDELIKYDNNKPKSIS 161
Score = 31.7 bits (72), Expect = 3.8
Identities = 16/44 (36%), Positives = 19/44 (43%)
Query: 1583 KKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKK 1626
+K K K +K KKK K KK KK K + K K K
Sbjct: 115 MRKPKPKTEKLKKKITVNKSTNKKKKKVLSSKDELIKYDNNKPK 158
Score = 30.6 bits (69), Expect = 9.9
Identities = 24/69 (34%), Positives = 30/69 (43%)
Query: 1582 KKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGGG 1641
KK +K KK KK K K KK K K+KKK KKK K S++ G
Sbjct: 50 KKLHEKLDKKNKKFNKTDDLKDSKKTKLKQKKKIKKKLHIDDDYDNFFDSKNNSKQFAGP 109
Query: 1642 GEKELVQKN 1650
L++K
Sbjct: 110 LAISLMRKP 118
>gnl|CDD|204792 pfam11947, DUF3464, Protein of unknown function (DUF3464). This
family of proteins are functionally uncharacterized. This
protein is found in bacteria and eukaryotes. Proteins in
this family are typically between 137 to 196 amino acids
in length.
Length = 149
Score = 36.9 bits (86), Expect = 0.027
Identities = 13/45 (28%), Positives = 21/45 (46%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKK 1625
+K+ + K+ +KK K +K K K K+KK K K+
Sbjct: 1 MASSRKRLPFEPKRSRKKGVKALRKAAVAKSKDKQKKPKSKRAAS 45
Score = 36.5 bits (85), Expect = 0.033
Identities = 13/45 (28%), Positives = 21/45 (46%)
Query: 1588 KKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKK 1632
+K+ + K+ +KK K +K K K K+KK K K+
Sbjct: 1 MASSRKRLPFEPKRSRKKGVKALRKAAVAKSKDKQKKPKSKRAAS 45
Score = 36.2 bits (84), Expect = 0.043
Identities = 13/45 (28%), Positives = 21/45 (46%)
Query: 1585 KKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKK 1629
+K+ + K+ +KK K +K K K K+KK K K+
Sbjct: 1 MASSRKRLPFEPKRSRKKGVKALRKAAVAKSKDKQKKPKSKRAAS 45
Score = 36.2 bits (84), Expect = 0.051
Identities = 13/45 (28%), Positives = 21/45 (46%)
Query: 1582 KKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKK 1626
+K+ + K+ +KK K +K K K K+KK K K+
Sbjct: 1 MASSRKRLPFEPKRSRKKGVKALRKAAVAKSKDKQKKPKSKRAAS 45
Score = 35.4 bits (82), Expect = 0.090
Identities = 13/45 (28%), Positives = 20/45 (44%)
Query: 1584 KKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKK 1628
+K+ + K+ +KK K K K K K+KK K K+
Sbjct: 1 MASSRKRLPFEPKRSRKKGVKALRKAAVAKSKDKQKKPKSKRAAS 45
Score = 35.4 bits (82), Expect = 0.094
Identities = 14/48 (29%), Positives = 22/48 (45%)
Query: 1593 KKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGG 1640
+K+ + K+ +KK K +K K K K+KK K K + G
Sbjct: 1 MASSRKRLPFEPKRSRKKGVKALRKAAVAKSKDKQKKPKSKRAASESG 48
Score = 34.6 bits (80), Expect = 0.15
Identities = 13/45 (28%), Positives = 21/45 (46%)
Query: 1580 GEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKK 1624
+K+ + K+ +KK K +K K K K+KK K K+
Sbjct: 1 MASSRKRLPFEPKRSRKKGVKALRKAAVAKSKDKQKKPKSKRAAS 45
Score = 34.6 bits (80), Expect = 0.15
Identities = 13/45 (28%), Positives = 21/45 (46%)
Query: 1589 KKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
+K+ + K+ +KK K +K K K K+KK K K+
Sbjct: 1 MASSRKRLPFEPKRSRKKGVKALRKAAVAKSKDKQKKPKSKRAAS 45
Score = 34.2 bits (79), Expect = 0.18
Identities = 12/45 (26%), Positives = 20/45 (44%)
Query: 1583 KKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKK 1627
+K+ + K+ +KK K + K K K+KK K K+
Sbjct: 1 MASSRKRLPFEPKRSRKKGVKALRKAAVAKSKDKQKKPKSKRAAS 45
Score = 34.2 bits (79), Expect = 0.19
Identities = 15/48 (31%), Positives = 23/48 (47%)
Query: 1592 KKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGG 1639
+K+ + K+ KK K +K K K K+KK K K+ + E G
Sbjct: 1 MASSRKRLPFEPKRSRKKGVKALRKAAVAKSKDKQKKPKSKRAASESG 48
Score = 34.2 bits (79), Expect = 0.19
Identities = 13/45 (28%), Positives = 21/45 (46%)
Query: 1586 KKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKK 1630
+K+ + K+ +KK K +K K K K+KK K K+
Sbjct: 1 MASSRKRLPFEPKRSRKKGVKALRKAAVAKSKDKQKKPKSKRAAS 45
Score = 33.5 bits (77), Expect = 0.35
Identities = 12/45 (26%), Positives = 20/45 (44%)
Query: 1587 KKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKK 1631
+K+ + K+ +KK +K K K K+KK K K+
Sbjct: 1 MASSRKRLPFEPKRSRKKGVKALRKAAVAKSKDKQKKPKSKRAAS 45
Score = 33.5 bits (77), Expect = 0.41
Identities = 14/48 (29%), Positives = 22/48 (45%)
Query: 1591 KKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREG 1638
+K+ + K+ + K K +K K K K+KK K K+ S G
Sbjct: 1 MASSRKRLPFEPKRSRKKGVKALRKAAVAKSKDKQKKPKSKRAASESG 48
Score = 32.7 bits (75), Expect = 0.76
Identities = 12/45 (26%), Positives = 20/45 (44%)
Query: 1578 GRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKK 1622
+K+ + K+ +KK K +K K K+KK K K+
Sbjct: 1 MASSRKRLPFEPKRSRKKGVKALRKAAVAKSKDKQKKPKSKRAAS 45
Score = 32.3 bits (74), Expect = 0.80
Identities = 13/48 (27%), Positives = 19/48 (39%)
Query: 1594 KKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGGG 1641
+K+ + K +KK K +K K K K+KK K G
Sbjct: 1 MASSRKRLPFEPKRSRKKGVKALRKAAVAKSKDKQKKPKSKRAASESG 48
Score = 31.5 bits (72), Expect = 1.5
Identities = 13/48 (27%), Positives = 20/48 (41%)
Query: 1595 KKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGGGG 1642
+K+ + + +KK K +K K K K+KK K R G
Sbjct: 1 MASSRKRLPFEPKRSRKKGVKALRKAAVAKSKDKQKKPKSKRAASESG 48
>gnl|CDD|220231 pfam09420, Nop16, Ribosome biogenesis protein Nop16. Nop16 is a
protein involved in ribosome biogenesis.
Length = 173
Score = 37.0 bits (86), Expect = 0.029
Identities = 18/53 (33%), Positives = 25/53 (47%)
Query: 1586 KKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREG 1638
+KKKK + K +K+ K+K +KKK K KKK + Y R G
Sbjct: 2 RKKKKNRSSNYKVNRKRLKRKDRKKKINIIGNPIIAKNWDKKKTLAQNYKRLG 54
Score = 33.2 bits (76), Expect = 0.63
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKK 1606
+KKKK + K +K+ K+K +KK
Sbjct: 1 VRKKKKNRSSNYKVNRKRLKRKDRKK 26
Score = 32.8 bits (75), Expect = 0.71
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 1582 KKKKKKKKKKKKKKKKKKKKKKKKK 1606
KKKK + K +K+ K+K +KKK
Sbjct: 3 KKKKNRSSNYKVNRKRLKRKDRKKK 27
Score = 31.3 bits (71), Expect = 2.4
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 1579 RGEKKKKKKKKKKKKKKKKKKKKKKKKK 1606
R +KK + K +K+ K+K +KKK
Sbjct: 2 RKKKKNRSSNYKVNRKRLKRKDRKKKIN 29
>gnl|CDD|220129 pfam09159, Ydc2-catalyt, Mitochondrial resolvase Ydc2 / RNA splicing
MRS1. Members of this family adopt a secondary structure
consisting of two beta sheets and one alpha helix,
arranged as a beta-alpha-beta motif. Each beta sheet has
five strands, arranged in a 32145 order, with the second
strand being antiparallel to the rest. Mitochondrial
resolvase Ydc2 is capable of resolving Holliday junctions
and cleaves DNA after 5'-CT-3' and 5'-TT-3' sequences.
This family also contains the mitochondrial RNA-splicing
protein MRS1 which is involved in the excision of group I
introns.
Length = 254
Score = 37.7 bits (88), Expect = 0.029
Identities = 22/86 (25%), Positives = 29/86 (33%), Gaps = 25/86 (29%)
Query: 1573 LARREGRGEKKKKKKKKKKKKKKKKKKKK----------------------KKKKKY--- 1607
R E EKKK + KKK K KK + ++K +
Sbjct: 146 CERTEILAEKKKPRSKKKSSKNSKKLRIDLVGEWLSTAISPPDSSPVSLDAREKLRAYLP 205
Query: 1608 KKKKKKKKKKKKKKKKKKKKKKKKKK 1633
K + K K KK K+ K K K
Sbjct: 206 KWEGKTKNKKSLKEYKDLIKLLDSGK 231
Score = 32.7 bits (75), Expect = 1.3
Identities = 17/91 (18%), Positives = 30/91 (32%), Gaps = 24/91 (26%)
Query: 1565 LGSYIVDLLARREGRGEKKKKKKKKKKKKKKK------------------------KKKK 1600
+ +Y + + + + KKK K KK + ++K
Sbjct: 141 MANYWCERTEILAEKKKPRSKKKSSKNSKKLRIDLVGEWLSTAISPPDSSPVSLDAREKL 200
Query: 1601 KKKKKKYKKKKKKKKKKKKKKKKKKKKKKKK 1631
+ K++ K K KK K+ K K K
Sbjct: 201 RAYLPKWEGKTKNKKSLKEYKDLIKLLDSGK 231
>gnl|CDD|218440 pfam05110, AF-4, AF-4 proto-oncoprotein. This family consists of AF4
(Proto-oncogene AF4) and FMR2 (Fragile X E mental
retardation syndrome) nuclear proteins. These proteins
have been linked to human diseases such as acute
lymphoblastic leukaemia and mental retardation. The
family also contains a Drosophila AF4 protein homologue
Lilliputian which contains an AT-hook domain. Lilliputian
represents a novel pair-rule gene that acts in
cytoskeleton regulation, segmentation and morphogenesis
in Drosophila.
Length = 1154
Score = 38.7 bits (90), Expect = 0.034
Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
Query: 1560 PSLKPLGSYI-VDLLARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKK 1618
L I +DLL+R G KK K +K KK+ K +K K K+K
Sbjct: 693 EERYSLWVKIDLDLLSRIPGHPYKKGVPPKPAEKDSLSAPKKQTSKTASEKSSSKGKRKH 752
Query: 1619 KKKKKKKKKKKKKKKYSRE 1637
K ++ K + KK++ +
Sbjct: 753 KNDEEADKIESKKQRLEEK 771
>gnl|CDD|192718 pfam11176, DUF2962, Protein of unknown function (DUF2962). This
eukaryotic family of proteins has no known function.
Length = 155
Score = 36.5 bits (85), Expect = 0.034
Identities = 14/47 (29%), Positives = 23/47 (48%)
Query: 1588 KKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKY 1634
K K KKKK K +K K+ + + K +KKK ++ +K+
Sbjct: 1 KVTKNIAKKKKVLHPKSRKAKQLNRATLRDDKLEKKKAERAEKRSLE 47
Score = 35.7 bits (83), Expect = 0.071
Identities = 14/50 (28%), Positives = 25/50 (50%)
Query: 1584 KKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
K K KKKK K +K K+ + + K +KKK ++ +K+ + +
Sbjct: 1 KVTKNIAKKKKVLHPKSRKAKQLNRATLRDDKLEKKKAERAEKRSLELDR 50
Score = 34.9 bits (81), Expect = 0.13
Identities = 16/48 (33%), Positives = 24/48 (50%)
Query: 1591 KKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREG 1638
K K KKKK K +K K+ + + K +KKK ++ +K S E
Sbjct: 1 KVTKNIAKKKKVLHPKSRKAKQLNRATLRDDKLEKKKAERAEKRSLEL 48
Score = 34.5 bits (80), Expect = 0.18
Identities = 15/56 (26%), Positives = 28/56 (50%)
Query: 1582 KKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSRE 1637
K K KKKK K +K K+ + + K +KKK ++ +K+ + + + +E
Sbjct: 1 KVTKNIAKKKKVLHPKSRKAKQLNRATLRDDKLEKKKAERAEKRSLELDRLFFFQE 56
Score = 30.3 bits (69), Expect = 4.6
Identities = 16/69 (23%), Positives = 32/69 (46%), Gaps = 14/69 (20%)
Query: 1583 KKKKKKKKKKK------KKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKK--------KK 1628
K K KKKK +K K+ + + K +KKK ++ +K+ + + K+
Sbjct: 1 KVTKNIAKKKKVLHPKSRKAKQLNRATLRDDKLEKKKAERAEKRSLELDRLFFFQEQIKE 60
Query: 1629 KKKKKYSRE 1637
+K+ ++ E
Sbjct: 61 DEKEPFTLE 69
>gnl|CDD|202819 pfam03939, Ribosomal_L23eN, Ribosomal protein L23, N-terminal domain.
The N-terminal domain appears to be specific to the
eukaryotic ribosomal proteins L25, L23, and L23a.
Length = 52
Score = 33.8 bits (78), Expect = 0.034
Identities = 15/46 (32%), Positives = 21/46 (45%)
Query: 1591 KKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSR 1636
K K K KK K + KKK+K + ++ K K + KY R
Sbjct: 1 PKAKALKAKKAVLKGVHGKKKRKIRTSVTFRRPKTLKLPRNPKYPR 46
Score = 31.1 bits (71), Expect = 0.40
Identities = 14/52 (26%), Positives = 19/52 (36%)
Query: 1583 KKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKY 1634
K K K KK K KKK+K ++ K K + K +K
Sbjct: 1 PKAKALKAKKAVLKGVHGKKKRKIRTSVTFRRPKTLKLPRNPKYPRKSVPHR 52
Score = 28.4 bits (64), Expect = 3.4
Identities = 14/51 (27%), Positives = 20/51 (39%)
Query: 1582 KKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKK 1632
K K K KK K KKK+K + ++ K K + K +K
Sbjct: 1 PKAKALKAKKAVLKGVHGKKKRKIRTSVTFRRPKTLKLPRNPKYPRKSVPH 51
>gnl|CDD|227594 COG5269, ZUO1, Ribosome-associated chaperone zuotin [Translation,
ribosomal structure and biogenesis / Posttranslational
modification, protein turnover, chaperones].
Length = 379
Score = 38.1 bits (88), Expect = 0.034
Identities = 20/78 (25%), Positives = 29/78 (37%), Gaps = 5/78 (6%)
Query: 1555 ASKSYPSLKPLGSYIVDLLARR-----EGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKK 1609
A K P +K ++ R G K K K + K K + + +
Sbjct: 225 AKKRDPRIKSFKEQEKEMKKIRKWEREAGARLKALAALKGKAEAKNKAEIEAEALASATA 284
Query: 1610 KKKKKKKKKKKKKKKKKK 1627
KKK K+ KK K +KK
Sbjct: 285 VKKKAKEVMKKALKMEKK 302
Score = 35.8 bits (82), Expect = 0.21
Identities = 16/59 (27%), Positives = 22/59 (37%)
Query: 1576 REGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKY 1634
R K K + K K + + + KK K+ KK K +KK K K Y
Sbjct: 255 RLKALAALKGKAEAKNKAEIEAEALASATAVKKKAKEVMKKALKMEKKAIKNAAKDADY 313
Score = 33.5 bits (76), Expect = 1.1
Identities = 14/54 (25%), Positives = 22/54 (40%)
Query: 1574 ARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKK 1627
+ + K + K K + + + KKK K+ KK K +KK K K
Sbjct: 256 LKALAALKGKAEAKNKAEIEAEALASATAVKKKAKEVMKKALKMEKKAIKNAAK 309
Score = 33.1 bits (75), Expect = 1.3
Identities = 16/62 (25%), Positives = 24/62 (38%)
Query: 1574 ARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
AR + K K + K K + + + K K K+ KK K +KK K K
Sbjct: 254 ARLKALAALKGKAEAKNKAEIEAEALASATAVKKKAKEVMKKALKMEKKAIKNAAKDADY 313
Query: 1634 YS 1635
+
Sbjct: 314 FG 315
Score = 31.2 bits (70), Expect = 4.9
Identities = 19/72 (26%), Positives = 28/72 (38%)
Query: 1552 QAWASKSYPSLKPLGSYIVDLLARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKK 1611
Q K + + LA +G+ E K K + + + KKK K+ KK
Sbjct: 238 QEKEMKKIRKWEREAGARLKALAALKGKAEAKNKAEIEAEALASATAVKKKAKEVMKKAL 297
Query: 1612 KKKKKKKKKKKK 1623
K +KK K K
Sbjct: 298 KMEKKAIKNAAK 309
Score = 30.4 bits (68), Expect = 8.8
Identities = 19/85 (22%), Positives = 39/85 (45%), Gaps = 5/85 (5%)
Query: 1569 IVDLLARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKK-----KKKK 1623
+V + +R+ R + K+++K+ KK +K +++ + K K K + K K +
Sbjct: 221 LVQIAKKRDPRIKSFKEQEKEMKKIRKWEREAGARLKALAALKGKAEAKNKAEIEAEALA 280
Query: 1624 KKKKKKKKKKYSREGGGGGEKELVQ 1648
KKK K + EK+ ++
Sbjct: 281 SATAVKKKAKEVMKKALKMEKKAIK 305
>gnl|CDD|227577 COG5252, COG5252, Uncharacterized conserved protein, contains
CCCH-type Zn-finger protein [General function prediction
only].
Length = 299
Score = 37.8 bits (87), Expect = 0.037
Identities = 15/64 (23%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Query: 1577 EGRGEKKKKKKKKKKKKKKKKK---KKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
+ + E KK + +K+ + K K K + K + K+ + K++ +KK+K + ++
Sbjct: 8 KKQQESGKKATRDMRKELEDKTFGLKNKNRSTKVQAIIKQIETLNLKEQLEKKEKMRMEE 67
Query: 1634 YSRE 1637
RE
Sbjct: 68 KRRE 71
Score = 35.8 bits (82), Expect = 0.15
Identities = 18/74 (24%), Positives = 36/74 (48%), Gaps = 7/74 (9%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKK-------KKKKKKKKKK 1633
+K KK+++ KK + +K+ + K + K K + K + K K++ +KK+K
Sbjct: 4 KKMAKKQQESGKKATRDMRKELEDKTFGLKNKNRSTKVQAIIKQIETLNLKEQLEKKEKM 63
Query: 1634 YSREGGGGGEKELV 1647
E EK+++
Sbjct: 64 RMEEKRREPEKQVI 77
>gnl|CDD|215641 PLN03237, PLN03237, DNA topoisomerase 2; Provisional.
Length = 1465
Score = 38.3 bits (89), Expect = 0.039
Identities = 12/50 (24%), Positives = 25/50 (50%)
Query: 1570 VDLLARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKK 1619
+D L + + + E+ ++K ++ + + KK ++ KK KK KK
Sbjct: 1165 LDKLDKEDAKAEEAREKLQRAAARGESGAAKKVSRQAPKKPAPKKTTKKA 1214
Score = 37.9 bits (88), Expect = 0.060
Identities = 14/61 (22%), Positives = 29/61 (47%)
Query: 1568 YIVDLLARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKK 1627
++ DL A + + K+ K ++ ++K ++ + + KK ++ KK KK KK
Sbjct: 1154 WLKDLDALEKELDKLDKEDAKAEEAREKLQRAAARGESGAAKKVSRQAPKKPAPKKTTKK 1213
Query: 1628 K 1628
Sbjct: 1214 A 1214
Score = 37.1 bits (86), Expect = 0.090
Identities = 19/88 (21%), Positives = 28/88 (31%), Gaps = 24/88 (27%)
Query: 1574 ARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKK------------------ 1615
A+ E EK ++ + + KK ++ KK KK KK
Sbjct: 1173 AKAEEAREKLQRAAARGESGAAKKVSRQAPKKPAPKKTTKKASESETTEETYGSSAMETE 1232
Query: 1616 ------KKKKKKKKKKKKKKKKKKYSRE 1637
K K + KKK K+ E
Sbjct: 1233 NVAEVVKPKGRAGAKKKAPAAAKEKEEE 1260
Score = 37.1 bits (86), Expect = 0.099
Identities = 15/57 (26%), Positives = 26/57 (45%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSRE 1637
EK+ K K+ K ++ ++K ++ + KK ++ KK KK KK E
Sbjct: 1162 EKELDKLDKEDAKAEEAREKLQRAAARGESGAAKKVSRQAPKKPAPKKTTKKASESE 1218
Score = 35.6 bits (82), Expect = 0.28
Identities = 12/50 (24%), Positives = 23/50 (46%)
Query: 1588 KKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSRE 1637
K+ K ++ ++K ++ + + KK ++ KK KK KK S
Sbjct: 1170 KEDAKAEEAREKLQRAAARGESGAAKKVSRQAPKKPAPKKTTKKASESET 1219
Score = 34.8 bits (80), Expect = 0.49
Identities = 15/65 (23%), Positives = 30/65 (46%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGG 1640
+K K+ K ++ ++K ++ + + KK ++ KK KK KK + + + E G
Sbjct: 1166 DKLDKEDAKAEEAREKLQRAAARGESGAAKKVSRQAPKKPAPKKTTKKASESETTEETYG 1225
Query: 1641 GGEKE 1645
E
Sbjct: 1226 SSAME 1230
Score = 32.9 bits (75), Expect = 2.0
Identities = 20/76 (26%), Positives = 24/76 (31%), Gaps = 22/76 (28%)
Query: 1573 LARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKK----------------------YKKK 1610
L R RGE KK ++ KK KK KK K K
Sbjct: 1182 LQRAAARGESGAAKKVSRQAPKKPAPKKTTKKASESETTEETYGSSAMETENVAEVVKPK 1241
Query: 1611 KKKKKKKKKKKKKKKK 1626
+ KKK K+K
Sbjct: 1242 GRAGAKKKAPAAAKEK 1257
>gnl|CDD|227238 COG4901, COG4901, Ribosomal protein S25 [Translation, ribosomal
structure and biogenesis].
Length = 107
Score = 35.3 bits (81), Expect = 0.039
Identities = 19/56 (33%), Positives = 31/56 (55%)
Query: 1582 KKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSRE 1637
K + K+KK +K K K KKK+ KKKKK++ ++ ++ K +K+ RE
Sbjct: 2 APKSQLSKEKKAEKAKAGTAKDKKKWSKKKKKEEARRAVTVDEELLDKIRKEVPRE 57
Score = 34.5 bits (79), Expect = 0.076
Identities = 17/53 (32%), Positives = 27/53 (50%)
Query: 1585 KKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSRE 1637
K + K+KK +K K K KKK KKKKK++ ++ ++ K +E
Sbjct: 1 MAPKSQLSKEKKAEKAKAGTAKDKKKWSKKKKKEEARRAVTVDEELLDKIRKE 53
Score = 32.2 bits (73), Expect = 0.47
Identities = 16/51 (31%), Positives = 28/51 (54%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKK 1631
K+KK +K K K KKK KKKKK + ++ ++ K +K+ +++
Sbjct: 8 SKEKKAEKAKAGTAKDKKKWSKKKKKEEARRAVTVDEELLDKIRKEVPRER 58
Score = 31.8 bits (72), Expect = 0.66
Identities = 15/51 (29%), Positives = 28/51 (54%)
Query: 1584 KKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKY 1634
K+KK +K K K KKK KKK K++ ++ ++ K +K+ +++
Sbjct: 9 KEKKAEKAKAGTAKDKKKWSKKKKKEEARRAVTVDEELLDKIRKEVPRERV 59
Score = 30.3 bits (68), Expect = 3.0
Identities = 15/52 (28%), Positives = 28/52 (53%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKK 1632
K+KK +K K K KKK KKKK ++ ++ ++ K +K+ +++
Sbjct: 7 LSKEKKAEKAKAGTAKDKKKWSKKKKKEEARRAVTVDEELLDKIRKEVPRER 58
Score = 29.1 bits (65), Expect = 6.1
Identities = 15/50 (30%), Positives = 28/50 (56%)
Query: 1576 REGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKK 1625
+E + EK K K KKK KKKKK++ ++ ++ K +K+ +++
Sbjct: 9 KEKKAEKAKAGTAKDKKKWSKKKKKEEARRAVTVDEELLDKIRKEVPRER 58
Score = 28.7 bits (64), Expect = 8.5
Identities = 14/52 (26%), Positives = 27/52 (51%)
Query: 1577 EGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKK 1628
+ +K +K K K KKK KKKKK++ + ++ K +K+ +++
Sbjct: 7 LSKEKKAEKAKAGTAKDKKKWSKKKKKEEARRAVTVDEELLDKIRKEVPRER 58
>gnl|CDD|216337 pfam01159, Ribosomal_L6e, Ribosomal protein L6e.
Length = 108
Score = 35.3 bits (82), Expect = 0.041
Identities = 14/35 (40%), Positives = 26/35 (74%)
Query: 1592 KKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKK 1626
K++KKKKKKK + + + +KK+KK+ +++K +K
Sbjct: 38 KREKKKKKKKSEGEFFAEKKEKKEVSEQRKADQKA 72
Score = 34.9 bits (81), Expect = 0.055
Identities = 14/35 (40%), Positives = 26/35 (74%)
Query: 1593 KKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKK 1627
K++KKKKKKK + ++ +KK+KK+ +++K +K
Sbjct: 38 KREKKKKKKKSEGEFFAEKKEKKEVSEQRKADQKA 72
Score = 33.8 bits (78), Expect = 0.15
Identities = 13/35 (37%), Positives = 24/35 (68%)
Query: 1585 KKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKK 1619
K++KKKKKKK + + +KK+K + +++K +K
Sbjct: 38 KREKKKKKKKSEGEFFAEKKEKKEVSEQRKADQKA 72
Score = 33.4 bits (77), Expect = 0.18
Identities = 14/35 (40%), Positives = 25/35 (71%)
Query: 1583 KKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKK 1617
K++KKKKKKK + + +KK+KK+ +++K +K
Sbjct: 38 KREKKKKKKKSEGEFFAEKKEKKEVSEQRKADQKA 72
Score = 31.8 bits (73), Expect = 0.76
Identities = 14/35 (40%), Positives = 23/35 (65%), Gaps = 3/35 (8%)
Query: 1582 KKKKKKKKKKKKK---KKKKKKKKKKKKYKKKKKK 1613
K++KKKKKKK + +KK+KK+ ++ K +K
Sbjct: 38 KREKKKKKKKSEGEFFAEKKEKKEVSEQRKADQKA 72
Score = 31.8 bits (73), Expect = 0.82
Identities = 14/35 (40%), Positives = 24/35 (68%)
Query: 1590 KKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKK 1624
K++KKKKKKK + + KK+KK+ +++K +K
Sbjct: 38 KREKKKKKKKSEGEFFAEKKEKKEVSEQRKADQKA 72
Score = 31.1 bits (71), Expect = 1.2
Identities = 14/35 (40%), Positives = 25/35 (71%)
Query: 1597 KKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKK 1631
K++KKKKKKK + + +KK+KK+ +++K +K
Sbjct: 38 KREKKKKKKKSEGEFFAEKKEKKEVSEQRKADQKA 72
Score = 31.1 bits (71), Expect = 1.3
Identities = 13/34 (38%), Positives = 23/34 (67%), Gaps = 3/34 (8%)
Query: 1603 KKKKYKKKKKKKK---KKKKKKKKKKKKKKKKKK 1633
K++K KKKKK + +KK+KK+ +++K +K
Sbjct: 38 KREKKKKKKKSEGEFFAEKKEKKEVSEQRKADQK 71
Score = 30.7 bits (70), Expect = 1.8
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 6/45 (13%)
Query: 1595 KKKKKKKKKKKKYKKKKKKKKKKKKK------KKKKKKKKKKKKK 1633
K +K +Y K++KKKKKKK + KK+KK+ +++K
Sbjct: 24 SGVKVPEKINDEYFKREKKKKKKKSEGEFFAEKKEKKEVSEQRKA 68
Score = 29.5 bits (67), Expect = 4.2
Identities = 13/35 (37%), Positives = 24/35 (68%)
Query: 1599 KKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
K++KKKKK K + + +KK+KK+ +++K +K
Sbjct: 38 KREKKKKKKKSEGEFFAEKKEKKEVSEQRKADQKA 72
Score = 29.5 bits (67), Expect = 4.6
Identities = 13/35 (37%), Positives = 24/35 (68%)
Query: 1598 KKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKK 1632
K++KKKKKK + + +KK+KK+ +++K +K
Sbjct: 38 KREKKKKKKKSEGEFFAEKKEKKEVSEQRKADQKA 72
>gnl|CDD|234818 PRK00708, PRK00708, sec-independent translocase; Provisional.
Length = 209
Score = 37.1 bits (86), Expect = 0.043
Identities = 39/165 (23%), Positives = 59/165 (35%), Gaps = 9/165 (5%)
Query: 1476 GKFPEQFDE-----EAAGRKYPILYNQSMN--TVLKQELIRYNRLTVIIKKSLQEVRQAV 1528
G+F QFDE E + I +S+N T L+Q + + IK LQ+
Sbjct: 44 GEFRRQFDEALREAELDDVRQTISDARSLNPRTSLRQAMNPLRQAGNEIKSDLQKATSMS 103
Query: 1529 KGLIVMSKELEEINTSIMFGKIPQAWASKSYPSLKPLGSYIVDLLARREGRGEKKKKKKK 1588
+ + E+ T + +P+ + P+ P + A K + K
Sbjct: 104 EP--ATENKPAEVTTPVEPMGLPETPPAVPVPAPAPAVAAAAAQAAAAPKAPAKPRAKSP 161
Query: 1589 KKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
+ K K + KK KK K K KK KKKK
Sbjct: 162 RPAAKAAPKPTETITAKKAKKTAAAPKPTADKTATPAKKTTKKKK 206
Score = 31.3 bits (71), Expect = 2.8
Identities = 13/60 (21%), Positives = 18/60 (30%)
Query: 1580 GEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGG 1639
K K + K + K K + KK KK K K KK ++
Sbjct: 148 AAPKAPAKPRAKSPRPAAKAAPKPTETITAKKAKKTAAAPKPTADKTATPAKKTTKKKKT 207
>gnl|CDD|221733 pfam12720, DUF3807, Protein of unknown function (DUF3807). This is a
family of conserved fungal proteins of unknown function.
Length = 169
Score = 36.6 bits (85), Expect = 0.043
Identities = 10/63 (15%), Positives = 23/63 (36%)
Query: 1573 LARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKK 1632
A EG + + +K+ +++ K+K + K++K K + +
Sbjct: 76 EAEEEGEVDASPDAGAVAGESSADRKEAEQQGAAQKRKSCRDKERKSAKDPRGGTQDVVD 135
Query: 1633 KYS 1635
K
Sbjct: 136 KSQ 138
>gnl|CDD|215774 pfam00183, HSP90, Hsp90 protein.
Length = 529
Score = 38.2 bits (89), Expect = 0.043
Identities = 17/63 (26%), Positives = 41/63 (65%)
Query: 1567 SYIVDLLARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKK 1626
+Y + L +E E ++++++K++KK++++K K++ ++++K++KKKK KK K+
Sbjct: 20 NYPIYLWVEKEVEKEVPDEEEEEEKEEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKVKE 79
Query: 1627 KKK 1629
Sbjct: 80 TTT 82
Score = 36.7 bits (85), Expect = 0.13
Identities = 17/53 (32%), Positives = 34/53 (64%)
Query: 1577 EGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKK 1629
E EK++KK++++K K+++ ++++K+ KKKK KK K+ + + K K
Sbjct: 39 EEEEEKEEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKVKETTTEWELLNKTK 91
Score = 36.3 bits (84), Expect = 0.14
Identities = 16/54 (29%), Positives = 41/54 (75%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKY 1634
EK+ +K+ ++++++K++KK++++K K+++ ++++K++KKKK KK K+
Sbjct: 28 EKEVEKEVPDEEEEEEKEEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKVKETT 81
Score = 36.3 bits (84), Expect = 0.17
Identities = 16/52 (30%), Positives = 36/52 (69%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKK 1632
E+++K++KK++++K K+++ +++ K++KKKK KK K+ + + K K
Sbjct: 40 EEEEKEEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKVKETTTEWELLNKTK 91
Score = 35.9 bits (83), Expect = 0.17
Identities = 16/56 (28%), Positives = 38/56 (67%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSR 1636
E++K++KK++++K K+++ ++++ ++KKKK KK K+ + + K K ++R
Sbjct: 41 EEEKEEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKVKETTTEWELLNKTKPIWTR 96
Score = 35.9 bits (83), Expect = 0.18
Identities = 14/44 (31%), Positives = 32/44 (72%)
Query: 1594 KKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSRE 1637
++K++KK++++K K+++ ++++K++KKKK KK K+ E
Sbjct: 42 EEKEEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKVKETTTEWE 85
Score = 35.9 bits (83), Expect = 0.22
Identities = 16/53 (30%), Positives = 37/53 (69%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
E++++K++KK++++K K+++ ++ +K++KKKK KK K+ + + K K
Sbjct: 39 EEEEEKEEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKVKETTTEWELLNKTK 91
Score = 34.4 bits (79), Expect = 0.51
Identities = 15/55 (27%), Positives = 41/55 (74%)
Query: 1583 KKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSRE 1637
K+ +K+ ++++++K++KK++++ K+++ ++++K++KKKK KK K+ + E
Sbjct: 29 KEVEKEVPDEEEEEEKEEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKVKETTTE 83
>gnl|CDD|221643 pfam12572, DUF3752, Protein of unknown function (DUF3752). This
domain family is found in eukaryotes, and is typically
between 140 and 163 amino acids in length.
Length = 148
Score = 36.2 bits (84), Expect = 0.047
Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 7/73 (9%)
Query: 1572 LLARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKK-------KKKKKKKKKK 1624
L G K K+ K+ +K K+Y +KK+ K KK+KKKKK++
Sbjct: 46 LQDEVLGVEAGASAPAAASAKASKRDKEMARKVKEYNEKKRGKSLVEQHQKKQKKKKKEE 105
Query: 1625 KKKKKKKKKYSRE 1637
+ ++ + RE
Sbjct: 106 ENDDPSRRPFDRE 118
Score = 30.1 bits (68), Expect = 5.0
Identities = 15/61 (24%), Positives = 31/61 (50%), Gaps = 6/61 (9%)
Query: 1581 EKKKKK------KKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKY 1634
EKK+ K +KK+KKKKK+++ ++ + ++K K K ++++ K +
Sbjct: 83 EKKRGKSLVEQHQKKQKKKKKEEENDDPSRRPFDREKDLAVGGKISKAQRRELINKAAEL 142
Query: 1635 S 1635
Sbjct: 143 G 143
>gnl|CDD|217479 pfam03297, Ribosomal_S25, S25 ribosomal protein.
Length = 105
Score = 35.0 bits (81), Expect = 0.051
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 1584 KKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKK 1615
KK++KK K K KKKK+ K K K K
Sbjct: 4 KKQQKKAAKAAAASAGGKAKKKKWSKGKVKDK 35
Score = 33.1 bits (76), Expect = 0.25
Identities = 14/32 (43%), Positives = 16/32 (50%)
Query: 1591 KKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKK 1622
KK++KK K K KKKK K K K K
Sbjct: 4 KKQQKKAAKAAAASAGGKAKKKKWSKGKVKDK 35
Score = 33.1 bits (76), Expect = 0.25
Identities = 14/32 (43%), Positives = 16/32 (50%)
Query: 1592 KKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKK 1623
KK++KK K K KKKK K K K K
Sbjct: 4 KKQQKKAAKAAAASAGGKAKKKKWSKGKVKDK 35
Score = 33.1 bits (76), Expect = 0.27
Identities = 14/32 (43%), Positives = 16/32 (50%)
Query: 1583 KKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKK 1614
KK++KK K K KKKK K K K K
Sbjct: 4 KKQQKKAAKAAAASAGGKAKKKKWSKGKVKDK 35
Score = 32.7 bits (75), Expect = 0.35
Identities = 14/32 (43%), Positives = 16/32 (50%)
Query: 1596 KKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKK 1627
KK++KK K K KKKK K K K K
Sbjct: 4 KKQQKKAAKAAAASAGGKAKKKKWSKGKVKDK 35
Score = 32.4 bits (74), Expect = 0.45
Identities = 14/32 (43%), Positives = 16/32 (50%)
Query: 1594 KKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKK 1625
KK++KK K K KKKK K K K K
Sbjct: 4 KKQQKKAAKAAAASAGGKAKKKKWSKGKVKDK 35
Score = 32.4 bits (74), Expect = 0.48
Identities = 14/32 (43%), Positives = 16/32 (50%)
Query: 1601 KKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKK 1632
KK++KK K K KKKK K K K K
Sbjct: 4 KKQQKKAAKAAAASAGGKAKKKKWSKGKVKDK 35
Score = 32.4 bits (74), Expect = 0.49
Identities = 14/32 (43%), Positives = 16/32 (50%)
Query: 1595 KKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKK 1626
KK++KK K K KKKK K K K K
Sbjct: 4 KKQQKKAAKAAAASAGGKAKKKKWSKGKVKDK 35
Score = 32.0 bits (73), Expect = 0.59
Identities = 14/32 (43%), Positives = 16/32 (50%)
Query: 1598 KKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKK 1629
KK++KK K K KKKK K K K K
Sbjct: 4 KKQQKKAAKAAAASAGGKAKKKKWSKGKVKDK 35
Score = 32.0 bits (73), Expect = 0.61
Identities = 14/32 (43%), Positives = 16/32 (50%)
Query: 1593 KKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKK 1624
KK++KK K K KKKK K K K K
Sbjct: 4 KKQQKKAAKAAAASAGGKAKKKKWSKGKVKDK 35
Score = 32.0 bits (73), Expect = 0.71
Identities = 14/32 (43%), Positives = 16/32 (50%)
Query: 1600 KKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKK 1631
KK++KK K K KKKK K K K K
Sbjct: 4 KKQQKKAAKAAAASAGGKAKKKKWSKGKVKDK 35
Score = 31.6 bits (72), Expect = 0.88
Identities = 14/32 (43%), Positives = 16/32 (50%)
Query: 1597 KKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKK 1628
KK++KK K K KKKK K K K K
Sbjct: 4 KKQQKKAAKAAAASAGGKAKKKKWSKGKVKDK 35
Score = 31.6 bits (72), Expect = 0.95
Identities = 14/32 (43%), Positives = 16/32 (50%)
Query: 1589 KKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKK 1620
KK++KK K K KKKK K K K K
Sbjct: 4 KKQQKKAAKAAAASAGGKAKKKKWSKGKVKDK 35
Score = 31.2 bits (71), Expect = 1.2
Identities = 13/32 (40%), Positives = 15/32 (46%)
Query: 1602 KKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
KK++K K K KKKK K K K K
Sbjct: 4 KKQQKKAAKAAAASAGGKAKKKKWSKGKVKDK 35
Score = 30.8 bits (70), Expect = 1.5
Identities = 13/32 (40%), Positives = 15/32 (46%)
Query: 1599 KKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKK 1630
KK++KK K KKKK K K K K
Sbjct: 4 KKQQKKAAKAAAASAGGKAKKKKWSKGKVKDK 35
Score = 30.8 bits (70), Expect = 1.5
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 1611 KKKKKKKKKKKKKKKKKKKKKKKYSR 1636
KK++KK K K KKKK+S+
Sbjct: 4 KKQQKKAAKAAAASAGGKAKKKKWSK 29
Score = 30.8 bits (70), Expect = 1.7
Identities = 13/32 (40%), Positives = 15/32 (46%)
Query: 1588 KKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKK 1619
KK++KK K K KKK K K K K
Sbjct: 4 KKQQKKAAKAAAASAGGKAKKKKWSKGKVKDK 35
Score = 30.0 bits (68), Expect = 2.5
Identities = 13/32 (40%), Positives = 15/32 (46%)
Query: 1590 KKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKK 1621
KK++KK K KKKK K K K K
Sbjct: 4 KKQQKKAAKAAAASAGGKAKKKKWSKGKVKDK 35
Score = 30.0 bits (68), Expect = 3.0
Identities = 13/31 (41%), Positives = 15/31 (48%)
Query: 1582 KKKKKKKKKKKKKKKKKKKKKKKKKYKKKKK 1612
K++KK K K KKKK K K K K
Sbjct: 5 KQQKKAAKAAAASAGGKAKKKKWSKGKVKDK 35
Score = 28.9 bits (65), Expect = 8.1
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 1608 KKKKKKKKKKKKKKKKKKKKKKKKKKYSRE 1637
K++KK K K KKKK K ++
Sbjct: 5 KQQKKAAKAAAASAGGKAKKKKWSKGKVKD 34
>gnl|CDD|240253 PTZ00068, PTZ00068, 60S ribosomal protein L13a; Provisional.
Length = 202
Score = 36.6 bits (85), Expect = 0.051
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 1593 KKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
K ++K+K++ YKKK K +K K+ +KK K K
Sbjct: 153 AKLEEKRKERAAAYYKKKVKLRKAWKEARKKALAKLPKAIV 193
Score = 34.6 bits (80), Expect = 0.22
Identities = 16/56 (28%), Positives = 25/56 (44%)
Query: 1580 GEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYS 1635
G K K ++K+K++ KKK +K K+ +KK K K KK+
Sbjct: 145 GWKYADVVAKLEEKRKERAAAYYKKKVKLRKAWKEARKKALAKLPKAIVAVLKKFG 200
Score = 34.6 bits (80), Expect = 0.24
Identities = 16/50 (32%), Positives = 24/50 (48%)
Query: 1586 KKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYS 1635
K ++K+K++ KKK K K K+ +KK K K KK Y+
Sbjct: 153 AKLEEKRKERAAAYYKKKVKLRKAWKEARKKALAKLPKAIVAVLKKFGYA 202
Score = 33.1 bits (76), Expect = 0.86
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 1594 KKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSRE 1637
K ++K+K++ Y KKK K +K K+ +KK K K
Sbjct: 153 AKLEEKRKERAAAYYKKKVKL--RKAWKEARKKALAKLPKAIVA 194
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and
chromosome partitioning].
Length = 1163
Score = 38.2 bits (89), Expect = 0.053
Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
Query: 758 KKAKLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQK 817
KA+L E E + KL R +L + +L L +EL + ++ +E E +IE K +
Sbjct: 218 LKAELRELELALLL--AKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSE 275
Query: 818 LERAEKLIGGLGGEKTRWSEASANL 842
LE + + L E E L
Sbjct: 276 LEELREELEELQEELLELKEEIEEL 300
Score = 36.2 bits (84), Expect = 0.17
Identities = 18/70 (25%), Positives = 33/70 (47%)
Query: 759 KAKLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKL 818
K ++ E E E+L +L +L AL EL + ++ LE +IE ++++
Sbjct: 778 KEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEI 837
Query: 819 ERAEKLIGGL 828
E E+ + L
Sbjct: 838 EELEEKLDEL 847
Score = 34.7 bits (80), Expect = 0.48
Identities = 20/92 (21%), Positives = 42/92 (45%), Gaps = 3/92 (3%)
Query: 758 KKAKLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQK 817
+ +L E + ++E+L + L L KL+ +EL +K + +E +++E ++
Sbjct: 745 ELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELE---EE 801
Query: 818 LERAEKLIGGLGGEKTRWSEASANLSKALVNC 849
LE AE+ + L E + L + +
Sbjct: 802 LEEAERRLDALERELESLEQRRERLEQEIEEL 833
Score = 34.3 bits (79), Expect = 0.64
Identities = 21/129 (16%), Positives = 61/129 (47%), Gaps = 3/129 (2%)
Query: 1509 RYNRLTVIIKKSLQEVRQAVKGLIVMSKELEEINTSIMFGKIPQAWASKSYPSLKPLGSY 1568
+RL +++ +E+ +A K + + ELEE+ + Q + ++ L
Sbjct: 247 ELSRLEEELEELQEELEEAEKEIEELKSELEELREELE---ELQEELLELKEEIEELEGE 303
Query: 1569 IVDLLARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKK 1628
I L R E + ++ +++ ++ K+K + K++ ++ + ++ ++ + ++ K++
Sbjct: 304 ISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEEL 363
Query: 1629 KKKKKYSRE 1637
++K E
Sbjct: 364 EEKLSALLE 372
Score = 33.9 bits (78), Expect = 0.82
Identities = 17/72 (23%), Positives = 36/72 (50%), Gaps = 7/72 (9%)
Query: 759 KAKLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKD-------KKELEDQI 811
+ +L+ E + E+L ++ + +L+ LR+EL + ++ +ELE +I
Sbjct: 245 EEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEI 304
Query: 812 ELCKQKLERAEK 823
L +++LE E
Sbjct: 305 SLLRERLEELEN 316
Score = 33.9 bits (78), Expect = 1.0
Identities = 20/88 (22%), Positives = 40/88 (45%)
Query: 760 AKLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKLE 819
AKL E + E+L+ +L + +L+ E+ + + +EL +++E +++L
Sbjct: 232 AKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELL 291
Query: 820 RAEKLIGGLGGEKTRWSEASANLSKALV 847
++ I L GE + E L L
Sbjct: 292 ELKEEIEELEGEISLLRERLEELENELE 319
Score = 33.5 bits (77), Expect = 1.3
Identities = 22/100 (22%), Positives = 46/100 (46%)
Query: 761 KLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKLER 820
++ E E + EKL+ +L + +L+ L++EL + +K+ELED+++ +++ E
Sbjct: 829 EIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEE 888
Query: 821 AEKLIGGLGGEKTRWSEASANLSKALVNCIGDILICAGII 860
E+ + L E E L + L + +
Sbjct: 889 LEEELRELESELAELKEEIEKLRERLEELEAKLERLEVEL 928
Score = 33.1 bits (76), Expect = 1.8
Identities = 16/67 (23%), Positives = 36/67 (53%)
Query: 759 KAKLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKL 818
+ KL E E + ++L + +L + + + L DEL + ++K+ELE+++ + +L
Sbjct: 841 EEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESEL 900
Query: 819 ERAEKLI 825
++ I
Sbjct: 901 AELKEEI 907
Score = 32.8 bits (75), Expect = 2.3
Identities = 20/90 (22%), Positives = 39/90 (43%)
Query: 757 PKKAKLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQ 816
K + + E+L AQL + +L++L++EL +EL Q+E ++
Sbjct: 657 RNKRSSLAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELER 716
Query: 817 KLERAEKLIGGLGGEKTRWSEASANLSKAL 846
+LE ++ + L E + L + L
Sbjct: 717 QLEELKRELAALEEELEQLQSRLEELEEEL 746
Score = 32.4 bits (74), Expect = 2.4
Identities = 14/67 (20%), Positives = 35/67 (52%)
Query: 759 KAKLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKL 818
+ +L E E + E+L A+ + +L+ L +E + ++ +ELE ++ K+++
Sbjct: 848 EEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEI 907
Query: 819 ERAEKLI 825
E+ + +
Sbjct: 908 EKLRERL 914
Score = 32.4 bits (74), Expect = 2.8
Identities = 21/99 (21%), Positives = 43/99 (43%), Gaps = 4/99 (4%)
Query: 752 IKIVGPKKAKLAEAEADYAVQMEKLNSKRAQLATVLGKLQA----LRDELAQKSKDKKEL 807
I+ + K+ L E + ++E+ + L L L+ L E+ + ++ +EL
Sbjct: 781 IEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEEL 840
Query: 808 EDQIELCKQKLERAEKLIGGLGGEKTRWSEASANLSKAL 846
E++++ +++LE EK + L E L L
Sbjct: 841 EEKLDELEEELEELEKELEELKEELEELEAEKEELEDEL 879
Score = 31.2 bits (71), Expect = 6.7
Identities = 22/96 (22%), Positives = 39/96 (40%), Gaps = 4/96 (4%)
Query: 758 KKAKLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKK----ELEDQIEL 813
+ +L E + KL + +L LQ +EL ++ ++ + LE ++E
Sbjct: 759 RLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELES 818
Query: 814 CKQKLERAEKLIGGLGGEKTRWSEASANLSKALVNC 849
+Q+ ER E+ I L E E L + L
Sbjct: 819 LEQRRERLEQEIEELEEEIEELEEKLDELEEELEEL 854
Score = 30.5 bits (69), Expect = 9.3
Identities = 16/65 (24%), Positives = 36/65 (55%)
Query: 759 KAKLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKL 818
K ++ E E+L + +L + +L+ L+ EL + +++ +ELE+Q+E + +L
Sbjct: 403 KREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRL 462
Query: 819 ERAEK 823
+ E+
Sbjct: 463 KELER 467
>gnl|CDD|227925 COG5638, COG5638, Uncharacterized conserved protein [Function
unknown].
Length = 622
Score = 37.5 bits (86), Expect = 0.077
Identities = 17/61 (27%), Positives = 30/61 (49%)
Query: 1577 EGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSR 1636
E EK +K +++++ +K+++ KK K K KK+ KK KK K ++
Sbjct: 431 ETTIEKLDRKLRERQENRKERQLKKTKDDSDVDLKDKKESINKKNKKGKHAIERTAASKE 490
Query: 1637 E 1637
E
Sbjct: 491 E 491
Score = 35.5 bits (81), Expect = 0.29
Identities = 17/61 (27%), Positives = 30/61 (49%)
Query: 1588 KKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGGGGEKELV 1647
K +K +++++ +K+++ K K K KK+ KK KK K R E EL+
Sbjct: 436 KLDRKLRERQENRKERQLKKTKDDSDVDLKDKKESINKKNKKGKHAIERTAASKEELELI 495
Query: 1648 Q 1648
+
Sbjct: 496 K 496
>gnl|CDD|129694 TIGR00606, rad50, rad50. All proteins in this family for which
functions are known are involvedin recombination,
recombinational repair, and/or non-homologous end
joining.They are components of an exonuclease complex
with MRE11 homologs. This family is distantly related to
the SbcC family of bacterial proteins.This family is
based on the phylogenomic analysis of JA Eisen (1999,
Ph.D. Thesis, Stanford University).
Length = 1311
Score = 37.3 bits (86), Expect = 0.079
Identities = 24/113 (21%), Positives = 45/113 (39%), Gaps = 10/113 (8%)
Query: 1515 VIIKKSLQEVRQAVKGLIVMSKELEEINTSIMFGKIPQAWASKSYPSLKPLGSYIVDLLA 1574
+ I +LQ +Q + L+ +S E++ + I + PL +++
Sbjct: 874 LQIGTNLQRRQQFEEQLVELSTEVQSLIREI----------KDAKEQDSPLETFLEKDQQ 923
Query: 1575 RREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKK 1627
+E K+ KK + K K+K K Y K + K + K K+K+
Sbjct: 924 EKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDGKDDYLKQKE 976
>gnl|CDD|217286 pfam02919, Topoisom_I_N, Eukaryotic DNA topoisomerase I, DNA binding
fragment. Topoisomerase I promotes the relaxation of DNA
superhelical tension by introducing a transient
single-stranded break in duplex DNA and are vital for the
processes of replication, transcription, and
recombination. This family may be more than one
structural domain.
Length = 215
Score = 36.0 bits (84), Expect = 0.083
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Query: 1582 KKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKK---KKKKKKKKKKKKKKKKKY 1634
+K KK+ K +K +Y + +K+KKK K++KK K++K K ++ Y
Sbjct: 69 RKILKKEGGAIIKDLEKCDFTPIYEYFEAEKEKKKAMSKEEKKAIKEEKDKLEEPY 124
Score = 33.7 bits (78), Expect = 0.48
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYK 1608
EK+KKK K++KK K++K K ++ Y
Sbjct: 98 EKEKKKAMSKEEKKAIKEEKDKLEEPYG 125
Score = 30.2 bits (69), Expect = 6.1
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKY 1607
EKKK K++KK K++K K ++ Y
Sbjct: 100 EKKKAMSKEEKKAIKEEKDKLEEPYGY 126
Score = 30.2 bits (69), Expect = 6.6
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYK 1608
E +K+KKK K++KK K++K K +
Sbjct: 96 EAEKEKKKAMSKEEKKAIKEEKDKLEEP 123
Score = 30.2 bits (69), Expect = 7.9
Identities = 13/50 (26%), Positives = 25/50 (50%)
Query: 1588 KKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSRE 1637
+K KK+ K +K + + + +K+KKK K++KK K ++
Sbjct: 69 RKILKKEGGAIIKDLEKCDFTPIYEYFEAEKEKKKAMSKEEKKAIKEEKD 118
>gnl|CDD|178945 PRK00247, PRK00247, putative inner membrane protein translocase
component YidC; Validated.
Length = 429
Score = 37.1 bits (86), Expect = 0.083
Identities = 10/64 (15%), Positives = 32/64 (50%)
Query: 1575 RREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKY 1634
E KK + +K + K +KK+ +K++ ++ ++ ++++ + + ++ K
Sbjct: 326 HAENAEIKKTRTAEKNEAKARKKEIAQKRRAAEREINREARQERAAAMARARARRAAVKA 385
Query: 1635 SREG 1638
++G
Sbjct: 386 KKKG 389
Score = 36.0 bits (83), Expect = 0.19
Identities = 10/64 (15%), Positives = 30/64 (46%)
Query: 1574 ARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
R + E K +KK+ +K++ +++ ++ ++ + + + ++ K KKK
Sbjct: 335 TRTAEKNEAKARKKEIAQKRRAAEREINREARQERAAAMARARARRAAVKAKKKGLIDAS 394
Query: 1634 YSRE 1637
+ +
Sbjct: 395 PNED 398
Score = 35.6 bits (82), Expect = 0.25
Identities = 10/63 (15%), Positives = 32/63 (50%)
Query: 1575 RREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKY 1634
++ EK + K +KK+ +K++ +++ ++ ++++ + + ++ K KKK
Sbjct: 333 KKTRTAEKNEAKARKKEIAQKRRAAEREINREARQERAAAMARARARRAAVKAKKKGLID 392
Query: 1635 SRE 1637
+
Sbjct: 393 ASP 395
Score = 35.2 bits (81), Expect = 0.29
Identities = 9/60 (15%), Positives = 30/60 (50%)
Query: 1574 ARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
+ +K + K +KK+ +K++ +++ ++ ++++ + + ++ K KKK
Sbjct: 329 NAEIKKTRTAEKNEAKARKKEIAQKRRAAEREINREARQERAAAMARARARRAAVKAKKK 388
Score = 34.8 bits (80), Expect = 0.35
Identities = 15/73 (20%), Positives = 33/73 (45%), Gaps = 8/73 (10%)
Query: 1573 LARREGRGEKKKKKKKKKKKKKKKK--------KKKKKKKKKYKKKKKKKKKKKKKKKKK 1624
+R EK+K+KK ++ + + + + + KK + +K + K +K
Sbjct: 288 AEQRAQYREKQKEKKAFLWTLRRNRLRMIITPWRAPELHAENAEIKKTRTAEKNEAKARK 347
Query: 1625 KKKKKKKKKYSRE 1637
K+ +K++ RE
Sbjct: 348 KEIAQKRRAAERE 360
>gnl|CDD|218435 pfam05104, Rib_recp_KP_reg, Ribosome receptor lysine/proline rich
region. This highly conserved region is found towards
the C-terminus of the transmembrane domain. The function
is unclear.
Length = 151
Score = 35.3 bits (81), Expect = 0.085
Identities = 17/39 (43%), Positives = 26/39 (66%)
Query: 1594 KKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKK 1632
K++K+ K + +K KKKK+K +KK K KKK++K K
Sbjct: 12 KQRKESGKTQSQKSDKKKKEKVSEKKGKSKKKEEKPNGK 50
Score = 35.3 bits (81), Expect = 0.093
Identities = 17/39 (43%), Positives = 26/39 (66%)
Query: 1586 KKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKK 1624
K++K+ K + +K KKKK+K +KK K KKK++K K
Sbjct: 12 KQRKESGKTQSQKSDKKKKEKVSEKKGKSKKKEEKPNGK 50
Score = 35.0 bits (80), Expect = 0.14
Identities = 19/47 (40%), Positives = 27/47 (57%)
Query: 1602 KKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGGGGEKELVQ 1648
K++K+ K + +K KKKK+K +KK K KKK + G E E Q
Sbjct: 12 KQRKESGKTQSQKSDKKKKEKVSEKKGKSKKKEEKPNGKIPEHEPNQ 58
Score = 35.0 bits (80), Expect = 0.14
Identities = 17/39 (43%), Positives = 26/39 (66%)
Query: 1585 KKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKK 1623
K++K+ K + +K KKKK+K +KK K KKK++K K
Sbjct: 12 KQRKESGKTQSQKSDKKKKEKVSEKKGKSKKKEEKPNGK 50
Score = 34.6 bits (79), Expect = 0.16
Identities = 16/35 (45%), Positives = 25/35 (71%)
Query: 1599 KKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
K++K+ K + +K KKKK+K +KK K KKK++K
Sbjct: 12 KQRKESGKTQSQKSDKKKKEKVSEKKGKSKKKEEK 46
Score = 34.6 bits (79), Expect = 0.18
Identities = 17/39 (43%), Positives = 25/39 (64%)
Query: 1588 KKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKK 1626
K++K+ K + +K KKKK K +KK K KKK++K K
Sbjct: 12 KQRKESGKTQSQKSDKKKKEKVSEKKGKSKKKEEKPNGK 50
Score = 34.2 bits (78), Expect = 0.22
Identities = 17/39 (43%), Positives = 26/39 (66%)
Query: 1593 KKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKK 1631
K++K+ K + +K KKKK+K +KK K KKK++K K
Sbjct: 12 KQRKESGKTQSQKSDKKKKEKVSEKKGKSKKKEEKPNGK 50
Score = 34.2 bits (78), Expect = 0.24
Identities = 17/39 (43%), Positives = 25/39 (64%)
Query: 1584 KKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKK 1622
K++K+ K + +K KKKK+K KK K KKK++K K
Sbjct: 12 KQRKESGKTQSQKSDKKKKEKVSEKKGKSKKKEEKPNGK 50
Score = 33.4 bits (76), Expect = 0.44
Identities = 17/43 (39%), Positives = 27/43 (62%)
Query: 1577 EGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKK 1619
E +++K+ K + +K KKKK+K +KK K KKK++K K
Sbjct: 8 EALAKQRKESGKTQSQKSDKKKKEKVSEKKGKSKKKEEKPNGK 50
Score = 33.0 bits (75), Expect = 0.48
Identities = 17/41 (41%), Positives = 24/41 (58%)
Query: 1573 LARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKK 1613
LA++ K + +K KKKK+K +KK K KKK +K K
Sbjct: 10 LAKQRKESGKTQSQKSDKKKKEKVSEKKGKSKKKEEKPNGK 50
Score = 32.3 bits (73), Expect = 0.86
Identities = 19/46 (41%), Positives = 27/46 (58%)
Query: 1567 SYIVDLLARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKK 1612
SY L +R+ G+ + +K KKKK+K +KK K KKK+ K K
Sbjct: 5 SYEEALAKQRKESGKTQSQKSDKKKKEKVSEKKGKSKKKEEKPNGK 50
Score = 32.3 bits (73), Expect = 0.96
Identities = 16/39 (41%), Positives = 25/39 (64%)
Query: 1589 KKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKK 1627
K++K+ K + +K KKK +K +KK K KKK++K K
Sbjct: 12 KQRKESGKTQSQKSDKKKKEKVSEKKGKSKKKEEKPNGK 50
Score = 32.3 bits (73), Expect = 1.00
Identities = 16/39 (41%), Positives = 25/39 (64%)
Query: 1595 KKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
K++K+ K + + KKKK+K +KK K KKK++K K
Sbjct: 12 KQRKESGKTQSQKSDKKKKEKVSEKKGKSKKKEEKPNGK 50
Score = 31.9 bits (72), Expect = 1.3
Identities = 16/39 (41%), Positives = 25/39 (64%)
Query: 1582 KKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKK 1620
K++K+ K + +K KKKK+K +K K KKK++K K
Sbjct: 12 KQRKESGKTQSQKSDKKKKEKVSEKKGKSKKKEEKPNGK 50
Score = 31.9 bits (72), Expect = 1.3
Identities = 16/39 (41%), Positives = 25/39 (64%)
Query: 1583 KKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKK 1621
K++K+ K + +K KKKK+K + K K KKK++K K
Sbjct: 12 KQRKESGKTQSQKSDKKKKEKVSEKKGKSKKKEEKPNGK 50
Score = 31.9 bits (72), Expect = 1.3
Identities = 16/39 (41%), Positives = 25/39 (64%)
Query: 1587 KKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKK 1625
K++K+ K + +K KKKK+ +KK K KKK++K K
Sbjct: 12 KQRKESGKTQSQKSDKKKKEKVSEKKGKSKKKEEKPNGK 50
Score = 31.9 bits (72), Expect = 1.3
Identities = 16/39 (41%), Positives = 25/39 (64%)
Query: 1590 KKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKK 1628
K++K+ K + +K KK K+K +KK K KKK++K K
Sbjct: 12 KQRKESGKTQSQKSDKKKKEKVSEKKGKSKKKEEKPNGK 50
Score = 31.9 bits (72), Expect = 1.3
Identities = 16/39 (41%), Positives = 25/39 (64%)
Query: 1591 KKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKK 1629
K++K+ K + +K K KK+K +KK K KKK++K K
Sbjct: 12 KQRKESGKTQSQKSDKKKKEKVSEKKGKSKKKEEKPNGK 50
>gnl|CDD|131610 TIGR02559, HrpB7, type III secretion protein HrpB7. This family of
genes is found in type III secretion operons in a narrow
range of species including Xanthomonas, Burkholderia and
Ralstonia.
Length = 158
Score = 35.7 bits (82), Expect = 0.086
Identities = 16/54 (29%), Positives = 26/54 (48%)
Query: 770 AVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKLERAEK 823
V L + A LQAL LA K ++ L+ QI++C+++ ER +
Sbjct: 82 DVLEAHLGAAEQAEAAARAALQALAAALAAKKREIARLDAQIDVCRERAERLRR 135
>gnl|CDD|217935 pfam04158, Sof1, Sof1-like domain. Sof1 is essential for cell growth
and is a component of the nucleolar rRNA processing
machinery.
Length = 88
Score = 33.8 bits (78), Expect = 0.090
Identities = 13/39 (33%), Positives = 25/39 (64%)
Query: 1584 KKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKK 1622
KK +K K++ K+ KK+K++ ++K+ K K ++KK
Sbjct: 48 KKAQKIKREMKEAKKRKEENRRKHSKPGSVPPKPERKKH 86
Score = 32.6 bits (75), Expect = 0.25
Identities = 13/39 (33%), Positives = 24/39 (61%)
Query: 1583 KKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKK 1621
KK +K K++ K+ KK+K++ ++K K K ++KK
Sbjct: 48 KKAQKIKREMKEAKKRKEENRRKHSKPGSVPPKPERKKH 86
Score = 32.2 bits (74), Expect = 0.32
Identities = 13/39 (33%), Positives = 24/39 (61%)
Query: 1588 KKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKK 1626
KK +K K++ K+ KK+K++ ++K K K ++KK
Sbjct: 48 KKAQKIKREMKEAKKRKEENRRKHSKPGSVPPKPERKKH 86
Score = 32.2 bits (74), Expect = 0.35
Identities = 13/39 (33%), Positives = 23/39 (58%)
Query: 1590 KKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKK 1628
KK +K K++ K+ KK+K + ++K K K ++KK
Sbjct: 48 KKAQKIKREMKEAKKRKEENRRKHSKPGSVPPKPERKKH 86
Score = 31.5 bits (72), Expect = 0.56
Identities = 13/39 (33%), Positives = 23/39 (58%)
Query: 1586 KKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKK 1624
KK +K K++ K+ KK+K++ + K K K ++KK
Sbjct: 48 KKAQKIKREMKEAKKRKEENRRKHSKPGSVPPKPERKKH 86
Score = 31.5 bits (72), Expect = 0.58
Identities = 13/39 (33%), Positives = 23/39 (58%)
Query: 1592 KKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKK 1630
KK +K K++ K+ KK K++ ++K K K ++KK
Sbjct: 48 KKAQKIKREMKEAKKRKEENRRKHSKPGSVPPKPERKKH 86
Score = 31.5 bits (72), Expect = 0.68
Identities = 13/39 (33%), Positives = 23/39 (58%)
Query: 1587 KKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKK 1625
KK +K K++ K+ KK+K++ +K K K ++KK
Sbjct: 48 KKAQKIKREMKEAKKRKEENRRKHSKPGSVPPKPERKKH 86
Score = 31.5 bits (72), Expect = 0.69
Identities = 13/39 (33%), Positives = 24/39 (61%)
Query: 1595 KKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
KK +K K++ K+ KK+K++ ++K K K ++KK
Sbjct: 48 KKAQKIKREMKEAKKRKEENRRKHSKPGSVPPKPERKKH 86
Score = 31.1 bits (71), Expect = 0.79
Identities = 13/39 (33%), Positives = 23/39 (58%)
Query: 1589 KKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKK 1627
KK +K K++ K+ KK+K+ ++K K K ++KK
Sbjct: 48 KKAQKIKREMKEAKKRKEENRRKHSKPGSVPPKPERKKH 86
Score = 30.7 bits (70), Expect = 1.3
Identities = 10/36 (27%), Positives = 21/36 (58%)
Query: 1579 RGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKK 1614
+ K++ K+ KK+K++ ++K K K ++KK
Sbjct: 51 QKIKREMKEAKKRKEENRRKHSKPGSVPPKPERKKH 86
Score = 30.3 bits (69), Expect = 1.6
Identities = 12/39 (30%), Positives = 23/39 (58%)
Query: 1594 KKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKK 1632
KK +K K++ K+ K+K++ ++K K K ++KK
Sbjct: 48 KKAQKIKREMKEAKKRKEENRRKHSKPGSVPPKPERKKH 86
Score = 29.9 bits (68), Expect = 2.0
Identities = 12/39 (30%), Positives = 23/39 (58%)
Query: 1593 KKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKK 1631
KK +K K++ K+ K +K++ ++K K K ++KK
Sbjct: 48 KKAQKIKREMKEAKKRKEENRRKHSKPGSVPPKPERKKH 86
Score = 29.6 bits (67), Expect = 2.7
Identities = 12/39 (30%), Positives = 23/39 (58%)
Query: 1591 KKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKK 1629
KK +K K++ K+ KK+ ++ ++K K K ++KK
Sbjct: 48 KKAQKIKREMKEAKKRKEENRRKHSKPGSVPPKPERKKH 86
Score = 29.2 bits (66), Expect = 3.9
Identities = 11/36 (30%), Positives = 22/36 (61%)
Query: 1582 KKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKK 1617
+K K++ K+ KK+K++ ++K K K ++KK
Sbjct: 51 QKIKREMKEAKKRKEENRRKHSKPGSVPPKPERKKH 86
Score = 28.8 bits (65), Expect = 5.6
Identities = 12/38 (31%), Positives = 23/38 (60%)
Query: 1582 KKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKK 1619
K +K K++ K+ KK+K++ ++K K K ++KK
Sbjct: 49 KAQKIKREMKEAKKRKEENRRKHSKPGSVPPKPERKKH 86
>gnl|CDD|222977 PHA03089, PHA03089, late transcription factor VLTF-4; Provisional.
Length = 191
Score = 35.9 bits (83), Expect = 0.093
Identities = 17/40 (42%), Positives = 24/40 (60%)
Query: 1587 KKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKK 1626
+ KK KKKK +KKK KK KKKKK+K++ + +
Sbjct: 44 EIPSKKTSKKKKTTPRKKKTTKKTKKKKKEKEEVPELAAE 83
Score = 35.6 bits (82), Expect = 0.13
Identities = 20/53 (37%), Positives = 30/53 (56%)
Query: 1582 KKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKY 1634
KK KKKK +KKK KK KKKKK K++ + ++ ++ ++ KK Y
Sbjct: 48 KKTSKKKKTTPRKKKTTKKTKKKKKEKEEVPELAAEELSDSEENEENDKKVDY 100
Score = 34.8 bits (80), Expect = 0.19
Identities = 17/40 (42%), Positives = 24/40 (60%)
Query: 1584 KKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKK 1623
+ KK KKKK +KKK KK KKKKK+K++ + +
Sbjct: 44 EIPSKKTSKKKKTTPRKKKTTKKTKKKKKEKEEVPELAAE 83
Score = 34.8 bits (80), Expect = 0.21
Identities = 17/40 (42%), Positives = 24/40 (60%)
Query: 1588 KKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKK 1627
+ KK KKKK +KKK KK KKKKK+K++ + +
Sbjct: 44 EIPSKKTSKKKKTTPRKKKTTKKTKKKKKEKEEVPELAAE 83
Score = 34.8 bits (80), Expect = 0.21
Identities = 17/40 (42%), Positives = 24/40 (60%)
Query: 1593 KKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKK 1632
+ KK KKKK +KKK KK KKKKK+K++ + +
Sbjct: 44 EIPSKKTSKKKKTTPRKKKTTKKTKKKKKEKEEVPELAAE 83
Score = 34.4 bits (79), Expect = 0.24
Identities = 17/45 (37%), Positives = 25/45 (55%)
Query: 1594 KKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREG 1638
+ KK KKKK +KKK KK KKKKK+K++ + + +
Sbjct: 44 EIPSKKTSKKKKTTPRKKKTTKKTKKKKKEKEEVPELAAEELSDS 88
Score = 34.0 bits (78), Expect = 0.33
Identities = 17/40 (42%), Positives = 23/40 (57%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKK 1620
E KK KKKK +KKK KK KK KK+K++ + +
Sbjct: 44 EIPSKKTSKKKKTTPRKKKTTKKTKKKKKEKEEVPELAAE 83
Score = 34.0 bits (78), Expect = 0.34
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 1583 KKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKK 1622
+ KK KKKK +KKK KK KKKK+K++ + +
Sbjct: 44 EIPSKKTSKKKKTTPRKKKTTKKTKKKKKEKEEVPELAAE 83
Score = 34.0 bits (78), Expect = 0.38
Identities = 17/40 (42%), Positives = 23/40 (57%)
Query: 1592 KKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKK 1631
+ KK KKKK KKK KK KKKKK+K++ + +
Sbjct: 44 EIPSKKTSKKKKTTPRKKKTTKKTKKKKKEKEEVPELAAE 83
Score = 34.0 bits (78), Expect = 0.38
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 1589 KKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKK 1628
+ KK KKKK +KK KK KKKKK+K++ + +
Sbjct: 44 EIPSKKTSKKKKTTPRKKKTTKKTKKKKKEKEEVPELAAE 83
Score = 34.0 bits (78), Expect = 0.38
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 1586 KKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKK 1625
+ KK KKKK +KKK K KKKKK+K++ + +
Sbjct: 44 EIPSKKTSKKKKTTPRKKKTTKKTKKKKKEKEEVPELAAE 83
Score = 34.0 bits (78), Expect = 0.41
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 1585 KKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKK 1624
+ KK KKKK +KKK K KKKKK+K++ + +
Sbjct: 44 EIPSKKTSKKKKTTPRKKKTTKKTKKKKKEKEEVPELAAE 83
Score = 33.6 bits (77), Expect = 0.50
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 1591 KKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKK 1630
+ KK KKKK + KK KK KKKKK+K++ + +
Sbjct: 44 EIPSKKTSKKKKTTPRKKKTTKKTKKKKKEKEEVPELAAE 83
Score = 33.2 bits (76), Expect = 0.57
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 1590 KKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKK 1629
+ KK KKKK +K K KK KKKKK+K++ + +
Sbjct: 44 EIPSKKTSKKKKTTPRKKKTTKKTKKKKKEKEEVPELAAE 83
Score = 33.2 bits (76), Expect = 0.58
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 1582 KKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKK 1621
+ KK KKKK +KKK KK K KKK+K++ + +
Sbjct: 44 EIPSKKTSKKKKTTPRKKKTTKKTKKKKKEKEEVPELAAE 83
Score = 33.2 bits (76), Expect = 0.75
Identities = 18/61 (29%), Positives = 30/61 (49%)
Query: 1583 KKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGGGG 1642
KKKK +KKK KK KKKKK+K + + ++ ++ ++ KK + +
Sbjct: 51 SKKKKTTPRKKKTTKKTKKKKKEKEEVPELAAEELSDSEENEENDKKVDYELPKVQNTAA 110
Query: 1643 E 1643
E
Sbjct: 111 E 111
Score = 32.9 bits (75), Expect = 0.82
Identities = 17/64 (26%), Positives = 29/64 (45%)
Query: 1582 KKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGGG 1641
KKKK +KKK KK KKKKK+K+ + ++ ++ ++ KK + +
Sbjct: 51 SKKKKTTPRKKKTTKKTKKKKKEKEEVPELAAEELSDSEENEENDKKVDYELPKVQNTAA 110
Query: 1642 GEKE 1645
Sbjct: 111 EVNH 114
Score = 29.8 bits (67), Expect = 7.9
Identities = 15/40 (37%), Positives = 18/40 (45%)
Query: 1608 KKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGGGGEKELV 1647
+ KK KKKK +KKK KK KK +E E
Sbjct: 44 EIPSKKTSKKKKTTPRKKKTTKKTKKKKKEKEEVPELAAE 83
>gnl|CDD|220640 pfam10234, Cluap1, Clusterin-associated protein-1. This protein is
conserved from worms to humans. The protein of 413 amino
acids contains a central coiled-coil domain, possibly
the region that binds to clusterin. Cluap1 expression is
highest in the nucleus and gradually increases during
late S to G2/M phases of the cell cycle and returns to
the basal level in the G0/G1 phases. In addition, it is
upregulated in colon cancer tissues compared to
corresponding non-cancerous mucosa. It thus plays a
crucial role in the life of the cell.
Length = 269
Score = 36.5 bits (85), Expect = 0.095
Identities = 17/49 (34%), Positives = 27/49 (55%)
Query: 780 RAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKLERAEKLIGGL 828
+ + + +LQ L+ EL D+ LE +IE KQ+LER +K + L
Sbjct: 170 KEAIKNLAARLQQLQAELDNLKSDEANLEAKIERKKQELERTQKRLQAL 218
>gnl|CDD|130141 TIGR01069, mutS2, MutS2 family protein. Function of MutS2 is
unknown. It should not be considered a DNA mismatch
repair protein. It is likely a DNA mismatch binding
protein of unknown cellular function [DNA metabolism,
Other].
Length = 771
Score = 37.1 bits (86), Expect = 0.10
Identities = 31/158 (19%), Positives = 53/158 (33%), Gaps = 24/158 (15%)
Query: 1493 ILYNQSMNTVLKQELIRYNRLTVIIKKSLQEVRQAVKGLIVMSKELEEINTSIMFGKIPQ 1552
L + + + + N + +E ++A+K L KE+E I + KI +
Sbjct: 543 KLKKELEQEMEELKERERN----KKLELEKEAQEALKALK---KEVESIIRELKEKKIHK 595
Query: 1553 AWASKSYPSLKPLGSY-------IVDLLARREGRGEKKKKKKKKKKKKKKKKKKK----- 1600
A KS L L + A + G + + +K K + K
Sbjct: 596 AKEIKSIEDLVKLKETKQKIPQKPTNFQADKIGDKVRIRYFGQKGKIVQILGGNKWNVTV 655
Query: 1601 -----KKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
K + +K K KK K K K + K+
Sbjct: 656 GGMRMKVHGSELEKINKAPPPKKFKVPKTTKPEPKEAS 693
Score = 30.9 bits (70), Expect = 6.7
Identities = 12/56 (21%), Positives = 36/56 (64%)
Query: 1577 EGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKK 1632
E +K+ ++K + +K K+++K KK+ +++ ++ K++++ KK + +K+ ++
Sbjct: 518 EKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKERERNKKLELEKEAQEA 573
>gnl|CDD|238356 cd00660, Topoisomer_IB_N, Topoisomer_IB_N: N-terminal DNA binding
fragment found in eukaryotic DNA topoisomerase (topo) IB
proteins similar to the monomeric yeast and human topo I
and heterodimeric topo I from Leishmania donvanni. Topo I
enzymes are divided into: topo type IA (bacterial) and
type IB (eukaryotic). Topo I relaxes superhelical tension
in duplex DNA by creating a single-strand nick, the
broken strand can then rotate around the unbroken strand
to remove DNA supercoils and, the nick is religated,
liberating topo I. These enzymes regulate the topological
changes that accompany DNA replication, transcription and
other nuclear processes. Human topo I is the target of a
diverse set of anticancer drugs including camptothecins
(CPTs). CPTs bind to the topo I-DNA complex and inhibit
re-ligation of the single-strand nick, resulting in the
accumulation of topo I-DNA adducts. In addition to
differences in structure and some biochemical properties,
Trypanosomatid parasite topo I differ from human topo I
in their sensitivity to CPTs and other classical topo I
inhibitors. Trypanosomatid topos I play putative roles in
organizing the kinetoplast DNA network unique to these
parasites. This family may represent more than one
structural domain.
Length = 215
Score = 36.1 bits (84), Expect = 0.10
Identities = 18/56 (32%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
Query: 1582 KKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKK---KKKKKKKKKKKKKKKKKY 1634
+K K++K KK K +Y +++K+KKK K++KK K++K+K ++ Y
Sbjct: 68 RKILTKEEKHIIKKLSKCDFTPIYQYFEEEKEKKKAMSKEEKKAIKEEKEKLEEPY 123
Score = 33.8 bits (78), Expect = 0.50
Identities = 12/28 (42%), Positives = 20/28 (71%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYK 1608
EK+KKK K++KK K++K+K ++ Y
Sbjct: 97 EKEKKKAMSKEEKKAIKEEKEKLEEPYG 124
Score = 30.7 bits (70), Expect = 5.0
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKY 1607
EKKK K++KK K++K+K ++ Y
Sbjct: 99 EKKKAMSKEEKKAIKEEKEKLEEPYGY 125
Score = 29.9 bits (68), Expect = 8.3
Identities = 16/53 (30%), Positives = 28/53 (52%)
Query: 1585 KKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSRE 1637
+K K++K KK K + +++K+KKK K++KK K++K E
Sbjct: 68 RKILTKEEKHIIKKLSKCDFTPIYQYFEEEKEKKKAMSKEEKKAIKEEKEKLE 120
>gnl|CDD|113514 pfam04747, DUF612, Protein of unknown function, DUF612. This family
includes several uncharacterized proteins from
Caenorhabditis elegans.
Length = 517
Score = 36.6 bits (83), Expect = 0.11
Identities = 20/62 (32%), Positives = 41/62 (66%)
Query: 1574 ARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
A + R ++++ K+ K ++++ +K+++KK+ KK + +KKK+K K +K +K +K KK
Sbjct: 107 AEAKKRAAQEEEHKQWKAEQERIQKEQEKKEADLKKLQAEKKKEKAVKAEKAEKAEKTKK 166
Query: 1634 YS 1635
S
Sbjct: 167 AS 168
Score = 34.3 bits (77), Expect = 0.59
Identities = 18/61 (29%), Positives = 38/61 (62%)
Query: 1576 REGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYS 1635
R E KK+ ++++ K+ K ++++ +K++ KK+ KK + +KKK+K K +K +K
Sbjct: 103 RRAEAEAKKRAAQEEEHKQWKAEQERIQKEQEKKEADLKKLQAEKKKEKAVKAEKAEKAE 162
Query: 1636 R 1636
+
Sbjct: 163 K 163
Score = 33.5 bits (75), Expect = 0.96
Identities = 21/76 (27%), Positives = 44/76 (57%)
Query: 1574 ARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
A E + ++++ K+ K ++++ +K+++KK+ KK + +KKK+K K +K +K +K
Sbjct: 105 AEAEAKKRAAQEEEHKQWKAEQERIQKEQEKKEADLKKLQAEKKKEKAVKAEKAEKAEKT 164
Query: 1634 YSREGGGGGEKELVQK 1649
E+E+V K
Sbjct: 165 KKASTPAPVEEEIVVK 180
Score = 32.7 bits (73), Expect = 1.7
Identities = 18/59 (30%), Positives = 37/59 (62%)
Query: 1579 RGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSRE 1637
R E + KK+ ++++ K+ K ++++ +K ++KK+ KK + +KKK+K K +K E
Sbjct: 104 RAEAEAKKRAAQEEEHKQWKAEQERIQKEQEKKEADLKKLQAEKKKEKAVKAEKAEKAE 162
Score = 32.7 bits (73), Expect = 2.0
Identities = 17/63 (26%), Positives = 40/63 (63%)
Query: 1574 ARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
A +E R + + KK+ ++++ K+ K ++++ + +++KK+ KK + +KKK+K K +K
Sbjct: 98 AEKEARRAEAEAKKRAAQEEEHKQWKAEQERIQKEQEKKEADLKKLQAEKKKEKAVKAEK 157
Query: 1634 YSR 1636
+
Sbjct: 158 AEK 160
Score = 31.6 bits (70), Expect = 3.9
Identities = 15/58 (25%), Positives = 38/58 (65%)
Query: 1574 ARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKK 1631
A++ E ++ + + KK+ ++++ K+ K ++ + +K+++KK+ KK + +KKK+K
Sbjct: 94 AKKAAEKEARRAEAEAKKRAAQEEEHKQWKAEQERIQKEQEKKEADLKKLQAEKKKEK 151
Score = 31.6 bits (70), Expect = 4.4
Identities = 18/69 (26%), Positives = 37/69 (53%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGG 1640
+ ++ +K KK +KKK +K+ K + +K KK +K+ ++ + + KK+ +
Sbjct: 63 QPQQVEKVKKSEKKKAQKQIAKDHEAEQKVNAKKAAEKEARRAEAEAKKRAAQEEEHKQW 122
Query: 1641 GGEKELVQK 1649
E+E +QK
Sbjct: 123 KAEQERIQK 131
Score = 30.4 bits (67), Expect = 9.0
Identities = 17/65 (26%), Positives = 41/65 (63%), Gaps = 4/65 (6%)
Query: 1584 KKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKK----KKKKKKKKKKKKYSREGG 1639
+K+ ++ + + KK+ ++++ K++K ++++ +K+++KK KK + +KKK+K E
Sbjct: 99 EKEARRAEAEAKKRAAQEEEHKQWKAEQERIQKEQEKKEADLKKLQAEKKKEKAVKAEKA 158
Query: 1640 GGGEK 1644
EK
Sbjct: 159 EKAEK 163
>gnl|CDD|223625 COG0551, TopA, Zn-finger domain associated with topoisomerase type I
[DNA replication, recombination, and repair].
Length = 140
Score = 34.8 bits (80), Expect = 0.12
Identities = 16/46 (34%), Positives = 22/46 (47%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKK 1626
EK K K+KK K +K +KK+KKK + K K + K
Sbjct: 95 EKPKPKEKKCPKCGSRKLVEKKEKKKGVFLECSNKPCCLKVENLKN 140
Score = 34.1 bits (78), Expect = 0.20
Identities = 18/71 (25%), Positives = 27/71 (38%), Gaps = 10/71 (14%)
Query: 1578 GRGEKKKKKKKKKKK----------KKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKK 1627
G+G KK + K + +K K K+KK +K +KK+KKK +
Sbjct: 67 GKGLLVLKKGRFGKNFLGCSNYPKCRFTEKPKPKEKKCPKCGSRKLVEKKEKKKGVFLEC 126
Query: 1628 KKKKKKYSREG 1638
K E
Sbjct: 127 SNKPCCLKVEN 137
Score = 34.1 bits (78), Expect = 0.23
Identities = 15/46 (32%), Positives = 21/46 (45%)
Query: 1585 KKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKK 1630
+K K K+KK K +K +KK KKK + K K + K
Sbjct: 95 EKPKPKEKKCPKCGSRKLVEKKEKKKGVFLECSNKPCCLKVENLKN 140
Score = 32.9 bits (75), Expect = 0.57
Identities = 15/51 (29%), Positives = 23/51 (45%)
Query: 1577 EGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKK 1627
+ R +K K K+KK K +K +KK+KK + K K + K
Sbjct: 90 KCRFTEKPKPKEKKCPKCGSRKLVEKKEKKKGVFLECSNKPCCLKVENLKN 140
Score = 32.5 bits (74), Expect = 0.76
Identities = 14/56 (25%), Positives = 22/56 (39%)
Query: 1574 ARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKK 1629
+ +K K K+KK K +K +KK+ KK + K K + K
Sbjct: 85 CSNYPKCRFTEKPKPKEKKCPKCGSRKLVEKKEKKKGVFLECSNKPCCLKVENLKN 140
Score = 32.1 bits (73), Expect = 1.0
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 8/70 (11%)
Query: 1572 LLARREGRGEKK--------KKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKK 1623
LL ++GR K K + +K K K+KK K +K +KK+KKK + K
Sbjct: 70 LLVLKKGRFGKNFLGCSNYPKCRFTEKPKPKEKKCPKCGSRKLVEKKEKKKGVFLECSNK 129
Query: 1624 KKKKKKKKKK 1633
K + K
Sbjct: 130 PCCLKVENLK 139
Score = 31.4 bits (71), Expect = 1.6
Identities = 15/46 (32%), Positives = 21/46 (45%)
Query: 1588 KKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
+K K K+KK K +K KK+KKK + K K + K
Sbjct: 95 EKPKPKEKKCPKCGSRKLVEKKEKKKGVFLECSNKPCCLKVENLKN 140
Score = 30.6 bits (69), Expect = 3.6
Identities = 20/70 (28%), Positives = 27/70 (38%), Gaps = 16/70 (22%)
Query: 1581 EKKKKKKKKKK-----KKKKKKKKKKKKKKKY-----------KKKKKKKKKKKKKKKKK 1624
EK +K K K KK + K +K K K+KK K +K
Sbjct: 52 EKAIAEKTGVKCPKCGKGLLVLKKGRFGKNFLGCSNYPKCRFTEKPKPKEKKCPKCGSRK 111
Query: 1625 KKKKKKKKKY 1634
+KK+KKK
Sbjct: 112 LVEKKEKKKG 121
>gnl|CDD|191968 pfam08213, DUF1713, Mitochondrial domain of unknown function
(DUF1713). This domain is found at the C terminal end of
mitochondrial proteins of unknown function.
Length = 34
Score = 31.9 bits (73), Expect = 0.12
Identities = 11/29 (37%), Positives = 20/29 (68%)
Query: 1595 KKKKKKKKKKKKYKKKKKKKKKKKKKKKK 1623
+K+++K KK KYKK +K+ + ++K K
Sbjct: 6 LRKRRRKMKKHKYKKLRKRTRALRRKLDK 34
Score = 30.4 bits (69), Expect = 0.45
Identities = 10/29 (34%), Positives = 19/29 (65%)
Query: 1586 KKKKKKKKKKKKKKKKKKKKKYKKKKKKK 1614
+K+++K KK K KK +K+ + ++K K
Sbjct: 6 LRKRRRKMKKHKYKKLRKRTRALRRKLDK 34
Score = 28.8 bits (65), Expect = 1.6
Identities = 10/29 (34%), Positives = 19/29 (65%)
Query: 1600 KKKKKKKYKKKKKKKKKKKKKKKKKKKKK 1628
+K+++K KK K KK +K+ + ++K K
Sbjct: 6 LRKRRRKMKKHKYKKLRKRTRALRRKLDK 34
Score = 28.1 bits (63), Expect = 2.6
Identities = 10/29 (34%), Positives = 19/29 (65%)
Query: 1592 KKKKKKKKKKKKKKKYKKKKKKKKKKKKK 1620
+K+++K KK K KK +K+ + ++K K
Sbjct: 6 LRKRRRKMKKHKYKKLRKRTRALRRKLDK 34
Score = 28.1 bits (63), Expect = 3.0
Identities = 10/29 (34%), Positives = 19/29 (65%)
Query: 1588 KKKKKKKKKKKKKKKKKKKYKKKKKKKKK 1616
+K+++K KK K KK +K+ + ++K K
Sbjct: 6 LRKRRRKMKKHKYKKLRKRTRALRRKLDK 34
Score = 28.1 bits (63), Expect = 3.0
Identities = 10/29 (34%), Positives = 20/29 (68%)
Query: 1597 KKKKKKKKKKYKKKKKKKKKKKKKKKKKK 1625
+K+++K KK+K KK +K+ + ++K K
Sbjct: 6 LRKRRRKMKKHKYKKLRKRTRALRRKLDK 34
Score = 28.1 bits (63), Expect = 3.1
Identities = 9/29 (31%), Positives = 19/29 (65%)
Query: 1608 KKKKKKKKKKKKKKKKKKKKKKKKKKYSR 1636
+K+++K KK K KK +K+ + ++K +
Sbjct: 6 LRKRRRKMKKHKYKKLRKRTRALRRKLDK 34
Score = 28.1 bits (63), Expect = 3.1
Identities = 10/28 (35%), Positives = 19/28 (67%)
Query: 1582 KKKKKKKKKKKKKKKKKKKKKKKKKYKK 1609
+K+++K KK K KK +K+ + ++K K
Sbjct: 7 RKRRRKMKKHKYKKLRKRTRALRRKLDK 34
Score = 27.7 bits (62), Expect = 3.7
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 1591 KKKKKKKKKKKKKKKKYKKKKKKKKKKKK 1619
+K+++K KK K KK K+ + ++K K
Sbjct: 6 LRKRRRKMKKHKYKKLRKRTRALRRKLDK 34
Score = 27.7 bits (62), Expect = 4.2
Identities = 10/29 (34%), Positives = 19/29 (65%)
Query: 1585 KKKKKKKKKKKKKKKKKKKKKKYKKKKKK 1613
+K+++K KK K KK +K+ + ++K K
Sbjct: 6 LRKRRRKMKKHKYKKLRKRTRALRRKLDK 34
Score = 26.9 bits (60), Expect = 7.2
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 1604 KKKYKKKKKKKKKKKKKKKKKKKKKKKKK 1632
+K ++K KK K KK +K+ + ++K K
Sbjct: 6 LRKRRRKMKKHKYKKLRKRTRALRRKLDK 34
Score = 26.9 bits (60), Expect = 8.4
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 1584 KKKKKKKKKKKKKKKKKKKKKKKYKKKKK 1612
+K+++K KK K KK +K+ + +K K
Sbjct: 6 LRKRRRKMKKHKYKKLRKRTRALRRKLDK 34
Score = 26.5 bits (59), Expect = 9.7
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 1589 KKKKKKKKKKKKKKKKKKYKKKKKKKKKK 1617
+K+++K KK K KK +K + ++K K
Sbjct: 6 LRKRRRKMKKHKYKKLRKRTRALRRKLDK 34
>gnl|CDD|223599 COG0525, ValS, Valyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 877
Score = 36.8 bits (86), Expect = 0.12
Identities = 34/173 (19%), Positives = 59/173 (34%), Gaps = 37/173 (21%)
Query: 1479 PEQFDEEAAG------------RKYPILYNQSMNTVLKQELIRYNRLTVIIKKSLQEVRQ 1526
E DEEA R N S + LK L+ + ++ L+
Sbjct: 713 EELIDEEAEKEFELLKEIISAIRNLRAEMNLSPSAPLKVVLV----GSEELEDRLEANED 768
Query: 1527 AVKGL-------IVMSKELEEINTSIMFGKIPQAWASKSYPSLKPLGSYIVDLLARREGR 1579
+KGL I+ E PL I DL A
Sbjct: 769 DIKGLANLEELEILSPDPEEPPVEVTAVVGG--------AELFLPLAGLI-DLAAEL--- 816
Query: 1580 GEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKK 1632
+ +K+ +K +K+ + +KK + + K ++ +K+K+K + + K K
Sbjct: 817 --ARLEKELEKLEKEIDRIEKKLSNEGFVAKAPEEVVEKEKEKLAEYQVKLAK 867
>gnl|CDD|114011 pfam05262, Borrelia_P83, Borrelia P83/100 protein. This family
consists of several Borrelia P83/P100 antigen proteins.
Length = 489
Score = 36.5 bits (84), Expect = 0.13
Identities = 16/82 (19%), Positives = 38/82 (46%), Gaps = 3/82 (3%)
Query: 1569 IVDLLARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKK 1628
+ DL R K+ ++ K++ KK+ K ++K + + K++ + ++K+++ K
Sbjct: 200 MTDLKERESQEDAKRAQQLKEELDKKQIDADKAQQKADFAQDNADKQRDEVRQKQQEAKN 259
Query: 1629 KKKKKYSREGGGGGEKELVQKN 1650
K + E + V +N
Sbjct: 260 LPKPADTS---SPKEDKQVAEN 278
Score = 33.4 bits (76), Expect = 1.1
Identities = 14/59 (23%), Positives = 29/59 (49%)
Query: 1574 ARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKK 1632
A E K+ + +K++ +K + + KK ++ K K K K++ K +K+ + K
Sbjct: 264 ADTSSPKEDKQVAENQKREIEKAQIEIKKNDEEALKAKDHKAFDLKQESKASEKEAEDK 322
Score = 32.7 bits (74), Expect = 1.7
Identities = 13/55 (23%), Positives = 29/55 (52%)
Query: 1579 RGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
R E ++K+++ K K K+ K+ + +K++ +K + + KK ++ K K
Sbjct: 247 RDEVRQKQQEAKNLPKPADTSSPKEDKQVAENQKREIEKAQIEIKKNDEEALKAK 301
Score = 32.3 bits (73), Expect = 2.3
Identities = 14/61 (22%), Positives = 29/61 (47%)
Query: 1575 RREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKY 1634
R E R ++++ K K K+ K+ + K++ +K + + KK ++ K K K +
Sbjct: 247 RDEVRQKQQEAKNLPKPADTSSPKEDKQVAENQKREIEKAQIEIKKNDEEALKAKDHKAF 306
Query: 1635 S 1635
Sbjct: 307 D 307
Score = 32.3 bits (73), Expect = 2.3
Identities = 12/67 (17%), Positives = 32/67 (47%)
Query: 1571 DLLARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKK 1630
D ++ + K++ + ++K+++ K K K+ K+ + +K++ +K + +
Sbjct: 230 DKAQQKADFAQDNADKQRDEVRQKQQEAKNLPKPADTSSPKEDKQVAENQKREIEKAQIE 289
Query: 1631 KKKYSRE 1637
KK E
Sbjct: 290 IKKNDEE 296
Score = 31.1 bits (70), Expect = 5.3
Identities = 14/53 (26%), Positives = 31/53 (58%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
E +K++ +K + + KK ++ K K +K K++ K +K+ + K+ + +KK
Sbjct: 277 ENQKREIEKAQIEIKKNDEEALKAKDHKAFDLKQESKASEKEAEDKELEAQKK 329
Score = 31.1 bits (70), Expect = 5.9
Identities = 13/58 (22%), Positives = 28/58 (48%)
Query: 1580 GEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSRE 1637
K+ K+ + +K++ +K + + KK + K K K K++ K +K+ + E
Sbjct: 268 SPKEDKQVAENQKREIEKAQIEIKKNDEEALKAKDHKAFDLKQESKASEKEAEDKELE 325
>gnl|CDD|236081 PRK07735, PRK07735, NADH dehydrogenase subunit C; Validated.
Length = 430
Score = 36.5 bits (84), Expect = 0.13
Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 7/76 (9%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKK-------KKK 1633
EK K K K K K+K + + ++ +++K K K K K K+K
Sbjct: 163 EKAKAKAAAAAKAKAAALAKQKAAEAGEGTEEVTEEEKAKAKAKAAAAAKAKAAALAKQK 222
Query: 1634 YSREGGGGGEKELVQK 1649
S+ G G+++ K
Sbjct: 223 ASQGNGDSGDEDAKAK 238
Score = 32.3 bits (73), Expect = 2.4
Identities = 15/65 (23%), Positives = 30/65 (46%)
Query: 1574 ARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
A+ + K K K+K++ ++ +++++ K+K K K K K K+K
Sbjct: 127 AKAKAAAAAKAKAAALAKQKREGTEEVTEEEEETDKEKAKAKAAAAAKAKAAALAKQKAA 186
Query: 1634 YSREG 1638
+ EG
Sbjct: 187 EAGEG 191
>gnl|CDD|215494 PLN02915, PLN02915, cellulose synthase A [UDP-forming], catalytic
subunit.
Length = 1044
Score = 36.8 bits (85), Expect = 0.13
Identities = 17/52 (32%), Positives = 25/52 (48%)
Query: 1586 KKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSRE 1637
++ K KK KK KK ++ KK+KKK KK +KK + + E
Sbjct: 607 RRGKSKKSKKGKKGRRSLLGGLKKRKKKGGGGGSMMGKKYGRKKSQAVFDLE 658
Score = 33.4 bits (76), Expect = 1.2
Identities = 15/44 (34%), Positives = 21/44 (47%)
Query: 1585 KKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKK 1628
++ K KK KK KK ++ K+KKK KK +KK
Sbjct: 607 RRGKSKKSKKGKKGRRSLLGGLKKRKKKGGGGGSMMGKKYGRKK 650
Score = 31.8 bits (72), Expect = 4.4
Identities = 15/46 (32%), Positives = 21/46 (45%)
Query: 1595 KKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGG 1640
++ K KK KK K ++ KK+KKK KKY R+
Sbjct: 607 RRGKSKKSKKGKKGRRSLLGGLKKRKKKGGGGGSMMGKKYGRKKSQ 652
Score = 30.7 bits (69), Expect = 8.6
Identities = 17/43 (39%), Positives = 22/43 (51%)
Query: 1579 RGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKK 1621
RG+ KK KK KK ++ KK+KKK KK +KK
Sbjct: 608 RGKSKKSKKGKKGRRSLLGGLKKRKKKGGGGGSMMGKKYGRKK 650
Score = 30.7 bits (69), Expect = 9.6
Identities = 18/45 (40%), Positives = 22/45 (48%)
Query: 1578 GRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKK 1622
GR K KK KK KK ++ KK+KKK KK +KK
Sbjct: 606 GRRGKSKKSKKGKKGRRSLLGGLKKRKKKGGGGGSMMGKKYGRKK 650
>gnl|CDD|227446 COG5116, RPN2, 26S proteasome regulatory complex component
[Posttranslational modification, protein turnover,
chaperones].
Length = 926
Score = 36.5 bits (84), Expect = 0.13
Identities = 16/84 (19%), Positives = 37/84 (44%)
Query: 1550 IPQAWASKSYPSLKPLGSYIVDLLARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKK 1609
P+ + S S++ + + ++ + R ++K K+K K+ K + + + +
Sbjct: 767 YPRMYEEASGKSVRKVNTAVLSTTIKAAARAKQKPKEKGPNDKEIKIESPSVETEGERCT 826
Query: 1610 KKKKKKKKKKKKKKKKKKKKKKKK 1633
K++++K KKKK K
Sbjct: 827 IKQREEKGIDAPAILNVKKKKPYK 850
Score = 36.5 bits (84), Expect = 0.15
Identities = 14/61 (22%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
Query: 1582 KKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKK-----KKKKKKKKYSR 1636
K + K+K K+K K+ K + + + ++ K++++K KKKK Y
Sbjct: 792 KAAARAKQKPKEKGPNDKEIKIESPSVETEGERCTIKQREEKGIDAPAILNVKKKKPYKV 851
Query: 1637 E 1637
+
Sbjct: 852 D 852
Score = 34.2 bits (78), Expect = 0.68
Identities = 14/63 (22%), Positives = 27/63 (42%)
Query: 1574 ARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
A R + K+K K+ K + + + ++ K++++K KKKK K
Sbjct: 794 AARAKQKPKEKGPNDKEIKIESPSVETEGERCTIKQREEKGIDAPAILNVKKKKPYKVDN 853
Query: 1634 YSR 1636
+R
Sbjct: 854 MTR 856
>gnl|CDD|237631 PRK14162, PRK14162, heat shock protein GrpE; Provisional.
Length = 194
Score = 35.2 bits (81), Expect = 0.14
Identities = 15/64 (23%), Positives = 32/64 (50%)
Query: 1573 LARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKK 1632
+++ E EK +++ + KK+ K+ K++ +K+ + +K+ K K K +
Sbjct: 1 MSKEEFPSEKDLPQEETTDEAPKKEAKEAPKEEDQEKQNPVEDLEKEIADLKAKNKDLED 60
Query: 1633 KYSR 1636
KY R
Sbjct: 61 KYLR 64
>gnl|CDD|153340 cd07656, F-BAR_srGAP, The F-BAR (FES-CIP4 Homology and
Bin/Amphiphysin/Rvs) domain of Slit-Robo GTPase
Activating Proteins. F-BAR domains are dimerization
modules that bind and bend membranes and are found in
proteins involved in membrane dynamics and actin
reorganization. Slit-Robo GTPase Activating Proteins
(srGAPs) are Rho GAPs that interact with Robo1, the
transmembrane receptor of Slit proteins. Slit proteins
are secreted proteins that control axon guidance and the
migration of neurons and leukocytes. Vertebrates contain
three isoforms of srGAPs, all of which are expressed
during embryonic and early development in the nervous
system but with different localization and timing. srGAPs
contain an N-terminal F-BAR domain, a Rho GAP domain, and
a C-terminal SH3 domain. F-BAR domains form banana-shaped
dimers with a positively-charged concave surface that
binds to negatively-charged lipid membranes. They can
induce membrane deformation in the form of long tubules.
Length = 241
Score = 35.8 bits (83), Expect = 0.14
Identities = 13/42 (30%), Positives = 30/42 (71%)
Query: 1594 KKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYS 1635
+K K+ +K+++K+ + +KK ++ + KK +K+ +K++ KYS
Sbjct: 152 RKLKEAEKQEEKQEQSPEKKLERSRSSKKIEKEVEKRQAKYS 193
Score = 33.8 bits (78), Expect = 0.55
Identities = 11/39 (28%), Positives = 28/39 (71%)
Query: 1582 KKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKK 1620
K K+ +K+++K+++ +KK ++ + KK +K+ +K++ K
Sbjct: 153 KLKEAEKQEEKQEQSPEKKLERSRSSKKIEKEVEKRQAK 191
Score = 32.3 bits (74), Expect = 1.6
Identities = 13/47 (27%), Positives = 32/47 (68%)
Query: 1580 GEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKK 1626
E K ++K K+ +K+++K+++ +KK ++ + KK +K+ +K++ K
Sbjct: 145 AESKSAERKLKEAEKQEEKQEQSPEKKLERSRSSKKIEKEVEKRQAK 191
Score = 31.9 bits (73), Expect = 2.3
Identities = 11/40 (27%), Positives = 29/40 (72%)
Query: 1592 KKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKK 1631
+K K+ +K+++K+++ +KK ++ + KK +K+ +K++ K
Sbjct: 152 RKLKEAEKQEEKQEQSPEKKLERSRSSKKIEKEVEKRQAK 191
Score = 31.9 bits (73), Expect = 2.5
Identities = 11/40 (27%), Positives = 28/40 (70%)
Query: 1593 KKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKK 1632
+K K+ +K+++K++ +KK ++ + KK +K+ +K++ K
Sbjct: 152 RKLKEAEKQEEKQEQSPEKKLERSRSSKKIEKEVEKRQAK 191
Score = 31.1 bits (71), Expect = 4.3
Identities = 11/40 (27%), Positives = 29/40 (72%)
Query: 1591 KKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKK 1630
+K K+ +K+++K+++ +KK ++ + KK +K+ +K++ K
Sbjct: 152 RKLKEAEKQEEKQEQSPEKKLERSRSSKKIEKEVEKRQAK 191
Score = 30.8 bits (70), Expect = 5.3
Identities = 11/40 (27%), Positives = 28/40 (70%)
Query: 1590 KKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKK 1629
+K K+ +K+++K+++ KK ++ + KK +K+ +K++ K
Sbjct: 152 RKLKEAEKQEEKQEQSPEKKLERSRSSKKIEKEVEKRQAK 191
>gnl|CDD|218482 pfam05178, Kri1, KRI1-like family. The yeast member of this family
(Kri1p) is found to be required for 40S ribosome
biogenesis in the nucleolus.
Length = 99
Score = 33.8 bits (78), Expect = 0.14
Identities = 10/35 (28%), Positives = 27/35 (77%)
Query: 1582 KKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKK 1616
K++K+++K +++++ K+ K K+++ ++K +K KK
Sbjct: 1 KERKEEEKAQREEELKRLKNLKREEIEEKLEKIKK 35
Score = 31.8 bits (73), Expect = 0.55
Identities = 10/35 (28%), Positives = 26/35 (74%)
Query: 1594 KKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKK 1628
K++K+++K ++++ K+ K K+++ ++K +K KK
Sbjct: 1 KERKEEEKAQREEELKRLKNLKREEIEEKLEKIKK 35
Score = 31.5 bits (72), Expect = 0.78
Identities = 10/35 (28%), Positives = 27/35 (77%)
Query: 1593 KKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKK 1627
K++K+++K +++++ K+ K K+++ ++K +K KK
Sbjct: 1 KERKEEEKAQREEELKRLKNLKREEIEEKLEKIKK 35
Score = 31.5 bits (72), Expect = 0.79
Identities = 10/43 (23%), Positives = 27/43 (62%)
Query: 1602 KKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGGGGEK 1644
K++K+ +K +++++ K+ K K+++ ++K +K + G G
Sbjct: 1 KERKEEEKAQREEELKRLKNLKREEIEEKLEKIKKVAGLRGAD 43
Score = 31.5 bits (72), Expect = 0.88
Identities = 10/35 (28%), Positives = 27/35 (77%)
Query: 1587 KKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKK 1621
K++K+++K +++++ K+ K K+++ ++K +K KK
Sbjct: 1 KERKEEEKAQREEELKRLKNLKREEIEEKLEKIKK 35
Score = 31.5 bits (72), Expect = 0.93
Identities = 10/35 (28%), Positives = 26/35 (74%)
Query: 1584 KKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKK 1618
K++K+++K +++++ K+ K K+ + ++K +K KK
Sbjct: 1 KERKEEEKAQREEELKRLKNLKREEIEEKLEKIKK 35
Score = 31.1 bits (71), Expect = 1.3
Identities = 9/29 (31%), Positives = 21/29 (72%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKK 1609
EK +++++ K+ K K+++ ++K +K KK
Sbjct: 7 EKAQREEELKRLKNLKREEIEEKLEKIKK 35
Score = 30.7 bits (70), Expect = 1.3
Identities = 10/34 (29%), Positives = 25/34 (73%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKK 1614
E+K+++K +++++ K+ K K+++ + K +K KK
Sbjct: 2 ERKEEEKAQREEELKRLKNLKREEIEEKLEKIKK 35
Score = 30.7 bits (70), Expect = 1.3
Identities = 13/49 (26%), Positives = 31/49 (63%)
Query: 1598 KKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGGGGEKEL 1646
K++K+++K ++++ K+ K K+++ ++K +K KK G E++L
Sbjct: 1 KERKEEEKAQREEELKRLKNLKREEIEEKLEKIKKVAGLRGADLSEEDL 49
Score = 30.7 bits (70), Expect = 1.4
Identities = 10/35 (28%), Positives = 26/35 (74%)
Query: 1595 KKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKK 1629
K++K+++K +++ + K+ K K+++ ++K +K KK
Sbjct: 1 KERKEEEKAQREEELKRLKNLKREEIEEKLEKIKK 35
Score = 30.7 bits (70), Expect = 1.4
Identities = 10/35 (28%), Positives = 27/35 (77%)
Query: 1590 KKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKK 1624
K++K+++K +++++ K+ K K+++ ++K +K KK
Sbjct: 1 KERKEEEKAQREEELKRLKNLKREEIEEKLEKIKK 35
Score = 30.7 bits (70), Expect = 1.5
Identities = 10/35 (28%), Positives = 26/35 (74%)
Query: 1585 KKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKK 1619
K++K+++K +++++ K+ K K ++ ++K +K KK
Sbjct: 1 KERKEEEKAQREEELKRLKNLKREEIEEKLEKIKK 35
Score = 30.7 bits (70), Expect = 1.6
Identities = 10/35 (28%), Positives = 26/35 (74%)
Query: 1583 KKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKK 1617
K++K+++K +++++ K+ K K++ ++K +K KK
Sbjct: 1 KERKEEEKAQREEELKRLKNLKREEIEEKLEKIKK 35
Score = 30.3 bits (69), Expect = 2.0
Identities = 10/35 (28%), Positives = 26/35 (74%)
Query: 1596 KKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKK 1630
K++K+++K ++ ++ K+ K K+++ ++K +K KK
Sbjct: 1 KERKEEEKAQREEELKRLKNLKREEIEEKLEKIKK 35
Score = 30.3 bits (69), Expect = 2.2
Identities = 10/35 (28%), Positives = 26/35 (74%)
Query: 1591 KKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKK 1625
K++K+++K +++++ K K K+++ ++K +K KK
Sbjct: 1 KERKEEEKAQREEELKRLKNLKREEIEEKLEKIKK 35
Score = 30.3 bits (69), Expect = 2.4
Identities = 10/35 (28%), Positives = 27/35 (77%)
Query: 1588 KKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKK 1622
K++K+++K +++++ K+ K K+++ ++K +K KK
Sbjct: 1 KERKEEEKAQREEELKRLKNLKREEIEEKLEKIKK 35
Score = 29.9 bits (68), Expect = 3.0
Identities = 9/35 (25%), Positives = 26/35 (74%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKK 1615
+++K+++K +++++ K+ K K+++ +K +K KK
Sbjct: 1 KERKEEEKAQREEELKRLKNLKREEIEEKLEKIKK 35
Score = 29.9 bits (68), Expect = 3.2
Identities = 9/35 (25%), Positives = 26/35 (74%)
Query: 1592 KKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKK 1626
K++K+++K +++++ + K K+++ ++K +K KK
Sbjct: 1 KERKEEEKAQREEELKRLKNLKREEIEEKLEKIKK 35
Score = 29.5 bits (67), Expect = 3.3
Identities = 10/35 (28%), Positives = 26/35 (74%)
Query: 1597 KKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKK 1631
K++K+++K + +++ K+ K K+++ ++K +K KK
Sbjct: 1 KERKEEEKAQREEELKRLKNLKREEIEEKLEKIKK 35
>gnl|CDD|150231 pfam09486, HrpB7, Bacterial type III secretion protein (HrpB7).
This entry represents proteins encoded by genes which
are found in type III secretion operons in a narrow
range of species including Xanthomonas, Burkholderia and
Ralstonia.
Length = 158
Score = 34.8 bits (80), Expect = 0.14
Identities = 10/54 (18%), Positives = 22/54 (40%)
Query: 770 AVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKLERAEK 823
V +E + +A LQA L + + QI++ +++ +R +
Sbjct: 82 DVLVEGHRAAEQAVAAARQALQAKVAALGAVRRKIARNDAQIDVYRERADRLRR 135
>gnl|CDD|192292 pfam09429, Wbp11, WW domain binding protein 11. The WW domain is a
small protein module with a triple-stranded beta-sheet
fold. This is a family of WW domain binding proteins.
Length = 78
Score = 33.0 bits (76), Expect = 0.14
Identities = 19/65 (29%), Positives = 35/65 (53%), Gaps = 12/65 (18%)
Query: 1574 ARREGRGEKKKKKKKKKKKKKKKKKKKKKKK---------KKYKKKKKKKKKKKKKKKKK 1624
R+E +KKK+ KK K +++ +++ K KK K K +++ K + +K+K
Sbjct: 10 YRKE---QKKKELKKNKAERQARREAKLAKKNPDRLQRELDKLKAQEESGKLRPVEKQKL 66
Query: 1625 KKKKK 1629
KK +K
Sbjct: 67 KKLEK 71
>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional.
Length = 520
Score = 36.3 bits (85), Expect = 0.15
Identities = 12/64 (18%), Positives = 38/64 (59%), Gaps = 4/64 (6%)
Query: 1574 ARREGRGEKKKK----KKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKK 1629
A++E KK+ K++ K + + +K+ ++++ + +K +K+ +K++ +K + +
Sbjct: 47 AKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLELLE 106
Query: 1630 KKKK 1633
K+++
Sbjct: 107 KREE 110
Score = 34.8 bits (81), Expect = 0.47
Identities = 10/53 (18%), Positives = 38/53 (71%)
Query: 1573 LARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKK 1625
L ++E ++K + +K++++ +KK+K+ ++K++ +KK+++ ++ +++ ++
Sbjct: 91 LLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQE 143
Score = 34.4 bits (80), Expect = 0.57
Identities = 12/60 (20%), Positives = 41/60 (68%)
Query: 1573 LARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKK 1632
L + E R +K++ +K + +K++++ +KK+K ++K+++ +KK+++ ++ +++ ++
Sbjct: 84 LQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQE 143
Score = 34.4 bits (80), Expect = 0.64
Identities = 14/62 (22%), Positives = 42/62 (67%), Gaps = 3/62 (4%)
Query: 1575 RREGRGEKKKKKKKKKKKKKKKKKKK---KKKKKKYKKKKKKKKKKKKKKKKKKKKKKKK 1631
R E E ++++ + +K +K+ +K+ +K + +K++++ +KK+K+ ++K+++ +KK
Sbjct: 70 RNEFEKELRERRNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKK 129
Query: 1632 KK 1633
++
Sbjct: 130 EE 131
Score = 33.6 bits (78), Expect = 0.87
Identities = 16/74 (21%), Positives = 38/74 (51%), Gaps = 11/74 (14%)
Query: 1582 KKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKK------KKKKKKKYS 1635
KK + K K+ +++ K+ ++ KK+ + KK+ + K++ K + ++++ +
Sbjct: 26 KKIAEAKIKEAEEEAKRILEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQ 85
Query: 1636 REGGGGGEKELVQK 1649
+ EK L+QK
Sbjct: 86 KL-----EKRLLQK 94
Score = 32.8 bits (76), Expect = 1.5
Identities = 15/65 (23%), Positives = 43/65 (66%), Gaps = 3/65 (4%)
Query: 1576 REGRGEKKKKKKKKKKKK---KKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKK 1632
RE R E +K +K+ +K+ +K + +K++++ +KK+K+ ++K+++ +KK+++ ++
Sbjct: 78 RERRNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELI 137
Query: 1633 KYSRE 1637
+ +
Sbjct: 138 EEQLQ 142
Score = 32.4 bits (75), Expect = 2.0
Identities = 15/64 (23%), Positives = 33/64 (51%), Gaps = 8/64 (12%)
Query: 1587 KKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGGGGEKEL 1646
KK + K K+ +++ K+ + KK+ + KK+ + K++ K + ++ EKEL
Sbjct: 26 KKIAEAKIKEAEEEAKRILEEAKKEAEAIKKEALLEAKEEIHKLRNEF--------EKEL 77
Query: 1647 VQKN 1650
++
Sbjct: 78 RERR 81
Score = 32.1 bits (74), Expect = 2.9
Identities = 12/62 (19%), Positives = 35/62 (56%)
Query: 1572 LLARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKK 1631
A E + ++ KK+ + KK+ + K++ K + + +K+ ++++ + +K +K+ +
Sbjct: 34 KEAEEEAKRILEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLEKRLLQ 93
Query: 1632 KK 1633
K+
Sbjct: 94 KE 95
Score = 31.7 bits (73), Expect = 4.3
Identities = 12/57 (21%), Positives = 35/57 (61%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSRE 1637
E+ KK+ + KK+ + K++ K + + +K+ ++++ + +K +K+ +K++ R+
Sbjct: 45 EEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRK 101
>gnl|CDD|149515 pfam08492, SRP72, SRP72 RNA-binding domain. This region has been
identified as the binding site of the SRP72 protein to
SRP RNA.
Length = 57
Score = 32.4 bits (74), Expect = 0.15
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 1606 KYKKKKKKKKKKKKKKKKKKKKKKKKKKY 1634
K KK KKK ++KKKK KKK+K K
Sbjct: 3 KKPKKIAKKKPGTEQKKKKSAKKKRKPKL 31
Score = 32.0 bits (73), Expect = 0.21
Identities = 16/28 (57%), Positives = 19/28 (67%)
Query: 1595 KKKKKKKKKKKKYKKKKKKKKKKKKKKK 1622
KK KK KKK ++KKKK KKK+K K
Sbjct: 3 KKPKKIAKKKPGTEQKKKKSAKKKRKPK 30
Score = 31.7 bits (72), Expect = 0.26
Identities = 15/28 (53%), Positives = 18/28 (64%)
Query: 1582 KKKKKKKKKKKKKKKKKKKKKKKKKYKK 1609
KK KKK ++KKKK KKK+K K K
Sbjct: 6 KKIAKKKPGTEQKKKKSAKKKRKPKLPK 33
Score = 30.9 bits (70), Expect = 0.56
Identities = 16/28 (57%), Positives = 19/28 (67%)
Query: 1597 KKKKKKKKKKYKKKKKKKKKKKKKKKKK 1624
KK KK KKK ++KKKK KKK+K K
Sbjct: 3 KKPKKIAKKKPGTEQKKKKSAKKKRKPK 30
Score = 30.5 bits (69), Expect = 0.65
Identities = 16/28 (57%), Positives = 19/28 (67%)
Query: 1605 KKYKKKKKKKKKKKKKKKKKKKKKKKKK 1632
KK KK KKK ++KKKK KKK+K K
Sbjct: 3 KKPKKIAKKKPGTEQKKKKSAKKKRKPK 30
Score = 30.5 bits (69), Expect = 0.66
Identities = 16/28 (57%), Positives = 19/28 (67%)
Query: 1596 KKKKKKKKKKKYKKKKKKKKKKKKKKKK 1623
KK KK KKK ++KKKK KKK+K K
Sbjct: 3 KKPKKIAKKKPGTEQKKKKSAKKKRKPK 30
Score = 30.5 bits (69), Expect = 0.68
Identities = 16/28 (57%), Positives = 18/28 (64%)
Query: 1594 KKKKKKKKKKKKKYKKKKKKKKKKKKKK 1621
KK KK KKK +KKKK KKK+K K
Sbjct: 3 KKPKKIAKKKPGTEQKKKKSAKKKRKPK 30
Score = 30.1 bits (68), Expect = 0.85
Identities = 16/28 (57%), Positives = 19/28 (67%)
Query: 1601 KKKKKKYKKKKKKKKKKKKKKKKKKKKK 1628
KK KK KKK ++KKKK KKK+K K
Sbjct: 3 KKPKKIAKKKPGTEQKKKKSAKKKRKPK 30
Score = 30.1 bits (68), Expect = 1.1
Identities = 16/28 (57%), Positives = 18/28 (64%)
Query: 1593 KKKKKKKKKKKKKKYKKKKKKKKKKKKK 1620
KK KK KKK + KKKK KKK+K K
Sbjct: 3 KKPKKIAKKKPGTEQKKKKSAKKKRKPK 30
Score = 29.7 bits (67), Expect = 1.3
Identities = 17/33 (51%), Positives = 21/33 (63%)
Query: 1602 KKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKY 1634
KK KK KKK ++KKKK KKK+K K K +
Sbjct: 3 KKPKKIAKKKPGTEQKKKKSAKKKRKPKLPKNF 35
Score = 29.7 bits (67), Expect = 1.4
Identities = 16/28 (57%), Positives = 19/28 (67%)
Query: 1588 KKKKKKKKKKKKKKKKKKKYKKKKKKKK 1615
KK KK KKK ++KKKK KKK+K K
Sbjct: 3 KKPKKIAKKKPGTEQKKKKSAKKKRKPK 30
Score = 29.3 bits (66), Expect = 2.1
Identities = 16/28 (57%), Positives = 19/28 (67%)
Query: 1587 KKKKKKKKKKKKKKKKKKKKYKKKKKKK 1614
KK KK KKK ++KKKK KKK+K K
Sbjct: 3 KKPKKIAKKKPGTEQKKKKSAKKKRKPK 30
Score = 29.0 bits (65), Expect = 2.3
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 1582 KKKKKKKKKKKKKKKKKKKKKKKKKYKKKK 1611
KKK ++KKKK KKK+K K K +
Sbjct: 10 KKKPGTEQKKKKSAKKKRKPKLPKNFNPVV 39
Score = 29.0 bits (65), Expect = 2.8
Identities = 17/30 (56%), Positives = 19/30 (63%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKK 1610
E KK KK KKK ++KKKK KKK K K
Sbjct: 1 EAKKPKKIAKKKPGTEQKKKKSAKKKRKPK 30
Score = 28.6 bits (64), Expect = 4.0
Identities = 15/28 (53%), Positives = 18/28 (64%)
Query: 1598 KKKKKKKKKYKKKKKKKKKKKKKKKKKK 1625
KK KK KK ++KKKK KKK+K K
Sbjct: 3 KKPKKIAKKKPGTEQKKKKSAKKKRKPK 30
Score = 28.2 bits (63), Expect = 4.2
Identities = 15/28 (53%), Positives = 18/28 (64%)
Query: 1599 KKKKKKKKYKKKKKKKKKKKKKKKKKKK 1626
KK KK K K ++KKKK KKK+K K
Sbjct: 3 KKPKKIAKKKPGTEQKKKKSAKKKRKPK 30
Score = 28.2 bits (63), Expect = 4.8
Identities = 15/28 (53%), Positives = 18/28 (64%)
Query: 1600 KKKKKKKYKKKKKKKKKKKKKKKKKKKK 1627
KK KK KK ++KKKK KKK+K K
Sbjct: 3 KKPKKIAKKKPGTEQKKKKSAKKKRKPK 30
Score = 28.2 bits (63), Expect = 4.9
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 1580 GEKKKKKKKKKKKKKKKKKKKKKKKKKYKK 1609
KK KK KKK ++KKKK KKK+ K
Sbjct: 1 EAKKPKKIAKKKPGTEQKKKKSAKKKRKPK 30
Score = 27.8 bits (62), Expect = 6.2
Identities = 15/28 (53%), Positives = 18/28 (64%)
Query: 1590 KKKKKKKKKKKKKKKKKYKKKKKKKKKK 1617
KK KK KKK ++KK K KKK+K K
Sbjct: 3 KKPKKIAKKKPGTEQKKKKSAKKKRKPK 30
Score = 27.8 bits (62), Expect = 6.3
Identities = 15/28 (53%), Positives = 18/28 (64%)
Query: 1586 KKKKKKKKKKKKKKKKKKKKKYKKKKKK 1613
KK KK KKK ++KKKK KK+K K
Sbjct: 3 KKPKKIAKKKPGTEQKKKKSAKKKRKPK 30
Score = 27.8 bits (62), Expect = 6.7
Identities = 15/28 (53%), Positives = 18/28 (64%)
Query: 1591 KKKKKKKKKKKKKKKKYKKKKKKKKKKK 1618
KK KK KKK ++K KK KKK+K K
Sbjct: 3 KKPKKIAKKKPGTEQKKKKSAKKKRKPK 30
>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional.
Length = 880
Score = 36.6 bits (85), Expect = 0.15
Identities = 14/63 (22%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Query: 763 AEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKLERAE 822
E + ++E+L ++ L + +++ + +D E ED+IE +++ E E
Sbjct: 467 VETIEEDRERVEELEAELEDLEEEVEEVEERLERA----EDLVEAEDRIERLEERREDLE 522
Query: 823 KLI 825
+LI
Sbjct: 523 ELI 525
Score = 30.4 bits (69), Expect = 9.5
Identities = 24/100 (24%), Positives = 40/100 (40%), Gaps = 16/100 (16%)
Query: 760 AKLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRD-------------ELAQKSKDKKE 806
A+ E + ++ +LNSK A+L + L+ +R L +K + E
Sbjct: 561 AEAEEEAEEAREEVAELNSKLAELKERIESLERIRTLLAAIADAEDEIERLREKREALAE 620
Query: 807 LEDQI-ELCKQKLERAEKLIGGLGGEKTRWSEASANLSKA 845
L D+ E +K ER +L R EA + +A
Sbjct: 621 LNDERRERLAEKRERKRELEAEFDEA--RIEEAREDKERA 658
>gnl|CDD|221177 pfam11708, Slu7, Pre-mRNA splicing Prp18-interacting factor. The
spliceosome, an assembly of snRNAs (U1, U2, U4/U6, and
U5) and proteins, catalyzes the excision of introns from
pre-mRNAs in two successive trans-esterification
reactions. Step 2 depends upon integral spliceosome
constituents such as U5 snRNA and Prp8 and
non-spliceosomal proteins Prp16, Slu7, Prp18, and Prp22.
ATP hydrolysis by the DEAH-box enzyme Prp16 promotes a
conformational change in the spliceosome that leads to
protection of the 3'ss from targeted RNase H cleavage.
This change, which probably reflects binding of the 3'ss
PyAG in the catalytic centre of the spliceosome, requires
the ordered recruitment of Slu7, Prp18, and Prp22 to the
spliceosome. There is a close functional relationship
between Prp8, Prp18, and Slu7, and Prp18 interacts with
Slu7, so that together they recruit Prp22 to the
spliceosome. Most members of the family carry a
zinc-finger of the CCHC-type upstream of this domain.
Length = 236
Score = 35.5 bits (82), Expect = 0.16
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 10/62 (16%)
Query: 1583 KKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKK----------KKKKKKKKKKKKK 1632
+KK+K+KK++ K +KK+ +KY ++ K K+ + + KKKK K
Sbjct: 160 LLRKKEKEKKEQLKIQKKQSLLEKYGGEEHLDKPPKELLLGQSEDYVEYDRAGKKKKAKS 219
Query: 1633 KY 1634
KY
Sbjct: 220 KY 221
>gnl|CDD|203462 pfam06476, DUF1090, Protein of unknown function (DUF1090). This
family consists of several bacterial proteins of unknown
function and is known as YqjC in E. coli.
Length = 115
Score = 33.8 bits (78), Expect = 0.16
Identities = 11/55 (20%), Positives = 32/55 (58%), Gaps = 4/55 (7%)
Query: 1572 LLARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKK 1626
L A R+ K ++K+++ +++++ K+ + K K +KK++K + + + ++
Sbjct: 64 LRAERQ----AKVEEKEQEVAEREQELKEAQAKGDADKIEKKQRKLAEAQAELQE 114
Score = 32.6 bits (75), Expect = 0.43
Identities = 8/47 (17%), Positives = 30/47 (63%)
Query: 1586 KKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKK 1632
+ +++ K ++K+++ +++++ K+ + K K +KK++K + + +
Sbjct: 65 RAERQAKVEEKEQEVAEREQELKEAQAKGDADKIEKKQRKLAEAQAE 111
Score = 31.8 bits (73), Expect = 0.78
Identities = 8/50 (16%), Positives = 32/50 (64%)
Query: 1583 KKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKK 1632
+ +++ K ++K+++ +++++ K+ + K K +KK++K + + + ++
Sbjct: 65 RAERQAKVEEKEQEVAEREQELKEAQAKGDADKIEKKQRKLAEAQAELQE 114
Score = 31.1 bits (71), Expect = 1.4
Identities = 8/47 (17%), Positives = 29/47 (61%)
Query: 1587 KKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
+ +++ K ++K+++ ++++ K+ + K K +KK++K + + +
Sbjct: 65 RAERQAKVEEKEQEVAEREQELKEAQAKGDADKIEKKQRKLAEAQAE 111
Score = 29.9 bits (68), Expect = 3.4
Identities = 8/50 (16%), Positives = 31/50 (62%)
Query: 1582 KKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKK 1631
+ +++ K ++K+++ +++++ K+ K K +KK++K + + + ++
Sbjct: 65 RAERQAKVEEKEQEVAEREQELKEAQAKGDADKIEKKQRKLAEAQAELQE 114
Score = 29.9 bits (68), Expect = 3.7
Identities = 7/49 (14%), Positives = 30/49 (61%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKK 1629
+++ K ++K+++ +++++ K+ + K +KK++K + + + ++
Sbjct: 66 AERQAKVEEKEQEVAEREQELKEAQAKGDADKIEKKQRKLAEAQAELQE 114
>gnl|CDD|225620 COG3078, COG3078, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 169
Score = 34.8 bits (80), Expect = 0.17
Identities = 17/60 (28%), Positives = 33/60 (55%)
Query: 1591 KKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGGGGEKELVQKN 1650
K+ KK ++ + K KK ++K +++ + + +K++KK+K SR GG Q+N
Sbjct: 2 KRSKKTRRPRSKADKKARRKTREELDAEARDRKRQKKRKGLASGSRHSGGNENSGNKQQN 61
Score = 32.5 bits (74), Expect = 1.1
Identities = 11/39 (28%), Positives = 25/39 (64%)
Query: 1585 KKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKK 1623
K+ KK ++ + K KK ++K + + + + +K++KK+K
Sbjct: 2 KRSKKTRRPRSKADKKARRKTREELDAEARDRKRQKKRK 40
Score = 30.6 bits (69), Expect = 4.8
Identities = 11/39 (28%), Positives = 26/39 (66%)
Query: 1583 KKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKK 1621
K+ KK ++ + K KK ++K +++ + + +K++KK+K
Sbjct: 2 KRSKKTRRPRSKADKKARRKTREELDAEARDRKRQKKRK 40
>gnl|CDD|234465 TIGR04092, LTA_DltD, D-alanyl-lipoteichoic acid biosynthesis protein
DltD. Members of this protein family are DltD, part of
the DltABCD system widely distributed in the Firmicutes
for D-alanylation of lipoteichoic acids. The most common
form of LTA, as in Staphylococcus aureus, has a backbone
of polyglycerolphosphate.
Length = 383
Score = 36.0 bits (84), Expect = 0.17
Identities = 35/134 (26%), Positives = 52/134 (38%), Gaps = 17/134 (12%)
Query: 1518 KKSLQEVRQAVKGLIVMSKELEEINTSIMFGKIPQAWASKSYPSLKPLGSYIVDLLARRE 1577
K S + R A K L+ +S + + K+ S L Y +LL + +
Sbjct: 152 KISTETKRYAAKRLLELSVVKSDKILENLLKKLYANGKKLSKFDKVYLEPYYRNLLEKED 211
Query: 1578 ----GRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKK-------------KKKKKK 1620
K KKK KK KK + ++ KK +K+ KK+ K+ KK
Sbjct: 212 DLFSRFKLKYKKKIKKAAKKLPETYDWEELDKKAEKEGKKRTTNNPFGIDNKYYNKRIKK 271
Query: 1621 KKKKKKKKKKKKKY 1634
K KK K +K Y
Sbjct: 272 KLKKLKGSQKNFDY 285
Score = 33.3 bits (77), Expect = 1.0
Identities = 17/56 (30%), Positives = 23/56 (41%), Gaps = 3/56 (5%)
Query: 1583 KKKKKKKKKKKKKKKKKKKKKKKKYKKKKK---KKKKKKKKKKKKKKKKKKKKKYS 1635
KK KK K K + + +K+ + K K KKK KK KK + Y
Sbjct: 182 KKLYANGKKLSKFDKVYLEPYYRNLLEKEDDLFSRFKLKYKKKIKKAAKKLPETYD 237
>gnl|CDD|218337 pfam04939, RRS1, Ribosome biogenesis regulatory protein (RRS1). This
family consists of several eukaryotic ribosome biogenesis
regulatory (RRS1) proteins. RRS1 is a nuclear protein
that is essential for the maturation of 25 S rRNA and the
60 S ribosomal subunit assembly in Saccharomyces
cerevisiae.
Length = 164
Score = 34.6 bits (80), Expect = 0.17
Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 21/75 (28%)
Query: 1579 RGEKKKKKKKK---------------KKKKKKKKK------KKKKKKKKYKKKKKKKKKK 1617
+G KK+KK K K+ K +K K K+ KK+++KK
Sbjct: 90 KGIKKRKKSKLVYDEATGEWVPRWGYKRANKDLEKDWIIEVKPNDDPKEDPFAKKRREKK 149
Query: 1618 KKKKKKKKKKKKKKK 1632
++ K +K++ K KK
Sbjct: 150 ERVAKNEKRELKNKK 164
Score = 34.2 bits (79), Expect = 0.26
Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 25/77 (32%)
Query: 1582 KKKKKKKKKKKKK---------------KKKKKKKKK------KKKYKKKK----KKKKK 1616
KKK KK+KK K K+ K +K K K+ KK+++
Sbjct: 88 KKKGIKKRKKSKLVYDEATGEWVPRWGYKRANKDLEKDWIIEVKPNDDPKEDPFAKKRRE 147
Query: 1617 KKKKKKKKKKKKKKKKK 1633
KK++ K +K++ K KK
Sbjct: 148 KKERVAKNEKRELKNKK 164
Score = 33.4 bits (77), Expect = 0.41
Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 22/78 (28%)
Query: 1581 EKKKKKKKKKKKKKKKK-----KKKKKKKKKYKKKKKKKKK-----------------KK 1618
EK KKK KK+KK K + + YK+ K +K K
Sbjct: 84 EKFAKKKGIKKRKKSKLVYDEATGEWVPRWGYKRANKDLEKDWIIEVKPNDDPKEDPFAK 143
Query: 1619 KKKKKKKKKKKKKKKYSR 1636
K+++KK++ K +K+ +
Sbjct: 144 KRREKKERVAKNEKRELK 161
>gnl|CDD|225651 COG3109, ProQ, Activator of osmoprotectant transporter ProP [Signal
transduction mechanisms].
Length = 208
Score = 35.2 bits (81), Expect = 0.18
Identities = 8/49 (16%), Positives = 25/49 (51%)
Query: 1573 LARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKK 1621
LA + R + ++ +++ KK+++ +K ++ + K K +++
Sbjct: 103 LAEAKARVQAQRAEQQAKKREEAPAAGEKPTAERPATAARPKPKAPREE 151
Score = 32.5 bits (74), Expect = 1.1
Identities = 8/53 (15%), Positives = 27/53 (50%)
Query: 1574 ARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKK 1626
AR++ K + + ++ +++ KK+++ +K ++ + K K +++
Sbjct: 99 ARKQLAEAKARVQAQRAEQQAKKREEAPAAGEKPTAERPATAARPKPKAPREE 151
Score = 31.7 bits (72), Expect = 2.5
Identities = 6/48 (12%), Positives = 23/48 (47%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKK 1628
+ K + + ++ +++ KK+++ K ++ + K K +++
Sbjct: 104 AEAKARVQAQRAEQQAKKREEAPAAGEKPTAERPATAARPKPKAPREE 151
Score = 30.6 bits (69), Expect = 4.8
Identities = 7/52 (13%), Positives = 26/52 (50%)
Query: 1579 RGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKK 1630
R + + K + + ++ +++ KK+++ +K ++ + K K +++
Sbjct: 100 RKQLAEAKARVQAQRAEQQAKKREEAPAAGEKPTAERPATAARPKPKAPREE 151
Score = 30.6 bits (69), Expect = 5.5
Identities = 6/47 (12%), Positives = 24/47 (51%)
Query: 1585 KKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKK 1631
+ K + + ++ +++ KK+++ +K ++ + K K +++
Sbjct: 105 EAKARVQAQRAEQQAKKREEAPAAGEKPTAERPATAARPKPKAPREE 151
>gnl|CDD|227891 COG5604, COG5604, Uncharacterized conserved protein [Function
unknown].
Length = 523
Score = 36.0 bits (83), Expect = 0.19
Identities = 14/55 (25%), Positives = 23/55 (41%)
Query: 1583 KKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSRE 1637
KK K K ++K+ + KK Y K + + K + K K+K S+
Sbjct: 9 KKFTKNHLKNTIDRRKQLARSKKVYGTKNRNSHTENKMESGTNDNNKNKEKLSKL 63
Score = 33.7 bits (77), Expect = 0.91
Identities = 17/67 (25%), Positives = 26/67 (38%), Gaps = 3/67 (4%)
Query: 1582 KKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKK---KKKKKKKKKKKKYSREG 1638
KK K K ++K+ + KK K + + K + K K+K K YS
Sbjct: 9 KKFTKNHLKNTIDRRKQLARSKKVYGTKNRNSHTENKMESGTNDNNKNKEKLSKLYSDVD 68
Query: 1639 GGGGEKE 1645
E+E
Sbjct: 69 SSSSEEE 75
>gnl|CDD|241262 cd01228, PH_BCR-related, Breakpoint Cluster Region-related pleckstrin
homology (PH) domain. The BCR gene is one of the two
genes in the BCR-ABL complex, which is associated with
the Philadelphia chromosome, a product of a reciprocal
translocation between chromosomes 22 and 9. BCR is a
GTPase-activating protein (GAP) for RAC1 (primarily) and
CDC42. The Dbl region of BCR has the most RhoGEF activity
for Cdc42, and less activity towards Rac and Rho. Since
BCR possesses both GAP and GEF activities, it may
function to temporally regulate the activity of these
GTPases. It also displays serine/threonine kinase
activity. The BCR protein contains multiple domains
including an N-terminal kinase domain, a RhoGEF domain, a
PH domain, a C1 domain, a C2 domain, and a C-terminal
RhoGAP domain. ABR, a related smaller protein, is
structurally similar to BCR, but lacks the N-terminal
kinase domain and has GAP activity for both Rac and
Cdc42. PH domains have diverse functions, but in general
are involved in targeting proteins to the appropriate
cellular location or in the interaction with a binding
partner. They share little sequence conservation, but all
have a common fold, which is electrostatically polarized.
Less than 10% of PH domains bind phosphoinositide
phosphates (PIPs) with high affinity and specificity. PH
domains are distinguished from other PIP-binding domains
by their specific high-affinity binding to PIPs with two
vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or
PtdIns(3,4,5)P3 which results in targeting some PH domain
proteins to the plasma membrane. A few display strong
specificity in lipid binding. Any specificity is usually
determined by loop regions or insertions in the
N-terminus of the domain, which are not conserved across
all PH domains. PH domains are found in cellular
signaling proteins such as serine/threonine kinase,
tyrosine kinases, regulators of G-proteins, endocytotic
GTPases, adaptors, as well as cytoskeletal associated
molecules and in lipid associated enzymes.
Length = 179
Score = 34.6 bits (80), Expect = 0.20
Identities = 9/41 (21%), Positives = 19/41 (46%)
Query: 1590 KKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKK 1630
++ + KK K+K + ++KK + +K +KK
Sbjct: 89 EELVQMKKAISALKQKIKRDSAERKKAASSGSRAIEKLRKK 129
Score = 34.6 bits (80), Expect = 0.20
Identities = 10/41 (24%), Positives = 20/41 (48%)
Query: 1591 KKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKK 1631
++ + KK K+K K+ ++KK + +K +KK
Sbjct: 89 EELVQMKKAISALKQKIKRDSAERKKAASSGSRAIEKLRKK 129
Score = 34.2 bits (79), Expect = 0.28
Identities = 10/41 (24%), Positives = 19/41 (46%)
Query: 1589 KKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKK 1629
++ + KK K+K K ++KK + +K +KK
Sbjct: 89 EELVQMKKAISALKQKIKRDSAERKKAASSGSRAIEKLRKK 129
Score = 33.9 bits (78), Expect = 0.39
Identities = 11/41 (26%), Positives = 20/41 (48%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKK 1621
E+ + KK K+K K+ ++KK + +K +KK
Sbjct: 89 EELVQMKKAISALKQKIKRDSAERKKAASSGSRAIEKLRKK 129
Score = 33.5 bits (77), Expect = 0.47
Identities = 10/41 (24%), Positives = 20/41 (48%)
Query: 1587 KKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKK 1627
++ + KK K+K K+ ++KK + +K +KK
Sbjct: 89 EELVQMKKAISALKQKIKRDSAERKKAASSGSRAIEKLRKK 129
Score = 33.5 bits (77), Expect = 0.48
Identities = 10/41 (24%), Positives = 20/41 (48%)
Query: 1588 KKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKK 1628
++ + KK K+K K+ ++KK + +K +KK
Sbjct: 89 EELVQMKKAISALKQKIKRDSAERKKAASSGSRAIEKLRKK 129
Score = 33.1 bits (76), Expect = 0.59
Identities = 10/41 (24%), Positives = 20/41 (48%)
Query: 1586 KKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKK 1626
++ + KK K+K K+ ++KK + +K +KK
Sbjct: 89 EELVQMKKAISALKQKIKRDSAERKKAASSGSRAIEKLRKK 129
Score = 33.1 bits (76), Expect = 0.70
Identities = 10/41 (24%), Positives = 19/41 (46%)
Query: 1593 KKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
++ + KK K K K+ ++KK + +K +KK
Sbjct: 89 EELVQMKKAISALKQKIKRDSAERKKAASSGSRAIEKLRKK 129
Score = 33.1 bits (76), Expect = 0.72
Identities = 10/41 (24%), Positives = 19/41 (46%)
Query: 1584 KKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKK 1624
++ + KK K+K K+ + KK + +K +KK
Sbjct: 89 EELVQMKKAISALKQKIKRDSAERKKAASSGSRAIEKLRKK 129
Score = 32.7 bits (75), Expect = 0.88
Identities = 10/41 (24%), Positives = 19/41 (46%)
Query: 1585 KKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKK 1625
++ + KK K+K K+ +KK + +K +KK
Sbjct: 89 EELVQMKKAISALKQKIKRDSAERKKAASSGSRAIEKLRKK 129
Score = 32.3 bits (74), Expect = 1.2
Identities = 9/41 (21%), Positives = 19/41 (46%)
Query: 1592 KKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKK 1632
++ + KK K+ K+ ++KK + +K +KK
Sbjct: 89 EELVQMKKAISALKQKIKRDSAERKKAASSGSRAIEKLRKK 129
>gnl|CDD|146486 pfam03879, Cgr1, Cgr1 family. Members of this family are coiled-coil
proteins that are involved in pre-rRNA processing.
Length = 105
Score = 33.5 bits (77), Expect = 0.20
Identities = 13/53 (24%), Positives = 36/53 (67%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
++K+ +++++ + K+++ K++K++Y+K K KK ++ K+++K+ K K
Sbjct: 52 DEKEAERQRRIQAIKERRAAKEEKERYEKMAAKMHAKKVERLKRREKRNKLLK 104
Score = 33.1 bits (76), Expect = 0.22
Identities = 17/69 (24%), Positives = 42/69 (60%), Gaps = 5/69 (7%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGG 1640
EKK + K K +K+ +K+ +++ K ++K+ K +K+ +++++ + K+++ ++E
Sbjct: 17 EKKAFRPKSKLTSWEKRMEKRLEQQAIKAREKELKDEKEAERQRRIQAIKERRAAKE--- 73
Query: 1641 GGEKELVQK 1649
EKE +K
Sbjct: 74 --EKERYEK 80
Score = 33.1 bits (76), Expect = 0.25
Identities = 11/54 (20%), Positives = 35/54 (64%)
Query: 1579 RGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKK 1632
R + K +K+ +K+ +++ K ++K+ K +K+ +++++ + K+++ K++K
Sbjct: 22 RPKSKLTSWEKRMEKRLEQQAIKAREKELKDEKEAERQRRIQAIKERRAAKEEK 75
Score = 30.8 bits (70), Expect = 1.6
Identities = 14/57 (24%), Positives = 36/57 (63%)
Query: 1576 REGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKK 1632
+E + EK+ +++++ + K+++ K++K++ K K KK ++ K+++K+ K K
Sbjct: 48 KELKDEKEAERQRRIQAIKERRAAKEEKERYEKMAAKMHAKKVERLKRREKRNKLLK 104
Score = 29.7 bits (67), Expect = 3.7
Identities = 16/70 (22%), Positives = 40/70 (57%), Gaps = 11/70 (15%)
Query: 1575 RREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKK-----------KKKKKK 1623
R E R E++ K ++K+ K +K+ +++++ + K+++ K++K KK ++
Sbjct: 33 RMEKRLEQQAIKAREKELKDEKEAERQRRIQAIKERRAAKEEKERYEKMAAKMHAKKVER 92
Query: 1624 KKKKKKKKKK 1633
K+++K+ K
Sbjct: 93 LKRREKRNKL 102
Score = 29.3 bits (66), Expect = 5.2
Identities = 13/54 (24%), Positives = 33/54 (61%)
Query: 1575 RREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKK 1628
+ E E++++ + K+++ K++K++ +K K KK ++ K+++K+ K K
Sbjct: 51 KDEKEAERQRRIQAIKERRAAKEEKERYEKMAAKMHAKKVERLKRREKRNKLLK 104
Score = 28.9 bits (65), Expect = 7.6
Identities = 12/47 (25%), Positives = 27/47 (57%)
Query: 1585 KKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKK 1631
+ K K +KK + K K ++K+ +K+ +++ K ++K+ K +K
Sbjct: 8 RVNGKNWKTEKKAFRPKSKLTSWEKRMEKRLEQQAIKAREKELKDEK 54
>gnl|CDD|220600 pfam10147, CR6_interact, Growth arrest and DNA-damage-inducible
proteins-interacting protein 1. Members of this family
of proteins act as negative regulators of G1 to S cell
cycle phase progression by inhibiting cyclin-dependent
kinases. Inhibitory effects are additive with GADD45
proteins but occur also in the absence of GADD45
proteins. Furthermore, they act as a repressor of the
orphan nuclear receptor NR4A1 by inhibiting AB
domain-mediated transcriptional activity.
Length = 217
Score = 35.2 bits (81), Expect = 0.20
Identities = 10/52 (19%), Positives = 32/52 (61%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKK 1632
E ++++K+K+ +++ ++ + K K + + +K+K+++K + K++K
Sbjct: 107 ENREQQKEKEARRQAREAEIAKNMAKMPQMIADWRAQKRKREQKARAAKERK 158
Score = 33.2 bits (76), Expect = 0.68
Identities = 10/51 (19%), Positives = 32/51 (62%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKK 1631
E++K+K+ +++ ++ + K K + + +K+K+++K + K++K++
Sbjct: 110 EQQKEKEARRQAREAEIAKNMAKMPQMIADWRAQKRKREQKARAAKERKER 160
Score = 33.2 bits (76), Expect = 0.78
Identities = 11/52 (21%), Positives = 32/52 (61%)
Query: 1576 REGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKK 1627
RE + EK+ +++ ++ + K K + ++ +K+K+++K + K++K++
Sbjct: 109 REQQKEKEARRQAREAEIAKNMAKMPQMIADWRAQKRKREQKARAAKERKER 160
Score = 33.2 bits (76), Expect = 0.83
Identities = 18/88 (20%), Positives = 39/88 (44%), Gaps = 28/88 (31%)
Query: 1576 REGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKK----------------------- 1612
RE K K + + +K+K+++K + K++K
Sbjct: 122 REAEIAKNMAKMPQMIADWRAQKRKREQKARAAKERKERLVAEAREHFGYWVDPRDPRFQ 181
Query: 1613 -----KKKKKKKKKKKKKKKKKKKKKYS 1635
K+K++KKK K+ K+++K++K+ +
Sbjct: 182 EMLQQKEKEEKKKVKEAKRREKEEKRMA 209
Score = 33.2 bits (76), Expect = 0.88
Identities = 10/56 (17%), Positives = 34/56 (60%)
Query: 1582 KKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSRE 1637
++++K+K+ +++ ++ + K K + + +K+K+++K + K++K++ E
Sbjct: 109 REQQKEKEARRQAREAEIAKNMAKMPQMIADWRAQKRKREQKARAAKERKERLVAE 164
Score = 30.2 bits (68), Expect = 7.8
Identities = 14/79 (17%), Positives = 37/79 (46%), Gaps = 24/79 (30%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKK------------------------KKKYKKKKKKKKK 1616
+ +K+K+++K + K++K++ ++K K++KKK K+
Sbjct: 138 ADWRAQKRKREQKARAAKERKERLVAEAREHFGYWVDPRDPRFQEMLQQKEKEEKKKVKE 197
Query: 1617 KKKKKKKKKKKKKKKKKYS 1635
K+++K++K+ +
Sbjct: 198 AKRREKEEKRMAALVAAAA 216
>gnl|CDD|150786 pfam10153, DUF2361, Uncharacterized conserved protein (DUF2361).
This is a region of 120 amino acids that is conserved in
a family of proteins found from plants to fungi. The
function is not known.
Length = 114
Score = 33.4 bits (77), Expect = 0.21
Identities = 17/59 (28%), Positives = 33/59 (55%), Gaps = 6/59 (10%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKK------KKKKKKKKKKKKKKKKKKKKKKKK 1633
E+ + KK+ + +++KK+KK KKY KK ++ K+ +KK ++ +K+ K
Sbjct: 27 ERALEALKKELEDAERRKKRKKMAKKYHMVRFFERKKATRRLKQLEKKLEETSDEKEIK 85
Score = 33.4 bits (77), Expect = 0.21
Identities = 16/60 (26%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 1575 RREGRGEKKKKKKKKKKKKKKKKK--KKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKK 1632
++E +++KK+KK KK + ++KK ++ K+ +KK ++ +K+ K K++ K
Sbjct: 34 KKELEDAERRKKRKKMAKKYHMVRFFERKKATRRLKQLEKKLEETSDEKEIKDLKEQLSK 93
>gnl|CDD|193409 pfam12936, Kri1_C, KRI1-like family C-terminal. The yeast member of
this family (Kri1p) is found to be required for 40S
ribosome biogenesis in the nucleolus. This is the
C-terminal domain of the family.
Length = 93
Score = 32.9 bits (76), Expect = 0.21
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 1602 KKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKY 1634
KK Y+ K++++K KKK KK + ++ KKK +
Sbjct: 61 KKLAPYRDKEERRKDKKKYGKKARLREWKKKVF 93
Score = 30.6 bits (70), Expect = 1.2
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 1597 KKKKKKKKKKYKKKKKKKKKKKKKK 1621
K++++K KKKY KK + ++ KKK
Sbjct: 69 KEERRKDKKKYGKKARLREWKKKVF 93
Score = 30.2 bits (69), Expect = 1.6
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 10/48 (20%)
Query: 1558 SYPSLKPLGSYIVDLLARREGRGEKKKKKKKKKKKKKKKKKKKKKKKK 1605
Y SLK L Y R +++++K KKK KK + ++ KKK
Sbjct: 56 QYVSLKKLAPY----------RDKEERRKDKKKYGKKARLREWKKKVF 93
Score = 28.7 bits (65), Expect = 6.2
Identities = 10/26 (38%), Positives = 18/26 (69%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKK 1606
+K++++K KKK KK + ++ KKK
Sbjct: 68 DKEERRKDKKKYGKKARLREWKKKVF 93
>gnl|CDD|177779 PLN00185, PLN00185, 60S ribosomal protein L4-1; Provisional.
Length = 405
Score = 35.5 bits (82), Expect = 0.21
Identities = 13/48 (27%), Positives = 19/48 (39%)
Query: 1574 ARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKK 1621
R E + K KK+K KK+K+ K++ K K K
Sbjct: 341 RRMALLAEAARVKAKKEKLAKKRKQVSKEEAAAIKAAGKAWYKTMISD 388
Score = 32.1 bits (73), Expect = 2.4
Identities = 14/49 (28%), Positives = 21/49 (42%)
Query: 1574 ARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKK 1622
ARR + + K KK+K KK+K+ K++ K K K
Sbjct: 340 ARRMALLAEAARVKAKKEKLAKKRKQVSKEEAAAIKAAGKAWYKTMISD 388
Score = 31.7 bits (72), Expect = 4.0
Identities = 13/51 (25%), Positives = 22/51 (43%)
Query: 1586 KKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSR 1636
K ++ + + K KK+K KK+K+ K++ K K K S
Sbjct: 338 KTARRMALLAEAARVKAKKEKLAKKRKQVSKEEAAAIKAAGKAWYKTMISD 388
Score = 30.9 bits (70), Expect = 6.5
Identities = 11/44 (25%), Positives = 18/44 (40%)
Query: 1592 KKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYS 1635
+ K KK+K KK+ + K++ K K K Y+
Sbjct: 349 AARVKAKKEKLAKKRKQVSKEEAAAIKAAGKAWYKTMISDSDYT 392
Score = 30.9 bits (70), Expect = 6.6
Identities = 18/68 (26%), Positives = 25/68 (36%), Gaps = 11/68 (16%)
Query: 1582 KKKKKKKKKKKKKKKKKKKKKKKKKYKK-----------KKKKKKKKKKKKKKKKKKKKK 1630
KK K+ KK K K Y K + K KK+K KK+K+ K++
Sbjct: 311 KKDVKRAPLKKNPLKNLNAMLKLNPYAKTARRMALLAEAARVKAKKEKLAKKRKQVSKEE 370
Query: 1631 KKKYSREG 1638
G
Sbjct: 371 AAAIKAAG 378
>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor
protein; Reviewed.
Length = 782
Score = 36.0 bits (84), Expect = 0.22
Identities = 10/52 (19%), Positives = 35/52 (67%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKK 1632
E +++ ++K ++ + K+ +K K++ ++KK+K ++++ K ++ +K+ ++
Sbjct: 527 ELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQA 578
Score = 35.6 bits (83), Expect = 0.30
Identities = 39/165 (23%), Positives = 66/165 (40%), Gaps = 43/165 (26%)
Query: 1503 LKQELI-RYNRLTVIIKKSLQEVRQAVKGLIVMSK-ELEEINTSIMFGKIPQAWASKSYP 1560
LK+EL + +L K L+E + + I +K E +EI + + + K++
Sbjct: 549 LKEELEEKKEKLQEEEDKLLEEAEKEAQQAIKEAKKEADEIIKELRQLQKGGYASVKAH- 607
Query: 1561 SLKPLGSYIVDLLARREGRGEKKKKKKKKKKKKKKKKKKKK------------------K 1602
+L+ R+ + +KK+KKKKK+K+K+++ K
Sbjct: 608 ----------ELIEARKRLNKANEKKEKKKKKQKEKQEELKVGDEVKYLSLGQKGEVLSI 657
Query: 1603 KKKKY------------KKKKKKKKKKKKKKKKKKKKKKKKKKYS 1635
K +K +K KKKKKKK K K K +
Sbjct: 658 PDDKEAIVQAGIMKMKVPLSDLEKIQKPKKKKKKKPKTVKPKPRT 702
Score = 33.6 bits (78), Expect = 1.1
Identities = 15/50 (30%), Positives = 30/50 (60%)
Query: 1589 KKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREG 1638
K+ ++ +K K + + +K+ K +KK+KKKKK+K+K++ + G
Sbjct: 591 KELRQLQKGGYASVKAHELIEARKRLNKANEKKEKKKKKQKEKQEELKVG 640
Score = 33.3 bits (77), Expect = 1.5
Identities = 12/51 (23%), Positives = 34/51 (66%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKK 1631
+K ++ + K+ +K K++ ++KK+K ++++ K ++ +K+ ++ K+ KK
Sbjct: 534 QKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQAIKEAKK 584
>gnl|CDD|241486 cd13332, FERM_C_JAK1, Janus kinase 1 FERM domain C-lobe. JAK1 is a
tyrosine kinase protein essential in signaling type I and
type II cytokines. It interacts with the gamma chain of
type I cytokine receptors to elicit signals from the IL-2
receptor family, the IL-4 receptor family, the gp130
receptor family, ciliary neurotrophic factor receptor
(CNTF-R), neurotrophin-1 receptor (NNT-1R) and Leptin-R).
It also is involved in transducing a signal by type I
(IFN-alpha/beta) and type II (IFN-gamma) interferons, and
members of the IL-10 family via type II cytokine
receptors. JAK (also called Just Another Kinase) is a
family of intracellular, non-receptor tyrosine kinases
that transduce cytokine-mediated signals via the JAK-STAT
pathway. The JAK family in mammals consists of 4 members:
JAK1, JAK2, JAK3 and TYK2. JAKs are composed of seven JAK
homology (JH) domains (JH1-JH7) . The C-terminal JH1
domain is the main catalytic domain, followed by JH2,
which is often referred to as a pseudokinase domain,
followed by JH3-JH4 which is homologous to the SH2
domain, and lastly JH5-JH7 which is a FERM domain. Named
after Janus, the two-faced Roman god of doorways, JAKs
possess two near-identical phosphate-transferring
domains; one which displays the kinase activity (JH1),
while the other negatively regulates the kinase activity
of the first (JH2). The FERM domain has a cloverleaf
tripart structure (FERM_N, FERM_M, FERM_C/N, alpha-, and
C-lobe/A-lobe,A-lobe, B-lobe, C-lobe/F1, F2, F3). The
C-lobe/F3 within the FERM domain is part of the PH domain
family. The FERM domain is found in the
cytoskeletal-associated proteins such as ezrin, moesin,
radixin, 4.1R, and merlin. These proteins provide a link
between the membrane and cytoskeleton and are involved in
signal transduction pathways. The FERM domain is also
found in protein tyrosine phosphatases (PTPs) , the
tyrosine kinases FAK and JAK, in addition to other
proteins involved in signaling. This domain is
structurally similar to the PH and PTB domains and
consequently is capable of binding to both peptides and
phospholipids at different sites.
Length = 198
Score = 34.4 bits (79), Expect = 0.25
Identities = 15/25 (60%), Positives = 17/25 (68%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKK 1605
EKKKK K KK K K KK + KKK +
Sbjct: 90 EKKKKGKSKKNKLKGKKDEDKKKAR 114
Score = 33.3 bits (76), Expect = 0.59
Identities = 16/26 (61%), Positives = 18/26 (69%)
Query: 1613 KKKKKKKKKKKKKKKKKKKKKYSREG 1638
KKKK K KK K K KK + KK +REG
Sbjct: 91 KKKKGKSKKNKLKGKKDEDKKKAREG 116
Score = 32.9 bits (75), Expect = 0.81
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 1584 KKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKK 1617
++K +KKKK K KK K K KK + KKK +
Sbjct: 81 RRKPATTAVEKKKKGKSKKNKLKGKKDEDKKKAR 114
Score = 32.9 bits (75), Expect = 0.83
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 1599 KKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKK 1632
++K +KKKK K KK K K KK + KKK +
Sbjct: 81 RRKPATTAVEKKKKGKSKKNKLKGKKDEDKKKAR 114
Score = 32.9 bits (75), Expect = 0.89
Identities = 14/24 (58%), Positives = 16/24 (66%)
Query: 1583 KKKKKKKKKKKKKKKKKKKKKKKK 1606
KKKK K KK K K KK + KKK +
Sbjct: 91 KKKKGKSKKNKLKGKKDEDKKKAR 114
Score = 32.9 bits (75), Expect = 0.89
Identities = 14/24 (58%), Positives = 16/24 (66%)
Query: 1610 KKKKKKKKKKKKKKKKKKKKKKKK 1633
KKKK K KK K K KK + KKK +
Sbjct: 91 KKKKGKSKKNKLKGKKDEDKKKAR 114
Score = 32.9 bits (75), Expect = 0.99
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 1586 KKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKK 1619
++K +KKKK K KK K K KK + KKK +
Sbjct: 81 RRKPATTAVEKKKKGKSKKNKLKGKKDEDKKKAR 114
Score = 32.1 bits (73), Expect = 1.7
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 1591 KKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKK 1624
++K +KKKK K KK K K KK + KKK +
Sbjct: 81 RRKPATTAVEKKKKGKSKKNKLKGKKDEDKKKAR 114
Score = 31.3 bits (71), Expect = 2.7
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 1593 KKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKK 1626
++K +KKKK K KK K K KK + KKK +
Sbjct: 81 RRKPATTAVEKKKKGKSKKNKLKGKKDEDKKKAR 114
Score = 31.3 bits (71), Expect = 3.2
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 1588 KKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKK 1621
++K +KKKK K KK K K KK + KKK +
Sbjct: 81 RRKPATTAVEKKKKGKSKKNKLKGKKDEDKKKAR 114
Score = 30.6 bits (69), Expect = 4.9
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 1590 KKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKK 1623
++K +KKKK K K K K KK + KKK +
Sbjct: 81 RRKPATTAVEKKKKGKSKKNKLKGKKDEDKKKAR 114
Score = 30.6 bits (69), Expect = 5.5
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 1595 KKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKK 1628
++K +KK K K KK K K KK + KKK +
Sbjct: 81 RRKPATTAVEKKKKGKSKKNKLKGKKDEDKKKAR 114
Score = 30.6 bits (69), Expect = 5.6
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 1592 KKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKK 1625
++K +KKKK KK K K KK + KKK +
Sbjct: 81 RRKPATTAVEKKKKGKSKKNKLKGKKDEDKKKAR 114
Score = 30.6 bits (69), Expect = 5.7
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 1589 KKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKK 1622
++K +KKKK K K K K KK + KKK +
Sbjct: 81 RRKPATTAVEKKKKGKSKKNKLKGKKDEDKKKAR 114
Score = 30.2 bits (68), Expect = 6.0
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 1587 KKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKK 1620
++K +KKKK K KK K KK + KKK +
Sbjct: 81 RRKPATTAVEKKKKGKSKKNKLKGKKDEDKKKAR 114
Score = 30.2 bits (68), Expect = 6.6
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 1582 KKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKK 1615
++K +KKKK K KK K K K + KKK +
Sbjct: 81 RRKPATTAVEKKKKGKSKKNKLKGKKDEDKKKAR 114
Score = 30.2 bits (68), Expect = 7.5
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 1596 KKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKK 1629
++K +K KK K KK K K KK + KKK +
Sbjct: 81 RRKPATTAVEKKKKGKSKKNKLKGKKDEDKKKAR 114
Score = 29.8 bits (67), Expect = 8.6
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 1594 KKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKK 1627
++K +KKK K KK K K KK + KKK +
Sbjct: 81 RRKPATTAVEKKKKGKSKKNKLKGKKDEDKKKAR 114
Score = 29.8 bits (67), Expect = 8.7
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 1585 KKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKK 1618
++K +KKKK K KK K KK + KKK +
Sbjct: 81 RRKPATTAVEKKKKGKSKKNKLKGKKDEDKKKAR 114
Score = 29.8 bits (67), Expect = 8.7
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 1583 KKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKK 1616
++K +KKKK K KK K K K + KKK +
Sbjct: 81 RRKPATTAVEKKKKGKSKKNKLKGKKDEDKKKAR 114
>gnl|CDD|218078 pfam04419, 4F5, 4F5 protein family. Members of this family are short
proteins that are rich in aspartate, glutamate, lysine
and arginine. Although the function of these proteins is
unknown, they are found to be ubiquitously expressed.
Length = 38
Score = 31.0 bits (71), Expect = 0.25
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 1578 GRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKK 1613
RG ++++ +++ KK KKKKK K + K
Sbjct: 2 ARGNQREQARERNAKKAAKKKKKGAKSQLKAAAKAL 37
Score = 29.1 bits (66), Expect = 1.5
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 1598 KKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKK 1629
++++ +++ KK KKKKK K + K K
Sbjct: 6 QREQARERNAKKAAKKKKKGAKSQLKAAAKAL 37
Score = 28.7 bits (65), Expect = 1.6
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 1574 ARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKK 1606
+RE E+ KK KKKKK K + K K
Sbjct: 5 NQREQARERNAKKAAKKKKKGAKSQLKAAAKAL 37
>gnl|CDD|224495 COG1579, COG1579, Zn-ribbon protein, possibly nucleic acid-binding
[General function prediction only].
Length = 239
Score = 35.0 bits (81), Expect = 0.26
Identities = 18/92 (19%), Positives = 36/92 (39%), Gaps = 16/92 (17%)
Query: 773 MEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQI-----ELCK--QKLERAEKLI 825
++ R L +L+AL L + ++LE+Q+ E+ + ++++RAE+ +
Sbjct: 23 EPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKL 82
Query: 826 GG---------LGGEKTRWSEASANLSKALVN 848
L E E +L L
Sbjct: 83 SAVKDERELRALNIEIQIAKERINSLEDELAE 114
>gnl|CDD|223747 COG0675, COG0675, Transposase and inactivated derivatives [DNA
replication, recombination, and repair].
Length = 364
Score = 35.4 bits (81), Expect = 0.26
Identities = 12/49 (24%), Positives = 26/49 (53%)
Query: 1585 KKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
+ +K K+ KK +K+ +KK + K++KK K K + +++ +
Sbjct: 194 GTVPIPRDGRKLLKRLKKAQKRLSRKKSRSKRRKKAKLKLARLRERIRN 242
Score = 34.6 bits (79), Expect = 0.47
Identities = 13/48 (27%), Positives = 25/48 (52%)
Query: 1589 KKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSR 1636
+ +K K+ KK +K+ +KK + K++KK K K + ++ R
Sbjct: 194 GTVPIPRDGRKLLKRLKKAQKRLSRKKSRSKRRKKAKLKLARLRERIR 241
>gnl|CDD|145004 pfam01632, Ribosomal_L35p, Ribosomal protein L35.
Length = 61
Score = 31.9 bits (73), Expect = 0.26
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 1582 KKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKK 1626
K K K K+ K+ K K++K K+ KK K+K++ +KK
Sbjct: 2 KMKTVKAAAKRFKRTASGKIKRRKAGKRHLLTKKSTKRKRRLRKK 46
Score = 31.1 bits (71), Expect = 0.51
Identities = 15/47 (31%), Positives = 24/47 (51%)
Query: 1588 KKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKY 1634
K K K K+ K+ K K++K K+ KK K+K++ +KK
Sbjct: 2 KMKTVKAAAKRFKRTASGKIKRRKAGKRHLLTKKSTKRKRRLRKKVL 48
Score = 30.3 bits (69), Expect = 0.78
Identities = 15/45 (33%), Positives = 23/45 (51%)
Query: 1586 KKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKK 1630
K K K K+ K+ K K +K K+ KK K+K++ +KK
Sbjct: 2 KMKTVKAAAKRFKRTASGKIKRRKAGKRHLLTKKSTKRKRRLRKK 46
Score = 29.9 bits (68), Expect = 1.1
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 1596 KKKKKKKKKKKYKKKKKKKKKKKK--KKKKKKKKKKKKKKYSRE 1637
K K K K++K+ K K++K K+ KK K+K+ R+
Sbjct: 2 KMKTVKAAAKRFKRTASGKIKRRKAGKRHLLTKKSTKRKRRLRK 45
Score = 28.8 bits (65), Expect = 2.9
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 1583 KKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKK 1627
K K K K+ K+ K K++K K+ KK K+K++ +KK
Sbjct: 2 KMKTVKAAAKRFKRTASGKIKRRKAGKRHLLTKKSTKRKRRLRKK 46
>gnl|CDD|234402 TIGR03928, T7_EssCb_Firm, type VII secretion protein EssC, C-terminal
domain. This model describes the C-terminal domain, or
longer subunit, of the Firmicutes type VII secretion
protein EssC. This protein (homologous to EccC in
Actinobacteria) and the WXG100 target proteins are the
only homologous parts of type VII secretion between
Firmicutes and Actinobacteria [Protein fate, Protein and
peptide secretion and trafficking].
Length = 1296
Score = 35.7 bits (83), Expect = 0.26
Identities = 11/37 (29%), Positives = 23/37 (62%)
Query: 1591 KKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKK 1627
++KKK KK +K+ + Y+ KK+K+ + +K++
Sbjct: 84 REKKKYKKDVEKRNRSYRLYLDKKRKELQALSEKQRH 120
Score = 35.3 bits (82), Expect = 0.33
Identities = 11/37 (29%), Positives = 23/37 (62%)
Query: 1588 KKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKK 1624
++KKK KK +K+ + + Y KK+K+ + +K++
Sbjct: 84 REKKKYKKDVEKRNRSYRLYLDKKRKELQALSEKQRH 120
Score = 31.9 bits (73), Expect = 3.5
Identities = 11/38 (28%), Positives = 22/38 (57%), Gaps = 5/38 (13%)
Query: 1602 KKKKKYKKKKKKKKKK-----KKKKKKKKKKKKKKKKY 1634
++KKKYKK +K+ + KK+K+ + +K++
Sbjct: 84 REKKKYKKDVEKRNRSYRLYLDKKRKELQALSEKQRHV 121
Score = 31.5 bits (72), Expect = 5.1
Identities = 10/37 (27%), Positives = 22/37 (59%)
Query: 1587 KKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKK 1623
++KKK KK +K+ + + KK+K+ + +K++
Sbjct: 84 REKKKYKKDVEKRNRSYRLYLDKKRKELQALSEKQRH 120
Score = 31.5 bits (72), Expect = 5.1
Identities = 11/37 (29%), Positives = 21/37 (56%)
Query: 1580 GEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKK 1616
EKKK KK +K+ + + KK+K+ + +K++
Sbjct: 84 REKKKYKKDVEKRNRSYRLYLDKKRKELQALSEKQRH 120
>gnl|CDD|216134 pfam00816, Histone_HNS, H-NS histone family.
Length = 92
Score = 32.6 bits (75), Expect = 0.27
Identities = 11/60 (18%), Positives = 24/60 (40%), Gaps = 7/60 (11%)
Query: 1582 KKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKK-------KKKKKKKKKKKKKKKKKKKY 1634
+ +K +K+ + +K ++ + ++ + KKK KKK+ KY
Sbjct: 4 EALIEKLEKEIEAARKAERAAALAEIRELAAEYGLTLEELLGGAAKKKAKKKRAPVPAKY 63
>gnl|CDD|215278 PLN02502, PLN02502, lysyl-tRNA synthetase.
Length = 553
Score = 35.4 bits (82), Expect = 0.27
Identities = 13/47 (27%), Positives = 22/47 (46%)
Query: 1576 REGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKK 1622
E GE K KK+ K K+ +++K K++ K K + +K
Sbjct: 1 AESNGEPLSKNALKKRLKAKQAEEEKAAKEEAKAAAAAAAAKGRSRK 47
Score = 31.9 bits (73), Expect = 3.0
Identities = 10/38 (26%), Positives = 19/38 (50%)
Query: 1589 KKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKK 1626
K KK+ K K+ +++K K++ K K + +K
Sbjct: 10 KNALKKRLKAKQAEEEKAAKEEAKAAAAAAAAKGRSRK 47
Score = 31.1 bits (71), Expect = 5.6
Identities = 10/38 (26%), Positives = 18/38 (47%)
Query: 1594 KKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKK 1631
K KK+ K K+ ++K K++ K K + +K
Sbjct: 10 KNALKKRLKAKQAEEEKAAKEEAKAAAAAAAAKGRSRK 47
Score = 31.1 bits (71), Expect = 6.4
Identities = 11/45 (24%), Positives = 19/45 (42%)
Query: 1593 KKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSRE 1637
K KK+ K K+ + +K K++ K K + +K E
Sbjct: 10 KNALKKRLKAKQAEEEKAAKEEAKAAAAAAAAKGRSRKSAAADDE 54
Score = 30.7 bits (70), Expect = 7.6
Identities = 10/45 (22%), Positives = 19/45 (42%)
Query: 1596 KKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGG 1640
K KK+ K K +++K K++ K K + +K +
Sbjct: 10 KNALKKRLKAKQAEEEKAAKEEAKAAAAAAAAKGRSRKSAAADDE 54
Score = 30.7 bits (70), Expect = 8.1
Identities = 10/44 (22%), Positives = 20/44 (45%)
Query: 1575 RREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKK 1618
E + KK+ K K+ +++K K++ K K + +K
Sbjct: 4 NGEPLSKNALKKRLKAKQAEEEKAAKEEAKAAAAAAAAKGRSRK 47
Score = 30.7 bits (70), Expect = 8.8
Identities = 11/47 (23%), Positives = 22/47 (46%)
Query: 1600 KKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGGGGEKEL 1646
K KK+ K K+ +++K K++ K K SR+ ++ +
Sbjct: 10 KNALKKRLKAKQAEEEKAAKEEAKAAAAAAAAKGRSRKSAAADDETM 56
Score = 30.3 bits (69), Expect = 9.7
Identities = 9/46 (19%), Positives = 17/46 (36%)
Query: 1598 KKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGGGGE 1643
K KK+ K K+ +++K K++ K K +
Sbjct: 10 KNALKKRLKAKQAEEEKAAKEEAKAAAAAAAAKGRSRKSAAADDET 55
>gnl|CDD|191868 pfam07839, CaM_binding, Plant calmodulin-binding domain. The
sequences featured in this family are found repeated in a
number of plant calmodulin-binding proteins, and are
thought to constitute the calmodulin-binding domains.
Binding of the proteins to calmodulin depends on the
presence of calcium ions. These proteins are thought to
be involved in various processes, such as plant defence
responses and stolonisation or tuberization.
Length = 115
Score = 33.1 bits (76), Expect = 0.28
Identities = 14/57 (24%), Positives = 28/57 (49%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSRE 1637
++KK++++ KK+ K +K+K K KK K+ K +K +K + +
Sbjct: 1 TEEKKEERRSKKEDPKPEKEKPKSWSNLKKVILLKRFVKSLEKVRKFNPRGPNFLPL 57
Score = 30.8 bits (70), Expect = 2.1
Identities = 18/64 (28%), Positives = 30/64 (46%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGG 1640
E+KK++++ KK+ K +K+K K KK K+ K +K +K + E
Sbjct: 2 EEKKEERRSKKEDPKPEKEKPKSWSNLKKVILLKRFVKSLEKVRKFNPRGPNFLPLEPDP 61
Query: 1641 GGEK 1644
EK
Sbjct: 62 EAEK 65
Score = 30.0 bits (68), Expect = 3.0
Identities = 13/47 (27%), Positives = 22/47 (46%)
Query: 1576 REGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKK 1622
E R +K+ K +K+K K KK K++ K +K +K +
Sbjct: 6 EERRSKKEDPKPEKEKPKSWSNLKKVILLKRFVKSLEKVRKFNPRGP 52
Score = 28.9 bits (65), Expect = 8.5
Identities = 12/47 (25%), Positives = 20/47 (42%)
Query: 1579 RGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKK 1625
+ KK+ K +K+K K KK K+ K +K +K +
Sbjct: 6 EERRSKKEDPKPEKEKPKSWSNLKKVILLKRFVKSLEKVRKFNPRGP 52
>gnl|CDD|234501 TIGR04211, SH3_and_anchor, SH3 domain protein. Members of this
protein family have a signal peptide, a strongly
conserved SH3 domain, a variable region, and then a
C-terminal hydrophobic transmembrane alpha helix region.
Length = 198
Score = 34.6 bits (80), Expect = 0.28
Identities = 20/64 (31%), Positives = 33/64 (51%)
Query: 778 SKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKLERAEKLIGGLGGEKTRWSE 837
S R +L + +L L++ELA+ + EL+ + + KQ+L E + L E R +
Sbjct: 63 SARERLPELQQELAELQEELAELQEQLAELQQENQELKQELSTLEAELERLQKELARIKQ 122
Query: 838 ASAN 841
SAN
Sbjct: 123 LSAN 126
Score = 32.3 bits (74), Expect = 1.5
Identities = 24/115 (20%), Positives = 46/115 (40%), Gaps = 16/115 (13%)
Query: 759 KAKLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDE----------LAQKSKDKKELE 808
+ +LAE + + A E+L + + + +L L E + Q S + EL+
Sbjct: 72 QQELAELQEELAELQEQLAELQQENQELKQELSTLEAELERLQKELARIKQLSANAIELD 131
Query: 809 DQIELCKQKLERAEKLIGGLGGEKTRWSEASAN---LSKALVNCIGDILICAGII 860
++ +++L ++ L E R E L V +G +L G+I
Sbjct: 132 EENRELREELAELKQENEALEAENERLQENEQRRWFLYGGGVLFLGLLL---GLI 183
Score = 31.9 bits (73), Expect = 1.6
Identities = 17/68 (25%), Positives = 33/68 (48%)
Query: 757 PKKAKLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQ 816
+ +L E + + A E+L + QLA + + Q L+ EL+ + + L+ ++ KQ
Sbjct: 63 SARERLPELQQELAELQEELAELQEQLAELQQENQELKQELSTLEAELERLQKELARIKQ 122
Query: 817 KLERAEKL 824
A +L
Sbjct: 123 LSANAIEL 130
>gnl|CDD|221185 pfam11719, Drc1-Sld2, DNA replication and checkpoint protein. Genome
duplication is precisely regulated by cyclin-dependent
kinases CDKs, which bring about the onset of S phase by
activating replication origins and then prevent
relicensing of origins until mitosis is completed. The
optimum sequence motif for CDK phosphorylation is
S/T-P-K/R-K/R, and Drc1-Sld2 is found to have at least 11
potential phosphorylation sites. Drc1 is required for DNA
synthesis and S-M replication checkpoint control. Drc1
associates with Cdc2 and is phosphorylated at the onset
of S phase when Cdc2 is activated. Thus Cdc2 promotes DNA
replication by phosphorylating Drc1 and regulating its
association with Cut5. Sld2 and Sld3 represent the
minimal set of S-CDK substrates required for DNA
replication.
Length = 397
Score = 35.2 bits (81), Expect = 0.29
Identities = 15/54 (27%), Positives = 30/54 (55%), Gaps = 6/54 (11%)
Query: 1577 EGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYK------KKKKKKKKKKKKKKKK 1624
+ E + ++ K++ +KK+K KKK +K+K ++ K + K+KK K +
Sbjct: 339 DEDDEDEDDEESKEEVEKKQKVKKKPRKRKVNPVSNNFRRLKLRNKRKKGFKGR 392
Score = 33.6 bits (77), Expect = 0.80
Identities = 18/75 (24%), Positives = 37/75 (49%), Gaps = 6/75 (8%)
Query: 1568 YIVDLLARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKK------KKKK 1621
+D + E G + + + ++ K++ +KK+K KKK +K+K ++ K
Sbjct: 321 PKLDEKSLSEFLGYMGGIDEDDEDEDDEESKEEVEKKQKVKKKPRKRKVNPVSNNFRRLK 380
Query: 1622 KKKKKKKKKKKKYSR 1636
+ K+KK K ++ R
Sbjct: 381 LRNKRKKGFKGRFRR 395
Score = 32.8 bits (75), Expect = 1.4
Identities = 12/52 (23%), Positives = 24/52 (46%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKK 1632
E K +K + + + ++ K++ +KK+K KKK +K+K
Sbjct: 319 EIPKLDEKSLSEFLGYMGGIDEDDEDEDDEESKEEVEKKQKVKKKPRKRKVN 370
Score = 31.3 bits (71), Expect = 4.9
Identities = 11/52 (21%), Positives = 25/52 (48%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKK 1632
++ K +K + + + ++ K++ +KK+K KKK +K+K
Sbjct: 317 HEEIPKLDEKSLSEFLGYMGGIDEDDEDEDDEESKEEVEKKQKVKKKPRKRK 368
Score = 30.5 bits (69), Expect = 8.4
Identities = 15/57 (26%), Positives = 22/57 (38%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSRE 1637
E+ K +K + K + KYK+ K KK K + KK+K E
Sbjct: 12 ERAFAAKNGRKPSRDDIKANPEIAAKYKQYSKLKKLLSAKTIEPSPKKRKHSSPDGE 68
>gnl|CDD|216298 pfam01101, HMG14_17, HMG14 and HMG17.
Length = 93
Score = 32.5 bits (74), Expect = 0.31
Identities = 20/49 (40%), Positives = 25/49 (51%)
Query: 1575 RREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKK 1623
RR R K K + K KK KKKK K KK K KK+ K+++ K
Sbjct: 20 RRSARLSAKPAPPKPEPKPKKAAAKKKKPAVKGKKGAKGKKETKQEEAK 68
Score = 30.6 bits (69), Expect = 1.4
Identities = 16/36 (44%), Positives = 21/36 (58%)
Query: 1590 KKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKK 1625
K + K KK KKKK K KK K KK+ K+++ K
Sbjct: 33 KPEPKPKKAAAKKKKPAVKGKKGAKGKKETKQEEAK 68
Score = 30.6 bits (69), Expect = 1.6
Identities = 19/57 (33%), Positives = 27/57 (47%)
Query: 1577 EGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
E + K K++ K++ + K K + K KK KKKK K KK K KK+
Sbjct: 6 EAKDAAKVTKQEPKRRSARLSAKPAPPKPEPKPKKAAAKKKKPAVKGKKGAKGKKET 62
Score = 30.6 bits (69), Expect = 1.6
Identities = 18/54 (33%), Positives = 27/54 (50%)
Query: 1597 KKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGGGGEKELVQKN 1650
K + K KK KKKK K KK K KK+ K+++ K+ + G + E +
Sbjct: 33 KPEPKPKKAAAKKKKPAVKGKKGAKGKKETKQEEAKEENPAENGETKTEEAPAS 86
Score = 30.2 bits (68), Expect = 2.0
Identities = 16/36 (44%), Positives = 21/36 (58%)
Query: 1591 KKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKK 1626
K + K KK KKKK K KK K KK+ K+++ K
Sbjct: 33 KPEPKPKKAAAKKKKPAVKGKKGAKGKKETKQEEAK 68
Score = 29.4 bits (66), Expect = 3.9
Identities = 16/36 (44%), Positives = 21/36 (58%)
Query: 1592 KKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKK 1627
K + K KK KKKK K KK K KK+ K+++ K
Sbjct: 33 KPEPKPKKAAAKKKKPAVKGKKGAKGKKETKQEEAK 68
>gnl|CDD|217023 pfam02414, Borrelia_orfA, Borrelia ORF-A. This protein is encoded by
an open reading frame in plasmid borne DNA repeats of
Borrelia species. This protein is known as ORF-A. The
function of this putative protein is unknown.
Length = 285
Score = 34.7 bits (80), Expect = 0.31
Identities = 21/52 (40%), Positives = 26/52 (50%)
Query: 1584 KKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYS 1635
KK K++ KKK K +K K KKY KK K KK K K K K ++
Sbjct: 140 NKKIKEESKKKNSKNIEKLKIKKYFKKCNFKTNLKKDIKIKLLKIIKIEENF 191
Score = 33.1 bits (76), Expect = 0.99
Identities = 19/55 (34%), Positives = 25/55 (45%)
Query: 1580 GEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKY 1634
K++ KKK K +K K KK KK +K KK K K K K ++ K
Sbjct: 142 KIKEESKKKNSKNIEKLKIKKYFKKCNFKTNLKKDIKIKLLKIIKIEENFLIKNK 196
Score = 33.1 bits (76), Expect = 1.0
Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
Query: 1581 EKKKKKKKKKKKKKKKKKK-----KKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
+KK+ +K +K +K K K +K K K K K KK KKKKK KK + K
Sbjct: 223 KKKQIEKFFQKIYEKYKNKPHFIIEKNKYKDLNKIIGKFKKSFKKKKKNSKKNYENIK 280
Score = 32.4 bits (74), Expect = 1.7
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 10/63 (15%)
Query: 1582 KKKKKKKKKKKKKKKKKKKKKKKK----------KYKKKKKKKKKKKKKKKKKKKKKKKK 1631
K+KK ++ KK+ KKK K K KK K++ KKK K +K K
Sbjct: 101 KEKKIERFKKRVNAYFKKKSNKNGSVEKNECINNKNNVINKKIKEESKKKNSKNIEKLKI 160
Query: 1632 KKY 1634
KKY
Sbjct: 161 KKY 163
Score = 32.0 bits (73), Expect = 2.5
Identities = 22/66 (33%), Positives = 28/66 (42%), Gaps = 8/66 (12%)
Query: 1581 EKKKKKKKKKK--------KKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKK 1632
EK K KK KK K K K K K ++ K KK K K+K K K K
Sbjct: 156 EKLKIKKYFKKCNFKTNLKKDIKIKLLKIIKIEENFLIKNKKLKNKQKTLKNILYNLKDK 215
Query: 1633 KYSREG 1638
+ ++G
Sbjct: 216 ELEKKG 221
Score = 30.8 bits (70), Expect = 5.6
Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 8/77 (10%)
Query: 1567 SYIVDLLARREGRGEKKKKKKKKKKKKKK---KKKKKKKKKKKYKKKKKKKKKKKKKKKK 1623
++ ++ E K KK K K+K K K K+ +KK YKKK+ +K +K +K
Sbjct: 179 IKLLKIIKIEENFLIKNKKLKNKQKTLKNILYNLKDKELEKKGYKKKQIEKFFQKIYEKY 238
Query: 1624 KKK-----KKKKKKKYS 1635
K K +K K K +
Sbjct: 239 KNKPHFIIEKNKYKDLN 255
Score = 30.8 bits (70), Expect = 6.0
Identities = 20/49 (40%), Positives = 23/49 (46%)
Query: 1589 KKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSRE 1637
KK K++ KKK K +K K KK KK K KK K K K E
Sbjct: 140 NKKIKEESKKKNSKNIEKLKIKKYFKKCNFKTNLKKDIKIKLLKIIKIE 188
>gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division
and chromosome partitioning].
Length = 420
Score = 35.1 bits (81), Expect = 0.32
Identities = 18/83 (21%), Positives = 34/83 (40%), Gaps = 4/83 (4%)
Query: 762 LAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDE----LAQKSKDKKELEDQIELCKQK 817
LA A+ A + +L + ++ KL L +E LAQ + + + ++E +
Sbjct: 173 LAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEERKKTLAQLNSELSADQKKLEELRAN 232
Query: 818 LERAEKLIGGLGGEKTRWSEASA 840
R + I + EA+A
Sbjct: 233 ESRLKNEIASAEAAAAKAREAAA 255
Score = 31.6 bits (72), Expect = 3.6
Identities = 18/88 (20%), Positives = 40/88 (45%), Gaps = 3/88 (3%)
Query: 759 KAKLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKL 818
L A ++ +++A+L T+L + +A + +LAQ +++K+ Q+ +L
Sbjct: 163 IDALKATLKQLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEERKKTLAQLN---SEL 219
Query: 819 ERAEKLIGGLGGEKTRWSEASANLSKAL 846
+K + L ++R A+ A
Sbjct: 220 SADQKKLEELRANESRLKNEIASAEAAA 247
>gnl|CDD|225816 COG3277, GAR1, RNA-binding protein involved in rRNA processing
[Translation, ribosomal structure and biogenesis].
Length = 98
Score = 32.3 bits (74), Expect = 0.38
Identities = 12/42 (28%), Positives = 19/42 (45%)
Query: 1590 KKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKK 1631
K + K + Y K +KK+K +KK++ KK K
Sbjct: 57 KPDDRDVKLESLVGDTLYIPPDKLIRKKRKLPRKKRRPKKPK 98
Score = 30.0 bits (68), Expect = 2.4
Identities = 11/42 (26%), Positives = 18/42 (42%)
Query: 1591 KKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKK 1632
K + K + K +KK+K +KK++ KK K
Sbjct: 57 KPDDRDVKLESLVGDTLYIPPDKLIRKKRKLPRKKRRPKKPK 98
Score = 28.5 bits (64), Expect = 7.9
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 1580 GEKKKKKKKKKKKKKKKKKKKKK 1602
K +KK+K +KK++ KK K
Sbjct: 76 PPDKLIRKKRKLPRKKRRPKKPK 98
>gnl|CDD|173965 cd08045, TAF4, TATA Binding Protein (TBP) Associated Factor 4 (TAF4)
is one of several TAFs that bind TBP and is involved in
forming Transcription Factor IID (TFIID) complex. The
TATA Binding Protein (TBP) Associated Factor 4 (TAF4) is
one of several TAFs that bind TBP and are involved in
forming the Transcription Factor IID (TFIID) complex.
TFIID is one of seven General Transcription Factors (GTF)
(TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are
involved in accurate initiation of transcription by RNA
polymerase II in eukaryote. TFIID plays an important role
in the recognition of promoter DNA and assembly of the
pre-initiation complex. TFIID complex is composed of the
TBP and at least 13 TAFs. TAFs from various species were
originally named by their predicted molecular weight or
their electrophoretic mobility in polyacrylamide gels. A
new, unified nomenclature for the pol II TAFs has been
suggested to show the relationship between TAF orthologs
and paralogs. Several hypotheses are proposed for TAFs
functions such as serving as activator-binding sites,
core-promoter recognition or a role in essential
catalytic activity. Each TAF, with the help of a specific
activator, is required only for the expression of subset
of genes and is not universally involved for
transcription as are GTFs. In yeast and human cells, TAFs
have been found as components of other complexes besides
TFIID. Several TAFs interact via histone-fold (HFD)
motifs; HFD is the interaction motif involved in
heterodimerization of the core histones and their
assembly into nucleosome octamers. The minimal HFD
contains three alpha-helices linked by two loops and is
found in core histones, TAFS and many other transcription
factors. TFIID has a histone octamer-like substructure.
TAF4 domain interacts with TAF12 and makes a novel
histone-like heterodimer that binds DNA and has a core
promoter function of a subset of genes.
Length = 212
Score = 33.8 bits (78), Expect = 0.42
Identities = 7/50 (14%), Positives = 35/50 (70%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKK 1630
E+ ++++++K+ ++++++ + K + ++ + K+K K+ +K++ ++ + +
Sbjct: 120 EQLEREEEEKRDEEERERLLRAAKSRSEQSRLKQKAKEMQKEEDEEMRHR 169
Score = 31.5 bits (72), Expect = 2.7
Identities = 13/70 (18%), Positives = 39/70 (55%), Gaps = 12/70 (17%)
Query: 1573 LARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKK-------- 1624
L + E R E++K+ ++++++ + K + ++ + +K K+ +K++ ++ + +
Sbjct: 119 LEQLE-REEEEKRDEEERERLLRAAKSRSEQSRLKQKAKEMQKEEDEEMRHRAANATALA 177
Query: 1625 ---KKKKKKK 1631
+KKKK+
Sbjct: 178 AIGGRKKKKR 187
Score = 31.5 bits (72), Expect = 3.0
Identities = 7/50 (14%), Positives = 33/50 (66%)
Query: 1589 KKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREG 1638
+K+ + ++ ++++++K+ ++++++ + K + ++ + K+K K+ +E
Sbjct: 113 RKQLRFLEQLEREEEEKRDEEERERLLRAAKSRSEQSRLKQKAKEMQKEE 162
Score = 30.0 bits (68), Expect = 7.3
Identities = 7/49 (14%), Positives = 34/49 (69%)
Query: 1582 KKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKK 1630
+K+ + ++ ++++++K+ ++++++ + K + ++ + K+K K+ +K+
Sbjct: 113 RKQLRFLEQLEREEEEKRDEEERERLLRAAKSRSEQSRLKQKAKEMQKE 161
Score = 30.0 bits (68), Expect = 8.0
Identities = 7/49 (14%), Positives = 33/49 (67%)
Query: 1583 KKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKK 1631
+K+ + ++ ++++++K+ +++++ + K + ++ + K+K K+ +K+
Sbjct: 113 RKQLRFLEQLEREEEEKRDEEERERLLRAAKSRSEQSRLKQKAKEMQKE 161
Score = 30.0 bits (68), Expect = 8.3
Identities = 8/53 (15%), Positives = 34/53 (64%)
Query: 1585 KKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSRE 1637
+K+ + ++ ++++++K+ +++ ++ + K + ++ + K+K K+ +K+ E
Sbjct: 113 RKQLRFLEQLEREEEEKRDEEERERLLRAAKSRSEQSRLKQKAKEMQKEEDEE 165
Score = 30.0 bits (68), Expect = 8.8
Identities = 7/49 (14%), Positives = 33/49 (67%)
Query: 1584 KKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKK 1632
+K+ + ++ ++++++K+ ++++ + + K + ++ + K+K K+ +K+
Sbjct: 113 RKQLRFLEQLEREEEEKRDEEERERLLRAAKSRSEQSRLKQKAKEMQKE 161
>gnl|CDD|221937 pfam13148, DUF3987, Protein of unknown function (DUF3987). A family
of uncharacterized proteins found by clustering human gut
metagenomic sequences.
Length = 379
Score = 34.5 bits (80), Expect = 0.43
Identities = 12/33 (36%), Positives = 22/33 (66%)
Query: 1601 KKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
+++ K+Y+ +K+ + +KK +KK KK KK K
Sbjct: 75 EEELKEYEAEKEIWEAEKKGLEKKAKKAIKKGK 107
Score = 31.1 bits (71), Expect = 4.7
Identities = 14/54 (25%), Positives = 29/54 (53%)
Query: 1574 ARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKK 1627
R E E K+ + +K+ + +KK +KK KK KK K ++ ++ + + ++
Sbjct: 70 LREEYEEELKEYEAEKEIWEAEKKGLEKKAKKAIKKGKDEEALAEELLELEAEE 123
>gnl|CDD|234767 PRK00448, polC, DNA polymerase III PolC; Validated.
Length = 1437
Score = 35.2 bits (82), Expect = 0.43
Identities = 13/57 (22%), Positives = 31/57 (54%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSRE 1637
E K++ +K + +K+++ +K K+ + KK + +KKK+ K K+ + ++
Sbjct: 164 EIDDSKEELEKFEAQKEEEDEKLAKEALEAMKKLEAEKKKQSKNFDPKEGPVQIGKK 220
Score = 34.4 bits (80), Expect = 0.72
Identities = 33/159 (20%), Positives = 65/159 (40%), Gaps = 14/159 (8%)
Query: 1464 EAKNVRIIDELLGKFPEQFDEEAAGRKYPILYNQSMNTVLKQELIRYNRLTVIIKKSLQE 1523
E +N+ +ELL + + E+A + ++LK++ + +IIK + +
Sbjct: 81 EVENITFTEELLLDYWNEIIEKAKK------NSPLFKSLLKKQKVEVEGNKLIIKVNNEI 134
Query: 1524 VRQAVKGLIVMSKELEEINTSIMFGKIPQAWASKSYPSLKPLGSYIVDLLARREGRGEKK 1583
R +K +L + FG + K + + A++E EK
Sbjct: 135 ERDHLKK--KHLPKLIKQYEKFGFGIL------KIDFEIDDSKEELEKFEAQKEEEDEKL 186
Query: 1584 KKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKK 1622
K+ + KK + +KKK+ K K+ + KK K++
Sbjct: 187 AKEALEAMKKLEAEKKKQSKNFDPKEGPVQIGKKIDKEE 225
Score = 34.0 bits (79), Expect = 0.84
Identities = 15/57 (26%), Positives = 32/57 (56%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSRE 1637
K++ +K + +K+++ +K K+ + KK + +KKK+ K K+ + KK +E
Sbjct: 168 SKEELEKFEAQKEEEDEKLAKEALEAMKKLEAEKKKQSKNFDPKEGPVQIGKKIDKE 224
Score = 33.7 bits (78), Expect = 1.2
Identities = 15/54 (27%), Positives = 30/54 (55%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKY 1634
EK + +K+++ +K K+ + KK + +KKK+ K K+ + KK K++
Sbjct: 173 EKFEAQKEEEDEKLAKEALEAMKKLEAEKKKQSKNFDPKEGPVQIGKKIDKEEI 226
Score = 32.5 bits (75), Expect = 2.8
Identities = 13/57 (22%), Positives = 30/57 (52%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSRE 1637
+++ +K + +K+++ +K K+ + K + +KKK+ K K+ + KK E
Sbjct: 169 KEELEKFEAQKEEEDEKLAKEALEAMKKLEAEKKKQSKNFDPKEGPVQIGKKIDKEE 225
Score = 32.1 bits (74), Expect = 3.4
Identities = 14/61 (22%), Positives = 33/61 (54%)
Query: 1588 KKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGGGGEKELV 1647
K++ +K + +K+++ +K K+ + KK + +KKK+ K K+ + G ++E+
Sbjct: 168 SKEELEKFEAQKEEEDEKLAKEALEAMKKLEAEKKKQSKNFDPKEGPVQIGKKIDKEEIT 227
Query: 1648 Q 1648
Sbjct: 228 P 228
Score = 30.6 bits (70), Expect = 9.9
Identities = 14/63 (22%), Positives = 29/63 (46%)
Query: 1575 RREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKY 1634
+ G G K + K++ +K + +K+++ K K+ + KK + +KKK+ K
Sbjct: 152 EKFGFGILKIDFEIDDSKEELEKFEAQKEEEDEKLAKEALEAMKKLEAEKKKQSKNFDPK 211
Query: 1635 SRE 1637
Sbjct: 212 EGP 214
>gnl|CDD|129141 TIGR00030, S21p, ribosomal protein S21. This model describes
bacterial ribosomal protein S21 and most mitochondrial
and chloroplast equivalents [Protein synthesis, Ribosomal
proteins: synthesis and modification].
Length = 58
Score = 31.1 bits (71), Expect = 0.45
Identities = 14/53 (26%), Positives = 33/53 (62%)
Query: 1576 REGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKK 1628
+EG ++ K+K +K+ ++ KK++ Y+K +++++K+K K+ +KK
Sbjct: 6 KEGESIDSALRRFKRKLEKEGILRELKKRRYYEKPSERRRRKEKAAAKRIRKK 58
Score = 30.3 bits (69), Expect = 0.84
Identities = 12/43 (27%), Positives = 30/43 (69%)
Query: 1587 KKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKK 1629
++ K+K +K+ ++ KK++Y +K +++++K+K K+ +KK
Sbjct: 16 RRFKRKLEKEGILRELKKRRYYEKPSERRRRKEKAAAKRIRKK 58
Score = 28.4 bits (64), Expect = 4.2
Identities = 10/43 (23%), Positives = 28/43 (65%)
Query: 1592 KKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKY 1634
++ K+K +K+ ++ KK++ +K +++++K+K K+ +K
Sbjct: 16 RRFKRKLEKEGILRELKKRRYYEKPSERRRRKEKAAAKRIRKK 58
>gnl|CDD|240292 PTZ00148, PTZ00148, 40S ribosomal protein S8; Provisional.
Length = 205
Score = 33.8 bits (78), Expect = 0.46
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 1583 KKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKK 1615
KKKK KK+++ KK KKK + K + +KK K
Sbjct: 123 KKKKYKKEEENKKAKKKSESLVAKLEVRKKNHK 155
Score = 31.5 bits (72), Expect = 2.6
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 1588 KKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKK 1620
KKKK KK+++ KK KKK + K + +KK K
Sbjct: 123 KKKKYKKEEENKKAKKKSESLVAKLEVRKKNHK 155
Score = 31.5 bits (72), Expect = 2.6
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 1594 KKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKK 1626
KKKK KK+++ KK KKK + K + +KK K
Sbjct: 123 KKKKYKKEEENKKAKKKSESLVAKLEVRKKNHK 155
Score = 31.5 bits (72), Expect = 2.6
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 1587 KKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKK 1619
KKKK KK+++ KK KKK + K + +KK K
Sbjct: 123 KKKKYKKEEENKKAKKKSESLVAKLEVRKKNHK 155
Score = 31.5 bits (72), Expect = 2.7
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 1598 KKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKK 1630
KKKK KK++ KK KKK + K + +KK K
Sbjct: 123 KKKKYKKEEENKKAKKKSESLVAKLEVRKKNHK 155
Score = 31.5 bits (72), Expect = 2.7
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 1590 KKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKK 1622
KKKK KK+++ KK KKK + K + +KK K
Sbjct: 123 KKKKYKKEEENKKAKKKSESLVAKLEVRKKNHK 155
Score = 31.5 bits (72), Expect = 2.8
Identities = 15/30 (50%), Positives = 21/30 (70%)
Query: 1603 KKKKYKKKKKKKKKKKKKKKKKKKKKKKKK 1632
KKKKYKK+++ KK KKK + K + +KK
Sbjct: 123 KKKKYKKEEENKKAKKKSESLVAKLEVRKK 152
Score = 31.5 bits (72), Expect = 2.9
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 1599 KKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKK 1631
KKKK KK+ + KK KKK + K + +KK K
Sbjct: 123 KKKKYKKEEENKKAKKKSESLVAKLEVRKKNHK 155
Score = 31.1 bits (71), Expect = 3.1
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 1597 KKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKK 1629
KKKK KK+++ KK KKK + K + +KK K
Sbjct: 123 KKKKYKKEEENKKAKKKSESLVAKLEVRKKNHK 155
Score = 31.1 bits (71), Expect = 3.5
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 1600 KKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKK 1632
KKKK KK ++ KK KKK + K + +KK K
Sbjct: 123 KKKKYKKEEENKKAKKKSESLVAKLEVRKKNHK 155
Score = 31.1 bits (71), Expect = 4.0
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 1604 KKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
KKK KK+++ KK KKK + K + +KK
Sbjct: 123 KKKKYKKEEENKKAKKKSESLVAKLEVRKK 152
Score = 30.7 bits (70), Expect = 4.2
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 1589 KKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKK 1621
KKKK KK+++ KK KKK K + +KK K
Sbjct: 123 KKKKYKKEEENKKAKKKSESLVAKLEVRKKNHK 155
Score = 30.7 bits (70), Expect = 4.5
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 1586 KKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKK 1618
KKKK KK+++ KK KKK + K + +KK K
Sbjct: 123 KKKKYKKEEENKKAKKKSESLVAKLEVRKKNHK 155
Score = 30.7 bits (70), Expect = 4.7
Identities = 15/34 (44%), Positives = 22/34 (64%)
Query: 1580 GEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKK 1613
G+KKK KK+++ KK KKK + K + +KK K
Sbjct: 122 GKKKKYKKEEENKKAKKKSESLVAKLEVRKKNHK 155
Score = 30.7 bits (70), Expect = 5.1
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 1595 KKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKK 1627
KKKK KK+++ K KKK + K + +KK K
Sbjct: 123 KKKKYKKEEENKKAKKKSESLVAKLEVRKKNHK 155
Score = 30.7 bits (70), Expect = 5.2
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 1593 KKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKK 1625
KKKK KK+++ KK KK + K + +KK K
Sbjct: 123 KKKKYKKEEENKKAKKKSESLVAKLEVRKKNHK 155
Score = 30.3 bits (69), Expect = 5.4
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 1582 KKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKK 1614
KKKK KK+++ KK KKK + K +KK K
Sbjct: 123 KKKKYKKEEENKKAKKKSESLVAKLEVRKKNHK 155
Score = 30.3 bits (69), Expect = 5.8
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 1591 KKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKK 1623
KKKK KK+++ KK KK + K + +KK K
Sbjct: 123 KKKKYKKEEENKKAKKKSESLVAKLEVRKKNHK 155
Score = 30.0 bits (68), Expect = 7.3
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 1585 KKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKK 1617
KKKK KK+++ KK KKK + K + +KK K
Sbjct: 123 KKKKYKKEEENKKAKKKSESLVAKLEVRKKNHK 155
Score = 30.0 bits (68), Expect = 7.3
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 1596 KKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKK 1628
KKKK KK+++ K KKK + K + +KK K
Sbjct: 123 KKKKYKKEEENKKAKKKSESLVAKLEVRKKNHK 155
Score = 30.0 bits (68), Expect = 8.5
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 1592 KKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKK 1624
KKKK KK+++ KK K K + K + +KK K
Sbjct: 123 KKKKYKKEEENKKAKKKSESLVAKLEVRKKNHK 155
>gnl|CDD|218738 pfam05766, NinG, Bacteriophage Lambda NinG protein. NinG or Rap is
involved in recombination. Rap (recombination adept with
plasmid) increases lambda-by-plasmid recombination
catalyzed by Escherichia coli's RecBCD pathway.
Length = 188
Score = 33.9 bits (78), Expect = 0.46
Identities = 11/42 (26%), Positives = 25/42 (59%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKK 1622
E K++K ++KK+K + + ++++ K +K+K K + K
Sbjct: 29 ECALALKREKAQEKKRKAEAQAERRELKARKEKLKTRSDWLK 70
Score = 32.7 bits (75), Expect = 1.1
Identities = 13/50 (26%), Positives = 28/50 (56%)
Query: 1588 KKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSRE 1637
K++K ++KK+K + + + ++ K +K+K K + K+ + KY R
Sbjct: 33 ALKREKAQEKKRKAEAQAERRELKARKEKLKTRSDWLKEAQAAVNKYIRL 82
Score = 31.5 bits (72), Expect = 2.5
Identities = 10/40 (25%), Positives = 23/40 (57%)
Query: 1580 GEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKK 1619
K++K ++KK+K + + ++++ K K+K K + K
Sbjct: 31 ALALKREKAQEKKRKAEAQAERRELKARKEKLKTRSDWLK 70
Score = 30.8 bits (70), Expect = 4.6
Identities = 9/37 (24%), Positives = 22/37 (59%)
Query: 1579 RGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKK 1615
+K ++KK+K + + ++++ K +K+K K + K
Sbjct: 34 LKREKAQEKKRKAEAQAERRELKARKEKLKTRSDWLK 70
Score = 30.4 bits (69), Expect = 5.5
Identities = 10/38 (26%), Positives = 23/38 (60%)
Query: 1586 KKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKK 1623
K++K ++KK+K + + +++ K +K+K K + K
Sbjct: 33 ALKREKAQEKKRKAEAQAERRELKARKEKLKTRSDWLK 70
>gnl|CDD|219783 pfam08297, U3_snoRNA_assoc, U3 snoRNA associated. This family of
proteins is associated with U3 snoRNA. U3 snoRNA is
required for nucleolar processing of pre-18S ribosomal
RNA.
Length = 87
Score = 32.0 bits (73), Expect = 0.46
Identities = 16/54 (29%), Positives = 24/54 (44%)
Query: 1579 RGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKK 1632
+ +KKK K + KK +K+ K KK + +K K +KK K K
Sbjct: 29 KKQKKKNKLRFLKKLEKRPKDVKKGPVTVRVLSDNNSRKLPPKAEKKIVNSKDK 82
Score = 28.2 bits (63), Expect = 9.5
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 1610 KKKKKKKKKKKKKKKKKKKKKKKK 1633
KK+KKK K + KK +K+ K KK
Sbjct: 29 KKQKKKNKLRFLKKLEKRPKDVKK 52
>gnl|CDD|239570 cd03488, Topoisomer_IB_N_htopoI_like, Topoisomer_IB_N_htopoI_like :
N-terminal DNA binding fragment found in eukaryotic DNA
topoisomerase (topo) IB proteins similar to the monomeric
yeast and human topo I. Topo I enzymes are divided into:
topo type IA (bacterial) and type IB (eukaryotic). Topo
I relaxes superhelical tension in duplex DNA by creating
a single-strand nick, the broken strand can then rotate
around the unbroken strand to remove DNA supercoils and,
the nick is religated, liberating topo I. These enzymes
regulate the topological changes that accompany DNA
replication, transcription and other nuclear processes.
Human topo I is the target of a diverse set of anticancer
drugs including camptothecins (CPTs). CPTs bind to the
topo I-DNA complex and inhibit religation of the
single-strand nick, resulting in the accumulation of topo
I-DNA adducts. This family may represent more than one
structural domain.
Length = 215
Score = 33.9 bits (78), Expect = 0.47
Identities = 17/51 (33%), Positives = 27/51 (52%)
Query: 1582 KKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKK 1632
KK K++K K K + Y K +K++KK K++KK K +K+K
Sbjct: 68 KKVMTKEEKVIIKDFSKCDFTQMFAYFKAQKEEKKAMSKEEKKAIKAEKEK 118
Score = 30.8 bits (70), Expect = 5.3
Identities = 10/28 (35%), Positives = 20/28 (71%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYK 1608
+K++KK K++KK K +K+K +++Y
Sbjct: 97 QKEEKKAMSKEEKKAIKAEKEKLEEEYG 124
Score = 30.0 bits (68), Expect = 9.6
Identities = 14/60 (23%), Positives = 29/60 (48%), Gaps = 7/60 (11%)
Query: 1576 REGRGEKKKKKKKKKKKKKK-------KKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKK 1628
++ + K++K K K K +K++KK K++KK K +K+K +++
Sbjct: 65 KDFKKVMTKEEKVIIKDFSKCDFTQMFAYFKAQKEEKKAMSKEEKKAIKAEKEKLEEEYG 124
>gnl|CDD|216205 pfam00937, Corona_nucleoca, Coronavirus nucleocapsid protein.
Length = 346
Score = 34.3 bits (79), Expect = 0.50
Identities = 13/47 (27%), Positives = 21/47 (44%)
Query: 1568 YIVDLLARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKK 1614
+ +LA G K+K KK + KK + KK+ K + K+
Sbjct: 191 LVAAVLAALAKLGFGKQKSSSKKPSRVTKKSAAEAAKKQLNKPRWKR 237
>gnl|CDD|223831 COG0760, SurA, Parvulin-like peptidyl-prolyl isomerase
[Posttranslational modification, protein turnover,
chaperones].
Length = 320
Score = 34.3 bits (78), Expect = 0.50
Identities = 19/142 (13%), Positives = 50/142 (35%), Gaps = 6/142 (4%)
Query: 1497 QSMNTVLKQELIRYNRLTVIIKKSLQEVRQAVKGLIVMSKELEEINTSIMFGKIPQAWAS 1556
Q + ++L L + ++ Q V ++ + + + +
Sbjct: 55 QKERNIALEQLGEQLLLLQAAAELGIKISQQVVAQLIAEIAVLDKLAKELLLGLSDE-QG 113
Query: 1557 KSYPSLKP-----LGSYIVDLLARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKK 1611
K + KP G + +R ++++ + + K + K++ KK + + +
Sbjct: 114 KQLIAEKPAFQDVEGKFDARAYLKRLRIKGLTEEQEAEALRDKLQNKQQGKKVTEVQARH 173
Query: 1612 KKKKKKKKKKKKKKKKKKKKKK 1633
K + K K+ KK ++
Sbjct: 174 ILVKAEAKAKEALALLKKGVRE 195
Score = 33.5 bits (76), Expect = 0.89
Identities = 12/65 (18%), Positives = 29/65 (44%)
Query: 1566 GSYIVDLLARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKK 1625
G +I+ + +R+ + + + K K+ K++ +K +K K ++K K K+
Sbjct: 253 GYHIIKVEKKRDAKLDFPEVKAVKEISLKQELLQKAALEKLLKGEQKSFDKLLKEAAIDI 312
Query: 1626 KKKKK 1630
+
Sbjct: 313 LSAQL 317
>gnl|CDD|190741 pfam03763, Remorin_C, Remorin, C-terminal region. Remorins are
plant-specific plasma membrane-associated proteins. In
tobacco remorin co-purifies with lipid rafts. Most
remorins have a variable, proline-rich C-half and a more
conserved N-half that is predicted to form coiled coils.
Consistent with this, circular dichroism studies have
demonstrated that much of the protein is alpha-helical.
Remorins exist in plasma membrane preparations as
oligomeric structures and form filaments in vitro. The
proteins can bind polyanions including the extracellular
matrix component oligogalacturonic acid (OGA). In vitro,
remorin in plasma membrane preparations is phosphorylated
(principally on threonine residues) in the presence of
OGA and thus co-purifies with a protein kinases(s). The
biological functions of remorins are unknown but roles as
components of the membrane/cytoskeleton are possible.
Length = 112
Score = 32.3 bits (74), Expect = 0.50
Identities = 18/52 (34%), Positives = 30/52 (57%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKK 1632
E KKK K + + KK ++K +KKK + +K K K KK ++K+ + K+
Sbjct: 36 ENKKKAKAEAELKKIERKLEKKKAEAAEKLKNKLAAAHKKAEEKRATAEAKR 87
Score = 30.8 bits (70), Expect = 1.7
Identities = 16/62 (25%), Positives = 32/62 (51%), Gaps = 9/62 (14%)
Query: 1583 KKKKKKKKKKKKKKKKKKKKKKKKYKKK---------KKKKKKKKKKKKKKKKKKKKKKK 1633
KK + + + ++ +K K KY+++ KKK K + + KK ++K +KKK +
Sbjct: 1 SKKSEAESRADAWEEAEKAKINNKYQREEAKIQAWENKKKAKAEAELKKIERKLEKKKAE 60
Query: 1634 YS 1635
+
Sbjct: 61 AA 62
>gnl|CDD|234874 PRK00955, PRK00955, hypothetical protein; Provisional.
Length = 620
Score = 34.5 bits (80), Expect = 0.50
Identities = 17/40 (42%), Positives = 19/40 (47%)
Query: 1578 GRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKK 1617
G G K KK KKK KK KK+KKK+KK
Sbjct: 581 GNGPKCLIPPKKPKKKSNKKNNNNNYSSNNSKKRKKKRKK 620
Score = 34.2 bits (79), Expect = 0.64
Identities = 15/37 (40%), Positives = 17/37 (45%)
Query: 1594 KKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKK 1630
K KK KKK KK KK+KKK+KK
Sbjct: 584 PKCLIPPKKPKKKSNKKNNNNNYSSNNSKKRKKKRKK 620
Score = 34.2 bits (79), Expect = 0.67
Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 4/49 (8%)
Query: 1575 RREGR----GEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKK 1619
++ GR G K KK KKK KK KK+KKK+KK
Sbjct: 572 KKAGREDLIGNGPKCLIPPKKPKKKSNKKNNNNNYSSNNSKKRKKKRKK 620
Score = 33.4 bits (77), Expect = 1.3
Identities = 14/37 (37%), Positives = 16/37 (43%)
Query: 1595 KKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKK 1631
K KK KK KK KK+KKK+KK
Sbjct: 584 PKCLIPPKKPKKKSNKKNNNNNYSSNNSKKRKKKRKK 620
Score = 33.4 bits (77), Expect = 1.3
Identities = 16/37 (43%), Positives = 18/37 (48%)
Query: 1585 KKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKK 1621
K KK KKK KK Y KK+KKK+KK
Sbjct: 584 PKCLIPPKKPKKKSNKKNNNNNYSSNNSKKRKKKRKK 620
Score = 33.0 bits (76), Expect = 1.5
Identities = 15/37 (40%), Positives = 17/37 (45%)
Query: 1593 KKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKK 1629
K KK KKK KK KK+KKK+KK
Sbjct: 584 PKCLIPPKKPKKKSNKKNNNNNYSSNNSKKRKKKRKK 620
Score = 33.0 bits (76), Expect = 1.6
Identities = 15/37 (40%), Positives = 17/37 (45%)
Query: 1586 KKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKK 1622
K KK KKK KK KK+KKK+KK
Sbjct: 584 PKCLIPPKKPKKKSNKKNNNNNYSSNNSKKRKKKRKK 620
Score = 32.6 bits (75), Expect = 2.3
Identities = 14/37 (37%), Positives = 16/37 (43%)
Query: 1597 KKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
K KK KK KK KK+KKK+KK
Sbjct: 584 PKCLIPPKKPKKKSNKKNNNNNYSSNNSKKRKKKRKK 620
Score = 32.2 bits (74), Expect = 2.4
Identities = 15/37 (40%), Positives = 17/37 (45%)
Query: 1590 KKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKK 1626
K KK KKK KK KK+KKK+KK
Sbjct: 584 PKCLIPPKKPKKKSNKKNNNNNYSSNNSKKRKKKRKK 620
Score = 32.2 bits (74), Expect = 2.6
Identities = 15/37 (40%), Positives = 17/37 (45%)
Query: 1588 KKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKK 1624
K KK KKK KK KK+KKK+KK
Sbjct: 584 PKCLIPPKKPKKKSNKKNNNNNYSSNNSKKRKKKRKK 620
Score = 32.2 bits (74), Expect = 2.7
Identities = 14/37 (37%), Positives = 16/37 (43%)
Query: 1591 KKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKK 1627
K KK KKK K KK+KKK+KK
Sbjct: 584 PKCLIPPKKPKKKSNKKNNNNNYSSNNSKKRKKKRKK 620
Score = 32.2 bits (74), Expect = 3.0
Identities = 14/37 (37%), Positives = 16/37 (43%)
Query: 1592 KKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKK 1628
K KK KKK K KK+KKK+KK
Sbjct: 584 PKCLIPPKKPKKKSNKKNNNNNYSSNNSKKRKKKRKK 620
Score = 31.8 bits (73), Expect = 3.1
Identities = 15/37 (40%), Positives = 17/37 (45%)
Query: 1589 KKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKK 1625
K KK KKK KK KK+KKK+KK
Sbjct: 584 PKCLIPPKKPKKKSNKKNNNNNYSSNNSKKRKKKRKK 620
Score = 31.8 bits (73), Expect = 3.2
Identities = 14/37 (37%), Positives = 16/37 (43%)
Query: 1596 KKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKK 1632
K KK K K KK KK+KKK+KK
Sbjct: 584 PKCLIPPKKPKKKSNKKNNNNNYSSNNSKKRKKKRKK 620
Score = 30.7 bits (70), Expect = 7.2
Identities = 16/43 (37%), Positives = 18/43 (41%)
Query: 1571 DLLARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKK 1613
DL+ KK KKK KK KK KKK+KK
Sbjct: 578 DLIGNGPKCLIPPKKPKKKSNKKNNNNNYSSNNSKKRKKKRKK 620
>gnl|CDD|149438 pfam08374, Protocadherin, Protocadherin. The structure of
protocadherins is similar to that of classic cadherins
(pfam00028), but particularly on the cytoplasmic domains
they also have some unique features. They are expressed
in a variety of organisms and are found in high
concentrations in the brain where they seem to be
localised mainly at cell-cell contact sites. Their
expression seems to be developmentally regulated.
Length = 223
Score = 33.7 bits (77), Expect = 0.51
Identities = 15/41 (36%), Positives = 26/41 (63%)
Query: 1588 KKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKK 1628
++ ++KK + KK+ + + ++ K+KKKKK KKKK K
Sbjct: 64 RQAERKKGYQAGKKETEDWFSPNQENKQKKKKKDKKKKSPK 104
Score = 32.5 bits (74), Expect = 1.3
Identities = 15/41 (36%), Positives = 26/41 (63%)
Query: 1589 KKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKK 1629
++ ++KK + KK+ + + ++ K+KKKKK KKKK K
Sbjct: 64 RQAERKKGYQAGKKETEDWFSPNQENKQKKKKKDKKKKSPK 104
Score = 32.5 bits (74), Expect = 1.5
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 8/45 (17%)
Query: 1599 KKKKKKKKYKKKKKKKKK--------KKKKKKKKKKKKKKKKKYS 1635
++ ++KK Y+ KK+ + K+KKKKK KKKK K
Sbjct: 64 RQAERKKGYQAGKKETEDWFSPNQENKQKKKKKDKKKKSPKSLLL 108
Score = 31.0 bits (70), Expect = 4.4
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 1579 RGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKK 1620
+ ++KK + KK+ + ++ K KKKKK KKKK K
Sbjct: 63 CRQAERKKGYQAGKKETEDWFSPNQENKQKKKKKDKKKKSPK 104
Score = 31.0 bits (70), Expect = 4.6
Identities = 18/49 (36%), Positives = 27/49 (55%)
Query: 1570 VDLLARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKK 1618
V +L R + E+KK + KK+ + ++ K+K KKK KKKK K
Sbjct: 56 VVVLVRYCRQAERKKGYQAGKKETEDWFSPNQENKQKKKKKDKKKKSPK 104
Score = 30.6 bits (69), Expect = 6.0
Identities = 16/44 (36%), Positives = 26/44 (59%)
Query: 1579 RGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKK 1622
R ++ ++KK + KK+ + ++ K+KKKKK KKKK K
Sbjct: 61 RYCRQAERKKGYQAGKKETEDWFSPNQENKQKKKKKDKKKKSPK 104
Score = 30.2 bits (68), Expect = 7.6
Identities = 15/41 (36%), Positives = 24/41 (58%)
Query: 1583 KKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKK 1623
++ ++KK + KK+ + + K+KKKKK KKKK K
Sbjct: 64 RQAERKKGYQAGKKETEDWFSPNQENKQKKKKKDKKKKSPK 104
Score = 30.2 bits (68), Expect = 7.7
Identities = 16/44 (36%), Positives = 24/44 (54%)
Query: 1576 REGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKK 1619
R R ++KK + KK+ + ++ K+ KKKK KKKK K
Sbjct: 61 RYCRQAERKKGYQAGKKETEDWFSPNQENKQKKKKKDKKKKSPK 104
Score = 30.2 bits (68), Expect = 7.7
Identities = 15/41 (36%), Positives = 25/41 (60%)
Query: 1587 KKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKK 1627
++ ++KK + KK+ + ++ K+KKKKK KKKK K
Sbjct: 64 RQAERKKGYQAGKKETEDWFSPNQENKQKKKKKDKKKKSPK 104
>gnl|CDD|238706 cd01418, Ribosomal_L19e_A, Ribosomal protein L19e, archaeal. L19e is
found in the large ribosomal subunit of eukaryotes and
archaea. L19e is distinct from the ribosomal subunit L19,
which is found in prokaryotes. It consists of two small
globular domains connected by an extended segment. It is
located toward the surface of the large subunit, with one
exposed end involved in forming the intersubunit bridge
with the small subunit. The other exposed end is
involved in forming the translocon binding site, along
with L22, L23, L24, L29, and L31e subunits.
Length = 145
Score = 33.1 bits (76), Expect = 0.52
Identities = 20/70 (28%), Positives = 39/70 (55%), Gaps = 7/70 (10%)
Query: 1578 GRGEKKKKKKKKKKKKKKKKKKKKK-----KKKKYKKKKKKKKKKKKKKKKKKK--KKKK 1630
GR +++ +K+KK +++ +K KK KK+++ K + ++ K+ + K K KK
Sbjct: 58 GRLKERHEKRKKGRRRGPGSRKGKKGARTPKKERWIKTIRALRRYLKELRDKGKIDKKTY 117
Query: 1631 KKKYSREGGG 1640
+K Y + GG
Sbjct: 118 RKLYRKAKGG 127
Score = 32.7 bits (75), Expect = 0.74
Identities = 13/45 (28%), Positives = 25/45 (55%)
Query: 1594 KKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREG 1638
K+ K K KK + + K++ +K+KK +++ +K KK +R
Sbjct: 43 KEGVIKAKPKKGISRGRLKERHEKRKKGRRRGPGSRKGKKGARTP 87
Score = 32.3 bits (74), Expect = 0.77
Identities = 17/63 (26%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Query: 1578 GRGEKKKKKKK---KKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKY 1634
G K K KK + + K++ +K+KK +++ +K KK + KK++ K + ++Y
Sbjct: 43 KEGVIKAKPKKGISRGRLKERHEKRKKGRRRGPGSRKGKKGARTPKKERWIKTIRALRRY 102
Query: 1635 SRE 1637
+E
Sbjct: 103 LKE 105
Score = 31.9 bits (73), Expect = 1.4
Identities = 15/59 (25%), Positives = 32/59 (54%)
Query: 1579 RGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSRE 1637
RG K++ +K+KK +++ +K KK KK++ K + ++ K+ + K K ++
Sbjct: 57 RGRLKERHEKRKKGRRRGPGSRKGKKGARTPKKERWIKTIRALRRYLKELRDKGKIDKK 115
Score = 29.2 bits (66), Expect = 9.4
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 1601 KKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGGG---GEKE 1645
K+ K K KK + + K++ +K+KK +++ SR+G G +KE
Sbjct: 43 KEGVIKAKPKKGISRGRLKERHEKRKKGRRRGPGSRKGKKGARTPKKE 90
>gnl|CDD|237034 PRK12278, PRK12278, 50S ribosomal protein L21/unknown domain fusion
protein; Provisional.
Length = 221
Score = 33.7 bits (77), Expect = 0.52
Identities = 12/97 (12%), Positives = 22/97 (22%), Gaps = 25/97 (25%)
Query: 1577 EGRGEKKKKKKKKKK-------------------------KKKKKKKKKKKKKKKYKKKK 1611
+ +G+K KK+++ K K +
Sbjct: 66 QIKGDKVIHFKKRRRQSSRRTKGHRQLLTLVRITEILASGADASGVKAATGAGKVEVAAE 125
Query: 1612 KKKKKKKKKKKKKKKKKKKKKKYSREGGGGGEKELVQ 1648
K KK+ K G +L +
Sbjct: 126 AAPAKAKKEAAPKAAPAPAAAAAPPAAAAAGADDLTK 162
Score = 32.1 bits (73), Expect = 1.9
Identities = 7/58 (12%), Positives = 13/58 (22%)
Query: 1589 KKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGGGGEKEL 1646
K K + + K KK+ K + G ++
Sbjct: 106 ADASGVKAATGAGKVEVAAEAAPAKAKKEAAPKAAPAPAAAAAPPAAAAAGADDLTKI 163
>gnl|CDD|240380 PTZ00362, PTZ00362, hypothetical protein; Provisional.
Length = 479
Score = 34.3 bits (79), Expect = 0.54
Identities = 16/51 (31%), Positives = 24/51 (47%)
Query: 1594 KKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGGGGEK 1644
KKKKKKKKK K+ + KK ++KK+ ++ + G E
Sbjct: 9 KKKKKKKKKASKESSNGSQNSKKTIFMYNLSRRKKRHNEEGTFNNYGTNES 59
Score = 32.4 bits (74), Expect = 2.4
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 1582 KKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKK 1621
KKKKKKKKK K+ + KK + ++KK+ ++
Sbjct: 9 KKKKKKKKKASKESSNGSQNSKKTIFMYNLSRRKKRHNEE 48
Score = 30.9 bits (70), Expect = 7.3
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 1583 KKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKK 1622
KKKKKKKKK K+ + KK ++KK+ ++
Sbjct: 9 KKKKKKKKKASKESSNGSQNSKKTIFMYNLSRRKKRHNEE 48
>gnl|CDD|216108 pfam00769, ERM, Ezrin/radixin/moesin family. This family of
proteins contain a band 4.1 domain (pfam00373), at their
amino terminus. This family represents the rest of these
proteins.
Length = 244
Score = 33.9 bits (78), Expect = 0.55
Identities = 13/65 (20%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Query: 759 KAKLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKL 818
+L E A + E+L A++ ++ L +E +K + ++L+ ++ ++
Sbjct: 63 NRRLEEEAAASEEERERL---EAEVDEATAEVAKLEEEREKKEAETRQLQQELREAQEAH 119
Query: 819 ERAEK 823
ERA +
Sbjct: 120 ERARQ 124
>gnl|CDD|223619 COG0545, FkpA, FKBP-type peptidyl-prolyl cis-trans isomerases 1
[Posttranslational modification, protein turnover,
chaperones].
Length = 205
Score = 33.5 bits (77), Expect = 0.62
Identities = 12/70 (17%), Positives = 25/70 (35%), Gaps = 6/70 (8%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK------Y 1634
+K+ + ++ +++ ++ K K K + K +K K+K K Y
Sbjct: 46 ALVQKEAALEALQRAEQRLQQAAKAKRAKDAAANAAEGKAFLEKNAKEKGVKTLPSGLQY 105
Query: 1635 SREGGGGGEK 1644
G G
Sbjct: 106 KVLKAGDGAA 115
Score = 30.5 bits (69), Expect = 5.0
Identities = 15/86 (17%), Positives = 33/86 (38%), Gaps = 11/86 (12%)
Query: 1565 LGSYIVDLLARREGRGEKK-----------KKKKKKKKKKKKKKKKKKKKKKKYKKKKKK 1613
LG + LA + R +K +K+ + ++ +++ ++ K K+ K
Sbjct: 17 LGLQLGQSLAELKLRLDKDALLAGLEDALALVQKEAALEALQRAEQRLQQAAKAKRAKDA 76
Query: 1614 KKKKKKKKKKKKKKKKKKKKYSREGG 1639
+ K +K K+K + G
Sbjct: 77 AANAAEGKAFLEKNAKEKGVKTLPSG 102
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC,
primarily archaeal type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. It is found
in a single copy and is homodimeric in prokaryotes, but
six paralogs (excluded from this family) are found in
eukarotes, where SMC proteins are heterodimeric. This
family represents the SMC protein of archaea and a few
bacteria (Aquifex, Synechocystis, etc); the SMC of other
bacteria is described by TIGR02168. The N- and
C-terminal domains of this protein are well conserved,
but the central hinge region is skewed in composition
and highly divergent [Cellular processes, Cell division,
DNA metabolism, Chromosome-associated proteins].
Length = 1164
Score = 34.7 bits (80), Expect = 0.62
Identities = 22/92 (23%), Positives = 41/92 (44%), Gaps = 7/92 (7%)
Query: 759 KAKLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKL 818
+ E E +++ + Q + +L +L +EL + +++ ELE ++E +Q L
Sbjct: 217 LKEKREYE--GYELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLL 274
Query: 819 ERAEKLIGGLGGE-----KTRWSEASANLSKA 845
E K I LG E K + E A ++
Sbjct: 275 EELNKKIKDLGEEEQLRVKEKIGELEAEIASL 306
Score = 34.3 bits (79), Expect = 0.79
Identities = 16/75 (21%), Positives = 34/75 (45%)
Query: 749 DRVIKIVGPKKAKLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELE 808
DR+ + + +LA+ A A K+N + +++ +L Q + D + E
Sbjct: 409 DRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYE 468
Query: 809 DQIELCKQKLERAEK 823
++ K++ +R EK
Sbjct: 469 QELYDLKEEYDRVEK 483
Score = 33.9 bits (78), Expect = 0.93
Identities = 12/66 (18%), Positives = 29/66 (43%)
Query: 758 KKAKLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQK 817
+AK+ E E + + ++ + +L + L EL ++ +E ++ +++
Sbjct: 432 IEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRE 491
Query: 818 LERAEK 823
L AE
Sbjct: 492 LAEAEA 497
Score = 33.1 bits (76), Expect = 1.5
Identities = 7/66 (10%), Positives = 33/66 (50%)
Query: 1567 SYIVDLLARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKK 1626
+DL + + ++ + KK++ +++ ++ + + + + KK++ + + + +
Sbjct: 840 EQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLR 899
Query: 1627 KKKKKK 1632
+ ++K
Sbjct: 900 ELERKI 905
Score = 31.6 bits (72), Expect = 4.2
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Query: 762 LAEAEADYAVQMEKLNSKRAQLATVLGKLQA----LRDELAQKSKDKKELEDQIELCKQK 817
L E ++E LN K+ +L L +L+A L L K++ ELE Q+ ++K
Sbjct: 845 LKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERK 904
Query: 818 LERAE 822
+E E
Sbjct: 905 IEELE 909
>gnl|CDD|235505 PRK05563, PRK05563, DNA polymerase III subunits gamma and tau;
Validated.
Length = 559
Score = 34.5 bits (80), Expect = 0.63
Identities = 42/215 (19%), Positives = 83/215 (38%), Gaps = 50/215 (23%)
Query: 1442 VLGNILLCAQQGSTPGAQPGDAEAKNVRIIDELL--GKFPEQFDEE------------AA 1487
L +++ +G A ++I++ELL GK P +F E+ +
Sbjct: 248 ALDDLVDAIVEGDVAKA---------LKILEELLDEGKDPNRFIEDLIYYLRDLLLVKTS 298
Query: 1488 GRKYPILYNQSMNTVLKQ--ELIRYNRLTVIIK---KSLQEVRQAVKGLIVMSKELEEIN 1542
+ + + + K+ E + RL +I + Q+++ + I + E+
Sbjct: 299 PELEILDESTENDELFKELSEKLDIERLYRMIDILNDAQQQIKWTNQPRIYL-----EVA 353
Query: 1543 TSIMFGKIPQAWASKSYPSLKPLGSYIVDLLARREGRGEKKKKKKKKKKKKKKKKKKKKK 1602
+ + A L+ L + L +++ K+ K +
Sbjct: 354 L-VKLCEQAAASPEYD-TELEVLLQRVEQL---------------EQELKQLKAQPVGVA 396
Query: 1603 KKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSRE 1637
++K KKK+KKK KKKK K + K K K+ +R+
Sbjct: 397 PEQKEKKKEKKKNKKKKYKVPRGKIYKVLKEATRQ 431
>gnl|CDD|222716 pfam14374, Ribos_L4_asso_C, 60S ribosomal protein L4 C-terminal
domain. This family is found at the very C-terminal of
60 ribosomal L4 proteins.
Length = 80
Score = 31.4 bits (72), Expect = 0.64
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 7/52 (13%)
Query: 1585 KKKKKKKKKKKKKKKKKKKKKK-------YKKKKKKKKKKKKKKKKKKKKKK 1629
+ KKK K++ +KK K + Y K ++ +KK+KK K +K
Sbjct: 29 RAPKKKAKRRVVQKKNPLKNLQAMLKLNPYAKVARRAALLAEKKRKKAKAEK 80
Score = 29.1 bits (66), Expect = 3.7
Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 9/52 (17%)
Query: 1590 KKKKKKKKKKKKKKKKKYKKKK---------KKKKKKKKKKKKKKKKKKKKK 1632
+ KKK K++ +KK K + K ++ +KK+KK K +K
Sbjct: 29 RAPKKKAKRRVVQKKNPLKNLQAMLKLNPYAKVARRAALLAEKKRKKAKAEK 80
Score = 28.7 bits (65), Expect = 4.6
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
Query: 1584 KKKKKKKKKKKKKKKKKKKKKKKYKK-----KKKKKKKKKKKKKKKKKKKKK 1630
+ KKK K++ +KK K + K K ++ +KK+KK K +K
Sbjct: 29 RAPKKKAKRRVVQKKNPLKNLQAMLKLNPYAKVARRAALLAEKKRKKAKAEK 80
>gnl|CDD|149160 pfam07926, TPR_MLP1_2, TPR/MLP1/MLP2-like protein. The sequences
featured in this family are similar to a region of human
TPR protein and to yeast myosin-like proteins 1 (MLP1)
and 2 (MLP2). These proteins share a number of features;
for example, they all have coiled-coil regions and all
three are associated with nuclear pores. TPR is thought
to be a component of nuclear pore complex- attached
intra-nuclear filaments, and is implicated in nuclear
protein import. Moreover, its N-terminal region is
involved in the activation of oncogenic kinases,
possibly by mediating the dimerisation of kinase domains
or by targeting these kinases to the nuclear pore
complex. MLP1 and MLP2 are involved in the process of
telomere length regulation, where they are thought to
interact with proteins such as Tel1p and modulate their
activity.
Length = 132
Score = 32.3 bits (74), Expect = 0.66
Identities = 16/66 (24%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
Query: 758 KKAKLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKD----KKELEDQIEL 813
K A+ E Q+ +L + AQL + ++ + EL++ + KK LED++
Sbjct: 53 KHAEDIEELQALRKQLNELKKEIAQLKA---EAESAQAELSEAEESWEEQKKMLEDELSE 109
Query: 814 CKQKLE 819
++++E
Sbjct: 110 LEKRIE 115
Score = 30.3 bits (69), Expect = 3.5
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 7/63 (11%)
Query: 761 KLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKLER 820
EA+ Y ++ K A + +LQALR +L + K+ +L+ + E + +L
Sbjct: 39 IANEAQQKYERELVKH-------AEDIEELQALRKQLNELKKEIAQLKAEAESAQAELSE 91
Query: 821 AEK 823
AE+
Sbjct: 92 AEE 94
>gnl|CDD|178450 PLN02859, PLN02859, glutamine-tRNA ligase.
Length = 788
Score = 34.4 bits (79), Expect = 0.66
Identities = 23/87 (26%), Positives = 40/87 (45%), Gaps = 8/87 (9%)
Query: 1520 SLQEVRQAVKGLIVMSKE--LEE---INTSIMFGKI--PQAWASKSYPSLKPLGSYIVDL 1572
S +++ AV + +KE LE+ N + G++ WA K + + +L
Sbjct: 120 SPEDIEAAVNEVFEENKEKILEQRYRTNVGDLLGQVRKRLPWADPKIVK-KLIDKKLYEL 178
Query: 1573 LARREGRGEKKKKKKKKKKKKKKKKKK 1599
L + +K KKKK+K K ++KK
Sbjct: 179 LGEKTAADNEKPVKKKKEKPAKVEEKK 205
>gnl|CDD|224212 COG1293, COG1293, Predicted RNA-binding protein homologous to
eukaryotic snRNP [Transcription].
Length = 564
Score = 34.3 bits (79), Expect = 0.67
Identities = 13/43 (30%), Positives = 25/43 (58%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKK 1623
K +K + KK ++ +++ ++ K KKKK+KKK+ +K
Sbjct: 398 SAKTALEKAEGKKAIEEIREELIEEGLLKSKKKKRKKKEWFEK 440
Score = 33.9 bits (78), Expect = 0.75
Identities = 18/93 (19%), Positives = 34/93 (36%), Gaps = 16/93 (17%)
Query: 1562 LKPLGSYIVDLLARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKK------ 1615
S ++ + + K ++ + K+ + K +K + KK
Sbjct: 357 KSKTPSENAQRYFKKYKKLKGAKVNLDRQLSELKEAIAYYESAKTALEKAEGKKAIEEIR 416
Query: 1616 --------KKKKKKKKKKKKKKKKKK--YSREG 1638
K KKKK+KKK+ +K + S +G
Sbjct: 417 EELIEEGLLKSKKKKRKKKEWFEKFRWFVSSDG 449
>gnl|CDD|183694 PRK12706, flgI, flagellar basal body P-ring protein; Provisional.
Length = 328
Score = 34.1 bits (78), Expect = 0.67
Identities = 31/136 (22%), Positives = 62/136 (45%), Gaps = 10/136 (7%)
Query: 994 VLLKSYYKIQNQLIMTLNNKEIEYNIKFRLYITTRLKNPHYIPEILTKITLINFMITPQG 1053
+L K Y + N++ L +K I+ NIK I +KN +L +I I P+
Sbjct: 187 ILKKGDYTLINRISKILTSKNIKNNIKSGNIIEIEVKNI----GLLEEIENIEIETMPKV 242
Query: 1054 LQNQLLGIVVAKEKPDLET------KKNELIIESANNKKILKETEDKILEVLSSSQGNIL 1107
L ++ I++A ++ + ++ + + NNK I + + L S N L
Sbjct: 243 LIDEQNKIILASTNAEIGPLTFSIERDDQNLFNNKNNKTIKIQIQKMKLNEFISKNSNNL 302
Query: 1108 EDESAVQILTSSKVLS 1123
++ +QI+ ++K ++
Sbjct: 303 SNKELIQIIKAAKKIN 318
>gnl|CDD|200340 TIGR03927, T7SS_EssA_Firm, type VII secretion protein EssA. Members
of this family are associated with type VII secretion of
WXG100 family targets in the Firmicutes, but not in the
Actinobacteria. This highly divergent protein family
consists largely of a central region of highly polar
low-complexity sequence containing occasional LF motifs
in weak repeats about 17 residues in length, flanked by
hydrophobic N- and C-terminal regions [Protein fate,
Protein and peptide secretion and trafficking].
Length = 150
Score = 32.7 bits (75), Expect = 0.68
Identities = 10/47 (21%), Positives = 23/47 (48%)
Query: 1585 KKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKK 1631
K+ +++KK +K K+K + ++ K + + + K KK+
Sbjct: 51 KELFTPEEQKKITFQKHKEKPEQEELKNQLFSENATENNTVKATKKQ 97
Score = 31.2 bits (71), Expect = 2.5
Identities = 10/48 (20%), Positives = 25/48 (52%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKK 1628
+K+ +++KK +K K+K ++++ K + + + K KK+
Sbjct: 50 DKELFTPEEQKKITFQKHKEKPEQEELKNQLFSENATENNTVKATKKQ 97
Score = 30.0 bits (68), Expect = 5.8
Identities = 10/48 (20%), Positives = 25/48 (52%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKK 1628
EKK + +++ + K+ + +KK +K K+K ++++ K +
Sbjct: 32 EKKDIEINTDYLQEETELDKELFTPEEQKKITFQKHKEKPEQEELKNQ 79
Score = 29.7 bits (67), Expect = 7.4
Identities = 12/52 (23%), Positives = 26/52 (50%)
Query: 1586 KKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSRE 1637
K+ +++KK +K K+K +++ K + + + K KK+ +S E
Sbjct: 51 KELFTPEEQKKITFQKHKEKPEQEELKNQLFSENATENNTVKATKKQLFSSE 102
>gnl|CDD|217476 pfam03286, Pox_Ag35, Pox virus Ag35 surface protein.
Length = 198
Score = 33.2 bits (76), Expect = 0.69
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 1592 KKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
K+ KKK+ +K KK KKK K+K +++KK + K
Sbjct: 48 PKQPKKKRPTTPRKPATTKKSKKKDKEKLTEEEKKPESDDDK 89
Score = 32.4 bits (74), Expect = 1.2
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 1583 KKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKK 1624
K+ KKK+ +K KK KKK K+K +++KK + K
Sbjct: 48 PKQPKKKRPTTPRKPATTKKSKKKDKEKLTEEEKKPESDDDK 89
Score = 32.0 bits (73), Expect = 1.7
Identities = 16/63 (25%), Positives = 30/63 (47%)
Query: 1584 KKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGGGGE 1643
K+ KKK+ +K KK KK K+K +++KK + K ++ + + E G +
Sbjct: 48 PKQPKKKRPTTPRKPATTKKSKKKDKEKLTEEEKKPESDDDKTEENENDPDNNEESGDSQ 107
Query: 1644 KEL 1646
+
Sbjct: 108 ESA 110
Score = 32.0 bits (73), Expect = 1.7
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKK 1622
K+ KKK+ +K KK KKK K K +++KK + K
Sbjct: 48 PKQPKKKRPTTPRKPATTKKSKKKDKEKLTEEEKKPESDDDK 89
Score = 31.3 bits (71), Expect = 3.0
Identities = 15/58 (25%), Positives = 28/58 (48%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREG 1638
+KK+ +K KK KKK K+K ++KK + K ++ + ++ S+E
Sbjct: 52 KKKRPTTPRKPATTKKSKKKDKEKLTEEEKKPESDDDKTEENENDPDNNEESGDSQES 109
Score = 30.9 bits (70), Expect = 3.7
Identities = 14/58 (24%), Positives = 27/58 (46%)
Query: 1582 KKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGG 1639
KKK+ +K KK KKK K+K +++KK + K ++ + ++ +
Sbjct: 52 KKKRPTTPRKPATTKKSKKKDKEKLTEEEKKPESDDDKTEENENDPDNNEESGDSQES 109
Score = 30.5 bits (69), Expect = 6.0
Identities = 17/66 (25%), Positives = 29/66 (43%)
Query: 1585 KKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGGGGEK 1644
K+ KKK+ +K KK K K K+K +++KK + K ++ + G +
Sbjct: 48 PKQPKKKRPTTPRKPATTKKSKKKDKEKLTEEEKKPESDDDKTEENENDPDNNEESGDSQ 107
Query: 1645 ELVQKN 1650
E N
Sbjct: 108 ESASAN 113
Score = 30.1 bits (68), Expect = 6.8
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 1582 KKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKK 1623
K+ KKK+ +K KK KKK +K +++KK + K
Sbjct: 48 PKQPKKKRPTTPRKPATTKKSKKKDKEKLTEEEKKPESDDDK 89
>gnl|CDD|215565 PLN03083, PLN03083, E3 UFM1-protein ligase 1 homolog; Provisional.
Length = 803
Score = 34.4 bits (79), Expect = 0.70
Identities = 20/60 (33%), Positives = 26/60 (43%)
Query: 1588 KKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGGGGEKELV 1647
K KKKK K K ++ KK KK +KK + K K + GG+KE V
Sbjct: 417 DKGSKKKKGKSTSTKGGTAESIPDDEEDAPKKGKKNQKKGRDKSSKVPSDSKAGGKKESV 476
Score = 33.6 bits (77), Expect = 1.2
Identities = 17/63 (26%), Positives = 23/63 (36%)
Query: 1584 KKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGGGGE 1643
KKKK K K + ++ KK KK +KK + K K K +E E
Sbjct: 421 KKKKGKSTSTKGGTAESIPDDEEDAPKKGKKNQKKGRDKSSKVPSDSKAGGKKESVKSQE 480
Query: 1644 KEL 1646
Sbjct: 481 DNN 483
Score = 32.1 bits (73), Expect = 3.3
Identities = 19/63 (30%), Positives = 25/63 (39%)
Query: 1586 KKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGGGGEKE 1645
K KKKK K K + ++ KK KK +KK + K K + GG E
Sbjct: 417 DKGSKKKKGKSTSTKGGTAESIPDDEEDAPKKGKKNQKKGRDKSSKVPSDSKAGGKKESV 476
Query: 1646 LVQ 1648
Q
Sbjct: 477 KSQ 479
>gnl|CDD|216581 pfam01577, Peptidase_S30, Potyvirus P1 protease. The potyviridae
family positive stand RNA viruses with genome encoding a
polyprotein. members include zucchini yellow mosaic
virus, and turnip mosaic viruses which cause considerable
losses of crops worldwide. This family consists of a C
terminus region from various plant potyvirus P1 proteins
(found at the N terminus of the polyprotein). The C
terminus of P1 is a serine-type protease responsible for
autocatalytic cleavage between P1 and the helper
component protease pfam00851. The entire P1 protein may
be involved in virus-host interactions.
Length = 245
Score = 33.5 bits (77), Expect = 0.71
Identities = 11/55 (20%), Positives = 33/55 (60%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYS 1635
+ ++ +K+ K K++KK + +K + KK++K K++++++++ + Y+
Sbjct: 6 KVAERLLRKEMSKIKQEKKGRIILRKLSPAQVAKKREKLKREEREERQFLQGAYA 60
Score = 31.5 bits (72), Expect = 2.9
Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 12/76 (15%)
Query: 1570 VDLLARREGRGEKKKKKKKKKKKKKKKK-------KKKKKKKKKYKKKKK-----KKKKK 1617
+ L + KK++K K++++++++ K K K +
Sbjct: 27 IILRKLSPAQVAKKREKLKREEREERQFLQGAYASIVSKITPIGTDKVSKTESVSFRTPY 86
Query: 1618 KKKKKKKKKKKKKKKK 1633
K+ KK KKKKKKKK
Sbjct: 87 YKRTTKKMKKKKKKKK 102
Score = 30.8 bits (70), Expect = 5.1
Identities = 18/90 (20%), Positives = 36/90 (40%), Gaps = 26/90 (28%)
Query: 1570 VDLLARREGR-GEKKKKKKKKKKKKKKKKKKKKKKKKKYK-------------------- 1608
+ ++GR +K + KK++K K++++++++ +
Sbjct: 17 SKIKQEKKGRIILRKLSPAQVAKKREKLKREEREERQFLQGAYASIVSKITPIGTDKVSK 76
Query: 1609 -----KKKKKKKKKKKKKKKKKKKKKKKKK 1633
+ K+ KK KKKKKKKK
Sbjct: 77 TESVSFRTPYYKRTTKKMKKKKKKKKVVMS 106
Score = 30.8 bits (70), Expect = 5.8
Identities = 14/58 (24%), Positives = 33/58 (56%)
Query: 1570 VDLLARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKK 1627
DL A+ R +K+ K K++KK + +K + KK++K K++++++++ +
Sbjct: 1 ADLEAKVAERLLRKEMSKIKQEKKGRIILRKLSPAQVAKKREKLKREEREERQFLQGA 58
>gnl|CDD|240370 PTZ00342, PTZ00342, acyl-CoA synthetase; Provisional.
Length = 746
Score = 34.3 bits (79), Expect = 0.74
Identities = 20/85 (23%), Positives = 34/85 (40%), Gaps = 9/85 (10%)
Query: 1557 KSYPSLKPLGSYIVDLLARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKK-- 1614
P LK L I+D L + + K++K K K+++K + +
Sbjct: 196 NELPHLKKL--IILDTLIKSKEININKEEKNNGSNVNNNGNKNNKEEQKGNDLSNELEDI 253
Query: 1615 -----KKKKKKKKKKKKKKKKKKKY 1634
+ K+K +K K K+K KK
Sbjct: 254 SLGPLEYDKEKLEKIKDLKEKAKKL 278
>gnl|CDD|221016 pfam11180, DUF2968, Protein of unknown function (DUF2968). This
family of proteins has no known function.
Length = 192
Score = 33.2 bits (76), Expect = 0.74
Identities = 11/50 (22%), Positives = 19/50 (38%)
Query: 762 LAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQI 811
+A +EA L +AQ V + Q R E ++ + Q+
Sbjct: 121 IAASEARAERLQADLQLAQAQEQQVAARQQQARQEAVALEAQRQAAQAQL 170
>gnl|CDD|234342 TIGR03752, conj_TIGR03752, integrating conjugative element protein,
PFL_4705 family. Members of this protein family are
found occasionally on plasmids such as the Pseudomonas
putida toluene catabolic TOL plasmid pWWO_p085. Usually,
however, they are found on the bacterial main chromosome
in regions flanked by markers of conjugative transfer
and/or transposition [Mobile and extrachromosomal
element functions, Plasmid functions].
Length = 472
Score = 33.8 bits (78), Expect = 0.74
Identities = 13/70 (18%), Positives = 32/70 (45%), Gaps = 9/70 (12%)
Query: 756 GPKKAKLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCK 815
P++ K E D + L T++ +++ LR LA+ + + L+ + E +
Sbjct: 43 SPEELKALGIEGD---------TPADTLRTLVAEVKELRKRLAKLISENEALKAENERLQ 93
Query: 816 QKLERAEKLI 825
++ + ++ I
Sbjct: 94 KREQSIDQQI 103
>gnl|CDD|129113 TIGR00001, rpmI_bact, ribosomal protein L35. This ribosomal protein
is found in bacteria and organelles only. It is not
closely related to any eukaryotic or archaeal ribosomal
protein [Protein synthesis, Ribosomal proteins: synthesis
and modification].
Length = 63
Score = 30.7 bits (70), Expect = 0.75
Identities = 16/46 (34%), Positives = 22/46 (47%)
Query: 1582 KKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKK 1627
K K K K+ K K K+KK K+ KK K+K+ +KK
Sbjct: 2 KMKTHKAAAKRFKITGSGKIKRKKAGKRHLLTKKSSKRKRNLRKKA 47
Score = 28.8 bits (65), Expect = 3.6
Identities = 16/47 (34%), Positives = 22/47 (46%)
Query: 1588 KKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKY 1634
K K K K+ K K K+KK K+ KK K+K+ +KK
Sbjct: 2 KMKTHKAAAKRFKITGSGKIKRKKAGKRHLLTKKSSKRKRNLRKKAI 48
Score = 28.4 bits (64), Expect = 4.1
Identities = 16/46 (34%), Positives = 21/46 (45%)
Query: 1586 KKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKK 1631
K K K K+ K K K KK K+ KK K+K+ +KK
Sbjct: 2 KMKTHKAAAKRFKITGSGKIKRKKAGKRHLLTKKSSKRKRNLRKKA 47
>gnl|CDD|219189 pfam06818, Fez1, Fez1. This family represents the eukaryotic Fez1
protein. Fez1 contains a leucine-zipper region with
similarity to the DNA-binding domain of the
cAMP-responsive activating-transcription factor 5. There
is evidence that Fez1 inhibits cancer cell growth
through regulation of mitosis, and that its alterations
result in abnormal cell growth. Note that some family
members contain more than one copy of this region.
Length = 200
Score = 32.9 bits (75), Expect = 0.76
Identities = 28/94 (29%), Positives = 49/94 (52%), Gaps = 6/94 (6%)
Query: 759 KAKLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKD---KKELEDQIELCK 815
K +L E++A+ A + ++ S RAQL +L+ +E Q+ +D K LE +E+C+
Sbjct: 16 KQQLKESQAELAQKAGEIVSLRAQLREARAQLRE-SEEQLQELQDALRTKTLE--LEVCE 72
Query: 816 QKLERAEKLIGGLGGEKTRWSEASANLSKALVNC 849
+L+R + L + R A L +AL +C
Sbjct: 73 NELQRKKSEAELLREKAGRLEAELAELREALASC 106
>gnl|CDD|223587 COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication,
recombination, and repair / Transcription / Translation,
ribosomal structure and biogenesis].
Length = 513
Score = 34.0 bits (78), Expect = 0.77
Identities = 9/84 (10%), Positives = 17/84 (20%), Gaps = 14/84 (16%)
Query: 1575 RREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKK------KKKKKKKKKKKKKKKKKK 1628
E + KK K KK + + K + +++
Sbjct: 422 EEESDISDEIKKLKSSKKALLRGLGVRFTLSKLLANLGKEIPGAGDAVTIDPELERRSPN 481
Query: 1629 KKKK--------KYSREGGGGGEK 1644
Y E +
Sbjct: 482 SADDIEYILKGLSYRAEERTAKNE 505
>gnl|CDD|235516 PRK05582, PRK05582, DNA topoisomerase I; Validated.
Length = 650
Score = 34.0 bits (79), Expect = 0.79
Identities = 18/57 (31%), Positives = 29/57 (50%)
Query: 1577 EGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
+ +K KKK + K KK + K ++ K+ + KKK K K KKK++K+
Sbjct: 194 DAEFKKGKKKFEASFYGYKGKKIELKNEEDVKEILAELKKKDFKVSKVKKKERKRNP 250
Score = 30.6 bits (70), Expect = 9.5
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Query: 1587 KKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKK----KKKKKKKKKKY 1634
KK KKK + K KK + K ++ K+ + KKK K KKK++K+
Sbjct: 198 KKGKKKFEASFYGYKGKKIELKNEEDVKEILAELKKKDFKVSKVKKKERKRN 249
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication,
recombination, and repair].
Length = 908
Score = 34.0 bits (78), Expect = 0.80
Identities = 22/132 (16%), Positives = 67/132 (50%), Gaps = 1/132 (0%)
Query: 1506 ELIRYNRLTVIIKKSLQEVRQAVKGLIVMSKELEEINTSIMFGKIPQAWASKSYPSLKPL 1565
EL+ RL K+ L+E+R+ +K L KELEE + + + S++ L+
Sbjct: 573 ELLEELRLLRTRKEELEELRERLKELKKKLKELEERLSQLE-ELLQSLELSEAENELEEA 631
Query: 1566 GSYIVDLLARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKK 1625
+ L + + E ++ + ++ ++K ++ + + ++ ++ + +++ ++K ++ +
Sbjct: 632 EEELESELEKLNLQAELEELLQAALEELEEKVEELEAEIRRELQRIENEEQLEEKLEELE 691
Query: 1626 KKKKKKKKYSRE 1637
+ +++ ++ E
Sbjct: 692 QLEEELEQLREE 703
Score = 33.6 bits (77), Expect = 1.1
Identities = 16/131 (12%), Positives = 51/131 (38%), Gaps = 1/131 (0%)
Query: 1503 LKQELIRYNRLTVIIKKSLQEVRQAVKGLIVMSKELEEINTSIMFGKIPQAWASKSYPSL 1562
L++ + + L + +++EE+ I ++ + +
Sbjct: 628 LEEAEEELESELEKLNLQAELEELLQAALEELEEKVEELEAEIR-RELQRIENEEQLEEK 686
Query: 1563 KPLGSYIVDLLARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKK 1622
+ + L + E+ KK + ++ ++ + +K + ++ KK+ +K +K + +
Sbjct: 687 LEELEQLEEELEQLREELEELLKKLGEIEQLIEELESRKAELEELKKELEKLEKALELLE 746
Query: 1623 KKKKKKKKKKK 1633
+ ++K K
Sbjct: 747 ELREKLGKAGL 757
Score = 32.0 bits (73), Expect = 3.5
Identities = 17/71 (23%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Query: 758 KKAKLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQI---ELC 814
++ + E E ++E+L +L + +L+ L +L + + +ELE + E
Sbjct: 672 RELQRIENEEQLEEKLEELEQLEEELEQLREELEELLKKLGEIEQLIEELESRKAELEEL 731
Query: 815 KQKLERAEKLI 825
K++LE+ EK +
Sbjct: 732 KKELEKLEKAL 742
Score = 31.7 bits (72), Expect = 3.9
Identities = 19/81 (23%), Positives = 33/81 (40%)
Query: 748 YDRVIKIVGPKKAKLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKEL 807
+ + E + +E+L K +L + +++ L +EL +EL
Sbjct: 258 LLEIESLELEALKIREEELRELERLLEELEEKIERLEELEREIEELEEELEGLRALLEEL 317
Query: 808 EDQIELCKQKLERAEKLIGGL 828
E+ +E K ER EKL L
Sbjct: 318 EELLEKLKSLEERLEKLEEKL 338
>gnl|CDD|215329 PLN02610, PLN02610, probable methionyl-tRNA synthetase.
Length = 801
Score = 34.0 bits (78), Expect = 0.84
Identities = 17/46 (36%), Positives = 20/46 (43%)
Query: 1571 DLLARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKK 1616
D AR E KK K+ KKK KKK+ KK K K +
Sbjct: 590 DRAARAEAAEAKKLAKQLKKKALSDGGKKKQGKKAGGGGKSKAAAE 635
Score = 32.8 bits (75), Expect = 2.0
Identities = 16/47 (34%), Positives = 20/47 (42%)
Query: 1574 ARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKK 1620
A R R E + KK K+ KKK KKK+ K K K +
Sbjct: 589 ADRAARAEAAEAKKLAKQLKKKALSDGGKKKQGKKAGGGGKSKAAAE 635
>gnl|CDD|224259 COG1340, COG1340, Uncharacterized archaeal coiled-coil protein
[Function unknown].
Length = 294
Score = 33.5 bits (77), Expect = 0.85
Identities = 11/67 (16%), Positives = 39/67 (58%)
Query: 1574 ARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
+R+ K ++ ++K ++ ++++ + ++ ++ K+K+ + K ++ +K+ ++ K+K+
Sbjct: 41 EKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQELRKEYRELKEKRN 100
Query: 1634 YSREGGG 1640
GG
Sbjct: 101 EFNLGGR 107
Score = 32.3 bits (74), Expect = 2.0
Identities = 14/64 (21%), Positives = 39/64 (60%)
Query: 1569 IVDLLARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKK 1628
V+L + + E+ + + + ++ +KK K + K+K K+++K+++ K++ ++ +K K
Sbjct: 216 FVELSKKIDELHEEFRNLQNELRELEKKIKALRAKEKAAKRREKREELKERAEEIYEKFK 275
Query: 1629 KKKK 1632
+ +K
Sbjct: 276 RGEK 279
Score = 32.0 bits (73), Expect = 2.3
Identities = 12/63 (19%), Positives = 35/63 (55%)
Query: 1571 DLLARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKK 1630
+L + E+ + KK + ++ + + + ++ +KK K + K+K K+++K+++
Sbjct: 204 ELRKEADELHEEFVELSKKIDELHEEFRNLQNELRELEKKIKALRAKEKAAKRREKREEL 263
Query: 1631 KKK 1633
K++
Sbjct: 264 KER 266
Score = 32.0 bits (73), Expect = 2.8
Identities = 11/58 (18%), Positives = 35/58 (60%)
Query: 1579 RGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSR 1636
+K + ++ + + + ++ +KK K + K+K K+++K+++ K++ ++ +K+ R
Sbjct: 219 LSKKIDELHEEFRNLQNELRELEKKIKALRAKEKAAKRREKREELKERAEEIYEKFKR 276
Score = 31.2 bits (71), Expect = 4.0
Identities = 12/56 (21%), Positives = 34/56 (60%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSR 1636
E KK + ++ + + + ++ +KK K + K+K K+++K+++ K++ ++ Y +
Sbjct: 218 ELSKKIDELHEEFRNLQNELRELEKKIKALRAKEKAAKRREKREELKERAEEIYEK 273
Score = 30.8 bits (70), Expect = 5.7
Identities = 14/57 (24%), Positives = 35/57 (61%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSRE 1637
E++++ +K K+ +K+ + KK ++ +K K+ K + + KKK ++ +K ++ + E
Sbjct: 131 EEERELVQKIKELRKELEDAKKALEENEKLKELKAEIDELKKKAREIHEKIQELANE 187
>gnl|CDD|217318 pfam03011, PFEMP, PFEMP DBL domain. PfEMP1 (Plasmodium falciparum
erythrocyte membrane protein) has been identified as the
rosetting ligand of the malaria parasite P. falciparum.
Rosetting is the adhesion of infected erythrocytes with
uninfected erythrocytes in the vasculature of the
infected organ, and is associated with severe malaria.
PfEMP1 interacts with Complement Receptor One on
uninfected erythrocytes to form rosettes.
Length = 150
Score = 32.3 bits (74), Expect = 0.86
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Query: 1582 KKKKKKKKKKKKKKKKKKKKKKK----KKYKKKKKKKKKKKKKKKKKKKKKKKKKKYS 1635
+KK K K K K KKK +K+ +KKKK+ +K K+ K+ K +
Sbjct: 17 RKKLKHCINNGKGKCCKCICKKKCECVEKWIEKKKKEWEKIKEHFNKQYKIDDGRDEY 74
>gnl|CDD|236768 PRK10819, PRK10819, transport protein TonB; Provisional.
Length = 246
Score = 33.1 bits (76), Expect = 0.89
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 1597 KKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKK 1631
K + K K K K K K KK +++ K++ K + +
Sbjct: 93 PKPEPKPKPKPKPKPKPVKKVEEQPKREVKPVEPR 127
Score = 33.1 bits (76), Expect = 0.95
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 1599 KKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
K + K K K K K K KK +++ K++ K + +
Sbjct: 93 PKPEPKPKPKPKPKPKPVKKVEEQPKREVKPVEPR 127
Score = 33.1 bits (76), Expect = 1.1
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKK 1625
E K+ K + K K K K K K KK +++ K++ K + +
Sbjct: 83 EPPKEAPVVIPKPEPKPKPKPKPKPKPVKKVEEQPKREVKPVEPR 127
Score = 33.1 bits (76), Expect = 1.1
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 1593 KKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKK 1627
K + K K K K K K KK +++ K++ K + +
Sbjct: 93 PKPEPKPKPKPKPKPKPVKKVEEQPKREVKPVEPR 127
Score = 31.6 bits (72), Expect = 3.2
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 1595 KKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKK 1629
K + K K K K K K KK +++ K++ K + +
Sbjct: 93 PKPEPKPKPKPKPKPKPVKKVEEQPKREVKPVEPR 127
Score = 30.8 bits (70), Expect = 5.4
Identities = 10/35 (28%), Positives = 18/35 (51%)
Query: 1598 KKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKK 1632
K + K K K K K KK +++ K++ K + +
Sbjct: 93 PKPEPKPKPKPKPKPKPVKKVEEQPKREVKPVEPR 127
>gnl|CDD|153331 cd07647, F-BAR_PSTPIP, The F-BAR (FES-CIP4 Homology and
Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine
Phosphatase-Interacting Proteins. F-BAR domains are
dimerization modules that bind and bend membranes and are
found in proteins involved in membrane dynamics and actin
reorganization. Vetebrates contain two
Proline-Serine-Threonine Phosphatase-Interacting Proteins
(PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly
expressed in hematopoietic cells and are involved in the
regulation of cell adhesion and motility. Mutations in
PSTPIPs have been shown to cause autoinflammatory
disorders. PSTPIP1 contains an N-terminal F-BAR domain,
PEST motifs, and a C-terminal SH3 domain, while PSTPIP2
contains only the N-terminal F-BAR domain. F-BAR domains
form banana-shaped dimers with a positively-charged
concave surface that binds to negatively-charged lipid
membranes. They can induce membrane deformation in the
form of long tubules.
Length = 239
Score = 33.2 bits (76), Expect = 0.89
Identities = 23/75 (30%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 1576 REGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYS 1635
+ ++K+K+++KK + K+ +K KK+ YKK K KK ++K ++K K ++ +K S
Sbjct: 88 EKLEEFREKQKEERKKTEDIMKRSQKNKKELYKKTMKAKKSYEQKCREKDKAEQAYEK-S 146
Query: 1636 REGGGGGEKELVQKN 1650
G E E ++K
Sbjct: 147 SSGAQPKEAEKLKKK 161
>gnl|CDD|177283 PHA00451, PHA00451, protein kinase.
Length = 362
Score = 33.6 bits (77), Expect = 0.96
Identities = 8/46 (17%), Positives = 24/46 (52%)
Query: 1574 ARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKK 1619
A+R+ G + +K K++K+ +K + + K+ + + + ++
Sbjct: 254 AKRDPNGTFQVARKAAMKRRKRNRKLRARNAKELAAMRMEANQIRR 299
>gnl|CDD|216447 pfam01346, FKBP_N, Domain amino terminal to FKBP-type peptidyl-prolyl
isomerase. This family is only found at the amino
terminus of pfam00254. This domain is of unknown
function.
Length = 124
Score = 31.8 bits (73), Expect = 1.0
Identities = 9/33 (27%), Positives = 19/33 (57%)
Query: 1583 KKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKK 1615
KK + K++ K +KK ++ K + + + KK+
Sbjct: 79 KKLQAKQQAKAEKKAEENKAAGEAFLAENAKKE 111
>gnl|CDD|214922 smart00935, OmpH, Outer membrane protein (OmpH-like). This family
includes outer membrane proteins such as OmpH among
others. Skp (OmpH) has been characterized as a molecular
chaperone that interacts with unfolded proteins as they
emerge in the periplasm from the Sec translocation
machinery.
Length = 140
Score = 32.2 bits (74), Expect = 1.0
Identities = 16/61 (26%), Positives = 40/61 (65%), Gaps = 6/61 (9%)
Query: 1583 KKKKKKKKKKKKKKKKKKKKKKKKYKKKK------KKKKKKKKKKKKKKKKKKKKKKYSR 1636
+K+ KK++ + +K +K+ +K K+K +K ++KK+K+ +KK ++ ++K++K +
Sbjct: 24 EKEFKKRQAELEKLEKELQKLKEKLQKDAATLSEAAREKKEKELQKKVQEFQRKQQKLQQ 83
Query: 1637 E 1637
+
Sbjct: 84 D 84
Score = 31.8 bits (73), Expect = 1.2
Identities = 14/50 (28%), Positives = 32/50 (64%)
Query: 1583 KKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKK 1632
K +K+ +K+ KK++ + +K +K+ +K K+K +K + ++KK+K+
Sbjct: 17 KAAQKQLEKEFKKRQAELEKLEKELQKLKEKLQKDAATLSEAAREKKEKE 66
Score = 30.6 bits (70), Expect = 3.3
Identities = 15/57 (26%), Positives = 35/57 (61%)
Query: 1577 EGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
G+ +K+ +K+ KK++ + +K +K+ +K +K +K + ++KK+K+ +KK
Sbjct: 15 AGKAAQKQLEKEFKKRQAELEKLEKELQKLKEKLQKDAATLSEAAREKKEKELQKKV 71
>gnl|CDD|218684 pfam05672, MAP7, MAP7 (E-MAP-115) family. The organisation of
microtubules varies with the cell type and is presumably
controlled by tissue-specific microtubule-associated
proteins (MAPs). The 115-kDa epithelial MAP
(E-MAP-115/MAP7) has been identified as a
microtubule-stabilising protein predominantly expressed
in cell lines of epithelial origin. The binding of this
microtubule associated protein is nucleotide independent.
Length = 171
Score = 32.4 bits (73), Expect = 1.0
Identities = 13/77 (16%), Positives = 52/77 (67%)
Query: 1573 LARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKK 1632
AR + E++++++++++ + ++++ K++ ++ +++++ +++++++ ++K++K K+K
Sbjct: 34 QAREQREQEEQERREQEEQDRLEREELKRRAAEERLRREEEARRQEEERAREKEEKAKRK 93
Query: 1633 KYSREGGGGGEKELVQK 1649
E E+E +QK
Sbjct: 94 AEEEEKQEQEEQERIQK 110
Score = 30.4 bits (68), Expect = 4.7
Identities = 11/58 (18%), Positives = 44/58 (75%)
Query: 1574 ARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKK 1631
ARR+ ++K++K K+K ++++K++++++++ +K+K++ + + +++ ++ + +++K
Sbjct: 75 ARRQEEERAREKEEKAKRKAEEEEKQEQEEQERIQKQKEEAEARAREEAERMRLEREK 132
Score = 30.4 bits (68), Expect = 5.2
Identities = 9/59 (15%), Positives = 47/59 (79%)
Query: 1579 RGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSRE 1637
R +++ +++++ +++++++ ++K++K +K ++++K++++++++ +K+K++ + +RE
Sbjct: 63 RAAEERLRREEEARRQEEERAREKEEKAKRKAEEEEKQEQEEQERIQKQKEEAEARARE 121
Score = 30.1 bits (67), Expect = 6.5
Identities = 12/64 (18%), Positives = 47/64 (73%), Gaps = 1/64 (1%)
Query: 1574 ARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
RRE +++++++ ++K++K K+K ++++K+ ++++++ +K+K++ + + +++ ++ +
Sbjct: 69 LRREEEA-RRQEEERAREKEEKAKRKAEEEEKQEQEEQERIQKQKEEAEARAREEAERMR 127
Query: 1634 YSRE 1637
RE
Sbjct: 128 LERE 131
>gnl|CDD|221161 pfam11661, DUF2986, Protein of unknown function (DUF2986). This
family of proteins has no known function.
Length = 44
Score = 29.6 bits (67), Expect = 1.0
Identities = 13/27 (48%), Positives = 14/27 (51%)
Query: 1608 KKKKKKKKKKKKKKKKKKKKKKKKKKY 1634
KKK +K KKK KK K K KY
Sbjct: 4 KKKINQKLKKKAKKANAKLHPSNKPKY 30
Score = 28.8 bits (65), Expect = 2.3
Identities = 12/27 (44%), Positives = 14/27 (51%)
Query: 1599 KKKKKKKKYKKKKKKKKKKKKKKKKKK 1625
+KKK +K KKK KK K K K
Sbjct: 3 RKKKINQKLKKKAKKANAKLHPSNKPK 29
Score = 28.4 bits (64), Expect = 2.8
Identities = 14/35 (40%), Positives = 16/35 (45%)
Query: 1603 KKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSRE 1637
+KKK +K KKK KK K K K K R
Sbjct: 3 RKKKINQKLKKKAKKANAKLHPSNKPKYISKAERA 37
Score = 27.6 bits (62), Expect = 5.5
Identities = 13/29 (44%), Positives = 14/29 (48%)
Query: 1582 KKKKKKKKKKKKKKKKKKKKKKKKKYKKK 1610
KK +K KKK KK K K KY K
Sbjct: 5 KKINQKLKKKAKKANAKLHPSNKPKYISK 33
Score = 27.2 bits (61), Expect = 7.9
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 1587 KKKKKKKKKKKKKKKKKKKKYKKKKKK 1613
+KKK +K KKK KK K + K K
Sbjct: 3 RKKKINQKLKKKAKKANAKLHPSNKPK 29
Score = 26.9 bits (60), Expect = 8.9
Identities = 12/27 (44%), Positives = 14/27 (51%)
Query: 1595 KKKKKKKKKKKKYKKKKKKKKKKKKKK 1621
+KKK +K KKK KK K K K
Sbjct: 3 RKKKINQKLKKKAKKANAKLHPSNKPK 29
>gnl|CDD|223095 COG0016, PheS, Phenylalanyl-tRNA synthetase alpha subunit
[Translation, ribosomal structure and biogenesis].
Length = 335
Score = 33.4 bits (77), Expect = 1.1
Identities = 9/66 (13%), Positives = 24/66 (36%), Gaps = 6/66 (9%)
Query: 1575 RREGRGEKKK-KKKKKKKKKKKKKKKKKKKKKKYKKKKKK-----KKKKKKKKKKKKKKK 1628
+ + G+K KK K +++K+ + KK+ + + + ++
Sbjct: 31 KVKYLGKKGVLTDLLKKLGKLSPLEERKEVGALINELKKEVEDAITELTPELEAAGLWER 90
Query: 1629 KKKKKY 1634
+K
Sbjct: 91 LAFEKI 96
>gnl|CDD|235202 PRK04023, PRK04023, DNA polymerase II large subunit; Validated.
Length = 1121
Score = 33.7 bits (78), Expect = 1.1
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 6/48 (12%)
Query: 1596 KKKKKKKKKKKYKK------KKKKKKKKKKKKKKKKKKKKKKKKYSRE 1637
K K K K K ++ KK+K+++++KKK K K KY R+
Sbjct: 252 KAPKILKYVDKLKIDGWEWLEELISGKKEKEEEEEKKKIKPKDKYLRD 299
>gnl|CDD|217011 pfam02388, FemAB, FemAB family. The femAB operon codes for two
nearly identical approximately 50-kDa proteins involved
in the formation of the Staphylococcal pentaglycine
interpeptide bridge in peptidoglycan. These proteins are
also considered as a factor influencing the level of
methicillin resistance.
Length = 408
Score = 33.4 bits (77), Expect = 1.1
Identities = 18/71 (25%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 757 PKKAKLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKK--ELEDQIELC 814
KA+ A ++ +++L K +L L KL+ ++ K K ELE Q+
Sbjct: 228 GDKAEFMLAYLNFKEYLDELQEKLEKLEKDLAKLEEKLEKNPNSKKKNKLAELEQQLASL 287
Query: 815 KQKLERAEKLI 825
+++++ A++LI
Sbjct: 288 EKRIDEAKELI 298
>gnl|CDD|205692 pfam13514, AAA_27, AAA domain. This domain is found in a number of
double-strand DNA break proteins. This domain contains a
P-loop motif.
Length = 1118
Score = 33.6 bits (77), Expect = 1.1
Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 5/87 (5%)
Query: 765 AEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELE--DQIELCKQKL---E 819
A Y +L + R L + +L+AL+ EL + S D++ L IE Q+
Sbjct: 240 AVERYEEARAELRAARRNLELLTERLEALQAELDEISLDEELLAQAAAIEALHQQRGEYR 299
Query: 820 RAEKLIGGLGGEKTRWSEASANLSKAL 846
AE+ + GE EA+A L +
Sbjct: 300 NAEQDLPDREGEIANAREAAAALLAQI 326
Score = 30.9 bits (70), Expect = 6.9
Identities = 13/56 (23%), Positives = 26/56 (46%)
Query: 783 LATVLGKLQALRDELAQKSKDKKELEDQIELCKQKLERAEKLIGGLGGEKTRWSEA 838
LA +L + L +E +++ K L++++ ++ LE AE+ W E
Sbjct: 661 LAELLELARQLLEEAEKQAARKASLDERLRDAERALEEAEERHDEAQSALEAWQEQ 716
>gnl|CDD|220684 pfam10310, DUF2413, Protein of unknown function (DUF2413). This is a
family of proteins conserved in fungi. The function is
not known.
Length = 436
Score = 33.2 bits (76), Expect = 1.1
Identities = 17/83 (20%), Positives = 27/83 (32%), Gaps = 9/83 (10%)
Query: 1572 LLARREGRGEKKKKKKKKKKKKKKKKKKKKKKK---------KKYKKKKKKKKKKKKKKK 1622
+L + ++K KK KK K + + + K K KK K+ +
Sbjct: 1 VLEFLDSLPDEKAPTKKPKKGDASKDSTEDDEDILEFLDELEQSEKAKPPKKPKEASRPG 60
Query: 1623 KKKKKKKKKKKYSREGGGGGEKE 1645
+ KK K EK
Sbjct: 61 TPRNPKKSSKPTESSAASSEEKP 83
Score = 33.2 bits (76), Expect = 1.4
Identities = 12/50 (24%), Positives = 21/50 (42%)
Query: 1586 KKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYS 1635
+ +K K KK K+ + + KK K + ++K K +K S
Sbjct: 43 QSEKAKPPKKPKEASRPGTPRNPKKSSKPTESSAASSEEKPAKPRKSAES 92
Score = 32.1 bits (73), Expect = 3.1
Identities = 13/60 (21%), Positives = 25/60 (41%)
Query: 1571 DLLARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKK 1630
D+L + + +K K KK K+ + + KK K + ++K K +K +
Sbjct: 33 DILEFLDELEQSEKAKPPKKPKEASRPGTPRNPKKSSKPTESSAASSEEKPAKPRKSAES 92
Score = 31.3 bits (71), Expect = 5.1
Identities = 12/51 (23%), Positives = 22/51 (43%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKK 1631
E+ +K K KK K+ + + KK K + ++K K +K +
Sbjct: 42 EQSEKAKPPKKPKEASRPGTPRNPKKSSKPTESSAASSEEKPAKPRKSAES 92
>gnl|CDD|235943 PRK07133, PRK07133, DNA polymerase III subunits gamma and tau;
Validated.
Length = 725
Score = 33.6 bits (77), Expect = 1.1
Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 3/55 (5%)
Query: 1582 KKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKK---KKKKKKK 1633
KK + K K KK K +K KK +K K+ +K+ K KKK
Sbjct: 671 KKLINEAKIYWKAINNTKKSVVIKPLEKPKKYEKTSVSKENLEKEIFGDKFTKKK 725
Score = 33.3 bits (76), Expect = 1.5
Identities = 17/50 (34%), Positives = 22/50 (44%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKK 1630
E K K KK K +K KKY+K K+ +K+ K KKK
Sbjct: 676 EAKIYWKAINNTKKSVVIKPLEKPKKYEKTSVSKENLEKEIFGDKFTKKK 725
Score = 30.9 bits (70), Expect = 7.7
Identities = 16/55 (29%), Positives = 22/55 (40%), Gaps = 3/55 (5%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKK---KKKKKKK 1632
+K + K K KK K K KK +K K+ +K+ K KKK
Sbjct: 671 KKLINEAKIYWKAINNTKKSVVIKPLEKPKKYEKTSVSKENLEKEIFGDKFTKKK 725
>gnl|CDD|236295 PRK08570, rpl19e, 50S ribosomal protein L19e; Reviewed.
Length = 150
Score = 32.1 bits (74), Expect = 1.2
Identities = 15/58 (25%), Positives = 32/58 (55%), Gaps = 5/58 (8%)
Query: 1585 KKKKKK-----KKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSRE 1637
K K KK + +++ +K+KK +++ +K KK + KK++ + + ++Y RE
Sbjct: 51 KAKPKKGISRGRARERHEKRKKGRRRGPGSRKGKKGARTPKKERWINRIRALRRYLRE 108
Score = 30.2 bits (69), Expect = 4.6
Identities = 12/58 (20%), Positives = 31/58 (53%)
Query: 1579 RGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSR 1636
RG +++ +K+KK +++ +K KK KK++ + + ++ ++ + + K R
Sbjct: 60 RGRARERHEKRKKGRRRGPGSRKGKKGARTPKKERWINRIRALRRYLRELRDEGKIDR 117
>gnl|CDD|201967 pfam01778, Ribosomal_L28e, Ribosomal L28e protein family.
Length = 114
Score = 31.4 bits (72), Expect = 1.2
Identities = 15/52 (28%), Positives = 23/52 (44%)
Query: 1585 KKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSR 1636
KK K+ K K +K K +K K+ KK + KK K++ S+
Sbjct: 58 VTKKPKRAHKPAKLWEKVTLSKNYRKALKQIKKALAYYRPDLIKKAKRRASK 109
>gnl|CDD|236080 PRK07734, motB, flagellar motor protein MotB; Reviewed.
Length = 259
Score = 32.8 bits (75), Expect = 1.2
Identities = 15/54 (27%), Positives = 30/54 (55%)
Query: 1585 KKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREG 1638
+ ++ KKK++ + KKKK+ ++ K +KK + K+K+ + K + EG
Sbjct: 82 ASSLEAEQAKKKEEAEAKKKKEMEELKAVQKKIDQYIKEKQLSSSLQTKLTEEG 135
Score = 32.0 bits (73), Expect = 2.1
Identities = 14/48 (29%), Positives = 29/48 (60%)
Query: 1590 KKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSRE 1637
K + +K+ + ++ KKK++ + KKKK+ ++ K +KK +Y +E
Sbjct: 73 KPEDEKELSASSLEAEQAKKKEEAEAKKKKEMEELKAVQKKIDQYIKE 120
Score = 30.9 bits (70), Expect = 4.7
Identities = 13/51 (25%), Positives = 27/51 (52%)
Query: 1580 GEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKK 1630
+ ++ KKK++ + KKKK+ ++ K +KK + K+K+ + K
Sbjct: 80 LSASSLEAEQAKKKEEAEAKKKKEMEELKAVQKKIDQYIKEKQLSSSLQTK 130
>gnl|CDD|217803 pfam03938, OmpH, Outer membrane protein (OmpH-like). This family
includes outer membrane proteins such as OmpH among
others. Skp (OmpH) has been characterized as a molecular
chaperone that interacts with unfolded proteins as they
emerge in the periplasm from the Sec translocation
machinery.
Length = 157
Score = 31.8 bits (73), Expect = 1.2
Identities = 12/50 (24%), Positives = 36/50 (72%)
Query: 1583 KKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKK 1632
+K+ KK + + +KK+K+ +K+++K +K+ ++ +K K+++ ++K+++
Sbjct: 41 EKEFKKLQAELQKKEKELQKEEQKLQKQAATLSEEARKAKQQELQQKQQE 90
>gnl|CDD|233042 TIGR00598, rad14, DNA repair protein. All proteins in this family
for which functions are known are used for the
recognition of DNA damage as part of nucleotide excision
repair. This family is based on the phylogenomic analysis
of JA Eisen (1999, Ph.D. Thesis, Stanford University)
[DNA metabolism, DNA replication, recombination, and
repair].
Length = 172
Score = 32.1 bits (73), Expect = 1.2
Identities = 14/45 (31%), Positives = 26/45 (57%)
Query: 1571 DLLARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKK 1615
L +E R E K++ K+KK +KK K+ ++ + +Y KK+ +
Sbjct: 95 ALDEEKERREESKEEMKEKKFEKKLKELRRAVRSSEYTNKKEGRV 139
>gnl|CDD|218370 pfam04997, RNA_pol_Rpb1_1, RNA polymerase Rpb1, domain 1. RNA
polymerases catalyze the DNA dependent polymerisation of
RNA. Prokaryotes contain a single RNA polymerase compared
to three in eukaryotes (not including mitochondrial. and
chloroplast polymerases). This domain, domain 1,
represents the clamp domain, which a mobile domain
involved in positioning the DNA, maintenance of the
transcription bubble and positioning of the nascent RNA
strand.
Length = 330
Score = 33.0 bits (76), Expect = 1.3
Identities = 18/64 (28%), Positives = 24/64 (37%), Gaps = 5/64 (7%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKK-----KKKKKKKKKKKKYS 1635
E K K K K KK+ KK KKK K + K + K + K S
Sbjct: 107 ESVKYFFLKVVIDPKGKNSKKRLKKINNLCKKKSICSKCGEDNGGLKAFEGCGKYQPKIS 166
Query: 1636 REGG 1639
++G
Sbjct: 167 KDGA 170
>gnl|CDD|217010 pfam02387, IncFII_repA, IncFII RepA protein family. This protein is
plasmid encoded and found to be essential for plasmid
replication.
Length = 279
Score = 32.7 bits (75), Expect = 1.3
Identities = 14/69 (20%), Positives = 35/69 (50%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGG 1640
+K++ + + KK KKK + ++ K+ ++ + ++K KK++ +R+
Sbjct: 171 ARKQQLEWENKKLKKKGLIPLTLDEARRRAKEFHIERAFSYRTERKAFGKKRRRARKLAK 230
Query: 1641 GGEKELVQK 1649
EK++ +K
Sbjct: 231 LDEKDIRKK 239
Score = 30.8 bits (70), Expect = 5.2
Identities = 17/72 (23%), Positives = 35/72 (48%), Gaps = 9/72 (12%)
Query: 1574 ARREGRGEKKKKKKKKKKK-------KKKKKKKKKKKKKKYKKKKKKKKKKKKKKKK--K 1624
AR++ + KK KKK +++ K+ ++ Y+ ++K KK+++ +K K
Sbjct: 171 ARKQQLEWENKKLKKKGLIPLTLDEARRRAKEFHIERAFSYRTERKAFGKKRRRARKLAK 230
Query: 1625 KKKKKKKKKYSR 1636
+K +KK
Sbjct: 231 LDEKDIRKKILN 242
>gnl|CDD|217888 pfam04091, Sec15, Exocyst complex subunit Sec15-like.
Length = 311
Score = 33.0 bits (76), Expect = 1.4
Identities = 27/110 (24%), Positives = 44/110 (40%), Gaps = 15/110 (13%)
Query: 185 LEDLNASPLVYDEI--DNLD-LLTEKINQYIVDYNTQNSNKPIDIVTFL----------- 230
L+DL P +EI +LD LL + +N +++ S IV L
Sbjct: 51 LDDLYQEPTEINEIVRKSLDRLLIDVVNDCLLERLDSTSLNLEQIVQILINLEYFEKACD 110
Query: 231 YIIQHISRLCRILQQPKGHAMLITIGTYRVERKIALGRVHIIRTEKEIDD 280
+ + +++L I Q G L ++ RK A R+ +IDD
Sbjct: 111 ELEKLLAQLRNIPQSIGGPISLAATKKFKSARKAAEKRI-FELVNSKIDD 159
>gnl|CDD|205286 pfam13105, DUF3959, Protein of unknown function (DUF3959). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria. Proteins in this
family are approximately 260 amino acids in length.
Length = 242
Score = 32.5 bits (74), Expect = 1.4
Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
Query: 1572 LLARREGRGEKKKKKKKK---KKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKK 1628
LLA R EK K+ K+KKK+KK K + + K K K K +K K +
Sbjct: 145 LLANLIHRKEKDDNKENINLFKQKKKRKKLSFKIRLPRLPKLKMKLFKFGRKPSNSKDPR 204
Query: 1629 KKKKKY 1634
K + Y
Sbjct: 205 KYEHNY 210
>gnl|CDD|205206 pfam13025, DUF3886, Protein of unknown function (DUF3886). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria. Proteins in this
family are approximately 90 amino acids in length. There
are two completely conserved L residues that may be
functionally important.
Length = 70
Score = 30.0 bits (68), Expect = 1.5
Identities = 11/37 (29%), Positives = 29/37 (78%)
Query: 1597 KKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
K K KKK+ K +++K++++++ +K++++K+++K K
Sbjct: 19 LAKLKAKKKELKAEEEKREEEEEARKREERKEREKNK 55
Score = 28.8 bits (65), Expect = 3.9
Identities = 11/36 (30%), Positives = 28/36 (77%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKK 1616
K K KKK+ K +++K++++++ +K+ ++K+++K K
Sbjct: 20 AKLKAKKKELKAEEEKREEEEEARKREERKEREKNK 55
Score = 27.7 bits (62), Expect = 9.5
Identities = 11/37 (29%), Positives = 29/37 (78%)
Query: 1584 KKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKK 1620
K K KKK+ K +++K++++++ +K++++K+++K K
Sbjct: 19 LAKLKAKKKELKAEEEKREEEEEARKREERKEREKNK 55
>gnl|CDD|200948 pfam00038, Filament, Intermediate filament protein.
Length = 312
Score = 32.6 bits (75), Expect = 1.5
Identities = 14/50 (28%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Query: 760 AKLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELED 809
+LAE E Y +++ ++L +LQ L+ E+A++ ++ +EL D
Sbjct: 244 RQLAELEERYELELADYQDTISELEE---ELQQLKAEMARQLREYQELLD 290
>gnl|CDD|221893 pfam13010, pRN1_helical, Primase helical domain. This alpha helical
domain is found in a set of bacterial plasmid replication
proteins. The domain is found to the C-terminus of the
primase/polymerase domain. Mutants of this domain are
defective in template binding, dinucleotide formation and
conformation change prior to DNA extension.
Length = 135
Score = 31.3 bits (71), Expect = 1.5
Identities = 15/54 (27%), Positives = 31/54 (57%)
Query: 1580 GEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
KK+++ ++ +K K++ K + K K + +++ KK KK ++ K+KKK
Sbjct: 1 EGKKEEEDSEEDFEKLKEEMAKYDRFKGKTVEAIREEVCKKIKKSLEELKEKKK 54
Score = 30.9 bits (70), Expect = 2.5
Identities = 16/54 (29%), Positives = 32/54 (59%)
Query: 1577 EGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKK 1630
EG+ E++ ++ +K K++ K + K K + +++ KK KK ++ K+KKK
Sbjct: 1 EGKKEEEDSEEDFEKLKEEMAKYDRFKGKTVEAIREEVCKKIKKSLEELKEKKK 54
Score = 29.8 bits (67), Expect = 6.2
Identities = 15/55 (27%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
Query: 1584 KKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKK----KKKKKKKKKKKKKKKKKY 1634
KK+++ ++ +K K++ K ++K K + + KK KK ++ K+KKK
Sbjct: 3 KKEEEDSEEDFEKLKEEMAKYDRFKGKTVEAIREEVCKKIKKSLEELKEKKKAIL 57
>gnl|CDD|144972 pfam01576, Myosin_tail_1, Myosin tail. The myosin molecule is a
multi-subunit complex made up of two heavy chains and
four light chains it is a fundamental contractile
protein found in all eukaryote cell types. This family
consists of the coiled-coil myosin heavy chain tail
region. The coiled-coil is composed of the tail from two
molecules of myosin. These can then assemble into the
macromolecular thick filament. The coiled-coil region
provides the structural backbone the thick filament.
Length = 859
Score = 33.1 bits (76), Expect = 1.5
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 5/66 (7%)
Query: 763 AEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKK-----ELEDQIELCKQK 817
+EA+A+ Q+ K N++ Q + ALR E ++ K K ELE+ E K
Sbjct: 284 SEAKAELERQLSKANAEIQQWRSKFESEGALRAEELEELKKKLNQKISELEEAAEAANAK 343
Query: 818 LERAEK 823
+ EK
Sbjct: 344 CDSLEK 349
>gnl|CDD|216568 pfam01555, N6_N4_Mtase, DNA methylase. Members of this family are
DNA methylases. The family contains both N-4
cytosine-specific DNA methylases and N-6 Adenine-specific
DNA methylases.
Length = 219
Score = 32.4 bits (74), Expect = 1.5
Identities = 9/52 (17%), Positives = 16/52 (30%)
Query: 1583 KKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKY 1634
K KK K +K K K + + K + + +K+
Sbjct: 106 KTKKYYTFNYDAIKVPYDEKDKLKKRGDSEPNGKPIGDVWDFPRVQPSEKES 157
Score = 32.0 bits (73), Expect = 2.0
Identities = 10/52 (19%), Positives = 16/52 (30%)
Query: 1582 KKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
K KK K +K K KK + K + + +K+
Sbjct: 106 KTKKYYTFNYDAIKVPYDEKDKLKKRGDSEPNGKPIGDVWDFPRVQPSEKES 157
Score = 30.0 bits (68), Expect = 7.4
Identities = 10/54 (18%), Positives = 14/54 (25%)
Query: 1591 KKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGGGGEK 1644
K KK K Y +K K KK+ + K +
Sbjct: 106 KTKKYYTFNYDAIKVPYDEKDKLKKRGDSEPNGKPIGDVWDFPRVQPSEKESGG 159
Score = 30.0 bits (68), Expect = 7.6
Identities = 11/53 (20%), Positives = 15/53 (28%)
Query: 1593 KKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGGGGEKE 1645
K KK K +K K KK+ + K + R E
Sbjct: 106 KTKKYYTFNYDAIKVPYDEKDKLKKRGDSEPNGKPIGDVWDFPRVQPSEKESG 158
>gnl|CDD|237803 PRK14724, PRK14724, DNA topoisomerase III; Provisional.
Length = 987
Score = 33.0 bits (75), Expect = 1.5
Identities = 26/91 (28%), Positives = 33/91 (36%), Gaps = 7/91 (7%)
Query: 1525 RQAVKGLIVMSKELEEINTSIMFGKIPQAWASKSYPSLKPLGSYIVDLLARREGRGEKKK 1584
R+A K + KE ++N F P+ SK +P K + A G K
Sbjct: 827 RRAFKAFLAWDKEAGKVN----FEFEPRE--SK-FPPRKTAAAKAGAASAAFGGTVAVKA 879
Query: 1585 KKKKKKKKKKKKKKKKKKKKKKYKKKKKKKK 1615
K KK KK K K K KKK
Sbjct: 880 AKPAKKAAAKKVAAKTAAAKTPRKAAKKKAA 910
Score = 33.0 bits (75), Expect = 1.7
Identities = 15/69 (21%), Positives = 19/69 (27%)
Query: 1573 LARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKK 1632
RE + +K K K KK KK K K +K K
Sbjct: 847 FEPRESKFPPRKTAAAKAGAASAAFGGTVAVKAAKPAKKAAAKKVAAKTAAAKTPRKAAK 906
Query: 1633 KYSREGGGG 1641
K + G
Sbjct: 907 KKAAPPAAG 915
Score = 32.2 bits (73), Expect = 3.3
Identities = 14/61 (22%), Positives = 16/61 (26%)
Query: 1584 KKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGGGGE 1643
+K K K K KK KK K K +K K G
Sbjct: 857 RKTAAAKAGAASAAFGGTVAVKAAKPAKKAAAKKVAAKTAAAKTPRKAAKKKAAPPAAGL 916
Query: 1644 K 1644
K
Sbjct: 917 K 917
>gnl|CDD|220357 pfam09716, ETRAMP, Malarial early transcribed membrane protein
(ETRAMP). These sequences represent a family of proteins
from the malaria parasite Plasmodium falciparum, several
of which have been shown to be expressed specifically in
the ring stage as well as the rodent parasite Plasmodium
yoelii. A homologue from Plasmodium chabaudi was
localized to the parasitophorous vacuole membrane.
Members have an initial hydrophobic, Phe/Tyr-rich,
stretch long enough to span the membrane, a highly
charged region rich in Lys, a second putative
transmembrane region and a second highly charged, low
complexity sequence region. Some members have up to 100
residues of additional C-terminal sequence. These genes
have been shown to be found in the sub-telomeric regions
of both Plasmodium falciparum and P. yoelii chromosomes.
Length = 82
Score = 30.3 bits (69), Expect = 1.6
Identities = 15/27 (55%), Positives = 16/27 (59%)
Query: 1580 GEKKKKKKKKKKKKKKKKKKKKKKKKK 1606
KKKK KK KK +KKKK KKK
Sbjct: 27 VVAKKKKLKKLKKIDDDLEKKKKNKKK 53
Score = 29.5 bits (67), Expect = 2.9
Identities = 15/29 (51%), Positives = 16/29 (55%)
Query: 1605 KKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
KKKK KK KK +KKKK KKK
Sbjct: 25 NNVVAKKKKLKKLKKIDDDLEKKKKNKKK 53
Score = 29.5 bits (67), Expect = 3.2
Identities = 15/25 (60%), Positives = 16/25 (64%)
Query: 1599 KKKKKKKKYKKKKKKKKKKKKKKKK 1623
KKKK KK KK +KKKK KKK
Sbjct: 29 AKKKKLKKLKKIDDDLEKKKKNKKK 53
Score = 28.8 bits (65), Expect = 5.6
Identities = 16/28 (57%), Positives = 17/28 (60%)
Query: 1608 KKKKKKKKKKKKKKKKKKKKKKKKKKYS 1635
KKKK KK KK +KKKK KKK S
Sbjct: 30 KKKKLKKLKKIDDDLEKKKKNKKKIIIS 57
Score = 28.8 bits (65), Expect = 5.8
Identities = 15/25 (60%), Positives = 16/25 (64%)
Query: 1592 KKKKKKKKKKKKKKKYKKKKKKKKK 1616
KKKK KK KK +KKKK KKK
Sbjct: 29 AKKKKLKKLKKIDDDLEKKKKNKKK 53
Score = 28.4 bits (64), Expect = 6.3
Identities = 15/25 (60%), Positives = 16/25 (64%)
Query: 1595 KKKKKKKKKKKKYKKKKKKKKKKKK 1619
KKKK KK KK +KKKK KKK
Sbjct: 29 AKKKKLKKLKKIDDDLEKKKKNKKK 53
Score = 28.4 bits (64), Expect = 7.6
Identities = 15/25 (60%), Positives = 16/25 (64%)
Query: 1596 KKKKKKKKKKKYKKKKKKKKKKKKK 1620
KKKK KK KK +KKKK KKK
Sbjct: 29 AKKKKLKKLKKIDDDLEKKKKNKKK 53
Score = 28.0 bits (63), Expect = 9.9
Identities = 15/25 (60%), Positives = 16/25 (64%)
Query: 1602 KKKKKYKKKKKKKKKKKKKKKKKKK 1626
KKKK KK KK +KKKK KKK
Sbjct: 29 AKKKKLKKLKKIDDDLEKKKKNKKK 53
>gnl|CDD|148511 pfam06936, Selenoprotein_S, Selenoprotein S (SelS). This family
consists of several mammalian selenoprotein S (SelS)
sequences. SelS is a plasma membrane protein and is
present in a variety of tissues and cell types. The
function of this family is unknown.
Length = 190
Score = 32.2 bits (73), Expect = 1.6
Identities = 20/81 (24%), Positives = 40/81 (49%), Gaps = 8/81 (9%)
Query: 1570 VDLLARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKK--------K 1621
DL A+ EK+K+ +++K+++K + + ++ K YK K ++ ++ K
Sbjct: 94 EDLDAKAAKFKEKQKQLEEEKRRQKIEMWDRMQEGKSYKVSAKLAQEATEETSSSSVLPK 153
Query: 1622 KKKKKKKKKKKKYSREGGGGG 1642
K +KK + Y+ G GG
Sbjct: 154 PKTEKKPLRSGGYNPLTGSGG 174
>gnl|CDD|130298 TIGR01231, lacC, tagatose-6-phosphate kinase. This enzyme is part
of the tagatose-6-phosphate pathway of lactose
degradation [Energy metabolism, Biosynthesis and
degradation of polysaccharides].
Length = 309
Score = 32.6 bits (74), Expect = 1.7
Identities = 38/175 (21%), Positives = 69/175 (39%), Gaps = 15/175 (8%)
Query: 821 AEKLIGGLGGEKTRWSEASANLSKALVNCIGDILICAGIITYLGAFTVDFRNDLIEQWKS 880
A +GG GE +++ A G+ C I+ + +++EQ
Sbjct: 54 ASGFLGGKLGEFIEKELDHSDIKHAFYKISGETRNCIAILHE------GQQTEILEQGPE 107
Query: 881 LSSQEQMPFTLSFSMITTLGDAVKIRSWNINGLPVDNFSIENGIILFNSNKW-PLLIDPQ 939
+S+QE F F + + V I GLP D ++ II NK P+++D
Sbjct: 108 ISNQEAAGFLKHFEQLLEKVEVVAISGSLPKGLPQDYYA---QIIERCQNKGVPVVLDCS 164
Query: 940 GQANKWLKNVEKGNL--SVVKLTDATLLRTLERAIRTGTAVLLENIQETIDSSLE 992
G L+ V + +V+K L + L + + L + + + + S +E
Sbjct: 165 GAT---LQTVLENPAKPTVIKPNIEELSQLLNQELTEDLESLKQALSQPLFSGIE 216
>gnl|CDD|217970 pfam04220, YihI, Der GTPase activator (YihI). YihI activates the
GTPase activity of Der, a 50S ribosomal subunit stability
factor. The stimulation is specific to Der as YihI does
not stimulate the GTPase activity of Era or ObgE. The
interaction of YihI with Der requires only the C-terminal
78 amino acids of YihI. A yihI deletion mutant is viable
and shows a shorter lag period, but the same post-lag
growth rate as a wild-type strain. yihI is expressed
during the lag period. Overexpression of yihI inhibits
cell growth and biogenesis of the 50S ribosomal subunit.
YihI is an unusual, highly hydrophilic protein with an
uneven distribution of charged residues, resulting in an
N-terminal region with high pI and a C-terminal region
with low pI.
Length = 169
Score = 31.9 bits (73), Expect = 1.7
Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 21/85 (24%)
Query: 1574 ARREGRGEKKKKKKKKKKKKKKKKKK---------KKKKKKKYKKKK------KKK---- 1614
+++ R E ++ +++K+KKK+K K + +K+K +KK KK
Sbjct: 14 GKKKTRYELDQEARERKRKKKRKGLKSGSRHNEESESQKQKGAAQKKDPRIGSKKPVPLI 73
Query: 1615 --KKKKKKKKKKKKKKKKKKKYSRE 1637
K K +K+ KKKK KK K S E
Sbjct: 74 VEFKVKPEKQAPKKKKVKKPKLSPE 98
Score = 31.2 bits (71), Expect = 2.7
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 8/65 (12%)
Query: 1582 KKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKK--------KKKKKKKKKKKKK 1633
+K K K K KKK + + ++ +++K+KKK+K K + +K+K +KK
Sbjct: 1 RKSGKNGPKLAPKGKKKTRYELDQEARERKRKKKRKGLKSGSRHNEESESQKQKGAAQKK 60
Query: 1634 YSREG 1638
R G
Sbjct: 61 DPRIG 65
>gnl|CDD|204935 pfam12474, PKK, Polo kinase kinase. This domain family is found in
eukaryotes, and is approximately 140 amino acids in
length. The family is found in association with
pfam00069. Polo-like kinase 1 (Plx1) is essential during
mitosis for the activation of Cdc25C, for spindle
assembly, and for cyclin B degradation. This family is
Polo kinase kinase (PKK) which phosphorylates Polo kinase
and Polo-like kinase to activate them. PKK is a
serine/threonine kinase.
Length = 142
Score = 31.5 bits (72), Expect = 1.8
Identities = 19/71 (26%), Positives = 43/71 (60%), Gaps = 10/71 (14%)
Query: 1579 RGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREG 1638
R E+K + K K+ K +KK+ K++ +K + ++++KK+ K +K+++++K +K+
Sbjct: 58 RAEQKTRLKMFKESLKIEKKELKQEVEKLPRFQEQEKKRMKAEKEEQEQKHQKQ------ 111
Query: 1639 GGGGEKELVQK 1649
E+E + K
Sbjct: 112 ----EREFLAK 118
>gnl|CDD|222649 pfam14284, PcfJ, PcfJ-like protein. The PcfJ-like protein family
includes the E. faecalis PcfJ protein, which is
functionally uncharacterized. It is found in bacteria and
viruses, and is typically between 159 and 170 amino acids
in length. There is a conserved HCV sequence motif.
Length = 169
Score = 31.5 bits (72), Expect = 1.8
Identities = 11/32 (34%), Positives = 21/32 (65%)
Query: 1589 KKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKK 1620
K + KK+K+K +K +K+Y + +K ++ K K
Sbjct: 36 AKYQAKKEKEKAEKMRKRYPELEKIFRELKSK 67
Score = 31.5 bits (72), Expect = 2.1
Identities = 10/32 (31%), Positives = 21/32 (65%)
Query: 1582 KKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKK 1613
K + KK+K+K +K +K+ + +K +++ K K
Sbjct: 36 AKYQAKKEKEKAEKMRKRYPELEKIFRELKSK 67
Score = 31.1 bits (71), Expect = 2.9
Identities = 9/34 (26%), Positives = 20/34 (58%)
Query: 1602 KKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYS 1635
K + K+K+K +K +K+ + +K ++ K K+
Sbjct: 36 AKYQAKKEKEKAEKMRKRYPELEKIFRELKSKFE 69
Score = 30.0 bits (68), Expect = 6.8
Identities = 10/32 (31%), Positives = 20/32 (62%)
Query: 1593 KKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKK 1624
K + KK+K+K +K +K+ + +K ++ K K
Sbjct: 36 AKYQAKKEKEKAEKMRKRYPELEKIFRELKSK 67
Score = 29.6 bits (67), Expect = 8.8
Identities = 10/32 (31%), Positives = 19/32 (59%)
Query: 1592 KKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKK 1623
K + KK+K+K +K K+ + +K ++ K K
Sbjct: 36 AKYQAKKEKEKAEKMRKRYPELEKIFRELKSK 67
Score = 29.6 bits (67), Expect = 9.0
Identities = 10/32 (31%), Positives = 20/32 (62%)
Query: 1586 KKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKK 1617
K + KK+K+K +K +K+ + +K ++ K K
Sbjct: 36 AKYQAKKEKEKAEKMRKRYPELEKIFRELKSK 67
>gnl|CDD|218332 pfam04929, Herpes_DNAp_acc, Herpes DNA replication accessory factor.
Replicative DNA polymerases are capable of polymerising
tens of thousands of nucleotides without dissociating
from their DNA templates. The high processivity of these
polymerases is dependent upon accessory proteins that
bind to the catalytic subunit of the polymerase or to the
substrate. The Epstein-Barr virus (EBV) BMRF1 protein is
an essential component of the viral DNA polymerase and is
absolutely required for lytic virus replication. BMRF1 is
also a transactivator. This family is predicted to have a
UL42 like structure.
Length = 381
Score = 32.7 bits (75), Expect = 1.8
Identities = 16/53 (30%), Positives = 20/53 (37%), Gaps = 3/53 (5%)
Query: 1551 PQAWASKSYPSLKPLGSYIV---DLLARREGRGEKKKKKKKKKKKKKKKKKKK 1600
P S P S R K+K++ KK+KKKK KK K
Sbjct: 322 PDTSDSDPSTETPPPASLSHSPPAAFERPLALSPKRKREGDKKQKKKKSKKLK 374
>gnl|CDD|219668 pfam07964, Red1, Rec10 / Red1. Rec10 / Red1 is involved in meiotic
recombination and chromosome segregation during
homologous chromosome formation. This protein localises
to the synaptonemal complex in S. cerevisiae and the
analogous structures (linear elements) in S. pombe. This
family is currently only found in fungi.
Length = 706
Score = 32.9 bits (75), Expect = 1.9
Identities = 19/71 (26%), Positives = 25/71 (35%)
Query: 1579 RGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREG 1638
+ +KK K K+ K K K K KK+ + K KK K K K +
Sbjct: 460 KELRKKVGKSKQTKLKNFKPVPNKSKKQLANNNSQNIKSKKVVKAKTNNKANLQDVGECS 519
Query: 1639 GGGGEKELVQK 1649
KE K
Sbjct: 520 SPPNNKEKNDK 530
Score = 31.8 bits (72), Expect = 4.1
Identities = 18/71 (25%), Positives = 23/71 (32%)
Query: 1578 GRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSRE 1637
+K K K+ K K K K KK+ + K KK K K K +
Sbjct: 461 ELRKKVGKSKQTKLKNFKPVPNKSKKQLANNNSQNIKSKKVVKAKTNNKANLQDVGECSS 520
Query: 1638 GGGGGEKELVQ 1648
EK Q
Sbjct: 521 PPNNKEKNDKQ 531
>gnl|CDD|215239 PLN02436, PLN02436, cellulose synthase A.
Length = 1094
Score = 32.9 bits (75), Expect = 1.9
Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 8/51 (15%)
Query: 1595 KKKKKKKKKKKKYKK--------KKKKKKKKKKKKKKKKKKKKKKKKYSRE 1637
KKKK K + K +KKKKKKK K+KKKKK ++ K+ ++ E
Sbjct: 661 KKKKPPGKTCNCWPKWCCLCCGSRKKKKKKKSKEKKKKKNREASKQIHALE 711
Score = 32.5 bits (74), Expect = 2.7
Identities = 15/25 (60%), Positives = 20/25 (80%)
Query: 1580 GEKKKKKKKKKKKKKKKKKKKKKKK 1604
G +KKKKKKK K+KKKKK ++ K+
Sbjct: 682 GSRKKKKKKKSKEKKKKKNREASKQ 706
Score = 31.0 bits (70), Expect = 6.5
Identities = 14/25 (56%), Positives = 20/25 (80%)
Query: 1583 KKKKKKKKKKKKKKKKKKKKKKKKY 1607
+KKKKKKK K+KKKKK ++ K+ +
Sbjct: 684 RKKKKKKKSKEKKKKKNREASKQIH 708
>gnl|CDD|131796 TIGR02749, prenyl_cyano, solanesyl diphosphate synthase. Members of
this family all are from cyanobacteria or
plastid-containing eukaryotes. A member from Arabidopsis
(where both plastoquinone and ubiquinone contain the
C(45) prenyl moiety) was characterized by heterologous
expression as a solanesyl diphosphate synthase
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Menaquinone and ubiquinone].
Length = 322
Score = 32.4 bits (74), Expect = 2.0
Identities = 24/62 (38%), Positives = 30/62 (48%), Gaps = 8/62 (12%)
Query: 940 GQANKWLKNVEKGNLSVVKLTDATLLRTLERAIRTGTAVLLENIQETIDSSLEPVLLKSY 999
QA+ +L N+E NL VVKL + E I+ G Q D SLE L KS+
Sbjct: 120 AQASWYLANLE--NLEVVKLISKVITDFAEGEIKQGL------NQFDSDLSLEDYLEKSF 171
Query: 1000 YK 1001
YK
Sbjct: 172 YK 173
>gnl|CDD|226814 COG4379, COG4379, Mu-like prophage tail protein gpP [General function
prediction only].
Length = 386
Score = 32.5 bits (74), Expect = 2.0
Identities = 13/43 (30%), Positives = 21/43 (48%)
Query: 1562 LKPLGSYIVDLLARREGRGEKKKKKKKKKKKKKKKKKKKKKKK 1604
LK G++ VD ++ K+K +K K KK KK + +
Sbjct: 339 LKEDGAFDVDAYPKKAEAARKRKGDRKGVSHKAKKGGKKNQAE 381
>gnl|CDD|227548 COG5223, COG5223, Uncharacterized conserved protein [Function
unknown].
Length = 240
Score = 31.9 bits (72), Expect = 2.0
Identities = 14/50 (28%), Positives = 32/50 (64%)
Query: 1582 KKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKK 1631
++K +++ + K ++K K +KKK Y K+ + KK+ + KK ++K +++
Sbjct: 10 QRKVHRERTQPKDRRKYGKLEKKKDYVKRAQDINKKQDELKKLREKARER 59
Score = 30.8 bits (69), Expect = 4.9
Identities = 17/67 (25%), Positives = 36/67 (53%)
Query: 1575 RREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKY 1634
+R+ E+ + K ++K K +KKK K+ + KK+ + KK ++K +++ + +
Sbjct: 10 QRKVHRERTQPKDRRKYGKLEKKKDYVKRAQDINKKQDELKKLREKARERNPDEYYHGMH 69
Query: 1635 SREGGGG 1641
S + GG
Sbjct: 70 SVKTDGG 76
Score = 30.0 bits (67), Expect = 9.4
Identities = 13/51 (25%), Positives = 31/51 (60%)
Query: 1580 GEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKK 1630
++K +++ + K ++K K +KKK K+ + KK+ + KK ++K +++
Sbjct: 9 PQRKVHRERTQPKDRRKYGKLEKKKDYVKRAQDINKKQDELKKLREKARER 59
>gnl|CDD|219248 pfam06978, POP1, Ribonucleases P/MRP protein subunit POP1. This
family represents a conserved region approximately 150
residues long located towards the N-terminus of the POP1
subunit that is common to both the RNase MRP and RNase P
ribonucleoproteins (EC:3.1.26.5). These RNA-containing
enzymes generate mature tRNA molecules by cleaving their
5' ends.
Length = 158
Score = 31.5 bits (72), Expect = 2.0
Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
Query: 1574 ARREGRGEKKKKKKKKKKKKKKKKK----KKKKKKKKYKKKKKKKK 1615
A+RE + K +KK K+ + + +KY+K++K+KK
Sbjct: 55 AKREMAKDNTPTKLSRKKPSKRLLRLALARPPNLSRKYRKRQKRKK 100
>gnl|CDD|222911 PHA02616, PHA02616, VP2/VP3; Provisional.
Length = 259
Score = 32.0 bits (72), Expect = 2.1
Identities = 15/61 (24%), Positives = 22/61 (36%)
Query: 1590 KKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGGGGEKELVQK 1649
K K + K+K+ + KK KK K K + R G G V++
Sbjct: 197 KDIYKIPTQAVKRKQDELHPVSPTKKAALSKKSKWTGTKSSQSSKKRRGRSTGRSTTVRR 256
Query: 1650 N 1650
N
Sbjct: 257 N 257
>gnl|CDD|238686 cd01390, HMGB-UBF_HMG-box, HMGB-UBF_HMG-box, class II and III members
of the HMG-box superfamily of DNA-binding proteins. These
proteins bind the minor groove of DNA in a non-sequence
specific fashion and contain two or more tandem HMG
boxes. Class II members include non-histone chromosomal
proteins, HMG1 and HMG2, which bind to bent or distorted
DNA such as four-way DNA junctions, synthetic DNA
cruciforms, kinked cisplatin-modified DNA, DNA bulges,
cross-overs in supercoiled DNA, and can cause looping of
linear DNA. Class III members include nucleolar and
mitochondrial transcription factors, UBF and mtTF1, which
bind four-way DNA junctions.
Length = 66
Score = 29.5 bits (67), Expect = 2.1
Identities = 16/64 (25%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Query: 1563 KPLGSYIVDLLARREGRGEKKKKKKKKKKKKKKKKKKKK---KKKKKYKKKKKKKKKKKK 1619
+PL +Y + +R ++ + K +K K+ ++KKKY++K +K K++ +
Sbjct: 3 RPLSAYFLFSQEQRPKLKKENPDASVTEVTKILGEKWKELSEEEKKKYEEKAEKDKERYE 62
Query: 1620 KKKK 1623
K+ K
Sbjct: 63 KEMK 66
>gnl|CDD|219947 pfam08639, SLD3, DNA replication regulator SLD3. The SLD3 DNA
replication regulator is required for loading and
maintenance of Cdc45 on chromatin during DNA replication.
Length = 437
Score = 32.5 bits (74), Expect = 2.2
Identities = 18/52 (34%), Positives = 30/52 (57%)
Query: 1569 IVDLLARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKK 1620
I++LLA R K +K+ KKK K+ + + K++K+ K+KK KK+
Sbjct: 112 ILELLALELDRFTKFEKEYKKKLLKRSQNLDRSKRRKRRKRKKNKKQDLPVL 163
Score = 32.1 bits (73), Expect = 2.6
Identities = 13/40 (32%), Positives = 24/40 (60%)
Query: 1589 KKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKK 1628
K +K+ KKK K+ + + K++K++K+KK KK+
Sbjct: 124 TKFEKEYKKKLLKRSQNLDRSKRRKRRKRKKNKKQDLPVL 163
Score = 31.7 bits (72), Expect = 4.0
Identities = 13/40 (32%), Positives = 24/40 (60%)
Query: 1590 KKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKK 1629
K +K+ KKK K+ + + K++K++K+KK KK+
Sbjct: 124 TKFEKEYKKKLLKRSQNLDRSKRRKRRKRKKNKKQDLPVL 163
Score = 30.9 bits (70), Expect = 5.5
Identities = 13/40 (32%), Positives = 24/40 (60%)
Query: 1591 KKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKK 1630
K +K+ KKK K+ + + K++K++K+KK KK+
Sbjct: 124 TKFEKEYKKKLLKRSQNLDRSKRRKRRKRKKNKKQDLPVL 163
Score = 30.9 bits (70), Expect = 7.0
Identities = 13/40 (32%), Positives = 23/40 (57%)
Query: 1592 KKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKK 1631
K +K+ KKK K+ + K++K++K+KK KK+
Sbjct: 124 TKFEKEYKKKLLKRSQNLDRSKRRKRRKRKKNKKQDLPVL 163
Score = 30.6 bits (69), Expect = 7.4
Identities = 13/40 (32%), Positives = 24/40 (60%)
Query: 1593 KKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKK 1632
K +K+ KKK K+ + + K++K++K+KK KK+
Sbjct: 124 TKFEKEYKKKLLKRSQNLDRSKRRKRRKRKKNKKQDLPVL 163
Score = 30.6 bits (69), Expect = 9.3
Identities = 13/44 (29%), Positives = 24/44 (54%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKK 1624
+ K +K+ KKK K+ + + K +K++K+KK KK+
Sbjct: 120 LDRFTKFEKEYKKKLLKRSQNLDRSKRRKRRKRKKNKKQDLPVL 163
>gnl|CDD|218437 pfam05107, DUF694, Family of unknown function (DUF694). Family of
hypothetical bacterial proteins.
Length = 278
Score = 32.2 bits (74), Expect = 2.2
Identities = 14/43 (32%), Positives = 28/43 (65%)
Query: 1589 KKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKK 1631
++K+K + + ++ ++ K+KKKKKKKKKKK++ ++
Sbjct: 63 QEKEKLNDEHGELYERADRAEELLKEKKKKKKKKKKKEELREW 105
Score = 31.4 bits (72), Expect = 3.9
Identities = 14/43 (32%), Positives = 29/43 (67%)
Query: 1585 KKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKK 1627
++K+K + + ++ + ++ K+KKKKKKKKKKK++ ++
Sbjct: 63 QEKEKLNDEHGELYERADRAEELLKEKKKKKKKKKKKEELREW 105
Score = 31.0 bits (71), Expect = 4.3
Identities = 14/43 (32%), Positives = 29/43 (67%)
Query: 1588 KKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKK 1630
++K+K + + ++ + ++ K+KKKKKKKKKKK++ ++
Sbjct: 63 QEKEKLNDEHGELYERADRAEELLKEKKKKKKKKKKKEELREW 105
Score = 31.0 bits (71), Expect = 4.7
Identities = 14/42 (33%), Positives = 27/42 (64%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKK 1622
EK+K + + ++ + ++ K+K KKKKKKKKK++ ++
Sbjct: 64 EKEKLNDEHGELYERADRAEELLKEKKKKKKKKKKKEELREW 105
Score = 31.0 bits (71), Expect = 5.3
Identities = 14/43 (32%), Positives = 28/43 (65%)
Query: 1586 KKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKK 1628
++K+K + + ++ + + K+KKKKKKKKKKK++ ++
Sbjct: 63 QEKEKLNDEHGELYERADRAEELLKEKKKKKKKKKKKEELREW 105
Score = 30.3 bits (69), Expect = 8.7
Identities = 14/43 (32%), Positives = 29/43 (67%)
Query: 1592 KKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKY 1634
++K+K + + + + ++ K+KKKKKKKKKKK++ +++
Sbjct: 63 QEKEKLNDEHGELYERADRAEELLKEKKKKKKKKKKKEELREW 105
>gnl|CDD|220719 pfam10368, YkyA, Putative cell-wall binding lipoprotein. YkyA is a
family of proteins containing a lipoprotein signal and a
hydrolase domain. It is similar to cell wall binding
proteins and might also be recognisable by a host immune
defence system. It is thus likely to belong to pathways
important for pathogenicity.
Length = 205
Score = 31.5 bits (72), Expect = 2.2
Identities = 21/55 (38%), Positives = 35/55 (63%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYS 1635
+K++K KK+K+ +K +++ K KKY +K + KK KKK K+ K K++ K Y
Sbjct: 79 DKREKLLKKEKESIEKSEEEFKSAKKYIEKIEDKKLKKKAKQLVKVMKERYKSYD 133
Score = 30.0 bits (68), Expect = 7.1
Identities = 22/66 (33%), Positives = 35/66 (53%)
Query: 1571 DLLARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKK 1630
LA + R + KK+K+ +K +++ K KK +K + KK KKK K+ K K++ K
Sbjct: 73 QALANVDKREKLLKKEKESIEKSEEEFKSAKKYIEKIEDKKLKKKAKQLVKVMKERYKSY 132
Query: 1631 KKKYSR 1636
K Y
Sbjct: 133 DKLYKA 138
>gnl|CDD|227474 COG5145, RAD14, DNA excision repair protein [DNA replication,
recombination, and repair].
Length = 292
Score = 32.3 bits (73), Expect = 2.3
Identities = 16/76 (21%), Positives = 39/76 (51%)
Query: 1568 YIVDLLARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKK 1627
V+ A ++ ++ ++K++++K K +K+KK +KK K+ ++K + + ++K
Sbjct: 198 EEVEQFAIKKWGSLEELDREKQRREKMKDDRKEKKLEKKIKELRRKTRTSNYSRMDVREK 257
Query: 1628 KKKKKKYSREGGGGGE 1643
+K + G E
Sbjct: 258 EKHVHVFDEFVDGPNE 273
>gnl|CDD|238570 cd01164, FruK_PfkB_like, 1-phosphofructokinase (FruK), minor
6-phosphofructokinase (pfkB) and related sugar kinases.
FruK plays an important role in the predominant pathway
for fructose utilisation.This group also contains
tagatose-6-phophate kinase, an enzyme of the tagatose
6-phosphate pathway, which responsible for breakdown of
the galactose moiety during lactose metabolism by
bacteria such as L. lactis.
Length = 289
Score = 32.1 bits (74), Expect = 2.3
Identities = 28/139 (20%), Positives = 57/139 (41%), Gaps = 24/139 (17%)
Query: 702 YEFNLSDLNISMKQLQMFLNDYTTI--PFDALIYLTASIPFQVLAMEVYDRVIKIVGPKK 759
E N IS ++L+ L + D ++ L+ S+P + + Y ++++ K
Sbjct: 101 TEINEPGPEISEEELEALLEKLKALLKKGDIVV-LSGSLP-PGVPADFYAELVRLAREKG 158
Query: 760 AKLAEAEADYAVQMEKLNSKRAQLATVLGKLQAL-----RDELAQ-KSKDKKELEDQIEL 813
A++ L++ L L + R+EL + + + ED I
Sbjct: 159 ARVI------------LDTSGEALLAAL-AAKPFLIKPNREELEELFGRPLGDEEDVIAA 205
Query: 814 CKQKLER-AEKLIGGLGGE 831
++ +ER AE ++ LG +
Sbjct: 206 ARKLIERGAENVLVSLGAD 224
>gnl|CDD|227935 COG5648, NHP6B, Chromatin-associated proteins containing the HMG
domain [Chromatin structure and dynamics].
Length = 211
Score = 31.8 bits (72), Expect = 2.3
Identities = 18/85 (21%), Positives = 30/85 (35%), Gaps = 20/85 (23%)
Query: 1573 LARREG-RGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKK------------- 1618
A + R +++K++ KK K + + K + K + K
Sbjct: 123 EANSDRERYQREKEEYNKKLPNKAPIGPFIENEPKIRPKVEGPSPDKALVEETKIISKAW 182
Query: 1619 ------KKKKKKKKKKKKKKKYSRE 1637
KKKK K KK K++Y
Sbjct: 183 SELDESKKKKYIDKYKKLKEEYDSF 207
>gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria
with the myosin-like domain [Function unknown].
Length = 499
Score = 32.3 bits (73), Expect = 2.3
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 9/76 (11%)
Query: 774 EKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKLERA---EKLIGGLGG 830
L S QL + +L+ALR EL +K+ E + E + +L++A + +
Sbjct: 67 RNLRSGVFQLDDIRPQLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAV----- 121
Query: 831 EKTRWSEASANLSKAL 846
+ + A NL+KA
Sbjct: 122 -RQELAAARQNLAKAQ 136
>gnl|CDD|219791 pfam08317, Spc7, Spc7 kinetochore protein. This domain is found in
cell division proteins which are required for
kinetochore-spindle association.
Length = 321
Score = 32.3 bits (74), Expect = 2.3
Identities = 15/59 (25%), Positives = 28/59 (47%)
Query: 761 KLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKLE 819
+L +A + K++ KR QL + +LQ L + + K EL ++I ++ E
Sbjct: 208 ELEKARQELRSLSVKISEKRKQLEELQQELQELTIAIEALTNKKSELLEEIAEAEKIRE 266
>gnl|CDD|225381 COG2825, HlpA, Outer membrane protein [Cell envelope biogenesis,
outer membrane].
Length = 170
Score = 31.2 bits (71), Expect = 2.4
Identities = 13/58 (22%), Positives = 31/58 (53%)
Query: 1574 ARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKK 1631
++ + + + KK++K+ +K +K+ K K+ K + K + + K + + KK+K
Sbjct: 41 QAKKVSADLESEFKKRQKELQKMQKELKAKEAKLQDDGKMEALSDRAKAEAEIKKEKL 98
Score = 31.2 bits (71), Expect = 2.9
Identities = 13/60 (21%), Positives = 28/60 (46%)
Query: 1578 GRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSRE 1637
+ + + KK++K+ +K +K+ K K K + K + + K + + KK+K
Sbjct: 42 AKKVSADLESEFKKRQKELQKMQKELKAKEAKLQDDGKMEALSDRAKAEAEIKKEKLVNA 101
>gnl|CDD|240309 PTZ00189, PTZ00189, 60S ribosomal protein L21; Provisional.
Length = 160
Score = 31.1 bits (71), Expect = 2.4
Identities = 9/43 (20%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 1599 KKKKKKKKYKKKKKK--KKKKKKKKKKKKKKKKKKKKYSREGG 1639
+K + ++ + K+ K + KKK + K++ R G
Sbjct: 97 RKSRCREDFLKRVAANDAIKAEAKKKGELPSTKRQPAQPRPAG 139
>gnl|CDD|222812 PHA00727, PHA00727, hypothetical protein.
Length = 278
Score = 32.1 bits (73), Expect = 2.4
Identities = 18/52 (34%), Positives = 32/52 (61%)
Query: 1577 EGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKK 1628
+G+ K+ K +K++ + KK++ ++ K + KKKKK KK+K + K KK
Sbjct: 36 DGKTLKRLYKVYEKREFELKKQQFEQLKAELSKKKKKFKKEKVDVRVKVVKK 87
Score = 31.0 bits (70), Expect = 4.6
Identities = 18/50 (36%), Positives = 30/50 (60%)
Query: 1583 KKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKK 1632
K K+ K +K++ + KK++ ++ K + KKKKK KK+K + K KK
Sbjct: 38 KTLKRLYKVYEKREFELKKQQFEQLKAELSKKKKKFKKEKVDVRVKVVKK 87
Score = 31.0 bits (70), Expect = 5.1
Identities = 19/56 (33%), Positives = 36/56 (64%), Gaps = 4/56 (7%)
Query: 1581 EKKKKKKKKKKK----KKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKK 1632
E K+K ++ +K+ K K+ K +K++++ KK++ ++ K + KKKKK KK+K
Sbjct: 22 ELKQKYEEAQKQIADGKTLKRLYKVYEKREFELKKQQFEQLKAELSKKKKKFKKEK 77
Score = 31.0 bits (70), Expect = 5.6
Identities = 20/57 (35%), Positives = 35/57 (61%), Gaps = 4/57 (7%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKK----KKKKKKKKKKKKKKKKKKKKKKK 1633
E+ K+K ++ +K+ K K+ K Y+K+ KK++ ++ K + KKKKK KK+K
Sbjct: 21 EELKQKYEEAQKQIADGKTLKRLYKVYEKREFELKKQQFEQLKAELSKKKKKFKKEK 77
Score = 30.6 bits (69), Expect = 6.8
Identities = 18/51 (35%), Positives = 32/51 (62%), Gaps = 2/51 (3%)
Query: 1586 KKKKKKKKKKKKKKKKKKKKKYKKKKKK--KKKKKKKKKKKKKKKKKKKKY 1634
K K+ K +K++ + KK+++++ K + KKKKK KK+K + K KK+
Sbjct: 38 KTLKRLYKVYEKREFELKKQQFEQLKAELSKKKKKFKKEKVDVRVKVVKKW 88
>gnl|CDD|223767 COG0695, GrxC, Glutaredoxin and related proteins [Posttranslational
modification, protein turnover, chaperones].
Length = 80
Score = 29.6 bits (67), Expect = 2.4
Identities = 9/43 (20%), Positives = 14/43 (32%), Gaps = 1/43 (2%)
Query: 395 CHVAKSWMKELERICAEVIVPANTHQEFRLWLTS-YPSTTFPV 436
C AK + E+ V + +E R + T P
Sbjct: 14 CKRAKRLLDRKGVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQ 56
Score = 29.6 bits (67), Expect = 2.4
Identities = 9/43 (20%), Positives = 14/43 (32%), Gaps = 1/43 (2%)
Query: 587 CHVAKSWMKELERICAEVIVPANTHQEFRLWLTS-YPSTTFPV 628
C AK + E+ V + +E R + T P
Sbjct: 14 CKRAKRLLDRKGVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQ 56
>gnl|CDD|203859 pfam08147, DBP10CT, DBP10CT (NUC160) domain. This C terminal domain
is found in the Dbp10p subfamily of hypothetical RNA
helicases.
Length = 64
Score = 29.2 bits (66), Expect = 2.5
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
Query: 1573 LARREGRGEKKKKKKKKKKKKKKK----KKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKK 1628
L +G GE ++K+ + KKKKK + K KKK + + +K + + + K
Sbjct: 2 LVNDDGAGEPQQKQLMRWDKKKKKYVNRRNGSKGDKKKIRGESGQKIPASYRSGRYDEWK 61
Query: 1629 KKK 1631
K K
Sbjct: 62 KAK 64
>gnl|CDD|233787 TIGR02223, ftsN, cell division protein FtsN. FtsN is a poorly
conserved protein active in cell division in a number of
Proteobacteria. The N-terminal 30 residue region tends to
by Lys/Arg-rich, and is followed by a membrane-spanning
region. This is followed by an acidic low-complexity
region of variable length and a well-conserved C-terminal
domain of two tandem regions matched by pfam05036
(Sporulation related repeat), found in several cell
division and sporulation proteins. The role of FtsN as a
suppressor for other cell division mutations is poorly
understood; it may involve cell wall hydrolysis [Cellular
processes, Cell division].
Length = 298
Score = 32.0 bits (72), Expect = 2.5
Identities = 16/53 (30%), Positives = 26/53 (49%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
EK K K+ K+K+K K+ + + K + K K K K K K+K ++
Sbjct: 174 EKIASKVKEAKQKQKALPKQTAETQSNSKPIETAPKADKADKTKPKPKEKAER 226
Score = 31.6 bits (71), Expect = 3.5
Identities = 16/52 (30%), Positives = 24/52 (46%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKK 1632
E +K K K+ K+K+K K+ + K + K K K K K K+K
Sbjct: 172 ETEKIASKVKEAKQKQKALPKQTAETQSNSKPIETAPKADKADKTKPKPKEK 223
Score = 30.8 bits (69), Expect = 5.4
Identities = 17/64 (26%), Positives = 29/64 (45%)
Query: 1582 KKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGGG 1641
K K+ K+K+K K+ + + K + K K K K K K+K ++ + + G
Sbjct: 176 IASKVKEAKQKQKALPKQTAETQSNSKPIETAPKADKADKTKPKPKEKAERAAALQCGAY 235
Query: 1642 GEKE 1645
KE
Sbjct: 236 ANKE 239
>gnl|CDD|211392 cd11380, Ribosomal_S8e_like, Eukaryotic/archaeal ribosomal protein
S8e and similar proteins. This family contains the
eukaryotic/archaeal ribosomal protein S8, a component of
the small ribosomal subunits, as well as the NSA2 gene
product.
Length = 138
Score = 31.0 bits (71), Expect = 2.5
Identities = 13/45 (28%), Positives = 21/45 (46%)
Query: 1594 KKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREG 1638
K K+K K K +KK+K + +K K ++ +K R G
Sbjct: 4 KHKRKATGGKFKVVRKKRKYELGRKPANTKLGGERFTRKVRVRGG 48
>gnl|CDD|217020 pfam02403, Seryl_tRNA_N, Seryl-tRNA synthetase N-terminal domain.
This domain is found associated with the Pfam tRNA
synthetase class II domain (pfam00587) and represents the
N-terminal domain of seryl-tRNA synthetase.
Length = 108
Score = 30.3 bits (69), Expect = 2.5
Identities = 10/53 (18%), Positives = 27/53 (50%)
Query: 1579 RGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKK 1631
E+ + ++ + K+ K KKKK+ + + K+ K + K + + ++ + +
Sbjct: 44 ELEELQAERNELSKEIGKAKKKKEDAEALIAEVKELKDELKALEAELRELEAE 96
Score = 29.1 bits (66), Expect = 6.1
Identities = 10/54 (18%), Positives = 29/54 (53%)
Query: 1584 KKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSRE 1637
+++++ + + ++ + ++ + K+ K KKKK+ + + K+ K + K E
Sbjct: 36 EERRELQVELEELQAERNELSKEIGKAKKKKEDAEALIAEVKELKDELKALEAE 89
>gnl|CDD|133403 cd04776, HTH_GnyR, Helix-Turn-Helix DNA binding domain of the
regulatory protein GnyR. Putative helix-turn-helix
(HTH) regulatory protein, GnyR, and other related
proteins. GnyR belongs to the gnyRDBHAL cluster, which
is involved in acyclic isoprenoid degradation in
Pseudomonas aeruginosa. These proteins share the
N-terminal DNA binding domain with other transcription
regulators of the MerR superfamily that promote
transcription by reconfiguring the spacer between the
-35 and -10 promoter elements. A typical MerR regulator
is comprised of distinct domains that harbor the
regulatory (effector-binding) site and the active
(DNA-binding) site. Their conserved N-terminal domains
contain predicted winged HTH motifs that mediate DNA
binding, while the dissimilar C-terminal domains bind
specific coactivator molecules.
Length = 118
Score = 30.6 bits (70), Expect = 2.6
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Query: 777 NSKRAQLATVLGKLQALRDELAQKSKD----KKELEDQIELCKQKLE 819
R QL +L K++ R EL Q+ +D EL+ E C+++L
Sbjct: 72 GGNRKQLEKMLEKIEKRRAELEQQRRDIDAALAELDAAEERCRERLA 118
>gnl|CDD|177060 CHL00138, rps5, ribosomal protein S5; Validated.
Length = 143
Score = 30.7 bits (70), Expect = 2.6
Identities = 13/43 (30%), Positives = 21/43 (48%)
Query: 1586 KKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKK 1628
KK KKK +K K+ K++++ + K+ K K KK
Sbjct: 3 FLLKKMYNKKKNRKSNIKENKWEERVIQIKRVSKVVKGGKKLS 45
Score = 30.7 bits (70), Expect = 3.3
Identities = 13/44 (29%), Positives = 20/44 (45%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKK 1624
KK KKK +K K+ K +++ + K+ K K KK
Sbjct: 2 LFLLKKMYNKKKNRKSNIKENKWEERVIQIKRVSKVVKGGKKLS 45
Score = 30.3 bits (69), Expect = 3.6
Identities = 13/44 (29%), Positives = 21/44 (47%)
Query: 1591 KKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKY 1634
KK KKK +K K+ K +++ + K+ K K KK +
Sbjct: 3 FLLKKMYNKKKNRKSNIKENKWEERVIQIKRVSKVVKGGKKLSF 46
Score = 29.6 bits (67), Expect = 7.8
Identities = 13/43 (30%), Positives = 20/43 (46%)
Query: 1588 KKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKK 1630
KK KKK +K K+ K +++ + K+ K K KK
Sbjct: 3 FLLKKMYNKKKNRKSNIKENKWEERVIQIKRVSKVVKGGKKLS 45
>gnl|CDD|217512 pfam03359, GKAP, Guanylate-kinase-associated protein (GKAP) protein.
Length = 342
Score = 32.1 bits (73), Expect = 2.7
Identities = 8/53 (15%), Positives = 20/53 (37%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
+K KK K K ++K +++++ + + K+ K+
Sbjct: 270 KKVPPPVPKKPAKGPIVKPAISREKSLDSSDRQRQEARSRLAAAKRAASFKQN 322
Score = 32.1 bits (73), Expect = 2.7
Identities = 10/63 (15%), Positives = 23/63 (36%)
Query: 1571 DLLARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKK 1630
D L + + +KK KK K K ++ +++++ + + K+
Sbjct: 258 DELQQLKANDWQKKVPPPVPKKPAKGPIVKPAISREKSLDSSDRQRQEARSRLAAAKRAA 317
Query: 1631 KKK 1633
K
Sbjct: 318 SFK 320
Score = 30.9 bits (70), Expect = 5.8
Identities = 8/55 (14%), Positives = 20/55 (36%)
Query: 1583 KKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSRE 1637
KK K K ++K +++++ + + K+ K+ S +
Sbjct: 275 PVPKKPAKGPIVKPAISREKSLDSSDRQRQEARSRLAAAKRAASFKQNSATESAD 329
>gnl|CDD|192488 pfam10228, DUF2228, Uncharacterized conserved protein (DUF2228).
This is a family of conserved proteins of approximately
700 residues found from worms to humans.
Length = 253
Score = 31.6 bits (72), Expect = 2.7
Identities = 18/57 (31%), Positives = 29/57 (50%)
Query: 1586 KKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGGGG 1642
KK K+ KKKK KK ++ + K+ ++K K K++KKK ++ GG
Sbjct: 94 KKSKEIPFKKKKISALKKIQELLTEWAKELGLSLEQKTKVMKQRKKKVVTKTFHKGG 150
Score = 31.6 bits (72), Expect = 2.8
Identities = 18/58 (31%), Positives = 30/58 (51%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREG 1638
KK K+ KKKK KK ++ ++ K+ ++K K K++KKK K + + G
Sbjct: 93 TKKSKEIPFKKKKISALKKIQELLTEWAKELGLSLEQKTKVMKQRKKKVVTKTFHKGG 150
Score = 31.2 bits (71), Expect = 3.8
Identities = 18/57 (31%), Positives = 27/57 (47%)
Query: 1585 KKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGGG 1641
KK K+ KKKK KK ++ + K+ ++K K K++KKK GG
Sbjct: 94 KKSKEIPFKKKKISALKKIQELLTEWAKELGLSLEQKTKVMKQRKKKVVTKTFHKGG 150
>gnl|CDD|217770 pfam03868, Ribosomal_L6e_N, Ribosomal protein L6, N-terminal domain.
Length = 58
Score = 28.9 bits (65), Expect = 2.8
Identities = 13/58 (22%), Positives = 18/58 (31%), Gaps = 14/58 (24%)
Query: 1587 KKKKKKKKKKKKKKK--------------KKKKKYKKKKKKKKKKKKKKKKKKKKKKK 1630
KKKK + + ++ YK+K KK K K K K
Sbjct: 1 MPVAKKKKHRSRNPDLARGIGRYSRSAMYHRRALYKRKAKKGGTKPKVKPPATVVKPV 58
Score = 28.5 bits (64), Expect = 3.4
Identities = 13/58 (22%), Positives = 20/58 (34%), Gaps = 8/58 (13%)
Query: 1584 KKKKKKKKKKKKKKK-----KKKKKKKKYKKK---KKKKKKKKKKKKKKKKKKKKKKK 1633
KKKK + + + + Y ++ K+K KK K K K K
Sbjct: 1 MPVAKKKKHRSRNPDLARGIGRYSRSAMYHRRALYKRKAKKGGTKPKVKPPATVVKPV 58
>gnl|CDD|214998 smart01054, CaM_binding, Plant calmodulin-binding domain. The
sequences featured in this family are found repeated in a
number of plant calmodulin-binding proteins, and are
thought to constitute the calmodulin-binding domains..
Binding of the proteins to calmodulin depends on the
presence of calcium ions.. These proteins are thought to
be involved in various processes, such as plant defence
responses.and stolonisation or tuberization.
Length = 115
Score = 30.4 bits (69), Expect = 2.8
Identities = 14/67 (20%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGG 1640
+ +KK+ ++ K + K + ++ +K K+ KK K+ K + K++ ++
Sbjct: 1 KAEKKEFRRGKIEDPKPEGERPRKWKFLKKVILLKRFVKSLEDKRRLNPREPNV-LPTEV 59
Query: 1641 GGEKELV 1647
E E V
Sbjct: 60 EPEAEKV 66
>gnl|CDD|233605 TIGR01865, cas_Csn1, CRISPR-associated protein Cas9/Csn1, subtype
II/NMEMI. CRISPR loci appear to be mobile elements with
a wide host range. This model represents a protein found
only in CRISPR-containing species, near other
CRISPR-associated proteins (cas), as part of the NMENI
subtype of CRISPR/Cas locus. The species range so far for
this protein is animal pathogens and commensals only
[Mobile and extrachromosomal element functions, Other].
Length = 805
Score = 32.4 bits (74), Expect = 2.8
Identities = 12/52 (23%), Positives = 22/52 (42%)
Query: 1578 GRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKK 1629
R E+ K+ K++ KK + K K+ K+ K++ + K K
Sbjct: 523 AREEQGTNFGKRNSKERYKKNEDKIKEFASALGKEILKEEPTENSSKNILKL 574
Score = 30.9 bits (70), Expect = 7.4
Identities = 15/62 (24%), Positives = 27/62 (43%), Gaps = 5/62 (8%)
Query: 1569 IVDLLARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKK 1628
IV +AR E++ K+ K++ KK + K K+ K+ K++ + K
Sbjct: 518 IVIEMAR-----EEQGTNFGKRNSKERYKKNEDKIKEFASALGKEILKEEPTENSSKNIL 572
Query: 1629 KK 1630
K
Sbjct: 573 KL 574
>gnl|CDD|221805 pfam12848, ABC_tran_2, ABC transporter. This domain is related to
pfam00005.
Length = 85
Score = 29.5 bits (67), Expect = 2.9
Identities = 11/47 (23%), Positives = 31/47 (65%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKK 1627
E+K+++ ++++K +K++K+ KK +++ + + K K K+ + + K
Sbjct: 20 EQKEERLEQQEKAYEKQQKEIKKLEEFIDRFRAKASKAKQAQSRIKA 66
>gnl|CDD|235219 PRK04098, PRK04098, sec-independent translocase; Provisional.
Length = 158
Score = 30.9 bits (70), Expect = 2.9
Identities = 10/51 (19%), Positives = 21/51 (41%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKK 1631
+K ++ ++ + K ++ + K+ K K K KK K+K
Sbjct: 108 KKSLEEDTIPNHLNEEVSNETKLTQESSSDESPKEVKLATKNKTKKHDKEK 158
>gnl|CDD|224755 COG1842, PspA, Phage shock protein A (IM30), suppresses
sigma54-dependent transcription [Transcription / Signal
transduction mechanisms].
Length = 225
Score = 31.5 bits (72), Expect = 3.2
Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 10/86 (11%)
Query: 760 AKLAEAEADYA-VQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKL 818
K E + + A + EKL K A+LA G + L E ++ K+ LED + + +L
Sbjct: 54 QKQLERKLEEAQARAEKLEEK-AELALQAGN-EDLAREALEE---KQSLEDLAKALEAEL 108
Query: 819 ERA----EKLIGGLGGEKTRWSEASA 840
++A EKL L + + +E A
Sbjct: 109 QQAEEQVEKLKKQLAALEQKIAELRA 134
>gnl|CDD|233421 TIGR01453, grpIintron_endo, group I intron endonuclease. This model
represents one subfamily of endonucleases containing the
endo/excinuclease amino terminal domain, pfam01541 at its
amino end. A distinct subfamily includes excinuclease abc
subunit c (uvrC). Members of pfam01541 are often termed
GIY-YIG endonucleases after conserved motifs near the
amino end. This subfamily in This model is found in open
reading frames of group I introns in both phage and
mitochondria. The closely related endonucleases of phage
T4: segA, segB, segC, segD and segE, score below the
trusted cutoff for the family.
Length = 214
Score = 31.2 bits (71), Expect = 3.3
Identities = 16/57 (28%), Positives = 24/57 (42%)
Query: 1578 GRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKY 1634
G+K K ++ K K K K + KK ++ KKK +K+K KK
Sbjct: 111 FSGKKNNPWYGKTHSEETKAKISKNKLGENNPFFGKKHSEETKKKISEKEKGAKKVN 167
>gnl|CDD|223368 COG0291, RpmI, Ribosomal protein L35 [Translation, ribosomal
structure and biogenesis].
Length = 65
Score = 28.7 bits (65), Expect = 3.3
Identities = 15/46 (32%), Positives = 21/46 (45%)
Query: 1582 KKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKK 1627
K K KK K+ K K K+K K+ KK K+K+ +K
Sbjct: 3 KMKTKKGAAKRFKITGTGKIKRKHAGKRHILTKKSTKRKRHLRKTA 48
Score = 28.7 bits (65), Expect = 4.1
Identities = 15/47 (31%), Positives = 21/47 (44%)
Query: 1588 KKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKY 1634
K K KK K+ K K K+K K+ KK K+K+ +K
Sbjct: 3 KMKTKKGAAKRFKITGTGKIKRKHAGKRHILTKKSTKRKRHLRKTAV 49
>gnl|CDD|227818 COG5531, COG5531, SWIB-domain-containing proteins implicated in
chromatin remodeling [Chromatin structure and dynamics].
Length = 237
Score = 31.3 bits (71), Expect = 3.4
Identities = 13/55 (23%), Positives = 20/55 (36%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYS 1635
K K K++ K+ + + K+ KKKK K +K K S
Sbjct: 74 RKTTGKNDLPKEEDSSLPSSKETENGDTEGKETDKKKKSSTISKNSPSGEKVKLS 128
>gnl|CDD|115185 pfam06513, DUF1103, Repeat of unknown function (DUF1103). This
family consists of several repeats of around 30 residues
in length which are found specifically in
mature-parasite-infected erythrocyte surface antigen
proteins from Plasmodium falciparum. This family often
found in conjunction with pfam00226.
Length = 215
Score = 31.4 bits (70), Expect = 3.5
Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 3/59 (5%)
Query: 1578 GRGEKKKKKKKKKKKKKK---KKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
G G+K+ K+K KK K +K +K+ K+K +K+ K+K KKK KK K+ + K
Sbjct: 4 GEGDKEDVKEKNDGKKDKVIGSEKTQKEIKEKVEKRVKEKCKKKVKKGIKENDTEGNDK 62
Score = 31.0 bits (69), Expect = 3.7
Identities = 21/52 (40%), Positives = 31/52 (59%)
Query: 1587 KKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREG 1638
K+ K+K KK K +K +K+ K+K +K+ K+K KKK KK K+ EG
Sbjct: 8 KEDVKEKNDGKKDKVIGSEKTQKEIKEKVEKRVKEKCKKKVKKGIKENDTEG 59
>gnl|CDD|131526 TIGR02473, flagell_FliJ, flagellar export protein FliJ. Members of
this family are the FliJ protein found, in nearly every
case, in the midst of other flagellar biosynthesis genes
in bacgterial genomes. Typically the fliJ gene is found
adjacent to the gene for the flagellum-specific ATPase
FliI. Sequence scoring in the gray zone between trusted
and noise cutoffs include both probable FliJ proteins and
components of bacterial type III secretion systems.
Length = 141
Score = 30.4 bits (69), Expect = 3.5
Identities = 22/127 (17%), Positives = 57/127 (44%), Gaps = 4/127 (3%)
Query: 1502 VLKQELIRYNRLTVIIKKSLQEVRQAVKGLIVMSKELEEINTSIMFGKIPQAWASKSYPS 1561
+L + + + K+ E + L + K EE + + A S
Sbjct: 7 LLDLREKEEEQAKLELAKAQAEFERLETQLQQLIKYREEYEQQ----ALEKVGAGTSALE 62
Query: 1562 LKPLGSYIVDLLARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKK 1621
L +I L R + + ++ +++ + K+++ + +++ K +K K+KK+K+ + +
Sbjct: 63 LSNYQRFIRQLDQRIQQQQQELALLQQEVEAKRERLLEARRELKALEKLKEKKQKEYRAE 122
Query: 1622 KKKKKKK 1628
+ K+++K
Sbjct: 123 EAKREQK 129
>gnl|CDD|217754 pfam03836, RasGAP_C, RasGAP C-terminus.
Length = 139
Score = 30.3 bits (69), Expect = 3.6
Identities = 27/82 (32%), Positives = 36/82 (43%), Gaps = 15/82 (18%)
Query: 1569 IVDLLARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKK----------KKKKKKK-- 1616
I + RE R ++ KK ++ KK + K K + + YK KKKK K
Sbjct: 39 IRNKRRYRERRKKELKKLEQTLKKLRDKNKYLESQLDYYKSYLDNVLSTLQKKKKFSKQK 98
Query: 1617 ---KKKKKKKKKKKKKKKKKYS 1635
KK +KK KK K KYS
Sbjct: 99 FSVKKLQKKHGKKPKFGSYKYS 120
>gnl|CDD|216470 pfam01385, OrfB_IS605, Probable transposase. This family includes
IS891, IS1136 and IS1341. DUF1225, pfam06774, has now
been merged into this family.
Length = 226
Score = 31.1 bits (71), Expect = 3.6
Identities = 6/37 (16%), Positives = 16/37 (43%)
Query: 1601 KKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSRE 1637
K + K+ + + K K ++K +K + + +
Sbjct: 154 KSINQYLNKEIARLQSKLKGSNRRKTSRKLARLHRKR 190
Score = 30.7 bits (70), Expect = 5.8
Identities = 10/47 (21%), Positives = 22/47 (46%)
Query: 1577 EGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKK 1623
GR K + K+ + + K K ++K +K + +K+ ++K
Sbjct: 149 NGRPLKSINQYLNKEIARLQSKLKGSNRRKTSRKLARLHRKRSNRRK 195
Score = 29.9 bits (68), Expect = 9.5
Identities = 7/40 (17%), Positives = 18/40 (45%)
Query: 1594 KKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
K + K+ + + K K ++K +K + +K+ +
Sbjct: 154 KSINQYLNKEIARLQSKLKGSNRRKTSRKLARLHRKRSNR 193
>gnl|CDD|218300 pfam04870, Moulting_cycle, Moulting cycle. This family of proteins
plays a role in the moulting cycle of nematodes, which
involves the synthesis of a new collagen-rich cuticle
underneath the existing cuticle and the subsequent
removal of the old cuticle.
Length = 323
Score = 31.7 bits (72), Expect = 3.6
Identities = 14/50 (28%), Positives = 28/50 (56%)
Query: 1595 KKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGGGGEK 1644
K K+ K K + ++ K++ K+ K+KK+ + + +K+ K+ R G K
Sbjct: 17 KNKEPKSKWQDTIQRIKRESKRIKQKKEMESRYRKRFSKFQRAMFGLNPK 66
>gnl|CDD|234053 TIGR02903, spore_lon_C, ATP-dependent protease, Lon family. Members
of this protein family resemble the widely distributed
ATP-dependent protease La, also called Lon and LonA. It
resembles even more closely LonB, which is a LonA paralog
found in genomes if and only if the species is capable of
endospore formation (as in Bacillus subtilis, Clostridium
tetani, and select other members of the Firmicutes) and
expressed specifically in the forespore compartment.
Members of this family are restricted to a subset of
spore-forming species, and are very likely to participate
in the program of endospore formation. We propose the
designation LonC [Protein fate, Degradation of proteins,
peptides, and glycopeptides, Cellular processes,
Sporulation and germination].
Length = 615
Score = 31.7 bits (72), Expect = 3.7
Identities = 32/147 (21%), Positives = 67/147 (45%), Gaps = 17/147 (11%)
Query: 1489 RKYPILYNQSMNT----VLKQELIRYNRLTVIIKKSLQEVRQAVKGLIVMSKELEEINTS 1544
+ LYN N L+ + I+Y L +I + ++E A++ ++ L+ +
Sbjct: 4 VQVNALYNVLKNVLGPKRLRVKAIKYKALGLIKSEKVEEKVLALQKIVYEDPGLDTVPD- 62
Query: 1545 IMFGKIPQAWASKSYPSLKPLGSYIVDLLARR--EGRGEKKKKKKKKKKKKKKKKKKKKK 1602
+ L+ +I D+LARR E R E+K + + ++++ K ++ + +
Sbjct: 63 ----------PRELPEILEDTEDHIADILARRTVENRIERKVETRMQERQNKYLEEIRLQ 112
Query: 1603 KKKKYKKKKKKKKKKKKKKKKKKKKKK 1629
K+ K + KK ++ +K +KKK
Sbjct: 113 VLKEEKGPENSSTLKKLERLEKLEKKK 139
>gnl|CDD|153289 cd07605, I-BAR_IMD, Inverse (I)-BAR, also known as the IRSp53/MIM
homology Domain (IMD), a dimerization module that binds
and bends membranes. Inverse (I)-BAR (or IMD) is a
member of the Bin/Amphiphysin/Rvs (BAR) domain family. It
is a dimerization and lipid-binding module that bends
membranes and induces membrane protrusions in the
opposite direction compared to classical BAR and F-BAR
domains, which produce membrane invaginations. IMD
domains are found in Insulin Receptor tyrosine kinase
Substrate p53 (IRSp53), Missing in Metastasis (MIM), and
Brain-specific Angiogenesis Inhibitor 1-Associated
Protein 2-like (BAIAP2L) proteins. These are multi-domain
proteins that act as scaffolding proteins and transducers
of a variety of signaling pathways that link membrane
dynamics and the underlying actin cytoskeleton. Most
members contain an N-terminal IMD, an SH3 domain, and a
WASP homology 2 (WH2) actin-binding motif at the
C-terminus, exccept for MIM which does not carry an SH3
domain. Some members contain additional domains and
motifs. The IMD domain binds and bundles actin filaments,
binds membranes and produces membrane protrusions, and
interacts with the small GTPase Rac.
Length = 223
Score = 31.2 bits (71), Expect = 3.8
Identities = 16/46 (34%), Positives = 28/46 (60%)
Query: 1586 KKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKK 1631
+KK + +K K +K KK+YK+K++ K + + KK +KK +K
Sbjct: 100 EKKLELDQKVINKFEKDYKKEYKQKREDLDKARSELKKLQKKSQKS 145
Score = 30.8 bits (70), Expect = 4.8
Identities = 18/73 (24%), Positives = 36/73 (49%)
Query: 1565 LGSYIVDLLARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKK 1624
++ +L+ E + E +K K +K KK+ K+K++ + + KK +KK +K
Sbjct: 88 AKAFHGELILPLEKKLELDQKVINKFEKDYKKEYKQKREDLDKARSELKKLQKKSQKSGT 147
Query: 1625 KKKKKKKKKYSRE 1637
K ++K + E
Sbjct: 148 GKYQEKLDQALEE 160
Score = 30.4 bits (69), Expect = 5.9
Identities = 17/49 (34%), Positives = 29/49 (59%)
Query: 1590 KKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREG 1638
+KK + +K K +K YKK+ K+K++ K + + KK +KK + S G
Sbjct: 100 EKKLELDQKVINKFEKDYKKEYKQKREDLDKARSELKKLQKKSQKSGTG 148
>gnl|CDD|218754 pfam05795, Plasmodium_Vir, Plasmodium vivax Vir protein. This family
consists of several Vir proteins specific to Plasmodium
vivax. The vir genes are present at about 600-1,000
copies per haploid genome and encode proteins that are
immunovariant in natural infections, indicating that they
may have a functional role in establishing chronic
infection through antigenic variation.
Length = 348
Score = 31.4 bits (71), Expect = 3.8
Identities = 18/52 (34%), Positives = 20/52 (38%)
Query: 1583 KKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKY 1634
KKK K K K K K K K YKK K+K + K KK
Sbjct: 142 KKKIKSKNKNCNKYCKYLKYIKSLYKKYKEKCCSSNDNNYCPEYFKCDKKYN 193
Score = 30.6 bits (69), Expect = 6.8
Identities = 17/50 (34%), Positives = 20/50 (40%)
Query: 1585 KKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKY 1634
+ K KKK K K K K KY K K KK K+K +Y
Sbjct: 136 ENYDKIKKKIKSKNKNCNKYCKYLKYIKSLYKKYKEKCCSSNDNNYCPEY 185
Score = 30.2 bits (68), Expect = 8.8
Identities = 21/61 (34%), Positives = 25/61 (40%), Gaps = 6/61 (9%)
Query: 1580 GEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKK------KKKKKKKKKKKKKKKKKKKKKK 1633
K KK KKK K K ++KK+K + K KKK K K K K K
Sbjct: 98 WNKINKKNSKKKNKCKPDFNYIDILDEWKKRKDLYDYFENYDKIKKKIKSKNKNCNKYCK 157
Query: 1634 Y 1634
Y
Sbjct: 158 Y 158
>gnl|CDD|219589 pfam07808, RED_N, RED-like protein N-terminal region. This family
contains sequences that are similar to the N-terminal
region of Red protein. This and related proteins contain
a RED repeat which consists of a number of RE and RD
sequence elements. The region in question has several
conserved NLS sequences and a putative trimeric
coiled-coil region, suggesting that these proteins are
expressed in the nucleus. The function of Red protein is
unknown, but efficient sequestration to nuclear bodies
suggests that its expression may be tightly regulated of
that the protein self-aggregates extremely efficiently.
Length = 238
Score = 31.4 bits (71), Expect = 3.8
Identities = 11/38 (28%), Positives = 23/38 (60%)
Query: 1584 KKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKK 1621
KKKKK +K+++ +K+ KY+ + ++++K K
Sbjct: 1 KKKKKYAYLRKQEENAEKEINPKYRDRARERRKGINKD 38
>gnl|CDD|217787 pfam03910, Adeno_PV, Adenovirus minor core protein PV.
Length = 336
Score = 31.3 bits (71), Expect = 3.8
Identities = 10/33 (30%), Positives = 19/33 (57%)
Query: 1607 YKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGG 1639
Y + K + K +K K+ KK+KK+++K +
Sbjct: 19 YGPRPVKDEAKPRKIKRVKKRKKREEKDELDDE 51
>gnl|CDD|227038 COG4694, COG4694, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 758
Score = 31.8 bits (72), Expect = 4.0
Identities = 17/72 (23%), Positives = 33/72 (45%)
Query: 1579 RGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREG 1638
+ E KK+ KK +KK K + + K + ++K++K + KK +++ K+Y
Sbjct: 119 KIESKKESINKKNEKKIKNEASLQVKTQREEKEEKDFIADCWRNLYKKNEERFKEYLENF 178
Query: 1639 GGGGEKELVQKN 1650
K + K
Sbjct: 179 KRKKFKRKILKE 190
>gnl|CDD|223596 COG0522, RpsD, Ribosomal protein S4 and related proteins
[Translation, ribosomal structure and biogenesis].
Length = 205
Score = 30.7 bits (70), Expect = 4.0
Identities = 13/54 (24%), Positives = 27/54 (50%)
Query: 1579 RGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKK 1632
G KKK ++ K++ K++K YK + +++ KK + ++K+K
Sbjct: 5 PGPKKKLSRRLGFNPWLKERLCKERKLPYKPGQHGQERWKKLSDYGLQLREKQK 58
Score = 30.7 bits (70), Expect = 4.1
Identities = 9/43 (20%), Positives = 21/43 (48%)
Query: 1590 KKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKK 1632
+ KKK ++ + K++ K++K K + +++ KK
Sbjct: 3 RYPGPKKKLSRRLGFNPWLKERLCKERKLPYKPGQHGQERWKK 45
Score = 30.7 bits (70), Expect = 4.5
Identities = 12/50 (24%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Query: 1573 LARREGRGEKKKKKKKKKKKKK----KKKKKKKKKKKKYKKKKKKKKKKK 1618
L+RR G K++ K++K + +++ KK Y + ++K+K +
Sbjct: 11 LSRRLGFNPWLKERLCKERKLPYKPGQHGQERWKKLSDYGLQLREKQKLR 60
>gnl|CDD|222613 pfam14235, DUF4337, Domain of unknown function (DUF4337). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria. Proteins in this
family are typically between 187 and 201 amino acids in
length. There is a single completely conserved residue Q
that may be functionally important.
Length = 158
Score = 30.6 bits (70), Expect = 4.0
Identities = 8/40 (20%), Positives = 21/40 (52%)
Query: 1593 KKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKK 1632
+ + + K +YKK+K + + + K+ + K K+ + +
Sbjct: 65 AAAPRAELQAKIARYKKEKARYRSEAKELEAKAKEAEAES 104
Score = 29.5 bits (67), Expect = 8.2
Identities = 8/40 (20%), Positives = 21/40 (52%)
Query: 1586 KKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKK 1625
+ + + K + KK+K +Y+ + K+ + K K+ + +
Sbjct: 65 AAAPRAELQAKIARYKKEKARYRSEAKELEAKAKEAEAES 104
>gnl|CDD|146145 pfam03357, Snf7, Snf7. This family of proteins are involved in
protein sorting and transport from the endosome to the
vacuole/lysosome in eukaryotic cells. Vacuoles/lysosomes
play an important role in the degradation of both lipids
and cellular proteins. In order to perform this
degradative function, vacuoles/lysosomes contain numerous
hydrolases which have been transported in the form of
inactive precursors via the biosynthetic pathway and are
proteolytically activated upon delivery to the
vacuole/lysosome. The delivery of transmembrane proteins,
such as activated cell surface receptors to the lumen of
the vacuole/lysosome, either for
degradation/downregulation, or in the case of hydrolases,
for proper localisation, requires the formation of
multivesicular bodies (MVBs). These late endosomal
structures are formed by invaginating and budding of the
limiting membrane into the lumen of the compartment.
During this process, a subset of the endosomal membrane
proteins is sorted into the forming vesicles. Mature MVBs
fuse with the vacuole/lysosome, thereby releasing cargo
containing vesicles into its hydrolytic lumen for
degradation. Endosomal proteins that are not sorted into
the intralumenal MVB vesicles are either recycled back to
the plasma membrane or Golgi complex, or remain in the
limiting membrane of the MVB and are thereby transported
to the limiting membrane of the vacuole/lysosome as a
consequence of fusion. Therefore, the MVB sorting pathway
plays a critical role in the decision between recycling
and degradation of membrane proteins. A few archaeal
sequences are also present within this family.
Length = 169
Score = 30.7 bits (70), Expect = 4.0
Identities = 15/49 (30%), Positives = 25/49 (51%)
Query: 1571 DLLARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKK 1619
L +++ EKK KK + + KK KK K K+KK+ +K+ +
Sbjct: 11 RELDKKQESLEKKIKKLEAEIKKLAKKGNKDAALILLKQKKRYEKQLDQ 59
Score = 29.5 bits (67), Expect = 8.7
Identities = 15/48 (31%), Positives = 25/48 (52%)
Query: 1587 KKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKY 1634
KK++ +KK KK + + KK KK K K+KK+ +K+ +
Sbjct: 14 DKKQESLEKKIKKLEAEIKKLAKKGNKDAALILLKQKKRYEKQLDQLD 61
Score = 29.5 bits (67), Expect = 9.0
Identities = 17/58 (29%), Positives = 29/58 (50%)
Query: 1574 ARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKK 1631
A R ++ KK++ +KK KK + + KK KK K K+KK+ +K+ +
Sbjct: 2 AILSLRKAIRELDKKQESLEKKIKKLEAEIKKLAKKGNKDAALILLKQKKRYEKQLDQ 59
>gnl|CDD|214368 CHL00117, rpoC2, RNA polymerase beta'' subunit; Reviewed.
Length = 1364
Score = 31.8 bits (73), Expect = 4.2
Identities = 12/52 (23%), Positives = 20/52 (38%), Gaps = 7/52 (13%)
Query: 1591 KKKKKKKKKKKKKKKKYKKKKKKKKKKKK-------KKKKKKKKKKKKKKYS 1635
+KKKK+ + K + + K + KK K+ KK K +
Sbjct: 707 EKKKKRIELKIFSGDIHFPGETDKISRHSGILIPPGTGKKNSKESKKIKNWI 758
>gnl|CDD|225055 COG2144, COG2144, Selenophosphate synthetase-related proteins
[General function prediction only].
Length = 324
Score = 31.2 bits (71), Expect = 4.2
Identities = 9/35 (25%), Positives = 19/35 (54%)
Query: 414 VPANTHQEFRLWLTSYPSTTFPVSVLENGIKMIIE 448
+P +FR WL YP + F ++V ++ +++
Sbjct: 242 IPYPADVDFRQWLKRYPGSGFVLTVDPEDVEEVVD 276
Score = 31.2 bits (71), Expect = 4.2
Identities = 9/35 (25%), Positives = 19/35 (54%)
Query: 606 VPANTHQEFRLWLTSYPSTTFPVSVLENGIKMIIE 640
+P +FR WL YP + F ++V ++ +++
Sbjct: 242 IPYPADVDFRQWLKRYPGSGFVLTVDPEDVEEVVD 276
>gnl|CDD|129888 TIGR00806, rfc, RFC reduced folate carrier. The Reduced Folate
Carrier (RFC) Family (TC 2.A.48) Members of the RFC
family mediate the uptake of folate, reduce folate,
derivatives of reduced folate and the drug,
methotrexate. Proteins of the RFC family are so-far
restricted to animals. RFC proteins possess 12 putative
transmembrane a-helical spanners (TMSs) and evidence for
a 12 TMS topology has been published for the human RFC.
The RFC transporters appear to transport reduced folate
by an energy-dependent, pH-dependent, Na+-independent
mechanism. Folate:H+ symport, folate:OH- antiport and
folate:anion antiport mechanisms have been proposed, but
the energetic mechanism is not well defined [Transport
and binding proteins, Carbohydrates, organic alcohols,
and acids].
Length = 511
Score = 31.4 bits (71), Expect = 4.2
Identities = 16/75 (21%), Positives = 30/75 (40%), Gaps = 7/75 (9%)
Query: 481 WHKLLFSLCLFHAVVQERKQYGPLGWNIPYEFNLSDLNISMKQLQMFLNDYTTIPFDALI 540
W L+ LC + + Q R G + + L+ LN + + + + +P+ L
Sbjct: 25 WRVLVLYLCFYGFMAQFRP-----GESFITPYLLTVLNFTEETVTNEI--IPVLPYSHLA 77
Query: 541 YLTVDYKYTSQMRQK 555
L + T +R K
Sbjct: 78 VLVPVFLLTDYLRYK 92
Score = 30.2 bits (68), Expect = 9.7
Identities = 15/71 (21%), Positives = 27/71 (38%), Gaps = 10/71 (14%)
Query: 673 WHKLLFSLCLFHAVVQERKQYGPLGWNIPYEFNLSDLNISMKQLQMFLNDYTTIPFDALI 732
W L+ LC + + Q R G + + L+ LN + + + IP
Sbjct: 25 WRVLVLYLCFYGFMAQFRP-----GESFITPYLLTVLNFTEETV-----TNEIIPVLPYS 74
Query: 733 YLTASIPFQVL 743
+L +P +L
Sbjct: 75 HLAVLVPVFLL 85
>gnl|CDD|224023 COG1098, VacB, Predicted RNA binding protein (contains ribosomal
protein S1 domain) [Translation, ribosomal structure and
biogenesis].
Length = 129
Score = 29.9 bits (68), Expect = 4.3
Identities = 10/51 (19%), Positives = 24/51 (47%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKK 1631
E +K+ +K + K + K+ + + K ++ K++ KKK+ +
Sbjct: 79 EPEKQHRKPRFSKSRPKEGFETLLSRLLKWIEESLSTLKRQTKKKRGGRGA 129
Score = 29.6 bits (67), Expect = 7.0
Identities = 11/54 (20%), Positives = 29/54 (53%)
Query: 1583 KKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSR 1636
+K +++ +K+ +K + K + K+ ++ + K ++ K++ KKK+ R
Sbjct: 74 RKLEEEPEKQHRKPRFSKSRPKEGFETLLSRLLKWIEESLSTLKRQTKKKRGGR 127
>gnl|CDD|226400 COG3883, COG3883, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 265
Score = 31.2 bits (71), Expect = 4.4
Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
Query: 758 KKAKLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIEL 813
K L + + Q+ LNS++A+ ++ L A +K LE+Q L
Sbjct: 170 KLETLVALQNELETQLNSLNSQKAEKNALIAALAAKEASAL---GEKAALEEQKAL 222
>gnl|CDD|237869 PRK14962, PRK14962, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 472
Score = 31.7 bits (72), Expect = 4.4
Identities = 10/50 (20%), Positives = 27/50 (54%)
Query: 1584 KKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKK 1633
+ ++ ++K + K+KKK++ K K++K++ + +K+ K+
Sbjct: 332 TRFSSPNVQENDVEEKNDNSNVQQKEKKKEESKAKEEKQEDIEFEKRFKE 381
Score = 30.9 bits (70), Expect = 6.4
Identities = 10/50 (20%), Positives = 27/50 (54%)
Query: 1582 KKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKK 1631
+ ++ ++K ++K KKK++ K K++K++ + +K+ K+
Sbjct: 332 TRFSSPNVQENDVEEKNDNSNVQQKEKKKEESKAKEEKQEDIEFEKRFKE 381
Score = 30.9 bits (70), Expect = 7.3
Identities = 11/58 (18%), Positives = 31/58 (53%)
Query: 1582 KKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGG 1639
+ ++ ++K ++K+ KK++ K K++K++ + +K+ K+ + +E G
Sbjct: 333 RFSSPNVQENDVEEKNDNSNVQQKEKKKEESKAKEEKQEDIEFEKRFKELMEELKEKG 390
Score = 30.5 bits (69), Expect = 8.3
Identities = 9/50 (18%), Positives = 27/50 (54%)
Query: 1587 KKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSR 1636
+ ++ ++K ++K+KKK++ K K++K++ + +K++
Sbjct: 332 TRFSSPNVQENDVEEKNDNSNVQQKEKKKEESKAKEEKQEDIEFEKRFKE 381
Score = 30.1 bits (68), Expect = 10.0
Identities = 9/50 (18%), Positives = 27/50 (54%)
Query: 1583 KKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKK 1632
+ ++ ++K ++ +KKK++ K K++K++ + +K+ K+
Sbjct: 332 TRFSSPNVQENDVEEKNDNSNVQQKEKKKEESKAKEEKQEDIEFEKRFKE 381
>gnl|CDD|219755 pfam08231, SYF2, SYF2 splicing factor. Proteins in this family are
involved in cell cycle progression and pre-mRNA splicing.
Length = 157
Score = 30.4 bits (69), Expect = 4.4
Identities = 16/66 (24%), Positives = 28/66 (42%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGG 1640
EK KKKKKKK K ++ Y+ K++ K K ++ +K+K+ +
Sbjct: 21 EKWDKKKKKKKNKDDFGFNDYEQDALYRAYKRRLKNLKPDLEEYEKQKEAVGEKFYATFY 80
Query: 1641 GGEKEL 1646
+
Sbjct: 81 RTADSI 86
>gnl|CDD|216652 pfam01698, FLO_LFY, Floricaula / Leafy protein. This family consists
of various plant development proteins which are
homologues of floricaula (FLO) and Leafy (LFY) proteins
which are floral meristem identity proteins. Mutations in
the sequences of these proteins affect flower and leaf
development.
Length = 382
Score = 31.5 bits (72), Expect = 4.4
Identities = 11/46 (23%), Positives = 23/46 (50%), Gaps = 6/46 (13%)
Query: 1605 KKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSRE------GGGGGEK 1644
+KKK++KK+++K+ K+ ++ + G GG E+
Sbjct: 177 HSSDSEKKKQRKKQRRKRSKELREDDDDDEDEDDDGEGGGEGGEER 222
Score = 31.1 bits (71), Expect = 5.4
Identities = 12/41 (29%), Positives = 24/41 (58%)
Query: 1603 KKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGGGGE 1643
+KKK++KK+++K+ K+ ++ + +G GGGE
Sbjct: 177 HSSDSEKKKQRKKQRRKRSKELREDDDDDEDEDDDGEGGGE 217
>gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin. Trichoplein
or mitostatin, was first defined as a meiosis-specific
nuclear structural protein. It has since been linked with
mitochondrial movement. It is associated with the
mitochondrial outer membrane, and over-expression leads
to reduction in mitochondrial motility whereas lack of it
enhances mitochondrial movement. The activity appears to
be mediated through binding the mitochondria to the actin
intermediate filaments (IFs).
Length = 349
Score = 31.4 bits (72), Expect = 4.4
Identities = 12/75 (16%), Positives = 48/75 (64%), Gaps = 17/75 (22%)
Query: 1574 ARREGRGEKKKKKKKKKKKK---------KKKKKKKKKKKKK--------YKKKKKKKKK 1616
+ E E ++K++K+KK + + ++K+++K++++ Y+++K ++++
Sbjct: 108 IQEEDEAEAQEKREKQKKLREEIDEFNEERIERKEEEKEREREEELKILEYQREKAEREE 167
Query: 1617 KKKKKKKKKKKKKKK 1631
+++ +++++K++K++
Sbjct: 168 EREAERRERKEEKER 182
Score = 31.0 bits (71), Expect = 5.4
Identities = 11/77 (14%), Positives = 47/77 (61%), Gaps = 13/77 (16%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKK--------KKKKKKKKKKKKKK 1632
+ ++K++K+KK +++ + +++ + K+++K++++++ ++K +++++++ ++
Sbjct: 114 AEAQEKREKQKKLREEIDEFNEERIERKEEEKEREREEELKILEYQREKAEREEEREAER 173
Query: 1633 KYSREGGGGGEKELVQK 1649
+ +E EKE
Sbjct: 174 RERKE-----EKEREVA 185
>gnl|CDD|176075 cd08693, C2_PI3K_class_I_beta_delta, C2 domain present in class I
beta and delta phosphatidylinositol 3-kinases (PI3Ks).
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases)
regulate cell processes such as cell growth,
differentiation, proliferation, and motility. PI3Ks work
on phosphorylation of phosphatidylinositol,
phosphatidylinositide (4)P (PtdIns (4)P),2 or
PtdIns(4,5)P2. Specifically they phosphorylate the D3
hydroxyl group of phosphoinositol lipids on the inositol
ring. There are 3 classes of PI3Ks based on structure,
regulation, and specificity. All classes contain a C2
domain, a PIK domain, and a kinase catalytic domain. The
members here are class I, beta and delta isoforms of
PI3Ks and contain both a Ras-binding domain and a
p85-binding domain. Class II PI3Ks contain both of these
as well as a PX domain, and a C-terminal C2 domain
containing a nuclear localization signal. C2 domains
fold into an 8-standed beta-sandwich that can adopt 2
structural arrangements: Type I and Type II,
distinguished by a circular permutation involving their
N- and C-terminal beta strands. Many C2 domains are
Ca2+-dependent membrane-targeting modules that bind a
wide variety of substances including bind phospholipids,
inositol polyphosphates, and intracellular proteins.
Most C2 domain proteins are either signal transduction
enzymes that contain a single C2 domain, such as protein
kinase C, or membrane trafficking proteins which contain
at least two C2 domains, such as synaptotagmin 1.
However, there are a few exceptions to this including RIM
isoforms and some splice variants of piccolo/aczonin and
intersectin which only have a single C2 domain. C2
domains with a calcium binding region have negatively
charged residues, primarily aspartates, that serve as
ligands for calcium ions. Members have a type-I
topology.
Length = 173
Score = 30.4 bits (69), Expect = 4.5
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 1607 YKKKKKKKKKKKKKKKKKKKKKK 1629
Y+ KK K K+ +K + KKKKKK
Sbjct: 83 YEVSKKAKGKRSRKNQTKKKKKK 105
Score = 30.0 bits (68), Expect = 7.1
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKK 1602
E KK K K+ +K + KKKKKK
Sbjct: 84 EVSKKAKGKRSRKNQTKKKKKK 105
>gnl|CDD|222426 pfam13870, DUF4201, Domain of unknown function (DUF4201). This is a
family of coiled-coil proteins from eukaryotes. The
function is not known.
Length = 177
Score = 30.6 bits (70), Expect = 4.5
Identities = 15/54 (27%), Positives = 34/54 (62%), Gaps = 4/54 (7%)
Query: 1590 KKKKKKKKKKKKKKKKKYKKKKKKKKKKKKK----KKKKKKKKKKKKKYSREGG 1639
K+K +++ ++ KK+ K+K+++ K +K+ K ++ K +K+ KK ++GG
Sbjct: 83 KEKLHMLEEELERLKKELKEKEERLAKLRKELYKVKLERDKLRKQNKKLRQQGG 136
Score = 29.9 bits (68), Expect = 6.7
Identities = 11/57 (19%), Positives = 26/57 (45%)
Query: 769 YAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKLERAEKLI 825
Y + L + +L + +L+ L+ EL +K + +L ++ K + ++ K
Sbjct: 72 YTNTVHILTHLKEKLHMLEEELERLKKELKEKEERLAKLRKELYKVKLERDKLRKQN 128
>gnl|CDD|188306 TIGR03319, RNase_Y, ribonuclease Y. Members of this family are
RNase Y, an endoribonuclease. The member from Bacillus
subtilis, YmdA, has been shown to be involved in
turnover of yitJ riboswitch [Transcription, Degradation
of RNA].
Length = 514
Score = 31.4 bits (72), Expect = 4.5
Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Query: 758 KKAKLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIE-LCKQ 816
++ +L E + E L+ K L L+ EL+ K K+ E E+++E L +
Sbjct: 74 RRNELQRLERRLLQREETLDRKMESLDKKEENLEKKEKELSNKEKNLDEKEEELEELIAE 133
Query: 817 KLERAEKLIGGLGGEKTR 834
+ E E+ I GL E+ +
Sbjct: 134 QREELER-ISGLTQEEAK 150
>gnl|CDD|119399 cd00082, HisKA, Histidine Kinase A (dimerization/phosphoacceptor)
domain; Histidine Kinase A dimers are formed through
parallel association of 2 domains creating 4-helix
bundles; usually these domains contain a conserved His
residue and are activated via trans-autophosphorylation
by the catalytic domain of the histidine kinase. They
subsequently transfer the phosphoryl group to the Asp
acceptor residue of a response regulator protein.
Two-component signalling systems, consisting of a
histidine protein kinase that senses a signal input and
a response regulator that mediates the output, are
ancient and evolutionarily conserved signaling
mechanisms in prokaryotes and eukaryotes.
Length = 65
Score = 28.3 bits (64), Expect = 4.6
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
Query: 783 LATVLGKLQALRDELAQKSKDKKELEDQIELCKQKLERAEKLIGGL 828
L + G L+ L +EL D +E + +E +++ ER +LI L
Sbjct: 19 LTAIRGALELLEEEL----LDDEEQREYLERIREEAERLLRLINDL 60
>gnl|CDD|227931 COG5644, COG5644, Uncharacterized conserved protein [Function
unknown].
Length = 869
Score = 31.6 bits (71), Expect = 4.7
Identities = 12/49 (24%), Positives = 27/49 (55%)
Query: 1573 LARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKK 1621
L R+ R ++ KKK ++ ++ K+ KKK +++ ++ +KK+
Sbjct: 637 LDRKMRRIKRIKKKAYRRIRRDKRLKKKMPEEENTQENHLGSEKKRHGG 685
Score = 30.8 bits (69), Expect = 7.3
Identities = 12/47 (25%), Positives = 26/47 (55%)
Query: 1576 REGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKK 1622
R+ R K+ KKK ++ ++ K+ KKK +++ ++ +KK+
Sbjct: 639 RKMRRIKRIKKKAYRRIRRDKRLKKKMPEEENTQENHLGSEKKRHGG 685
>gnl|CDD|181061 PRK07631, PRK07631, amidophosphoribosyltransferase; Provisional.
Length = 475
Score = 31.3 bits (71), Expect = 4.7
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query: 1311 ERVSYVQDKSDICVLNILKIIRPDKVIQGIQIYVS-KNLGEQYIVSPP 1357
ER + Q++S IC + + RPD + GI ++ + KNLG++ + P
Sbjct: 235 ERFAPNQNRS-ICSMEYIYFARPDSNVDGINVHTARKNLGKRLALEAP 281
>gnl|CDD|176047 cd08402, C2B_Synaptotagmin-1, C2 domain second repeat present in
Synaptotagmin 1. Synaptotagmin is a
membrane-trafficking protein characterized by a
N-terminal transmembrane region, a linker, and 2
C-terminal C2 domains. Synaptotagmin 1, a member of the
class 1 synaptotagmins, is located in the brain and
endocranium and localized to the synaptic vesicles and
secretory granules. It functions as a Ca2+ sensor for
fast exocytosis. It, like synaptotagmin-2, has an
N-glycosylated N-terminus. Synaptotagmin 4, a member of
class 4 synaptotagmins, is located in the brain. It
functions are unknown. It, like synaptotagmin-11, has an
Asp to Ser substitution in its C2A domain. Previously
all synaptotagmins were thought to be calcium sensors in
the regulation of neurotransmitter release and hormone
secretion, but it has been shown that not all of them
bind calcium. Of the 17 identified synaptotagmins only
8 bind calcium (1-3, 5-7, 9, 10). The function of the
two C2 domains that bind calcium are: regulating the
fusion step of synaptic vesicle exocytosis (C2A) and
binding to phosphatidyl-inositol-3,4,5-triphosphate
(PIP3) in the absence of calcium ions and to
phosphatidylinositol bisphosphate (PIP2) in their
presence (C2B). C2B also regulates also the recycling
step of synaptic vesicles. C2 domains fold into an
8-standed beta-sandwich that can adopt 2 structural
arrangements: Type I and Type II, distinguished by a
circular permutation involving their N- and C-terminal
beta strands. Many C2 domains are Ca2+-dependent
membrane-targeting modules that bind a wide variety of
substances including bind phospholipids, inositol
polyphosphates, and intracellular proteins. Most C2
domain proteins are either signal transduction enzymes
that contain a single C2 domain, such as protein kinase
C, or membrane trafficking proteins which contain at
least two C2 domains, such as synaptotagmin 1. However,
there are a few exceptions to this including RIM
isoforms and some splice variants of piccolo/aczonin and
intersectin which only have a single C2 domain. C2
domains with a calcium binding region have negatively
charged residues, primarily aspartates, that serve as
ligands for calcium ions. This cd contains the second C2
repeat, C2B, and has a type-I topology.
Length = 136
Score = 30.1 bits (68), Expect = 4.7
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 8/56 (14%)
Query: 2 KMWKNKKTERKERDLNASPLVYDEIDNLDLLTEKINQY-----IVDYNTQNSNKPI 52
K K KKT K+R LN Y+E + ++ E+I + ++DY+ N PI
Sbjct: 49 KRLKKKKTTIKKRTLNP---YYNESFSFEVPFEQIQKVHLIVTVLDYDRIGKNDPI 101
>gnl|CDD|219256 pfam06991, Prp19_bind, Splicing factor, Prp19-binding domain. This
family represents the C-terminus (approximately 300
residues) of proteins that are involved as binding
partners for Prp19 as part of the nuclear pore complex.
The family in Drosophila is necessary for pre-mRNA
splicing, and the human protein has been found in
purifications of the spliceosome. In the past this family
was thought, erroneously, to be associated with
microfibrillin.
Length = 277
Score = 31.0 bits (70), Expect = 4.9
Identities = 17/62 (27%), Positives = 37/62 (59%)
Query: 1560 PSLKPLGSYIVDLLARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKK 1619
P LKP+ + D + +E E K+K +++ K+K +++K++ K +++ KK+ + KK
Sbjct: 35 PRLKPVFTRKKDRITIQEREREAAKEKALEEEAKRKAEERKRETLKIVEEEVKKELELKK 94
Query: 1620 KK 1621
+
Sbjct: 95 RN 96
>gnl|CDD|181619 PRK09039, PRK09039, hypothetical protein; Validated.
Length = 343
Score = 31.1 bits (71), Expect = 5.0
Identities = 16/71 (22%), Positives = 28/71 (39%), Gaps = 11/71 (15%)
Query: 772 QMEKLNSKRAQLATVLG-----------KLQALRDELAQKSKDKKELEDQIELCKQKLER 820
+++LNS+ A+LA +L + LR L+ ++ L+ +
Sbjct: 54 ALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAA 113
Query: 821 AEKLIGGLGGE 831
AE G L E
Sbjct: 114 AEGRAGELAQE 124
>gnl|CDD|218688 pfam05680, ATP-synt_E, ATP synthase E chain. This family consists of
several ATP synthase E chain sequences which are
components of the CF(0) subunit.
Length = 83
Score = 29.0 bits (65), Expect = 5.0
Identities = 13/35 (37%), Positives = 24/35 (68%)
Query: 1598 KKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKK 1632
KKK++K ++Y+ ++K +K K KKK+ K++ K
Sbjct: 33 KKKEEKIREYEAQEKLIEKAKAAYAKKKQAKQEAK 67
>gnl|CDD|202101 pfam02050, FliJ, Flagellar FliJ protein.
Length = 122
Score = 29.5 bits (67), Expect = 5.0
Identities = 9/45 (20%), Positives = 35/45 (77%)
Query: 1584 KKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKK 1628
++ +K+ ++ +++ ++ +++KK +K +++KKK++K++ ++++K
Sbjct: 69 EQAEKQVEQAREQWQEANQERKKLEKLLEREKKKEQKEENRREQK 113
>gnl|CDD|216095 pfam00748, Calpain_inhib, Calpain inhibitor. This region is found
multiple times in calpain inhibitor proteins.
Length = 131
Score = 29.8 bits (67), Expect = 5.3
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 6/63 (9%)
Query: 1571 DLLARREGRGEKKKKKKKKKKKKKKKKKKKKKKKK------KYKKKKKKKKKKKKKKKKK 1624
D L +RE E+KK + K K+K K++K +K ++ +Y+ + K K K K
Sbjct: 69 DSLGQREPDPEEKKPVEDKVKEKAKEEKLEKLGEREDTIPPEYRLLEAKDKDGKPLLPKP 128
Query: 1625 KKK 1627
+++
Sbjct: 129 EEE 131
>gnl|CDD|221533 pfam12329, TMF_DNA_bd, TATA element modulatory factor 1 DNA
binding. This is the middle region of a family of TATA
element modulatory factor 1 proteins conserved in
eukaryotes that contains at its N-terminal section a
number of leucine zippers that could potentially form
coiled coil structures. The whole proteins bind to the
TATA element of some RNA polymerase II promoters and
repress their activity. by competing with the binding of
TATA binding protein. TMFs are evolutionarily conserved
golgins that bind Rab6, a ubiquitous ras-like
GTP-binding Golgi protein, and contribute to Golgi
organisation in animal and plant cells.
Length = 74
Score = 28.4 bits (64), Expect = 5.3
Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 7/70 (10%)
Query: 760 AKLAEAEADYAVQM---EKLNSKRAQLATVLGKLQA----LRDELAQKSKDKKELEDQIE 812
KLAE + A M EKL+ K + + KL+A L E+A+ K ++LE ++E
Sbjct: 5 KKLAEKDEQIAQLMEEGEKLSKKELKHNNTIKKLRAKNKELEKEIAELKKKLEKLEKELE 64
Query: 813 LCKQKLERAE 822
+++L+RAE
Sbjct: 65 NLEERLKRAE 74
>gnl|CDD|218215 pfam04696, Pinin_SDK_memA, pinin/SDK/memA/ protein conserved region.
Members of this family have very varied localisations
within the eukaryotic cell. pinin is known to localise at
the desmosomes and is implicated in anchoring
intermediate filaments to the desmosomal plaque. SDK2/3
is a dynamically localised nuclear protein thought to be
involved in modulation of alternative pre-mRNA splicing.
memA is a tumour marker preferentially expressed in human
melanoma cell lines. A common feature of the members of
this family is that they may all participate in
regulating protein-protein interactions.
Length = 131
Score = 29.8 bits (67), Expect = 5.5
Identities = 11/58 (18%), Positives = 40/58 (68%)
Query: 1580 GEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSRE 1637
E + K+K++ + ++K ++++K+++ + +K+K++ +++++K+ + +K ++K E
Sbjct: 26 EESRLTSKEKRRAEIEQKLEEQEKQEREELRKEKRELFEERRRKQLELRKLEQKMEDE 83
Score = 29.4 bits (66), Expect = 8.0
Identities = 11/68 (16%), Positives = 42/68 (61%)
Query: 1565 LGSYIVDLLARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKK 1624
G + L + K+K++ + ++K ++++K+++++ +K+K++ +++++K+ +
Sbjct: 13 FGLLLGTLQKFSQEESRLTSKEKRRAEIEQKLEEQEKQEREELRKEKRELFEERRRKQLE 72
Query: 1625 KKKKKKKK 1632
+K ++K
Sbjct: 73 LRKLEQKM 80
>gnl|CDD|217443 pfam03234, CDC37_N, Cdc37 N terminal kinase binding. Cdc37 is a
molecular chaperone required for the activity of
numerous eukaryotic protein kinases. This domain
corresponds to the N terminal domain which binds
predominantly to protein kinases and is found N terminal
to the Hsp (Heat shocked protein) 90-binding domain
pfam08565. Expression of a construct consisting of only
the N-terminal domain of Saccharomyces pombe Cdc37
results in cellular viability. This indicates that
interactions with the cochaperone Hsp90 may not be
essential for Cdc37 function.
Length = 172
Score = 30.1 bits (68), Expect = 5.6
Identities = 13/40 (32%), Positives = 24/40 (60%)
Query: 789 KLQALRDELAQKSKDKKELEDQIELCKQKLERAEKLIGGL 828
K QA+ + Q+ ++ +ELE + + + LER +KL+ L
Sbjct: 33 KQQAIHERREQRKQEIEELEKERIMNDRLLERVDKLLSEL 72
>gnl|CDD|233160 TIGR00869, sec62, protein translocation protein, Sec62 family.
Members of the NSCC2 family have been sequenced from
various yeast, fungal and animals species including
Saccharomyces cerevisiae, Drosophila melanogaster and
Homo sapiens. These proteins are the Sec62 proteins,
believed to be associated with the Sec61 and Sec63
constituents of the general protein secretary systems of
yeast microsomes. They are also the non-selective cation
(NS) channels of the mammalian cytoplasmic membrane. The
yeast Sec62 protein has been shown to be essential for
cell growth. The mammalian NS channel proteins has been
implicated in platelet derived growth factor(PGDF)
dependent single channel current in fibroblasts. These
channels are essentially closed in serum deprived
tissue-culture cells and are specifically opened by
exposure to PDGF. These channels are reported to exhibit
equal selectivity for Na+, K+ and Cs+ with low
permeability to Ca2+, and no permeability to anions
[Transport and binding proteins, Amino acids, peptides
and amines].
Length = 232
Score = 30.6 bits (69), Expect = 5.6
Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 11/43 (25%)
Query: 1561 SLKPLGSYIVDLLARREGRGEKKKKKKKKKKKKKKKKKKKKKK 1603
S KPL + EK K KKK K KK KKK+ K+
Sbjct: 198 SFKPLWGW-----------HEKDKYSYKKKLKSKKLKKKQAKR 229
Score = 30.3 bits (68), Expect = 7.6
Identities = 13/22 (59%), Positives = 15/22 (68%)
Query: 1604 KKKYKKKKKKKKKKKKKKKKKK 1625
K KY KKK K KK KKK+ K+
Sbjct: 208 KDKYSYKKKLKSKKLKKKQAKR 229
Score = 29.9 bits (67), Expect = 8.7
Identities = 13/22 (59%), Positives = 15/22 (68%)
Query: 1602 KKKKKYKKKKKKKKKKKKKKKK 1623
K K YKKK K KK KKK+ K+
Sbjct: 208 KDKYSYKKKLKSKKLKKKQAKR 229
>gnl|CDD|203489 pfam06644, ATP11, ATP11 protein. This family consists of several
eukaryotic ATP11 proteins. In Saccharomyces cerevisiae,
expression of functional F1-ATPase requires two proteins
encoded by the ATP11 and ATP12 genes. Atp11p is a
molecular chaperone of the mitochondrial matrix that
participates in the biogenesis pathway to form F1, the
catalytic unit of the ATP synthase.
Length = 250
Score = 30.8 bits (70), Expect = 5.8
Identities = 19/59 (32%), Positives = 25/59 (42%)
Query: 1573 LARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKK 1631
A+ G ++ KK K K +KK+ KK K+ K K K K KKK K
Sbjct: 11 KAKESGLEFIERLKKALKDKIEKKEFSAKKPPTGPSKQASKFKTLKPPKPADKKKPFDK 69
>gnl|CDD|225058 COG2147, RPL19A, Ribosomal protein L19E [Translation, ribosomal
structure and biogenesis].
Length = 150
Score = 30.0 bits (68), Expect = 5.8
Identities = 12/59 (20%), Positives = 29/59 (49%)
Query: 1579 RGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSRE 1637
RG +K+ +KKK +++ +K K K++ K+ + +++ +K + K +
Sbjct: 60 RGRARKRHAQKKKGRRRGPGSRKGTKGARMPSKERWIKRIRALRRELRKLRDDGKIDKH 118
Score = 30.0 bits (68), Expect = 6.0
Identities = 13/58 (22%), Positives = 28/58 (48%), Gaps = 7/58 (12%)
Query: 1587 KKKKKK-------KKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSRE 1637
K K KK +K+ +KKK +++ +K K + K++ K+ + ++ R+
Sbjct: 51 KAKPKKGISRGRARKRHAQKKKGRRRGPGSRKGTKGARMPSKERWIKRIRALRRELRK 108
>gnl|CDD|201634 pfam01165, Ribosomal_S21, Ribosomal protein S21.
Length = 53
Score = 27.9 bits (63), Expect = 5.9
Identities = 9/35 (25%), Positives = 25/35 (71%)
Query: 1589 KKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKK 1623
K+K +K ++ ++++ Y+K +K+K+KK++ ++
Sbjct: 19 KRKVEKNGILRELRRRRFYEKPSEKRKRKKREARR 53
>gnl|CDD|218550 pfam05311, Baculo_PP31, Baculovirus 33KDa late protein (PP31).
Autographa californica nuclear polyhedrosis virus
(AcMNPV) pp31 is a nuclear phosphoprotein that
accumulates in the virogenic stroma, which is the viral
replication centre in the infected-cell nucleus, binds to
DNA, and serves as a late expression factor.
Length = 267
Score = 30.8 bits (70), Expect = 5.9
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 1608 KKKKKKKKKKKKKKKKKKKKKKKKKKYS 1635
+K+K KK KK KK+K+K+
Sbjct: 222 SPSRKRKAPKKVAKKVAAAKKRKQKRSP 249
Score = 30.8 bits (70), Expect = 6.0
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 1604 KKKYKKKKKKKKKKKKKKKKKKKKKKKK 1631
+K+K KK KK KK+K+K+
Sbjct: 221 SSPSRKRKAPKKVAKKVAAAKKRKQKRS 248
Score = 30.4 bits (69), Expect = 7.7
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 1592 KKKKKKKKKKKKKKKYKKKKKKKKKKKK 1619
+K+K KK K KK+K+K+
Sbjct: 221 SSPSRKRKAPKKVAKKVAAAKKRKQKRS 248
Score = 30.0 bits (68), Expect = 9.4
Identities = 13/54 (24%), Positives = 17/54 (31%)
Query: 1584 KKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSRE 1637
K K K + +K+K KK KK KK+K R
Sbjct: 195 KNILLKLNDNDKTAASSASVVPTPQSSSPSRKRKAPKKVAKKVAAAKKRKQKRS 248
>gnl|CDD|204414 pfam10211, Ax_dynein_light, Axonemal dynein light chain. Axonemal
dynein light chain proteins play a dynamic role in
flagellar and cilia motility. Eukaryotic cilia and
flagella are complex organelles consisting of a core
structure, the axoneme, which is composed of nine
microtubule doublets forming a cylinder that surrounds a
pair of central singlet microtubules. This
ultra-structural arrangement seems to be one of the most
stable micro-tubular assemblies known and is responsible
for the flagellar and ciliary movement of a large number
of organisms ranging from protozoan to mammals. This
light chain interacts directly with the N-terminal half
of the heavy chains.
Length = 189
Score = 30.3 bits (69), Expect = 5.9
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 789 KLQALRDELAQKSKDKKELEDQIELCKQKLERAEK 823
L E+ + ++K+ELE ++ + KLE EK
Sbjct: 121 GKSELEQEIKKLEEEKEELEKRVAELEAKLEAIEK 155
>gnl|CDD|234541 TIGR04320, Surf_Exclu_PgrA, SEC10/PgrA surface exclusion domain.
This model describes a conserved domain found in surface
proteins of a number of Firmutes. Many members have
LPXTG C-terminal anchoring motifs and a substantial
number have the KxYKxGKxW putative sorting signal at the
N-terminus. The tetracycline resistance plasmid pCF10 in
Enterococcus faecalis promotes conjugal plasmid transfer
in response to sex pheromones, but PgrA/Sec10 encoded by
that plasmid, a member of this family, specifically
inhibits the ability of cells to receive homologous
plasmids. The phenomenon is called surface exclusion.
Length = 356
Score = 30.8 bits (70), Expect = 6.2
Identities = 13/67 (19%), Positives = 26/67 (38%), Gaps = 1/67 (1%)
Query: 758 KKAKLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQ-KSKDKKELEDQIELCKQ 816
+A LA A+ L + + A L + ELA +++ + ++ + +
Sbjct: 266 AQADLAAAQTALNTAQAALTTAQTAYAAAQAALATAQKELANAQAQALQTAQNNLATAQA 325
Query: 817 KLERAEK 823
L AE
Sbjct: 326 ALANAEA 332
>gnl|CDD|223250 COG0172, SerS, Seryl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 429
Score = 31.0 bits (71), Expect = 6.2
Identities = 7/51 (13%), Positives = 25/51 (49%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKK 1631
E + ++ + K+ + K+ + ++ + K+ K+K K+ + + + +
Sbjct: 47 ELQAERNELSKEIGRALKRGEDDAEELIAEVKELKEKLKELEAALDELEAE 97
Score = 31.0 bits (71), Expect = 6.4
Identities = 10/67 (14%), Positives = 30/67 (44%), Gaps = 4/67 (5%)
Query: 1571 DLLARREGRGEKKKK----KKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKK 1626
LL E R + ++ + ++ + K+ + K+ + ++ + K+ K+K K+ +
Sbjct: 30 KLLELDEERRKLLRELEELQAERNELSKEIGRALKRGEDDAEELIAEVKELKEKLKELEA 89
Query: 1627 KKKKKKK 1633
+ +
Sbjct: 90 ALDELEA 96
>gnl|CDD|144512 pfam00935, Ribosomal_L44, Ribosomal protein L44.
Length = 77
Score = 28.3 bits (64), Expect = 6.5
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 4/66 (6%)
Query: 1586 KKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKK----KKKYSREGGGG 1641
KK K + K++ +K+K Y + K KK K KK + + KK + R G
Sbjct: 11 KKGKASLLAQGKRRYDRKQKGYGGQTKPVPGKKAKPTKKIVLRLRCTECKKAHQRPGKRC 70
Query: 1642 GEKELV 1647
+ ELV
Sbjct: 71 KKFELV 76
>gnl|CDD|153280 cd07596, BAR_SNX, The Bin/Amphiphysin/Rvs (BAR) domain of Sorting
Nexins. BAR domains are dimerization, lipid binding and
curvature sensing modules found in many different
proteins with diverse functions. Sorting nexins (SNXs)
are Phox homology (PX) domain containing proteins that
are involved in regulating membrane traffic and protein
sorting in the endosomal system. SNXs differ from each
other in their lipid-binding specificity, subcellular
localization and specific function in the endocytic
pathway. A subset of SNXs also contain BAR domains. The
PX-BAR structural unit determines the specific membrane
targeting of SNXs. BAR domains form dimers that bind to
membranes, induce membrane bending and curvature, and
may also be involved in protein-protein interactions.
Length = 218
Score = 30.4 bits (69), Expect = 6.5
Identities = 10/52 (19%), Positives = 25/52 (48%)
Query: 774 EKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKLERAEKLI 825
+ L SK+AQL + ++ + ++ +E E +E +++ E + +
Sbjct: 124 KDLASKKAQLEKLKAAPGIKPAKVEELEEELEEAESALEEARKRYEEISERL 175
>gnl|CDD|182222 PRK10072, PRK10072, putative transcriptional regulator; Provisional.
Length = 96
Score = 29.0 bits (65), Expect = 6.5
Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Query: 1090 ETEDKILEVLSSSQGNILEDESAVQILTSSKVLSAEITAKQEISSRTEKEIDD-ARMMYI 1148
E +D + E+LSS + + +DE+ LT + T +++ T +IDD AR++ +
Sbjct: 2 EYKDPMFELLSSLEQIVFKDETQKITLTQK---TTSFTEFEQLRKGTGLKIDDFARVLGV 58
Query: 1149 PVS 1151
V+
Sbjct: 59 SVA 61
>gnl|CDD|203471 pfam06518, DUF1104, Protein of unknown function (DUF1104). This
family consists of several hypothetical proteins of
unknown function which appear to be found largely in
Helicobacter pylori.
Length = 93
Score = 28.8 bits (65), Expect = 6.5
Identities = 14/56 (25%), Positives = 27/56 (48%)
Query: 1582 KKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSRE 1637
K+ K K+K+ K K K +K K + ++K +K+ +++ KK +E
Sbjct: 32 KRLGKMKEKEAKNFKAGFKAAMRKNLSKMSVEDRRKFRKEVREEMNKKVDAMSVKE 87
>gnl|CDD|192987 pfam12325, TMF_TATA_bd, TATA element modulatory factor 1 TATA
binding. This is the C-terminal conserved coiled coil
region of a family of TATA element modulatory factor 1
proteins conserved in eukaryotes. The proteins bind to
the TATA element of some RNA polymerase II promoters and
repress their activity. by competing with the binding of
TATA binding protein. TMF1_TATA_bd is the most conserved
part of the TMFs. TMFs are evolutionarily conserved
golgins that bind Rab6, a ubiquitous ras-like
GTP-binding Golgi protein, and contribute to Golgi
organisation in animal and plant cells. The Rab6-binding
domain appears to be the same region as this C-terminal
family.
Length = 121
Score = 29.5 bits (67), Expect = 6.6
Identities = 17/62 (27%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 772 QMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKLERAEKLIGGLGGE 831
++ +L ++R + + KL +EL + K+ +ELE ++E +Q+ E +L+ GE
Sbjct: 39 ELARLEAERDEARQEIVKLTEENEELRELKKEIEELEKELEDLEQRYETTLELL----GE 94
Query: 832 KT 833
K+
Sbjct: 95 KS 96
>gnl|CDD|201347 pfam00619, CARD, Caspase recruitment domain. Motif contained in
proteins involved in apoptotic signaling. Predicted to
possess a DEATH (pfam00531) domain-like fold.
Length = 85
Score = 28.7 bits (65), Expect = 6.6
Identities = 16/52 (30%), Positives = 27/52 (51%)
Query: 774 EKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKLERAEKLI 825
E L R L LGKL L D L +K+ +E ++I+ + ++A +L+
Sbjct: 2 ELLRKNRVALVRSLGKLDGLLDYLLEKNVLTEEEYEKIKANTTRRDKARELL 53
>gnl|CDD|225437 COG2882, FliJ, Flagellar biosynthesis chaperone [Cell motility and
secretion / Intracellular trafficking and secretion /
Posttranslational modification, protein turnover,
chaperones].
Length = 148
Score = 29.6 bits (67), Expect = 6.8
Identities = 19/129 (14%), Positives = 53/129 (41%), Gaps = 4/129 (3%)
Query: 1501 TVLKQELIRYNRLTVIIKKSLQEVRQAVKGLIVMSKELEEINTSIMFGKIPQAWASKSYP 1560
+L + + K E A + L ++S E + + S
Sbjct: 9 KLLDLAKKEEEEAAIELSKIRSEKENAEEQLKMLSGYRNEY----EQNLNEKLKSGVSAA 64
Query: 1561 SLKPLGSYIVDLLARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKK 1620
+ +I L + + + K +K+ ++K++ ++K+ + K +K K+++K +
Sbjct: 65 QWQNYQQFISQLEVAIDQQQSQLSKLRKQVEQKREIWQEKQIELKALEKLKERQKTEFLL 124
Query: 1621 KKKKKKKKK 1629
++ ++++K
Sbjct: 125 EENRREQKI 133
>gnl|CDD|226513 COG4026, COG4026, Uncharacterized protein containing TOPRIM domain,
potential nuclease [General function prediction only].
Length = 290
Score = 30.6 bits (69), Expect = 6.9
Identities = 14/64 (21%), Positives = 31/64 (48%)
Query: 759 KAKLAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKL 818
K KL E + + +++L A+ V +L+ L E ++ + K+L ++ K++
Sbjct: 141 KEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRW 200
Query: 819 ERAE 822
+ E
Sbjct: 201 DELE 204
>gnl|CDD|221244 pfam11818, DUF3340, C-terminal domain of tail specific protease
(DUF3340). This presumed domain is found at the
C-terminus of tail specific proteases. Its function is
unknown. This family is found in bacteria and eukaryotes.
This presumed domain is typically between 88 to 187 amino
acids in length.
Length = 139
Score = 29.5 bits (67), Expect = 7.0
Identities = 9/44 (20%), Positives = 26/44 (59%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKK 1624
E ++K ++++ +KK+ K++ +++K ++ K K K++
Sbjct: 77 EAERKAEREEDEKKRLKRENERRKALGEEPLKSLDDLPKDKEEP 120
>gnl|CDD|240709 cd12263, RRM_ABT1_like, RNA recognition motif found in activator of
basal transcription 1 (ABT1) and similar proteins. This
subfamily corresponds to the RRM of novel nuclear
proteins termed ABT1 and its homologous counterpart,
pre-rRNA-processing protein ESF2 (eighteen S factor 2),
from yeast. ABT1 associates with the TATA-binding protein
(TBP) and enhances basal transcription activity of class
II promoters. Meanwhile, ABT1 could be a transcription
cofactor that can bind to DNA in a sequence-independent
manner. The yeast ABT1 homolog, ESF2, is a component of
90S preribosomes and 5' ETS-based RNPs. It is previously
identified as a putative partner of the TATA-element
binding protein. However, it is primarily localized to
the nucleolus and physically associates with pre-rRNA
processing factors. ESF2 may play a role in ribosome
biogenesis. It is required for normal pre-rRNA
processing, as well as for SSU processome assembly and
function. Both ABT1 and ESF2 contain an RNA recognition
motif (RRM), also termed RBD (RNA binding domain) or RNP
(ribonucleoprotein domain). .
Length = 98
Score = 28.7 bits (65), Expect = 7.2
Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 5/37 (13%)
Query: 1586 KKKKKKKKKKKKKKKKKKKKKYKK-----KKKKKKKK 1617
+ + K+K++KKK KKKK+ + + KK K+
Sbjct: 33 QPEDPAKRKRRKKKGGNKKKKFTEGWVEFEDKKVAKR 69
>gnl|CDD|218771 pfam05835, Synaphin, Synaphin protein. This family consists of
several eukaryotic synaphin 1 and 2 proteins.
Synaphin/complexin is a cytosolic protein that
preferentially binds to syntaxin within the SNARE
complex. Synaphin promotes SNAREs to form precomplexes
that oligomerise into higher order structures. A peptide
from the central, syntaxin binding domain of synaphin
competitively inhibits these two proteins from
interacting and prevents SNARE complexes from
oligomerising. It is thought that oligomerisation of
SNARE complexes into a higher order structure creates a
SNARE scaffold for efficient, regulated fusion of
synaptic vesicles. Synaphin promotes neuronal exocytosis
by promoting interaction between the complementary
syntaxin and synaptobrevin transmembrane regions that
reside in opposing membranes prior to fusion.
Length = 139
Score = 29.5 bits (66), Expect = 7.4
Identities = 11/69 (15%), Positives = 39/69 (56%)
Query: 1577 EGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSR 1636
E G++ +++ ++ ++ ++ ++++K K++K +++++ ++ + K KKK++
Sbjct: 24 EDEGDESDAEEEDEEIQEALREAEEERKAKHRKMEEEREVMRQGIRDKYGIKKKEEDEEE 83
Query: 1637 EGGGGGEKE 1645
E+E
Sbjct: 84 PQAAAEEEE 92
>gnl|CDD|149741 pfam08775, ParB, ParB family. ParB is a component of the par system
which mediates accurate DNA partition during cell
division. It recognises A-box and B-box DNA motifs. ParB
forms an asymmetric dimer with 2 extended
helix-turn-helix (HTH) motifs that bind to A-boxes. The
HTH motifs emanate from a beta sheet coiled coil DNA
binding module. Both DNA binding elements are free to
rotate around a flexible linker, this enables them to
bind to complex arrays of A- and B-box elements on
adjacent DNA arms of the looped partition site.
Length = 127
Score = 29.2 bits (66), Expect = 7.4
Identities = 11/41 (26%), Positives = 17/41 (41%)
Query: 1584 KKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKK 1624
K+ K K K K K ++ K K +K+ K +K
Sbjct: 61 TKELKLLKDKPVKDKAVVTPLAEFDDKDKFARKRVDPKGRK 101
>gnl|CDD|218452 pfam05130, FlgN, FlgN protein. This family includes the FlgN
protein and export chaperone involved in flagellar
synthesis.
Length = 140
Score = 29.3 bits (66), Expect = 7.6
Identities = 16/63 (25%), Positives = 29/63 (46%)
Query: 762 LAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKLERA 821
L E + + Q+E+L +R QL LG + + +EL + + K+ LE
Sbjct: 38 LTEEKQELLAQLEQLEEERQQLLAELGLSPGPAGLSELLAAEDEELRELWQELKELLEEL 97
Query: 822 EKL 824
++L
Sbjct: 98 QEL 100
>gnl|CDD|234701 PRK00252, alaS, alanyl-tRNA synthetase; Reviewed.
Length = 865
Score = 30.8 bits (71), Expect = 7.6
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Query: 776 LNSKRAQLATVLGKLQALRDELAQK----SKDKKELEDQIELCKQKLERAE 822
LN + A L + L+A EL ++ ++ KELE ++E K KL A
Sbjct: 696 LNEQEALLKELAALLKAKPSELPERVEALLEELKELEKELEQLKAKLAAAA 746
>gnl|CDD|130217 TIGR01147, V_ATP_synt_G, vacuolar ATP synthase, subunit G. This
model describes the vacuolar ATP synthase G subunit in
eukaryotes and includes members from diverse groups e.g.,
fungi, plants, parasites etc. V-ATPases are multi-subunit
enzymes composed of two functional domains: A
transmembrane Vo domain and a peripheral catalytic domain
V1. The G subunit is one of the subunits of the catalytic
domain. V-ATPases are responsible for the acidification
of endosomes and lysosomes, which are part of the central
vacuolar system [Energy metabolism, ATP-proton motive
force interconversion].
Length = 113
Score = 29.0 bits (65), Expect = 7.9
Identities = 20/80 (25%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 1572 LLARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKK-KKKKKKKKKKKKKKKK 1630
L A + + + +K+K K+ K+ K++ +K+ +KYK++++K+ K+ + K ++
Sbjct: 12 LQAEKRAAEKVSEARKRKTKRLKQAKEEAQKEVEKYKQQREKEFKEFEAKHLGGNGAAEE 71
Query: 1631 KKKYSREGGGGGEKELVQKN 1650
K + + K+ VQKN
Sbjct: 72 KAEAETQAKIREIKKAVQKN 91
>gnl|CDD|185613 PTZ00433, PTZ00433, tyrosine aminotransferase; Provisional.
Length = 412
Score = 30.5 bits (69), Expect = 7.9
Identities = 21/79 (26%), Positives = 29/79 (36%), Gaps = 20/79 (25%)
Query: 932 WPLLIDPQGQANKWLKNVEK------GNLSVVKLTDATLLRTLERA-----------IRT 974
W LL+DP G +L +++ G SVV+ A L L +
Sbjct: 260 WLLLVDPHGNGGDFLDGMKRLGMLVCGPCSVVQ---AALGEALLNTPQEHLEQIVAKLEE 316
Query: 975 GTAVLLENIQETIDSSLEP 993
G VL +I E I S
Sbjct: 317 GAMVLYNHIGECIGLSPTM 335
>gnl|CDD|221466 pfam12220, U1snRNP70_N, U1 small nuclear ribonucleoprotein of 70kDa
MW N terminal. This domain is found in eukaryotes. This
domain is about 90 amino acids in length. This domain is
found associated with pfam00076. This domain is part of
U1 snRNP, which is the pre-mRNA binding protein of the
penta-snRNP spliceosome complex. It extends over a
distance of 180 A from its RNA binding domain, wraps
around the core domain of U1 snRNP consisting of the
seven Sm proteins and finally contacts U1-C, which is
crucial for 5'-splice-site recognition.
Length = 94
Score = 28.4 bits (64), Expect = 8.0
Identities = 10/40 (25%), Positives = 25/40 (62%)
Query: 1588 KKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKK 1627
K K + + + +K+ ++K++KK+K +KK +++ K+
Sbjct: 48 KDYKDEPPPEPTETWLEKREREKREKKEKLEKKLEEELKE 87
>gnl|CDD|233309 TIGR01200, GLPGLI, GLPGLI family protein. This protein family was
first noted as a paralogous set in Porphyromonas
gingivalis, but it is more widely distributed among the
Bacteroidetes. The protein family is now renamed GLPGLI
after its best-conserved motif.
Length = 227
Score = 30.0 bits (68), Expect = 8.2
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 1584 KKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKK 1615
+ K KK KK ++K+KK K+K
Sbjct: 196 ELNPTPIIIIPKPKKGKKISREKFKKIKEKYY 227
>gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit;
Provisional.
Length = 305
Score = 30.4 bits (69), Expect = 8.4
Identities = 15/38 (39%), Positives = 25/38 (65%)
Query: 1593 KKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKK 1630
K +K KKK K+K+K +K +K + KK KK K+ +++
Sbjct: 69 KDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRR 106
>gnl|CDD|224030 COG1105, FruK, Fructose-1-phosphate kinase and related
fructose-6-phosphate kinase (PfkB) [Carbohydrate
transport and metabolism].
Length = 310
Score = 30.3 bits (69), Expect = 8.5
Identities = 32/137 (23%), Positives = 56/137 (40%), Gaps = 20/137 (14%)
Query: 702 YEFNLSDLNISMKQLQMFLNDYT-TIPFDALIYLTASIPFQVLAMEVYDRVIKIVGPKKA 760
E N IS +L+ FL + D ++ L+ S+P + + Y +I+I+ + A
Sbjct: 102 TEINFPGPEISEAELEQFLEQLKALLESDDIVVLSGSLP-PGVPPDAYAELIRILRQQGA 160
Query: 761 KLAEAEADYAVQMEKLNSKRAQLATVLGKLQAL----RDELAQK-SKDKKELEDQIELCK 815
K+ L++ L L L R+EL ++ LED I+ +
Sbjct: 161 KVI------------LDTSGEALLAALEAKPWLIKPNREELEALFGRELTTLEDVIKAAR 208
Query: 816 QKLER-AEKLIGGLGGE 831
+ L E +I LG +
Sbjct: 209 ELLAEGIENVIVSLGAD 225
>gnl|CDD|238558 cd01138, FeuA, Periplasmic binding protein FeuA. These proteins have
predicted to function as initial receptors in ABC
transport of metal ions in some eubacterial species.
They belong to the TroA superfamily of periplasmic metal
binding proteins that share a distinct fold and ligand
binding mechanism. A typical TroA protein is comprised of
two globular subdomains connected by a single helix and
can bind their ligands in the cleft between these
domains.
Length = 248
Score = 30.0 bits (68), Expect = 8.6
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 1596 KKKKKKKKKKKYKKKKKKKKKKKKKKKKKKK 1626
K+ + +K YK+K K+ K+K KKK K
Sbjct: 112 KEDEAEKWLADYKQKAKEAKEKIKKKLGNDK 142
>gnl|CDD|153277 cd07593, BAR_MUG137_fungi, The Bin/Amphiphysin/Rvs (BAR) domain of
Schizosaccharomyces pombe Meiotically Up-regulated Gene
137 protein and similar proteins. BAR domains are
dimerization, lipid binding and curvature sensing
modules found in many different proteins with diverse
functions including organelle biogenesis, membrane
trafficking or remodeling, and cell division and
migration. This subfamily is composed predominantly of
uncharacterized fungal proteins with similarity to
Schizosaccharomyces pombe Meiotically Up-regulated Gene
137 protein (MUG137), which may play a role in meiosis
and sporulation in fission yeast. MUG137 contains an
N-terminal BAR domain and a C-terminal SH3 domain,
similar to endophilins. Endophilins play roles in
synaptic vesicle formation, virus budding, mitochondrial
morphology maintenance, receptor-mediated endocytosis
inhibition, and endosomal sorting. BAR domains form
dimers that bind to membranes, induce membrane bending
and curvature, and may also be involved in
protein-protein interactions.
Length = 215
Score = 30.0 bits (68), Expect = 8.6
Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 8/61 (13%)
Query: 762 LAEAEADYAVQMEKLNSKRAQLATVLGKLQALRDELAQKSKDKKELEDQIELCKQKLERA 821
LAE + +Y +KL S+R L K Q + K+ LE+++ K K E +
Sbjct: 110 LAEMK-EYHSARKKLESRRLAYDAALTKSQKAK-------KEDSRLEEELRRAKAKYEES 161
Query: 822 E 822
Sbjct: 162 S 162
>gnl|CDD|201461 pfam00829, Ribosomal_L21p, Ribosomal prokaryotic L21 protein.
Length = 96
Score = 28.2 bits (64), Expect = 8.7
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 1588 KKKKKKKKKKKKKKKKKKKYKKKK 1611
+ + KK K K++K Y+KK+
Sbjct: 64 LEHGRGKKVIVFKYKRRKNYRKKQ 87
>gnl|CDD|235638 PRK05896, PRK05896, DNA polymerase III subunits gamma and tau;
Validated.
Length = 605
Score = 30.6 bits (69), Expect = 8.8
Identities = 22/128 (17%), Positives = 40/128 (31%), Gaps = 13/128 (10%)
Query: 1498 SMNTVLKQELIRYNRLTVIIKKSLQEVRQAVKGLIVMSKELEEINTSIMFGKIPQAWASK 1557
S+ LK + + + + K + ++ + E T I +
Sbjct: 338 SLINRLKASVNQVFEFEIYLYKIINANPDKLENKKIEISIKPEKKTINNSQIITTKKINI 397
Query: 1558 SYPSLKPLGSYIVDLLARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKK 1617
S K V K K KKK + K++ K ++ +K+ K
Sbjct: 398 VEESNKN----SVHF---------DTLYKTKIFYHKKKINQNNKEQDIKKEELLEKEFVK 444
Query: 1618 KKKKKKKK 1625
K +K K
Sbjct: 445 KSEKIPKN 452
>gnl|CDD|215590 PLN03123, PLN03123, poly [ADP-ribose] polymerase; Provisional.
Length = 981
Score = 30.5 bits (69), Expect = 8.9
Identities = 17/70 (24%), Positives = 26/70 (37%)
Query: 1560 PSLKPLGSYIVDLLARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKK 1619
P +K S + A + KK K+KK K KK K + +KK
Sbjct: 181 PLVKKSPSEAKEEKAEERKQESKKGAKRKKDASGDDKSKKAKTDRDVSTSTAASQKKSSD 240
Query: 1620 KKKKKKKKKK 1629
+ K + + K
Sbjct: 241 LESKLEAQSK 250
>gnl|CDD|198139 smart01071, CDC37_N, Cdc37 N terminal kinase binding. Cdc37 is a
molecular chaperone required for the activity of numerous
eukaryotic protein kinases. This domain corresponds to
the N terminal domain which binds predominantly to
protein kinases.and is found N terminal to the Hsp (Heat
shocked protein) 90-binding domain. Expression of a
construct consisting of only the N-terminal domain of
Saccharomyces pombe Cdc37 results in cellular viability.
This indicates that interactions with the cochaperone
Hsp90 may not be essential for Cdc37 function.
Length = 154
Score = 29.3 bits (66), Expect = 8.9
Identities = 15/52 (28%), Positives = 33/52 (63%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKK 1632
E + + KK+ ++ + ++ KK++ K KK++K+ +KK + +K++KKK
Sbjct: 90 ELQDQLKKELEEANGDSEGLLEELKKHRDKLKKEQKELRKKLDELEKEEKKK 141
>gnl|CDD|218734 pfam05758, Ycf1, Ycf1. The chloroplast genomes of most higher plants
contain two giant open reading frames designated ycf1 and
ycf2. Although the function of Ycf1 is unknown, it is
known to be an essential gene.
Length = 832
Score = 30.7 bits (70), Expect = 9.0
Identities = 15/41 (36%), Positives = 28/41 (68%)
Query: 1587 KKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKK 1627
K K+ + +KKK+ K Y ++K KK++KK+K K+++K+
Sbjct: 638 KIKQIFRNWIEKKKEFKILDYTEEKTKKEEKKEKNKREEKE 678
>gnl|CDD|218601 pfam05477, SURF2, Surfeit locus protein 2 (SURF2). Surfeit locus
protein 2 is part of a group of at least six sequence
unrelated genes (Surf-1 to Surf-6). The six Surfeit genes
have been classified as housekeeping genes, being
expressed in all tissue types tested and not containing a
TATA box in their promoter region. The exact function of
SURF2 is unknown.
Length = 244
Score = 29.9 bits (67), Expect = 9.0
Identities = 13/47 (27%), Positives = 23/47 (48%)
Query: 1577 EGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKK 1623
E E + + + + ++K+ KK+ KK+KK KKK + K
Sbjct: 198 ETDDEDEMEVESPELQQKRSKKQSGSLTKKFKKNHKKKGPFRFSSVK 244
>gnl|CDD|184041 PRK13413, mpi, multiple promoter invertase; Provisional.
Length = 200
Score = 29.7 bits (67), Expect = 9.1
Identities = 15/47 (31%), Positives = 22/47 (46%)
Query: 1573 LARREGRGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKK 1619
LAR++ G + K KK K K++K KK K K + +K
Sbjct: 135 LARKKAEGVTLGRPKGSTPKKYKLTGKEEKIKKLLDKGTSKSEIARK 181
>gnl|CDD|216249 pfam01025, GrpE, GrpE.
Length = 165
Score = 29.5 bits (67), Expect = 9.1
Identities = 8/61 (13%), Positives = 40/61 (65%), Gaps = 4/61 (6%)
Query: 1581 EKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKK----KKKKKKKKKKKKKYSR 1636
E+K+++++ + +++ +++ ++ +++ ++ K + + + +K+ ++++++ KKY+
Sbjct: 1 EEKEEEEELEDEEEALEEELEELEEEIEELKDRLLRLLAEFENYRKRTEREREEAKKYAI 60
Query: 1637 E 1637
E
Sbjct: 61 E 61
>gnl|CDD|225578 COG3036, COG3036, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 66
Score = 27.5 bits (61), Expect = 9.2
Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 8/49 (16%)
Query: 1604 KKKYKKKKKKKKKKKKK--------KKKKKKKKKKKKKYSREGGGGGEK 1644
KKY+ K K K +++ +KKKK K Y R+ G K
Sbjct: 2 SKKYQHTKGVIKDNALKALVHDPLFRQRVEKKKKGKGSYQRKAKHKGRK 50
>gnl|CDD|221012 pfam11169, DUF2956, Protein of unknown function (DUF2956). This
family of proteins with unknown function appears to be
restricted to Gammaproteobacteria.
Length = 103
Score = 28.4 bits (64), Expect = 9.3
Identities = 9/25 (36%), Positives = 18/25 (72%)
Query: 1607 YKKKKKKKKKKKKKKKKKKKKKKKK 1631
YKK++K K ++ K +K++ K K++
Sbjct: 39 YKKQQKAKAREADKARKQQLKAKQR 63
>gnl|CDD|223624 COG0550, TopA, Topoisomerase IA [DNA replication, recombination, and
repair].
Length = 570
Score = 30.3 bits (69), Expect = 9.4
Identities = 12/45 (26%), Positives = 20/45 (44%)
Query: 1579 RGEKKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKK 1623
+ KK+ + K K + ++ K K K K +KK KK+
Sbjct: 214 TEIEGKKEGRLKDKDEAEEIVNKLKGKPAKVVSVEKKPKKRSPPP 258
>gnl|CDD|138835 PRK12279, PRK12279, 50S ribosomal protein L22/unknown domain fusion
protein; Provisional.
Length = 311
Score = 30.0 bits (67), Expect = 9.6
Identities = 17/64 (26%), Positives = 29/64 (45%)
Query: 1582 KKKKKKKKKKKKKKKKKKKKKKKKKYKKKKKKKKKKKKKKKKKKKKKKKKKKYSREGGGG 1641
K KK KK + K K + KK K K + K +K + + K++++ K +
Sbjct: 123 KAKKSKKPLPVEPKAKVETKKVAKPSKVEVKPVEKDENVDPELLKREQQVLKVVEKTASQ 182
Query: 1642 GEKE 1645
E+E
Sbjct: 183 KEEE 186
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.135 0.390
Gapped
Lambda K H
0.267 0.0677 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 84,004,064
Number of extensions: 8579357
Number of successful extensions: 51669
Number of sequences better than 10.0: 1
Number of HSP's gapped: 34494
Number of HSP's successfully gapped: 3134
Length of query: 1650
Length of database: 10,937,602
Length adjustment: 110
Effective length of query: 1540
Effective length of database: 6,058,662
Effective search space: 9330339480
Effective search space used: 9330339480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 66 (29.3 bits)