RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4725
(457 letters)
>d2noha2 d.129.1.2 (A:12-135) 8-oxoguanine glycosylase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 124
Score = 95.8 bits (238), Expect = 2e-24
Identities = 40/117 (34%), Positives = 58/117 (49%), Gaps = 10/117 (8%)
Query: 13 KILCPAIELSLTLTLLGGQSFRWKQLTSDEKKLGNRFQGVFKECVWTLWADPSYLHYQVF 72
I CP EL L L L GQSFRW++ + + GV + VWTL LH V+
Sbjct: 14 SIPCPRSELRLDLVLPSGQSFRWREQSP------AHWSGVLADQVWTLTQTEEQLHCTVY 67
Query: 73 SQHKLNANS----VETMLKEYFRLDENLPELYAEWSNRDAFFRQTCGDFVGIRMLNQ 125
K A+ +++YF+LD L +LY W + D+ F++ F G+R+L Q
Sbjct: 68 RGDKSQASRPTPDELEAVRKYFQLDVTLAQLYHHWGSVDSHFQEVAQKFQGVRLLRQ 124
Score = 53.0 bits (127), Expect = 2e-09
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Query: 263 GVFKEHVWTLWADPSYLHYQVYSQHKLNTNS----VETMLKEYFRLDENLPELYAEWSNR 318
GV + VWTL LH VY K + +++YF+LD L +LY W +
Sbjct: 46 GVLADQVWTLTQTEEQLHCTVYRGDKSQASRPTPDELEAVRKYFQLDVTLAQLYHHWGSV 105
Query: 319 DAFFRQ 324
D+ F++
Sbjct: 106 DSHFQE 111
>d2noha1 a.96.1.3 (A:136-325) 8-oxoguanine glycosylase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 190
Score = 83.7 bits (206), Expect = 2e-19
Identities = 37/79 (46%), Positives = 50/79 (63%), Gaps = 2/79 (2%)
Query: 327 GDFVADCICLMSLSHLQAVPVDTHVYQIACNHYHFQKSTS--KTLTPAVYNQIRAFFADK 384
G VADCICLM+L QAVPVD H++ IA Y + +TS K +P ++ FF
Sbjct: 112 GTQVADCICLMALDKPQAVPVDVHMWHIAQRDYSWHPTTSQAKGPSPQTNKELGNFFRSL 171
Query: 385 FGKYAGWAHSILFCADLKK 403
+G YAGWA ++LF ADL++
Sbjct: 172 WGPYAGWAAAVLFSADLRQ 190
Score = 74.4 bits (182), Expect = 3e-16
Identities = 59/140 (42%), Positives = 84/140 (60%), Gaps = 22/140 (15%)
Query: 126 DLTENIFSFLCSSNNNIARISGMIDKMCKEYGTLICTLDSDGNLVGDCEKGRSHAKSCPA 185
D E +FSF+CSSNNNIARI+GM++++C+ +G + LD
Sbjct: 1 DPIECLFSFICSSNNNIARITGMVERLCQAFGPRLIQLDD-------------------- 40
Query: 186 VTKFFAFPSIDALARPAVEAKLRQLGFGYRAKFIQKSAEYII-QGGGESWLERLGGKSYE 244
+ FPS+ ALA P VEA LR+LG GYRA+++ SA I+ + GG +WL++L SYE
Sbjct: 41 -VTYHGFPSLQALAGPEVEAHLRKLGLGYRARYVSASARAILEEQGGLAWLQQLRESSYE 99
Query: 245 EAREELQRLPGIGAKVGDGV 264
EA + L LPG+G +V D +
Sbjct: 100 EAHKALCILPGVGTQVADCI 119
>d2q80a1 a.128.1.1 (A:6-296) Geranylgeranyl pyrophosphate synthetase
{Human (Homo sapiens) [TaxId: 9606]}
Length = 291
Score = 27.0 bits (58), Expect = 4.5
Identities = 19/211 (9%), Positives = 55/211 (26%), Gaps = 5/211 (2%)
Query: 53 FKECVWTLWADPSYLHYQVFSQHKLNANSVETMLKEYFRLDENLPELYAEWS--NRDAFF 110
+++ PS ++ + + + +L + +
Sbjct: 70 GFPVAHSIYGIPSVINSANYVYFLGLEKVLTLDHPDAVKLFTRQLLELHQGQGLDIYWRD 129
Query: 111 RQTCGDFVGIRMLNQDLTENIFSFLCSSNNNIARISGMIDKMCKEYGTLICTLDSDGNLV 170
TC + + T +F + + + G + D +
Sbjct: 130 NYTCPTEEEYKAMVLQKTGGLFGLAVGLMQLFSDYKEDLKPLLNTLGL-FFQIRDDYANL 188
Query: 171 GDCEKGRSHAKSCPAVTKFFAFPSIDALARPAVEAKLRQL--GFGYRAKFIQKSAEYIIQ 228
E + + F+FP+I A+ +++ + + Y+
Sbjct: 189 HSKEYSENKSFCEDLTEGKFSFPTIHAIWSRPESTQVQNILRQRTENIDIKKYCVHYLED 248
Query: 229 GGGESWLERLGGKSYEEAREELQRLPGIGAK 259
G + + +A +++ G
Sbjct: 249 VGSFEYTRNTLKELEAKAYKQIDARGGNPEL 279
>d1vdda_ e.49.1.1 (A:) Recombination protein RecR {Deinococcus
radiodurans [TaxId: 1299]}
Length = 199
Score = 26.8 bits (59), Expect = 5.1
Identities = 10/19 (52%), Positives = 10/19 (52%)
Query: 241 KSYEEAREELQRLPGIGAK 259
S EL RLPGIG K
Sbjct: 5 PSLVSLIRELSRLPGIGPK 23
>d3bzka1 a.60.2.6 (A:474-563) Transcriptional accessory factor Tex
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 90
Score = 25.4 bits (56), Expect = 5.7
Identities = 12/60 (20%), Positives = 22/60 (36%), Gaps = 15/60 (25%)
Query: 202 AVEAKLRQL-GFGYRAKFIQKSAEYIIQGGGESWLERLGGKSYEEAREELQRLPGIGAKV 260
A A L ++ G A+ I+ + G R+EL+++ +G K
Sbjct: 32 ASAALLARISGLNSTL------AQNIVA-----HRDANGAFR---TRDELKKVSRLGEKT 77
>d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS)
{Methanococcus maripaludis [TaxId: 39152]}
Length = 434
Score = 26.8 bits (58), Expect = 6.8
Identities = 20/179 (11%), Positives = 38/179 (21%), Gaps = 16/179 (8%)
Query: 149 IDKMCKEYGTLICTLDSDGNLVGDCEKGRSHAKSCPA------VTKFFAFPSIDAL---- 198
I K+C+ Y + + A K P L
Sbjct: 233 IAKICENYDIPHIINGAYAIQNNYYLEKLKKAFKYRVDAVVSSSDKNLLTPIGGGLVYST 292
Query: 199 ---ARPAVEAKLRQLGFGYRAKFIQKSAEYIIQGGGESWLERLGGKSYEEAREELQRLPG 255
+ S + ++ S + E L L
Sbjct: 293 DAEFIKEISLSYPGRASATPVVNTLVSLLSMGSKNYLELVKNQ-KNSKKLLDELLNDLSK 351
Query: 256 I-GAKVGDG-VFKEHVWTLWADPSYLHYQVYSQHKLNTNSVETMLKEYFRLDENLPELY 312
G K D ++ +DP + ++Y+ ++ Y
Sbjct: 352 KTGGKFLDVESPIASCISVNSDPVEIAAKLYNLRVTGPRGIKKTDHFGNCYLGTYTHDY 410
>d1qz9a_ c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescens [TaxId:
294]}
Length = 404
Score = 26.2 bits (56), Expect = 8.4
Identities = 21/139 (15%), Positives = 32/139 (23%), Gaps = 13/139 (9%)
Query: 223 AEYIIQGGGESWLERLGGKSYEEAREELQRLPGIGAKVGDGVFKEHVWTLWADPSYLHYQ 282
AE G SW E L L IGA+ G+ V + +
Sbjct: 52 AEEWGNGLIRSWNSAGWRDLSERLGNRLATL--IGARDGEVVVTDTTSINLFKVLSAALR 109
Query: 283 VYSQHKLNTNSVETMLKEYFRLDENLPELYAEWSNRDAFFRQTCGDFVADCICLMSLSHL 342
V + + T + +
Sbjct: 110 VQATRSPERRVIVTE-----------TSNFPTDLYIAEGLADMLQQGYTLRLVDSPEELP 158
Query: 343 QAVPVDTHVYQIACNHYHF 361
QA+ DT V + +Y
Sbjct: 159 QAIDQDTAVVMLTHVNYKT 177
>d1mwva2 a.93.1.3 (A:441-748) Catalase-peroxidase KatG {Burkholderia
pseudomallei [TaxId: 28450]}
Length = 308
Score = 26.2 bits (57), Expect = 9.0
Identities = 19/92 (20%), Positives = 30/92 (32%), Gaps = 14/92 (15%)
Query: 34 RWKQLTSDEKKLGNRF--QGVFKECVWTLWADPSYLHYQVFS---QHKLNANSVETMLKE 88
R T+ E+ L N F + W A + + + K V+ +
Sbjct: 209 RHGVFTAREQALTNDFFVNLLDMGTEWKPTAADADVFEGRDRATGELKWTGTRVDLVFGS 268
Query: 89 --YFRLDENLPELYAEWSNRDAFFRQTCGDFV 118
R L E+Y ++ F R DFV
Sbjct: 269 HSQLR---ALAEVYGSADAQEKFVR----DFV 293
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.135 0.417
Gapped
Lambda K H
0.267 0.0692 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,777,175
Number of extensions: 85942
Number of successful extensions: 282
Number of sequences better than 10.0: 1
Number of HSP's gapped: 277
Number of HSP's successfully gapped: 14
Length of query: 457
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 369
Effective length of database: 1,199,356
Effective search space: 442562364
Effective search space used: 442562364
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.7 bits)