BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4725
(457 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O15527|OGG1_HUMAN N-glycosylase/DNA lyase OS=Homo sapiens GN=OGG1 PE=1 SV=2
Length = 345
Score = 185 bits (469), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 116/329 (35%), Positives = 165/329 (50%), Gaps = 48/329 (14%)
Query: 10 LSGKILCPAIELSLTLTLLGGQSFRWKQLTSDEKKLGNRFQGVFKECVWTLWADPSYLHY 69
L I CP EL L L L GQSFRW++ + + GV + VWTL LH
Sbjct: 22 LWASIPCPRSELRLDLVLPSGQSFRWREQSPAH------WSGVLADQVWTLTQTEEQLHC 75
Query: 70 QVFSQHKLNANSVET----MLKEYFRLDENLPELYAEWSNRDAFFRQTCGDFVGIRMLNQ 125
V+ K A+ +++YF+LD L +LY W + D+ F++ F G+R+L Q
Sbjct: 76 TVYRGDKSQASRPTPDELEAVRKYFQLDVTLAQLYHHWGSVDSHFQEVAQKFQGVRLLRQ 135
Query: 126 DLTENIFSFLCSSNNNIARISGMIDKMCKEYGTLICTLDSDGNLVGDCEKGRSHAKSCPA 185
D E +FSF+CSSNNNIARI+GM++++C+ +G + LD
Sbjct: 136 DPIECLFSFICSSNNNIARITGMVERLCQAFGPRLIQLDD-------------------- 175
Query: 186 VTKFFAFPSIDALARPAVEAKLRQLGFGYRAKFIQKSAEYII-QGGGESWLERLGGKSYE 244
+ FPS+ ALA P VEA LR+LG GYRA+++ SA I+ + GG +WL++L SYE
Sbjct: 176 -VTYHGFPSLQALAGPEVEAHLRKLGLGYRARYVSASARAILEEQGGLAWLQQLRESSYE 234
Query: 245 EAREELQRLPGIGAKVGDGV------------FKEHVWTLWADPSYLHYQVYSQHKLNTN 292
EA + L LPG+G KV D + H+W + A Y + SQ K +
Sbjct: 235 EAHKALCILPGVGTKVADCICLMALDKPQAVPVDVHMWHI-AQRDYSWHPTTSQAKGPSP 293
Query: 293 SVETMLKEYFRLDENLPELYAEWSNRDAF 321
L +FR +L YA W+ F
Sbjct: 294 QTNKELGNFFR---SLWGPYAGWAQAVLF 319
Score = 82.4 bits (202), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 42/96 (43%), Positives = 58/96 (60%), Gaps = 4/96 (4%)
Query: 327 GDFVADCICLMSLSHLQAVPVDTHVYQIACNHYHFQKSTS--KTLTPAVYNQIRAFFADK 384
G VADCICLM+L QAVPVD H++ IA Y + +TS K +P ++ FF
Sbjct: 247 GTKVADCICLMALDKPQAVPVDVHMWHIAQRDYSWHPTTSQAKGPSPQTNKELGNFFRSL 306
Query: 385 FGKYAGWAHSILFCADLKKFQAKPGEEKVGKRESGT 420
+G YAGWA ++LF ADL+ Q++ +E KR G+
Sbjct: 307 WGPYAGWAQAVLFSADLR--QSRHAQEPPAKRRKGS 340
Score = 42.0 bits (97), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 263 GVFKEHVWTLWADPSYLHYQVY----SQHKLNTNSVETMLKEYFRLDENLPELYAEWSNR 318
GV + VWTL LH VY SQ T +++YF+LD L +LY W +
Sbjct: 57 GVLADQVWTLTQTEEQLHCTVYRGDKSQASRPTPDELEAVRKYFQLDVTLAQLYHHWGSV 116
Query: 319 DAFFRQTCGDF 329
D+ F++ F
Sbjct: 117 DSHFQEVAQKF 127
>sp|O08760|OGG1_MOUSE N-glycosylase/DNA lyase OS=Mus musculus GN=Ogg1 PE=2 SV=2
Length = 345
Score = 184 bits (468), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 116/329 (35%), Positives = 172/329 (52%), Gaps = 48/329 (14%)
Query: 10 LSGKILCPAIELSLTLTLLGGQSFRWKQLTSDEKKLGNRFQGVFKECVWTLWADPSYLHY 69
L I CP EL L L L GQSFRWK+ + + GV + VWTL L+
Sbjct: 22 LWASIPCPRSELRLDLVLASGQSFRWKEQSPAH------WSGVLADQVWTLTQTEDQLYC 75
Query: 70 QVF--SQHKLNANSVETM--LKEYFRLDENLPELYAEWSNRDAFFRQTCGDFVGIRMLNQ 125
V+ +++ ++E + L +YF+LD +L +LY+ W++ D+ F++ F G+R+L Q
Sbjct: 76 TVYRGDDSQVSRPTLEELETLHKYFQLDVSLAQLYSHWASVDSHFQRVAQKFQGVRLLRQ 135
Query: 126 DLTENIFSFLCSSNNNIARISGMIDKMCKEYGTLICTLDSDGNLVGDCEKGRSHAKSCPA 185
D TE +FSF+CSSNNNIARI+GM++++C+ +G + LD
Sbjct: 136 DPTECLFSFICSSNNNIARITGMVERLCQAFGPRLIQLDD-------------------- 175
Query: 186 VTKFFAFPSIDALARPAVEAKLRQLGFGYRAKFIQKSAEYII-QGGGESWLERLGGKSYE 244
+ FP++ ALA P E LR+LG GYRA++++ SA+ I+ + GG +WL++L YE
Sbjct: 176 -VTYHGFPNLHALAGPEAETHLRKLGLGYRARYVRASAKAILEEQGGPAWLQQLRVAPYE 234
Query: 245 EAREELQRLPGIGAKVGDGV------------FKEHVWTLWADPSYLHYQVYSQHKLNTN 292
EA + L LPG+GAKV D + HVW + A Y + SQ K +
Sbjct: 235 EAHKALCTLPGVGAKVADCICLMALDKPQAVPVDVHVWQI-AHRDYGWHPKTSQAKGPSP 293
Query: 293 SVETMLKEYFRLDENLPELYAEWSNRDAF 321
L +FR NL YA W+ F
Sbjct: 294 LANKELGNFFR---NLWGPYAGWAQAVLF 319
Score = 83.2 bits (204), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 44/96 (45%), Positives = 58/96 (60%), Gaps = 4/96 (4%)
Query: 327 GDFVADCICLMSLSHLQAVPVDTHVYQIACNHY--HFQKSTSKTLTPAVYNQIRAFFADK 384
G VADCICLM+L QAVPVD HV+QIA Y H + S +K +P ++ FF +
Sbjct: 247 GAKVADCICLMALDKPQAVPVDVHVWQIAHRDYGWHPKTSQAKGPSPLANKELGNFFRNL 306
Query: 385 FGKYAGWAHSILFCADLKKFQAKPGEEKVGKRESGT 420
+G YAGWA ++LF ADL+ Q E KR+ G+
Sbjct: 307 WGPYAGWAQAVLFSADLR--QPSLSREPPAKRKKGS 340
Score = 39.7 bits (91), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 4/71 (5%)
Query: 263 GVFKEHVWTLWADPSYLHYQVY--SQHKLNTNSVETM--LKEYFRLDENLPELYAEWSNR 318
GV + VWTL L+ VY +++ ++E + L +YF+LD +L +LY+ W++
Sbjct: 57 GVLADQVWTLTQTEDQLYCTVYRGDDSQVSRPTLEELETLHKYFQLDVSLAQLYSHWASV 116
Query: 319 DAFFRQTCGDF 329
D+ F++ F
Sbjct: 117 DSHFQRVAQKF 127
>sp|O70249|OGG1_RAT N-glycosylase/DNA lyase OS=Rattus norvegicus GN=Ogg1 PE=2 SV=1
Length = 345
Score = 181 bits (460), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 117/329 (35%), Positives = 169/329 (51%), Gaps = 48/329 (14%)
Query: 10 LSGKILCPAIELSLTLTLLGGQSFRWKQLTSDEKKLGNRFQGVFKECVWTLWADPSYLHY 69
L I CP EL L L L GQSFRW++ + + GV + VWTL L+
Sbjct: 22 LWASIPCPRSELRLDLVLASGQSFRWREQSPAH------WSGVLADQVWTLTQTEDQLYC 75
Query: 70 QVFSQHK--LNANSVETM--LKEYFRLDENLPELYAEWSNRDAFFRQTCGDFVGIRMLNQ 125
V+ K + ++E + L +YF+LD +L +LY+ W++ D+ F+ F G+R+L Q
Sbjct: 76 TVYRGDKGQVGRPTLEELETLHKYFQLDVSLTQLYSHWASVDSHFQSVAQKFQGVRLLRQ 135
Query: 126 DLTENIFSFLCSSNNNIARISGMIDKMCKEYGTLICTLDSDGNLVGDCEKGRSHAKSCPA 185
D TE +FSF+CSSNNNIARI+GM++++C+ +G + LD
Sbjct: 136 DPTECLFSFICSSNNNIARITGMVERLCQAFGPRLVQLDD-------------------- 175
Query: 186 VTKFFAFPSIDALARPAVEAKLRQLGFGYRAKFIQKSAEYII-QGGGESWLERLGGKSYE 244
+ FP++ ALA P VE LR+LG GYRA+++ SA+ I+ + GG +WL++L SYE
Sbjct: 176 -VTYHGFPNLHALAGPEVETHLRKLGLGYRARYVCASAKAILEEQGGPAWLQQLRVASYE 234
Query: 245 EAREELQRLPGIGAKVGDGV------------FKEHVWTLWADPSYLHYQVYSQHKLNTN 292
EA + L LPG+G KV D + HVW + A Y SQ K +
Sbjct: 235 EAHKALCTLPGVGTKVADCICLMALDKPQAVPVDIHVWQI-AHRDYGWQPKTSQTKGPSP 293
Query: 293 SVETMLKEYFRLDENLPELYAEWSNRDAF 321
L +FR NL YA W+ F
Sbjct: 294 LANKELGNFFR---NLWGPYAGWAQAVLF 319
Score = 84.7 bits (208), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/96 (46%), Positives = 59/96 (61%), Gaps = 4/96 (4%)
Query: 327 GDFVADCICLMSLSHLQAVPVDTHVYQIACNHYHFQKSTSKT--LTPAVYNQIRAFFADK 384
G VADCICLM+L QAVPVD HV+QIA Y +Q TS+T +P ++ FF +
Sbjct: 247 GTKVADCICLMALDKPQAVPVDIHVWQIAHRDYGWQPKTSQTKGPSPLANKELGNFFRNL 306
Query: 385 FGKYAGWAHSILFCADLKKFQAKPGEEKVGKRESGT 420
+G YAGWA ++LF ADL+ Q E KR+ G+
Sbjct: 307 WGPYAGWAQAVLFSADLR--QQNLSREPPAKRKKGS 340
Score = 39.7 bits (91), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 4/71 (5%)
Query: 263 GVFKEHVWTLWADPSYLHYQVYSQHK--LNTNSVETM--LKEYFRLDENLPELYAEWSNR 318
GV + VWTL L+ VY K + ++E + L +YF+LD +L +LY+ W++
Sbjct: 57 GVLADQVWTLTQTEDQLYCTVYRGDKGQVGRPTLEELETLHKYFQLDVSLTQLYSHWASV 116
Query: 319 DAFFRQTCGDF 329
D+ F+ F
Sbjct: 117 DSHFQSVAQKF 127
>sp|Q9V3I8|OGG1_DROME N-glycosylase/DNA lyase OS=Drosophila melanogaster GN=Ogg1 PE=2
SV=2
Length = 343
Score = 147 bits (370), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 103/311 (33%), Positives = 156/311 (50%), Gaps = 34/311 (10%)
Query: 20 ELSLTLTLLGGQSFRWKQLTSDEKKLGNR--FQGVFKECVWTLWADPSYLHYQVF-SQHK 76
E L TLLGGQSFRW+ + GNR + GV W L + S++ Y+ + +
Sbjct: 33 ECDLERTLLGGQSFRWRSICD-----GNRTKYGGVVFNTYWVLQQEESFITYEAYGTSSP 87
Query: 77 LNANSVETMLKEYFRLDENLPELYAEWSNRDAFFRQTCGDFVGIRMLNQDLTENIFSFLC 136
L +++ +Y R+D +L +W ++D F + +R+L+Q+ ENIFSFLC
Sbjct: 88 LATKDYSSLISDYLRVDFDLKVNQKDWLSKDDNFVKFLSK--PVRLLSQEPFENIFSFLC 145
Query: 137 SSNNNIARISGMIDKMCKEYGTLICTLDSDGNLVGDCEKGRSHAKSCPAVTKFFAFPSID 196
S NNNI RIS MI+ C +GT I G+ G + A + P + +F P D
Sbjct: 146 SQNNNIKRISSMIEWFCATFGTKI------GHFNG------ADAYTFPTINRFHDIPCED 193
Query: 197 ALARPAVEAKLRQLGFGYRAKFIQKSAEYIIQGGGESWLERLGGKSYEEAREELQRLPGI 256
+ A+LR FGYRAKFI ++ + I + GG++W L +E+AREEL LPGI
Sbjct: 194 ------LNAQLRAAKFGYRAKFIAQTLQEIQKKGGQNWFISLKSMPFEKAREELTLLPGI 247
Query: 257 GAKVGDGVFKEHVWTLWADPSYLH-YQVYSQHKL-----NTNSVETMLKEYFRLDENLPE 310
G KV D + + L + P +H Y++ + L N + + +E + + L
Sbjct: 248 GYKVADCICLMSMGHLESVPVDIHIYRIAQNYYLPHLTGQKNVTKKIYEEVSKHFQKLHG 307
Query: 311 LYAEWSNRDAF 321
YA W+ F
Sbjct: 308 KYAGWAQAILF 318
Score = 90.9 bits (224), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 40/76 (52%), Positives = 53/76 (69%)
Query: 330 VADCICLMSLSHLQAVPVDTHVYQIACNHYHFQKSTSKTLTPAVYNQIRAFFADKFGKYA 389
VADCICLMS+ HL++VPVD H+Y+IA N+Y + K +T +Y ++ F GKYA
Sbjct: 251 VADCICLMSMGHLESVPVDIHIYRIAQNYYLPHLTGQKNVTKKIYEEVSKHFQKLHGKYA 310
Query: 390 GWAHSILFCADLKKFQ 405
GWA +ILF ADL +FQ
Sbjct: 311 GWAQAILFSADLSQFQ 326
Score = 32.0 bits (71), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 8/91 (8%)
Query: 235 LER--LGGKSYEEAREELQRLPGIGAKVGDGVFKEHVWTLWADPSYLHYQVY-SQHKLNT 291
LER LGG+S+ G K G VF + W L + S++ Y+ Y + L T
Sbjct: 36 LERTLLGGQSFRWR----SICDGNRTKYGGVVFNTY-WVLQQEESFITYEAYGTSSPLAT 90
Query: 292 NSVETMLKEYFRLDENLPELYAEWSNRDAFF 322
+++ +Y R+D +L +W ++D F
Sbjct: 91 KDYSSLISDYLRVDFDLKVNQKDWLSKDDNF 121
>sp|P53397|OGG1_YEAST N-glycosylase/DNA lyase OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=OGG1 PE=1 SV=1
Length = 376
Score = 129 bits (324), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 120/441 (27%), Positives = 178/441 (40%), Gaps = 109/441 (24%)
Query: 12 GKILCPAIELSLTLTLLGGQSFRW---KQLT--SDEKKLGNRFQGVFKECVWTLWADPSY 66
GK+ EL L L GQSFRW ++L S K+G Q + + +
Sbjct: 6 GKLAINKSELCLANVLQAGQSFRWIWDEKLNQYSTTMKIGQ--QEKYSVVILRQDEENEI 63
Query: 67 LHYQVFSQHKLNANSVETMLKEYFRLDENLPELYAE-WSNRDAFFRQTCGDFVGIRMLNQ 125
L + N ++++T L +YFRLD +L L+ W D F + GIR+L Q
Sbjct: 64 LEFVAVGDCG-NQDALKTHLMKYFRLDVSLKHLFDNVWIPSDKAFAKLSPQ--GIRILAQ 120
Query: 126 DLTENIFSFLCSSNNNIARISGMIDKMCKEYGTLICTLDSDGNLVGDCEKGRSHAKSCPA 185
+ E + SF+CSSNNNI+RI+ M + +C +G LI T+D
Sbjct: 121 EPWETLISFICSSNNNISRITRMCNSLCSNFGNLITTIDG-------------------- 160
Query: 186 VTKFFAFPSIDALARPAVEAKLRQLGFGYRAKFIQKSAEYIIQGGGESWLERLGGKSYEE 245
+ +FP+ + L A EAKLR+LGFGYR A+YII
Sbjct: 161 -VAYHSFPTSEELTSRATEAKLRELGFGYR-------AKYII------------------ 194
Query: 246 AREELQRLPGIGAKVGDGVFKEHVWTLWADPSYLHYQVYSQHKLNTNSVETMLKEYFRLD 305
E ++L A+ ++ ++ D Y+ +H ++ N V
Sbjct: 195 --ETARKLVNDKAEANITSDTTYLQSICKDA---QYEDVREHLMSYNGV----------- 238
Query: 306 ENLPELYAEWSNRDAFFRQTCGDFVADCICLMSLSHLQAVPVDTHV-------YQIACNH 358
G VADC+CLM L VPVD HV YQI+ N
Sbjct: 239 ---------------------GPKVADCVCLMGLHMDGIVPVDVHVSRIAKRDYQISANK 277
Query: 359 YHFQKSTSKTLTPAV--------YNQIRAFFADKFGKYAGWAHSILFCADLKKFQAKPGE 410
H ++ +K + + IR K+G YAGWA +LF ++
Sbjct: 278 NHLKELRTKYNALPISRKKINLELDHIRLMLFKKWGSYAGWAQGVLFSKEIGGTSGSTTT 337
Query: 411 EKVGKRESGTITETPGAVIEK 431
+ KR+ I ET V ++
Sbjct: 338 GTIKKRKWDMIKETEAIVTKQ 358
>sp|Q9FNY7|OGG1_ARATH N-glycosylase/DNA lyase OGG1 OS=Arabidopsis thaliana GN=OGG1 PE=1
SV=1
Length = 365
Score = 111 bits (277), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 80/244 (32%), Positives = 114/244 (46%), Gaps = 31/244 (12%)
Query: 20 ELSLTLTLLGGQSFRWKQLTSDEKKLGNRFQGVFKECVWTLWADPSYLHYQVFSQHKLNA 79
EL+L LT GQ+FRWK K ++ G + +L P +
Sbjct: 49 ELTLPLTFPTGQTFRWK------KTGAIQYSGTIGPHLVSLRQRPGDDAVSYCVHCSTSP 102
Query: 80 NSVETMLKEYFRLDENLPELYAEWSNRDAFFRQTCGDFVGIRMLNQDLTENIFSFLCSSN 139
S E L ++ + +L EL++++S +D F + G R+L QD E + FLCSSN
Sbjct: 103 KSAELALLDFLNAEISLAELWSDFSKKDPRFGELARHLRGARVLRQDPLECLIQFLCSSN 162
Query: 140 NNIARISGMIDKMCKEYGTLICTLDSDGNLVGDCEKGRSHAKSCPAVTKFFAFPSIDALA 199
NNIARI+ M+D + S G +GD + +F FPS+D L+
Sbjct: 163 NNIARITKMVD-----------FVSSLGLHLGDIDG-----------FEFHQFPSLDRLS 200
Query: 200 RPAVEAKLRQLGFGYRAKFIQKSAEYI--IQGGGESWLERLGGKSYEEAREELQRLPGIG 257
R E + R+ GFGYRAK+I + + GGG WL L +EA L LPG+G
Sbjct: 201 R-VSEEEFRKAGFGYRAKYITGTVNALQAKPGGGNEWLLSLRKVELQEAVAALCTLPGVG 259
Query: 258 AKVG 261
KV
Sbjct: 260 PKVA 263
Score = 72.8 bits (177), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 35/75 (46%), Positives = 46/75 (61%), Gaps = 1/75 (1%)
Query: 327 GDFVADCICLMSLSHLQAVPVDTHVYQIACNHYHFQKSTSKTLTPAVYNQIRAFFADKFG 386
G VA CI L SL A+PVDTHV+QIA N Y LTP ++ ++ F K+G
Sbjct: 259 GPKVAACIALFSLDQHSAIPVDTHVWQIATN-YLLPDLAGAKLTPKLHGRVAEAFVSKYG 317
Query: 387 KYAGWAHSILFCADL 401
+YAGWA ++LF A+L
Sbjct: 318 EYAGWAQTLLFIAEL 332
>sp|O27397|OGG1_METTH Probable N-glycosylase/DNA lyase OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=MTH_1342 PE=3 SV=1
Length = 312
Score = 45.8 bits (107), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 71/156 (45%), Gaps = 24/156 (15%)
Query: 119 GIRM-LNQDLTENIFSFLCSSNNNIARISGMIDKMCKEYGTLICTLDSDGNLVGDCEKGR 177
G+R+ L +D E + S + S+N ++ R + I+ + + +G + G
Sbjct: 101 GLRLFLAKDPFECVISSIASANCSVVRWTRSIEDIRRLWGQ------------ANTFNGE 148
Query: 178 S-HAKSCPAVTKFFAFPSIDALARPAVEA-------KLRQLGFGYRAKFIQKSAEYIIQG 229
+ H P V A S++ L R LR G GYRA +I++++ + +
Sbjct: 149 TFHTFPSPHVLTGVAEGSLEDLQRAEDNLPSDFSFNDLRSCGVGYRAPYIRETSRILAE- 207
Query: 230 GGESWLERLGGKSYEEAREELQRLPGIGAKVGDGVF 265
E + R+ G Y++ARE L L G+G KV D +
Sbjct: 208 --EMDIRRIDGMDYDDARELLLELSGVGPKVADCIL 241
>sp|A6ZV70|CATT_YEAS7 Catalase T OS=Saccharomyces cerevisiae (strain YJM789) GN=CTT1 PE=3
SV=2
Length = 562
Score = 36.6 bits (83), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 35/87 (40%), Gaps = 12/87 (13%)
Query: 310 ELYAEWSNRDAFFRQTCGDFVADCICLMSLSHLQAVPVDTHVYQIACNHYHFQKSTSK-- 367
+ Y EW N D F T F+ D I H Q +H+ Q FQ +T
Sbjct: 124 KFYTEWGNHDWVFNNTPVFFLRDAIKFPVFIHSQKRDPQSHLNQ-------FQDTTIYWD 176
Query: 368 --TLTPAVYNQIRAFFADKFGKYAGWA 392
TL P +QI F D+ G A WA
Sbjct: 177 YLTLNPESIHQITYMFGDR-GTPASWA 202
>sp|P06115|CATT_YEAST Catalase T OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=CTT1 PE=1 SV=3
Length = 562
Score = 36.6 bits (83), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 35/87 (40%), Gaps = 12/87 (13%)
Query: 310 ELYAEWSNRDAFFRQTCGDFVADCICLMSLSHLQAVPVDTHVYQIACNHYHFQKSTSK-- 367
+ Y EW N D F T F+ D I H Q +H+ Q FQ +T
Sbjct: 124 KFYTEWGNHDWVFNNTPVFFLRDAIKFPVFIHSQKRDPQSHLNQ-------FQDTTIYWD 176
Query: 368 --TLTPAVYNQIRAFFADKFGKYAGWA 392
TL P +QI F D+ G A WA
Sbjct: 177 YLTLNPESIHQITYMFGDR-GTPASWA 202
>sp|Q3Z9C5|SYV_DEHE1 Valine--tRNA ligase OS=Dehalococcoides ethenogenes (strain 195)
GN=valS PE=3 SV=1
Length = 880
Score = 35.4 bits (80), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 8/75 (10%)
Query: 137 SSNNNIARISGMIDKMCKEYGTLICTLDSDGNL--VGDCEKGRSHAKSCPAVTKFFA--- 191
+ N N SGM K C+EY ++ L S G L + D H + C AV +
Sbjct: 308 TMNENAGPCSGMTAKACREY--VVSELKSLGLLLKIEDYTHSVGHCQRCSAVIEPMVSKQ 365
Query: 192 -FPSIDALARPAVEA 205
F ++ LA+PA+EA
Sbjct: 366 WFVKMEPLAKPALEA 380
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.135 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 180,933,180
Number of Sequences: 539616
Number of extensions: 7843476
Number of successful extensions: 18986
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 18936
Number of HSP's gapped (non-prelim): 28
length of query: 457
length of database: 191,569,459
effective HSP length: 121
effective length of query: 336
effective length of database: 126,275,923
effective search space: 42428710128
effective search space used: 42428710128
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)