Query psy4727
Match_columns 253
No_of_seqs 109 out of 410
Neff 6.3
Searched_HMMs 46136
Date Sat Aug 17 00:19:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4727.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4727hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3827|consensus 100.0 2.4E-85 5.2E-90 603.6 23.9 232 9-241 115-347 (400)
2 PF01007 IRK: Inward rectifier 100.0 2.1E-80 4.5E-85 574.8 27.9 232 13-246 91-323 (336)
3 PF07885 Ion_trans_2: Ion chan 97.6 5.7E-05 1.2E-09 55.7 3.1 52 9-62 24-79 (79)
4 KOG3713|consensus 97.5 9.8E-05 2.1E-09 71.6 3.7 50 15-66 387-436 (477)
5 KOG1419|consensus 94.4 0.034 7.5E-07 55.1 3.3 40 15-56 279-318 (654)
6 KOG1545|consensus 94.4 0.0046 1E-07 58.5 -2.6 48 15-64 403-450 (507)
7 PLN03192 Voltage-dependent pot 93.8 0.054 1.2E-06 56.3 3.7 48 15-64 260-307 (823)
8 PRK10537 voltage-gated potassi 93.2 0.13 2.8E-06 49.4 4.9 46 9-56 168-217 (393)
9 KOG4390|consensus 88.6 0.026 5.6E-07 54.1 -4.7 48 15-64 366-413 (632)
10 KOG1418|consensus 88.3 0.61 1.3E-05 43.2 4.2 38 13-52 122-160 (433)
11 KOG0498|consensus 87.7 0.56 1.2E-05 48.4 3.9 50 15-66 304-353 (727)
12 TIGR02588 conserved hypothetic 85.1 19 0.00041 29.2 13.3 65 44-109 10-75 (122)
13 KOG3684|consensus 84.5 1 2.2E-05 44.1 3.5 45 13-59 295-339 (489)
14 KOG4404|consensus 78.2 1.9 4.2E-05 40.4 3.0 30 15-46 90-119 (350)
15 KOG1420|consensus 57.1 9.7 0.00021 38.8 3.0 39 14-54 297-335 (1103)
16 KOG0501|consensus 55.9 16 0.00035 37.3 4.3 40 15-56 433-472 (971)
17 KOG1418|consensus 53.7 11 0.00024 34.7 2.8 40 13-53 249-296 (433)
18 KOG4404|consensus 50.6 22 0.00048 33.6 4.1 61 2-62 179-249 (350)
19 KOG0500|consensus 47.0 15 0.00033 36.4 2.6 39 15-56 193-231 (536)
20 PF11301 DUF3103: Protein of u 37.8 31 0.00067 32.7 3.0 49 166-214 198-261 (350)
21 PF11623 DUF3252: Protein of u 36.0 28 0.00061 24.0 1.8 37 141-177 2-38 (53)
22 PF12112 DUF3579: Protein of u 36.0 30 0.00066 26.7 2.2 29 58-90 34-62 (92)
23 KOG3193|consensus 31.5 42 0.0009 34.2 2.9 14 15-28 227-240 (1087)
24 PF05545 FixQ: Cbb3-type cytoc 26.8 1.8E+02 0.0039 19.1 4.6 32 34-66 4-35 (49)
25 PF06200 tify: tify domain; I 26.4 32 0.0007 21.9 0.8 20 15-34 5-25 (36)
26 PF08285 DPM3: Dolichol-phosph 20.4 46 0.001 25.5 0.7 24 17-41 53-76 (91)
No 1
>KOG3827|consensus
Probab=100.00 E-value=2.4e-85 Score=603.64 Aligned_cols=232 Identities=60% Similarity=1.022 Sum_probs=227.0
Q ss_pred Cccccc-cceeeeecCcCccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCcceEEeccceEEeeeCCEEEE
Q psy4727 9 SPIDMS-NNSILNSYGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKLSRPKKRTQTLLFSRNAVICQRDGELCL 87 (253)
Q Consensus 9 ~~~~~~-~t~tTIGYG~~~p~~~c~~~~~l~~~q~~~G~l~~a~~~GlvfaKfSrP~~r~~tI~FS~~AVI~~~dG~~~L 87 (253)
|+|=.| +||||||||.|+++++||.|++++.+|+++|++++|||+|++|||++||++||+||+||++|||+.|||++||
T Consensus 115 sAFLFSiETQtTIGYG~R~vTeeCP~aI~ll~~Q~I~g~ii~afm~G~i~aKiarPkKRAeTl~FS~~AVI~~RDGkLCL 194 (400)
T KOG3827|consen 115 SAFLFSIETQTTIGYGFRYVTEECPEAIFLLVLQSILGVIINAFMVGAIFAKIARPKKRAETLIFSDHAVIALRDGKLCL 194 (400)
T ss_pred hhheeeeeeeeeeeccccccCccChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhheeeeccceEEEeeCCceEE
Confidence 344478 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeeCCcCeEEEEEEEEEEEEEeeeCCCeEEeeEEeeeeeecCCCCceeeeecceEEEEEcCCCCCCCCCCHhhhccC
Q psy4727 88 MFRVGDMRRSHIIEAHVRAQLIRKKVTLEGELLPFYQQELKVGGDGIEDKIFFIWPTTIVHKINPMSPLYTLSAADMLRE 167 (253)
Q Consensus 88 mfRv~N~r~~~liea~vr~~l~~~~~t~eGe~~~~~~~~l~l~~d~~~~~~~l~~p~tv~H~IDe~SPL~~~t~~~L~~~ 167 (253)
||||||+|+++|++|+||+.|++.++|+|||.++++|.+++++.|.+.+++||.||.|++|+|||+||||++++++|.++
T Consensus 195 mfRVgdlRkShliea~Vraqlik~~~T~EGE~ipl~q~di~vg~d~g~d~~Flv~Plti~H~IDe~SPLy~l~~~~l~~~ 274 (400)
T KOG3827|consen 195 MFRVGDLRKSHLIEAHVRAQLIKTRVTKEGEVIPLHQTDIDVGFDTGSDRLFLVWPLTIYHVIDETSPLYDLSRQDLAKA 274 (400)
T ss_pred EEEecCccccceeeEEEEEEEEEEcccCCcceeecceEEeecccCCCcCceEEEeceEEEEEcCCCCchhhhChhhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEEEEEeccccceEEEEEeeeCCceecCCeeeeeeeeecCCCeEEEecCCCCceeeecCCCCChHhHHH
Q psy4727 168 RFEIVVILEGVIESTGMTTQARSSYLPNEILWGHRFETLVSFKKETGEHEVNYGLFNNTYEVHTPLCSAQALDQ 241 (253)
Q Consensus 168 ~~EiiV~l~G~de~t~~tv~aR~SY~~~eI~wg~rF~~~v~~~~~~g~~~iD~~~F~~~~~~~~p~~sa~~~~~ 241 (253)
+|||+|+|+|+.|+||+|+|||+||+|+||+|||||+|+++++ ++|+|.|||++||+|++++||.|||++++|
T Consensus 275 ~FEiVViLeG~VEsTg~t~QaRTSYlp~EILWGhRF~pvv~~~-~~g~Y~VDy~~F~~T~~V~tP~csa~~l~E 347 (400)
T KOG3827|consen 275 DFEIVVILEGTVEATGMTTQARTSYLPSEILWGHRFVPVVTLE-KNGKYEVDYSNFHKTYEVPTPLCSAKELDE 347 (400)
T ss_pred ceEEEEEEEeEEecccceeecccccchHHhhhccccceeeEec-cCCcEEEEhHHcCceeeccCCCcChhhhhh
Confidence 9999999999999999999999999999999999999999965 799999999999999999999999999997
No 2
>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Inwardly-rectifying potassium channels (Kir) are the principal class of two-TM domain potassium channels. They are characterised by the property of inward-rectification, which is described as the ability to allow large inward currents and smaller outward currents. Inwardly rectifying potassium channels (Kir) are responsible for regulating diverse processes including: cellular excitability, vascular tone, heart rate, renal salt flow, and insulin release []. To date, around twenty members of this superfamily have been cloned, which can be grouped into six families by sequence similarity, and these are designated Kir1.x-6.x [, ]. Cloned Kir channel cDNAs encode proteins of between ~370-500 residues, both N- and C-termini are thought to be cytoplasmic, and the N terminus lacks a signal sequence. Kir channel alpha subunits possess only 2TM domains linked with a P-domain. Thus, Kir channels share similarity with the fifth and sixth domains, and P-domain of the other families. It is thought that four Kir subunits assemble to form a tetrameric channel complex, which may be hetero- or homomeric [].; PDB: 3AT9_A 3AUW_D 3SYA_A 3ATE_A 3SYQ_A 3SYO_A 3ATB_A 3SYC_A 3AT8_A 3ATA_A ....
Probab=100.00 E-value=2.1e-80 Score=574.82 Aligned_cols=232 Identities=52% Similarity=0.855 Sum_probs=210.1
Q ss_pred cc-cceeeeecCcCccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCcceEEeccceEEeeeCCEEEEEEEE
Q psy4727 13 MS-NNSILNSYGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKLSRPKKRTQTLLFSRNAVICQRDGELCLMFRV 91 (253)
Q Consensus 13 ~~-~t~tTIGYG~~~p~~~c~~~~~l~~~q~~~G~l~~a~~~GlvfaKfSrP~~r~~tI~FS~~AVI~~~dG~~~LmfRv 91 (253)
.| +||||||||.++|+++||+|++++++|+++|++++|+++|++|||||||++|++||+||++|||+++||++||||||
T Consensus 91 FSveT~tTIGYG~~~~~~~c~~a~~l~~~q~~~g~l~~a~~~Glvfar~srP~~R~~tI~FS~~AVI~~~dG~~~LmfRv 170 (336)
T PF01007_consen 91 FSVETQTTIGYGSRYPTPECPYAIFLVTIQSLVGLLLDAFMTGLVFARFSRPKKRASTILFSKKAVIAPRDGKLCLMFRV 170 (336)
T ss_dssp HHHHHHTT---SSSEB-CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCGGGSEEE-SSEEEEEETTEEEEEEEE
T ss_pred EEEEEEEEeccCCcccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccceEEEEeeeEEeecCCeeEEEEEe
Confidence 78 99999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCcCeEEEEEEEEEEEEEeeeCCCeEEeeEEeeeeeecCCCCceeeeecceEEEEEcCCCCCCCCCCHhhhccCCeEE
Q psy4727 92 GDMRRSHIIEAHVRAQLIRKKVTLEGELLPFYQQELKVGGDGIEDKIFFIWPTTIVHKINPMSPLYTLSAADMLRERFEI 171 (253)
Q Consensus 92 ~N~r~~~liea~vr~~l~~~~~t~eGe~~~~~~~~l~l~~d~~~~~~~l~~p~tv~H~IDe~SPL~~~t~~~L~~~~~Ei 171 (253)
+|+|+++|+||+||++|++.+.++|||.+++++.+|++.++.+.+.++|.+||||+|+|||+||||++++++|+++++||
T Consensus 171 ~n~R~~~liea~Vr~~l~~~~~t~eGe~~~~~~~~L~l~~~~~~~~~~L~~p~tV~H~IDe~SPLy~~t~~~L~~~~~Ei 250 (336)
T PF01007_consen 171 ANLRKNQLIEAHVRLYLIRDRVTKEGERIRLRQQDLPLERDQGEDRPFLILPWTVVHVIDEDSPLYGLTPEDLAQADFEI 250 (336)
T ss_dssp EESSSSSEEEEEEEEEEEEEEE-TTS-EEEEEEEEEGSSTTTTTTBEEESSEEEEEEE-STTSTTTT--HHHHHCTTEEE
T ss_pred cCCCcCeeecceEEEEEEEeeecCCCceEEeeccccccccCCCCCceeeeCCEEEEEeCCCCCcchhhccchhccCcEEE
Confidence 99999999999999999999999999999889999999998777899999999999999999999999999999999999
Q ss_pred EEEEEEEeccccceEEEEEeeeCCceecCCeeeeeeeeecCCCeEEEecCCCCceeeecCCCCChHhHHHHHhhc
Q psy4727 172 VVILEGVIESTGMTTQARSSYLPNEILWGHRFETLVSFKKETGEHEVNYGLFNNTYEVHTPLCSAQALDQLLAIH 246 (253)
Q Consensus 172 iV~l~G~de~t~~tv~aR~SY~~~eI~wg~rF~~~v~~~~~~g~~~iD~~~F~~~~~~~~p~~sa~~~~~~~~~~ 246 (253)
+|+++|+||+|||++|||+||.++||+|||||+||+.. ++|+|.|||++||+++|+++|.|||+|+++..+..
T Consensus 251 vV~l~G~de~t~~~v~aR~SY~~~eI~wg~rF~~~v~~--~~g~~~VD~s~F~~t~pv~~p~~Sa~~~~~~~~~~ 323 (336)
T PF01007_consen 251 VVTLEGIDESTGQTVQARTSYLPEEILWGHRFVPMVSR--EDGRYRVDFSKFHDTVPVDTPSCSAKELDEKKQQL 323 (336)
T ss_dssp EEEEEEEETTTTEEEEEEEEEEGGGEEETEEE--SEEE--ETTEEEEEGCGTT-EEE-TS-SS-HHHHHHHHHCH
T ss_pred EEEEEEEEeecceEEEEEEEEchHHeecCCEeeeeEEe--cCCeEEEEhHHhCCceEccCCCcCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999984 79999999999999999999999999999998853
No 3
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria []. ; PDB: 1KKD_A 2A0L_A 1ORQ_C 3UKM_C 1LNQ_E 3OUS_A 3LDC_A 3LDD_A 3RBZ_A 3LDE_A ....
Probab=97.58 E-value=5.7e-05 Score=55.67 Aligned_cols=52 Identities=19% Similarity=0.332 Sum_probs=41.4
Q ss_pred Cccc---cc-cceeeeecCcCccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy4727 9 SPID---MS-NNSILNSYGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKLSR 62 (253)
Q Consensus 9 ~~~~---~~-~t~tTIGYG~~~p~~~c~~~~~l~~~q~~~G~l~~a~~~GlvfaKfSr 62 (253)
+.+| .| .|.+|||||...|. .+.+-+++.+++++|+.+.+++++.+...+.+
T Consensus 24 ~~~da~yfs~~t~tTvGyGDi~p~--t~~gr~~~~~~~~~G~~~~~~~~~~~~~~l~~ 79 (79)
T PF07885_consen 24 SFIDALYFSFVTITTVGYGDIVPQ--TPAGRIFTIIYMLIGIFLFALFLSVLASVLTQ 79 (79)
T ss_dssp SHHHHHHHHHHHHTT---SSSSTS--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHHhcccCCCccCC--ccchHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4466 66 99999999999997 46788999999999999999999998887753
No 4
>KOG3713|consensus
Probab=97.45 E-value=9.8e-05 Score=71.56 Aligned_cols=50 Identities=16% Similarity=0.180 Sum_probs=45.6
Q ss_pred cceeeeecCcCccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCC
Q psy4727 15 NNSILNSYGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKLSRPKKR 66 (253)
Q Consensus 15 ~t~tTIGYG~~~p~~~c~~~~~l~~~q~~~G~l~~a~~~GlvfaKfSrP~~r 66 (253)
.|+||||||.++|.+ ..|-+++..-++.|+|+.|+=+.++|-+|++-..+
T Consensus 387 VTMTTVGYGDm~P~T--~~Gklvas~cil~GVLvlAlPItiIv~nF~~~y~~ 436 (477)
T KOG3713|consen 387 VTMTTVGYGDMVPVT--VLGKLVASLCILCGVLVLALPITIIVNNFSMYYSE 436 (477)
T ss_pred EEEeeecccCccccc--cchHHHHHHHHHHhHHHhhcchHhHhhhHHHHHHH
Confidence 799999999999975 48899999999999999999999999999876554
No 5
>KOG1419|consensus
Probab=94.37 E-value=0.034 Score=55.10 Aligned_cols=40 Identities=20% Similarity=0.218 Sum_probs=36.0
Q ss_pred cceeeeecCcCccCCCChhHHHHHHHHHHHHHHHHHHHHHHH
Q psy4727 15 NNSILNSYGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIV 56 (253)
Q Consensus 15 ~t~tTIGYG~~~p~~~c~~~~~l~~~q~~~G~l~~a~~~Glv 56 (253)
.|.||||||..+|. ...|-+|+.+=+++|+-++|+..|++
T Consensus 279 ITltTIGYGDk~P~--TWlGr~laa~fsligiSFFALPAGIL 318 (654)
T KOG1419|consen 279 ITLTTIGYGDKTPQ--TWLGRLLAACFSLIGISFFALPAGIL 318 (654)
T ss_pred eeEEeeccCCcCcc--cchhHHHHHHHHHHHHHHHhcccccc
Confidence 69999999999986 46888999999999999999988874
No 6
>KOG1545|consensus
Probab=94.36 E-value=0.0046 Score=58.47 Aligned_cols=48 Identities=17% Similarity=0.155 Sum_probs=40.4
Q ss_pred cceeeeecCcCccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q psy4727 15 NNSILNSYGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKLSRPK 64 (253)
Q Consensus 15 ~t~tTIGYG~~~p~~~c~~~~~l~~~q~~~G~l~~a~~~GlvfaKfSrP~ 64 (253)
.|+||||||.|+|. .+.|-++-.+-++.|+|.-|+-+-++.+.|.-=.
T Consensus 403 VTMTTVGYGDm~P~--TvgGKIVGslCAiaGVLTiALPVPVIVsNFnyFY 450 (507)
T KOG1545|consen 403 VTMTTVGYGDMVPV--TVGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFY 450 (507)
T ss_pred EEEEeeccccceec--ccCceehhhHHhhhhheEecccccEEEeccccee
Confidence 89999999999997 4688899999999999998887777776665433
No 7
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=93.83 E-value=0.054 Score=56.33 Aligned_cols=48 Identities=8% Similarity=0.216 Sum_probs=39.6
Q ss_pred cceeeeecCcCccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q psy4727 15 NNSILNSYGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKLSRPK 64 (253)
Q Consensus 15 ~t~tTIGYG~~~p~~~c~~~~~l~~~q~~~G~l~~a~~~GlvfaKfSrP~ 64 (253)
+|+||||||..+|.+ +...+++++=+++|+.+.|+++|.+-.=+..-.
T Consensus 260 ~TmtTVGYGDi~p~t--~~E~i~~i~~ml~g~~~~a~~ig~i~~li~~~~ 307 (823)
T PLN03192 260 TTMTTVGYGDLHAVN--TIEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGT 307 (823)
T ss_pred HHHhhccCCCcCCCc--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999874 477888888899999999999998766544433
No 8
>PRK10537 voltage-gated potassium channel; Provisional
Probab=93.25 E-value=0.13 Score=49.41 Aligned_cols=46 Identities=17% Similarity=0.130 Sum_probs=36.2
Q ss_pred Cccc---cc-cceeeeecCcCccCCCChhHHHHHHHHHHHHHHHHHHHHHHH
Q psy4727 9 SPID---MS-NNSILNSYGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIV 56 (253)
Q Consensus 9 ~~~~---~~-~t~tTIGYG~~~p~~~c~~~~~l~~~q~~~G~l~~a~~~Glv 56 (253)
|.+| .| .|.||+|||...|.+ +.+-++.++-.+.|+.+.+..++.+
T Consensus 168 s~~dA~y~svvt~tTvGyGdi~p~t--~~grl~~i~~ii~Gi~vf~~~is~i 217 (393)
T PRK10537 168 SLSTAFYFSIVTMSTVGYGDIVPVS--ESARLFTISVIILGITVFATSISAI 217 (393)
T ss_pred CHHHHHHhhheeeecccCCCCCCCC--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566 66 999999999998875 4777888888889998887766543
No 9
>KOG4390|consensus
Probab=88.58 E-value=0.026 Score=54.05 Aligned_cols=48 Identities=19% Similarity=0.219 Sum_probs=41.7
Q ss_pred cceeeeecCcCccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q psy4727 15 NNSILNSYGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKLSRPK 64 (253)
Q Consensus 15 ~t~tTIGYG~~~p~~~c~~~~~l~~~q~~~G~l~~a~~~GlvfaKfSrP~ 64 (253)
.|+||.|||.|-|++ -.|-++-.+-++.|+++-|+-+-++...|||-.
T Consensus 366 VTmTTLGYGDMVp~T--IaGKIfGsiCSLSGVLVIALPVPvIVSNFSRIY 413 (632)
T KOG4390|consen 366 VTMTTLGYGDMVPST--IAGKIFGSICSLSGVLVIALPVPVIVSNFSRIY 413 (632)
T ss_pred eeeeeccccccchHH--HHHHHhhhhhcccceEEEeccccEEEechhHHH
Confidence 799999999999875 367799999999999999999988888888753
No 10
>KOG1418|consensus
Probab=88.33 E-value=0.61 Score=43.16 Aligned_cols=38 Identities=16% Similarity=0.257 Sum_probs=28.1
Q ss_pred cc-cceeeeecCcCccCCCChhHHHHHHHHHHHHHHHHHHH
Q psy4727 13 MS-NNSILNSYGAKQVTEECPEAIFILCLQSIVGVMIQAFM 52 (253)
Q Consensus 13 ~~-~t~tTIGYG~~~p~~~c~~~~~l~~~q~~~G~l~~a~~ 52 (253)
-| ++.||||||..+|.++ .|=+.+++=+++|+=+..++
T Consensus 122 fs~tv~TTIGYG~i~P~T~--~Gr~~~i~YaliGIPl~li~ 160 (433)
T KOG1418|consen 122 FSITVITTIGYGNIAPRTD--AGRLFTILYALVGIPLMLLI 160 (433)
T ss_pred hhhheeeeccCCcccCCcC--cchhHHHHHHHHhhHHHHHH
Confidence 45 8999999999999765 55677777777777555444
No 11
>KOG0498|consensus
Probab=87.74 E-value=0.56 Score=48.41 Aligned_cols=50 Identities=16% Similarity=0.262 Sum_probs=41.5
Q ss_pred cceeeeecCcCccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCC
Q psy4727 15 NNSILNSYGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKLSRPKKR 66 (253)
Q Consensus 15 ~t~tTIGYG~~~p~~~c~~~~~l~~~q~~~G~l~~a~~~GlvfaKfSrP~~r 66 (253)
+|.+|+|||..+++.. .=.+..++=+++|+++.|.++|-+=+=+.+-..|
T Consensus 304 ~tLstvG~g~~~s~~~--~E~iFsi~~mi~GllL~A~lIGNmt~~iqs~tsR 353 (727)
T KOG0498|consen 304 STLSTVGYGLVHANNM--GEKIFSIFIMLFGLLLFAYLIGNMTALLQSLTSR 353 (727)
T ss_pred hHhhhccCCccCCCCc--HHHHHHHHHHHHhHHHHHHHHhhHHHhHHHHhHH
Confidence 7899999999988754 4468888899999999999999987766665554
No 12
>TIGR02588 conserved hypothetical protein TIGR02588. The function of this protein is unknown. It is always found as part of a two-gene operon with TIGR02587, a protein that appears to span the membrane seven times. It is found in Nostoc sp. PCC 7120, Agrobacterium tumefaciens, Sinorhizobium meliloti, and Gloeobacter violaceus, so far, all of which are bacterial.
Probab=85.15 E-value=19 Score=29.25 Aligned_cols=65 Identities=18% Similarity=0.309 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHH-HHHHhcCCcCCcceEEeccceEEeeeCCEEEEEEEEeeCCcCeEEEEEEEEEEE
Q psy4727 44 VGVMIQAFMVGI-VFAKLSRPKKRTQTLLFSRNAVICQRDGELCLMFRVGDMRRSHIIEAHVRAQLI 109 (253)
Q Consensus 44 ~G~l~~a~~~Gl-vfaKfSrP~~r~~tI~FS~~AVI~~~dG~~~LmfRv~N~r~~~liea~vr~~l~ 109 (253)
+++++.+.++|+ +|..++...+.+. +.=+..-+++..+|+.+..|+|.|.-...--.++|+..|-
T Consensus 10 Is~~ill~viglv~y~~l~~~~~pp~-l~v~~~~~~r~~~gqyyVpF~V~N~gg~TAasV~V~geL~ 75 (122)
T TIGR02588 10 ISTLILAAMFGLVAYDWLRYSNKAAV-LEVAPAEVERMQTGQYYVPFAIHNLGGTTAAAVNIRGELR 75 (122)
T ss_pred HHHHHHHHHHHHHHHHhhccCCCCCe-EEEeehheeEEeCCEEEEEEEEEeCCCcEEEEEEEEEEEc
Confidence 444555555555 4567776665543 4444445678899999999999999987777777777664
No 13
>KOG3684|consensus
Probab=84.46 E-value=1 Score=44.06 Aligned_cols=45 Identities=20% Similarity=0.291 Sum_probs=32.4
Q ss_pred cccceeeeecCcCccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4727 13 MSNNSILNSYGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAK 59 (253)
Q Consensus 13 ~~~t~tTIGYG~~~p~~~c~~~~~l~~~q~~~G~l~~a~~~GlvfaK 59 (253)
.+.|+.+||||.+.|.+-|.- .++.+-.++|....|+++.++=-|
T Consensus 295 i~iTFlsiGYGDiVP~TycGr--~v~l~tGivGa~~sallvAvisRK 339 (489)
T KOG3684|consen 295 IAITFLSIGYGDIVPNTYCGR--GVALLTGIVGAGCSSLLVAVIARK 339 (489)
T ss_pred HHHHHhhcccCcccCCccccc--hHHHHhhhhhhhHHHHHHHHHHHH
Confidence 347999999999999999874 455555677766666666555444
No 14
>KOG4404|consensus
Probab=78.25 E-value=1.9 Score=40.44 Aligned_cols=30 Identities=13% Similarity=0.217 Sum_probs=21.6
Q ss_pred cceeeeecCcCccCCCChhHHHHHHHHHHHHH
Q psy4727 15 NNSILNSYGAKQVTEECPEAIFILCLQSIVGV 46 (253)
Q Consensus 15 ~t~tTIGYG~~~p~~~c~~~~~l~~~q~~~G~ 46 (253)
+--||||||...|.++ .|-+.+++=+++|+
T Consensus 90 TVItTIGyGhstP~T~--~GK~Fcm~Yal~Gi 119 (350)
T KOG4404|consen 90 TVITTIGYGHSTPSTD--GGKAFCMFYALVGI 119 (350)
T ss_pred EEEeeeccCCCCCCCc--CceehhhhHHHhcC
Confidence 4468999999999887 44555555566554
No 15
>KOG1420|consensus
Probab=57.07 E-value=9.7 Score=38.75 Aligned_cols=39 Identities=13% Similarity=0.083 Sum_probs=27.8
Q ss_pred ccceeeeecCcCccCCCChhHHHHHHHHHHHHHHHHHHHHH
Q psy4727 14 SNNSILNSYGAKQVTEECPEAIFILCLQSIVGVMIQAFMVG 54 (253)
Q Consensus 14 ~~t~tTIGYG~~~p~~~c~~~~~l~~~q~~~G~l~~a~~~G 54 (253)
-.|++|||||..|-.+.| |-+...+=.+.|+-++|--+-
T Consensus 297 ~vtmstvgygdvyc~t~l--grlfmvffil~glamfasyvp 335 (1103)
T KOG1420|consen 297 MVTMSTVGYGDVYCKTTL--GRLFMVFFILGGLAMFASYVP 335 (1103)
T ss_pred EEEeeeccccceeehhhh--hHHHHHHHHHHHHHHHHhhhH
Confidence 379999999999966543 455566667778877775443
No 16
>KOG0501|consensus
Probab=55.93 E-value=16 Score=37.29 Aligned_cols=40 Identities=18% Similarity=0.216 Sum_probs=29.4
Q ss_pred cceeeeecCcCccCCCChhHHHHHHHHHHHHHHHHHHHHHHH
Q psy4727 15 NNSILNSYGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIV 56 (253)
Q Consensus 15 ~t~tTIGYG~~~p~~~c~~~~~l~~~q~~~G~l~~a~~~Glv 56 (253)
+-+||||||..+|++|- + -+..++-+++|.++-|-+.|-+
T Consensus 433 t~mttvGFGNiA~~TD~-E-KiF~v~mMii~aLLYAtIFG~v 472 (971)
T KOG0501|consen 433 TCMTTVGFGNIAPNTDN-E-KIFGVCMMIIGALLYATIFGHV 472 (971)
T ss_pred hhhhcccccccCCCccH-H-HHHHHHHHHHHHHHHHHHHhhH
Confidence 55789999999999872 2 3555556777888777777764
No 17
>KOG1418|consensus
Probab=53.72 E-value=11 Score=34.67 Aligned_cols=40 Identities=10% Similarity=0.081 Sum_probs=29.2
Q ss_pred cc-cceeeeecCcCccCCCChhHH-------HHHHHHHHHHHHHHHHHH
Q psy4727 13 MS-NNSILNSYGAKQVTEECPEAI-------FILCLQSIVGVMIQAFMV 53 (253)
Q Consensus 13 ~~-~t~tTIGYG~~~p~~~c~~~~-------~l~~~q~~~G~l~~a~~~ 53 (253)
.+ .+.||||||...|... +... ..+.+..++|+...+...
T Consensus 249 f~fisltTIG~GD~vp~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 296 (433)
T KOG1418|consen 249 FSFISLTTIGFGDIVPRTL-LGRFRREELVDPLASVWILSGLALLALVL 296 (433)
T ss_pred EEEEEeeeecCCccccCCC-cceeeccccccchhHHHHHhhhhHHHHHh
Confidence 45 8999999999998764 2222 567777788877777665
No 18
>KOG4404|consensus
Probab=50.59 E-value=22 Score=33.57 Aligned_cols=61 Identities=10% Similarity=0.195 Sum_probs=36.3
Q ss_pred ccccCCCCccc---cc-cceeeeecCcCccCCC------ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy4727 2 YGLIPSSSPID---MS-NNSILNSYGAKQVTEE------CPEAIFILCLQSIVGVMIQAFMVGIVFAKLSR 62 (253)
Q Consensus 2 ~~~~~~~~~~~---~~-~t~tTIGYG~~~p~~~------c~~~~~l~~~q~~~G~l~~a~~~GlvfaKfSr 62 (253)
|-.+-.-|.|| -- .|.||||+|..-+.++ =|.=.+...+=.++|+-..+.+.-++.-||-.
T Consensus 179 fs~~E~Wsyfds~YyCFITltTIGFGDyValQ~~~alq~qplYv~~sf~fIL~Gl~vi~a~~NllvLrf~t 249 (350)
T KOG4404|consen 179 FSSVEGWSYFDSYYYCFITLTTIGFGDYVALQQDAALQSQPLYVFFSFVFILLGLCVIYALLNLLVLRFMT 249 (350)
T ss_pred hhcccCcchhhhhheeeeeeeeccccchhhhcchhhhhCCCceehHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444456677 22 8999999999654322 11112444555667777777666666666643
No 19
>KOG0500|consensus
Probab=46.97 E-value=15 Score=36.43 Aligned_cols=39 Identities=18% Similarity=0.193 Sum_probs=29.3
Q ss_pred cceeeeecCcCccCCCChhHHHHHHHHHHHHHHHHHHHHHHH
Q psy4727 15 NNSILNSYGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIV 56 (253)
Q Consensus 15 ~t~tTIGYG~~~p~~~c~~~~~l~~~q~~~G~l~~a~~~Glv 56 (253)
=|.||||= ...|.. -.-+....++.++|++++|.++|-|
T Consensus 193 LTlTTiGe-~P~P~t--~~ey~F~I~d~LiGvliFAtIvG~V 231 (536)
T KOG0500|consen 193 LTLTTIGE-QPPPVT--SSEYAFVIVDTLIGVLIFATIVGNV 231 (536)
T ss_pred hhhhhccC-CCCCCc--CchhhHHHHHHHHHHHHHhhhhccH
Confidence 57889973 233443 3557899999999999999998753
No 20
>PF11301 DUF3103: Protein of unknown function (DUF3103); InterPro: IPR021452 This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=37.79 E-value=31 Score=32.69 Aligned_cols=49 Identities=24% Similarity=0.530 Sum_probs=37.2
Q ss_pred cCCeEEEEEEEEEeccccceE----------EEEEeeeCCc--eecC-Cee--eeeeeeecCCC
Q psy4727 166 RERFEIVVILEGVIESTGMTT----------QARSSYLPNE--ILWG-HRF--ETLVSFKKETG 214 (253)
Q Consensus 166 ~~~~EiiV~l~G~de~t~~tv----------~aR~SY~~~e--I~wg-~rF--~~~v~~~~~~g 214 (253)
...+||..+++|++++-..+. +..+.|-|+. |.|. ||| ++|+....++|
T Consensus 198 sG~AEVYAIVTGV~psRdeP~iDiVeMPYLDyd~~~YyPNQilI~W~rYRW~AADiiLME~DDg 261 (350)
T PF11301_consen 198 SGKAEVYAIVTGVDPSRDEPQIDIVEMPYLDYDKQDYYPNQILIHWQRYRWGAADIILMEQDDG 261 (350)
T ss_pred cCcceEEEEEeccCCCcCCcceeEeeccccccCCcccCCceEEEEecccccchhheEEEeecCC
Confidence 457999999999999976653 5678888888 4565 666 68887666665
No 21
>PF11623 DUF3252: Protein of unknown function (DUF3252); InterPro: IPR021659 This family of proteins has no known function. Some members are annotated as Ssl0352 however this cannot be confirmed. Currently there is no known function. ; PDB: 3C4S_B 2JZ2_A.
Probab=35.96 E-value=28 Score=24.05 Aligned_cols=37 Identities=24% Similarity=0.259 Sum_probs=19.1
Q ss_pred ecceEEEEEcCCCCCCCCCCHhhhccCCeEEEEEEEE
Q psy4727 141 IWPTTIVHKINPMSPLYTLSAADMLRERFEIVVILEG 177 (253)
Q Consensus 141 ~~p~tv~H~IDe~SPL~~~t~~~L~~~~~EiiV~l~G 177 (253)
.+|-+.+-++|++||.|+..---=+-.|--.-|+|+|
T Consensus 2 ilPG~~V~V~n~~~~Y~~y~G~VQRvsdgkaaVLFEG 38 (53)
T PF11623_consen 2 ILPGSTVRVKNPNDIYYGYEGFVQRVSDGKAAVLFEG 38 (53)
T ss_dssp --TT-EEEE--TTSTTTT-EEEEEEEETTEEEEEEEE
T ss_pred ccCCCEEEEeCCCCccchheEEEEEeeCCeEEEEecC
Confidence 4677888999999999998321001123345666666
No 22
>PF12112 DUF3579: Protein of unknown function (DUF3579); InterPro: IPR021969 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 98 to 126 amino acids in length. This protein has a conserved FRP sequence motif. ; PDB: 2L9D_A.
Probab=35.96 E-value=30 Score=26.68 Aligned_cols=29 Identities=28% Similarity=0.457 Sum_probs=17.4
Q ss_pred HHhcCCcCCcceEEeccceEEeeeCCEEEEEEE
Q psy4727 58 AKLSRPKKRTQTLLFSRNAVICQRDGELCLMFR 90 (253)
Q Consensus 58 aKfSrP~~r~~tI~FS~~AVI~~~dG~~~LmfR 90 (253)
|.| +|..| +.+|..+.....+|.+|+.+.
T Consensus 34 a~F-~~~~r---l~Ys~~~~P~~~~GvkcVvVd 62 (92)
T PF12112_consen 34 ASF-RPDHR---LSYSPYVRPMVINGVKCVVVD 62 (92)
T ss_dssp -EE--SSSS---EE--TTEEE--BTTB--EEEE
T ss_pred Hcc-CCCCc---eEecCcccceEECCEEEEEEc
Confidence 344 77778 999999999999999999764
No 23
>KOG3193|consensus
Probab=31.51 E-value=42 Score=34.18 Aligned_cols=14 Identities=14% Similarity=-0.052 Sum_probs=12.3
Q ss_pred cceeeeecCcCccC
Q psy4727 15 NNSILNSYGAKQVT 28 (253)
Q Consensus 15 ~t~tTIGYG~~~p~ 28 (253)
.|++|||||.-+|.
T Consensus 227 vtfstvgygd~~pd 240 (1087)
T KOG3193|consen 227 VTFSTVGYGDWYPD 240 (1087)
T ss_pred EEEeeccccccccc
Confidence 68999999999874
No 24
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=26.85 E-value=1.8e+02 Score=19.15 Aligned_cols=32 Identities=25% Similarity=0.391 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCC
Q psy4727 34 AIFILCLQSIVGVMIQAFMVGIVFAKLSRPKKR 66 (253)
Q Consensus 34 ~~~l~~~q~~~G~l~~a~~~GlvfaKfSrP~~r 66 (253)
-.+....+++..+++.++.+|+++--++ |++|
T Consensus 4 ~~~~~~~~~~~~v~~~~~F~gi~~w~~~-~~~k 35 (49)
T PF05545_consen 4 ETLQGFARSIGTVLFFVFFIGIVIWAYR-PRNK 35 (49)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHc-ccch
Confidence 3466778899999999999999888884 4433
No 25
>PF06200 tify: tify domain; InterPro: IPR010399 The tify domain is a 36-amino acid domain only found among Embryophyta (land plants). It has been named after the most conserved amino acid pattern (TIF[F/Y]XG) it contains, but was previously known as the Zim domain. As the use of uppercase characters (TIFY) might imply that the domain is fully conserved across proteins, a lowercase lettering has been chosen in an attempt to highlight the reality of its natural variability. Based on the domain architecture, tify domain containing proteins can be classified into two groups. Group I is formed by proteins possessing a CCT (CONSTANS, CO-like, and TOC1) domain and a GATA-type zinc finger in addition to the tify domain. Group II contains proteins characterised by the tify domain but lacking a GATA-type zinc finger. Tify domain containing proteins might be involved in developmental processes and some of them have features that are characteristic for transcription factors: a nuclear localisation and the presence of a putative DNA-binding domain []. Some proteins known to contain a tify domain include: Arabidopsis thaliana Zinc-finger protein expressed in Inflorescence Meristem (ZIM), a putative transcription factor involved in inflorescence and flower development [, ]. A. thaliana ZIM-like proteins (ZML) []. A. thaliana PEAPOD1 and PEAPOD2 (PPD1 and PPD2) [].
Probab=26.44 E-value=32 Score=21.90 Aligned_cols=20 Identities=20% Similarity=0.343 Sum_probs=14.9
Q ss_pred cceeeeecCc-CccCCCChhH
Q psy4727 15 NNSILNSYGA-KQVTEECPEA 34 (253)
Q Consensus 15 ~t~tTIGYG~-~~p~~~c~~~ 34 (253)
++|.||-||+ +++.+++|.-
T Consensus 5 ~~qLTIfY~G~V~Vfd~v~~~ 25 (36)
T PF06200_consen 5 TAQLTIFYGGQVCVFDDVPPD 25 (36)
T ss_pred CCcEEEEECCEEEEeCCCCHH
Confidence 6899999977 5666666643
No 26
>PF08285 DPM3: Dolichol-phosphate mannosyltransferase subunit 3 (DPM3); InterPro: IPR013174 This family corresponds to subunit 3 of dolichol-phosphate mannosyltransferase, an enzyme which generates mannosyl donors for glycosylphosphatidylinositols, N-glycan and protein O- and C-mannosylation. DPM3 is an integral membrane protein and plays a role in stabilising the dolichol-phosphate mannosyl transferase complex [].
Probab=20.39 E-value=46 Score=25.49 Aligned_cols=24 Identities=29% Similarity=0.450 Sum_probs=17.5
Q ss_pred eeeeecCcCccCCCChhHHHHHHHH
Q psy4727 17 SILNSYGAKQVTEECPEAIFILCLQ 41 (253)
Q Consensus 17 ~tTIGYG~~~p~~~c~~~~~l~~~q 41 (253)
-.+||||.... .|||.|.--+.-|
T Consensus 53 l~~lgy~v~tF-nDcpeA~~eL~~e 76 (91)
T PF08285_consen 53 LFTLGYGVATF-NDCPEAAKELQKE 76 (91)
T ss_pred HHHHHHhhhcc-CCCHHHHHHHHHH
Confidence 45899999875 4799998555444
Done!