BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4725
(457 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1N3A|A Chain A, Structural And Biochemical Exploration Of A Critical Amino
Acid In Human 8-Oxoguanine Glycosylase
Length = 317
Score = 170 bits (430), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 109/329 (33%), Positives = 159/329 (48%), Gaps = 48/329 (14%)
Query: 10 LSGKILCPAIEXXXXXXXXXXXXFRWKQLTSDEKKLGNRFQGVFKECVWTLWADPSYLHY 69
L I CP E FRW++ + + GV + VWTL LH
Sbjct: 14 LWASIPCPRSELRLDLVLPSGQSFRWREQSP------AHWSGVLADQVWTLTQTEEQLHC 67
Query: 70 QVFSQHKLNANSVET----MLKEYFRLDENLPELYAEWSNRDAFFRQTCGDFVGIRMLNQ 125
V+ K A+ +++YF+LD L +LY W + D+ F++ F G+R+L Q
Sbjct: 68 TVYRGDKSQASRPTPDELEAVRKYFQLDVTLAQLYHHWGSVDSHFQEVAQKFQGVRLLRQ 127
Query: 126 DLTENIFSFLCSSNNNIARISGMIDKMCKEYGTLICTLDSDGNLVGDCEKGRSHAKSCPA 185
D E +FSF+CSSNNNIARI+GM++++C+ +G + LD
Sbjct: 128 DPIECLFSFICSSNNNIARITGMVERLCQAFGPRLIQLDD-------------------- 167
Query: 186 VTKFFAFPSIDALARPAVEAKLRQLGFGYRAKFIQKSAEYII-QGGGESWLERLGGKSYE 244
+ FPS+ ALA P VEA LR+LG GYRA+++ SA I+ + GG +WL++L SYE
Sbjct: 168 -VTYHGFPSLQALAGPEVEAHLRKLGLGYRARYVSASARAILEEQGGLAWLQQLRESSYE 226
Query: 245 EAREELQRLPGIGAKVGDGV------------FKEHVWTLWADPSYLHYQVYSQHKLNTN 292
EA + L LPG+G KV D + + H+W + A Y + SQ K +
Sbjct: 227 EAHKALCILPGVGTKVADCICLMALDKPQAVPVQVHMWHI-AQRDYSWHPTTSQAKGPSP 285
Query: 293 SVETMLKEYFRLDENLPELYAEWSNRDAF 321
L +FR +L YA W+ F
Sbjct: 286 QTNKELGNFFR---SLWGPYAGWAQAVLF 311
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 49/79 (62%), Gaps = 2/79 (2%)
Query: 327 GDFVADCICLMSLSHLQAVPVDTHVYQIACNHYHFQKSTS--KTLTPAVYNQIRAFFADK 384
G VADCICLM+L QAVPV H++ IA Y + +TS K +P ++ FF
Sbjct: 239 GTKVADCICLMALDKPQAVPVQVHMWHIAQRDYSWHPTTSQAKGPSPQTNKELGNFFRSL 298
Query: 385 FGKYAGWAHSILFCADLKK 403
+G YAGWA ++LF ADL++
Sbjct: 299 WGPYAGWAQAVLFSADLRQ 317
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 263 GVFKEHVWTLWADPSYLHYQVY----SQHKLNTNSVETMLKEYFRLDENLPELYAEWSNR 318
GV + VWTL LH VY SQ T +++YF+LD L +LY W +
Sbjct: 49 GVLADQVWTLTQTEEQLHCTVYRGDKSQASRPTPDELEAVRKYFQLDVTLAQLYHHWGSV 108
Query: 319 DAFFRQTCGDF 329
D+ F++ F
Sbjct: 109 DSHFQEVAQKF 119
>pdb|1N39|A Chain A, Structural And Biochemical Exploration Of A Critical Amino
Acid In Human 8-Oxoguanine Glycosylase
pdb|1M3Q|A Chain A, Crystal Structure Of Hogg1 D268e Mutant With Base-Excised
Dna And 8-Aminoguanine
pdb|1M3H|A Chain A, Crystal Structure Of Hogg1 D268e Mutant With Product
Oligonucleotide
Length = 317
Score = 170 bits (430), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 109/329 (33%), Positives = 159/329 (48%), Gaps = 48/329 (14%)
Query: 10 LSGKILCPAIEXXXXXXXXXXXXFRWKQLTSDEKKLGNRFQGVFKECVWTLWADPSYLHY 69
L I CP E FRW++ + + GV + VWTL LH
Sbjct: 14 LWASIPCPRSELRLDLVLPSGQSFRWREQSP------AHWSGVLADQVWTLTQTEEQLHC 67
Query: 70 QVFSQHKLNANSVET----MLKEYFRLDENLPELYAEWSNRDAFFRQTCGDFVGIRMLNQ 125
V+ K A+ +++YF+LD L +LY W + D+ F++ F G+R+L Q
Sbjct: 68 TVYRGDKSQASRPTPDELEAVRKYFQLDVTLAQLYHHWGSVDSHFQEVAQKFQGVRLLRQ 127
Query: 126 DLTENIFSFLCSSNNNIARISGMIDKMCKEYGTLICTLDSDGNLVGDCEKGRSHAKSCPA 185
D E +FSF+CSSNNNIARI+GM++++C+ +G + LD
Sbjct: 128 DPIECLFSFICSSNNNIARITGMVERLCQAFGPRLIQLDD-------------------- 167
Query: 186 VTKFFAFPSIDALARPAVEAKLRQLGFGYRAKFIQKSAEYII-QGGGESWLERLGGKSYE 244
+ FPS+ ALA P VEA LR+LG GYRA+++ SA I+ + GG +WL++L SYE
Sbjct: 168 -VTYHGFPSLQALAGPEVEAHLRKLGLGYRARYVSASARAILEEQGGLAWLQQLRESSYE 226
Query: 245 EAREELQRLPGIGAKVGDGV------------FKEHVWTLWADPSYLHYQVYSQHKLNTN 292
EA + L LPG+G KV D + + H+W + A Y + SQ K +
Sbjct: 227 EAHKALCILPGVGTKVADCICLMALDKPQAVPVEVHMWHI-AQRDYSWHPTTSQAKGPSP 285
Query: 293 SVETMLKEYFRLDENLPELYAEWSNRDAF 321
L +FR +L YA W+ F
Sbjct: 286 QTNKELGNFFR---SLWGPYAGWAQAVLF 311
Score = 75.1 bits (183), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 50/79 (63%), Gaps = 2/79 (2%)
Query: 327 GDFVADCICLMSLSHLQAVPVDTHVYQIACNHYHFQKSTS--KTLTPAVYNQIRAFFADK 384
G VADCICLM+L QAVPV+ H++ IA Y + +TS K +P ++ FF
Sbjct: 239 GTKVADCICLMALDKPQAVPVEVHMWHIAQRDYSWHPTTSQAKGPSPQTNKELGNFFRSL 298
Query: 385 FGKYAGWAHSILFCADLKK 403
+G YAGWA ++LF ADL++
Sbjct: 299 WGPYAGWAQAVLFSADLRQ 317
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 263 GVFKEHVWTLWADPSYLHYQVY----SQHKLNTNSVETMLKEYFRLDENLPELYAEWSNR 318
GV + VWTL LH VY SQ T +++YF+LD L +LY W +
Sbjct: 49 GVLADQVWTLTQTEEQLHCTVYRGDKSQASRPTPDELEAVRKYFQLDVTLAQLYHHWGSV 108
Query: 319 DAFFRQTCGDF 329
D+ F++ F
Sbjct: 109 DSHFQEVAQKF 119
>pdb|1KO9|A Chain A, Native Structure Of The Human 8-Oxoguanine Dna Glycosylase
Hogg1
Length = 345
Score = 170 bits (430), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 109/329 (33%), Positives = 158/329 (48%), Gaps = 48/329 (14%)
Query: 10 LSGKILCPAIEXXXXXXXXXXXXFRWKQLTSDEKKLGNRFQGVFKECVWTLWADPSYLHY 69
L I CP E FRW++ + + GV + VWTL LH
Sbjct: 22 LWASIPCPRSELRLDLVLPSGQSFRWREQSPAH------WSGVLADQVWTLTQTEEQLHC 75
Query: 70 QVFSQHKLNANSVET----MLKEYFRLDENLPELYAEWSNRDAFFRQTCGDFVGIRMLNQ 125
V+ K A+ +++YF+LD L +LY W + D+ F++ F G+R+L Q
Sbjct: 76 TVYRGDKSQASRPTPDELEAVRKYFQLDVTLAQLYHHWGSVDSHFQEVAQKFQGVRLLRQ 135
Query: 126 DLTENIFSFLCSSNNNIARISGMIDKMCKEYGTLICTLDSDGNLVGDCEKGRSHAKSCPA 185
D E +FSF+CSSNNNIARI+GM++++C+ +G + LD
Sbjct: 136 DPIECLFSFICSSNNNIARITGMVERLCQAFGPRLIQLDD-------------------- 175
Query: 186 VTKFFAFPSIDALARPAVEAKLRQLGFGYRAKFIQKSAEYII-QGGGESWLERLGGKSYE 244
+ FPS+ ALA P VEA LR+LG GYRA+++ SA I+ + GG +WL++L SYE
Sbjct: 176 -VTYHGFPSLQALAGPEVEAHLRKLGLGYRARYVSASARAILEEQGGLAWLQQLRESSYE 234
Query: 245 EAREELQRLPGIGAKVGDGV------------FKEHVWTLWADPSYLHYQVYSQHKLNTN 292
EA + L LPG+G KV D + H+W + A Y + SQ K +
Sbjct: 235 EAHKALCILPGVGTKVADCICLMALDKPQAVPVDVHMWHI-AQRDYSWHPTTSQAKGPSP 293
Query: 293 SVETMLKEYFRLDENLPELYAEWSNRDAF 321
L +FR +L YA W+ F
Sbjct: 294 QTNKELGNFFR---SLWGPYAGWAQAVLF 319
Score = 82.4 bits (202), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 42/96 (43%), Positives = 58/96 (60%), Gaps = 4/96 (4%)
Query: 327 GDFVADCICLMSLSHLQAVPVDTHVYQIACNHYHFQKSTS--KTLTPAVYNQIRAFFADK 384
G VADCICLM+L QAVPVD H++ IA Y + +TS K +P ++ FF
Sbjct: 247 GTKVADCICLMALDKPQAVPVDVHMWHIAQRDYSWHPTTSQAKGPSPQTNKELGNFFRSL 306
Query: 385 FGKYAGWAHSILFCADLKKFQAKPGEEKVGKRESGT 420
+G YAGWA ++LF ADL+ Q++ +E KR G+
Sbjct: 307 WGPYAGWAQAVLFSADLR--QSRHAQEPPAKRRKGS 340
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 263 GVFKEHVWTLWADPSYLHYQVY----SQHKLNTNSVETMLKEYFRLDENLPELYAEWSNR 318
GV + VWTL LH VY SQ T +++YF+LD L +LY W +
Sbjct: 57 GVLADQVWTLTQTEEQLHCTVYRGDKSQASRPTPDELEAVRKYFQLDVTLAQLYHHWGSV 116
Query: 319 DAFFRQTCGDF 329
D+ F++ F
Sbjct: 117 DSHFQEVAQKF 127
>pdb|1N3C|A Chain A, Structural And Biochemical Exploration Of A Critical Amino
Acid In Human 8-oxoguanine Glycosylase
Length = 317
Score = 169 bits (429), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 109/329 (33%), Positives = 158/329 (48%), Gaps = 48/329 (14%)
Query: 10 LSGKILCPAIEXXXXXXXXXXXXFRWKQLTSDEKKLGNRFQGVFKECVWTLWADPSYLHY 69
L I CP E FRW++ + + GV + VWTL LH
Sbjct: 14 LWASIPCPRSELRLDLVLPSGQSFRWREQSP------AHWSGVLADQVWTLTQTEEQLHC 67
Query: 70 QVFSQHKLNANSVET----MLKEYFRLDENLPELYAEWSNRDAFFRQTCGDFVGIRMLNQ 125
V+ K A+ +++YF+LD L +LY W + D+ F++ F G+R+L Q
Sbjct: 68 TVYRGDKSQASRPTPDELEAVRKYFQLDVTLAQLYHHWGSVDSHFQEVAQKFQGVRLLRQ 127
Query: 126 DLTENIFSFLCSSNNNIARISGMIDKMCKEYGTLICTLDSDGNLVGDCEKGRSHAKSCPA 185
D E +FSF+CSSNNNIARI+GM++++C+ +G + LD
Sbjct: 128 DPIECLFSFICSSNNNIARITGMVERLCQAFGPRLIQLDD-------------------- 167
Query: 186 VTKFFAFPSIDALARPAVEAKLRQLGFGYRAKFIQKSAEYII-QGGGESWLERLGGKSYE 244
+ FPS+ ALA P VEA LR+LG GYRA+++ SA I+ + GG +WL++L SYE
Sbjct: 168 -VTYHGFPSLQALAGPEVEAHLRKLGLGYRARYVSASARAILEEQGGLAWLQQLRESSYE 226
Query: 245 EAREELQRLPGIGAKVGDGV------------FKEHVWTLWADPSYLHYQVYSQHKLNTN 292
EA + L LPG+G KV D + H+W + A Y + SQ K +
Sbjct: 227 EAHKALCILPGVGTKVADCICLMALDKPQAVPVNVHMWHI-AQRDYSWHPTTSQAKGPSP 285
Query: 293 SVETMLKEYFRLDENLPELYAEWSNRDAF 321
L +FR +L YA W+ F
Sbjct: 286 QTNKELGNFFR---SLWGPYAGWAQAVLF 311
Score = 75.1 bits (183), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 50/79 (63%), Gaps = 2/79 (2%)
Query: 327 GDFVADCICLMSLSHLQAVPVDTHVYQIACNHYHFQKSTS--KTLTPAVYNQIRAFFADK 384
G VADCICLM+L QAVPV+ H++ IA Y + +TS K +P ++ FF
Sbjct: 239 GTKVADCICLMALDKPQAVPVNVHMWHIAQRDYSWHPTTSQAKGPSPQTNKELGNFFRSL 298
Query: 385 FGKYAGWAHSILFCADLKK 403
+G YAGWA ++LF ADL++
Sbjct: 299 WGPYAGWAQAVLFSADLRQ 317
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 263 GVFKEHVWTLWADPSYLHYQVY----SQHKLNTNSVETMLKEYFRLDENLPELYAEWSNR 318
GV + VWTL LH VY SQ T +++YF+LD L +LY W +
Sbjct: 49 GVLADQVWTLTQTEEQLHCTVYRGDKSQASRPTPDELEAVRKYFQLDVTLAQLYHHWGSV 108
Query: 319 DAFFRQTCGDF 329
D+ F++ F
Sbjct: 109 DSHFQEVAQKF 119
>pdb|1HU0|A Chain A, Crystal Structure Of An Hogg1-Dna Borohydride Trapped
Intermediate Complex
pdb|1LWV|A Chain A, Borohydride-Trapped Hogg1 Intermediate Structure Co-
Crystallized With 8-Aminoguanine
pdb|1LWW|A Chain A, Borohydride-Trapped Hogg1 Intermediate Structure Co-
Crystallized With 8-Bromoguanine
pdb|1LWY|A Chain A, Hogg1 Borohydride-Trapped Intermediate Without
8-Oxoguanine
Length = 324
Score = 169 bits (429), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 109/329 (33%), Positives = 158/329 (48%), Gaps = 48/329 (14%)
Query: 10 LSGKILCPAIEXXXXXXXXXXXXFRWKQLTSDEKKLGNRFQGVFKECVWTLWADPSYLHY 69
L I CP E FRW++ + + GV + VWTL LH
Sbjct: 19 LWASIPCPRSELRLDLVLPSGQSFRWREQSP------AHWSGVLADQVWTLTQTEEQLHC 72
Query: 70 QVFSQHKLNANSVET----MLKEYFRLDENLPELYAEWSNRDAFFRQTCGDFVGIRMLNQ 125
V+ K A+ +++YF+LD L +LY W + D+ F++ F G+R+L Q
Sbjct: 73 TVYRGDKSQASRPTPDELEAVRKYFQLDVTLAQLYHHWGSVDSHFQEVAQKFQGVRLLRQ 132
Query: 126 DLTENIFSFLCSSNNNIARISGMIDKMCKEYGTLICTLDSDGNLVGDCEKGRSHAKSCPA 185
D E +FSF+CSSNNNIARI+GM++++C+ +G + LD
Sbjct: 133 DPIECLFSFICSSNNNIARITGMVERLCQAFGPRLIQLDD-------------------- 172
Query: 186 VTKFFAFPSIDALARPAVEAKLRQLGFGYRAKFIQKSAEYII-QGGGESWLERLGGKSYE 244
+ FPS+ ALA P VEA LR+LG GYRA+++ SA I+ + GG +WL++L SYE
Sbjct: 173 -VTYHGFPSLQALAGPEVEAHLRKLGLGYRARYVSASARAILEEQGGLAWLQQLRESSYE 231
Query: 245 EAREELQRLPGIGAKVGDGV------------FKEHVWTLWADPSYLHYQVYSQHKLNTN 292
EA + L LPG+G KV D + H+W + A Y + SQ K +
Sbjct: 232 EAHKALCILPGVGTKVADCICLMALDKPQAVPVDVHMWHI-AQRDYSWHPTTSQAKGPSP 290
Query: 293 SVETMLKEYFRLDENLPELYAEWSNRDAF 321
L +FR +L YA W+ F
Sbjct: 291 QTNKELGNFFR---SLWGPYAGWAQAVLF 316
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 50/79 (63%), Gaps = 2/79 (2%)
Query: 327 GDFVADCICLMSLSHLQAVPVDTHVYQIACNHYHFQKSTS--KTLTPAVYNQIRAFFADK 384
G VADCICLM+L QAVPVD H++ IA Y + +TS K +P ++ FF
Sbjct: 244 GTKVADCICLMALDKPQAVPVDVHMWHIAQRDYSWHPTTSQAKGPSPQTNKELGNFFRSL 303
Query: 385 FGKYAGWAHSILFCADLKK 403
+G YAGWA ++LF ADL++
Sbjct: 304 WGPYAGWAQAVLFSADLRQ 322
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 263 GVFKEHVWTLWADPSYLHYQVY----SQHKLNTNSVETMLKEYFRLDENLPELYAEWSNR 318
GV + VWTL LH VY SQ T +++YF+LD L +LY W +
Sbjct: 54 GVLADQVWTLTQTEEQLHCTVYRGDKSQASRPTPDELEAVRKYFQLDVTLAQLYHHWGSV 113
Query: 319 DAFFRQTCGDF 329
D+ F++ F
Sbjct: 114 DSHFQEVAQKF 124
>pdb|1FN7|A Chain A, Coupling Of Damage Recognition And Catalysis By A Human
Base-Excision Dna Repair Protein
Length = 317
Score = 169 bits (429), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 109/329 (33%), Positives = 158/329 (48%), Gaps = 48/329 (14%)
Query: 10 LSGKILCPAIEXXXXXXXXXXXXFRWKQLTSDEKKLGNRFQGVFKECVWTLWADPSYLHY 69
L I CP E FRW++ + + GV + VWTL LH
Sbjct: 14 LWASIPCPRSELRLDLVLPSGQSFRWREQSP------AHWSGVLADQVWTLTQTEEQLHC 67
Query: 70 QVFSQHKLNANSVET----MLKEYFRLDENLPELYAEWSNRDAFFRQTCGDFVGIRMLNQ 125
V+ K A+ +++YF+LD L +LY W + D+ F++ F G+R+L Q
Sbjct: 68 TVYRGDKSQASRPTPDELEAVRKYFQLDVTLAQLYHHWGSVDSHFQEVAQKFQGVRLLRQ 127
Query: 126 DLTENIFSFLCSSNNNIARISGMIDKMCKEYGTLICTLDSDGNLVGDCEKGRSHAKSCPA 185
D E +FSF+CSSNNNIARI+GM++++C+ +G + LD
Sbjct: 128 DPIECLFSFICSSNNNIARITGMVERLCQAFGPRLIQLDD-------------------- 167
Query: 186 VTKFFAFPSIDALARPAVEAKLRQLGFGYRAKFIQKSAEYII-QGGGESWLERLGGKSYE 244
+ FPS+ ALA P VEA LR+LG GYRA+++ SA I+ + GG +WL++L SYE
Sbjct: 168 -VTYHGFPSLQALAGPEVEAHLRKLGLGYRARYVSASARAILEEQGGLAWLQQLRESSYE 226
Query: 245 EAREELQRLPGIGAKVGDGV------------FKEHVWTLWADPSYLHYQVYSQHKLNTN 292
EA + L LPG+G KV D + H+W + A Y + SQ K +
Sbjct: 227 EAHKALCILPGVGTKVADCICLMALDKPQAVPVDVHMWHI-AQRDYSWHPTTSQAKGPSP 285
Query: 293 SVETMLKEYFRLDENLPELYAEWSNRDAF 321
L +FR +L YA W+ F
Sbjct: 286 QTNKELGNFFR---SLWGPYAGWAQAVLF 311
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 50/79 (63%), Gaps = 2/79 (2%)
Query: 327 GDFVADCICLMSLSHLQAVPVDTHVYQIACNHYHFQKSTS--KTLTPAVYNQIRAFFADK 384
G VADCICLM+L QAVPVD H++ IA Y + +TS K +P ++ FF
Sbjct: 239 GTKVADCICLMALDKPQAVPVDVHMWHIAQRDYSWHPTTSQAKGPSPQTNKELGNFFRSL 298
Query: 385 FGKYAGWAHSILFCADLKK 403
+G YAGWA ++LF ADL++
Sbjct: 299 WGPYAGWAQAVLFSADLRQ 317
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 263 GVFKEHVWTLWADPSYLHYQVY----SQHKLNTNSVETMLKEYFRLDENLPELYAEWSNR 318
GV + VWTL LH VY SQ T +++YF+LD L +LY W +
Sbjct: 49 GVLADQVWTLTQTEEQLHCTVYRGDKSQASRPTPDELEAVRKYFQLDVTLAQLYHHWGSV 108
Query: 319 DAFFRQTCGDF 329
D+ F++ F
Sbjct: 109 DSHFQEVAQKF 119
>pdb|2NOE|A Chain A, Structure Of Catalytically Inactive G42a Human
8-Oxoguanine Glycosylase Complexed To 8-Oxoguanine Dna
Length = 325
Score = 169 bits (427), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 108/329 (32%), Positives = 158/329 (48%), Gaps = 48/329 (14%)
Query: 10 LSGKILCPAIEXXXXXXXXXXXXFRWKQLTSDEKKLGNRFQGVFKECVWTLWADPSYLHY 69
L I CP E FRW++ + + GV + VWTL LH
Sbjct: 20 LWASIPCPRSELRLDLVLPSAQSFRWREQSP------AHWSGVLADQVWTLTQTEEQLHC 73
Query: 70 QVFSQHKLNANSVET----MLKEYFRLDENLPELYAEWSNRDAFFRQTCGDFVGIRMLNQ 125
V+ K A+ +++YF+LD L +LY W + D+ F++ F G+R+L Q
Sbjct: 74 TVYRGDKSQASRPTPDELEAVRKYFQLDVTLAQLYHHWGSVDSHFQEVAQKFQGVRLLRQ 133
Query: 126 DLTENIFSFLCSSNNNIARISGMIDKMCKEYGTLICTLDSDGNLVGDCEKGRSHAKSCPA 185
D E +FSF+CSSNNNIARI+GM++++C+ +G + LD
Sbjct: 134 DPIECLFSFICSSNNNIARITGMVERLCQAFGPRLIQLDD-------------------- 173
Query: 186 VTKFFAFPSIDALARPAVEAKLRQLGFGYRAKFIQKSAEYII-QGGGESWLERLGGKSYE 244
+ FPS+ ALA P VEA LR+LG GYRA+++ SA I+ + GG +WL++L SYE
Sbjct: 174 -VTYHGFPSLQALAGPEVEAHLRKLGLGYRARYVSASARAILEEQGGLAWLQQLRESSYE 232
Query: 245 EAREELQRLPGIGAKVGDGV------------FKEHVWTLWADPSYLHYQVYSQHKLNTN 292
EA + L LPG+G +V D + H+W + A Y + SQ K +
Sbjct: 233 EAHKALCILPGVGTQVADCICLMALDKPQAVPVDVHMWHI-AQRDYSWHPTTSQAKGPSP 291
Query: 293 SVETMLKEYFRLDENLPELYAEWSNRDAF 321
L +FR +L YA W+ F
Sbjct: 292 QTNKELGNFFR---SLWGPYAGWAQAVLF 317
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 50/79 (63%), Gaps = 2/79 (2%)
Query: 327 GDFVADCICLMSLSHLQAVPVDTHVYQIACNHYHFQKSTS--KTLTPAVYNQIRAFFADK 384
G VADCICLM+L QAVPVD H++ IA Y + +TS K +P ++ FF
Sbjct: 245 GTQVADCICLMALDKPQAVPVDVHMWHIAQRDYSWHPTTSQAKGPSPQTNKELGNFFRSL 304
Query: 385 FGKYAGWAHSILFCADLKK 403
+G YAGWA ++LF ADL++
Sbjct: 305 WGPYAGWAQAVLFSADLRQ 323
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 263 GVFKEHVWTLWADPSYLHYQVY----SQHKLNTNSVETMLKEYFRLDENLPELYAEWSNR 318
GV + VWTL LH VY SQ T +++YF+LD L +LY W +
Sbjct: 55 GVLADQVWTLTQTEEQLHCTVYRGDKSQASRPTPDELEAVRKYFQLDVTLAQLYHHWGSV 114
Query: 319 DAFFRQTCGDF 329
D+ F++ F
Sbjct: 115 DSHFQEVAQKF 125
>pdb|1EBM|A Chain A, Crystal Structure Of The Human 8-Oxoguanine Glycosylase
(Hogg1) Bound To A Substrate Oligonucleotide
Length = 317
Score = 168 bits (425), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 108/329 (32%), Positives = 158/329 (48%), Gaps = 48/329 (14%)
Query: 10 LSGKILCPAIEXXXXXXXXXXXXFRWKQLTSDEKKLGNRFQGVFKECVWTLWADPSYLHY 69
L I CP E FRW++ + + GV + VWTL LH
Sbjct: 14 LWASIPCPRSELRLDLVLPSGQSFRWREQSP------AHWSGVLADQVWTLTQTEEQLHC 67
Query: 70 QVFSQHKLNANSVET----MLKEYFRLDENLPELYAEWSNRDAFFRQTCGDFVGIRMLNQ 125
V+ K A+ +++YF+LD L +LY W + D+ F++ F G+R+L Q
Sbjct: 68 TVYRGDKSQASRPTPDELEAVRKYFQLDVTLAQLYHHWGSVDSHFQEVAQKFQGVRLLRQ 127
Query: 126 DLTENIFSFLCSSNNNIARISGMIDKMCKEYGTLICTLDSDGNLVGDCEKGRSHAKSCPA 185
D E +FSF+CSSNNNIARI+GM++++C+ +G + LD
Sbjct: 128 DPIECLFSFICSSNNNIARITGMVERLCQAFGPRLIQLDD-------------------- 167
Query: 186 VTKFFAFPSIDALARPAVEAKLRQLGFGYRAKFIQKSAEYII-QGGGESWLERLGGKSYE 244
+ FPS+ ALA P VEA LR+LG GYRA+++ SA I+ + GG +WL++L SYE
Sbjct: 168 -VTYHGFPSLQALAGPEVEAHLRKLGLGYRARYVSASARAILEEQGGLAWLQQLRESSYE 226
Query: 245 EAREELQRLPGIGAKVGDGV------------FKEHVWTLWADPSYLHYQVYSQHKLNTN 292
EA + L LPG+G +V D + H+W + A Y + SQ K +
Sbjct: 227 EAHKALCILPGVGTQVADCICLMALDKPQAVPVDVHMWHI-AQRDYSWHPTTSQAKGPSP 285
Query: 293 SVETMLKEYFRLDENLPELYAEWSNRDAF 321
L +FR +L YA W+ F
Sbjct: 286 QTNKELGNFFR---SLWGPYAGWAQAVLF 311
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 50/79 (63%), Gaps = 2/79 (2%)
Query: 327 GDFVADCICLMSLSHLQAVPVDTHVYQIACNHYHFQKSTS--KTLTPAVYNQIRAFFADK 384
G VADCICLM+L QAVPVD H++ IA Y + +TS K +P ++ FF
Sbjct: 239 GTQVADCICLMALDKPQAVPVDVHMWHIAQRDYSWHPTTSQAKGPSPQTNKELGNFFRSL 298
Query: 385 FGKYAGWAHSILFCADLKK 403
+G YAGWA ++LF ADL++
Sbjct: 299 WGPYAGWAQAVLFSADLRQ 317
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 263 GVFKEHVWTLWADPSYLHYQVY----SQHKLNTNSVETMLKEYFRLDENLPELYAEWSNR 318
GV + VWTL LH VY SQ T +++YF+LD L +LY W +
Sbjct: 49 GVLADQVWTLTQTEEQLHCTVYRGDKSQASRPTPDELEAVRKYFQLDVTLAQLYHHWGSV 108
Query: 319 DAFFRQTCGDF 329
D+ F++ F
Sbjct: 109 DSHFQEVAQKF 119
>pdb|2NOZ|A Chain A, Structure Of Q315f Human 8-Oxoguanine Glycosylase Distal
Crosslink To 8-Oxoguanine Dna
Length = 325
Score = 168 bits (425), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 108/324 (33%), Positives = 156/324 (48%), Gaps = 48/324 (14%)
Query: 10 LSGKILCPAIEXXXXXXXXXXXXFRWKQLTSDEKKLGNRFQGVFKECVWTLWADPSYLHY 69
L I CP E FRW++ + + GV + VWTL LH
Sbjct: 20 LWASIPCPRSELRLDLVLPSGQSFRWREQSP------AHWSGVLADQVWTLTQTEEQLHC 73
Query: 70 QVFSQHKLNANSVET----MLKEYFRLDENLPELYAEWSNRDAFFRQTCGDFVGIRMLNQ 125
V+ K A+ +++YF+LD L +LY W + D+ F++ F G+R+L Q
Sbjct: 74 TVYRGDKSQASRPTPDELEAVRKYFQLDVTLAQLYHHWGSVDSHFQEVAQKFQGVRLLRQ 133
Query: 126 DLTENIFSFLCSSNNNIARISGMIDKMCKEYGTLICTLDSDGNLVGDCEKGRSHAKSCPA 185
D E +FSF+CSSNNNIARI+GM++++C+ +G + LD
Sbjct: 134 DPIECLFSFICSSNNNIARITGMVERLCQAFGPRLIQLDD-------------------- 173
Query: 186 VTKFFAFPSIDALARPAVEAKLRQLGFGYRAKFIQKSAEYII-QGGGESWLERLGGKSYE 244
+ FPS+ ALA P VEA LR+LG GYRA+++ SA I+ + GG +WL++L SYE
Sbjct: 174 -VTYHGFPSLQALAGPEVEAHLRKLGLGYRARYVSASARAILEEQGGLAWLQQLRESSYE 232
Query: 245 EAREELQRLPGIGAKVGDGV------------FKEHVWTLWADPSYLHYQVYSQHKLNTN 292
EA + L LPG+G KV D + H+W + A Y + SQ K
Sbjct: 233 EAHKALCILPGVGTKVADCICLMALDKPQAVPVDVHMWHI-AQRDYSWHPTTSQAKGPCP 291
Query: 293 SVETMLKEYFRLDENLPELYAEWS 316
L +FR +L YA W+
Sbjct: 292 QTNKELGNFFR---SLWGPYAGWA 312
Score = 74.7 bits (182), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 49/79 (62%), Gaps = 2/79 (2%)
Query: 327 GDFVADCICLMSLSHLQAVPVDTHVYQIACNHYHFQKSTS--KTLTPAVYNQIRAFFADK 384
G VADCICLM+L QAVPVD H++ IA Y + +TS K P ++ FF
Sbjct: 245 GTKVADCICLMALDKPQAVPVDVHMWHIAQRDYSWHPTTSQAKGPCPQTNKELGNFFRSL 304
Query: 385 FGKYAGWAHSILFCADLKK 403
+G YAGWA ++LF ADL++
Sbjct: 305 WGPYAGWAFAVLFSADLRQ 323
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 263 GVFKEHVWTLWADPSYLHYQVY----SQHKLNTNSVETMLKEYFRLDENLPELYAEWSNR 318
GV + VWTL LH VY SQ T +++YF+LD L +LY W +
Sbjct: 55 GVLADQVWTLTQTEEQLHCTVYRGDKSQASRPTPDELEAVRKYFQLDVTLAQLYHHWGSV 114
Query: 319 DAFFRQTCGDF 329
D+ F++ F
Sbjct: 115 DSHFQEVAQKF 125
>pdb|2NOH|A Chain A, Structure Of Catalytically Inactive Q315a Human 8-
Oxoguanine Glycosylase Complexed To 8-oxoguanine Dna
Length = 325
Score = 168 bits (425), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 107/324 (33%), Positives = 157/324 (48%), Gaps = 48/324 (14%)
Query: 10 LSGKILCPAIEXXXXXXXXXXXXFRWKQLTSDEKKLGNRFQGVFKECVWTLWADPSYLHY 69
L I CP E FRW++ + + GV + VWTL LH
Sbjct: 20 LWASIPCPRSELRLDLVLPSGQSFRWREQSP------AHWSGVLADQVWTLTQTEEQLHC 73
Query: 70 QVFSQHKLNANSVET----MLKEYFRLDENLPELYAEWSNRDAFFRQTCGDFVGIRMLNQ 125
V+ K A+ +++YF+LD L +LY W + D+ F++ F G+R+L Q
Sbjct: 74 TVYRGDKSQASRPTPDELEAVRKYFQLDVTLAQLYHHWGSVDSHFQEVAQKFQGVRLLRQ 133
Query: 126 DLTENIFSFLCSSNNNIARISGMIDKMCKEYGTLICTLDSDGNLVGDCEKGRSHAKSCPA 185
D E +FSF+CSSNNNIARI+GM++++C+ +G + LD
Sbjct: 134 DPIECLFSFICSSNNNIARITGMVERLCQAFGPRLIQLDD-------------------- 173
Query: 186 VTKFFAFPSIDALARPAVEAKLRQLGFGYRAKFIQKSAEYII-QGGGESWLERLGGKSYE 244
+ FPS+ ALA P VEA LR+LG GYRA+++ SA I+ + GG +WL++L SYE
Sbjct: 174 -VTYHGFPSLQALAGPEVEAHLRKLGLGYRARYVSASARAILEEQGGLAWLQQLRESSYE 232
Query: 245 EAREELQRLPGIGAKVGDGV------------FKEHVWTLWADPSYLHYQVYSQHKLNTN 292
EA + L LPG+G +V D + H+W + A Y + SQ K +
Sbjct: 233 EAHKALCILPGVGTQVADCICLMALDKPQAVPVDVHMWHI-AQRDYSWHPTTSQAKGPSP 291
Query: 293 SVETMLKEYFRLDENLPELYAEWS 316
L +FR +L YA W+
Sbjct: 292 QTNKELGNFFR---SLWGPYAGWA 312
Score = 75.9 bits (185), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 50/79 (63%), Gaps = 2/79 (2%)
Query: 327 GDFVADCICLMSLSHLQAVPVDTHVYQIACNHYHFQKSTS--KTLTPAVYNQIRAFFADK 384
G VADCICLM+L QAVPVD H++ IA Y + +TS K +P ++ FF
Sbjct: 245 GTQVADCICLMALDKPQAVPVDVHMWHIAQRDYSWHPTTSQAKGPSPQTNKELGNFFRSL 304
Query: 385 FGKYAGWAHSILFCADLKK 403
+G YAGWA ++LF ADL++
Sbjct: 305 WGPYAGWAAAVLFSADLRQ 323
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 263 GVFKEHVWTLWADPSYLHYQVY----SQHKLNTNSVETMLKEYFRLDENLPELYAEWSNR 318
GV + VWTL LH VY SQ T +++YF+LD L +LY W +
Sbjct: 55 GVLADQVWTLTQTEEQLHCTVYRGDKSQASRPTPDELEAVRKYFQLDVTLAQLYHHWGSV 114
Query: 319 DAFFRQTCGDF 329
D+ F++ F
Sbjct: 115 DSHFQEVAQKF 125
>pdb|2XHI|A Chain A, Separation-Of-Function Mutants Unravel The Dual Reaction
Mode Of Human 8-Oxoguanine Dna Glycosylase
Length = 360
Score = 167 bits (423), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 108/329 (32%), Positives = 157/329 (47%), Gaps = 48/329 (14%)
Query: 10 LSGKILCPAIEXXXXXXXXXXXXFRWKQLTSDEKKLGNRFQGVFKECVWTLWADPSYLHY 69
L I CP E FRW++ + + GV + VWTL LH
Sbjct: 37 LWASIPCPRSELRLDLVLPSGQSFRWREQSPAH------WSGVLADQVWTLTQTEEQLHC 90
Query: 70 QVFSQHKLNANSVET----MLKEYFRLDENLPELYAEWSNRDAFFRQTCGDFVGIRMLNQ 125
V+ K A+ +++YF+LD L +LY W + D+ F++ F G+R+L Q
Sbjct: 91 TVYRGDKSQASRPTPDELEAVRKYFQLDVTLAQLYHHWGSVDSHFQEVAQKFQGVRLLRQ 150
Query: 126 DLTENIFSFLCSSNNNIARISGMIDKMCKEYGTLICTLDSDGNLVGDCEKGRSHAKSCPA 185
D E +FSF+CSSNNNIARI+GM++++C+ +G + LD
Sbjct: 151 DPIECLFSFICSSNNNIARITGMVERLCQAFGPRLIQLDD-------------------- 190
Query: 186 VTKFFAFPSIDALARPAVEAKLRQLGFGYRAKFIQKSAEYII-QGGGESWLERLGGKSYE 244
+ FPS+ ALA P VEA LR+LG GYRA+++ SA I+ + GG +WL++L SYE
Sbjct: 191 -VTYHGFPSLQALAGPEVEAHLRKLGLGYRARYVSASARAILEEQGGLAWLQQLRESSYE 249
Query: 245 EAREELQRLPGIGAKVGDGV------------FKEHVWTLWADPSYLHYQVYSQHKLNTN 292
EA + L LPG+G V D + H+W + A Y + SQ K +
Sbjct: 250 EAHKALCILPGVGTCVADKICLMALDKPQAVPVNVHMWHI-AQRDYSWHPTTSQAKGPSP 308
Query: 293 SVETMLKEYFRLDENLPELYAEWSNRDAF 321
L +FR +L YA W+ F
Sbjct: 309 QTNKELGNFFR---SLWGPYAGWAQAVLF 334
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 40/96 (41%), Positives = 57/96 (59%), Gaps = 4/96 (4%)
Query: 327 GDFVADCICLMSLSHLQAVPVDTHVYQIACNHYHFQKSTS--KTLTPAVYNQIRAFFADK 384
G VAD ICLM+L QAVPV+ H++ IA Y + +TS K +P ++ FF
Sbjct: 262 GTCVADKICLMALDKPQAVPVNVHMWHIAQRDYSWHPTTSQAKGPSPQTNKELGNFFRSL 321
Query: 385 FGKYAGWAHSILFCADLKKFQAKPGEEKVGKRESGT 420
+G YAGWA ++LF ADL+ Q++ +E KR G+
Sbjct: 322 WGPYAGWAQAVLFSADLR--QSRHAQEPPAKRRKGS 355
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 263 GVFKEHVWTLWADPSYLHYQVY----SQHKLNTNSVETMLKEYFRLDENLPELYAEWSNR 318
GV + VWTL LH VY SQ T +++YF+LD L +LY W +
Sbjct: 72 GVLADQVWTLTQTEEQLHCTVYRGDKSQASRPTPDELEAVRKYFQLDVTLAQLYHHWGSV 131
Query: 319 DAFFRQTCGDF 329
D+ F++ F
Sbjct: 132 DSHFQEVAQKF 142
>pdb|2NOL|A Chain A, Structure Of Catalytically Inactive Human 8-Oxoguanine
Glycosylase Distal Crosslink To Oxog Dna
Length = 325
Score = 167 bits (423), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 108/329 (32%), Positives = 157/329 (47%), Gaps = 48/329 (14%)
Query: 10 LSGKILCPAIEXXXXXXXXXXXXFRWKQLTSDEKKLGNRFQGVFKECVWTLWADPSYLHY 69
L I CP E FRW++ + + GV + VWTL LH
Sbjct: 20 LWASIPCPRSELRLDLVLPSGQSFRWREQSP------AHWSGVLADQVWTLTQTEEQLHC 73
Query: 70 QVFSQHKLNANSVET----MLKEYFRLDENLPELYAEWSNRDAFFRQTCGDFVGIRMLNQ 125
V+ K A+ +++YF+LD L +LY W + D+ F++ F G+R+L Q
Sbjct: 74 TVYRGDKSQASRPTPDELEAVRKYFQLDVTLAQLYHHWGSVDSHFQEVAQKFQGVRLLRQ 133
Query: 126 DLTENIFSFLCSSNNNIARISGMIDKMCKEYGTLICTLDSDGNLVGDCEKGRSHAKSCPA 185
D E +FSF+CSSNNNIARI+GM++++C+ +G + LD
Sbjct: 134 DPIECLFSFICSSNNNIARITGMVERLCQAFGPRLIQLDD-------------------- 173
Query: 186 VTKFFAFPSIDALARPAVEAKLRQLGFGYRAKFIQKSAEYII-QGGGESWLERLGGKSYE 244
+ FPS+ ALA P VEA LR+LG GYRA+++ SA I+ + GG +WL++L SYE
Sbjct: 174 -VTYHGFPSLQALAGPEVEAHLRKLGLGYRARYVSASARAILEEQGGLAWLQQLRESSYE 232
Query: 245 EAREELQRLPGIGAKVGDGV------------FKEHVWTLWADPSYLHYQVYSQHKLNTN 292
EA + L LPG+G +V D + H+W + A Y + SQ K
Sbjct: 233 EAHKALCILPGVGTQVADCICLMALDKPQAVPVDVHMWHI-AQRDYSWHPTTSQAKGPCP 291
Query: 293 SVETMLKEYFRLDENLPELYAEWSNRDAF 321
L +FR +L YA W+ F
Sbjct: 292 QTNKELGNFFR---SLWGPYAGWAQAVLF 317
Score = 75.9 bits (185), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 49/79 (62%), Gaps = 2/79 (2%)
Query: 327 GDFVADCICLMSLSHLQAVPVDTHVYQIACNHYHFQKSTS--KTLTPAVYNQIRAFFADK 384
G VADCICLM+L QAVPVD H++ IA Y + +TS K P ++ FF
Sbjct: 245 GTQVADCICLMALDKPQAVPVDVHMWHIAQRDYSWHPTTSQAKGPCPQTNKELGNFFRSL 304
Query: 385 FGKYAGWAHSILFCADLKK 403
+G YAGWA ++LF ADL++
Sbjct: 305 WGPYAGWAQAVLFSADLRQ 323
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 263 GVFKEHVWTLWADPSYLHYQVY----SQHKLNTNSVETMLKEYFRLDENLPELYAEWSNR 318
GV + VWTL LH VY SQ T +++YF+LD L +LY W +
Sbjct: 55 GVLADQVWTLTQTEEQLHCTVYRGDKSQASRPTPDELEAVRKYFQLDVTLAQLYHHWGSV 114
Query: 319 DAFFRQTCGDF 329
D+ F++ F
Sbjct: 115 DSHFQEVAQKF 125
>pdb|3IH7|A Chain A, Crystal Structure Of Catalytically Active Human
8-Oxoguanine Glycosylase Distally Crosslinked To
Guanine-Containing Dna
Length = 316
Score = 167 bits (422), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 109/329 (33%), Positives = 156/329 (47%), Gaps = 48/329 (14%)
Query: 10 LSGKILCPAIEXXXXXXXXXXXXFRWKQLTSDEKKLGNRFQGVFKECVWTLWADPSYLHY 69
L I CP E FRW++ + + GV + VWTL LH
Sbjct: 13 LWASIPCPRSELRLDLVLPSGQSFRWREQSP------AHWSGVLADQVWTLTQTEEQLHC 66
Query: 70 QVF----SQHKLNANSVETMLKEYFRLDENLPELYAEWSNRDAFFRQTCGDFVGIRMLNQ 125
V+ SQ +++YF+LD L +LY W + D+ F++ F G+R+L Q
Sbjct: 67 TVYRGDLSQASRPTPDELEAVRKYFQLDVTLAQLYHHWGSVDSHFQEVAQKFQGVRLLRQ 126
Query: 126 DLTENIFSFLCSSNNNIARISGMIDKMCKEYGTLICTLDSDGNLVGDCEKGRSHAKSCPA 185
D E +FSF+CSSNNNIARI+GM++++C+ +G + LD
Sbjct: 127 DPIECLFSFICSSNNNIARITGMVERLCQAFGPRLIQLDD-------------------- 166
Query: 186 VTKFFAFPSIDALARPAVEAKLRQLGFGYRAKFIQKSAEYII-QGGGESWLERLGGKSYE 244
+ FPS+ ALA P VEA LR+LG GYRA+++ SA I+ + GG +WL++L SYE
Sbjct: 167 -VTYHGFPSLQALAGPEVEAHLRKLGLGYRARYVSASARAILEEQGGLAWLQQLRESSYE 225
Query: 245 EAREELQRLPGIGAKVGDGV------------FKEHVWTLWADPSYLHYQVYSQHKLNTN 292
EA + L LPG+G KV D + H+W + A Y + SQ K
Sbjct: 226 EAHKALCILPGVGTKVADCICLMALDKPQAVPVDVHMWHI-AQRDYSWHPTTSQAKGPCP 284
Query: 293 SVETMLKEYFRLDENLPELYAEWSNRDAF 321
L +FR +L YA W+ F
Sbjct: 285 QTNKELGNFFR---SLWGPYAGWAQAVLF 310
Score = 75.5 bits (184), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 49/79 (62%), Gaps = 2/79 (2%)
Query: 327 GDFVADCICLMSLSHLQAVPVDTHVYQIACNHYHFQKSTS--KTLTPAVYNQIRAFFADK 384
G VADCICLM+L QAVPVD H++ IA Y + +TS K P ++ FF
Sbjct: 238 GTKVADCICLMALDKPQAVPVDVHMWHIAQRDYSWHPTTSQAKGPCPQTNKELGNFFRSL 297
Query: 385 FGKYAGWAHSILFCADLKK 403
+G YAGWA ++LF ADL++
Sbjct: 298 WGPYAGWAQAVLFSADLRQ 316
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 263 GVFKEHVWTLWADPSYLHYQVY----SQHKLNTNSVETMLKEYFRLDENLPELYAEWSNR 318
GV + VWTL LH VY SQ T +++YF+LD L +LY W +
Sbjct: 48 GVLADQVWTLTQTEEQLHCTVYRGDLSQASRPTPDELEAVRKYFQLDVTLAQLYHHWGSV 107
Query: 319 DAFFRQTCGDF 329
D+ F++ F
Sbjct: 108 DSHFQEVAQKF 118
>pdb|2I5W|A Chain A, Structure Of Hogg1 Crosslinked To Dna Sampling A Normal G
Adjacent To An Oxog
Length = 315
Score = 166 bits (420), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 108/329 (32%), Positives = 157/329 (47%), Gaps = 48/329 (14%)
Query: 10 LSGKILCPAIEXXXXXXXXXXXXFRWKQLTSDEKKLGNRFQGVFKECVWTLWADPSYLHY 69
L I CP E FRW++ + + GV + VWTL LH
Sbjct: 14 LWASIPCPRSELRLDLVLPSGQSFRWREQSP------AHWSGVLADQVWTLTQTEEQLHC 67
Query: 70 QVFSQHKLNANSVET----MLKEYFRLDENLPELYAEWSNRDAFFRQTCGDFVGIRMLNQ 125
V+ K A+ +++YF+LD L +LY W + D+ F++ F G+R+L Q
Sbjct: 68 TVYRGDKSQASRPTPDELEAVRKYFQLDVTLAQLYHHWGSVDSHFQEVAQKFQGVRLLRQ 127
Query: 126 DLTENIFSFLCSSNNNIARISGMIDKMCKEYGTLICTLDSDGNLVGDCEKGRSHAKSCPA 185
D E +FSF+CSS NNIARI+GM++++C+ +G + LD
Sbjct: 128 DPIECLFSFICSSCNNIARITGMVERLCQAFGPRLIQLDD-------------------- 167
Query: 186 VTKFFAFPSIDALARPAVEAKLRQLGFGYRAKFIQKSAEYII-QGGGESWLERLGGKSYE 244
+ FPS+ ALA P VEA LR+LG GYRA+++ SA I+ + GG +WL++L SYE
Sbjct: 168 -VTYHGFPSLQALAGPEVEAHLRKLGLGYRARYVSASARAILEEQGGLAWLQQLRESSYE 226
Query: 245 EAREELQRLPGIGAKVGDGV------------FKEHVWTLWADPSYLHYQVYSQHKLNTN 292
EA + L LPG+G KV D + H+W + A Y + SQ K +
Sbjct: 227 EAHKALCILPGVGTKVADCICLMALDKPQAVPVDVHMWHI-AQRDYSWHPTTSQAKGPSP 285
Query: 293 SVETMLKEYFRLDENLPELYAEWSNRDAF 321
L +FR +L YA W+ F
Sbjct: 286 QTNKELGNFFR---SLWGPYAGWAQAVLF 311
Score = 75.1 bits (183), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 48/77 (62%), Gaps = 2/77 (2%)
Query: 327 GDFVADCICLMSLSHLQAVPVDTHVYQIACNHYHFQKSTS--KTLTPAVYNQIRAFFADK 384
G VADCICLM+L QAVPVD H++ IA Y + +TS K +P ++ FF
Sbjct: 239 GTKVADCICLMALDKPQAVPVDVHMWHIAQRDYSWHPTTSQAKGPSPQTNKELGNFFRSL 298
Query: 385 FGKYAGWAHSILFCADL 401
+G YAGWA ++LF ADL
Sbjct: 299 WGPYAGWAQAVLFSADL 315
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 263 GVFKEHVWTLWADPSYLHYQVY----SQHKLNTNSVETMLKEYFRLDENLPELYAEWSNR 318
GV + VWTL LH VY SQ T +++YF+LD L +LY W +
Sbjct: 49 GVLADQVWTLTQTEEQLHCTVYRGDKSQASRPTPDELEAVRKYFQLDVTLAQLYHHWGSV 108
Query: 319 DAFFRQTCGDF 329
D+ F++ F
Sbjct: 109 DSHFQEVAQKF 119
>pdb|1YQK|A Chain A, Human 8-Oxoguanine Glycosylase Crosslinked With Guanine
Containing Dna
Length = 319
Score = 166 bits (420), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 108/329 (32%), Positives = 157/329 (47%), Gaps = 48/329 (14%)
Query: 10 LSGKILCPAIEXXXXXXXXXXXXFRWKQLTSDEKKLGNRFQGVFKECVWTLWADPSYLHY 69
L I CP E FRW++ + + GV + VWTL LH
Sbjct: 14 LWASIPCPRSELRLDLVLPSGQSFRWREQSP------AHWSGVLADQVWTLTQTEEQLHC 67
Query: 70 QVFSQHKLNANSVET----MLKEYFRLDENLPELYAEWSNRDAFFRQTCGDFVGIRMLNQ 125
V+ K A+ +++YF+LD L +LY W + D+ F++ F G+R+L Q
Sbjct: 68 TVYRGDKSQASRPTPDELEAVRKYFQLDVTLAQLYHHWGSVDSHFQEVAQKFQGVRLLRQ 127
Query: 126 DLTENIFSFLCSSNNNIARISGMIDKMCKEYGTLICTLDSDGNLVGDCEKGRSHAKSCPA 185
D E +FSF+CSS NNIARI+GM++++C+ +G + LD
Sbjct: 128 DPIECLFSFICSSCNNIARITGMVERLCQAFGPRLIQLDD-------------------- 167
Query: 186 VTKFFAFPSIDALARPAVEAKLRQLGFGYRAKFIQKSAEYII-QGGGESWLERLGGKSYE 244
+ FPS+ ALA P VEA LR+LG GYRA+++ SA I+ + GG +WL++L SYE
Sbjct: 168 -VTYHGFPSLQALAGPEVEAHLRKLGLGYRARYVSASARAILEEQGGLAWLQQLRESSYE 226
Query: 245 EAREELQRLPGIGAKVGDGV------------FKEHVWTLWADPSYLHYQVYSQHKLNTN 292
EA + L LPG+G KV D + H+W + A Y + SQ K +
Sbjct: 227 EAHKALCILPGVGTKVADCICLMALDKPQAVPVDVHMWHI-AQRDYSWHPTTSQAKGPSP 285
Query: 293 SVETMLKEYFRLDENLPELYAEWSNRDAF 321
L +FR +L YA W+ F
Sbjct: 286 QTNKELGNFFR---SLWGPYAGWAQAVLF 311
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 50/79 (63%), Gaps = 2/79 (2%)
Query: 327 GDFVADCICLMSLSHLQAVPVDTHVYQIACNHYHFQKSTS--KTLTPAVYNQIRAFFADK 384
G VADCICLM+L QAVPVD H++ IA Y + +TS K +P ++ FF
Sbjct: 239 GTKVADCICLMALDKPQAVPVDVHMWHIAQRDYSWHPTTSQAKGPSPQTNKELGNFFRSL 298
Query: 385 FGKYAGWAHSILFCADLKK 403
+G YAGWA ++LF ADL++
Sbjct: 299 WGPYAGWAQAVLFSADLRQ 317
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 263 GVFKEHVWTLWADPSYLHYQVY----SQHKLNTNSVETMLKEYFRLDENLPELYAEWSNR 318
GV + VWTL LH VY SQ T +++YF+LD L +LY W +
Sbjct: 49 GVLADQVWTLTQTEEQLHCTVYRGDKSQASRPTPDELEAVRKYFQLDVTLAQLYHHWGSV 108
Query: 319 DAFFRQTCGDF 329
D+ F++ F
Sbjct: 109 DSHFQEVAQKF 119
>pdb|3KTU|A Chain A, Structure Of Human 8-Oxoguanine Glycosylase 1 Bound To
Fluorninated Oxog-Containing Dna
Length = 317
Score = 166 bits (419), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 108/329 (32%), Positives = 157/329 (47%), Gaps = 48/329 (14%)
Query: 10 LSGKILCPAIEXXXXXXXXXXXXFRWKQLTSDEKKLGNRFQGVFKECVWTLWADPSYLHY 69
L I CP E FRW++ + + GV + VWTL LH
Sbjct: 14 LWASIPCPRSELRLDLVLPSGQSFRWREQSP------AHWSGVLADQVWTLTQTEEQLHC 67
Query: 70 QVFSQHKLNANSVET----MLKEYFRLDENLPELYAEWSNRDAFFRQTCGDFVGIRMLNQ 125
V+ K A+ +++YF+LD L +LY W + D+ F++ F G+R+L Q
Sbjct: 68 TVYRGDKSQASRPTPDELEAVRKYFQLDVTLAQLYHHWGSVDSHFQEVAQKFQGVRLLRQ 127
Query: 126 DLTENIFSFLCSSNNNIARISGMIDKMCKEYGTLICTLDSDGNLVGDCEKGRSHAKSCPA 185
D E +FSF+CSS NNIARI+GM++++C+ +G + LD
Sbjct: 128 DPIECLFSFICSSCNNIARITGMVERLCQAFGPRLIQLDD-------------------- 167
Query: 186 VTKFFAFPSIDALARPAVEAKLRQLGFGYRAKFIQKSAEYII-QGGGESWLERLGGKSYE 244
+ FPS+ ALA P VEA LR+LG GYRA+++ SA I+ + GG +WL++L SYE
Sbjct: 168 -VTYHGFPSLQALAGPEVEAHLRKLGLGYRARYVSASARAILEEQGGLAWLQQLRESSYE 226
Query: 245 EAREELQRLPGIGAKVGDGV------------FKEHVWTLWADPSYLHYQVYSQHKLNTN 292
EA + L LPG+G KV D + H+W + A Y + SQ K +
Sbjct: 227 EAHKALCILPGVGTKVADCICLMALDKPQAVPVDVHMWHI-AQRDYSWHPTTSQAKGPSP 285
Query: 293 SVETMLKEYFRLDENLPELYAEWSNRDAF 321
L +FR +L YA W+ F
Sbjct: 286 QTNKELGNFFR---SLWGPYAGWAQAVLF 311
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 50/79 (63%), Gaps = 2/79 (2%)
Query: 327 GDFVADCICLMSLSHLQAVPVDTHVYQIACNHYHFQKSTS--KTLTPAVYNQIRAFFADK 384
G VADCICLM+L QAVPVD H++ IA Y + +TS K +P ++ FF
Sbjct: 239 GTKVADCICLMALDKPQAVPVDVHMWHIAQRDYSWHPTTSQAKGPSPQTNKELGNFFRSL 298
Query: 385 FGKYAGWAHSILFCADLKK 403
+G YAGWA ++LF ADL++
Sbjct: 299 WGPYAGWAQAVLFSADLRQ 317
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 263 GVFKEHVWTLWADPSYLHYQVY----SQHKLNTNSVETMLKEYFRLDENLPELYAEWSNR 318
GV + VWTL LH VY SQ T +++YF+LD L +LY W +
Sbjct: 49 GVLADQVWTLTQTEEQLHCTVYRGDKSQASRPTPDELEAVRKYFQLDVTLAQLYHHWGSV 108
Query: 319 DAFFRQTCGDF 329
D+ F++ F
Sbjct: 109 DSHFQEVAQKF 119
>pdb|2NOF|A Chain A, Structure Of Q315f Human 8-oxoguanine Glycosylase Proximal
Crosslink To 8-oxoguanine Dna
Length = 325
Score = 166 bits (419), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 107/324 (33%), Positives = 156/324 (48%), Gaps = 48/324 (14%)
Query: 10 LSGKILCPAIEXXXXXXXXXXXXFRWKQLTSDEKKLGNRFQGVFKECVWTLWADPSYLHY 69
L I CP E FRW++ + + GV + VWTL LH
Sbjct: 20 LWASIPCPRSELRLDLVLPSGQSFRWREQSP------AHWSGVLADQVWTLTQTEEQLHC 73
Query: 70 QVFSQHKLNANSVET----MLKEYFRLDENLPELYAEWSNRDAFFRQTCGDFVGIRMLNQ 125
V+ K A+ +++YF+LD L +LY W + D+ F++ F G+R+L Q
Sbjct: 74 TVYRGDKSQASRPTPDELEAVRKYFQLDVTLAQLYHHWGSVDSHFQEVAQKFQGVRLLRQ 133
Query: 126 DLTENIFSFLCSSNNNIARISGMIDKMCKEYGTLICTLDSDGNLVGDCEKGRSHAKSCPA 185
D E +FSF+CSS NNIARI+GM++++C+ +G + LD
Sbjct: 134 DPIECLFSFICSSCNNIARITGMVERLCQAFGPRLIQLDD-------------------- 173
Query: 186 VTKFFAFPSIDALARPAVEAKLRQLGFGYRAKFIQKSAEYII-QGGGESWLERLGGKSYE 244
+ FPS+ ALA P VEA LR+LG GYRA+++ SA I+ + GG +WL++L SYE
Sbjct: 174 -VTYHGFPSLQALAGPEVEAHLRKLGLGYRARYVSASARAILEEQGGLAWLQQLRESSYE 232
Query: 245 EAREELQRLPGIGAKVGDGV------------FKEHVWTLWADPSYLHYQVYSQHKLNTN 292
EA + L LPG+G KV D + H+W + A Y + SQ K +
Sbjct: 233 EAHKALCILPGVGTKVADCICLMALDKPQAVPVDVHMWHI-AQRDYSWHPTTSQAKGPSP 291
Query: 293 SVETMLKEYFRLDENLPELYAEWS 316
L +FR +L YA W+
Sbjct: 292 QTNKELGNFFR---SLWGPYAGWA 312
Score = 75.9 bits (185), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 50/79 (63%), Gaps = 2/79 (2%)
Query: 327 GDFVADCICLMSLSHLQAVPVDTHVYQIACNHYHFQKSTS--KTLTPAVYNQIRAFFADK 384
G VADCICLM+L QAVPVD H++ IA Y + +TS K +P ++ FF
Sbjct: 245 GTKVADCICLMALDKPQAVPVDVHMWHIAQRDYSWHPTTSQAKGPSPQTNKELGNFFRSL 304
Query: 385 FGKYAGWAHSILFCADLKK 403
+G YAGWA ++LF ADL++
Sbjct: 305 WGPYAGWAFAVLFSADLRQ 323
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 263 GVFKEHVWTLWADPSYLHYQVY----SQHKLNTNSVETMLKEYFRLDENLPELYAEWSNR 318
GV + VWTL LH VY SQ T +++YF+LD L +LY W +
Sbjct: 55 GVLADQVWTLTQTEEQLHCTVYRGDKSQASRPTPDELEAVRKYFQLDVTLAQLYHHWGSV 114
Query: 319 DAFFRQTCGDF 329
D+ F++ F
Sbjct: 115 DSHFQEVAQKF 125
>pdb|2NOI|A Chain A, Structure Of G42a Human 8-Oxoguanine Glycosylase
Crosslinked To Undamaged G-Containing Dna
Length = 325
Score = 165 bits (418), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 107/329 (32%), Positives = 157/329 (47%), Gaps = 48/329 (14%)
Query: 10 LSGKILCPAIEXXXXXXXXXXXXFRWKQLTSDEKKLGNRFQGVFKECVWTLWADPSYLHY 69
L I CP E FRW++ + + GV + VWTL LH
Sbjct: 20 LWASIPCPRSELRLDLVLPSAQSFRWREQSP------AHWSGVLADQVWTLTQTEEQLHC 73
Query: 70 QVFSQHKLNANSVET----MLKEYFRLDENLPELYAEWSNRDAFFRQTCGDFVGIRMLNQ 125
V+ K A+ +++YF+LD L +LY W + D+ F++ F G+R+L Q
Sbjct: 74 TVYRGDKSQASRPTPDELEAVRKYFQLDVTLAQLYHHWGSVDSHFQEVAQKFQGVRLLRQ 133
Query: 126 DLTENIFSFLCSSNNNIARISGMIDKMCKEYGTLICTLDSDGNLVGDCEKGRSHAKSCPA 185
D E +FSF+CSS NNIARI+GM++++C+ +G + LD
Sbjct: 134 DPIECLFSFICSSCNNIARITGMVERLCQAFGPRLIQLDD-------------------- 173
Query: 186 VTKFFAFPSIDALARPAVEAKLRQLGFGYRAKFIQKSAEYII-QGGGESWLERLGGKSYE 244
+ FPS+ ALA P VEA LR+LG GYRA+++ SA I+ + GG +WL++L SYE
Sbjct: 174 -VTYHGFPSLQALAGPEVEAHLRKLGLGYRARYVSASARAILEEQGGLAWLQQLRESSYE 232
Query: 245 EAREELQRLPGIGAKVGDGV------------FKEHVWTLWADPSYLHYQVYSQHKLNTN 292
EA + L LPG+G +V D + H+W + A Y + SQ K +
Sbjct: 233 EAHKALCILPGVGTQVADCICLMALDKPQAVPVDVHMWHI-AQRDYSWHPTTSQAKGPSP 291
Query: 293 SVETMLKEYFRLDENLPELYAEWSNRDAF 321
L +FR +L YA W+ F
Sbjct: 292 QTNKELGNFFR---SLWGPYAGWAQAVLF 317
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 50/79 (63%), Gaps = 2/79 (2%)
Query: 327 GDFVADCICLMSLSHLQAVPVDTHVYQIACNHYHFQKSTS--KTLTPAVYNQIRAFFADK 384
G VADCICLM+L QAVPVD H++ IA Y + +TS K +P ++ FF
Sbjct: 245 GTQVADCICLMALDKPQAVPVDVHMWHIAQRDYSWHPTTSQAKGPSPQTNKELGNFFRSL 304
Query: 385 FGKYAGWAHSILFCADLKK 403
+G YAGWA ++LF ADL++
Sbjct: 305 WGPYAGWAQAVLFSADLRQ 323
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 263 GVFKEHVWTLWADPSYLHYQVY----SQHKLNTNSVETMLKEYFRLDENLPELYAEWSNR 318
GV + VWTL LH VY SQ T +++YF+LD L +LY W +
Sbjct: 55 GVLADQVWTLTQTEEQLHCTVYRGDKSQASRPTPDELEAVRKYFQLDVTLAQLYHHWGSV 114
Query: 319 DAFFRQTCGDF 329
D+ F++ F
Sbjct: 115 DSHFQEVAQKF 125
>pdb|1YQL|A Chain A, Catalytically Inactive Hogg1 Crosslinked With 7-Deaza-8-
Azaguanine Containing Dna
pdb|1YQM|A Chain A, Catalytically Inactive Human 8-Oxoguanine Glycosylase
Crosslinked To 7-Deazaguanine Containing Dna
pdb|1YQR|A Chain A, Catalytically Inactive Human 8-Oxoguanine Glycosylase
Crosslinked To Oxog Containing Dna
Length = 319
Score = 164 bits (416), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 107/329 (32%), Positives = 157/329 (47%), Gaps = 48/329 (14%)
Query: 10 LSGKILCPAIEXXXXXXXXXXXXFRWKQLTSDEKKLGNRFQGVFKECVWTLWADPSYLHY 69
L I CP E FRW++ + + GV + VWTL LH
Sbjct: 14 LWASIPCPRSELRLDLVLPSGQSFRWREQSP------AHWSGVLADQVWTLTQTEEQLHC 67
Query: 70 QVFSQHKLNANSVET----MLKEYFRLDENLPELYAEWSNRDAFFRQTCGDFVGIRMLNQ 125
V+ K A+ +++YF+LD L +LY W + D+ F++ F G+R+L Q
Sbjct: 68 TVYRGDKSQASRPTPDELEAVRKYFQLDVTLAQLYHHWGSVDSHFQEVAQKFQGVRLLRQ 127
Query: 126 DLTENIFSFLCSSNNNIARISGMIDKMCKEYGTLICTLDSDGNLVGDCEKGRSHAKSCPA 185
D E +FSF+CSS NNIARI+GM++++C+ +G + LD
Sbjct: 128 DPIECLFSFICSSCNNIARITGMVERLCQAFGPRLIQLDD-------------------- 167
Query: 186 VTKFFAFPSIDALARPAVEAKLRQLGFGYRAKFIQKSAEYII-QGGGESWLERLGGKSYE 244
+ FPS+ ALA P VEA LR+LG GYRA+++ SA I+ + GG +WL++L SYE
Sbjct: 168 -VTYHGFPSLQALAGPEVEAHLRKLGLGYRARYVSASARAILEEQGGLAWLQQLRESSYE 226
Query: 245 EAREELQRLPGIGAKVGDGV------------FKEHVWTLWADPSYLHYQVYSQHKLNTN 292
EA + L LPG+G +V D + H+W + A Y + SQ K +
Sbjct: 227 EAHKALCILPGVGTQVADCICLMALDKPQAVPVDVHMWHI-AQRDYSWHPTTSQAKGPSP 285
Query: 293 SVETMLKEYFRLDENLPELYAEWSNRDAF 321
L +FR +L YA W+ F
Sbjct: 286 QTNKELGNFFR---SLWGPYAGWAQAVLF 311
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 50/79 (63%), Gaps = 2/79 (2%)
Query: 327 GDFVADCICLMSLSHLQAVPVDTHVYQIACNHYHFQKSTS--KTLTPAVYNQIRAFFADK 384
G VADCICLM+L QAVPVD H++ IA Y + +TS K +P ++ FF
Sbjct: 239 GTQVADCICLMALDKPQAVPVDVHMWHIAQRDYSWHPTTSQAKGPSPQTNKELGNFFRSL 298
Query: 385 FGKYAGWAHSILFCADLKK 403
+G YAGWA ++LF ADL++
Sbjct: 299 WGPYAGWAQAVLFSADLRQ 317
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 263 GVFKEHVWTLWADPSYLHYQVY----SQHKLNTNSVETMLKEYFRLDENLPELYAEWSNR 318
GV + VWTL LH VY SQ T +++YF+LD L +LY W +
Sbjct: 49 GVLADQVWTLTQTEEQLHCTVYRGDKSQASRPTPDELEAVRKYFQLDVTLAQLYHHWGSV 108
Query: 319 DAFFRQTCGDF 329
D+ F++ F
Sbjct: 109 DSHFQEVAQKF 119
>pdb|2NOB|A Chain A, Structure Of Catalytically Inactive H270a Human 8-
Oxoguanine Glycosylase Crosslinked To 8-Oxoguanine Dna
Length = 325
Score = 162 bits (411), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 92/260 (35%), Positives = 135/260 (51%), Gaps = 32/260 (12%)
Query: 10 LSGKILCPAIEXXXXXXXXXXXXFRWKQLTSDEKKLGNRFQGVFKECVWTLWADPSYLHY 69
L I CP E FRW++ + + GV + VWTL LH
Sbjct: 20 LWASIPCPRSELRLDLVLPSGQSFRWREQSP------AHWSGVLADQVWTLTQTEEQLHC 73
Query: 70 QVFSQHKLNANSVET----MLKEYFRLDENLPELYAEWSNRDAFFRQTCGDFVGIRMLNQ 125
V+ K A+ +++YF+LD L +LY W + D+ F++ F G+R+L Q
Sbjct: 74 TVYRGDKSQASRPTPDELEAVRKYFQLDVTLAQLYHHWGSVDSHFQEVAQKFQGVRLLRQ 133
Query: 126 DLTENIFSFLCSSNNNIARISGMIDKMCKEYGTLICTLDSDGNLVGDCEKGRSHAKSCPA 185
D E +FSF+CSS NNIARI+GM++++C+ +G + LD
Sbjct: 134 DPIECLFSFICSSCNNIARITGMVERLCQAFGPRLIQLDD-------------------- 173
Query: 186 VTKFFAFPSIDALARPAVEAKLRQLGFGYRAKFIQKSAEYII-QGGGESWLERLGGKSYE 244
+ FPS+ ALA P VEA LR+LG GYRA+++ SA I+ + GG +WL++L SYE
Sbjct: 174 -VTYHGFPSLQALAGPEVEAHLRKLGLGYRARYVSASARAILEEQGGLAWLQQLRESSYE 232
Query: 245 EAREELQRLPGIGAKVGDGV 264
EA + L LPG+G +V D +
Sbjct: 233 EAHKALCILPGVGTQVADCI 252
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 49/79 (62%), Gaps = 2/79 (2%)
Query: 327 GDFVADCICLMSLSHLQAVPVDTHVYQIACNHYHFQKSTS--KTLTPAVYNQIRAFFADK 384
G VADCICLM+L QAVPVD ++ IA Y + +TS K +P ++ FF
Sbjct: 245 GTQVADCICLMALDKPQAVPVDVAMWHIAQRDYSWHPTTSQAKGPSPQTNKELGNFFRSL 304
Query: 385 FGKYAGWAHSILFCADLKK 403
+G YAGWA ++LF ADL++
Sbjct: 305 WGPYAGWAQAVLFSADLRQ 323
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 263 GVFKEHVWTLWADPSYLHYQVY----SQHKLNTNSVETMLKEYFRLDENLPELYAEWSNR 318
GV + VWTL LH VY SQ T +++YF+LD L +LY W +
Sbjct: 55 GVLADQVWTLTQTEEQLHCTVYRGDKSQASRPTPDELEAVRKYFQLDVTLAQLYHHWGSV 114
Query: 319 DAFFRQTCGDF 329
D+ F++ F
Sbjct: 115 DSHFQEVAQKF 125
>pdb|3F0Z|A Chain A, Crystal Structure Of Clostridium Acetobutylicum
8-Oxoguanine GlycosylaseLYASE IN ITS APO-Form
Length = 292
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 88/190 (46%), Gaps = 26/190 (13%)
Query: 75 HKLNANSVETMLKEYFRLDENLPELYAEWSNRDAFFRQTCGDFVGIRMLNQDLTENIFSF 134
+ +N + + EYF L + E+ E S RD +++ GIR+L QD E + SF
Sbjct: 64 YNINEEEFKNVWSEYFDLYRDYGEIKKELS-RDPLLKKSVDFGEGIRILRQDPFEILLSF 122
Query: 135 LCSSNNNIARISGMIDKMCKEYGTLICTLDSDGNLVGDCEKGRSHAKSCPAVTKFFAFPS 194
+ S+NN I I I+ + ++ G L+ G + ++AFP+
Sbjct: 123 IISANNRIPXIKKCINNISEKAGK---KLEYKGKI-------------------YYAFPT 160
Query: 195 IDALARPAVEAKLRQLGFGYRAKFIQKSAEYIIQGGGESWLERLGGKSYEEAREELQRLP 254
+D L E + G+RAK+++ + + I GE LE + + E EEL++
Sbjct: 161 VDKL-HEFTEKDFEECTAGFRAKYLKDTVDRIYN--GELNLEYIKSLNDNECHEELKKFX 217
Query: 255 GIGAKVGDGV 264
G+G KV D +
Sbjct: 218 GVGPKVADCI 227
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 34/73 (46%), Gaps = 10/73 (13%)
Query: 326 CGDFVADCICLMSLSHLQAVPVDTHVYQIACNHYHFQKSTSKTLTPAV-YNQIRAFFADK 384
G VADCI L S A PVDT V + + Y + P V +IR F +K
Sbjct: 219 VGPKVADCIXLFSXQKYSAFPVDTWVKKAXXSLY---------VAPDVSLKKIRDFGREK 269
Query: 385 FGKYAGWAHSILF 397
FG +G+A LF
Sbjct: 270 FGSLSGFAQQYLF 282
>pdb|3F10|A Chain A, Crystal Structure Of Clostridium Acetobutylicum
8-Oxoguanine Dna Glycosylase In Complex With
8-Oxoguanosine
Length = 292
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 88/190 (46%), Gaps = 26/190 (13%)
Query: 75 HKLNANSVETMLKEYFRLDENLPELYAEWSNRDAFFRQTCGDFVGIRMLNQDLTENIFSF 134
+ +N + + EYF L + E+ E S RD +++ GIR+L QD E + SF
Sbjct: 64 YNINEEEFKNVWSEYFDLYRDYGEIKKELS-RDPLLKKSVDFGEGIRILRQDPFEILLSF 122
Query: 135 LCSSNNNIARISGMIDKMCKEYGTLICTLDSDGNLVGDCEKGRSHAKSCPAVTKFFAFPS 194
+ S+NN I I I+ + ++ G L+ G + ++AFP+
Sbjct: 123 IISANNRIPMIKKCINNISEKAGK---KLEYKGKI-------------------YYAFPT 160
Query: 195 IDALARPAVEAKLRQLGFGYRAKFIQKSAEYIIQGGGESWLERLGGKSYEEAREELQRLP 254
+D L E + G+RAK+++ + + I GE LE + + E EEL++
Sbjct: 161 VDKL-HEFTEKDFEECTAGFRAKYLKDTVDRIY--NGELNLEYIKSLNDNECHEELKKFM 217
Query: 255 GIGAKVGDGV 264
G+G +V D +
Sbjct: 218 GVGPQVADCI 227
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 35/73 (47%), Gaps = 10/73 (13%)
Query: 326 CGDFVADCICLMSLSHLQAVPVDTHVYQIACNHYHFQKSTSKTLTPAV-YNQIRAFFADK 384
G VADCI L S+ A PVDT V + + Y + P V +IR F +K
Sbjct: 219 VGPQVADCIMLFSMQKYSAFPVDTWVKKAMMSLY---------VAPDVSLKKIRDFGREK 269
Query: 385 FGKYAGWAHSILF 397
FG +G+A LF
Sbjct: 270 FGSLSGFAQQYLF 282
>pdb|3I0X|A Chain A, Crystal Structure Of Clostridium Acetobutylicum
8-Oxoguanine GlycosylaseLYASE IN COMPLEX WITH DSDNA
CONTAINING ADENINE Opposite To 8-Oxog
Length = 291
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 88/190 (46%), Gaps = 26/190 (13%)
Query: 75 HKLNANSVETMLKEYFRLDENLPELYAEWSNRDAFFRQTCGDFVGIRMLNQDLTENIFSF 134
+ +N + + EYF L + E+ E S RD +++ GIR+L QD E + SF
Sbjct: 64 YNINEEEFKNVWSEYFDLYRDYGEIKKELS-RDPLLKKSVDFGEGIRILRQDPFEILLSF 122
Query: 135 LCSSNNNIARISGMIDKMCKEYGTLICTLDSDGNLVGDCEKGRSHAKSCPAVTKFFAFPS 194
+ S+NN I I I+ + ++ G L+ G + ++AFP+
Sbjct: 123 IISANNRIPMIKKCINNISEKAGK---KLEYKGKI-------------------YYAFPT 160
Query: 195 IDALARPAVEAKLRQLGFGYRAKFIQKSAEYIIQGGGESWLERLGGKSYEEAREELQRLP 254
+D L E + G+RAK+++ + + I GE LE + + E EEL++
Sbjct: 161 VDKL-HEFTEKDFEECTAGFRAKYLKDTVDRIY--NGELNLEYIKSLNDNECHEELKKFM 217
Query: 255 GIGAKVGDGV 264
G+G +V D +
Sbjct: 218 GVGPQVADCI 227
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 35/73 (47%), Gaps = 10/73 (13%)
Query: 326 CGDFVADCICLMSLSHLQAVPVDTHVYQIACNHYHFQKSTSKTLTPAV-YNQIRAFFADK 384
G VADCI L S+ A PVDT V + + Y + P V +IR F +K
Sbjct: 219 VGPQVADCIMLFSMQKYSAFPVDTWVKKAMMSLY---------VAPDVSLKKIRDFGREK 269
Query: 385 FGKYAGWAHSILF 397
FG +G+A LF
Sbjct: 270 FGSLSGFAQQYLF 282
>pdb|3I0W|A Chain A, Crystal Structure Of Clostridium Acetobutylicum
8-Oxoguanine GlycosylaseLYASE IN COMPLEX WITH DSDNA
CONTAINING CYTOSINE Opposite To 8-Oxog
Length = 290
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 88/190 (46%), Gaps = 26/190 (13%)
Query: 75 HKLNANSVETMLKEYFRLDENLPELYAEWSNRDAFFRQTCGDFVGIRMLNQDLTENIFSF 134
+ +N + + EYF L + E+ E S RD +++ GIR+L QD E + SF
Sbjct: 64 YNINEEEFKNVWSEYFDLYRDYGEIKKELS-RDPLLKKSVDFGEGIRILRQDPFEILLSF 122
Query: 135 LCSSNNNIARISGMIDKMCKEYGTLICTLDSDGNLVGDCEKGRSHAKSCPAVTKFFAFPS 194
+ S+NN I I I+ + ++ G L+ G + ++AFP+
Sbjct: 123 IISANNRIPMIKKCINNISEKAGK---KLEYKGKI-------------------YYAFPT 160
Query: 195 IDALARPAVEAKLRQLGFGYRAKFIQKSAEYIIQGGGESWLERLGGKSYEEAREELQRLP 254
+D L E + G+RAK+++ + + I GE LE + + E EEL++
Sbjct: 161 VDKL-HEFTEKDFEECTAGFRAKYLKDTVDRIY--NGELNLEYIKSLNDNECHEELKKFM 217
Query: 255 GIGAKVGDGV 264
G+G +V D +
Sbjct: 218 GVGPQVADCI 227
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 35/73 (47%), Gaps = 10/73 (13%)
Query: 326 CGDFVADCICLMSLSHLQAVPVDTHVYQIACNHYHFQKSTSKTLTPAV-YNQIRAFFADK 384
G VADCI L S+ A PVDT V + + Y + P V +IR F +K
Sbjct: 219 VGPQVADCIMLFSMQKYSAFPVDTWVKKAMMSLY---------VAPDVSLKKIRDFGREK 269
Query: 385 FGKYAGWAHSILF 397
FG +G+A LF
Sbjct: 270 FGSLSGFAQQYLF 282
>pdb|1KQJ|A Chain A, Crystal Structure Of A Mutant Of Muty Catalytic Domain
Length = 225
Score = 32.3 bits (72), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 13/90 (14%)
Query: 180 AKSCPAVTKFFA-FPSIDALARPAVEAKLR---QLGFGYRAKFIQKSAEYIIQGGGESWL 235
A P +F A FP++ LA ++ L LG+ RA+ + K+A+ +
Sbjct: 46 ATVIPYFERFMARFPTVTDLANAPLDEVLHLWTGLGYYARARNLHKAAQQV--------- 96
Query: 236 ERLGGKSYEEAREELQRLPGIGAKVGDGVF 265
L G + E EE+ LPG+G +
Sbjct: 97 ATLHGGKFPETFEEVAALPGVGRSTAGAIL 126
>pdb|1KG5|A Chain A, Crystal Structure Of The K142q Mutant Of E.Coli Muty (Core
Fragment)
Length = 225
Score = 32.3 bits (72), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 13/90 (14%)
Query: 180 AKSCPAVTKFFA-FPSIDALARPAVEAKLR---QLGFGYRAKFIQKSAEYIIQGGGESWL 235
A P +F A FP++ LA ++ L LG+ RA+ + K+A+ +
Sbjct: 46 ATVIPYFERFMARFPTVTDLANAPLDEVLHLWTGLGYYARARNLHKAAQQV--------- 96
Query: 236 ERLGGKSYEEAREELQRLPGIGAKVGDGVF 265
L G + E EE+ LPG+G +
Sbjct: 97 ATLHGGKFPETFEEVAALPGVGRSTAGAIL 126
>pdb|1MUD|A Chain A, Catalytic Domain Of Muty From Escherichia Coli, D138n
Mutant Complexed To Adenine
pdb|1MUN|A Chain A, Catalytic Domain Of Muty From Escherichia Coli D138n
Mutant
Length = 225
Score = 32.0 bits (71), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 13/90 (14%)
Query: 180 AKSCPAVTKFFA-FPSIDALARPAVEAKLR---QLGFGYRAKFIQKSAEYIIQGGGESWL 235
A P +F A FP++ LA ++ L LG+ RA+ + K+A+ +
Sbjct: 46 ATVIPYFERFMARFPTVTDLANAPLDEVLHLWTGLGYYARARNLHKAAQQV--------- 96
Query: 236 ERLGGKSYEEAREELQRLPGIGAKVGDGVF 265
L G + E EE+ LPG+G +
Sbjct: 97 ATLHGGKFPETFEEVAALPGVGRSTAGAIL 126
>pdb|1MUY|A Chain A, Catalytic Domain Of Muty From Escherichia Coli
pdb|1KG2|A Chain A, Crystal Structure Of The Core Fragment Of Muty From E.Coli
At 1.2a Resolution
pdb|1KG3|A Chain A, Crystal Structure Of The Core Fragment Of Muty From E.Coli
At 1.55a Resolution
Length = 225
Score = 32.0 bits (71), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 13/90 (14%)
Query: 180 AKSCPAVTKFFA-FPSIDALARPAVEAKLR---QLGFGYRAKFIQKSAEYIIQGGGESWL 235
A P +F A FP++ LA ++ L LG+ RA+ + K+A+ +
Sbjct: 46 ATVIPYFERFMARFPTVTDLANAPLDEVLHLWTGLGYYARARNLHKAAQQV--------- 96
Query: 236 ERLGGKSYEEAREELQRLPGIGAKVGDGVF 265
L G + E EE+ LPG+G +
Sbjct: 97 ATLHGGKFPETFEEVAALPGVGRSTAGAIL 126
>pdb|1WEF|A Chain A, Catalytic Domain Of Muty From Escherichia Coli K20a Mutant
pdb|1WEI|A Chain A, Catalytic Domain Of Muty From Escherichia Coli K20a Mutant
Complexed To Adenine
Length = 225
Score = 32.0 bits (71), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 13/90 (14%)
Query: 180 AKSCPAVTKFFA-FPSIDALARPAVEAKLR---QLGFGYRAKFIQKSAEYIIQGGGESWL 235
A P +F A FP++ LA ++ L LG+ RA+ + K+A+ +
Sbjct: 46 ATVIPYFERFMARFPTVTDLANAPLDEVLHLWTGLGYYARARNLHKAAQQV--------- 96
Query: 236 ERLGGKSYEEAREELQRLPGIGAKVGDGVF 265
L G + E EE+ LPG+G +
Sbjct: 97 ATLHGGKFPETFEEVAALPGVGRSTAGAIL 126
>pdb|1KG4|A Chain A, Crystal Structure Of The K142a Mutant Of E. Coli Muty
(Core Fragment)
pdb|1WEG|A Chain A, Catalytic Domain Od Muty Form Escherichia Coli K142a
Mutant
Length = 225
Score = 32.0 bits (71), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 13/90 (14%)
Query: 180 AKSCPAVTKFFA-FPSIDALARPAVEAKLR---QLGFGYRAKFIQKSAEYIIQGGGESWL 235
A P +F A FP++ LA ++ L LG+ RA+ + K+A+ +
Sbjct: 46 ATVIPYFERFMARFPTVTDLANAPLDEVLHLWTGLGYYARARNLHKAAQQV--------- 96
Query: 236 ERLGGKSYEEAREELQRLPGIGAKVGDGVF 265
L G + E EE+ LPG+G +
Sbjct: 97 ATLHGGKFPETFEEVAALPGVGRSTAGAIL 126
>pdb|1KG6|A Chain A, Crystal Structure Of The K142r Mutant Of E.Coli Muty (Core
Fragment)
Length = 225
Score = 32.0 bits (71), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 13/90 (14%)
Query: 180 AKSCPAVTKFFA-FPSIDALARPAVEAKLR---QLGFGYRAKFIQKSAEYIIQGGGESWL 235
A P +F A FP++ LA ++ L LG+ RA+ + K+A+ +
Sbjct: 46 ATVIPYFERFMARFPTVTDLANAPLDEVLHLWTGLGYYARARNLHKAAQQV--------- 96
Query: 236 ERLGGKSYEEAREELQRLPGIGAKVGDGVF 265
L G + E EE+ LPG+G +
Sbjct: 97 ATLHGGKFPETFEEVAALPGVGRSTAGAIL 126
>pdb|1KG7|A Chain A, Crystal Structure Of The E161a Mutant Of E.coli Muty (core
Fragment)
Length = 225
Score = 32.0 bits (71), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 13/90 (14%)
Query: 180 AKSCPAVTKFFA-FPSIDALARPAVEAKLR---QLGFGYRAKFIQKSAEYIIQGGGESWL 235
A P +F A FP++ LA ++ L LG+ RA+ + K+A+ +
Sbjct: 46 ATVIPYFERFMARFPTVTDLANAPLDEVLHLWTGLGYYARARNLHKAAQQV--------- 96
Query: 236 ERLGGKSYEEAREELQRLPGIGAKVGDGVF 265
L G + E EE+ LPG+G +
Sbjct: 97 ATLHGGKFPETFEEVAALPGVGRSTAGAIL 126
>pdb|2Z22|X Chain X, Crystal Structure Of Phosphate Preplasmic Binding Protein
Psts From Yersinia Pestis
pdb|2Z22|A Chain A, Crystal Structure Of Phosphate Preplasmic Binding Protein
Psts From Yersinia Pestis
Length = 321
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 40/97 (41%), Gaps = 4/97 (4%)
Query: 163 LDSDGNLVGDCEKGRSHAKSCPAVTKF---FAFPSID-ALARPAVEAKLRQLGFGYRAKF 218
L DG +GD G + PA+ K P + A+ R A + + Y AK
Sbjct: 93 LTLDGKTLGDIYLGTVKKWNDPAIVKLNPGVKLPDQNIAVVRRADGSGTSFVFTSYLAKV 152
Query: 219 IQKSAEYIIQGGGESWLERLGGKSYEEAREELQRLPG 255
+ E + G +W LGGK + +QRLPG
Sbjct: 153 NAEWKEKVGAGSTVNWPTGLGGKGNDGIAAFVQRLPG 189
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,501,118
Number of Sequences: 62578
Number of extensions: 615384
Number of successful extensions: 1473
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1295
Number of HSP's gapped (non-prelim): 79
length of query: 457
length of database: 14,973,337
effective HSP length: 102
effective length of query: 355
effective length of database: 8,590,381
effective search space: 3049585255
effective search space used: 3049585255
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)