Query psy4725
Match_columns 457
No_of_seqs 237 out of 1999
Neff 4.5
Searched_HMMs 29240
Date Sat Aug 17 00:17:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4725.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4725hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xhi_A N-glycosylase/DNA lyase 100.0 4.4E-66 1.5E-70 525.1 32.3 318 4-419 31-355 (360)
2 3i0w_A 8-oxoguanine-DNA-glycos 100.0 2.1E-61 7E-66 477.4 29.8 273 14-401 14-286 (290)
3 2jhn_A ALKA, 3-methyladenine D 100.0 1E-43 3.4E-48 351.2 24.1 253 25-401 28-286 (295)
4 4b21_A Probable DNA-3-methylad 100.0 6E-43 2.1E-47 336.4 20.1 203 87-400 17-225 (232)
5 1mpg_A ALKA, 3-methyladenine D 100.0 2.6E-41 9E-46 331.5 27.7 259 18-402 7-277 (282)
6 3s6i_A DNA-3-methyladenine gly 100.0 6.2E-38 2.1E-42 300.5 21.8 196 94-401 13-215 (228)
7 2yg9_A DNA-3-methyladenine gly 100.0 5E-37 1.7E-41 293.5 19.0 191 88-399 20-214 (225)
8 2h56_A DNA-3-methyladenine gly 100.0 9.4E-36 3.2E-40 285.8 19.9 200 87-401 13-214 (233)
9 3fhg_A Mjogg, N-glycosylase/DN 99.9 2.7E-25 9.4E-30 209.6 14.5 166 123-399 29-200 (207)
10 1orn_A Endonuclease III; DNA r 99.9 1.1E-24 3.8E-29 208.2 15.4 170 109-401 13-190 (226)
11 2abk_A Endonuclease III; DNA-r 99.9 6.2E-25 2.1E-29 207.2 13.1 166 109-399 9-182 (211)
12 1pu6_A 3-methyladenine DNA gly 99.9 9.3E-25 3.2E-29 207.7 11.2 144 124-383 27-176 (218)
13 1kg2_A A/G-specific adenine gl 99.9 1.1E-23 3.6E-28 200.7 17.3 161 123-403 26-192 (225)
14 3n0u_A Probable N-glycosylase/ 99.9 2.3E-23 8E-28 199.1 12.9 175 108-399 29-212 (219)
15 1kea_A Possible G-T mismatches 99.9 4.1E-22 1.4E-26 189.5 13.7 121 123-361 31-157 (221)
16 3fhf_A Mjogg, N-glycosylase/DN 99.9 7.3E-22 2.5E-26 188.3 13.4 176 106-399 18-207 (214)
17 3fsp_A A/G-specific adenine gl 99.9 2.7E-21 9.2E-26 195.5 16.4 155 124-399 36-197 (369)
18 3n5n_X A/G-specific adenine DN 99.8 6.2E-21 2.1E-25 189.0 14.4 120 125-362 47-172 (287)
19 4e9f_A Methyl-CPG-binding doma 99.7 3.1E-16 1.1E-20 143.6 12.7 116 123-360 27-147 (161)
20 2ihm_A POL MU, DNA polymerase 73.5 0.6 2E-05 47.3 -0.4 87 211-309 68-155 (360)
21 2fmp_A DNA polymerase beta; nu 70.6 0.76 2.6E-05 46.0 -0.4 90 207-309 59-151 (335)
22 2ztd_A Holliday junction ATP-d 70.0 6.4 0.00022 37.3 5.8 57 187-262 73-137 (212)
23 1jms_A Terminal deoxynucleotid 69.1 0.87 3E-05 46.5 -0.4 91 207-309 82-175 (381)
24 2bcq_A DNA polymerase lambda; 66.4 1.8 6.3E-05 43.3 1.3 52 207-264 59-112 (335)
25 3b0x_A DNA polymerase beta fam 57.6 10 0.00036 40.2 5.3 52 207-264 55-109 (575)
26 1z00_B DNA repair endonuclease 57.5 5.5 0.00019 32.4 2.4 17 243-259 13-29 (84)
27 1ixr_A Holliday junction DNA h 57.3 6 0.00021 36.7 2.9 24 242-265 66-89 (191)
28 1cuk_A RUVA protein; DNA repai 56.1 8.2 0.00028 36.1 3.7 23 242-264 67-89 (203)
29 3vdp_A Recombination protein R 51.5 9.5 0.00032 36.4 3.3 17 243-259 21-37 (212)
30 2a1j_A DNA repair endonuclease 50.2 4 0.00014 31.1 0.5 13 247-259 3-15 (63)
31 1kft_A UVRC, excinuclease ABC 48.1 26 0.00088 27.1 4.9 13 247-259 23-35 (78)
32 1vdd_A Recombination protein R 47.0 11 0.00039 36.2 3.1 17 243-259 7-23 (228)
33 1z00_A DNA excision repair pro 42.9 36 0.0012 26.8 5.1 15 245-259 16-30 (89)
34 1x2i_A HEF helicase/nuclease; 42.4 47 0.0016 24.7 5.5 16 244-259 10-25 (75)
35 1ixr_A Holliday junction DNA h 42.2 13 0.00043 34.5 2.6 58 188-264 58-123 (191)
36 2ihm_A POL MU, DNA polymerase 41.6 41 0.0014 33.9 6.4 44 210-264 34-77 (360)
37 2a1j_B DNA excision repair pro 41.3 38 0.0013 27.0 5.0 14 246-259 30-43 (91)
38 3gfk_B DNA-directed RNA polyme 37.5 22 0.00076 28.7 3.0 42 207-259 18-59 (79)
39 2w9m_A Polymerase X; SAXS, DNA 37.2 28 0.00096 37.0 4.6 21 244-264 93-113 (578)
40 2duy_A Competence protein come 31.9 20 0.00067 27.6 1.8 13 247-259 26-38 (75)
41 2bcq_A DNA polymerase lambda; 30.7 37 0.0013 33.8 4.0 43 211-264 31-73 (335)
42 4glx_A DNA ligase; inhibitor, 29.5 44 0.0015 36.1 4.6 31 193-224 469-501 (586)
43 2fmp_A DNA polymerase beta; nu 29.0 47 0.0016 33.0 4.4 40 213-263 33-72 (335)
44 2edu_A Kinesin-like protein KI 27.4 91 0.0031 25.1 5.2 12 248-259 40-51 (98)
45 3q8k_A Flap endonuclease 1; he 25.9 7.8 0.00027 38.8 -1.9 13 252-264 236-248 (341)
46 2ztd_A Holliday junction ATP-d 25.2 34 0.0012 32.2 2.4 25 242-266 82-106 (212)
47 1jms_A Terminal deoxynucleotid 24.7 50 0.0017 33.5 3.7 44 210-264 53-96 (381)
48 1ucv_A Ephrin type-A receptor 23.6 1.2E+02 0.004 23.8 5.0 29 192-221 31-62 (81)
49 3b4s_A Protein LUXT; APC91483. 23.0 1.7E+02 0.0059 24.4 6.0 59 82-154 7-67 (94)
50 4gfj_A Topoisomerase V; helix- 22.7 33 0.0011 36.4 1.9 77 150-265 532-639 (685)
51 1z3e_B DNA-directed RNA polyme 22.1 54 0.0019 25.9 2.7 42 207-259 11-52 (73)
52 3c1y_A DNA integrity scanning 21.9 1E+02 0.0036 31.5 5.4 38 190-228 333-372 (377)
53 1s5l_U Photosystem II 12 kDa e 21.2 28 0.00094 31.0 0.9 12 248-259 63-74 (134)
No 1
>2xhi_A N-glycosylase/DNA lyase; lyase-DNA complex, lyase/DNA complex, separation-OF-function helix-hairpin-helix, DNA repair; HET: 8OG; 1.55A {Homo sapiens} PDB: 1ko9_A 1lwy_A* 1hu0_A* 1lwv_A* 1lww_A* 2noe_A* 2noh_A* 2nol_A* 1n3c_A* 1fn7_A* 2noz_A* 1yqk_A 1yqr_A* 1yql_A* 1yqm_A* 2noi_A 1ebm_A* 1m3q_A* 1m3h_A* 1n39_A* ...
Probab=100.00 E-value=4.4e-66 Score=525.12 Aligned_cols=318 Identities=42% Similarity=0.780 Sum_probs=276.7
Q ss_pred CCcccccccccccCCcccccccccccccccceeecCCCCcccCCeEEEEECCeEEEEEEcCCeEEEEEEeCCCC----CH
Q psy4725 4 GNTVHHLSGKILCPAIELSLTLTLLGGQSFRWKQLTSDEKKLGNRFQGVFKECVWTLWADPSYLHYQVFSQHKL----NA 79 (457)
Q Consensus 4 ~~~~~~~~~~l~~~~~~l~L~~tL~~GQ~FrW~~~~~~~~~~~~~~~gv~~~~v~~l~q~~~~L~y~~~~~~~~----~~ 79 (457)
.++....|++|+|++.+|||.+||.|||||||++.+ ++.|.||++++|+.|+|+++.+.|+++++... +.
T Consensus 31 ~~~~~~~w~~l~~~~~~~~L~~tl~~GQ~Frw~~~~------d~~w~~v~~~~v~~l~q~~~~v~~~~~~~~~~~~~~~~ 104 (360)
T 2xhi_A 31 LASTPALWASIPCPRSELRLDLVLPSGQSFRWREQS------PAHWSGVLADQVWTLTQTEEQLHCTVYRGDKSQASRPT 104 (360)
T ss_dssp TTTCGGGCEEEECCTTTCCHHHHTTTTSCSCCEEEE------TTEEEEEETTEEEEEEECSSEEEEEEECCSSSCCCCCC
T ss_pred ccCCcCCceEecCCccccCHHHHcCCCCccceeecC------CCeEEEEECCEEEEEEEcCCEEEEEEecCcccccccch
Confidence 466678999999999999999999999999999986 57999999999999999999999998876432 33
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHhccChhHHHhhhhhCCccccCCCHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCc
Q psy4725 80 NSVETMLKEYFRLDENLPELYAEWSNRDAFFRQTCGDFVGIRMLNQDLTENIFSFLCSSNNNIARISGMIDKMCKEYGTL 159 (457)
Q Consensus 80 ~~~~~~lr~YFdLD~DL~~l~~~~~~~Dp~L~~li~~~~GLRILrqDPfE~LIsfIcSQNnnI~rI~~mi~rL~~~yGe~ 159 (457)
.++.+.+++||+||.|++.+++.|...||.|+++++.++|+|++++||||+||++|||||+|++++.+++++|+++||++
T Consensus 105 ~~~~~~~r~~fdLd~d~~~~~~~l~~~Dp~l~~l~~~~~glR~~~~dpfE~LV~~ILsQq~s~~~a~~~~~rL~~~~G~~ 184 (360)
T 2xhi_A 105 PDELEAVRKYFQLDVTLAQLYHHWGSVDSHFQEVAQKFQGVRLLRQDPIECLFSFICSSNNNIARITGMVERLCQAFGPR 184 (360)
T ss_dssp HHHHHHHHHHTTTTSCHHHHHHHHHHHCHHHHHHHHHSTTCCCCCCCHHHHHHHHHTTTTSCHHHHHHHHHHHHHHHSCE
T ss_pred HHHHHHHHHhcccCCCHHHHHHHHHhhCHHHHHHHHHcCCCCCCCCCHHHHHHHHHHhCcCcHHHHHHHHHHHHHHhCCC
Confidence 47789999999999999999999988999999999999999999999999999999999999999999999999999998
Q ss_pred ccccCCCCCCcCcccCCCCCCCCCCcccccccCCcHHHHcCCChHHHHHhcCCchhHHHHHHHHHHHHHc-CCCCcchhh
Q psy4725 160 ICTLDSDGNLVGDCEKGRSHAKSCPAVTKFFAFPSIDALARPAVEAKLRQLGFGYRAKFIQKSAEYIIQG-GGESWLERL 238 (457)
Q Consensus 160 l~~~~g~~~~~~~~~~~r~~~~~~p~~~~~ysFPTpe~LA~~~~Ee~LR~~g~gYRAkyI~~~A~~~~e~-~G~~~l~~l 238 (457)
+++.+| ..+|.||||++|++++.++.||.+||||||+||+++|+++.++ +|+.+|+.|
T Consensus 185 ~~~~~g---------------------~~~~~fPtpe~La~~~~ee~Lr~~Gl~~RA~~I~~~A~~i~~~~~G~~~L~~l 243 (360)
T 2xhi_A 185 LIQLDD---------------------VTYHGFPSLQALAGPEVEAHLRKLGLGYRARYVSASARAILEEQGGLAWLQQL 243 (360)
T ss_dssp EEEETT---------------------EEEECCCCHHHHTSTTHHHHHHHTTCTTHHHHHHHHHHHHHHTTCTHHHHHGG
T ss_pred cccCCC---------------------cccccCCCHHHHHcCCHHHHHHHcCCcHHHHHHHHHHHHHHhccCCccCHHHH
Confidence 866655 6789999999999987667899999999999999999999985 456789999
Q ss_pred cCCCHHHHHHHhhcCCCccccCCCcccccccccccCCCccchhhhhhccccccchHHHHHHHHhhhhcCchhhHhhhhch
Q psy4725 239 GGKSYEEAREELQRLPGIGAKVGDGVFKEHVWTLWADPSYLHYQVYSQHKLNTNSVETMLKEYFRLDENLPELYAEWSNR 318 (457)
Q Consensus 239 ~~~~~~eare~L~~LpGVGpK~a~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (457)
..++++++++.|++|||||||
T Consensus 244 ~~~~~~~~~~~L~~LpGIGp~----------------------------------------------------------- 264 (360)
T 2xhi_A 244 RESSYEEAHKALCILPGVGTC----------------------------------------------------------- 264 (360)
T ss_dssp GTSCHHHHHHHHTTSTTCCHH-----------------------------------------------------------
T ss_pred hcCCHHHHHHHHHhCCCCCHH-----------------------------------------------------------
Confidence 999999999999999999999
Q ss_pred hhhhhccCChHHHHHHHHHhcCCCCccccchhHHHHHHhhcccCC--CCCCCCCHHHHHHHHHHHHhhhcCcHHHHHHHH
Q psy4725 319 DAFFRQTCGDFVADCICLMSLSHLQAVPVDTHVYQIACNHYHFQK--STSKTLTPAVYNQIRAFFADKFGKYAGWAHSIL 396 (457)
Q Consensus 319 ~~~~~~~~~~~vAdci~l~~l~~~~~~PvD~~v~~~a~~~y~~~~--~~~~~lt~~~y~~i~~~~~~~fg~~ag~A~~~l 396 (457)
|||||++|+++++++|||||||.|++.+.|.... ...++++++.|.++++++.+.||||+||||+||
T Consensus 265 -----------TA~~ill~alg~pd~fpvDthV~Ri~~r~~gl~~~~~~~k~~~~~~~~~l~~~~~e~w~p~~~~a~~yL 333 (360)
T 2xhi_A 265 -----------VADKICLMALDKPQAVPVNVHMWHIAQRDYSWHPTTSQAKGPSPQTNKELGNFFRSLWGPYAGWAQAVL 333 (360)
T ss_dssp -----------HHHHHHHHHSCCTTCCCCSHHHHHHHHHHHCCCCSSCSCSSCCHHHHHHHHHHHHHHHCTTHHHHHHHH
T ss_pred -----------HHHHHHHHhCCCCCEEEecHHHHHHHHHHhCcccccccccCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999875322 122567899999999999999999999999999
Q ss_pred HhccccccccCCCcccccccccC
Q psy4725 397 FCADLKKFQAKPGEEKVGKRESG 419 (457)
Q Consensus 397 f~~~l~~~~~~~~~~~~~~~~~~ 419 (457)
|+++++++..+. +.+.|||+.+
T Consensus 334 w~~~~~~~~~~~-~~~~~~~~~~ 355 (360)
T 2xhi_A 334 FSADLRQSRHAQ-EPPAKRRKGS 355 (360)
T ss_dssp HHHHHCC----------------
T ss_pred HHhhcccCCccc-Ccchhhhhcc
Confidence 999998877654 5555555444
No 2
>3i0w_A 8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8-OXOG, 8OXOG, glycosylase, cytosine, hydrolase,lyase/DNA complex; HET: 8OG; 1.73A {Clostridium acetobutylicum} PDB: 3i0x_A* 3f10_A* 3f0z_A
Probab=100.00 E-value=2.1e-61 Score=477.42 Aligned_cols=273 Identities=30% Similarity=0.476 Sum_probs=249.0
Q ss_pred cccCCcccccccccccccccceeecCCCCcccCCeEEEEECCeEEEEEEcCCeEEEEEEeCCCCCHHHHHHHHHHhhcCC
Q psy4725 14 ILCPAIELSLTLTLLGGQSFRWKQLTSDEKKLGNRFQGVFKECVWTLWADPSYLHYQVFSQHKLNANSVETMLKEYFRLD 93 (457)
Q Consensus 14 l~~~~~~l~L~~tL~~GQ~FrW~~~~~~~~~~~~~~~gv~~~~v~~l~q~~~~L~y~~~~~~~~~~~~~~~~lr~YFdLD 93 (457)
+.....+|||++||.|||||||++.+ ++.|.||++++|+.|+|+++.+.+. ++ +.+++.+.+++||+||
T Consensus 14 ~~~~~~~~~l~~tl~~GQ~Frw~~~~------~~~~~~v~~~~~~~l~q~~~~~~~~--~~---~~~~~~~~~~~~fdLd 82 (290)
T 3i0w_A 14 IVRNVENFELKDIFDCGQCFRWHRQE------NGNYIGIAFEKVVEVQKIGEDVVIY--NI---NEEEFKNVWSEYFDLY 82 (290)
T ss_dssp EEESCCSCCHHHHHSSSSCSSEEECT------TSCEEEEETTEEEEEEEETTEEEEE--TC---CHHHHHHTHHHHTTTT
T ss_pred EEeecccCcHHHHhCccCccCcEEeC------CCeEEEEECCEEEEEEEcCCEEEEE--cC---CHHHHHHHHHHHcCCC
Confidence 34556789999999999999999987 5789999999999999999987543 32 4678889999999999
Q ss_pred CCHHHHHHHHhccChhHHHhhhhhCCccccCCCHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCcccccCCCCCCcCcc
Q psy4725 94 ENLPELYAEWSNRDAFFRQTCGDFVGIRMLNQDLTENIFSFLCSSNNNIARISGMIDKMCKEYGTLICTLDSDGNLVGDC 173 (457)
Q Consensus 94 ~DL~~l~~~~~~~Dp~L~~li~~~~GLRILrqDPfE~LIsfIcSQNnnI~rI~~mi~rL~~~yGe~l~~~~g~~~~~~~~ 173 (457)
.|+.++++.|+ .||.|+++++.++|+|++++||||+||++|||||+|++++.+++++|+++||+++ ..+|
T Consensus 83 ~d~~~~~~~l~-~Dp~l~~~~~~~~glR~~~~dpfE~Lv~~IlsQq~s~~~a~~~~~rL~~~~G~~~-~~~g-------- 152 (290)
T 3i0w_A 83 RDYGEIKKELS-RDPLLKKSVDFGEGIRILRQDPFEILLSFIISANNRIPMIKKCINNISEKAGKKL-EYKG-------- 152 (290)
T ss_dssp SCHHHHHHHHT-TSHHHHHHHHHTTTCCCCCCCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSCEE-EETT--------
T ss_pred CCHHHHHHHHh-hCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHhCcccHHHHHHHHHHHHHHhCCCc-ccCC--------
Confidence 99999999997 8999999999999999999999999999999999999999999999999999988 5554
Q ss_pred cCCCCCCCCCCcccccccCCcHHHHcCCChHHHHHhcCCchhHHHHHHHHHHHHHcCCCCcchhhcCCCHHHHHHHhhcC
Q psy4725 174 EKGRSHAKSCPAVTKFFAFPSIDALARPAVEAKLRQLGFGYRAKFIQKSAEYIIQGGGESWLERLGGKSYEEAREELQRL 253 (457)
Q Consensus 174 ~~~r~~~~~~p~~~~~ysFPTpe~LA~~~~Ee~LR~~g~gYRAkyI~~~A~~~~e~~G~~~l~~l~~~~~~eare~L~~L 253 (457)
..++.||||++|+.++ +++|+.+|+||||+||+++|+++.+ |..+|+.|.+++++++++.|++|
T Consensus 153 -------------~~~~~fPtpe~la~~~-~e~L~~~g~g~Ra~~I~~~A~~i~~--g~~~l~~l~~~~~~~~~~~L~~l 216 (290)
T 3i0w_A 153 -------------KIYYAFPTVDKLHEFT-EKDFEECTAGFRAKYLKDTVDRIYN--GELNLEYIKSLNDNECHEELKKF 216 (290)
T ss_dssp -------------EEEECCCCHHHHTTCC-HHHHHHTTCGGGHHHHHHHHHHHHT--TSSCHHHHHHSCHHHHHHHHTTS
T ss_pred -------------cccccCCcHHHHHCCC-HHHHHHcCCchHHHHHHHHHHHHHh--CCCCHHHHhcCCHHHHHHHHHhC
Confidence 6789999999999986 5689999999999999999999998 77889999999999999999999
Q ss_pred CCccccCCCcccccccccccCCCccchhhhhhccccccchHHHHHHHHhhhhcCchhhHhhhhchhhhhhccCChHHHHH
Q psy4725 254 PGIGAKVGDGVFKEHVWTLWADPSYLHYQVYSQHKLNTNSVETMLKEYFRLDENLPELYAEWSNRDAFFRQTCGDFVADC 333 (457)
Q Consensus 254 pGVGpK~a~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vAdc 333 (457)
|||||| ||||
T Consensus 217 pGIG~~----------------------------------------------------------------------TA~~ 226 (290)
T 3i0w_A 217 MGVGPQ----------------------------------------------------------------------VADC 226 (290)
T ss_dssp TTCCHH----------------------------------------------------------------------HHHH
T ss_pred CCcCHH----------------------------------------------------------------------HHHH
Confidence 999999 9999
Q ss_pred HHHHhcCCCCccccchhHHHHHHhhcccCCCCCCCCCHHHHHHHHHHHHhhhcCcHHHHHHHHHhccc
Q psy4725 334 ICLMSLSHLQAVPVDTHVYQIACNHYHFQKSTSKTLTPAVYNQIRAFFADKFGKYAGWAHSILFCADL 401 (457)
Q Consensus 334 i~l~~l~~~~~~PvD~~v~~~a~~~y~~~~~~~~~lt~~~y~~i~~~~~~~fg~~ag~A~~~lf~~~l 401 (457)
|++|+++++++||||+||+|++.++|.... .+ +.++++++.+.||||+||||+|||++..
T Consensus 227 ill~~lg~pd~fpvD~~v~r~~~rl~~~~~-----~~---~~~i~~~~~~~~~p~~~~A~~~Lw~~~R 286 (290)
T 3i0w_A 227 IMLFSMQKYSAFPVDTWVKKAMMSLYVAPD-----VS---LKKIRDFGREKFGSLSGFAQQYLFYYAR 286 (290)
T ss_dssp HHHHHHCCTTCCCCCHHHHHHHHHHTSCTT-----CC---HHHHHHHHHHHHGGGHHHHHHHHHHHHH
T ss_pred HHHHhCCCCCcceecHHHHHHHHHhcCCCC-----CC---HHHHHHHHHhhcchHHHHHHHHHHHhhh
Confidence 999999999999999999999999987431 23 4789999889999999999999998754
No 3
>2jhn_A ALKA, 3-methyladenine DNA-glycosylase; DNA repair, N1-methyladenine, N3-methylcytosine, hyperthermophiles, hydrolase; HET: MBO MES; 1.8A {Archaeoglobus fulgidus} PDB: 2jhj_A
Probab=100.00 E-value=1e-43 Score=351.18 Aligned_cols=253 Identities=20% Similarity=0.231 Sum_probs=208.5
Q ss_pred cccccccccceeecCCCCcccCCeEEEEECCeEEEEEEc-CCeEEEEEEeCCCCCHHHHHHHHHHhhcCCCCHHHHHHHH
Q psy4725 25 LTLLGGQSFRWKQLTSDEKKLGNRFQGVFKECVWTLWAD-PSYLHYQVFSQHKLNANSVETMLKEYFRLDENLPELYAEW 103 (457)
Q Consensus 25 ~tL~~GQ~FrW~~~~~~~~~~~~~~~gv~~~~v~~l~q~-~~~L~y~~~~~~~~~~~~~~~~lr~YFdLD~DL~~l~~~~ 103 (457)
..+.+|+.+|+..+++ +..+++|++. ++.+.++ ......+.+.+.+.+++|||||.|++.+ ++
T Consensus 28 e~~~~~~~~R~~~~~~-------------~~~~v~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~fdLd~d~~~~--~~ 91 (295)
T 2jhn_A 28 DVVESGVWRRAIVLDG-------------RAVAVMAYPESERTIVVE-GNFENREWEAVRRKLVEYLGLQNPEELY--RF 91 (295)
T ss_dssp CEEETTEEEEEEEETT-------------EEEEEEEEEEETTEEEEE-ESSCGGGHHHHHHHHHHHHTCSCCHHHH--HH
T ss_pred EEEeCCEEEEEEEECC-------------eeEEEEEEECCCCEEEEe-cCCchhhHHHHHHHHHHHhCCCCCHHHH--Hh
Confidence 3456677777777651 2456778753 4556555 1211223567889999999999999999 67
Q ss_pred hccChhHHHhhhhhCCccccC---CCHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCcccccCCCCCCcCcccCCCCCC
Q psy4725 104 SNRDAFFRQTCGDFVGIRMLN---QDLTENIFSFLCSSNNNIARISGMIDKMCKEYGTLICTLDSDGNLVGDCEKGRSHA 180 (457)
Q Consensus 104 ~~~Dp~L~~li~~~~GLRILr---qDPfE~LIsfIcSQNnnI~rI~~mi~rL~~~yGe~l~~~~g~~~~~~~~~~~r~~~ 180 (457)
...||.|+.+++.++|+|+.+ +||||+||++|||||+|++++.+++++|+++||+++. .+|
T Consensus 92 ~~~D~~l~~l~~~~~glr~~~~~~~d~fe~lv~~Il~Qq~s~~~a~~~~~rL~~~~G~~~~-~~g--------------- 155 (295)
T 2jhn_A 92 MDGDEKLRMLKNRFYGFGRAGLMSMSVFEGIAKAIIQQQISFVVAEKLAAKIVGRFGDEVE-WNG--------------- 155 (295)
T ss_dssp HHTSHHHHHHHHHTTTCCSCCCSCSSHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHSCEEE-ETT---------------
T ss_pred hccCHHHHHHHHHcCCCCCCCCCCCCHHHHHHHHHHcCcccHHHHHHHHHHHHHHhCCCCC-CCC---------------
Confidence 789999999999999999976 9999999999999999999999999999999999873 333
Q ss_pred CCCCcccccccCCcHHHHcCCChHHHHHhcCCchh-HHHHHHHHHHHHHcCCCCcchhhcCCCHHHHHHHhhcCCCcccc
Q psy4725 181 KSCPAVTKFFAFPSIDALARPAVEAKLRQLGFGYR-AKFIQKSAEYIIQGGGESWLERLGGKSYEEAREELQRLPGIGAK 259 (457)
Q Consensus 181 ~~~p~~~~~ysFPTpe~LA~~~~Ee~LR~~g~gYR-AkyI~~~A~~~~e~~G~~~l~~l~~~~~~eare~L~~LpGVGpK 259 (457)
..+|.||||++|++++ +++|+.|||++| |+||+++|++ | +++.|..++++++++.|++|||||||
T Consensus 156 ------~~~~~fPtp~~la~~~-~~~Lr~~G~~~rKa~~i~~~A~~-----g--~l~~l~~~~~~e~~~~L~~lpGIG~~ 221 (295)
T 2jhn_A 156 ------LKFYGFPTQEAILKAG-VEGLRECGLSRRKAELIVEIAKE-----E--NLEELKEWGEEEAYEYLTSFKGIGRW 221 (295)
T ss_dssp ------EEEECCCCHHHHHHHH-HHHHHHTTCCHHHHHHHHHHHTC-----S--SGGGGGGSCHHHHHHHHHTSTTCCHH
T ss_pred ------CccccCCCHHHHHcCC-HHHHHHcCCCHHHHHHHHHHHHC-----C--CHhhhhcCCHHHHHHHHhcCCCcCHH
Confidence 5789999999999874 568999999996 9999999987 3 67788889999999999999999999
Q ss_pred CCCcccccccccccCCCccchhhhhhccccccchHHHHHHHHhhhhcCchhhHhhhhchhhhhhccCChHHHHHHHHHhc
Q psy4725 260 VGDGVFKEHVWTLWADPSYLHYQVYSQHKLNTNSVETMLKEYFRLDENLPELYAEWSNRDAFFRQTCGDFVADCICLMSL 339 (457)
Q Consensus 260 ~a~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vAdci~l~~l 339 (457)
|||||++|++
T Consensus 222 ----------------------------------------------------------------------TA~~ill~~l 231 (295)
T 2jhn_A 222 ----------------------------------------------------------------------TAELVLSIAL 231 (295)
T ss_dssp ----------------------------------------------------------------------HHHHHHHHTT
T ss_pred ----------------------------------------------------------------------HHHHHHHHcc
Confidence 9999999999
Q ss_pred CCCCcccc-chhHHHHHHhhcccCCCCCCCCCHHHHHHHHHHHHhhhcCcHHHHHHHHHhccc
Q psy4725 340 SHLQAVPV-DTHVYQIACNHYHFQKSTSKTLTPAVYNQIRAFFADKFGKYAGWAHSILFCADL 401 (457)
Q Consensus 340 ~~~~~~Pv-D~~v~~~a~~~y~~~~~~~~~lt~~~y~~i~~~~~~~fg~~ag~A~~~lf~~~l 401 (457)
+ +++||| |.|+++++.+.|.... +..+ +.+++++ .+.|+||+|||++|||++..
T Consensus 232 g-~d~fpvdD~~~rr~~~~~~g~~~---~~~~---~~~~~~~-~e~~~p~r~~a~~~Lw~~~~ 286 (295)
T 2jhn_A 232 G-KNVFPADDLGVRRAVSRLYFNGE---IQSA---EKVREIA-RERFGRFARDILFYLFLYDR 286 (295)
T ss_dssp C-CCCCCTTCHHHHHHHHHHHSTTC---CCCH---HHHHHHH-HHHTGGGHHHHHHHHHHHHH
T ss_pred C-CCcccchHHHHHHHHHHHhcCCC---CCCC---HHHHHHH-HHhcccHHHHHHHHHHHhcc
Confidence 9 999999 5677778888875321 1233 4566664 78999999999999999753
No 4
>4b21_A Probable DNA-3-methyladenine glycosylase 2; hydrolase-DNA complex, helix-hairpin-helix; HET: BGC 3DR; 1.45A {Schizosaccharomyces pombe} PDB: 4b22_A* 4b23_A* 4b24_A*
Probab=100.00 E-value=6e-43 Score=336.41 Aligned_cols=203 Identities=16% Similarity=0.193 Sum_probs=180.9
Q ss_pred HHhhcCCCCHHHHHHHHhccChhHHHhhhhhCCccc---cCCCHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCccccc
Q psy4725 87 KEYFRLDENLPELYAEWSNRDAFFRQTCGDFVGIRM---LNQDLTENIFSFLCSSNNNIARISGMIDKMCKEYGTLICTL 163 (457)
Q Consensus 87 r~YFdLD~DL~~l~~~~~~~Dp~L~~li~~~~GLRI---LrqDPfE~LIsfIcSQNnnI~rI~~mi~rL~~~yGe~l~~~ 163 (457)
.-+|+||.|+.++++.|++.||.|+++++.++|+|+ .++||||+||++|||||+|++++.+++.+|+++||++
T Consensus 17 ~~~ldld~d~~~~~~~L~~~Dp~l~~li~~~~g~rl~~~~~~dpfe~Lv~~Il~Qq~s~~~a~~~~~rL~~~~G~~---- 92 (232)
T 4b21_A 17 GSHMSKDSDYKRAEKHLSSIDNKWSSLVKKVGPCTLTPHPEHAPYEGIIRAITSQKLSDAATNSIINKFCTQCSDN---- 92 (232)
T ss_dssp ----CHHHHHHHHHHHHTTTCHHHHHHHHHHCSCCCCCCTTSCHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHCSS----
T ss_pred CCcCCCccCHHHHHHHHHhhCHHHHHHHHHcCCCCCCCCCCCCHHHHHHHHHHhCcCcHHHHHHHHHHHHHHhCCC----
Confidence 458999999999999998889999999999999996 4679999999999999999999999999999999852
Q ss_pred CCCCCCcCcccCCCCCCCCCCcccccccCCcHHHHcCCChHHHHHhcCCchh-HHHHHHHHHHHHHcCCCC-cchhhcCC
Q psy4725 164 DSDGNLVGDCEKGRSHAKSCPAVTKFFAFPSIDALARPAVEAKLRQLGFGYR-AKFIQKSAEYIIQGGGES-WLERLGGK 241 (457)
Q Consensus 164 ~g~~~~~~~~~~~r~~~~~~p~~~~~ysFPTpe~LA~~~~Ee~LR~~g~gYR-AkyI~~~A~~~~e~~G~~-~l~~l~~~ 241 (457)
+.||||++|++++ +++||.|||++| |+||+++|+++.+ |.. +++.|..+
T Consensus 93 --------------------------~~fPtpe~la~~~-~e~Lr~~Gl~~~Ka~~l~~~A~~~~~--g~~p~l~~l~~~ 143 (232)
T 4b21_A 93 --------------------------DEFPTPKQIMETD-VETLHECGFSKLKSQEIHIVAEAALN--KQIPSKSEIEKM 143 (232)
T ss_dssp --------------------------SSCCCHHHHHTSC-HHHHHTTTCCHHHHHHHHHHHHHHHT--TCSCCHHHHHHS
T ss_pred --------------------------CCCCCHHHHHcCC-HHHHHHcCCcHHHHHHHHHHHHHHHh--CCCCCHHHHHcC
Confidence 4699999999986 567999999996 9999999999998 777 79999999
Q ss_pred CHHHHHHHhhcCCCccccCCCcccccccccccCCCccchhhhhhccccccchHHHHHHHHhhhhcCchhhHhhhhchhhh
Q psy4725 242 SYEEAREELQRLPGIGAKVGDGVFKEHVWTLWADPSYLHYQVYSQHKLNTNSVETMLKEYFRLDENLPELYAEWSNRDAF 321 (457)
Q Consensus 242 ~~~eare~L~~LpGVGpK~a~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (457)
+++++++.|++|||||||
T Consensus 144 ~~~~~~~~L~~l~GIG~~-------------------------------------------------------------- 161 (232)
T 4b21_A 144 SEEELMESLSKIKGVKRW-------------------------------------------------------------- 161 (232)
T ss_dssp CHHHHHHHHTTSTTCCHH--------------------------------------------------------------
T ss_pred CHHHHHHHHHhCCCcCHH--------------------------------------------------------------
Confidence 999999999999999999
Q ss_pred hhccCChHHHHHHHHHhcCCCCcccc-chhHHHHHHhhcccCCCCCCCCCHHHHHHHHHHHHhhhcCcHHHHHHHHHhcc
Q psy4725 322 FRQTCGDFVADCICLMSLSHLQAVPV-DTHVYQIACNHYHFQKSTSKTLTPAVYNQIRAFFADKFGKYAGWAHSILFCAD 400 (457)
Q Consensus 322 ~~~~~~~~vAdci~l~~l~~~~~~Pv-D~~v~~~a~~~y~~~~~~~~~lt~~~y~~i~~~~~~~fg~~ag~A~~~lf~~~ 400 (457)
|||||++|+++++++||| |+||.|++.+.|.... .+++ .++++ +.+.|+||+|||++|||++.
T Consensus 162 --------TA~~ill~alg~pd~fpv~D~~v~r~~~rl~~~~~----~~~~---~~~~~-~~e~w~P~rs~A~~yLw~~~ 225 (232)
T 4b21_A 162 --------TIEMYSIFTLGRLDIMPADDSTLKNEAKEFFGLSS----KPQT---EEVEK-LTKPCKPYRTIAAWYLWQIP 225 (232)
T ss_dssp --------HHHHHHHHTSCCSSCCCTTCHHHHHHHHHHTTCSS----CCCH---HHHHH-HTGGGTTCHHHHHHHHHTGG
T ss_pred --------HHHHHHHHhCCCCCeeeCccHHHHHHHHHHhCCCC----CCCH---HHHHH-HHHHccCHHHHHHHHHHHcC
Confidence 999999999999999999 9999999999986432 3455 45555 48999999999999999863
No 5
>1mpg_A ALKA, 3-methyladenine DNA glycosylase II; DNA repair, base excision, methylation, ALK hydrolase; 1.80A {Escherichia coli} SCOP: a.96.1.3 d.129.1.2 PDB: 1diz_A 1pvs_A* 3cvs_A* 3cvt_A* 3cw7_A* 3cwa_A* 3cws_A* 3cwt_A* 3cwu_A* 3d4v_A* 3ogd_A* 3oh9_A* 3oh6_A*
Probab=100.00 E-value=2.6e-41 Score=331.45 Aligned_cols=259 Identities=18% Similarity=0.181 Sum_probs=208.1
Q ss_pred Cccccccccccc-----ccccceeecCCCCcccCCeEEEEE-CC--eEEEEEEcC--CeEEEEEEeCCCCCHHHHHHHHH
Q psy4725 18 AIELSLTLTLLG-----GQSFRWKQLTSDEKKLGNRFQGVF-KE--CVWTLWADP--SYLHYQVFSQHKLNANSVETMLK 87 (457)
Q Consensus 18 ~~~l~L~~tL~~-----GQ~FrW~~~~~~~~~~~~~~~gv~-~~--~v~~l~q~~--~~L~y~~~~~~~~~~~~~~~~lr 87 (457)
+.+||+..+|.. ++++.|... +..|..+. ++ .+++|++.+ ..+.+++..+..+..+++.+.++
T Consensus 7 ~~P~~~~~~l~~l~~~~~~~~e~~~~-------~~y~r~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (282)
T 1mpg_A 7 QPPYDWSWMLGFLAARAVSSVETVAD-------SYYARSLAVGEYRGVVTAIPDIARHTLHINLSAGLEPVAAECLAKMS 79 (282)
T ss_dssp CSCCCHHHHHHHHHHHCCTTTEEECS-------SCEEEEEEETTEEEEEEEEEETTTTEEEEEECGGGGGGHHHHHHHHH
T ss_pred CCCCCHHHHHHHHhCCCCCCeEEEcC-------CEEEEEEEECCEeEEEEEEEcCCCcEEEEEEecCCCccHHHHHHHHH
Confidence 457999999887 887777543 23343433 44 489999874 45655554322234578889999
Q ss_pred HhhcCCCCHHHHHHHHhccChhHHHhhhhhCCccccC-CCHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCcccccCCC
Q psy4725 88 EYFRLDENLPELYAEWSNRDAFFRQTCGDFVGIRMLN-QDLTENIFSFLCSSNNNIARISGMIDKMCKEYGTLICTLDSD 166 (457)
Q Consensus 88 ~YFdLD~DL~~l~~~~~~~Dp~L~~li~~~~GLRILr-qDPfE~LIsfIcSQNnnI~rI~~mi~rL~~~yGe~l~~~~g~ 166 (457)
+||+||.|+..+++.+ .+++..++|+|+++ +||||+||++|||||+|++++.+++++|+++||+++.. +
T Consensus 80 ~~~~ld~d~~~~~~~l-------~~l~~~~~glR~~~~~d~fe~lv~~Il~Qq~s~~~a~~~~~rL~~~~G~~~~~-~-- 149 (282)
T 1mpg_A 80 RLFDLQCNPQIVNGAL-------GRLGAARPGLRLPGCVDAFEQGVRAILGQLVSVAMAAKLTARVAQLYGERLDD-F-- 149 (282)
T ss_dssp HHHTTTCCHHHHHHHH-------GGGGTTCTTCCCCCCSCHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHCCBCSS-C--
T ss_pred HHHcCCCCHHHHHHHH-------HHHHHHcCCCcCCCCCCHHHHHHHHHHhCcccHHHHHHHHHHHHHHhCCCCCC-C--
Confidence 9999999999998765 36788899999987 99999999999999999999999999999999987721 1
Q ss_pred CCCcCcccCCCCCCCCCCcccccccCCcHHHHcCCChHHHHHhcCC-chhHHHHHHHHHHHHHcCCCCcchhhcCCCHHH
Q psy4725 167 GNLVGDCEKGRSHAKSCPAVTKFFAFPSIDALARPAVEAKLRQLGF-GYRAKFIQKSAEYIIQGGGESWLERLGGKSYEE 245 (457)
Q Consensus 167 ~~~~~~~~~~r~~~~~~p~~~~~ysFPTpe~LA~~~~Ee~LR~~g~-gYRAkyI~~~A~~~~e~~G~~~l~~l~~~~~~e 245 (457)
..++.||||++|++++ +++||.||| ++||+||+++|+++.+ |...++.+ +++++
T Consensus 150 --------------------~~~~~fPtp~~la~~~-~~~Lr~~G~~~~ra~~i~~~A~~~~~--~~~~~~~~--~~~~~ 204 (282)
T 1mpg_A 150 --------------------PEYICFPTPQRLAAAD-PQALKALGMPLKRAEALIHLANAALE--GTLPMTIP--GDVEQ 204 (282)
T ss_dssp --------------------TTCBCCCCHHHHHTCC-HHHHHHTTSCHHHHHHHHHHHHHHHH--TCSCSSCC--SCHHH
T ss_pred --------------------CCcccCCCHHHHHcCC-HHHHHHcCCCHHHHHHHHHHHHHHHc--CCCCcccc--CCHHH
Confidence 2478999999999986 567999999 7999999999999998 55555544 68999
Q ss_pred HHHHhhcCCCccccCCCcccccccccccCCCccchhhhhhccccccchHHHHHHHHhhhhcCchhhHhhhhchhhhhhcc
Q psy4725 246 AREELQRLPGIGAKVGDGVFKEHVWTLWADPSYLHYQVYSQHKLNTNSVETMLKEYFRLDENLPELYAEWSNRDAFFRQT 325 (457)
Q Consensus 246 are~L~~LpGVGpK~a~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (457)
+++.|++|||||||
T Consensus 205 ~~~~L~~lpGIG~~------------------------------------------------------------------ 218 (282)
T 1mpg_A 205 AMKTLQTFPGIGRW------------------------------------------------------------------ 218 (282)
T ss_dssp HHHHHTTSTTCCHH------------------------------------------------------------------
T ss_pred HHHHHhcCCCcCHH------------------------------------------------------------------
Confidence 99999999999999
Q ss_pred CChHHHHHHHHHhcCCCCccccchhHHHHHHhhcccCCCCCCCCCHHHHHHHHHHHHhhhcCcHHHHHHHHHhcccc
Q psy4725 326 CGDFVADCICLMSLSHLQAVPVDTHVYQIACNHYHFQKSTSKTLTPAVYNQIRAFFADKFGKYAGWAHSILFCADLK 402 (457)
Q Consensus 326 ~~~~vAdci~l~~l~~~~~~PvD~~v~~~a~~~y~~~~~~~~~lt~~~y~~i~~~~~~~fg~~ag~A~~~lf~~~l~ 402 (457)
|||||++|+++++++||||+|+.|- .. . ..++ .+++++. +.|+||+|||+.|||.....
T Consensus 219 ----TA~~ill~~lg~~d~~pvdd~~~r~---~l--~-----~~~~---~~~~~~~-~~~~P~r~~a~~~lw~~~~~ 277 (282)
T 1mpg_A 219 ----TANYFALRGWQAKDVFLPDDYLIKQ---RF--P-----GMTP---AQIRRYA-ERWKPWRSYALLHIWYTEGW 277 (282)
T ss_dssp ----HHHHHHHHHSCCSSCCCTTCHHHHH---HS--T-----TCCH---HHHHHHH-GGGTTCHHHHHHHHHTCTTC
T ss_pred ----HHHHHHHHhCCCCCcCccccHHHHH---Hh--c-----cCCH---HHHHHHH-HHcCCHHHHHHHHHHHhccC
Confidence 9999999999999999997766442 11 1 1333 6677654 99999999999999987543
No 6
>3s6i_A DNA-3-methyladenine glycosylase 1; DNA glycosylase, DNA repair, helix-hairpin-helix (HHH), ABAS tetrahydrofuran (THF); HET: 3DR; 2.28A {Schizosaccharomyces pombe}
Probab=100.00 E-value=6.2e-38 Score=300.49 Aligned_cols=196 Identities=17% Similarity=0.161 Sum_probs=170.3
Q ss_pred CCHHHHHHHHhccChhHHHhhhhhCCcccc---CC-CHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCcccccCCCCCC
Q psy4725 94 ENLPELYAEWSNRDAFFRQTCGDFVGIRML---NQ-DLTENIFSFLCSSNNNIARISGMIDKMCKEYGTLICTLDSDGNL 169 (457)
Q Consensus 94 ~DL~~l~~~~~~~Dp~L~~li~~~~GLRIL---rq-DPfE~LIsfIcSQNnnI~rI~~mi~rL~~~yGe~l~~~~g~~~~ 169 (457)
.|+..+++.|+..||.|+.+++.++|+|+. +| ||||+||++|||||+|++++.+++++| ++||.
T Consensus 13 ~~~~~~~~~L~~~Dp~l~~li~~~g~~r~~~~~~~~d~fe~Lv~~Il~Qq~s~~~a~~~~~rL-~~~Gg----------- 80 (228)
T 3s6i_A 13 TSLTKAEIHLSGLDENWKRLVKLVGNYRPNRSMEKKEPYEELIRAVASQQLHSKAANAIFNRF-KSISN----------- 80 (228)
T ss_dssp ---CHHHHHHHTSCHHHHHHHHHHCSCCCCCTTTTSCHHHHHHHHHHHSSSCHHHHHHHHHHH-HTSSG-----------
T ss_pred HHHHHHHHHHHhhChHHHHHHHHcCCCCCCCCCCcCCHHHHHHHHHHhCcCCHHHHHHHHHHH-HHhcC-----------
Confidence 467788899988999999999999999983 56 999999999999999999999999999 99851
Q ss_pred cCcccCCCCCCCCCCcccccccCCcHHHHcCCChHHHHHhcCCchh-HHHHHHHHHHHHHcCCCC-cchhhcCCCHHHHH
Q psy4725 170 VGDCEKGRSHAKSCPAVTKFFAFPSIDALARPAVEAKLRQLGFGYR-AKFIQKSAEYIIQGGGES-WLERLGGKSYEEAR 247 (457)
Q Consensus 170 ~~~~~~~r~~~~~~p~~~~~ysFPTpe~LA~~~~Ee~LR~~g~gYR-AkyI~~~A~~~~e~~G~~-~l~~l~~~~~~ear 247 (457)
-+.||||++|+.++ +++||.|||++| |+||+++|+++.+ |.. +++.|..+++++++
T Consensus 81 -------------------~~~fPtp~~la~~~-~e~Lr~~G~~~rKa~~i~~~A~~~~~--g~~p~~~~l~~~~~~e~~ 138 (228)
T 3s6i_A 81 -------------------NGQFPTPEEIRDMD-FEIMRACGFSARKIDSLKSIAEATIS--GLIPTKEEAERLSNEELI 138 (228)
T ss_dssp -------------------GGSCCCHHHHHHSC-HHHHHHHTCCHHHHHHHHHHHHHHHH--TSSCCHHHHTTSCHHHHH
T ss_pred -------------------CCCCCCHHHHHcCC-HHHHHHcCCCHHHHHHHHHHHHHHHc--CCCCChHHHhcCCHHHHH
Confidence 15699999999986 567999999997 9999999999998 776 68999999999999
Q ss_pred HHhhcCCCccccCCCcccccccccccCCCccchhhhhhccccccchHHHHHHHHhhhhcCchhhHhhhhchhhhhhccCC
Q psy4725 248 EELQRLPGIGAKVGDGVFKEHVWTLWADPSYLHYQVYSQHKLNTNSVETMLKEYFRLDENLPELYAEWSNRDAFFRQTCG 327 (457)
Q Consensus 248 e~L~~LpGVGpK~a~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (457)
+.|++|||||||
T Consensus 139 ~~L~~l~GIG~~-------------------------------------------------------------------- 150 (228)
T 3s6i_A 139 ERLTQIKGIGRW-------------------------------------------------------------------- 150 (228)
T ss_dssp HHHTTSTTCCHH--------------------------------------------------------------------
T ss_pred HHHHhCCCcCHH--------------------------------------------------------------------
Confidence 999999999999
Q ss_pred hHHHHHHHHHhcCCCCccccc-hhHHHHHHhhcccCCCCCCCCCHHHHHHHHHHHHhhhcCcHHHHHHHHHhccc
Q psy4725 328 DFVADCICLMSLSHLQAVPVD-THVYQIACNHYHFQKSTSKTLTPAVYNQIRAFFADKFGKYAGWAHSILFCADL 401 (457)
Q Consensus 328 ~~vAdci~l~~l~~~~~~PvD-~~v~~~a~~~y~~~~~~~~~lt~~~y~~i~~~~~~~fg~~ag~A~~~lf~~~l 401 (457)
|||||++|+++++++|||| .|+.+++.+.|... ..++++ +++. +.+.|+||+|||++|||++..
T Consensus 151 --TA~~ill~~lg~pd~fpvdD~~v~r~~~~~~~~~----~~~~~~---~~~~-~~e~w~P~r~~A~~yLw~~~~ 215 (228)
T 3s6i_A 151 --TVEMLLIFSLNRDDVMPADDLSIRNGYRYLHRLP----KIPTKM---YVLK-HSEICAPFRTAAAWYLWKTSK 215 (228)
T ss_dssp --HHHHHHHHTSCCSSCCCTTCHHHHHHHHHHTTCS----SCCCHH---HHHH-HHGGGTTCHHHHHHHHHHGGG
T ss_pred --HHHHHHHHhCCCCCEEecccHHHHHHHHHHhCCC----CCCCHH---HHHH-HHHHhCCHHHHHHHHHHHhCc
Confidence 9999999999999999995 67888888887533 235653 4443 589999999999999998643
No 7
>2yg9_A DNA-3-methyladenine glycosidase II, putative; hydrolase, DNA repair; 1.95A {Deinococcus radiodurans} PDB: 2yg8_A
Probab=100.00 E-value=5e-37 Score=293.50 Aligned_cols=191 Identities=17% Similarity=0.197 Sum_probs=172.2
Q ss_pred HhhcCCCCHHHHHHHHhccChhHHHhhhhhCCc-cc-cCCCHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCcccccCC
Q psy4725 88 EYFRLDENLPELYAEWSNRDAFFRQTCGDFVGI-RM-LNQDLTENIFSFLCSSNNNIARISGMIDKMCKEYGTLICTLDS 165 (457)
Q Consensus 88 ~YFdLD~DL~~l~~~~~~~Dp~L~~li~~~~GL-RI-LrqDPfE~LIsfIcSQNnnI~rI~~mi~rL~~~yGe~l~~~~g 165 (457)
.+..-+.++...++.|...||.|+.+++.++|+ |. .++||||+||++|||||+|++++.+++.+|+++||.
T Consensus 20 ~~~~~~~~~~~~~~~l~~~D~~l~~l~~~~~~~~~~~~~~dpfe~Lv~~IlsQq~s~~~a~~~~~rL~~~~G~------- 92 (225)
T 2yg9_A 20 PAVLPPLTDHAGAVAHLSRDPVLAQVTSLCGELPVLAPTPDPFGRLVRSVAGQQLSVKAAQAIYGRLEGLPGG------- 92 (225)
T ss_dssp CCCCCCCSCSHHHHHHHTTSHHHHHHHHHHCCCCCCCCCSCHHHHHHHHHHHTTSCHHHHHHHHHHHHTSTTC-------
T ss_pred ccCCChhhHHHHHHHHHhcCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHhCcChHHHHHHHHHHHHHHhCc-------
Confidence 345567788999999999999999999999999 54 789999999999999999999999999999998872
Q ss_pred CCCCcCcccCCCCCCCCCCcccccccCCcHHHHcCCChHHHHHhcCCch-hHHHHHHHHHHHHHcCCCCcchhhcCCCHH
Q psy4725 166 DGNLVGDCEKGRSHAKSCPAVTKFFAFPSIDALARPAVEAKLRQLGFGY-RAKFIQKSAEYIIQGGGESWLERLGGKSYE 244 (457)
Q Consensus 166 ~~~~~~~~~~~r~~~~~~p~~~~~ysFPTpe~LA~~~~Ee~LR~~g~gY-RAkyI~~~A~~~~e~~G~~~l~~l~~~~~~ 244 (457)
|||++|++++ +++||.+||++ ||+||+++|+.+.+ |..+++.|..++.+
T Consensus 93 ---------------------------ptp~~la~~~-~e~Lr~~G~~~~KA~~i~~lA~~~~~--g~~~l~~l~~~~~~ 142 (225)
T 2yg9_A 93 ---------------------------VVPAALLKVS-GDDLRGVGLSWAKVRTVQAAAAAAVS--GQIDFAHLSGQPDE 142 (225)
T ss_dssp ---------------------------SCHHHHTTSC-HHHHHHTTCCHHHHHHHHHHHHHHHT--TSSCGGGCTTSCHH
T ss_pred ---------------------------CCHHHHHcCC-HHHHHHCCCcHHHHHHHHHHHHHHHh--CCcCHHHHhcCCHH
Confidence 7999999986 56799999987 79999999999998 88899999999999
Q ss_pred HHHHHhhcCCCccccCCCcccccccccccCCCccchhhhhhccccccchHHHHHHHHhhhhcCchhhHhhhhchhhhhhc
Q psy4725 245 EAREELQRLPGIGAKVGDGVFKEHVWTLWADPSYLHYQVYSQHKLNTNSVETMLKEYFRLDENLPELYAEWSNRDAFFRQ 324 (457)
Q Consensus 245 eare~L~~LpGVGpK~a~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (457)
++++.|++|||||||
T Consensus 143 e~~~~L~~l~GIG~~----------------------------------------------------------------- 157 (225)
T 2yg9_A 143 LVIAELVQLPGIGRW----------------------------------------------------------------- 157 (225)
T ss_dssp HHHHHHHTSTTCCHH-----------------------------------------------------------------
T ss_pred HHHHHHHcCCCCCHH-----------------------------------------------------------------
Confidence 999999999999999
Q ss_pred cCChHHHHHHHHHhcCCCCcccc-chhHHHHHHhhcccCCCCCCCCCHHHHHHHHHHHHhhhcCcHHHHHHHHHhc
Q psy4725 325 TCGDFVADCICLMSLSHLQAVPV-DTHVYQIACNHYHFQKSTSKTLTPAVYNQIRAFFADKFGKYAGWAHSILFCA 399 (457)
Q Consensus 325 ~~~~~vAdci~l~~l~~~~~~Pv-D~~v~~~a~~~y~~~~~~~~~lt~~~y~~i~~~~~~~fg~~ag~A~~~lf~~ 399 (457)
|||||++|+++++++||| |+||+|++.++| + . .++++ +.+.|+||+|||+.|||.+
T Consensus 158 -----TA~~ill~~lg~~d~fpv~D~~v~r~~~~l~-~--~----------~~~~~-~~e~~~P~r~~a~~~Lw~~ 214 (225)
T 2yg9_A 158 -----TAEMFLLFALARPDVFSSGDLALRQGVERLY-P--G----------EDWRD-VTARWAPYRSLASRYLWAN 214 (225)
T ss_dssp -----HHHHHHHHTSCCSCCCCTTCHHHHHHHHHHS-T--T----------SCHHH-HHHHHTTCHHHHHHHHHHH
T ss_pred -----HHHHHHHHhCCCCCeeeCccHHHHHHHHHhC-C--H----------HHHHH-HHHHcCCHHHHHHHHHHHH
Confidence 999999999999999999 999999999988 2 1 23443 4789999999999999954
No 8
>2h56_A DNA-3-methyladenine glycosidase; 10174367, EC 3.2.2.-, struc genomics, PSI-2, protein structure initiative, joint center structural genomics; 2.55A {Bacillus halodurans}
Probab=100.00 E-value=9.4e-36 Score=285.82 Aligned_cols=200 Identities=18% Similarity=0.187 Sum_probs=171.7
Q ss_pred HHhhcCCCCHHHHHHHHhccChhHHHhhhhhCCccc-cCCCHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCcccccCC
Q psy4725 87 KEYFRLDENLPELYAEWSNRDAFFRQTCGDFVGIRM-LNQDLTENIFSFLCSSNNNIARISGMIDKMCKEYGTLICTLDS 165 (457)
Q Consensus 87 r~YFdLD~DL~~l~~~~~~~Dp~L~~li~~~~GLRI-LrqDPfE~LIsfIcSQNnnI~rI~~mi~rL~~~yGe~l~~~~g 165 (457)
.+||+.. ...++.+...||.|+.+++.++|+|. ..+||||+||++|||||++++++.+++.+|+++||.
T Consensus 13 ~~~~~~~---~~~~~~l~~~d~~l~~l~~~~~~~~~~~~~dpfe~Lv~~IlsQqts~~~a~~~~~rL~~~~G~------- 82 (233)
T 2h56_A 13 MRYFSTD---SPEVKTIVAQDSRLFQFIEIAGEVQLPTKPNPFQSLVSSIVEQQLSIKAASAIYGRVEQLVGG------- 82 (233)
T ss_dssp EEEECTT---SHHHHHHHTTCHHHHHHHHHHCCEEEECCSCHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTS-------
T ss_pred HHHhhhH---HHHHHHHHhcCHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC-------
Confidence 3466543 34456677899999999999999987 789999999999999999999999999999999983
Q ss_pred CCCCcCcccCCCCCCCCCCcccccccCCcHHHHcCCChHHHHHhcCCch-hHHHHHHHHHHHHHcCCCCcchhhcCCCHH
Q psy4725 166 DGNLVGDCEKGRSHAKSCPAVTKFFAFPSIDALARPAVEAKLRQLGFGY-RAKFIQKSAEYIIQGGGESWLERLGGKSYE 244 (457)
Q Consensus 166 ~~~~~~~~~~~r~~~~~~p~~~~~ysFPTpe~LA~~~~Ee~LR~~g~gY-RAkyI~~~A~~~~e~~G~~~l~~l~~~~~~ 244 (457)
.||||++|++++ +++||.+||++ ||+||+++|+.+.+ |..+++.+.+++++
T Consensus 83 -------------------------~fPtp~~la~~~-~e~Lr~~G~~~~KA~~I~~~A~~i~~--~~~~~~~l~~~p~~ 134 (233)
T 2h56_A 83 -------------------------ALEKPEQLYRVS-DEALRQAGVSKRKIEYIRHVCEHVES--GRLDFTELEGAEAT 134 (233)
T ss_dssp -------------------------CCCCTHHHHTSC-HHHHHHTTCCHHHHHHHHHHHHHHHT--TSSCHHHHTTSCHH
T ss_pred -------------------------CCCCHHHHHcCC-HHHHHHcCCCHHHHHHHHHHHHHHHh--CCCCHHHHhcCCHH
Confidence 279999999986 56799999998 69999999999998 66678888899999
Q ss_pred HHHHHhhcCCCccccCCCcccccccccccCCCccchhhhhhccccccchHHHHHHHHhhhhcCchhhHhhhhchhhhhhc
Q psy4725 245 EAREELQRLPGIGAKVGDGVFKEHVWTLWADPSYLHYQVYSQHKLNTNSVETMLKEYFRLDENLPELYAEWSNRDAFFRQ 324 (457)
Q Consensus 245 eare~L~~LpGVGpK~a~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (457)
++++.|++|||||||
T Consensus 135 ~~~~~L~~lpGIG~k----------------------------------------------------------------- 149 (233)
T 2h56_A 135 TVIEKLTAIKGIGQW----------------------------------------------------------------- 149 (233)
T ss_dssp HHHHHHHTSTTCCHH-----------------------------------------------------------------
T ss_pred HHHHHHHhCCCcCHH-----------------------------------------------------------------
Confidence 999999999999999
Q ss_pred cCChHHHHHHHHHhcCCCCccccchhHHHHHHhhcccCCCCCCCCCHHHHHHHHHHHHhhhcCcHHHHHHHHHhccc
Q psy4725 325 TCGDFVADCICLMSLSHLQAVPVDTHVYQIACNHYHFQKSTSKTLTPAVYNQIRAFFADKFGKYAGWAHSILFCADL 401 (457)
Q Consensus 325 ~~~~~vAdci~l~~l~~~~~~PvD~~v~~~a~~~y~~~~~~~~~lt~~~y~~i~~~~~~~fg~~ag~A~~~lf~~~l 401 (457)
|||||++|+++++++||||+|+.|++.+++.... +.++ +.+++.+ .+.|+||+|||+.|||..+.
T Consensus 150 -----TA~~ill~alg~pd~~pvdd~~~r~~~~~~~~~~---~~~~---~~~~~~~-~e~~~P~~~~a~~~lw~~~~ 214 (233)
T 2h56_A 150 -----TAEMFMMFSLGRLDVLSVGDVGLQRGAKWLYGNG---EGDG---KKLLIYH-GKAWAPYETVACLYLWKAAG 214 (233)
T ss_dssp -----HHHHHHHHTTCCSCCCCTTCHHHHHHHHHHHSSS---CSCH---HHHHHHH-HGGGTTCHHHHHHHHHHHHT
T ss_pred -----HHHHHHHHhCCCCCeeeCchHHHHHHHHHhccCC---CCCC---HHHHHHH-HHHcCcHHHHHHHHHHhccc
Confidence 9999999999999999999999888888765321 1233 3566654 79999999999999995443
No 9
>3fhg_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase, hydrolase; 1.90A {Sulfolobus solfataricus}
Probab=99.93 E-value=2.7e-25 Score=209.62 Aligned_cols=166 Identities=15% Similarity=0.229 Sum_probs=137.6
Q ss_pred cCCCHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCcccccCCCCCCcCcccCCCCCCCCCCcccccccCCcHHHHcCCC
Q psy4725 123 LNQDLTENIFSFLCSSNNNIARISGMIDKMCKEYGTLICTLDSDGNLVGDCEKGRSHAKSCPAVTKFFAFPSIDALARPA 202 (457)
Q Consensus 123 LrqDPfE~LIsfIcSQNnnI~rI~~mi~rL~~~yGe~l~~~~g~~~~~~~~~~~r~~~~~~p~~~~~ysFPTpe~LA~~~ 202 (457)
..+||||+||++|+|||++++++.+++++| |+.+ .++++++|.
T Consensus 29 ~~~~~fe~Lv~~ILsqqts~~~~~~~~~~L----~~~l------------------------------~~~~~e~l~--- 71 (207)
T 3fhg_A 29 NEEVWFRELTLCLLTANSSFISAYQALNCL----GQKI------------------------------YYANEEEIR--- 71 (207)
T ss_dssp CHHHHHHHHHHHHHHTTSCHHHHHHHHHHH----GGGG------------------------------GTCCHHHHH---
T ss_pred CcCCHHHHHHHHHHcCCCCHHHHHHHHHHH----HHHH------------------------------HcCCHHHHH---
Confidence 567999999999999999999999999998 3222 346788765
Q ss_pred hHHHHHhcCCch---hHHHHHHHHHHHHHcCCCCcchhhcCCCHHHHHHHhhcCCCccccCCCcccccccccccCCCccc
Q psy4725 203 VEAKLRQLGFGY---RAKFIQKSAEYIIQGGGESWLERLGGKSYEEAREELQRLPGIGAKVGDGVFKEHVWTLWADPSYL 279 (457)
Q Consensus 203 ~Ee~LR~~g~gY---RAkyI~~~A~~~~e~~G~~~l~~l~~~~~~eare~L~~LpGVGpK~a~~vl~~~~~~~~~~~~~~ 279 (457)
+.||.+|+|| ||+||+++|+++.+.. ..+++.+.+.+++++++.|++|||||||
T Consensus 72 --~~ir~~G~g~~~~KA~~l~~~a~~~~~~~-~~~l~~~~~~~~~~~~~~L~~lpGIG~k-------------------- 128 (207)
T 3fhg_A 72 --NILKSCKYRFYNLKAKYIIMAREKVYGRL-KEEIKPLADEDQQLARERLLNIKGIGMQ-------------------- 128 (207)
T ss_dssp --HHHHHTTCTTHHHHHHHHHHHHHHHTTTH-HHHHHHHHHHCHHHHHHHHTTSTTCCHH--------------------
T ss_pred --HHHHHhccCcHHHHHHHHHHHHHHHHHHh-hhhHHHHhCCCHHHHHHHHHcCCCcCHH--------------------
Confidence 4699999885 7999999999886521 1247778888999999999999999999
Q ss_pred hhhhhhccccccchHHHHHHHHhhhhcCchhhHhhhhchhhhhhccCChHHHHHHHHHhcCCCCccccchhHHHHHHhhc
Q psy4725 280 HYQVYSQHKLNTNSVETMLKEYFRLDENLPELYAEWSNRDAFFRQTCGDFVADCICLMSLSHLQAVPVDTHVYQIACNHY 359 (457)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vAdci~l~~l~~~~~~PvD~~v~~~a~~~y 359 (457)
|||||++|. ++.+++|||+||.|++.+++
T Consensus 129 --------------------------------------------------TA~~il~~~-~~~~~~~vD~~v~Ri~~rlg 157 (207)
T 3fhg_A 129 --------------------------------------------------EASHFLRNV-GYFDLAIIDRHIIDFMRRIG 157 (207)
T ss_dssp --------------------------------------------------HHHHHHHHT-TCCSSCCCCHHHHHHHHHTT
T ss_pred --------------------------------------------------HHHHHHHHh-CCCCcceecHHHHHHHHHcC
Confidence 999999982 33689999999999999998
Q ss_pred ccCCCCCCCCCHHHHHHHHHHH---HhhhcCcHHHHHHHHHhc
Q psy4725 360 HFQKSTSKTLTPAVYNQIRAFF---ADKFGKYAGWAHSILFCA 399 (457)
Q Consensus 360 ~~~~~~~~~lt~~~y~~i~~~~---~~~fg~~ag~A~~~lf~~ 399 (457)
.......+.+|++.|.++...+ .+.+|..+|+...|||+.
T Consensus 158 ~~~~~~~k~~~~k~y~~~~~~l~~~~~~~~~~~~~lDl~lw~~ 200 (207)
T 3fhg_A 158 AIGETNVKQLSKSLYISFENILKSIASNLNMSVGILDLFIWYK 200 (207)
T ss_dssp SSCCCCCSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred CCCccccccCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 7543234678999988877654 478999999999999986
No 10
>1orn_A Endonuclease III; DNA repair, DNA glycosylase, [4Fe-4S] cluster, iron-sulfur cluster, hydrolase/DNA complex; HET: PED; 1.70A {Geobacillus stearothermophilus} SCOP: a.96.1.1 PDB: 1orp_A* 1p59_A*
Probab=99.92 E-value=1.1e-24 Score=208.17 Aligned_cols=170 Identities=18% Similarity=0.272 Sum_probs=129.8
Q ss_pred hHHHhhhhhCCc--cccCCCHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCcccccCCCCCCcCcccCCCCCCCCCCcc
Q psy4725 109 FFRQTCGDFVGI--RMLNQDLTENIFSFLCSSNNNIARISGMIDKMCKEYGTLICTLDSDGNLVGDCEKGRSHAKSCPAV 186 (457)
Q Consensus 109 ~L~~li~~~~GL--RILrqDPfE~LIsfIcSQNnnI~rI~~mi~rL~~~yGe~l~~~~g~~~~~~~~~~~r~~~~~~p~~ 186 (457)
.+..+.+.+++. ++..+||||+||++|+|||++++++..+..+|.+
T Consensus 13 i~~~L~~~y~~~~~~l~~~~pfe~Lv~~IlsQqts~~~v~~~~~~l~~-------------------------------- 60 (226)
T 1orn_A 13 CLDEMAKMFPDAHCELVHRNPFELLIAVVLSAQCTDALVNKVTKRLFE-------------------------------- 60 (226)
T ss_dssp HHHHHHHHCTTCCCCSCCSSHHHHHHHHHHHTTSCHHHHHHHHHHHHH--------------------------------
T ss_pred HHHHHHHHcCccCCCCCCCCHHHHHHHHHHhCCCcHHHHHHHHHHHHH--------------------------------
Confidence 344555666654 4578999999999999999999999999998754
Q ss_pred cccccCCcHHHHcCCChHHH---HHhcCCc-hhHHHHHHHHHHHHHcCCCCcchhhcCCCHHHHHHHhhcCCCccccCCC
Q psy4725 187 TKFFAFPSIDALARPAVEAK---LRQLGFG-YRAKFIQKSAEYIIQGGGESWLERLGGKSYEEAREELQRLPGIGAKVGD 262 (457)
Q Consensus 187 ~~~ysFPTpe~LA~~~~Ee~---LR~~g~g-YRAkyI~~~A~~~~e~~G~~~l~~l~~~~~~eare~L~~LpGVGpK~a~ 262 (457)
.||||++|++++.++. |+.+||+ .||+||+++|+.+.++.|. +.+++++.|++|||||||
T Consensus 61 ----~fpt~~~la~a~~~~l~~~i~~~G~~~~KA~~l~~~a~~i~~~~~g---------~~p~~~~~L~~lpGIG~~--- 124 (226)
T 1orn_A 61 ----KYRTPHDYIAVPLEELEQDIRSIGLYRNKARNIQKLCAMLIDKYNG---------EVPRDRDELMKLPGVGRK--- 124 (226)
T ss_dssp ----HCCSHHHHHSSCHHHHHHHTGGGSSHHHHHHHHHHHHHHHHHHSTT---------SCCSCHHHHTTSTTCCHH---
T ss_pred ----HCCCHHHHHcCCHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCC---------CcHHHHHHHHHCCCccHH---
Confidence 3689999999864322 6778886 5899999999999984221 234578999999999999
Q ss_pred cccccccccccCCCccchhhhhhccccccchHHHHHHHHhhhhcCchhhHhhhhchhhhhhccCChHHHHHHHHHhcCCC
Q psy4725 263 GVFKEHVWTLWADPSYLHYQVYSQHKLNTNSVETMLKEYFRLDENLPELYAEWSNRDAFFRQTCGDFVADCICLMSLSHL 342 (457)
Q Consensus 263 ~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vAdci~l~~l~~~ 342 (457)
|||||++|+++++
T Consensus 125 -------------------------------------------------------------------TA~~il~~a~g~~ 137 (226)
T 1orn_A 125 -------------------------------------------------------------------TANVVVSVAFGVP 137 (226)
T ss_dssp -------------------------------------------------------------------HHHHHHHHHHCCC
T ss_pred -------------------------------------------------------------------HHHHHHHHHCCCc
Confidence 9999999999996
Q ss_pred CccccchhHHHHHHhhcccCCCCCCCCCHHHHHHHHHHHHhhhcC--cHHHHHHHHHhccc
Q psy4725 343 QAVPVDTHVYQIACNHYHFQKSTSKTLTPAVYNQIRAFFADKFGK--YAGWAHSILFCADL 401 (457)
Q Consensus 343 ~~~PvD~~v~~~a~~~y~~~~~~~~~lt~~~y~~i~~~~~~~fg~--~ag~A~~~lf~~~l 401 (457)
+||||+||.|++.+++.... ++.|.+++.++.+.++. |+.|.+.++.+.+.
T Consensus 138 -~~~vD~~v~Rv~~rlg~~~~-------~~~~~~~~~~l~~~~p~~~~~~~~~~lv~~G~~ 190 (226)
T 1orn_A 138 -AIAVDTHVERVSKRLGFCRW-------DDSVLEVEKTLMKIIPKEEWSITHHRMIFFGRY 190 (226)
T ss_dssp -CCCCCHHHHHHHHHHTSSCT-------TCCHHHHHHHHHHHSCGGGHHHHHHHHHHHHHH
T ss_pred -eeeeCHHHHHHHHHhCCCCC-------CCCHHHHHHHHHHhcChhhHHHHHHHHHHHHHH
Confidence 99999999999999876321 12346777777666542 44455555555443
No 11
>2abk_A Endonuclease III; DNA-repair, DNA glycosylase; 1.85A {Escherichia coli} SCOP: a.96.1.1
Probab=99.92 E-value=6.2e-25 Score=207.16 Aligned_cols=166 Identities=15% Similarity=0.186 Sum_probs=128.1
Q ss_pred hHHHhhhhhCCc--cccCCCHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCcccccCCCCCCcCcccCCCCCCCCCCcc
Q psy4725 109 FFRQTCGDFVGI--RMLNQDLTENIFSFLCSSNNNIARISGMIDKMCKEYGTLICTLDSDGNLVGDCEKGRSHAKSCPAV 186 (457)
Q Consensus 109 ~L~~li~~~~GL--RILrqDPfE~LIsfIcSQNnnI~rI~~mi~rL~~~yGe~l~~~~g~~~~~~~~~~~r~~~~~~p~~ 186 (457)
.++.+++.+++. .+..+||||+||++|+|||++++++.+++.+|.
T Consensus 9 i~~~L~~~~~~~~~~~~~~~pfe~lv~~Il~qqts~~~v~~~~~~l~--------------------------------- 55 (211)
T 2abk_A 9 ILTRLRENNPHPTTELNFSSPFELLIAVLLSAQATDVSVNKATAKLY--------------------------------- 55 (211)
T ss_dssp HHHHHHHHCSSCCCSSCCSSHHHHHHHHHHTTTSCHHHHHHHHHHHT---------------------------------
T ss_pred HHHHHHHHcCCCCcCCCCCCHHHHHHHHHHhCCCCHHHHHHHHHHHH---------------------------------
Confidence 455566666654 346899999999999999999999999998762
Q ss_pred cccccCCcHHHHcCCChHHH----HHhcCCc-hhHHHHHHHHHHHHHcCCCCcchhhcCCCHHHHHHHhhcCCCccccCC
Q psy4725 187 TKFFAFPSIDALARPAVEAK----LRQLGFG-YRAKFIQKSAEYIIQGGGESWLERLGGKSYEEAREELQRLPGIGAKVG 261 (457)
Q Consensus 187 ~~~ysFPTpe~LA~~~~Ee~----LR~~g~g-YRAkyI~~~A~~~~e~~G~~~l~~l~~~~~~eare~L~~LpGVGpK~a 261 (457)
..||||++|++++ +++ |+.+||. .||+||+++|+.+.++.|. +.+++++.|++|||||||
T Consensus 56 ---~~fpt~~~la~a~-~~~l~~~i~~~G~~~~KA~~l~~~a~~~~~~~~g---------~~~~~~~~L~~l~GIG~~-- 120 (211)
T 2abk_A 56 ---PVANTPAAMLELG-VEGVKTYIKTIGLYNSKAENIIKTCRILLEQHNG---------EVPEDRAALEALPGVGRK-- 120 (211)
T ss_dssp ---TTCCSHHHHHHHH-HHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHTTT---------SCCSCHHHHHHSTTCCHH--
T ss_pred ---HHCCCHHHHHCCC-HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCC---------CchHHHHHHHhCCCCChH--
Confidence 2479999999875 445 4556764 3899999999999984221 234688999999999999
Q ss_pred CcccccccccccCCCccchhhhhhccccccchHHHHHHHHhhhhcCchhhHhhhhchhhhhhccCChHHHHHHHHHhcCC
Q psy4725 262 DGVFKEHVWTLWADPSYLHYQVYSQHKLNTNSVETMLKEYFRLDENLPELYAEWSNRDAFFRQTCGDFVADCICLMSLSH 341 (457)
Q Consensus 262 ~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vAdci~l~~l~~ 341 (457)
|||||++|++++
T Consensus 121 --------------------------------------------------------------------tA~~il~~~~~~ 132 (211)
T 2abk_A 121 --------------------------------------------------------------------TANVVLNTAFGW 132 (211)
T ss_dssp --------------------------------------------------------------------HHHHHHHHHHCC
T ss_pred --------------------------------------------------------------------HHHHHHHHHCCC
Confidence 999999999999
Q ss_pred CCccccchhHHHHHHhhcccCCCCCCCCCHHHHHHHHHHHHhhhcC-cHHHHHHHHHhc
Q psy4725 342 LQAVPVDTHVYQIACNHYHFQKSTSKTLTPAVYNQIRAFFADKFGK-YAGWAHSILFCA 399 (457)
Q Consensus 342 ~~~~PvD~~v~~~a~~~y~~~~~~~~~lt~~~y~~i~~~~~~~fg~-~ag~A~~~lf~~ 399 (457)
+ +||||+||.|++.+++... . +.|.+++.++.+.+++ +.+..|++|+..
T Consensus 133 ~-~~~vD~~v~Rv~~rlgl~~-----~---~~~~~~~~~~~~~~p~~~~~~~~~~l~~~ 182 (211)
T 2abk_A 133 P-TIAVDTHIFRVCNRTQFAP-----G---KNVEQVEEKLLKVVPAEFKVDCHHWLILH 182 (211)
T ss_dssp C-CCCCCHHHHHHHHHHCSSC-----C---SSHHHHHHHHHHHSCGGGTTTHHHHHHHH
T ss_pred C-cCCcCHHHHHHHHHhCCCC-----C---CCHHHHHHHHHHhcChhhHHHHHHHHHHH
Confidence 8 9999999999999887532 1 1357777777666652 445555555543
No 12
>1pu6_A 3-methyladenine DNA glycosylase; helix-hairpin-helix, base excision repair, hydrolase; HET: KCX; 1.64A {Helicobacter pylori} SCOP: a.96.1.5 PDB: 1pu7_A* 1pu8_A*
Probab=99.91 E-value=9.3e-25 Score=207.66 Aligned_cols=144 Identities=20% Similarity=0.171 Sum_probs=118.6
Q ss_pred CCCHHHHHHHHHHhccccHHHHHHHHHHHHHH-hCCcccccCCCCCCcCcccCCCCCCCCCCcccccccCCcHHHHcCCC
Q psy4725 124 NQDLTENIFSFLCSSNNNIARISGMIDKMCKE-YGTLICTLDSDGNLVGDCEKGRSHAKSCPAVTKFFAFPSIDALARPA 202 (457)
Q Consensus 124 rqDPfE~LIsfIcSQNnnI~rI~~mi~rL~~~-yGe~l~~~~g~~~~~~~~~~~r~~~~~~p~~~~~ysFPTpe~LA~~~ 202 (457)
++||||+||++|||||++++++.+++.+|+++ |+++ .+||||++|++++
T Consensus 27 ~~dpfe~Lv~~ILsQqts~~~v~~~~~~L~~~~~pt~------------------------------~~~~t~~~la~~~ 76 (218)
T 1pu6_A 27 NALKFEALLGAVLTQNTKFEAVLKSLENLKNAFILEN------------------------------DDEINLKKIAYIE 76 (218)
T ss_dssp TTTSHHHHHHHHHTTTSCHHHHHHHHHHHHHTTSSCS------------------------------CHHHHHHHHHHSC
T ss_pred CCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCCCc------------------------------cccccHHHHHhCC
Confidence 48999999999999999999999999999987 5431 1367799999976
Q ss_pred hHHHH----HhcCCch-hHHHHHHHHHHHHHcCCCCcchhhcCCCHHHHHHHhhcCCCccccCCCcccccccccccCCCc
Q psy4725 203 VEAKL----RQLGFGY-RAKFIQKSAEYIIQGGGESWLERLGGKSYEEAREELQRLPGIGAKVGDGVFKEHVWTLWADPS 277 (457)
Q Consensus 203 ~Ee~L----R~~g~gY-RAkyI~~~A~~~~e~~G~~~l~~l~~~~~~eare~L~~LpGVGpK~a~~vl~~~~~~~~~~~~ 277 (457)
. ++| |.+||+. ||+||+++|+++.++.+ .++ .++.+++++.|++|||||||
T Consensus 77 ~-e~L~~~ir~~G~~~~KA~~L~~~a~~i~~~~~--~l~---~~~~~~~~~~L~~lpGIG~k------------------ 132 (218)
T 1pu6_A 77 F-SKLAECVRPSGFYNQKAKRLIDLSGNILKDFQ--SFE---NFKQEVTREWLLDQKGIGKE------------------ 132 (218)
T ss_dssp H-HHHHHHTGGGSCHHHHHHHHHHHHHHHHHHHS--SHH---HHHHHCCHHHHHTSTTCCHH------------------
T ss_pred H-HHHHHHHHHCCCcHHHHHHHHHHHHHHHHhcC--Chh---hccchHHHHHHHcCCCcCHH------------------
Confidence 4 455 7788876 89999999999988422 233 23567899999999999999
Q ss_pred cchhhhhhccccccchHHHHHHHHhhhhcCchhhHhhhhchhhhhhccCChHHHHHHHHHhcCCCCccccchhHHHHHHh
Q psy4725 278 YLHYQVYSQHKLNTNSVETMLKEYFRLDENLPELYAEWSNRDAFFRQTCGDFVADCICLMSLSHLQAVPVDTHVYQIACN 357 (457)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vAdci~l~~l~~~~~~PvD~~v~~~a~~ 357 (457)
|||||++|+++++ +||||+||.|++.+
T Consensus 133 ----------------------------------------------------TA~~il~~a~~~~-~~~vD~~v~Ri~~r 159 (218)
T 1pu6_A 133 ----------------------------------------------------SADAILCYACAKE-VMVVDKYSYLFLKK 159 (218)
T ss_dssp ----------------------------------------------------HHHHHHHHTTCCS-CCCCCHHHHHHHHH
T ss_pred ----------------------------------------------------HHHHHHHHHCCCC-ccccCHHHHHHHHH
Confidence 9999999999996 99999999999998
Q ss_pred hcccCCCCCCCCCHHHHHHHHHHHHh
Q psy4725 358 HYHFQKSTSKTLTPAVYNQIRAFFAD 383 (457)
Q Consensus 358 ~y~~~~~~~~~lt~~~y~~i~~~~~~ 383 (457)
++.. +..|.+++.++.+
T Consensus 160 lg~~---------~~~~~~~~~~l~~ 176 (218)
T 1pu6_A 160 LGIE---------IEDYDELQHFFEK 176 (218)
T ss_dssp TTCC---------CCSHHHHHHHHHH
T ss_pred cCCC---------CCCHHHHHHHHHH
Confidence 6542 1235778877776
No 13
>1kg2_A A/G-specific adenine glycosylase; DNA repair, hydrolase; 1.20A {Escherichia coli} SCOP: a.96.1.2 PDB: 1kg3_A 1muy_A 1kg6_A 1kg5_A 1mun_A 1mud_A 1kg4_A 1weg_A 1wei_A* 1wef_A* 1kg7_A 1kqj_A
Probab=99.91 E-value=1.1e-23 Score=200.70 Aligned_cols=161 Identities=18% Similarity=0.258 Sum_probs=128.5
Q ss_pred cCCCHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCcccccCCCCCCcCcccCCCCCCCCCCcccccccCCcHHHHcCCC
Q psy4725 123 LNQDLTENIFSFLCSSNNNIARISGMIDKMCKEYGTLICTLDSDGNLVGDCEKGRSHAKSCPAVTKFFAFPSIDALARPA 202 (457)
Q Consensus 123 LrqDPfE~LIsfIcSQNnnI~rI~~mi~rL~~~yGe~l~~~~g~~~~~~~~~~~r~~~~~~p~~~~~ysFPTpe~LA~~~ 202 (457)
..+||||+||++|+|||++++++..++.+|.+ .||||++|++++
T Consensus 26 ~~~~pfe~lv~~IlsQqt~~~~v~~~~~~l~~------------------------------------~~pt~~~la~~~ 69 (225)
T 1kg2_A 26 IDKTPYKVWLSEVMLQQTQVATVIPYFERFMA------------------------------------RFPTVTDLANAP 69 (225)
T ss_dssp SSCCHHHHHHHHHHHTSSCHHHHHHHHHHHHH------------------------------------HCSSHHHHHHSC
T ss_pred CCCCHHHHHHHHHHHCcCCHHHHHHHHHHHHH------------------------------------HCCCHHHHHCCC
Confidence 35899999999999999999999999988754 368999999986
Q ss_pred hHHHHHh----cCCchhHHHHHHHHHHHHHcCCCCcchhhcCCCHHHHHHHhhcCCCccccCCCcccccccccccCCCcc
Q psy4725 203 VEAKLRQ----LGFGYRAKFIQKSAEYIIQGGGESWLERLGGKSYEEAREELQRLPGIGAKVGDGVFKEHVWTLWADPSY 278 (457)
Q Consensus 203 ~Ee~LR~----~g~gYRAkyI~~~A~~~~e~~G~~~l~~l~~~~~~eare~L~~LpGVGpK~a~~vl~~~~~~~~~~~~~ 278 (457)
+++|++ +||..||+||+++|+.+.++.|. +.+++++.|++|||||||
T Consensus 70 -~~~l~~~i~~~G~~~kA~~l~~~a~~i~~~~~g---------~~p~~~~~L~~lpGIG~~------------------- 120 (225)
T 1kg2_A 70 -LDEVLHLWTGLGYYARARNLHKAAQQVATLHGG---------KFPETFEEVAALPGVGRS------------------- 120 (225)
T ss_dssp -HHHHHHHHTTSCCTHHHHHHHHHHHHHHHHSTT---------SCCCSHHHHHTSTTCCHH-------------------
T ss_pred -HHHHHHHHHhCChHHHHHHHHHHHHHHHHHhCC---------CchHHHHHHhcCCCCcHH-------------------
Confidence 456654 45544999999999999984221 123578999999999999
Q ss_pred chhhhhhccccccchHHHHHHHHhhhhcCchhhHhhhhchhhhhhccCChHHHHHHHHHhcCCCCccccchhHHHHHHhh
Q psy4725 279 LHYQVYSQHKLNTNSVETMLKEYFRLDENLPELYAEWSNRDAFFRQTCGDFVADCICLMSLSHLQAVPVDTHVYQIACNH 358 (457)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vAdci~l~~l~~~~~~PvD~~v~~~a~~~ 358 (457)
|||||++|+++++ .+|||+||.|++.|+
T Consensus 121 ---------------------------------------------------TA~~il~~a~~~~-~~~vD~~v~Rv~~rl 148 (225)
T 1kg2_A 121 ---------------------------------------------------TAGAILSLSLGKH-FPILDGNVKRVLARC 148 (225)
T ss_dssp ---------------------------------------------------HHHHHHHHHHCCS-CCCCCHHHHHHHHHH
T ss_pred ---------------------------------------------------HHHHHHHHhCCCC-cceeCHHHHHHHHHH
Confidence 9999999999998 568999999999999
Q ss_pred cccCCCCCCCCCHHHHHHHHHHHHhhhc--CcHHHHHHHHHhccccc
Q psy4725 359 YHFQKSTSKTLTPAVYNQIRAFFADKFG--KYAGWAHSILFCADLKK 403 (457)
Q Consensus 359 y~~~~~~~~~lt~~~y~~i~~~~~~~fg--~~ag~A~~~lf~~~l~~ 403 (457)
|..... ..++..+.++++++.+.+. .|++|.|.++++.+.-.
T Consensus 149 ~~~~~~---~~~~~~~~~l~~~~~~~~p~~~~~~~~~~lv~~G~~~C 192 (225)
T 1kg2_A 149 YAVSGW---PGKKEVENKLWSLSEQVTPAVGVERFNQAMMDLGAMIC 192 (225)
T ss_dssp HTCCSC---TTSHHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTS
T ss_pred cCCCCC---CCccchHHHHHHHHHHHCCcccHHHHHHHHHHHHHHHc
Confidence 854321 1235567888877666665 48999999999876544
No 14
>3n0u_A Probable N-glycosylase/DNA lyase; structural genomics, ISFI, DNA repair, 8-oxoguanine, base EX repair, PSI-2, protein structure initiative; 1.50A {Thermotoga maritima}
Probab=99.89 E-value=2.3e-23 Score=199.11 Aligned_cols=175 Identities=22% Similarity=0.264 Sum_probs=141.2
Q ss_pred hhHHHhhhhhCCccc--cCCCHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCcccccCCCCCCcCcccCCCCCCCCCCc
Q psy4725 108 AFFRQTCGDFVGIRM--LNQDLTENIFSFLCSSNNNIARISGMIDKMCKEYGTLICTLDSDGNLVGDCEKGRSHAKSCPA 185 (457)
Q Consensus 108 p~L~~li~~~~GLRI--LrqDPfE~LIsfIcSQNnnI~rI~~mi~rL~~~yGe~l~~~~g~~~~~~~~~~~r~~~~~~p~ 185 (457)
+.+...++.+.+++. ...||||.||+.|+|||+++.++.++.++| .+.
T Consensus 29 ~~i~~r~~ef~~~~~~~~~~~~fe~Lv~~ILsqqts~~~~~~a~~~L----p~~-------------------------- 78 (219)
T 3n0u_A 29 PLVEQRFEEFKRLGEEGTEEDLFCELSFCVLTANWSAEGGIRAQKEI----GKG-------------------------- 78 (219)
T ss_dssp HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTTSCHHHHHHHHHHH----TTH--------------------------
T ss_pred HHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhCCCCHHHHHHHHHHH----HHH--------------------------
Confidence 334444555555543 346899999999999999999999999888 111
Q ss_pred ccccccCCcHHHHcCCChHHHHHhcC--Cc-hhHHHHHHHHHHHHHcCCCCcchhhcCCCHHHHHHHhh-cCCCccccCC
Q psy4725 186 VTKFFAFPSIDALARPAVEAKLRQLG--FG-YRAKFIQKSAEYIIQGGGESWLERLGGKSYEEAREELQ-RLPGIGAKVG 261 (457)
Q Consensus 186 ~~~~ysFPTpe~LA~~~~Ee~LR~~g--~g-YRAkyI~~~A~~~~e~~G~~~l~~l~~~~~~eare~L~-~LpGVGpK~a 261 (457)
....++++|. +.||.+| |. .||+||.++|+.+ | .|..+.+.+.+++++.|+ ++||||||
T Consensus 79 ----l~~~~~eeL~-----~~Ir~~G~Rf~~~KA~~I~~~a~~i----g--~l~~~~~~~~~~~r~~L~~~l~GVG~k-- 141 (219)
T 3n0u_A 79 ----FVHLPLEELA-----EKLREVGHRYPQKRAEFIVENRKLL----G--KLKNLVKGDPFQSREFLVRNAKGIGWK-- 141 (219)
T ss_dssp ----HHHCCHHHHH-----HHHHHTTCSSHHHHHHHHHHHGGGT----T--THHHHHHSCHHHHHHHHHHHSTTCCHH--
T ss_pred ----HHcCCHHHHH-----HHHHHhcchHHHHHHHHHHHHHHHH----H--HHHHHhcCCcHHHHHHHHHhCCCCCHH--
Confidence 1234566653 4699999 64 3799999999987 2 245555788999999999 99999999
Q ss_pred CcccccccccccCCCccchhhhhhccccccchHHHHHHHHhhhhcCchhhHhhhhchhhhhhccCChHHHHHHHHHhcCC
Q psy4725 262 DGVFKEHVWTLWADPSYLHYQVYSQHKLNTNSVETMLKEYFRLDENLPELYAEWSNRDAFFRQTCGDFVADCICLMSLSH 341 (457)
Q Consensus 262 ~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vAdci~l~~l~~ 341 (457)
|||||+++ +++
T Consensus 142 --------------------------------------------------------------------TA~~vL~~-~g~ 152 (219)
T 3n0u_A 142 --------------------------------------------------------------------EASHFLRN-TGV 152 (219)
T ss_dssp --------------------------------------------------------------------HHHHHHHT-TTC
T ss_pred --------------------------------------------------------------------HHHHHHHH-cCC
Confidence 99999999 888
Q ss_pred CCccccchhHHHHHHhhcccCCCCCCCCCHHHHHHHHHHHH---hhhcCcHHHHHHHHHhc
Q psy4725 342 LQAVPVDTHVYQIACNHYHFQKSTSKTLTPAVYNQIRAFFA---DKFGKYAGWAHSILFCA 399 (457)
Q Consensus 342 ~~~~PvD~~v~~~a~~~y~~~~~~~~~lt~~~y~~i~~~~~---~~fg~~ag~A~~~lf~~ 399 (457)
.++|||||||.|++.|++.... ..+++|++.|.++++.|. +.+|.++|....|||+.
T Consensus 153 ~~~~~VDthv~Ri~~rlg~~~~-~~k~~t~k~y~~ie~~~~~~a~~~g~~~~~ldl~lW~~ 212 (219)
T 3n0u_A 153 EDLAILDKHVLRLMKRHGLIQE-IPKGWSKKRYLYVEEILRKVAEAFGESPGKFDLYLWYL 212 (219)
T ss_dssp CSCCCCCHHHHHHHHHTTSCSS-CCSSCCHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCeeeecHHHHHHHHHcCCCCc-CcCcCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 8899999999999999987554 246889999999998775 89999999999999987
No 15
>1kea_A Possible G-T mismatches repair enzyme; DNA repair, DNA glycosylase, DNA mismatch, methylation; 2.00A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.96.1.2
Probab=99.87 E-value=4.1e-22 Score=189.50 Aligned_cols=121 Identities=15% Similarity=0.331 Sum_probs=104.9
Q ss_pred cCCCHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCcccccCCCCCCcCcccCCCCCCCCCCcccccccCCcHHHHcCCC
Q psy4725 123 LNQDLTENIFSFLCSSNNNIARISGMIDKMCKEYGTLICTLDSDGNLVGDCEKGRSHAKSCPAVTKFFAFPSIDALARPA 202 (457)
Q Consensus 123 LrqDPfE~LIsfIcSQNnnI~rI~~mi~rL~~~yGe~l~~~~g~~~~~~~~~~~r~~~~~~p~~~~~ysFPTpe~LA~~~ 202 (457)
..+||||.||++|+|||++++++.+++.+|.+. ||||++|++++
T Consensus 31 ~~~~pfe~lv~~IlsQqts~~~~~~~~~~l~~~------------------------------------fptp~~la~a~ 74 (221)
T 1kea_A 31 HTRDPYVILITEILLRRTTAGHVKKIYDKFFVK------------------------------------YKCFEDILKTP 74 (221)
T ss_dssp GCCCHHHHHHHHHHTTTSCHHHHHHHHHHHHHH------------------------------------CCSHHHHHHSC
T ss_pred CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHHH------------------------------------CCCHHHHHCCC
Confidence 357999999999999999999999999998653 68999999986
Q ss_pred hHHHH----HhcCCc-hhHHHHHHHHHHHHHc-CCCCcchhhcCCCHHHHHHHhhcCCCccccCCCcccccccccccCCC
Q psy4725 203 VEAKL----RQLGFG-YRAKFIQKSAEYIIQG-GGESWLERLGGKSYEEAREELQRLPGIGAKVGDGVFKEHVWTLWADP 276 (457)
Q Consensus 203 ~Ee~L----R~~g~g-YRAkyI~~~A~~~~e~-~G~~~l~~l~~~~~~eare~L~~LpGVGpK~a~~vl~~~~~~~~~~~ 276 (457)
+++| +.+||+ .||+||+++|+.+.++ +| +.+++++.|++|||||||
T Consensus 75 -~e~l~~~i~~~G~~~~KA~~l~~~a~~i~~~~~g----------~~p~~~~~L~~lpGIG~~----------------- 126 (221)
T 1kea_A 75 -KSEIAKDIKEIGLSNQRAEQLKELARVVINDYGG----------RVPRNRKAILDLPGVGKY----------------- 126 (221)
T ss_dssp -HHHHHHHTGGGSCHHHHHHHHHHHHHHHHHHHTT----------SCCSCHHHHHTSTTCCHH-----------------
T ss_pred -HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHhCC----------CchHHHHHHHhCCCCcHH-----------------
Confidence 4456 778886 5899999999999884 22 234678999999999999
Q ss_pred ccchhhhhhccccccchHHHHHHHHhhhhcCchhhHhhhhchhhhhhccCChHHHHHHHHHhcCCCCccccchhHHHHHH
Q psy4725 277 SYLHYQVYSQHKLNTNSVETMLKEYFRLDENLPELYAEWSNRDAFFRQTCGDFVADCICLMSLSHLQAVPVDTHVYQIAC 356 (457)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vAdci~l~~l~~~~~~PvD~~v~~~a~ 356 (457)
|||||++|+++++ +||||+||.|++.
T Consensus 127 -----------------------------------------------------TA~~il~~~~~~~-~~~vD~~v~Rv~~ 152 (221)
T 1kea_A 127 -----------------------------------------------------TCAAVMCLAFGKK-AAMVDANFVRVIN 152 (221)
T ss_dssp -----------------------------------------------------HHHHHHHHTTCCC-CCCCCHHHHHHHH
T ss_pred -----------------------------------------------------HHHHHHHHhcCCC-cceecHHHHHHHH
Confidence 9999999999996 8999999999999
Q ss_pred hhccc
Q psy4725 357 NHYHF 361 (457)
Q Consensus 357 ~~y~~ 361 (457)
++|..
T Consensus 153 rl~gl 157 (221)
T 1kea_A 153 RYFGG 157 (221)
T ss_dssp HHHCG
T ss_pred HHhCC
Confidence 98653
No 16
>3fhf_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase; 2.00A {Methanocaldococcus jannaschii} PDB: 3knt_A*
Probab=99.87 E-value=7.3e-22 Score=188.27 Aligned_cols=176 Identities=16% Similarity=0.194 Sum_probs=138.7
Q ss_pred cChhHHHh----hhhhCCccc-cCCCHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCcccccCCCCCCcCcccCCCCCC
Q psy4725 106 RDAFFRQT----CGDFVGIRM-LNQDLTENIFSFLCSSNNNIARISGMIDKMCKEYGTLICTLDSDGNLVGDCEKGRSHA 180 (457)
Q Consensus 106 ~Dp~L~~l----i~~~~GLRI-LrqDPfE~LIsfIcSQNnnI~rI~~mi~rL~~~yGe~l~~~~g~~~~~~~~~~~r~~~ 180 (457)
+|+.++.. ++.+.+++. ..+||||.||++|+|||++++++.+.+.+|. +.+
T Consensus 18 ~~~~~~~~i~~r~~ef~~~~~~~~~~~fe~Lv~~ILsqqt~~~~v~~a~~~L~----~~l-------------------- 73 (214)
T 3fhf_A 18 KNSEIKDIIDKRIQEFKSFKNKSNEEWFKELCFCILTANFTAEGGIRIQKEIG----DGF-------------------- 73 (214)
T ss_dssp HTSTHHHHHHHHHHHHHGGGGSCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHT----THH--------------------
T ss_pred ccHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHcCCCCHHHHHHHHHHHH----HHH--------------------
Confidence 45555544 345666663 3578999999999999999999999999984 212
Q ss_pred CCCCcccccccCCcHHHHcCCChHHHHHhcC--Cc-hhHHHHHHHHHHHHHcCCCCcchhhcCC-CHHHHHHHhh-cCCC
Q psy4725 181 KSCPAVTKFFAFPSIDALARPAVEAKLRQLG--FG-YRAKFIQKSAEYIIQGGGESWLERLGGK-SYEEAREELQ-RLPG 255 (457)
Q Consensus 181 ~~~p~~~~~ysFPTpe~LA~~~~Ee~LR~~g--~g-YRAkyI~~~A~~~~e~~G~~~l~~l~~~-~~~eare~L~-~LpG 255 (457)
..+++++|. +.||.+| |. .||+||+++|+ + | ..++.+.++ +.+++++.|+ +|||
T Consensus 74 ----------~~~~~eeL~-----~~Ir~~G~rf~~~KA~~I~~~a~-~----~-~l~~~~~~~~~~~~~re~Ll~~LpG 132 (214)
T 3fhf_A 74 ----------LTLPREELE-----EKLKNLGHRFYRKRAEYIVLARR-F----K-NIKDIVESFENEKVAREFLVRNIKG 132 (214)
T ss_dssp ----------HHSCHHHHH-----HHHHHTTCTTHHHHHHHHHHHGG-G----C-CHHHHHHHSSSHHHHHHHHHHHSTT
T ss_pred ----------HCCCHHHHH-----HHHHHHhhHHHHHHHHHHHHHHH-h----h-HHHHHhcccCCcHHHHHHHHHhCCC
Confidence 124566664 4689999 64 27999999999 4 2 234555665 7899999999 9999
Q ss_pred ccccCCCcccccccccccCCCccchhhhhhccccccchHHHHHHHHhhhhcCchhhHhhhhchhhhhhccCChHHHHHHH
Q psy4725 256 IGAKVGDGVFKEHVWTLWADPSYLHYQVYSQHKLNTNSVETMLKEYFRLDENLPELYAEWSNRDAFFRQTCGDFVADCIC 335 (457)
Q Consensus 256 VGpK~a~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vAdci~ 335 (457)
|||| |||||+
T Consensus 133 VG~K----------------------------------------------------------------------TA~~vL 142 (214)
T 3fhf_A 133 IGYK----------------------------------------------------------------------EASHFL 142 (214)
T ss_dssp CCHH----------------------------------------------------------------------HHHHHH
T ss_pred CCHH----------------------------------------------------------------------HHHHHH
Confidence 9999 999999
Q ss_pred HHhcCCCCccc-cchhHHHHHHhhcccCCCCCCCCCHHHHHHHHHHH---HhhhcCcHHHHHHHHHhc
Q psy4725 336 LMSLSHLQAVP-VDTHVYQIACNHYHFQKSTSKTLTPAVYNQIRAFF---ADKFGKYAGWAHSILFCA 399 (457)
Q Consensus 336 l~~l~~~~~~P-vD~~v~~~a~~~y~~~~~~~~~lt~~~y~~i~~~~---~~~fg~~ag~A~~~lf~~ 399 (457)
+++ +. ++|| |||||.|++.|++.... ..+++|++.|.++...+ .+.||..+|....|||+.
T Consensus 143 ~~~-g~-~~~~vVDthv~Ri~~RlG~~~~-~~k~lt~~~y~e~~~~l~~~g~~~g~~~g~lDl~lW~~ 207 (214)
T 3fhf_A 143 RNV-GY-DDVAIIDRHILRELYENNYIDE-IPKTLSRRKYLEIENILRDIGEEVNLKLSELDLYIWYL 207 (214)
T ss_dssp HHT-TC-CSCCCCCHHHHHHHHHTTSSSS-CCSSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHc-CC-CCcccCcHHHHHHHHHcCCCCC-CCCcCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 998 76 7888 89999999999987542 33678899888776654 588999999999999987
No 17
>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A*
Probab=99.86 E-value=2.7e-21 Score=195.52 Aligned_cols=155 Identities=14% Similarity=0.285 Sum_probs=122.3
Q ss_pred CCCHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCcccccCCCCCCcCcccCCCCCCCCCCcccccccCCcHHHHcCCCh
Q psy4725 124 NQDLTENIFSFLCSSNNNIARISGMIDKMCKEYGTLICTLDSDGNLVGDCEKGRSHAKSCPAVTKFFAFPSIDALARPAV 203 (457)
Q Consensus 124 rqDPfE~LIsfIcSQNnnI~rI~~mi~rL~~~yGe~l~~~~g~~~~~~~~~~~r~~~~~~p~~~~~ysFPTpe~LA~~~~ 203 (457)
.+||||+||++|+|||++++++..++.+|.++ ||||++|++++.
T Consensus 36 ~~~p~~~lv~~il~qqt~~~~~~~~~~~l~~~------------------------------------~pt~~~la~a~~ 79 (369)
T 3fsp_A 36 DRDPYKVWVSEVMLQQTRVETVIPYFEQFIDR------------------------------------FPTLEALADADE 79 (369)
T ss_dssp CCCHHHHHHHHHHTTTSCHHHHHHHHHHHHHH------------------------------------CCSHHHHHTSCH
T ss_pred CCChHHHHHHHHHhccCcHHHHHHHHHHHHHH------------------------------------CCCHHHHHCCCH
Confidence 57999999999999999999999999988653 689999999864
Q ss_pred HHHH----HhcCCchhHHHHHHHHHHHHHc-CCCCcchhhcCCCHHHHHHHhhcCCCccccCCCcccccccccccCCCcc
Q psy4725 204 EAKL----RQLGFGYRAKFIQKSAEYIIQG-GGESWLERLGGKSYEEAREELQRLPGIGAKVGDGVFKEHVWTLWADPSY 278 (457)
Q Consensus 204 Ee~L----R~~g~gYRAkyI~~~A~~~~e~-~G~~~l~~l~~~~~~eare~L~~LpGVGpK~a~~vl~~~~~~~~~~~~~ 278 (457)
++| +.+||..||+||+++|+.+.++ +|. .+++++.|++|||||||
T Consensus 80 -~~l~~~i~~~G~~~ra~~l~~~a~~~~~~~~g~----------~p~~~~~L~~l~GIG~~------------------- 129 (369)
T 3fsp_A 80 -DEVLKAWEGLGYYSRVRNLHAAVKEVKTRYGGK----------VPDDPDEFSRLKGVGPY------------------- 129 (369)
T ss_dssp -HHHHHTTTTSSCTHHHHHHHHHHHHHHHHHTTC----------CCCSHHHHHTSTTCCHH-------------------
T ss_pred -HHHHHHHHhcChHHHHHHHHHHHHHHHHHcCCC----------ChhHHHHHhcCCCcCHH-------------------
Confidence 455 5577766999999999999984 332 23578999999999999
Q ss_pred chhhhhhccccccchHHHHHHHHhhhhcCchhhHhhhhchhhhhhccCChHHHHHHHHHhcCCCCccccchhHHHHHHhh
Q psy4725 279 LHYQVYSQHKLNTNSVETMLKEYFRLDENLPELYAEWSNRDAFFRQTCGDFVADCICLMSLSHLQAVPVDTHVYQIACNH 358 (457)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vAdci~l~~l~~~~~~PvD~~v~~~a~~~ 358 (457)
|||||++|+++++ ++|||+||.|++.|+
T Consensus 130 ---------------------------------------------------tA~~il~~~~~~~-~~~vD~~v~Rv~~rl 157 (369)
T 3fsp_A 130 ---------------------------------------------------TVGAVLSLAYGVP-EPAVDGNVMRVLSRL 157 (369)
T ss_dssp ---------------------------------------------------HHHHHHHHHHCCC-CCCCCHHHHHHHHHH
T ss_pred ---------------------------------------------------HHHHHHHHHCCCC-cccccHHHHHHHHHH
Confidence 9999999999996 889999999999999
Q ss_pred cccCCCCCCCCCHHHHHHHHHHHHhhhcC--cHHHHHHHHHhc
Q psy4725 359 YHFQKSTSKTLTPAVYNQIRAFFADKFGK--YAGWAHSILFCA 399 (457)
Q Consensus 359 y~~~~~~~~~lt~~~y~~i~~~~~~~fg~--~ag~A~~~lf~~ 399 (457)
|..... ...++.+.++.+.+.+.+.+ +.-|.|.++.+.
T Consensus 158 ~~~~~~---~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~G 197 (369)
T 3fsp_A 158 FLVTDD---IAKPSTRKRFEQIVREIMAYENPGAFNEALIELG 197 (369)
T ss_dssp TTCCSC---TTSHHHHHHHHHHHHHHCCSSSHHHHHHHHHHHH
T ss_pred cCcccC---ccccchHHHHHHHHHHhCChhhHHHHHHHHHHHH
Confidence 864321 12345667777766555543 444555555443
No 18
>3n5n_X A/G-specific adenine DNA glycosylase; alpha-helices, helix-hairpin-helix motif, iron-sulfur cluste hydrolase; 2.30A {Homo sapiens}
Probab=99.85 E-value=6.2e-21 Score=189.00 Aligned_cols=120 Identities=21% Similarity=0.370 Sum_probs=102.3
Q ss_pred CCHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCcccccCCCCCCcCcccCCCCCCCCCCcccccccCCcHHHHcCCChH
Q psy4725 125 QDLTENIFSFLCSSNNNIARISGMIDKMCKEYGTLICTLDSDGNLVGDCEKGRSHAKSCPAVTKFFAFPSIDALARPAVE 204 (457)
Q Consensus 125 qDPfE~LIsfIcSQNnnI~rI~~mi~rL~~~yGe~l~~~~g~~~~~~~~~~~r~~~~~~p~~~~~ysFPTpe~LA~~~~E 204 (457)
+||||+||++|+|||++++++..++.+|.++ ||||++|++++.
T Consensus 47 ~dpfe~LVs~ILsQQts~~~v~~~~~rL~~~------------------------------------fptpe~La~a~~- 89 (287)
T 3n5n_X 47 RRAYAVWVSEVMLQQTQVATVINYYTGWMQK------------------------------------WPTLQDLASASL- 89 (287)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH------------------------------------CCSHHHHHTSCH-
T ss_pred CCHHHHHHHHHHhCCCcHHHHHHHHHHHHHH------------------------------------CCCHHHHHcCCH-
Confidence 5799999999999999999999999988653 689999999864
Q ss_pred HHH----HhcCCchhHHHHHHHHHHHHHc-CCCCcchhhcCCCHHHHHHHhhc-CCCccccCCCcccccccccccCCCcc
Q psy4725 205 AKL----RQLGFGYRAKFIQKSAEYIIQG-GGESWLERLGGKSYEEAREELQR-LPGIGAKVGDGVFKEHVWTLWADPSY 278 (457)
Q Consensus 205 e~L----R~~g~gYRAkyI~~~A~~~~e~-~G~~~l~~l~~~~~~eare~L~~-LpGVGpK~a~~vl~~~~~~~~~~~~~ 278 (457)
++| +.+||..||+||+++|+.|.++ +|. .++.++.|++ |||||+|
T Consensus 90 eel~~~ir~lG~~~KA~~L~~~A~~i~~~~~g~----------~p~~~~~Ll~~LpGIG~k------------------- 140 (287)
T 3n5n_X 90 EEVNQLWAGLGYYSRGRRLQEGARKVVEELGGH----------MPRTAETLQQLLPGVGRY------------------- 140 (287)
T ss_dssp HHHHHHHTTSSCHHHHHHHHHHHHHHHHHSTTC----------CCSSHHHHHHHSTTCCHH-------------------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCC----------CcHHHHHHHHHcCCCCHH-------------------
Confidence 344 5667766999999999999985 332 1235788998 9999999
Q ss_pred chhhhhhccccccchHHHHHHHHhhhhcCchhhHhhhhchhhhhhccCChHHHHHHHHHhcCCCCccccchhHHHHHHhh
Q psy4725 279 LHYQVYSQHKLNTNSVETMLKEYFRLDENLPELYAEWSNRDAFFRQTCGDFVADCICLMSLSHLQAVPVDTHVYQIACNH 358 (457)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vAdci~l~~l~~~~~~PvD~~v~~~a~~~ 358 (457)
|||||++|+++++ +||||+||.|++.|+
T Consensus 141 ---------------------------------------------------TA~~iL~~a~g~p-~~~VDt~V~Rv~~Rl 168 (287)
T 3n5n_X 141 ---------------------------------------------------TAGAIASIAFGQA-TGVVDGNVARVLCRV 168 (287)
T ss_dssp ---------------------------------------------------HHHHHHHHHSCCC-CCCCCHHHHHHHHHH
T ss_pred ---------------------------------------------------HHHHHHHHhcCCC-CccccHHHHHHHHHh
Confidence 9999999999996 789999999999999
Q ss_pred cccC
Q psy4725 359 YHFQ 362 (457)
Q Consensus 359 y~~~ 362 (457)
|...
T Consensus 169 g~i~ 172 (287)
T 3n5n_X 169 RAIG 172 (287)
T ss_dssp TTCC
T ss_pred CCCC
Confidence 8753
No 19
>4e9f_A Methyl-CPG-binding domain protein 4; HHH DNA glycosylase family, hydrolase-DNA complex; HET: DNA 3DR; 1.79A {Homo sapiens} PDB: 4e9e_A* 4e9g_A* 4e9h_A* 4ea5_A* 4dk9_A* 1ngn_A 4ea4_A* 4ew4_A* 4evv_A* 4ew0_A* 3iho_A
Probab=99.67 E-value=3.1e-16 Score=143.64 Aligned_cols=116 Identities=18% Similarity=0.161 Sum_probs=96.1
Q ss_pred cCCCHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCcccccCCCCCCcCcccCCCCCCCCCCcccccccCCcHHHHcCCC
Q psy4725 123 LNQDLTENIFSFLCSSNNNIARISGMIDKMCKEYGTLICTLDSDGNLVGDCEKGRSHAKSCPAVTKFFAFPSIDALARPA 202 (457)
Q Consensus 123 LrqDPfE~LIsfIcSQNnnI~rI~~mi~rL~~~yGe~l~~~~g~~~~~~~~~~~r~~~~~~p~~~~~ysFPTpe~LA~~~ 202 (457)
...|||+.||+.|+|||+++.++.....+|.++ ||||++|++++
T Consensus 27 ~~~dP~~vLVs~ILsqQT~~~~v~~~~~~l~~~------------------------------------~pt~~~la~a~ 70 (161)
T 4e9f_A 27 LFHDPWKLLIATIFLNRTSGKMAIPVLWKFLEK------------------------------------YPSAEVARTAD 70 (161)
T ss_dssp HTTSHHHHHHHHHHTTTSCHHHHHHHHHHHHHH------------------------------------SCSHHHHTTSC
T ss_pred hcCChHHHHHHHHHHhhCcHHHHHHHHHHHHHH------------------------------------CCCHHHHhccC
Confidence 357999999999999999999999999988664 58999999986
Q ss_pred hHH---HHHhcCCch-hHHHHHHHHHHHHHcCCCCcchhhcCCCHHHHHHHhhcCCCccccCCCcccccccccccCCCcc
Q psy4725 203 VEA---KLRQLGFGY-RAKFIQKSAEYIIQGGGESWLERLGGKSYEEAREELQRLPGIGAKVGDGVFKEHVWTLWADPSY 278 (457)
Q Consensus 203 ~Ee---~LR~~g~gY-RAkyI~~~A~~~~e~~G~~~l~~l~~~~~~eare~L~~LpGVGpK~a~~vl~~~~~~~~~~~~~ 278 (457)
.++ .++.+||-. ||++|+++|+.+.... ++.|++|||||++
T Consensus 71 ~~el~~~i~~lG~y~~KAk~i~~~a~~~vp~~----------------~~~L~~LpGVG~y------------------- 115 (161)
T 4e9f_A 71 WRDVSELLKPLGLYDLRAKTIVKFSDEYLTKQ----------------WKYPIELHGIGKY------------------- 115 (161)
T ss_dssp HHHHHHHHGGGSCHHHHHHHHHHHHHHHHHSC----------------CSSGGGSTTCCHH-------------------
T ss_pred hHhHHhHhhhcCCHHHHHHHHHHHhCCcCCCC----------------hhhhhcCCCchHH-------------------
Confidence 432 235567642 7999999998777622 3568999999999
Q ss_pred chhhhhhccccccchHHHHHHHHhhhhcCchhhHhhhhchhhhhhccCChHHHHHHHHHhcCC-CCccccchhHHHHHHh
Q psy4725 279 LHYQVYSQHKLNTNSVETMLKEYFRLDENLPELYAEWSNRDAFFRQTCGDFVADCICLMSLSH-LQAVPVDTHVYQIACN 357 (457)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vAdci~l~~l~~-~~~~PvD~~v~~~a~~ 357 (457)
|||||++|+++. ..++|+|..++++..+
T Consensus 116 ---------------------------------------------------TAdav~~F~~~e~~~V~p~D~~l~r~l~w 144 (161)
T 4e9f_A 116 ---------------------------------------------------GNDSYRIFCVNEWKQVHPEDHKLNKYHDW 144 (161)
T ss_dssp ---------------------------------------------------HHHHHHHHTSSCGGGCCCCSHHHHHHHHH
T ss_pred ---------------------------------------------------HHHHHHHHHCCCCCCCCCCcHHHHHHHHH
Confidence 999999999986 4678899999999887
Q ss_pred hcc
Q psy4725 358 HYH 360 (457)
Q Consensus 358 ~y~ 360 (457)
.+.
T Consensus 145 l~~ 147 (161)
T 4e9f_A 145 LWE 147 (161)
T ss_dssp HHH
T ss_pred HHc
Confidence 764
No 20
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=73.52 E-value=0.6 Score=47.28 Aligned_cols=87 Identities=21% Similarity=0.283 Sum_probs=51.1
Q ss_pred CCchh-HHHHHHHHHHHHHcCCCCcchhhcCCCHHHHHHHhhcCCCccccCCCcccccccccccCCCccchhhhhhcccc
Q psy4725 211 GFGYR-AKFIQKSAEYIIQGGGESWLERLGGKSYEEAREELQRLPGIGAKVGDGVFKEHVWTLWADPSYLHYQVYSQHKL 289 (457)
Q Consensus 211 g~gYR-AkyI~~~A~~~~e~~G~~~l~~l~~~~~~eare~L~~LpGVGpK~a~~vl~~~~~~~~~~~~~~~~~~~~~~~~ 289 (457)
|+|-+ |+-|.++.+ . |.-..|+.|+.-....+...|++++|||||+|.-++..|+=++ .++ . --.+.+
T Consensus 68 GIG~~~A~kI~E~l~---t-G~~~~le~L~~d~~~~~l~~l~~I~GvG~kta~~l~~~Gi~tl----edL--~-~~~~~L 136 (360)
T 2ihm_A 68 YFGEHSTRVIQELLE---H-GTCEEVKQVRCSERYQTMKLFTQVFGVGVKTANRWYQEGLRTL----DEL--R-EQPQRL 136 (360)
T ss_dssp TCCHHHHHHHHHHHH---H-SCCHHHHHHHHSHHHHHHHHHHTSTTCCHHHHHHHHHTTCCSH----HHH--H-TCCTTC
T ss_pred CCCHHHHHHHHHHHH---c-CChHHHHHHhcccchHHHHHHhCCCCCCHHHHHHHHHcCCCCH----HHH--H-hcccch
Confidence 88876 666665543 3 2233566666556778889999999999997765554332111 111 1 111233
Q ss_pred ccchHHHHHHHHhhhhcCch
Q psy4725 290 NTNSVETMLKEYFRLDENLP 309 (457)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~ 309 (457)
.+.++..|+-|.+..+-.|
T Consensus 137 -~~~~~~Gl~~~~d~~~rip 155 (360)
T 2ihm_A 137 -TQQQKAGLQYYQDLSTPVR 155 (360)
T ss_dssp -CHHHHHHHHTHHHHHSCEE
T ss_pred -HHHHHHHHHHHHHhcCCEE
Confidence 3457777776766665444
No 21
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=70.61 E-value=0.76 Score=46.02 Aligned_cols=90 Identities=24% Similarity=0.361 Sum_probs=51.0
Q ss_pred HHhc-CCchh-HHHHHHHHHHHHHcCCC-CcchhhcCCCHHHHHHHhhcCCCccccCCCcccccccccccCCCccchhhh
Q psy4725 207 LRQL-GFGYR-AKFIQKSAEYIIQGGGE-SWLERLGGKSYEEAREELQRLPGIGAKVGDGVFKEHVWTLWADPSYLHYQV 283 (457)
Q Consensus 207 LR~~-g~gYR-AkyI~~~A~~~~e~~G~-~~l~~l~~~~~~eare~L~~LpGVGpK~a~~vl~~~~~~~~~~~~~~~~~~ 283 (457)
|..+ |+|-+ |+-|.++.+ . |. ..|+.|+..........|+++||||||+|.-++..|+=++ --+..
T Consensus 59 l~~LpGIG~~~A~kI~E~l~---t--G~~~~le~l~~~~~~~~l~~l~~V~GiGpk~a~~l~~~Gi~tl------edL~~ 127 (335)
T 2fmp_A 59 AKKLPGVGTKIAEKIDEFLA---T--GKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKTL------EDLRK 127 (335)
T ss_dssp HHTSTTCCHHHHHHHHHHHH---H--SSCHHHHHHHHCHHHHHHHHHTTSTTCCHHHHHHHHHTTCCSH------HHHHT
T ss_pred HhcCCCCcHHHHHHHHHHHH---h--CCcHHHHHHHcccchhHHHHHhCCCCCCHHHHHHHHHcCCCCH------HHHHH
Confidence 5554 88876 666665543 3 44 3466665555578899999999999996654443221110 00111
Q ss_pred hhccccccchHHHHHHHHhhhhcCch
Q psy4725 284 YSQHKLNTNSVETMLKEYFRLDENLP 309 (457)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (457)
+++.+.. .++..|+-|.+..+-+|
T Consensus 128 -a~~~l~~-~~~~gl~~~~~~~~rip 151 (335)
T 2fmp_A 128 -NEDKLNH-HQRIGLKYFGDFEKRIP 151 (335)
T ss_dssp -CGGGSCH-HHHHHHHTHHHHTSCEE
T ss_pred -hhhhhHH-HHHHHHHHHHHhcCcEE
Confidence 1334432 46666666666655444
No 22
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=69.99 E-value=6.4 Score=37.25 Aligned_cols=57 Identities=25% Similarity=0.409 Sum_probs=34.6
Q ss_pred cccccCCcHHHHcCCChHHHHHh-cCCchh-HHHHHHH------HHHHHHcCCCCcchhhcCCCHHHHHHHhhcCCCccc
Q psy4725 187 TKFFAFPSIDALARPAVEAKLRQ-LGFGYR-AKFIQKS------AEYIIQGGGESWLERLGGKSYEEAREELQRLPGIGA 258 (457)
Q Consensus 187 ~~~ysFPTpe~LA~~~~Ee~LR~-~g~gYR-AkyI~~~------A~~~~e~~G~~~l~~l~~~~~~eare~L~~LpGVGp 258 (457)
...|-|.+.+.-. ....|-. -|.|-+ |..|.+. .++|.+ + -.+.|+++||||+
T Consensus 73 ~~LyGF~~~~Er~---lf~~L~sv~GIGpk~A~~Ils~~~~~~l~~aI~~--~--------------d~~~L~~vpGIG~ 133 (212)
T 2ztd_A 73 MTLYGFPDGETRD---LFLTLLSVSGVGPRLAMAALAVHDAPALRQVLAD--G--------------NVAALTRVPGIGK 133 (212)
T ss_dssp EEEEEESSHHHHH---HHHHHHTSTTCCHHHHHHHHHHSCHHHHHHHHHT--T--------------CHHHHHTSTTCCH
T ss_pred cceEecCcHHHHH---HHHHhcCcCCcCHHHHHHHHHhCCHHHHHHHHHh--C--------------CHHHHhhCCCCCH
Confidence 5678898864432 1223333 388876 6666654 233333 1 1378999999999
Q ss_pred cCCC
Q psy4725 259 KVGD 262 (457)
Q Consensus 259 K~a~ 262 (457)
|+|.
T Consensus 134 KtA~ 137 (212)
T 2ztd_A 134 RGAE 137 (212)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9443
No 23
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=69.12 E-value=0.87 Score=46.52 Aligned_cols=91 Identities=18% Similarity=0.135 Sum_probs=51.8
Q ss_pred HHhc-CCchh-HHHHHHHHHHHHHcCCCC-cchhhcCCCHHHHHHHhhcCCCccccCCCcccccccccccCCCccchhhh
Q psy4725 207 LRQL-GFGYR-AKFIQKSAEYIIQGGGES-WLERLGGKSYEEAREELQRLPGIGAKVGDGVFKEHVWTLWADPSYLHYQV 283 (457)
Q Consensus 207 LR~~-g~gYR-AkyI~~~A~~~~e~~G~~-~l~~l~~~~~~eare~L~~LpGVGpK~a~~vl~~~~~~~~~~~~~~~~~~ 283 (457)
|..+ |+|-+ |+-|.++.+ . |.. .|+.|+.-....+...|++++|||||+|.-++..|+=++ .++ .
T Consensus 82 l~~lpGIG~~ia~kI~E~l~---t--G~~~~le~l~~d~~~~~l~~l~~I~GvGpk~a~~ly~~Gi~tl----edL---~ 149 (381)
T 1jms_A 82 TEGIPCLGDKVKSIIEGIIE---D--GESSEAKAVLNDERYKSFKLFTSVFGVGLKTAEKWFRMGFRTL----SKI---Q 149 (381)
T ss_dssp GTTCSSCCHHHHHHHHHHHH---H--SSCHHHHHHHHCHHHHHHHHHHTSTTCCHHHHHHHHHTTCCSH----HHH---H
T ss_pred HhcCCCCcHHHHHHHHHHHH---c--CCcHHHHHHhcCcchhHHHHHHccCCCCHHHHHHHHHcCCCcH----HHH---H
Confidence 4443 88876 565655443 3 543 566676656778889999999999996655544322111 111 1
Q ss_pred hhccccccchHHHHHHHHhhhhcCch
Q psy4725 284 YSQHKLNTNSVETMLKEYFRLDENLP 309 (457)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (457)
.++...-.+.++..|+-|.+..+-.|
T Consensus 150 ~~~g~kl~~~q~~Gl~~~~d~~~rip 175 (381)
T 1jms_A 150 SDKSLRFTQMQKAGFLYYEDLVSCVN 175 (381)
T ss_dssp HCSSCCCCHHHHHHHHTHHHHHSCBC
T ss_pred hCcccchHHHHHHHHHHHHHhcCCEE
Confidence 01111222346677776666655444
No 24
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=66.42 E-value=1.8 Score=43.30 Aligned_cols=52 Identities=25% Similarity=0.261 Sum_probs=33.7
Q ss_pred HHhc-CCchh-HHHHHHHHHHHHHcCCCCcchhhcCCCHHHHHHHhhcCCCccccCCCcc
Q psy4725 207 LRQL-GFGYR-AKFIQKSAEYIIQGGGESWLERLGGKSYEEAREELQRLPGIGAKVGDGV 264 (457)
Q Consensus 207 LR~~-g~gYR-AkyI~~~A~~~~e~~G~~~l~~l~~~~~~eare~L~~LpGVGpK~a~~v 264 (457)
|..+ |+|-+ |+-|.++.+ .|.-..|+.|+. .++ +.+.|+++||||||+|.-+
T Consensus 59 l~~lpGIG~~~A~kI~E~l~----tG~~~~le~l~~-~~p-~l~ll~~v~GiG~k~a~~l 112 (335)
T 2bcq_A 59 ACSIPGIGKRMAEKIIEILE----SGHLRKLDHISE-SVP-VLELFSNIWGAGTKTAQMW 112 (335)
T ss_dssp HHTSTTCCHHHHHHHHHHHH----SSSCGGGGGCCT-THH-HHHHHHTSTTCCHHHHHHH
T ss_pred HhcCCCccHHHHHHHHHHHH----cCCchHHHHHhh-hhH-HHHHHhcCCCcCHHHHHHH
Confidence 5554 88976 666665533 333345667754 344 7888889999999955433
No 25
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=57.65 E-value=10 Score=40.17 Aligned_cols=52 Identities=27% Similarity=0.337 Sum_probs=32.4
Q ss_pred HHhc-CCchh-HHHHHHHHHHHHHcCCCCc-chhhcCCCHHHHHHHhhcCCCccccCCCcc
Q psy4725 207 LRQL-GFGYR-AKFIQKSAEYIIQGGGESW-LERLGGKSYEEAREELQRLPGIGAKVGDGV 264 (457)
Q Consensus 207 LR~~-g~gYR-AkyI~~~A~~~~e~~G~~~-l~~l~~~~~~eare~L~~LpGVGpK~a~~v 264 (457)
|..+ |.|-. +.+|.... .+ |... ++.+.. ...+....|++++|||||+|.-+
T Consensus 55 ~~~lp~iG~~~~~~i~~~v---~~--g~~~l~~~~~~-~~~~~~~~l~~v~GvGpk~A~~~ 109 (575)
T 3b0x_A 55 LMELPGVGPDLAEKILEFL---RT--GKVRKHEELSR-KVPRGVLEVMEVPGVGPKTARLL 109 (575)
T ss_dssp HHTSTTCCHHHHHHHHHHH---HH--SSCHHHHHHHH-HSCHHHHHHHTSTTTCHHHHHHH
T ss_pred HHhCCCCCHHHHHHHHHHH---Hc--CcHHHHhhhhh-hhHHHHHHHhcCCCcCHHHHHHH
Confidence 6666 78876 56666544 34 4432 233332 23456788999999999955433
No 26
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A*
Probab=57.50 E-value=5.5 Score=32.41 Aligned_cols=17 Identities=29% Similarity=0.571 Sum_probs=15.2
Q ss_pred HHHHHHHhhcCCCcccc
Q psy4725 243 YEEAREELQRLPGIGAK 259 (457)
Q Consensus 243 ~~eare~L~~LpGVGpK 259 (457)
-..+...|..+||||+|
T Consensus 13 N~~~~s~L~~IpGIG~k 29 (84)
T 1z00_B 13 NPGPQDFLLKMPGVNAK 29 (84)
T ss_dssp CHHHHHHHHTCSSCCHH
T ss_pred cccHHHHHHhCCCCCHH
Confidence 36788999999999999
No 27
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=57.29 E-value=6 Score=36.72 Aligned_cols=24 Identities=25% Similarity=0.290 Sum_probs=17.5
Q ss_pred CHHHHHHHhhcCCCccccCCCccc
Q psy4725 242 SYEEAREELQRLPGIGAKVGDGVF 265 (457)
Q Consensus 242 ~~~eare~L~~LpGVGpK~a~~vl 265 (457)
...+....|.+++|||||+|.-+|
T Consensus 66 ~ek~~f~~L~~v~GIGpk~A~~iL 89 (191)
T 1ixr_A 66 ENLALFELLLSVSGVGPKVALALL 89 (191)
T ss_dssp HHHHHHHHHHSSSCCCHHHHHHHH
T ss_pred HHHHHHHHHhcCCCcCHHHHHHHH
Confidence 356666789999999999544333
No 28
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=56.09 E-value=8.2 Score=36.11 Aligned_cols=23 Identities=22% Similarity=0.328 Sum_probs=16.8
Q ss_pred CHHHHHHHhhcCCCccccCCCcc
Q psy4725 242 SYEEAREELQRLPGIGAKVGDGV 264 (457)
Q Consensus 242 ~~~eare~L~~LpGVGpK~a~~v 264 (457)
...+....|.+++|||||+|.-+
T Consensus 67 ~ek~~f~~L~~V~GIGpk~A~~i 89 (203)
T 1cuk_A 67 QERTLFKELIKTNGVGPKLALAI 89 (203)
T ss_dssp HHHHHHHHHHHSSSCCHHHHHHH
T ss_pred HHHHHHHHHhcCCCcCHHHHHHH
Confidence 35566678999999999944333
No 29
>3vdp_A Recombination protein RECR; zinc finger, DNA repair, DNA binding; 2.45A {Thermoanaerobacter tengcongensis} PDB: 3vdu_A 3ve5_D
Probab=51.48 E-value=9.5 Score=36.35 Aligned_cols=17 Identities=53% Similarity=0.841 Sum_probs=15.7
Q ss_pred HHHHHHHhhcCCCcccc
Q psy4725 243 YEEAREELQRLPGIGAK 259 (457)
Q Consensus 243 ~~eare~L~~LpGVGpK 259 (457)
.++..+.|.+|||||||
T Consensus 21 l~~LI~~l~~LPGIG~K 37 (212)
T 3vdp_A 21 VAKLIEELSKLPGIGPK 37 (212)
T ss_dssp HHHHHHHHHTSTTCCHH
T ss_pred HHHHHHHHHHCCCCCHH
Confidence 67888999999999999
No 30
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=50.16 E-value=4 Score=31.15 Aligned_cols=13 Identities=38% Similarity=0.807 Sum_probs=11.6
Q ss_pred HHHhhcCCCcccc
Q psy4725 247 REELQRLPGIGAK 259 (457)
Q Consensus 247 re~L~~LpGVGpK 259 (457)
.+.|..+||||+|
T Consensus 3 ~s~L~~IpGIG~k 15 (63)
T 2a1j_A 3 QDFLLKMPGVNAK 15 (63)
T ss_dssp CHHHHTSTTCCHH
T ss_pred HhHHHcCCCCCHH
Confidence 4679999999999
No 31
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3
Probab=48.09 E-value=26 Score=27.11 Aligned_cols=13 Identities=31% Similarity=0.713 Sum_probs=11.2
Q ss_pred HHHhhcCCCcccc
Q psy4725 247 REELQRLPGIGAK 259 (457)
Q Consensus 247 re~L~~LpGVGpK 259 (457)
...|..+||||++
T Consensus 23 ~~~L~~I~gIG~~ 35 (78)
T 1kft_A 23 TSSLETIEGVGPK 35 (78)
T ss_dssp CCGGGGCTTCSSS
T ss_pred HHHHhcCCCCCHH
Confidence 4568899999999
No 32
>1vdd_A Recombination protein RECR; helix-hairpin-helix, zinc finger, toprim, walker B ATP binding motif; 2.50A {Deinococcus radiodurans} SCOP: e.49.1.1 PDB: 2v1c_A
Probab=47.02 E-value=11 Score=36.16 Aligned_cols=17 Identities=53% Similarity=0.782 Sum_probs=15.7
Q ss_pred HHHHHHHhhcCCCcccc
Q psy4725 243 YEEAREELQRLPGIGAK 259 (457)
Q Consensus 243 ~~eare~L~~LpGVGpK 259 (457)
.++..+.|.+|||||||
T Consensus 7 l~~LI~~l~~LPGIG~K 23 (228)
T 1vdd_A 7 LVSLIRELSRLPGIGPK 23 (228)
T ss_dssp HHHHHHHHHTSTTCCHH
T ss_pred HHHHHHHHhHCCCCCHH
Confidence 47889999999999999
No 33
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5
Probab=42.94 E-value=36 Score=26.84 Aligned_cols=15 Identities=13% Similarity=0.213 Sum_probs=12.5
Q ss_pred HHHHHhhcCCCcccc
Q psy4725 245 EAREELQRLPGIGAK 259 (457)
Q Consensus 245 eare~L~~LpGVGpK 259 (457)
.....|..+||||++
T Consensus 16 ~~~~~L~~IpgIG~~ 30 (89)
T 1z00_A 16 RVTECLTTVKSVNKT 30 (89)
T ss_dssp HHHHHHTTSSSCCHH
T ss_pred HHHHHHHcCCCCCHH
Confidence 345678899999999
No 34
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5
Probab=42.44 E-value=47 Score=24.74 Aligned_cols=16 Identities=31% Similarity=0.453 Sum_probs=13.2
Q ss_pred HHHHHHhhcCCCcccc
Q psy4725 244 EEAREELQRLPGIGAK 259 (457)
Q Consensus 244 ~eare~L~~LpGVGpK 259 (457)
+.....|..+||||++
T Consensus 10 ~~~~~~L~~i~giG~~ 25 (75)
T 1x2i_A 10 ERQRLIVEGLPHVSAT 25 (75)
T ss_dssp HHHHHHHTTSTTCCHH
T ss_pred HHHHHHHcCCCCCCHH
Confidence 3456779999999999
No 35
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=42.22 E-value=13 Score=34.51 Aligned_cols=58 Identities=21% Similarity=0.358 Sum_probs=33.3
Q ss_pred ccccCCcHHHHcCCChHHHHHh-cCCch-hHHHHHHH------HHHHHHcCCCCcchhhcCCCHHHHHHHhhcCCCcccc
Q psy4725 188 KFFAFPSIDALARPAVEAKLRQ-LGFGY-RAKFIQKS------AEYIIQGGGESWLERLGGKSYEEAREELQRLPGIGAK 259 (457)
Q Consensus 188 ~~ysFPTpe~LA~~~~Ee~LR~-~g~gY-RAkyI~~~------A~~~~e~~G~~~l~~l~~~~~~eare~L~~LpGVGpK 259 (457)
..|-|.+.++-.- -..|-. -|.|- +|..|.+. .++|.+ .+ .+.|.++||||+|
T Consensus 58 ~l~gf~~~~ek~~---f~~L~~v~GIGpk~A~~iL~~f~~~~l~~aI~~------------~d----~~~L~~vpGIG~K 118 (191)
T 1ixr_A 58 SLYGFPDEENLAL---FELLLSVSGVGPKVALALLSALPPRLLARALLE------------GD----ARLLTSASGVGRR 118 (191)
T ss_dssp CEEEESSHHHHHH---HHHHHSSSCCCHHHHHHHHHHSCHHHHHHHHHT------------TC----HHHHTTSTTCCHH
T ss_pred HhhccCCHHHHHH---HHHHhcCCCcCHHHHHHHHHhCChHHHHHHHHh------------CC----HHHHHhCCCCCHH
Confidence 3566777655331 122333 38885 47666654 222332 22 3789999999999
Q ss_pred CCCcc
Q psy4725 260 VGDGV 264 (457)
Q Consensus 260 ~a~~v 264 (457)
+|.-|
T Consensus 119 ~A~rI 123 (191)
T 1ixr_A 119 LAERI 123 (191)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55433
No 36
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=41.65 E-value=41 Score=33.86 Aligned_cols=44 Identities=16% Similarity=0.077 Sum_probs=30.4
Q ss_pred cCCchhHHHHHHHHHHHHHcCCCCcchhhcCCCHHHHHHHhhcCCCccccCCCcc
Q psy4725 210 LGFGYRAKFIQKSAEYIIQGGGESWLERLGGKSYEEAREELQRLPGIGAKVGDGV 264 (457)
Q Consensus 210 ~g~gYRAkyI~~~A~~~~e~~G~~~l~~l~~~~~~eare~L~~LpGVGpK~a~~v 264 (457)
.|--||++.-..+|..|.+-. ..+.++ +.|.+|||||+++|..|
T Consensus 34 ~g~~~r~~AYr~Aa~~l~~l~--~~i~~~---------~~l~~lpGIG~~~A~kI 77 (360)
T 2ihm_A 34 EANEGRLLSFSRAASVLKSLP--CPVASL---------SQLHGLPYFGEHSTRVI 77 (360)
T ss_dssp TTCHHHHHHHHHHHHHHHHCS--SCCCSG---------GGGTTCTTCCHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHhCC--cccCCH---------HHHhcCCCCCHHHHHHH
Confidence 464489998999999998732 223322 13999999999955444
No 37
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
Probab=41.26 E-value=38 Score=26.98 Aligned_cols=14 Identities=14% Similarity=0.218 Sum_probs=11.9
Q ss_pred HHHHhhcCCCcccc
Q psy4725 246 AREELQRLPGIGAK 259 (457)
Q Consensus 246 are~L~~LpGVGpK 259 (457)
....|..+||||++
T Consensus 30 ~~~~L~~IpgIG~~ 43 (91)
T 2a1j_B 30 VTECLTTVKSVNKT 43 (91)
T ss_dssp HHHHHTTSTTCCHH
T ss_pred HHHHHHcCCCCCHH
Confidence 45678899999999
No 38
>3gfk_B DNA-directed RNA polymerase subunit alpha; protein-protein complex, cytoplasm, redox-active center, stress response, transcription; 2.30A {Bacillus subtilis} SCOP: a.60.3.1
Probab=37.45 E-value=22 Score=28.74 Aligned_cols=42 Identities=24% Similarity=0.397 Sum_probs=31.4
Q ss_pred HHhcCCchhHHHHHHHHHHHHHcCCCCcchhhcCCCHHHHHHHhhcCCCcccc
Q psy4725 207 LRQLGFGYRAKFIQKSAEYIIQGGGESWLERLGGKSYEEAREELQRLPGIGAK 259 (457)
Q Consensus 207 LR~~g~gYRAkyI~~~A~~~~e~~G~~~l~~l~~~~~~eare~L~~LpGVGpK 259 (457)
+.+|+++-||..-..-| |-..+..|-..+. +.|++++|+|+|
T Consensus 18 Ie~L~LS~Ra~NcLk~a-------gI~Tv~dL~~~se----~dLlki~n~G~k 59 (79)
T 3gfk_B 18 IEELDLSVRSYNCLKRA-------GINTVQELANKTE----EDMMKVRNLGRK 59 (79)
T ss_dssp GGGSCCBHHHHHHHHHT-------TCCBHHHHTTCCH----HHHTTSTTCHHH
T ss_pred HHHhCCCHHHHHHHHHh-------CCCCHHHHHhCCH----HHHHHcCCCCHh
Confidence 55678998886554433 5567777777775 569999999999
No 39
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}
Probab=37.21 E-value=28 Score=37.00 Aligned_cols=21 Identities=19% Similarity=0.235 Sum_probs=16.0
Q ss_pred HHHHHHhhcCCCccccCCCcc
Q psy4725 244 EEAREELQRLPGIGAKVGDGV 264 (457)
Q Consensus 244 ~eare~L~~LpGVGpK~a~~v 264 (457)
.+....|++++|||||+|.-+
T Consensus 93 ~~~~~~L~~v~GVGpk~A~~i 113 (578)
T 2w9m_A 93 PPGLLDLLGVRGLGPKKIRSL 113 (578)
T ss_dssp CHHHHHHTTSTTCCHHHHHHH
T ss_pred HHHHHHHhCCCCcCHHHHHHH
Confidence 446788999999999955333
No 40
>2duy_A Competence protein comea-related protein; helix-hairpin-helix, structural genomics, NPPSFA; 1.75A {Thermus thermophilus} SCOP: a.60.2.7
Probab=31.86 E-value=20 Score=27.58 Aligned_cols=13 Identities=62% Similarity=0.892 Sum_probs=11.3
Q ss_pred HHHhhcCCCcccc
Q psy4725 247 REELQRLPGIGAK 259 (457)
Q Consensus 247 re~L~~LpGVGpK 259 (457)
.+.|.++||||++
T Consensus 26 ~~~L~~ipGIG~~ 38 (75)
T 2duy_A 26 LEELMALPGIGPV 38 (75)
T ss_dssp HHHHTTSTTCCHH
T ss_pred HHHHHhCCCCCHH
Confidence 3568999999999
No 41
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=30.72 E-value=37 Score=33.79 Aligned_cols=43 Identities=21% Similarity=0.261 Sum_probs=29.8
Q ss_pred CCchhHHHHHHHHHHHHHcCCCCcchhhcCCCHHHHHHHhhcCCCccccCCCcc
Q psy4725 211 GFGYRAKFIQKSAEYIIQGGGESWLERLGGKSYEEAREELQRLPGIGAKVGDGV 264 (457)
Q Consensus 211 g~gYRAkyI~~~A~~~~e~~G~~~l~~l~~~~~~eare~L~~LpGVGpK~a~~v 264 (457)
|--||++.-..+|..|..-. ..+.+ .+.|.+|||||+++|..|
T Consensus 31 g~~~r~~AYr~Aa~~l~~l~--~~i~~---------~~~l~~lpGIG~~~A~kI 73 (335)
T 2bcq_A 31 GDKWRALGYAKAINALKSFH--KPVTS---------YQEACSIPGIGKRMAEKI 73 (335)
T ss_dssp TCHHHHHHHHHHHHHHHSCC--SCCCC---------HHHHHTSTTCCHHHHHHH
T ss_pred CccHhHHHHHHHHHHHHhCC--ccccC---------HHHHhcCCCccHHHHHHH
Confidence 54589999999999887622 22222 224999999999955444
No 42
>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli}
Probab=29.54 E-value=44 Score=36.06 Aligned_cols=31 Identities=23% Similarity=0.259 Sum_probs=19.5
Q ss_pred CcHHHHcCCChHHHHHhc-CCchh-HHHHHHHHH
Q psy4725 193 PSIDALARPAVEAKLRQL-GFGYR-AKFIQKSAE 224 (457)
Q Consensus 193 PTpe~LA~~~~Ee~LR~~-g~gYR-AkyI~~~A~ 224 (457)
-++.+|-.+. .++|..+ |||-+ |..|.+..+
T Consensus 469 ~~~~Dly~L~-~~~L~~l~g~geKsa~nL~~aIe 501 (586)
T 4glx_A 469 HTPADLFKLT-AGKLTGLERMGPKSAQNVVNALE 501 (586)
T ss_dssp SSGGGGGTCC-HHHHHTSTTCCHHHHHHHHHHHH
T ss_pred CCHHHHhCCC-HHHHhcccCccHHHHHHHHHHHH
Confidence 4566666664 4566665 89865 677666544
No 43
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=29.01 E-value=47 Score=33.01 Aligned_cols=40 Identities=23% Similarity=0.305 Sum_probs=28.1
Q ss_pred chhHHHHHHHHHHHHHcCCCCcchhhcCCCHHHHHHHhhcCCCccccCCCc
Q psy4725 213 GYRAKFIQKSAEYIIQGGGESWLERLGGKSYEEAREELQRLPGIGAKVGDG 263 (457)
Q Consensus 213 gYRAkyI~~~A~~~~e~~G~~~l~~l~~~~~~eare~L~~LpGVGpK~a~~ 263 (457)
.||++.-..+|..|.+-.. .+.+ . ..|.+|||||+++|..
T Consensus 33 ~~rv~AYr~Aa~~l~~l~~--~i~~-----~----~~l~~LpGIG~~~A~k 72 (335)
T 2fmp_A 33 IHKYNAYRKAASVIAKYPH--KIKS-----G----AEAKKLPGVGTKIAEK 72 (335)
T ss_dssp HHHHHHHHHHHHHHHHCSS--CCCC-----H----HHHHTSTTCCHHHHHH
T ss_pred cHHHHHHHHHHHHHHhCCc--cccC-----H----HHHhcCCCCcHHHHHH
Confidence 3899999999999887322 2222 2 2499999999994433
No 44
>2edu_A Kinesin-like protein KIF22; kinesin-like DNA binding domain, helix turn helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.2.7
Probab=27.44 E-value=91 Score=25.14 Aligned_cols=12 Identities=42% Similarity=0.703 Sum_probs=10.8
Q ss_pred HHhhcCCCcccc
Q psy4725 248 EELQRLPGIGAK 259 (457)
Q Consensus 248 e~L~~LpGVGpK 259 (457)
+.|.++||||++
T Consensus 40 ~~L~~ipGIG~~ 51 (98)
T 2edu_A 40 RDLRSLQRIGPK 51 (98)
T ss_dssp HHHHHSTTCCHH
T ss_pred HHHHHCCCCCHH
Confidence 568999999999
No 45
>3q8k_A Flap endonuclease 1; helix-3 turn-helix, hydrophobic wedge, 3' flap binding site, hydrolase-DNA complex, DNA repair, replication; HET: DNA; 2.20A {Homo sapiens} PDB: 3q8l_A* 3q8m_A*
Probab=25.94 E-value=7.8 Score=38.77 Aligned_cols=13 Identities=31% Similarity=0.511 Sum_probs=9.4
Q ss_pred cCCCccccCCCcc
Q psy4725 252 RLPGIGAKVGDGV 264 (457)
Q Consensus 252 ~LpGVGpK~a~~v 264 (457)
.+||||||+|--+
T Consensus 236 gipGiG~KtA~kl 248 (341)
T 3q8k_A 236 SIRGIGPKRAVDL 248 (341)
T ss_dssp CCTTCCHHHHHHH
T ss_pred CCCCccHHHHHHH
Confidence 4799999966333
No 46
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=25.19 E-value=34 Score=32.24 Aligned_cols=25 Identities=12% Similarity=0.259 Sum_probs=19.5
Q ss_pred CHHHHHHHhhcCCCccccCCCcccc
Q psy4725 242 SYEEAREELQRLPGIGAKVGDGVFK 266 (457)
Q Consensus 242 ~~~eare~L~~LpGVGpK~a~~vl~ 266 (457)
...+....|.+++|||||+|.-||+
T Consensus 82 ~Er~lf~~L~sv~GIGpk~A~~Ils 106 (212)
T 2ztd_A 82 ETRDLFLTLLSVSGVGPRLAMAALA 106 (212)
T ss_dssp HHHHHHHHHHTSTTCCHHHHHHHHH
T ss_pred HHHHHHHHhcCcCCcCHHHHHHHHH
Confidence 3566778899999999996655544
No 47
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=24.73 E-value=50 Score=33.53 Aligned_cols=44 Identities=9% Similarity=0.054 Sum_probs=30.1
Q ss_pred cCCchhHHHHHHHHHHHHHcCCCCcchhhcCCCHHHHHHHhhcCCCccccCCCcc
Q psy4725 210 LGFGYRAKFIQKSAEYIIQGGGESWLERLGGKSYEEAREELQRLPGIGAKVGDGV 264 (457)
Q Consensus 210 ~g~gYRAkyI~~~A~~~~e~~G~~~l~~l~~~~~~eare~L~~LpGVGpK~a~~v 264 (457)
.|--||++.-..+|..|.+-. ..+.++ +.|.+|||||+++|..|
T Consensus 53 ~g~~~rv~AYr~Aa~~l~~l~--~~i~~~---------~~l~~lpGIG~~ia~kI 96 (381)
T 1jms_A 53 RENEGSCLAFMRASSVLKSLP--FPITSM---------KDTEGIPCLGDKVKSII 96 (381)
T ss_dssp TTCHHHHHHHHHHHHHHHTCS--SCCCSG---------GGGTTCSSCCHHHHHHH
T ss_pred hCCcHHHHHHHHHHHHHHhCC--ccccCH---------HHHhcCCCCcHHHHHHH
Confidence 464489999999999987622 233332 13999999999944333
No 48
>1ucv_A Ephrin type-A receptor 8; receptor oligomerization, developmental regulation, tyrosine kinase, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: a.60.1.2
Probab=23.55 E-value=1.2e+02 Score=23.80 Aligned_cols=29 Identities=24% Similarity=0.487 Sum_probs=20.8
Q ss_pred CCcHHHHcCCChHHHHHhcCC---chhHHHHHH
Q psy4725 192 FPSIDALARPAVEAKLRQLGF---GYRAKFIQK 221 (457)
Q Consensus 192 FPTpe~LA~~~~Ee~LR~~g~---gYRAkyI~~ 221 (457)
|-+.+.|.... +++|+.+|+ |.|.+.+..
T Consensus 31 ~d~~~~l~~lt-~~DL~~lGI~~~GhrkkIl~a 62 (81)
T 1ucv_A 31 YSSLGMVLRMN-AQDVRALGITLMGHQKKILGS 62 (81)
T ss_dssp CCBHHHHTTCC-HHHHHHHTCCCHHHHHHHHHH
T ss_pred CChHHHHHHcC-HHHHHhCCCCChhHHHHHHHH
Confidence 34578888874 678999998 467665543
No 49
>3b4s_A Protein LUXT; APC91483.1, LUXT domain, structural genomics, PSI-2, protein structure initiative; 3.10A {Vibrio parahaemolyticus rimd 2210633}
Probab=23.00 E-value=1.7e+02 Score=24.40 Aligned_cols=59 Identities=19% Similarity=0.319 Sum_probs=41.9
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHhc--cChhHHHhhhhhCCccccCCCHHHHHHHHHHhccccHHHHHHHHHHHHH
Q psy4725 82 VETMLKEYFRLDENLPELYAEWSN--RDAFFRQTCGDFVGIRMLNQDLTENIFSFLCSSNNNIARISGMIDKMCK 154 (457)
Q Consensus 82 ~~~~lr~YFdLD~DL~~l~~~~~~--~Dp~L~~li~~~~GLRILrqDPfE~LIsfIcSQNnnI~rI~~mi~rL~~ 154 (457)
+-..+.+.+|++-+.+++...|.+ +||.+..+++- +++-||+..++-..+.+.+.+|.+
T Consensus 7 i~~lfie~LDFs~~~~af~~SW~~Al~~~eF~aIlrL--------------~F~hi~~~~~~~~f~~~~i~~l~~ 67 (94)
T 3b4s_A 7 IFKMFIEHLEFEKGLDAFSQSWIKALEDSEFLAILRL--------------LFHHIVTSESAHEFAANGIDRLYK 67 (94)
T ss_dssp HHHHHHTTSCCSSCHHHHHHHHHHHTTSHHHHHHHHH--------------HHHHHHHSCCHHHHHTCHHHHHHH
T ss_pred HHHHHHHHhcccCCHHHHHHHHHHHHhCHHHHHHHHH--------------HHHHHHccCCccHHHHhHHHHHHH
Confidence 456677888888889999988864 47777765443 676688777777666666666544
No 50
>4gfj_A Topoisomerase V; helix-hairpin-helix, DNA repair enzyme, DNA B isomerase; 2.91A {Methanopyrus kandleri AV19}
Probab=22.70 E-value=33 Score=36.38 Aligned_cols=77 Identities=25% Similarity=0.363 Sum_probs=0.0
Q ss_pred HHHHHHhCCcccccCCCCCCcCcccCCCCCCCCCCcccccccCCcHHHHcCCChHHHHHhcCCchh-HHHHHHHHHHHHH
Q psy4725 150 DKMCKEYGTLICTLDSDGNLVGDCEKGRSHAKSCPAVTKFFAFPSIDALARPAVEAKLRQLGFGYR-AKFIQKSAEYIIQ 228 (457)
Q Consensus 150 ~rL~~~yGe~l~~~~g~~~~~~~~~~~r~~~~~~p~~~~~ysFPTpe~LA~~~~Ee~LR~~g~gYR-AkyI~~~A~~~~e 228 (457)
..|.++|| +..++..+ +.++||.|||+-| ..-|..+-+.+.+
T Consensus 532 ~elkr~yg------------------------------------s~savr~~-pv~elrelg~sd~~ia~ikgip~~~~~ 574 (685)
T 4gfj_A 532 DELKRKYG------------------------------------SASAVRRL-PVEELRELGFSDDEIAEIKGIPKKLRE 574 (685)
T ss_dssp HHHHHHSS------------------------------------CHHHHHHS-CHHHHHTTSCCHHHHHHHHTCCHHHHH
T ss_pred HHHHHhhc------------------------------------cHHHHHhc-cHHHHHHcCCchhhHHHhcCCcHHHHh
Q ss_pred cCCC------------------------CcchhhcCCC------HHHHHHHhhcCCCccccCCCccc
Q psy4725 229 GGGE------------------------SWLERLGGKS------YEEAREELQRLPGIGAKVGDGVF 265 (457)
Q Consensus 229 ~~G~------------------------~~l~~l~~~~------~~eare~L~~LpGVGpK~a~~vl 265 (457)
|- ..|..++... -.-+.+.|+.++||||+.|+-++
T Consensus 575 --~~~~e~a~~l~er~~~~~~~~~~~~~~~l~~~g~~~~~~~eik~p~~k~ll~~~gv~p~la~r~~ 639 (685)
T 4gfj_A 575 --AFDLETAAELYERYGSLKEIGRRLSYDDLLELGATPKAAAEIKGPEFKFLLNIEGVGPKLAERIL 639 (685)
T ss_dssp --HSCHHHHHHHHHHHSSSTGGGGSCGGGCCSSSCCGGGC---------------------------
T ss_pred --hcCHHHHHHHHHHhccHHHHhhcCCHHHHhccCCCHHHHHHhcChhHHHhhcccCCCHHHHHHHH
No 51
>1z3e_B DNA-directed RNA polymerase alpha chain; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: a.60.3.1 PDB: 3ihq_B
Probab=22.06 E-value=54 Score=25.90 Aligned_cols=42 Identities=21% Similarity=0.382 Sum_probs=29.5
Q ss_pred HHhcCCchhHHHHHHHHHHHHHcCCCCcchhhcCCCHHHHHHHhhcCCCcccc
Q psy4725 207 LRQLGFGYRAKFIQKSAEYIIQGGGESWLERLGGKSYEEAREELQRLPGIGAK 259 (457)
Q Consensus 207 LR~~g~gYRAkyI~~~A~~~~e~~G~~~l~~l~~~~~~eare~L~~LpGVGpK 259 (457)
+.+|+++-||-.-..- .|-..+..|-..+. +.|++++|+|+|
T Consensus 11 Ie~L~LS~Ra~NcLkr-------agI~Tv~dL~~~s~----~dLlki~n~G~k 52 (73)
T 1z3e_B 11 IEELDLSVRSYNCLKR-------AGINTVQELANKTE----EDMMKVRNLGRK 52 (73)
T ss_dssp GGGSCCBHHHHHHHHH-------TTCCBHHHHHTSCH----HHHHTSTTCCHH
T ss_pred HHHhCCCHHHHHHHHH-------cCCCcHHHHHcCCH----HHHHHcCCCCHH
Confidence 5567888887544332 25556667766764 679999999999
No 52
>3c1y_A DNA integrity scanning protein DISA; DNA damage, DNA repair, DNA-binding, DNA binding protein; HET: DNA 2BA; 2.10A {Thermotoga maritima} PDB: 3c1z_A* 3c21_A* 3c23_A*
Probab=21.85 E-value=1e+02 Score=31.52 Aligned_cols=38 Identities=24% Similarity=0.479 Sum_probs=31.0
Q ss_pred ccCCcHHHHcCCChHHHHHhc-CCc-hhHHHHHHHHHHHHH
Q psy4725 190 FAFPSIDALARPAVEAKLRQL-GFG-YRAKFIQKSAEYIIQ 228 (457)
Q Consensus 190 ysFPTpe~LA~~~~Ee~LR~~-g~g-YRAkyI~~~A~~~~e 228 (457)
-.|-|++.|.+++ .++|.+. |+| .||+.|.+....+..
T Consensus 333 ~~FGsLq~Il~AS-~eEL~~VeGIGe~rAr~IregL~r~~~ 372 (377)
T 3c1y_A 333 RMFKTLDQISKAS-VEDLKKVEGIGEKRARAISESISSLKH 372 (377)
T ss_dssp HHHCSHHHHTTCC-HHHHTTSTTCCHHHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHhCC-HHHHHhccCccHHHHHHHHHHHHHHhc
Confidence 4688999999986 5678775 999 589999999888764
No 53
>1s5l_U Photosystem II 12 kDa extrinsic protein; photosynthesis, oxygen-evolving, tetra- manganese, membrane; HET: CL1 PHO HEM PL9 LMT BCR; 3.50A {Thermosynechococcus elongatus}
Probab=21.18 E-value=28 Score=30.99 Aligned_cols=12 Identities=8% Similarity=0.182 Sum_probs=11.0
Q ss_pred HHhhcCCCcccc
Q psy4725 248 EELQRLPGIGAK 259 (457)
Q Consensus 248 e~L~~LpGVGpK 259 (457)
++|++||||||+
T Consensus 63 ~eL~~LpGiGp~ 74 (134)
T 1s5l_U 63 AAFIQYRGLYPT 74 (134)
T ss_dssp GGGGGSTTCTHH
T ss_pred HHHHHCCCCCHH
Confidence 578999999999
Done!