Query psy4727
Match_columns 253
No_of_seqs 109 out of 410
Neff 6.3
Searched_HMMs 29240
Date Sat Aug 17 00:19:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4727.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4727hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3sya_A G protein-activated inw 100.0 1.8E-78 6.3E-83 561.1 25.4 231 13-245 98-329 (340)
2 3spc_A Inward-rectifier K+ cha 100.0 7.8E-78 2.7E-82 557.4 28.1 233 13-247 101-335 (343)
3 2qks_A KIR3.1-prokaryotic KIR 100.0 2.6E-69 8.8E-74 497.4 26.3 236 9-248 78-317 (321)
4 2gix_A Inward rectifier potass 100.0 1.2E-68 4.1E-73 465.7 22.0 189 55-245 15-204 (208)
5 1u4f_A Inward rectifier potass 100.0 9.1E-67 3.1E-71 467.5 20.8 189 55-245 20-209 (270)
6 1n9p_A GIRK1, G protein-activa 100.0 3.3E-66 1.1E-70 450.0 19.3 192 53-248 15-206 (207)
7 3agw_A KIR3.2, G protein-activ 100.0 1.6E-65 5.3E-70 446.0 18.9 185 59-245 21-205 (208)
8 1xl4_A Inward rectifier potass 100.0 8.3E-62 2.8E-66 444.0 25.8 209 13-231 89-298 (301)
9 2xky_I Inward rectifier potass 100.0 3.8E-62 1.3E-66 444.1 20.6 190 54-245 55-248 (309)
10 1p7b_A Integral membrane chann 100.0 1.2E-61 4E-66 448.3 17.0 215 9-234 96-314 (333)
11 2k1e_A Water soluble analogue 98.0 1.7E-06 5.7E-11 66.3 2.4 56 9-66 40-99 (103)
12 2a9h_A Voltage-gated potassium 97.8 1.4E-05 4.7E-10 65.8 4.8 52 13-66 91-143 (155)
13 2ih3_C Voltage-gated potassium 97.6 1.6E-05 5.4E-10 62.6 2.0 52 13-66 68-120 (122)
14 3eff_K Voltage-gated potassium 97.5 3.5E-05 1.2E-09 61.6 2.8 51 13-65 47-98 (139)
15 3pjs_K KCSA, voltage-gated pot 97.5 9.8E-06 3.4E-10 67.1 -0.9 56 9-66 67-126 (166)
16 3ouf_A Potassium channel prote 97.4 5.4E-05 1.8E-09 57.3 2.4 56 8-65 31-90 (97)
17 4h33_A LMO2059 protein; bilaye 97.4 0.0001 3.6E-09 59.1 4.1 52 13-66 50-102 (137)
18 2q67_A Potassium channel prote 97.4 0.00016 5.5E-09 56.2 4.5 56 8-65 48-107 (114)
19 3ldc_A Calcium-gated potassium 97.3 0.00026 8.8E-09 51.8 4.2 46 13-60 35-81 (82)
20 1orq_C Potassium channel; volt 97.2 0.00017 5.7E-09 61.4 3.5 48 13-62 172-220 (223)
21 3vou_A ION transport 2 domain 96.7 0.001 3.4E-08 53.7 3.7 49 8-58 51-103 (148)
22 3beh_A MLL3241 protein; transm 96.7 0.001 3.5E-08 60.2 3.8 52 13-66 168-220 (355)
23 1lnq_A MTHK channels, potassiu 96.1 0.00059 2E-08 61.4 -1.4 57 6-64 42-102 (336)
24 3um7_A Potassium channel subfa 96.1 0.0031 1E-07 57.3 3.3 48 13-62 122-170 (309)
25 4gx0_A TRKA domain protein; me 95.9 0.0032 1.1E-07 60.6 2.6 45 9-55 51-99 (565)
26 3ukm_A Potassium channel subfa 95.8 0.0043 1.5E-07 55.7 2.8 50 13-64 100-150 (280)
27 2r9r_B Paddle chimera voltage 95.7 0.0044 1.5E-07 59.8 2.8 67 15-83 385-454 (514)
28 3um7_A Potassium channel subfa 93.4 0.05 1.7E-06 49.3 3.6 54 13-66 231-289 (309)
29 3ukm_A Potassium channel subfa 92.7 0.091 3.1E-06 47.0 4.3 44 13-56 208-257 (280)
30 3rvy_A ION transport protein; 80.5 0.58 2E-05 40.7 1.6 52 15-66 190-245 (285)
31 2jz2_A SSL0352 protein; SH3-li 28.5 21 0.00072 24.7 1.2 37 141-177 2-38 (66)
No 1
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*
Probab=100.00 E-value=1.8e-78 Score=561.05 Aligned_cols=231 Identities=50% Similarity=0.853 Sum_probs=225.1
Q ss_pred cc-cceeeeecCcCccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCcceEEeccceEEeeeCCEEEEEEEE
Q psy4727 13 MS-NNSILNSYGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKLSRPKKRTQTLLFSRNAVICQRDGELCLMFRV 91 (253)
Q Consensus 13 ~~-~t~tTIGYG~~~p~~~c~~~~~l~~~q~~~G~l~~a~~~GlvfaKfSrP~~r~~tI~FS~~AVI~~~dG~~~LmfRv 91 (253)
.| +|+||||||.++|+++||.|.+++++|+++|+++.|+++|++|+||+||++|++||+||++|||+++||++|||||+
T Consensus 98 fSv~T~TTvGYGd~~p~~~~~~g~~l~~~~~l~G~~l~a~~~giv~ak~srp~~ra~ti~FS~~AVI~~~dG~~~LmfRv 177 (340)
T 3sya_A 98 FSIETETTIGYGYRVITDKCPEGIILLLIQSVLGSIVNAFMVGCMFVKISQPKKRAETLVFSTHAVISMRDGKLCLMFRV 177 (340)
T ss_dssp HHHHHHSCCCCSSSCBCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGGGGEEECSCEEEEEETTEEEEEEEE
T ss_pred hhheeeeeecCCCccCcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhcCceEEecceEEEeccCCeEEEEEEE
Confidence 67 99999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCcCeEEEEEEEEEEEEEeeeCCCeEEeeEEeeeeeecCCCCceeeeecceEEEEEcCCCCCCCCCCHhhhccCCeEE
Q psy4727 92 GDMRRSHIIEAHVRAQLIRKKVTLEGELLPFYQQELKVGGDGIEDKIFFIWPTTIVHKINPMSPLYTLSAADMLRERFEI 171 (253)
Q Consensus 92 ~N~r~~~liea~vr~~l~~~~~t~eGe~~~~~~~~l~l~~d~~~~~~~l~~p~tv~H~IDe~SPL~~~t~~~L~~~~~Ei 171 (253)
+|+|+++|+||+||+++++.+.|+|||.+++++.++++.+|.+.+++||.+||||+|+|||+||||++++++|+++++||
T Consensus 178 ~n~R~~~liea~vr~~l~~~~~t~eGe~~~l~~~~l~~~~d~~~~~~fl~~p~tv~H~Ide~SPL~~~t~~~L~~~~~Ei 257 (340)
T 3sya_A 178 GDLRNSHIVEASIRAKLIKSKQTSEGEFIPLNQTDINVGYYTGDDRLFLVSPLIISHEINQQSPFWEISKAQLPKEELEI 257 (340)
T ss_dssp EECSSSCEEEEEEEEEEECCEECTTSCEETTCEEEECSSTTTTTTSCCCSSCEEEEEECCTTSTTTTCCTTTGGGCCCEE
T ss_pred ecCCCCeEEEEEEEEEEEEEEecCCCceEeeEEeeeceeccCCCCcceeeccEEEEEECCCCCCccccChhHHhhCCeEE
Confidence 99999999999999999999999999999989999999999888999999999999999999999999999999999999
Q ss_pred EEEEEEEeccccceEEEEEeeeCCceecCCeeeeeeeeecCCCeEEEecCCCCceeeecCCCCChHhHHHHHhh
Q psy4727 172 VVILEGVIESTGMTTQARSSYLPNEILWGHRFETLVSFKKETGEHEVNYGLFNNTYEVHTPLCSAQALDQLLAI 245 (253)
Q Consensus 172 iV~l~G~de~t~~tv~aR~SY~~~eI~wg~rF~~~v~~~~~~g~~~iD~~~F~~~~~~~~p~~sa~~~~~~~~~ 245 (253)
+|+++|+||+|||++|||+||.++||+|||||+||+. .++|+|.|||++||+++|+++|.|||+|++|..+-
T Consensus 258 vV~l~G~de~t~~t~qaR~SY~~~eI~wg~rF~~ii~--~~~g~~~vD~s~F~~~~~v~~p~csa~~~~~~~~~ 329 (340)
T 3sya_A 258 VVILEGMVEATGMTCQARSSYITSEILWGYRFTPVLT--LEDGFYEVDYNSFHETYETSTPSLSAKELAELANR 329 (340)
T ss_dssp EEEEEEEESSSCCEEEEEEEEEGGGEEETEEECCCEE--EETTEEEECGGGSSCEEECCCCCSCHHHHHHHHHH
T ss_pred EEEEEEEeccccceEEEEEEEcHHHEecCCEeceeEE--cCCCeEEEEhHHcCcceEcCCCCCCHHHHHHHHhh
Confidence 9999999999999999999999999999999999998 35899999999999999999999999999988763
No 2
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*
Probab=100.00 E-value=7.8e-78 Score=557.43 Aligned_cols=233 Identities=54% Similarity=0.894 Sum_probs=225.7
Q ss_pred cc-cceeeeecCcCccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCcceEEeccceEEeeeCCEEEEEEEE
Q psy4727 13 MS-NNSILNSYGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKLSRPKKRTQTLLFSRNAVICQRDGELCLMFRV 91 (253)
Q Consensus 13 ~~-~t~tTIGYG~~~p~~~c~~~~~l~~~q~~~G~l~~a~~~GlvfaKfSrP~~r~~tI~FS~~AVI~~~dG~~~LmfRv 91 (253)
.| +|+||||||.++|+++||.|.+++++|+++|+++.|+++|++||||+||++|++||+||++|||+++||++|||||+
T Consensus 101 fSv~T~TTvGYGd~~p~~~~~~~~~l~~~~~l~G~~l~a~~~giv~ak~srp~~r~~ti~FS~~AVI~~~dG~~~LmfRv 180 (343)
T 3spc_A 101 FSIETQTTIGYGFRCVTEECPLAVFMVVVQSIVGCIIDSFMIGAIMAKMARPKKRAQTLLFSHNAVVAMRDGKLCLMWRV 180 (343)
T ss_dssp HHHHHHSCCCCSSSEECSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCCCEEECSCEEEEEETTEEEEEEEE
T ss_pred eeeeeeEeecCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhcCcEEeccceEEecCCCcEEEEEEE
Confidence 77 99999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCcCeEEEEEEEEEEEEEeeeCCCeEEeeEEeeeeeecCCCCceeeeecceEEEEEcCCCCCCCCCCHhhhccCCeEE
Q psy4727 92 GDMRRSHIIEAHVRAQLIRKKVTLEGELLPFYQQELKVGGDGIEDKIFFIWPTTIVHKINPMSPLYTLSAADMLRERFEI 171 (253)
Q Consensus 92 ~N~r~~~liea~vr~~l~~~~~t~eGe~~~~~~~~l~l~~d~~~~~~~l~~p~tv~H~IDe~SPL~~~t~~~L~~~~~Ei 171 (253)
+|+|+++|+||+||++|++.++|+|||.+++++.++++.+|.+.+++||.+||||+|+|||+||||++++++|+++++||
T Consensus 181 ~n~R~~~liea~vr~~l~r~~~t~eGe~~~l~~~~l~~~~d~~~~~~fl~~p~tv~H~IDe~SPL~~~t~~~L~~~~~Ei 260 (343)
T 3spc_A 181 GNLRKSHIVEAHVRAQLIKPRITEEGEYIPLDQIDIDVGFDKGLDRIFLVSPITILHEINEDSPLFGISRQDLETDDFEI 260 (343)
T ss_dssp EESSSSCEEEEEEEEEEEEEEECTTSCEEEEEEEEECSSGGGTTTBCCCSSCEEEEEECCTTSTTTTCCHHHHTTCCCEE
T ss_pred ecCCCCeEEEEEEEEEEEEEEEcCCCcEEeeEEEEeeecccCCCCcceeeccEEEEEeCCCCCCcccCCHHHHhhCCeEE
Confidence 99999999999999999999999999999999999999998888899999999999999999999999999999999999
Q ss_pred EEEEEEEeccccceEEEEEeeeCCceecCCeeeeeeeeecCCCeEEEecCCCCceeeec-CCCCChHhHHHHHhhcC
Q psy4727 172 VVILEGVIESTGMTTQARSSYLPNEILWGHRFETLVSFKKETGEHEVNYGLFNNTYEVH-TPLCSAQALDQLLAIHG 247 (253)
Q Consensus 172 iV~l~G~de~t~~tv~aR~SY~~~eI~wg~rF~~~v~~~~~~g~~~iD~~~F~~~~~~~-~p~~sa~~~~~~~~~~~ 247 (253)
+|+++|+||+|||++|||+||.++||+|||||+||+. .++|+|.|||++||+++|++ +|.|||+|++|.+.+.+
T Consensus 261 vV~l~G~de~t~~t~qaR~SY~~~eI~wg~rF~~ii~--~~~g~~~vD~s~F~~~~~v~~tp~csa~~~~~~~~~~~ 335 (343)
T 3spc_A 261 VVILEGMVEATAMTTQARSSYLASEILWGHRFEPVLF--EEKNQYKVDYSHFHKTYEVPSTPRCSAKDLVENKFLLS 335 (343)
T ss_dssp EEEEEEEETTTCSEEEEEEEEEGGGEEETEEECCCEE--EETTEEEECGGGTTCEEECTTSCCSCHHHHHHHHHHHH
T ss_pred EEEEEEEecccCcEEEEEEEEchHHeecCCEeeeeEE--cCCCeEEEEhHHcCCcccCCCCCCCCHHHHhhhhhhcC
Confidence 9999999999999999999999999999999999998 35899999999999999995 99999999999876643
No 3
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Probab=100.00 E-value=2.6e-69 Score=497.44 Aligned_cols=236 Identities=43% Similarity=0.708 Sum_probs=219.5
Q ss_pred Cccc---cc-cceeeeecCcCccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCcceEEeccceEEeeeCCE
Q psy4727 9 SPID---MS-NNSILNSYGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKLSRPKKRTQTLLFSRNAVICQRDGE 84 (253)
Q Consensus 9 ~~~~---~~-~t~tTIGYG~~~p~~~c~~~~~l~~~q~~~G~l~~a~~~GlvfaKfSrP~~r~~tI~FS~~AVI~~~dG~ 84 (253)
|..| .| .|+||||||.++|. .+.|-+++++++++|+++.|+++|++++||++|++|+++++||++||||++||+
T Consensus 78 s~~~a~y~s~vT~tTVGYGDi~P~--t~~gr~~~~~~~l~G~~~~a~~~g~i~~~~~~~~~r~~~i~fS~~avI~~~~g~ 155 (321)
T 2qks_A 78 GFGGAFFFSVETLATVGYGDMHPQ--TVYAHWIATLEIFVGMSSIALATGCAFIKMSQPKKRAETLMFSEHAVISMRDGK 155 (321)
T ss_dssp THHHHHHHHHHHHTTCCCCSSCBC--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCGGGTEEECSCEEEEEETTE
T ss_pred chhheeeeeeEEeccccCCCcCcc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCceEEecCCCc
Confidence 4455 66 99999999999886 568899999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEeeCCcCeEEEEEEEEEEEEEeeeCCCeEEeeEEeeeeeecCCCCceeeeecceEEEEEcCCCCCCCCCCHhhh
Q psy4727 85 LCLMFRVGDMRRSHIIEAHVRAQLIRKKVTLEGELLPFYQQELKVGGDGIEDKIFFIWPTTIVHKINPMSPLYTLSAADM 164 (253)
Q Consensus 85 ~~LmfRv~N~r~~~liea~vr~~l~~~~~t~eGe~~~~~~~~l~l~~d~~~~~~~l~~p~tv~H~IDe~SPL~~~t~~~L 164 (253)
+|||||++|+|+++++||+||+++++.+.|+|||.+++++.+|++++|.+.+.++|.+||||+|+|||+||||++++++|
T Consensus 156 ~~L~fRv~n~r~~~li~a~vr~~l~~~~~t~eGe~~~~~~~~l~l~~d~~~~~~~l~~p~tv~H~Id~~SPL~~~~~~~L 235 (321)
T 2qks_A 156 LTLMFRVGNLRNSHMVSAQIRCKLLKSRQTPEGEFLPLDQLELDVGFSTGADQLFLVSPLTICHVIDAKSPFYDLSQRSM 235 (321)
T ss_dssp EEEEEEEEECSCCCEEEEEEEEEEEEEEECTTCCEEEEEEEEECSSTTTTTTBCCCSSCEEEEEECSTTSTTTTCCHHHH
T ss_pred eEEEEEecccccCeeeeeEEEEEEEEEEecCCCcEEEeEEeeeecccCCCCCceEEEccEEEEEECCCCCCccccCHhHH
Confidence 99999999999999999999999999999999999999999999998887889999999999999999999999999999
Q ss_pred ccCCeEEEEEEEEEeccccceEEEEEeeeCCceecCCeeeeeeeeecCCCeEEEecCCCCceeeecCCCCChHhHHHHHh
Q psy4727 165 LRERFEIVVILEGVIESTGMTTQARSSYLPNEILWGHRFETLVSFKKETGEHEVNYGLFNNTYEVHTPLCSAQALDQLLA 244 (253)
Q Consensus 165 ~~~~~EiiV~l~G~de~t~~tv~aR~SY~~~eI~wg~rF~~~v~~~~~~g~~~iD~~~F~~~~~~~~p~~sa~~~~~~~~ 244 (253)
.++++||+|+++|+||+|||+|||||||.++||+|||||+||+..+ +|.|.|||++||+++|+++|.|||+|+++.+.
T Consensus 236 ~~~~~eivV~l~G~~e~t~~t~~ar~sY~~~eI~wg~rF~~i~~~~--~~~~~vD~~~f~~~~~~~~p~~sa~~~~~~~~ 313 (321)
T 2qks_A 236 QTEQFEVVVILEGIVETTGMTCQARTSYTEDEVLWGHRFFPVISLE--EGFFKVDYSQFHATFEVPTPPYSVKEQEEMLL 313 (321)
T ss_dssp TTCCCEEEEEEEEEETTTTEEEEEEEEEEGGGEEETEEECCCEEEC--SSSEEECGGGSSCEEECCCCSSCHHHHHCC--
T ss_pred hcCCeEEEEEEEEEehhcCcEEEEEEEEChHHeecCCEeceeeEEc--CCcEEEehHHhCCceecCCCCcCHHHHHhhcC
Confidence 9999999999999999999999999999999999999999999843 44499999999999999999999999999887
Q ss_pred hcCC
Q psy4727 245 IHGT 248 (253)
Q Consensus 245 ~~~~ 248 (253)
++.+
T Consensus 314 ~~~~ 317 (321)
T 2qks_A 314 MSSP 317 (321)
T ss_dssp ----
T ss_pred CCCC
Confidence 6654
No 4
>2gix_A Inward rectifier potassium channel 2; cytoplasmic domains of KIR2.1, andersen'S mutation, metal transport; 2.02A {Mus musculus}
Probab=100.00 E-value=1.2e-68 Score=465.74 Aligned_cols=189 Identities=52% Similarity=0.848 Sum_probs=182.6
Q ss_pred HHHHHhcCCcCCcceEEeccceEEeeeCCEEEEEEEEeeCCcCeEEEEEEEEEEEEEeeeCCCeEEeeEEeeeeeecCCC
Q psy4727 55 IVFAKLSRPKKRTQTLLFSRNAVICQRDGELCLMFRVGDMRRSHIIEAHVRAQLIRKKVTLEGELLPFYQQELKVGGDGI 134 (253)
Q Consensus 55 lvfaKfSrP~~r~~tI~FS~~AVI~~~dG~~~LmfRv~N~r~~~liea~vr~~l~~~~~t~eGe~~~~~~~~l~l~~d~~ 134 (253)
++|||||||++|++||+||++|||+++||++||||||||+|+++|+||+||++|++.+.|+|||.+++++.+|++++|.+
T Consensus 15 ~vfakisrP~kRa~tI~FS~~AVI~~~dG~~~LmfRv~n~R~~~iiea~vr~~L~r~~~t~EGe~~~~~~~~L~l~~d~~ 94 (208)
T 2gix_A 15 CNVQFINVGEKRNETLVFSHNAVIAMRDGKLCLMWRVGNLQKSHLVEAHVRAQLLKSRITSEGEYIPLDQIDINVGFDSG 94 (208)
T ss_dssp BCEEEECCCCSCSCSEEECSCEEEEEETTEEEEEEEEEECCSSCEEEEEEEEEEEEEEECTTCCEEEEEEEEECSSGGGT
T ss_pred EEEEEecCCcccCCcEEecCeEEEEEeCCEEEEEEEEecCccCeEEeeEEEEEEEEEEeCCCCcEEEEEEEEEEeccCCC
Confidence 36899999999999999999999999999999999999999999999999999999999999999988999999999887
Q ss_pred CceeeeecceEEEEEcCCCCCCCCCCHhhhccCCeEEEEEEEEEeccccceEEEEEeeeCCceecCCeeeeeeeeecCCC
Q psy4727 135 EDKIFFIWPTTIVHKINPMSPLYTLSAADMLRERFEIVVILEGVIESTGMTTQARSSYLPNEILWGHRFETLVSFKKETG 214 (253)
Q Consensus 135 ~~~~~l~~p~tv~H~IDe~SPL~~~t~~~L~~~~~EiiV~l~G~de~t~~tv~aR~SY~~~eI~wg~rF~~~v~~~~~~g 214 (253)
.+++||.+||||+|+|||+||||++++++|.++++||+|+++|+||+|||++|||+||.++||+|||||+||+. .++|
T Consensus 95 ~~~~fl~~p~tv~H~IDe~SPL~~~t~~~L~~~~~EivV~l~G~dest~qt~qaR~SY~~~eIlWg~rF~~iv~--~~~g 172 (208)
T 2gix_A 95 IDRIFLVSPITIVHEIDEDSPLYDLSKQDIDNADFEIVVILEGMVEATAMTKQCRSSYLANEILWGHRYEPVLF--EEKH 172 (208)
T ss_dssp TTEECCSSCEEEEEECCTTSTTTTCCHHHHHTCCCEEEEEEEEEETTTCCEEEEEEEEEGGGEEETEEECCCEE--ECSS
T ss_pred CCceEEeccEEEEEECCCCCCccccChhHHhcCCEEEEEEEEEEecccCcEEEEEEEEchHHEEeCCEeceeEE--cCCC
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999997 3689
Q ss_pred eEEEecCCCCceeeec-CCCCChHhHHHHHhh
Q psy4727 215 EHEVNYGLFNNTYEVH-TPLCSAQALDQLLAI 245 (253)
Q Consensus 215 ~~~iD~~~F~~~~~~~-~p~~sa~~~~~~~~~ 245 (253)
+|.|||++||+++|++ +|.|||+||++.+.+
T Consensus 173 ~~~VD~s~F~~~~~v~~tp~csa~~l~~~~~~ 204 (208)
T 2gix_A 173 YYKVDYSRFHKTYEVPNTPLCSARDLAEKKYI 204 (208)
T ss_dssp SEEEEGGGTTCEEECTTSCCSCHHHHHHHHHH
T ss_pred eEEEEhHHcCcceEcCCCCCCCHHHHhhcccc
Confidence 9999999999999996 999999999998765
No 5
>1u4f_A Inward rectifier potassium channel 2; cytoplasmic domain, KIR2.1, IRK1, inwardly rectifying K channel, rectification, allergen; 2.41A {Mus musculus}
Probab=100.00 E-value=9.1e-67 Score=467.49 Aligned_cols=189 Identities=53% Similarity=0.858 Sum_probs=181.5
Q ss_pred HHHHHhcCCcCCcceEEeccceEEeeeCCEEEEEEEEeeCCcCeEEEEEEEEEEEEEeeeCCCeEEeeEEeeeeeecCCC
Q psy4727 55 IVFAKLSRPKKRTQTLLFSRNAVICQRDGELCLMFRVGDMRRSHIIEAHVRAQLIRKKVTLEGELLPFYQQELKVGGDGI 134 (253)
Q Consensus 55 lvfaKfSrP~~r~~tI~FS~~AVI~~~dG~~~LmfRv~N~r~~~liea~vr~~l~~~~~t~eGe~~~~~~~~l~l~~d~~ 134 (253)
++|||||||++|+++|+||++|||+++||++||||||+|+|+++|+||+||++|++.++|+|||.+++++.+|++++|.+
T Consensus 20 ~vFaKiSrPkkRa~tI~FS~~AVI~~rdG~~~LMfRVaN~R~s~Iiea~Vrl~Lir~~~T~EGe~~~~~~~dL~l~~d~~ 99 (270)
T 1u4f_A 20 CNVQFINVGEKRNETLVFSHNAVIAMRDGKLCLMWRVGNLRKSHLVEAHVRAQLLKSRITSEGEYIPLDQIDINVGFDSG 99 (270)
T ss_dssp BCEEEESCCCTTTCSEEECSSEEEEEETTEEEEEEEEEECSSSCEEEEEEEEEEEEEEECTTCCEEEEEEEECCSSTTTT
T ss_pred EEEEEccCCcCCCceEEecCcEEEEEeCCEEEEEEEEecCCCCeEEeeEEEEEEEEEEEcCCCcEEEeEEEEEEeccCCC
Confidence 47999999999999999999999999999999999999999999999999999999999999999988999999999888
Q ss_pred CceeeeecceEEEEEcCCCCCCCCCCHhhhccCCeEEEEEEEEEeccccceEEEEEeeeCCceecCCeeeeeeeeecCCC
Q psy4727 135 EDKIFFIWPTTIVHKINPMSPLYTLSAADMLRERFEIVVILEGVIESTGMTTQARSSYLPNEILWGHRFETLVSFKKETG 214 (253)
Q Consensus 135 ~~~~~l~~p~tv~H~IDe~SPL~~~t~~~L~~~~~EiiV~l~G~de~t~~tv~aR~SY~~~eI~wg~rF~~~v~~~~~~g 214 (253)
.+++||.+||||+|+|||+||||++++++|.+.++||+|+|+|+||+|||+||||+||.++||+|||||+||+. .++|
T Consensus 100 ~~~~fL~~P~tV~H~IDe~SPLy~~t~e~L~~~d~EIvV~LeG~dEsTgqtvqARtSY~~~EIlWghRF~~iv~--~~~G 177 (270)
T 1u4f_A 100 IDRIFLVSPITIVHEIDEDSPLYDLSKQDIDNADFEIVVILEGMVEATAMTTQCRSSYLANEILWGHRYEPVLF--EEKH 177 (270)
T ss_dssp TTEECCSSCEEEEEECCTTSTTTTCCHHHHHHCCCEEEEEEEEEETTCSCEEEEEEEEEGGGEEETEEECCCEE--ECSS
T ss_pred CCceEEeccEEEEEECCCCCCccccChhhHhcCCeEEEEEEEEEecccCcEEEEEEEEchHHEEeCCEeceeEE--cCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999998 3689
Q ss_pred eEEEecCCCCceeeec-CCCCChHhHHHHHhh
Q psy4727 215 EHEVNYGLFNNTYEVH-TPLCSAQALDQLLAI 245 (253)
Q Consensus 215 ~~~iD~~~F~~~~~~~-~p~~sa~~~~~~~~~ 245 (253)
+|.|||++||+++|++ +|.|||++|++.+..
T Consensus 178 ~y~VD~s~Fh~t~pv~~tP~csa~~l~e~~~~ 209 (270)
T 1u4f_A 178 YYKVDYSRFHKTYEVPNTPLCSARDLAEKKYI 209 (270)
T ss_dssp SEEEEGGGSSCEEECTTSCCSCHHHHHHHC--
T ss_pred eEEEEhHHcCcceecCCCCCCCHHHHhhhhcc
Confidence 9999999999999996 999999999997765
No 6
>1n9p_A GIRK1, G protein-activated inward rectifier potassium CH; beta barrel, cytoplasmic domain, inward rectifier potassium channel, metal transport; 1.80A {Mus musculus} SCOP: b.1.18.16 PDB: 3k6n_A 1u4e_A
Probab=100.00 E-value=3.3e-66 Score=449.97 Aligned_cols=192 Identities=45% Similarity=0.779 Sum_probs=176.9
Q ss_pred HHHHHHHhcCCcCCcceEEeccceEEeeeCCEEEEEEEEeeCCcCeEEEEEEEEEEEEEeeeCCCeEEeeEEeeeeeecC
Q psy4727 53 VGIVFAKLSRPKKRTQTLLFSRNAVICQRDGELCLMFRVGDMRRSHIIEAHVRAQLIRKKVTLEGELLPFYQQELKVGGD 132 (253)
Q Consensus 53 ~GlvfaKfSrP~~r~~tI~FS~~AVI~~~dG~~~LmfRv~N~r~~~liea~vr~~l~~~~~t~eGe~~~~~~~~l~l~~d 132 (253)
.|++|+||+||+++ ||+||++|||+++||++||||||||+|+++|+||+||++|++.++|+|||.+++++.+|++.+|
T Consensus 15 ~~v~~~rfsk~Ra~--tI~FS~~AVI~~~dG~~~LmfRv~n~R~~~iiea~vr~~L~r~~~t~EGe~~~~~~~~L~l~~d 92 (207)
T 1n9p_A 15 CNVQHGNLGSERAE--TLMFSEHAVISMRDGKLTLMFRVGNLRNSHMVSAQIRCKLLKSRQTPEGEFLPLDQLELDVGFS 92 (207)
T ss_dssp BCEEC-----CCSC--CSSBCSCEEEEEETTEEEEEEEECCCSSSCEEEEEEEEEEEEEEECTTSCEEEEEEEECCSSTT
T ss_pred eeeEEeeecCCccc--eEEEeCcEEEEEECCEEEEEEEEecCCCCeEEccEEEEEEEEEEEcCCCcEEEEEEEeeEeecc
Confidence 47889999997754 7999999999999999999999999999999999999999999999999999999999999888
Q ss_pred CCCceeeeecceEEEEEcCCCCCCCCCCHhhhccCCeEEEEEEEEEeccccceEEEEEeeeCCceecCCeeeeeeeeecC
Q psy4727 133 GIEDKIFFIWPTTIVHKINPMSPLYTLSAADMLRERFEIVVILEGVIESTGMTTQARSSYLPNEILWGHRFETLVSFKKE 212 (253)
Q Consensus 133 ~~~~~~~l~~p~tv~H~IDe~SPL~~~t~~~L~~~~~EiiV~l~G~de~t~~tv~aR~SY~~~eI~wg~rF~~~v~~~~~ 212 (253)
.+.+.++|.+||||+|+|||+||||++++++|.++++||+|+++|+||+|||+|||||||.++||+|||||+||+..+
T Consensus 93 ~~~~~~~l~~p~tv~H~IDe~SPL~~~t~~~L~~~~~EivV~l~G~de~t~~t~qaR~SY~~~eIlWg~rF~~iv~~~-- 170 (207)
T 1n9p_A 93 TGADQLFLVSPLTICHVIDAKSPFYDLSQRSMQTEQFEVVVILEGIVETTGMTCQARTSYTEDEVLWGHRFFPVISLE-- 170 (207)
T ss_dssp TTTTEEECSSCEEEEEECCTTSTTTTCCTTGGGTCCCEEEEEEEEEETTTCCBCCEEEEEEGGGEEETEEECCCEEES--
T ss_pred CCCCceEEEccEEEEEeCCCCCCccccCHhHHhcCCeEEEEEEEEEehhhCcEEEEEEEEChHHeeeCCEeeeeEEEc--
Confidence 888899999999999999999999999999999999999999999999999999999999999999999999999843
Q ss_pred CCeEEEecCCCCceeeecCCCCChHhHHHHHhhcCC
Q psy4727 213 TGEHEVNYGLFNNTYEVHTPLCSAQALDQLLAIHGT 248 (253)
Q Consensus 213 ~g~~~iD~~~F~~~~~~~~p~~sa~~~~~~~~~~~~ 248 (253)
+|.|.|||++||+++|+++|.|||+||++...++.|
T Consensus 171 ~~~~~VD~s~F~~~~~v~~p~~sa~~l~e~~~~~~~ 206 (207)
T 1n9p_A 171 EGFFKVDYSQFHATFEVPTPPYSVKEQEEMLLMSSP 206 (207)
T ss_dssp SSCEEECGGGSSCEEECCCCCSCHHHHHHHHHHHCC
T ss_pred CCeEEEEHHHhCCceEcCCCccCHHHHhhhhccCCC
Confidence 455999999999999999999999999998887654
No 7
>3agw_A KIR3.2, G protein-activated inward rectifier potassium CH; cytoplasmic assembly, ION channel, beta-barrel, transport PR; 2.20A {Mus musculus} PDB: 3at8_A 3at9_A 3ata_A 3atb_A 3atd_A 3ate_A 3atf_A 2e4f_A 3auw_B 3auw_A
Probab=100.00 E-value=1.6e-65 Score=446.02 Aligned_cols=185 Identities=50% Similarity=0.823 Sum_probs=174.0
Q ss_pred HhcCCcCCcceEEeccceEEeeeCCEEEEEEEEeeCCcCeEEEEEEEEEEEEEeeeCCCeEEeeEEeeeeeecCCCCcee
Q psy4727 59 KLSRPKKRTQTLLFSRNAVICQRDGELCLMFRVGDMRRSHIIEAHVRAQLIRKKVTLEGELLPFYQQELKVGGDGIEDKI 138 (253)
Q Consensus 59 KfSrP~~r~~tI~FS~~AVI~~~dG~~~LmfRv~N~r~~~liea~vr~~l~~~~~t~eGe~~~~~~~~l~l~~d~~~~~~ 138 (253)
+.++|++||+||+||++|||+++||++||||||||+|+++|+||+||++|++.++|+|||.+++.+.+|+|..|.+.+++
T Consensus 21 ~~~~pk~Ra~tI~FS~~AVI~~~dG~~~LmfRv~n~R~~~iiea~vr~~L~~~~~t~EGe~~~~~~~dL~l~~d~~~~~~ 100 (208)
T 3agw_A 21 HGNVREKRAETLVFSTHAVISMRDGKLCLMFRVGDLRNSHIVEASIRAKLIKSKQTSEGEFIPLNQTDINVGYYTGDDRL 100 (208)
T ss_dssp TTCCC---CCCCCBCSCEEEEEETTEEEEEEEECCCTTCCEEEEEEEEEEECCEECTTCCEETTCEEECCSSTTTTTTBC
T ss_pred EeccCCcccccEEecceEEEEecCCeEEEEEEEecCccCeEEeeEEEEEEEEEEECCCCcEEEEEEEeeecccCCCCCce
Confidence 44667788889999999999999999999999999999999999999999999999999999888899999888888899
Q ss_pred eeecceEEEEEcCCCCCCCCCCHhhhccCCeEEEEEEEEEeccccceEEEEEeeeCCceecCCeeeeeeeeecCCCeEEE
Q psy4727 139 FFIWPTTIVHKINPMSPLYTLSAADMLRERFEIVVILEGVIESTGMTTQARSSYLPNEILWGHRFETLVSFKKETGEHEV 218 (253)
Q Consensus 139 ~l~~p~tv~H~IDe~SPL~~~t~~~L~~~~~EiiV~l~G~de~t~~tv~aR~SY~~~eI~wg~rF~~~v~~~~~~g~~~i 218 (253)
||.+||||+|+|||+||||++++++|.++++||+|+++|+||+|||++||||||.++||+|||||+||+.. ++|+|.|
T Consensus 101 fl~~p~tv~H~IDe~SPL~~~t~~~L~~~~~EivV~l~G~dest~~t~qaR~SY~~~eIlWg~rF~~iv~~--~~G~~~V 178 (208)
T 3agw_A 101 FLVSPLIISHEINQQSPFWEISKAQLPKEELEIVVILEGMVEATGMTCQARSSYITSEILWGYRFTPVLTL--EDGFYEV 178 (208)
T ss_dssp CCSSCEEEEEECCTTSTTTTCCTTTGGGCCCEEEEEEEEEETTTCSEEEEEEEEEGGGEEETEEECCCEEE--ETTEEEE
T ss_pred EEeccEEEEEECCCCCCccccCHhHHhcCCeEEEEEEEEEehhhCcEEEEEEEEChHHEEeCCEeeeeEEe--cCCeEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999984 6999999
Q ss_pred ecCCCCceeeecCCCCChHhHHHHHhh
Q psy4727 219 NYGLFNNTYEVHTPLCSAQALDQLLAI 245 (253)
Q Consensus 219 D~~~F~~~~~~~~p~~sa~~~~~~~~~ 245 (253)
||++||+++|+++|.|||+||++...-
T Consensus 179 D~s~F~~~~pv~~p~~sa~~l~~~~~~ 205 (208)
T 3agw_A 179 DYNSFHETYETSTPSLSAKELAELANR 205 (208)
T ss_dssp CGGGTTCEEECCCCCSCHHHHHHHHTC
T ss_pred EhHHcCcceecCCCcCCHHHHHHHHhh
Confidence 999999999999999999999998653
No 8
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*
Probab=100.00 E-value=8.3e-62 Score=443.99 Aligned_cols=209 Identities=26% Similarity=0.450 Sum_probs=199.2
Q ss_pred cc-cceeeeecCcCccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCcceEEeccceEEeeeCCEEEEEEEE
Q psy4727 13 MS-NNSILNSYGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKLSRPKKRTQTLLFSRNAVICQRDGELCLMFRV 91 (253)
Q Consensus 13 ~~-~t~tTIGYG~~~p~~~c~~~~~l~~~q~~~G~l~~a~~~GlvfaKfSrP~~r~~tI~FS~~AVI~~~dG~~~LmfRv 91 (253)
.| .|+||||||.++| .|+.|.+++++|+++|+++.|+++|++++||+||++| +.||++|||+++||++|||||+
T Consensus 89 fs~vT~tTvGYGDi~P--~t~~gr~~~~~~~l~G~~~~a~~~g~v~~~~~~~~~r---~~fs~~~vI~~~~g~~~l~~R~ 163 (301)
T 1xl4_A 89 FSVQTMATIGYGKLIP--IGPLANTLVTLEALCGMLGLAVAASLIYARFTRPTAG---VLFSSRMVISDFEGKPTLMMRL 163 (301)
T ss_dssp HHHHHHTTCCCSSSCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCC---EEECSCEEEEEETTEEEEEEEE
T ss_pred HhhhheeccCCCCCcC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhh---hccCCeEEEecCCCcceeeeec
Confidence 67 9999999999988 4899999999999999999999999999999999998 9999999999999999999999
Q ss_pred eeCCcCeEEEEEEEEEEEEEeeeCCCeEEeeEEeeeeeecCCCCceeeeecceEEEEEcCCCCCCCCCCHhhhccCCeEE
Q psy4727 92 GDMRRSHIIEAHVRAQLIRKKVTLEGELLPFYQQELKVGGDGIEDKIFFIWPTTIVHKINPMSPLYTLSAADMLRERFEI 171 (253)
Q Consensus 92 ~N~r~~~liea~vr~~l~~~~~t~eGe~~~~~~~~l~l~~d~~~~~~~l~~p~tv~H~IDe~SPL~~~t~~~L~~~~~Ei 171 (253)
+|.|+++++||+||+++++.++++|||.+ ..+.+|+++++ +.++|.+||+|+|+|||+||||++++++|.++++||
T Consensus 164 ~n~r~~~li~a~vr~~l~~~~~t~eGe~~-~~~~~L~l~~~---~~~~l~~p~~v~H~Id~~SPL~~~s~~~L~~~~~ei 239 (301)
T 1xl4_A 164 ANLRIEQIIEADVHLVLVRSEISQEGMVF-RRFHDLTLTRS---RSPIFSLSWTVMHPIDHHSPIYGETDETLRNSHSEF 239 (301)
T ss_dssp EECSSSCEEEEEEEEEEEEEEECTTSCEE-EEEEECCCSCC---EEEEECSEEEEEEECCTTCTTTTCCHHHHHHHTCEE
T ss_pred cccccceEEccEEEEEEEEeeEcCCCcEE-EEEeccccccC---CeEEEEeeEEEEEecCCCCCcccCCHhHHhcCCeEE
Confidence 99999999999999999999999999998 56889999753 578999999999999999999999999999999999
Q ss_pred EEEEEEEeccccceEEEEEeeeCCceecCCeeeeeeeeecCCCeEEEecCCCCceeeecC
Q psy4727 172 VVILEGVIESTGMTTQARSSYLPNEILWGHRFETLVSFKKETGEHEVNYGLFNNTYEVHT 231 (253)
Q Consensus 172 iV~l~G~de~t~~tv~aR~SY~~~eI~wg~rF~~~v~~~~~~g~~~iD~~~F~~~~~~~~ 231 (253)
+|+++|+||+|||++|||+||.++||+|||||+||+.. .++|+|.|||++||+++|-+.
T Consensus 240 vV~l~G~de~t~~~~~ar~sY~~~eI~wg~rF~~~~~~-~~~g~~~vD~~~f~~~~~~~~ 298 (301)
T 1xl4_A 240 LVLFTGHHEAFAQNVHARHAYSCDEIIWGGHFVDVFTT-LPDGRRALDLGKFHEIAQHHH 298 (301)
T ss_dssp EEEEEEEETTTTEEEEEEEEEEGGGEEETCEECCCEEE-CTTSCEEECTTSTTCEECCCC
T ss_pred EEEEEEEecccCcEEEEEEeecHHHeeeCCEecceeeE-CCCCcEEEEhHHhcCcccccc
Confidence 99999999999999999999999999999999999984 468999999999999999753
No 9
>2xky_I Inward rectifier potassium channel 2; ION channel, metal transport, membrane protein; 17.20A {Mus musculus}
Probab=100.00 E-value=3.8e-62 Score=444.07 Aligned_cols=190 Identities=53% Similarity=0.872 Sum_probs=179.4
Q ss_pred HHHHHHhcC---CcCCcceEEeccceEEeeeCCEEEEEEEEeeCCcCeEEEEEEEEEEEEEeeeCCCeEEeeEEeeeeee
Q psy4727 54 GIVFAKLSR---PKKRTQTLLFSRNAVICQRDGELCLMFRVGDMRRSHIIEAHVRAQLIRKKVTLEGELLPFYQQELKVG 130 (253)
Q Consensus 54 GlvfaKfSr---P~~r~~tI~FS~~AVI~~~dG~~~LmfRv~N~r~~~liea~vr~~l~~~~~t~eGe~~~~~~~~l~l~ 130 (253)
++.|+++++ +++||+||+||++|||+++||++||||||+|+|+++|+||+||++|++.++|+|||.+++++.+|++.
T Consensus 55 nV~f~~~~~k~qrr~RA~TI~FS~~AVI~~rDG~~cLMFRVaN~R~s~Iiea~Vr~~Lir~~~T~EGe~i~~~~~dL~l~ 134 (309)
T 2xky_I 55 NVQFINVGEKGQRGGRNETLVFSHNAVIAMRDGKLCLMWRVGNLRKSHLVEAHVRAQLLKSRITSEGEYIPLDQIDINVG 134 (309)
T ss_pred eeEEeecCcccccCCCcceEEEeccEEEEEECCEEEEEEEEecCcCCeEEccEEEEEEEEEEEcCCCcEEEeeeeeeecc
Confidence 345666555 37889999999999999999999999999999999999999999999999999999999899999999
Q ss_pred cCCCCceeeeecceEEEEEcCCCCCCCCCCHhhhccCCeEEEEEEEEEeccccceEEEEEeeeCCceecCCeeeeeeeee
Q psy4727 131 GDGIEDKIFFIWPTTIVHKINPMSPLYTLSAADMLRERFEIVVILEGVIESTGMTTQARSSYLPNEILWGHRFETLVSFK 210 (253)
Q Consensus 131 ~d~~~~~~~l~~p~tv~H~IDe~SPL~~~t~~~L~~~~~EiiV~l~G~de~t~~tv~aR~SY~~~eI~wg~rF~~~v~~~ 210 (253)
+|.+.+++||.+||||+|+|||+||||++++++|.+.++||+|+|+|+||+|||++|||+||.++||+|||||+||+.
T Consensus 135 ~d~~~~~~fL~~P~tV~H~IDe~SPLy~~t~e~L~~~dfEIVV~LeG~dEsTgqtvqARtSY~~~EIlWGhRF~piv~-- 212 (309)
T 2xky_I 135 FDSGIDRIFLVSPITIVHEIDEDSPLYDLSKQDIDNADFEIVVILEGMVEATAMTTQCRSSYLANEILWGHRYEPVLF-- 212 (309)
T ss_pred cCCCCcceeEeccEEEEEECCCCCCccccChhhHhcCCeEEEEEEEEEecccCceEEEEEEEchHHeeeCCEeceeEE--
Confidence 887778999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCCeEEEecCCCCceeeec-CCCCChHhHHHHHhh
Q psy4727 211 KETGEHEVNYGLFNNTYEVH-TPLCSAQALDQLLAI 245 (253)
Q Consensus 211 ~~~g~~~iD~~~F~~~~~~~-~p~~sa~~~~~~~~~ 245 (253)
.++|+|.|||++||+++|++ +|.|||++|++.+.+
T Consensus 213 ~~~G~y~VD~s~Fh~t~pv~~tP~cSa~~l~e~~~~ 248 (309)
T 2xky_I 213 EEKHYYKVDYSRFHKTYEVPNTPLCSARDLAEKKYI 248 (309)
T ss_pred cCCCeEEEEhHHcCcceecCCCCCCCHHHHhhhhcc
Confidence 36899999999999999998 999999999998764
No 10
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A*
Probab=100.00 E-value=1.2e-61 Score=448.31 Aligned_cols=215 Identities=28% Similarity=0.465 Sum_probs=184.4
Q ss_pred Cccc---cc-cceeeeecCcCccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCcceEEeccceEEeeeCCE
Q psy4727 9 SPID---MS-NNSILNSYGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKLSRPKKRTQTLLFSRNAVICQRDGE 84 (253)
Q Consensus 9 ~~~~---~~-~t~tTIGYG~~~p~~~c~~~~~l~~~q~~~G~l~~a~~~GlvfaKfSrP~~r~~tI~FS~~AVI~~~dG~ 84 (253)
+..| .| +|+||||||.++|. |+.|.+++++|+++|+++.|+++|+++++|++|++| +.||++||||++||+
T Consensus 96 s~~~a~yfs~vT~tTVGYGDi~P~--t~~gr~~~~~~~l~G~~~~a~~ig~i~~~~~~~~~r---~~fs~~~VI~~~~g~ 170 (333)
T 1p7b_A 96 GFVGAFFFSVETLATVGYGDMHPQ--TVYAHAIATLEIFVGMSGIALSTGLVFARFARPRAK---IMFARHAIVRPFNGR 170 (333)
T ss_dssp STHHHHHHHTTTTTTCCCSCCCCC--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCC---CEECSCEEEEECSSS
T ss_pred cHHHhHhhhheeeeecCCCCCcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhCCCEEEcCCCCc
Confidence 4455 67 99999999999885 789999999999999999999999999999999999 999999999999999
Q ss_pred EEEEEEEeeCCcCeEEEEEEEEEEEEEeeeCCCeEEeeEEeeeeeecCCCCceeeeecceEEEEEcCCCCCCCCCCHhhh
Q psy4727 85 LCLMFRVGDMRRSHIIEAHVRAQLIRKKVTLEGELLPFYQQELKVGGDGIEDKIFFIWPTTIVHKINPMSPLYTLSAADM 164 (253)
Q Consensus 85 ~~LmfRv~N~r~~~liea~vr~~l~~~~~t~eGe~~~~~~~~l~l~~d~~~~~~~l~~p~tv~H~IDe~SPL~~~t~~~L 164 (253)
+|||||++|+|++++++++||+++++.++++|||.++. ..+|++.++ +.++|.+||||+|+|||+||||++++++|
T Consensus 171 ~~L~fRv~n~r~~~li~a~vr~~li~~~~t~eGe~~~~-~~~l~l~~~---~~~~l~~~~tv~H~Id~~SPL~~~s~~~L 246 (333)
T 1p7b_A 171 MTLMVRAANARQNVIAEARAKMRLMRREHSSEGYSLMK-IHDLKLVRN---EHPIFLLGWNMMHVIDESSPLFGETPESL 246 (333)
T ss_dssp EEEEEEEECCSSCCCCEEEEEEECC----------CCE-ECCSGGGTT---CSCCCCSSEEEEEECSTTSTTSSCCHHHH
T ss_pred ceEEEEecccccceEEeeEEEEEEEeeeecCCCcEEee-eeecccccC---CCeeEeeeEEEEEeCCCCCCccccCHhHH
Confidence 99999999999999999999999999999999999865 578888754 46789999999999999999999999999
Q ss_pred ccCCeEEEEEEEEEeccccceEEEEEeeeCCceecCCeeeeeeeeecCCCeEEEecCCCCceeeecCCCC
Q psy4727 165 LRERFEIVVILEGVIESTGMTTQARSSYLPNEILWGHRFETLVSFKKETGEHEVNYGLFNNTYEVHTPLC 234 (253)
Q Consensus 165 ~~~~~EiiV~l~G~de~t~~tv~aR~SY~~~eI~wg~rF~~~v~~~~~~g~~~iD~~~F~~~~~~~~p~~ 234 (253)
.++++||+|+++|+||+|||++|||+||.++||+|||||+||+.. ++|+|.|||++||+++|+++|.+
T Consensus 247 ~~~~~eivV~l~G~de~t~~t~qar~sY~~~eI~wg~rF~~i~~~--~~g~~~vD~~~f~~~~~~~~~~~ 314 (333)
T 1p7b_A 247 AEGRAMLLVMIEGSDETTAQVMQARHAWEHDDIRWHHRYVDLMSD--VDGMTHIDYTRFNDTEPVEPPGA 314 (333)
T ss_dssp HHTTCEEEEEEEEEETTTTEEEEEEEEEEGGGEEETCCBCCCC--------CCCCCTTSSCBCCC-----
T ss_pred hcCCEEEEEEEEEEecccCceEEEEEEechHHeeeCCEechheEe--CCCcEEEEhHHcCCceecCCccc
Confidence 999999999999999999999999999999999999999999983 48999999999999999999988
No 11
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A
Probab=98.04 E-value=1.7e-06 Score=66.25 Aligned_cols=56 Identities=16% Similarity=0.159 Sum_probs=48.8
Q ss_pred Cccc---cc-cceeeeecCcCccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCC
Q psy4727 9 SPID---MS-NNSILNSYGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKLSRPKKR 66 (253)
Q Consensus 9 ~~~~---~~-~t~tTIGYG~~~p~~~c~~~~~l~~~q~~~G~l~~a~~~GlvfaKfSrP~~r 66 (253)
+..| .| .|.+|||||...|. ++.+-+++.+++++|+++.++.+|.+.+.+.+..+|
T Consensus 40 ~~~~a~y~~~~T~tTvGyGDi~P~--t~~gr~~~~~~~l~G~~~~~~~~~~i~~~~~~~~~~ 99 (103)
T 2k1e_A 40 SYPDAIWWSVETATTVGYGDRYPV--TEEGRKVAEQVMKAGIEVFALVTAALATDFVRREEE 99 (103)
T ss_dssp CGGGTTTTTTGGGGCCSCCSSCCC--SSSCTHHHHHHHHHHHHHHHHTHHHHHTTGGGHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCCCC--ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456 56 99999999999986 457899999999999999999999999999876654
No 12
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=97.84 E-value=1.4e-05 Score=65.83 Aligned_cols=52 Identities=10% Similarity=0.083 Sum_probs=47.0
Q ss_pred cc-cceeeeecCcCccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCC
Q psy4727 13 MS-NNSILNSYGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKLSRPKKR 66 (253)
Q Consensus 13 ~~-~t~tTIGYG~~~p~~~c~~~~~l~~~q~~~G~l~~a~~~GlvfaKfSrP~~r 66 (253)
.| .|.||||||...|. .+.+-+++.+++++|+.+.++.+|.+.+.+++..++
T Consensus 91 ~s~vTltTVGYGDi~P~--t~~gr~~~~~~~l~Gv~~~a~~~~~i~~~~~~~~~~ 143 (155)
T 2a9h_A 91 WSVETATTVGYGDLYPV--TLWGRCVAVVVMVAGITSYGLVFAAVATWFVGREQE 143 (155)
T ss_dssp HHHHHHTTCCCSSSCCC--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCC-
T ss_pred eeeeeeecccCCCCCCC--ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56 89999999999987 468999999999999999999999999999988765
No 13
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...
Probab=97.64 E-value=1.6e-05 Score=62.65 Aligned_cols=52 Identities=6% Similarity=0.084 Sum_probs=46.2
Q ss_pred cc-cceeeeecCcCccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCC
Q psy4727 13 MS-NNSILNSYGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKLSRPKKR 66 (253)
Q Consensus 13 ~~-~t~tTIGYG~~~p~~~c~~~~~l~~~q~~~G~l~~a~~~GlvfaKfSrP~~r 66 (253)
.| .|.||||||...|.+ +.+-+++.+.+++|+.+.++.+|.+.+.+++..++
T Consensus 68 ~~~~T~tTvGyGDi~P~t--~~gr~~~~~~~~~Gi~~~~~~~~~i~~~~~~~~~~ 120 (122)
T 2ih3_C 68 WACETATTVAYGDLYPVT--LWGRLVAVVVMVAGITSFGLVTAALATWFVGREQE 120 (122)
T ss_dssp HHHHHHTTCCCSSSCCCS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred heeeeeeeeecCCCCCCC--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56 899999999999874 68899999999999999999999999998876543
No 14
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=97.54 E-value=3.5e-05 Score=61.64 Aligned_cols=51 Identities=8% Similarity=0.086 Sum_probs=44.8
Q ss_pred cc-cceeeeecCcCccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcC
Q psy4727 13 MS-NNSILNSYGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKLSRPKK 65 (253)
Q Consensus 13 ~~-~t~tTIGYG~~~p~~~c~~~~~l~~~q~~~G~l~~a~~~GlvfaKfSrP~~ 65 (253)
.| .|.||||||..+|.+ +.+-+++.+.+++|+.+.++++|.+...+.+..+
T Consensus 47 f~~~T~tTvGyGd~~P~t--~~~r~~~~~~~~~G~~~~~~~~~~i~~~~~~~~~ 98 (139)
T 3eff_K 47 WSVETATTVGYGDLYPVT--LWGRLVAVVVMVAGITSFGLVTAALATWFVGREQ 98 (139)
T ss_dssp HHHHHHTTCCCSSSCCCS--SHHHHHHHHHHHHHHHHHHHHHHHHTTTTTHHHH
T ss_pred HHheeeecccCCCCcCCC--cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55 999999999999975 4789999999999999999999999888866543
No 15
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=97.51 E-value=9.8e-06 Score=67.05 Aligned_cols=56 Identities=7% Similarity=0.065 Sum_probs=48.1
Q ss_pred Cccc---cc-cceeeeecCcCccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCC
Q psy4727 9 SPID---MS-NNSILNSYGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKLSRPKKR 66 (253)
Q Consensus 9 ~~~~---~~-~t~tTIGYG~~~p~~~c~~~~~l~~~q~~~G~l~~a~~~GlvfaKfSrP~~r 66 (253)
+.+| .| .|.||||||..+|.+ +.+-+++.+.+++|+.+.++++|.+.+.+.+..++
T Consensus 67 ~~~~a~yf~~~T~tTvGyGDi~P~t--~~~r~~~~~~~l~G~~~~~~~~~~i~~~~~~~~~~ 126 (166)
T 3pjs_K 67 TYPRALWWSVETATTVGYGDLYPVT--LWGRLVAVVVMVAGITSFGLVTAALATWFVGQEQQ 126 (166)
T ss_dssp STTTTTTTTHHHHSCCCCSSSCCCS--STTTTTTHHHHHHHHHHHHHHHTTSSSSSSSSHHH
T ss_pred CHHHHHHHHHHHhccccCCCCCCCC--HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456 66 999999999999975 47789999999999999999999999998876644
No 16
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A
Probab=97.43 E-value=5.4e-05 Score=57.32 Aligned_cols=56 Identities=16% Similarity=0.147 Sum_probs=47.6
Q ss_pred CCccc---cc-cceeeeecCcCccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcC
Q psy4727 8 SSPID---MS-NNSILNSYGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKLSRPKK 65 (253)
Q Consensus 8 ~~~~~---~~-~t~tTIGYG~~~p~~~c~~~~~l~~~q~~~G~l~~a~~~GlvfaKfSrP~~ 65 (253)
-+.+| .+ .|.+|||||...|.+ +.+-+++.+.+++|+.+.+.++|.+-.++..++-
T Consensus 31 ~~~~~a~yf~~~T~tTvGyGdi~P~t--~~gr~~~~~~~~~G~~~~~~~i~~i~~~~~~~~~ 90 (97)
T 3ouf_A 31 LRPIDALYFSVVTLTTVGYGDFSPQT--DFGKIFTILYIFIGIGLVFGFIHKLAVNVQLPSI 90 (97)
T ss_dssp CCHHHHHHHHHHHHTTCCCCSSCCCS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred CCHHHHHHHHHHHHHccCCCCCCCCC--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 34455 45 899999999999864 5889999999999999999999999999876653
No 17
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=97.42 E-value=0.0001 Score=59.09 Aligned_cols=52 Identities=10% Similarity=0.157 Sum_probs=45.3
Q ss_pred cc-cceeeeecCcCccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCC
Q psy4727 13 MS-NNSILNSYGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKLSRPKKR 66 (253)
Q Consensus 13 ~~-~t~tTIGYG~~~p~~~c~~~~~l~~~q~~~G~l~~a~~~GlvfaKfSrP~~r 66 (253)
.+ .|.||||||..+|. .+.+-+++.+.+++|+.+.++++|.+-..+..-..+
T Consensus 50 ~~~~T~tTvGyGDi~P~--t~~gr~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~ 102 (137)
T 4h33_A 50 WAIVTATTVGYGDIVPV--TPIGRILASIMMLFGIAFIGMITSTITNFFRCKKPT 102 (137)
T ss_dssp HHHHHHTTCCCSSSCCC--SHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTTTC
T ss_pred HHHHHHHcccCCCCCCC--CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56 89999999999987 468899999999999999999999998888654443
No 18
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A
Probab=97.37 E-value=0.00016 Score=56.23 Aligned_cols=56 Identities=14% Similarity=0.085 Sum_probs=46.1
Q ss_pred CCccc---cc-cceeeeecCcCccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcC
Q psy4727 8 SSPID---MS-NNSILNSYGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKLSRPKK 65 (253)
Q Consensus 8 ~~~~~---~~-~t~tTIGYG~~~p~~~c~~~~~l~~~q~~~G~l~~a~~~GlvfaKfSrP~~ 65 (253)
.+.+| .+ .|.||||||...|. .+.+-+++.+.+++|+.+.+..+|.+.++++..+.
T Consensus 48 ~~~~~a~y~~~~T~tTvGyGdi~P~--t~~gr~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~ 107 (114)
T 2q67_A 48 LRPIDALYFSVVTLTTVGAGNFSPQ--TDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLPSI 107 (114)
T ss_dssp CCHHHHHHHHHHHHTSCCCSSCCCC--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---
T ss_pred CCHHHHHHHHHHHhcceeCCCCccC--CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455 55 89999999999986 46889999999999999999999999999866554
No 19
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A
Probab=97.25 E-value=0.00026 Score=51.82 Aligned_cols=46 Identities=17% Similarity=0.269 Sum_probs=40.5
Q ss_pred cc-cceeeeecCcCccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4727 13 MS-NNSILNSYGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKL 60 (253)
Q Consensus 13 ~~-~t~tTIGYG~~~p~~~c~~~~~l~~~q~~~G~l~~a~~~GlvfaKf 60 (253)
.| .|.+|||||..+|.+ +.+-+++.+.+++|+.+.++.+|.+-..+
T Consensus 35 f~~~T~tTvGyGdi~P~t--~~~r~~~~~~~~~G~~~~~~~~~~i~~~l 81 (82)
T 3ldc_A 35 WTFVTIATVGYGDYSPHT--PLGMYFTCTLIVLGIGTFAVAVERLLEFL 81 (82)
T ss_dssp HHHHHHTTCCCCSSCCCS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcccCCCCCCCCC--ccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45 899999999999874 68899999999999999999999887654
No 20
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=97.23 E-value=0.00017 Score=61.42 Aligned_cols=48 Identities=15% Similarity=0.209 Sum_probs=43.7
Q ss_pred cc-cceeeeecCcCccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy4727 13 MS-NNSILNSYGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKLSR 62 (253)
Q Consensus 13 ~~-~t~tTIGYG~~~p~~~c~~~~~l~~~q~~~G~l~~a~~~GlvfaKfSr 62 (253)
.+ .|.||||||..+|. .+.+-+++.+.+++|+.+.|+.+|.+.+.+++
T Consensus 172 ~~~~t~tTvGyGdi~P~--t~~~~~~~~~~~~~G~~~~~~~i~~i~~~~~~ 220 (223)
T 1orq_C 172 WAVVTATTVGYGDVVPA--TPIGKVIGIAVMLTGISALTLLIGTVSNMFQK 220 (223)
T ss_dssp HHHHHHTTCCCCSSCCC--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHhHHhccCCCCCCCC--CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45 89999999999886 57899999999999999999999999998875
No 21
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=96.72 E-value=0.001 Score=53.69 Aligned_cols=49 Identities=12% Similarity=0.040 Sum_probs=41.4
Q ss_pred CCccc---cc-cceeeeecCcCccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4727 8 SSPID---MS-NNSILNSYGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFA 58 (253)
Q Consensus 8 ~~~~~---~~-~t~tTIGYG~~~p~~~c~~~~~l~~~q~~~G~l~~a~~~Glvfa 58 (253)
-+.+| .| .|.||||||..+|.+ +.+-+++.+.+++|+.+.+.++|.+..
T Consensus 51 ~~~~~a~y~~~~t~tTvGyGd~~p~t--~~~r~~~~~~~~~g~~~~~~~~~~~~~ 103 (148)
T 3vou_A 51 LRPLDALYFSVVTLTTVGDGNFSPQT--DFGKVFTILYIFIGIGLVFGFIHKLAV 103 (148)
T ss_dssp CCHHHHHHHHHHHHTTCCCSSCCCCS--HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHccCCCCCCCCC--ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455 45 899999999999864 688999999999999999999887765
No 22
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=96.67 E-value=0.001 Score=60.23 Aligned_cols=52 Identities=13% Similarity=0.141 Sum_probs=45.5
Q ss_pred cc-cceeeeecCcCccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCC
Q psy4727 13 MS-NNSILNSYGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKLSRPKKR 66 (253)
Q Consensus 13 ~~-~t~tTIGYG~~~p~~~c~~~~~l~~~q~~~G~l~~a~~~GlvfaKfSrP~~r 66 (253)
.+ .|.||||||..+|. ++.+.+++.+.+++|+++.++.+|.+...+.+-.+|
T Consensus 168 ~~~~t~ttvGygd~~p~--t~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~ 220 (355)
T 3beh_A 168 WAVVTLSTTGYGDTIPQ--SFAGRVLAGAVMMSGIGIFGLWAGILATGFYQEVRR 220 (355)
T ss_dssp HHHHHHTTCCCSSSCCC--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhheeecCCCCCCCC--ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45 89999999999886 578999999999999999999999999988765443
No 23
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=96.10 E-value=0.00059 Score=61.38 Aligned_cols=57 Identities=14% Similarity=0.118 Sum_probs=45.3
Q ss_pred CCCCccc---cc-cceeeeecCcCccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q psy4727 6 PSSSPID---MS-NNSILNSYGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKLSRPK 64 (253)
Q Consensus 6 ~~~~~~~---~~-~t~tTIGYG~~~p~~~c~~~~~l~~~q~~~G~l~~a~~~GlvfaKfSrP~ 64 (253)
...|.+| .+ .|.||||||..+|.+ +.+-+++.+.+++|+.+.++++|.+...+.+..
T Consensus 42 e~~~~~~a~y~~~~t~tTvGyGd~~p~t--~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 102 (336)
T 1lnq_A 42 EGESWTVSLYWTFVTIATVGYGDYSPST--PLGMYFTVTLIVLGIGTFAVAVERLLEFLINRE 102 (336)
T ss_dssp SSCCSSTTHHHHHHHHTTCCCSSCCCCC--SSHHHHHTHHHHTTSTTTTTHHHHHTTTC----
T ss_pred hCCCHHHHHHHHHHHhhcccCCCCCCCC--cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345566 55 899999999999874 578999999999999999999999998887764
No 24
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=96.09 E-value=0.0031 Score=57.35 Aligned_cols=48 Identities=15% Similarity=0.202 Sum_probs=41.2
Q ss_pred cc-cceeeeecCcCccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy4727 13 MS-NNSILNSYGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKLSR 62 (253)
Q Consensus 13 ~~-~t~tTIGYG~~~p~~~c~~~~~l~~~q~~~G~l~~a~~~GlvfaKfSr 62 (253)
.+ +|.||||||..+|.+ +.|-+++++-+++|+.+.+++++.+-.++++
T Consensus 122 f~~~t~tTvGYGdi~P~T--~~gk~~~i~~~l~Gi~~~~~~~~~i~~~l~~ 170 (309)
T 3um7_A 122 FSGTIITTIGYGNVALRT--DAGRLFCIFYALVGIPLFGILLAGVGDRLGS 170 (309)
T ss_dssp HHHHHHTSCCCCSSCCCS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhheeeeecccCCCCCCC--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45 899999999999975 5899999999999999999998876655543
No 25
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=95.88 E-value=0.0032 Score=60.61 Aligned_cols=45 Identities=9% Similarity=0.188 Sum_probs=38.6
Q ss_pred Cccc---cc-cceeeeecCcCccCCCChhHHHHHHHHHHHHHHHHHHHHHH
Q psy4727 9 SPID---MS-NNSILNSYGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGI 55 (253)
Q Consensus 9 ~~~~---~~-~t~tTIGYG~~~p~~~c~~~~~l~~~q~~~G~l~~a~~~Gl 55 (253)
|.+| .+ .|.||||||...|. .+.+-+++.+.+++|+.+.++++|.
T Consensus 51 ~~~~~~y~~~~t~tTvGygd~~p~--~~~~~~~~~~~~~~g~~~~~~~~~~ 99 (565)
T 4gx0_A 51 SFMAGIYWTITVMTTLGFGDITFE--SDAGYLFASIVTVSGVIFLDIILPF 99 (565)
T ss_dssp CHHHHHHHHHHHHTTCCCCSSCCC--SHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred chhhhhheeeeeeeeecCCCcCCC--CccHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566 56 99999999999886 4688999999999999999988877
No 26
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=95.76 E-value=0.0043 Score=55.65 Aligned_cols=50 Identities=10% Similarity=0.166 Sum_probs=43.5
Q ss_pred cc-cceeeeecCcCccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q psy4727 13 MS-NNSILNSYGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKLSRPK 64 (253)
Q Consensus 13 ~~-~t~tTIGYG~~~p~~~c~~~~~l~~~q~~~G~l~~a~~~GlvfaKfSrP~ 64 (253)
.+ .|.||||||..+|.+ +.|-+++.+-+++|+.+.+++++.+..++....
T Consensus 100 f~~~t~tTvGyGd~~P~T--~~Gk~f~~~~~l~Gi~~~~~~~~~~~~~l~~~~ 150 (280)
T 3ukm_A 100 FASTVLSTTGYGHTVPLS--DGGKAFCIIYSVIGIPFTLLFLTAVVQRITVHV 150 (280)
T ss_dssp HHHHHHTTCCCCSSCCCS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred heeeeeeccccCCcCCCC--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55 899999999999975 689999999999999999999998877776544
No 27
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=95.70 E-value=0.0044 Score=59.75 Aligned_cols=67 Identities=15% Similarity=0.085 Sum_probs=42.9
Q ss_pred cceeeeecCcCccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCC---cceEEeccceEEeeeCC
Q psy4727 15 NNSILNSYGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKLSRPKKR---TQTLLFSRNAVICQRDG 83 (253)
Q Consensus 15 ~t~tTIGYG~~~p~~~c~~~~~l~~~q~~~G~l~~a~~~GlvfaKfSrP~~r---~~tI~FS~~AVI~~~dG 83 (253)
.|.||||||...|. .+.|.+++++-+++|+++.++.+|++...|++-.++ .+.-...++.++|.++.
T Consensus 385 vT~TTvGYGDi~P~--t~~gr~f~~~~~l~G~~~l~l~iavI~~~f~~~~~~~~~~~~~~l~~h~iicg~~~ 454 (514)
T 2r9r_B 385 VSMTTVGYGDMVPT--TIGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRETEGEEQAQYLQVTSSPKIP 454 (514)
T ss_dssp HHHTTCCCSSSCCC--SHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHC------------------
T ss_pred eEEEecccCCCCCC--CcchHhhehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCEEEeCCCc
Confidence 89999999999886 467889999999999999999999998877754322 11234556666665543
No 28
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=93.43 E-value=0.05 Score=49.34 Aligned_cols=54 Identities=11% Similarity=0.078 Sum_probs=41.2
Q ss_pred cc-cceeeeecCcCccCCCC----hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCC
Q psy4727 13 MS-NNSILNSYGAKQVTEEC----PEAIFILCLQSIVGVMIQAFMVGIVFAKLSRPKKR 66 (253)
Q Consensus 13 ~~-~t~tTIGYG~~~p~~~c----~~~~~l~~~q~~~G~l~~a~~~GlvfaKfSrP~~r 66 (253)
.+ .|.||||||...|.++- |...+++.+-+++|+.+.+++++.+-..+..-.+|
T Consensus 231 ~~~vTltTvGyGd~~p~t~~g~~~~~y~~~~~~~il~Gl~~~a~~~~~i~~~~~~~~~r 289 (309)
T 3um7_A 231 FVIVTLTTVGFGDYVAGADPRQDSPAYQPLVWFWILLGLAYFASVLTTIGNWLRVVSRR 289 (309)
T ss_dssp HHHHHHTTCCCSSCCTTCCTTCCCSTHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTT
T ss_pred HHHhheeccccCCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45 89999999999987541 22236889999999999999999876655544444
No 29
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=92.73 E-value=0.091 Score=46.96 Aligned_cols=44 Identities=7% Similarity=-0.039 Sum_probs=36.2
Q ss_pred cc-cceeeeecCcCccCCCCh-----hHHHHHHHHHHHHHHHHHHHHHHH
Q psy4727 13 MS-NNSILNSYGAKQVTEECP-----EAIFILCLQSIVGVMIQAFMVGIV 56 (253)
Q Consensus 13 ~~-~t~tTIGYG~~~p~~~c~-----~~~~l~~~q~~~G~l~~a~~~Glv 56 (253)
.+ .|.||||||...|.++.. .+-+++.+-+++|+.+.+.+++.+
T Consensus 208 ~~~iTltTvGyGD~~p~t~~~~~~~~l~r~~~~~~il~Gl~~~~~~~~~i 257 (280)
T 3ukm_A 208 FCFISLSTIGLGDYVPGEGYNQKFRELYKIGITCYLLLGLIAMLVVLETF 257 (280)
T ss_dssp HHHHHHTTCCCCSCCSSCSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred heeeeeecccCCCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55 899999999999987531 457889999999999998888764
No 30
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=80.49 E-value=0.58 Score=40.70 Aligned_cols=52 Identities=15% Similarity=0.245 Sum_probs=37.6
Q ss_pred cceeeeecC-cC-ccCCC-Chh-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCC
Q psy4727 15 NNSILNSYG-AK-QVTEE-CPE-AIFILCLQSIVGVMIQAFMVGIVFAKLSRPKKR 66 (253)
Q Consensus 15 ~t~tTIGYG-~~-~p~~~-c~~-~~~l~~~q~~~G~l~~a~~~GlvfaKfSrP~~r 66 (253)
+|.||+||| .. +|... .|+ +.+++++-++.|+++.++.+|++...|++..+.
T Consensus 190 ~~~T~~g~~~di~~p~~~~~~~~~~~f~~~~~i~~~~~lnl~~aii~~~f~~~~~~ 245 (285)
T 3rvy_A 190 QVMTLESWSMGIVRPLMEVYPYAWVFFIPFIFVVTFVMINLVVAICVDAMAILNQK 245 (285)
T ss_dssp HHHTTTTCCCCCHHHHHTTCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHhCCCcHHHHHHHHHcCChHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999 65 35432 233 368889999999999999999999999887665
No 31
>2jz2_A SSL0352 protein; SH3-like, synechocystis SP. PCC 6803, targe PSI, protein structure initiative, northeast structural GEN consortium, NESG; NMR {Synechocystis SP} PDB: 3c4s_A
Probab=28.53 E-value=21 Score=24.69 Aligned_cols=37 Identities=19% Similarity=0.216 Sum_probs=22.9
Q ss_pred ecceEEEEEcCCCCCCCCCCHhhhccCCeEEEEEEEE
Q psy4727 141 IWPTTIVHKINPMSPLYTLSAADMLRERFEIVVILEG 177 (253)
Q Consensus 141 ~~p~tv~H~IDe~SPL~~~t~~~L~~~~~EiiV~l~G 177 (253)
.+|-+.+-++|++||.|+..--==+-.|--.-|+|+|
T Consensus 2 ilPG~~V~V~np~~~Yy~y~G~VQRvsdgkaaVLFEG 38 (66)
T 2jz2_A 2 IFPGATVRVTNVDDTYYRFEGLVQRVSDGKAAVLFEN 38 (66)
T ss_dssp CCTTCEEEECCTTSTTBTCEEEEEEEETTEEEEEEES
T ss_pred ccCCCEEEEeCCCCcccceeEEEEEecCCcEEEEecC
Confidence 4577788899999999998321001123334556665
Done!