RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy4727
         (253 letters)



>3sya_A G protein-activated inward rectifier potassium CH; ION channel,
           potassium channel, inward rectification, sodium PIP2
           binding, G protein binding; HET: PIO; 2.98A {Mus
           musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*
          Length = 340

 Score =  277 bits (709), Expect = 2e-93
 Identities = 113/221 (51%), Positives = 162/221 (73%), Gaps = 2/221 (0%)

Query: 22  YGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKLSRPKKRTQTLLFSRNAVICQR 81
           YG + +T++CPE I +L +QS++G ++ AFMVG +F K+S+PKKR +TL+FS +AVI  R
Sbjct: 108 YGYRVITDKCPEGIILLLIQSVLGSIVNAFMVGCMFVKISQPKKRAETLVFSTHAVISMR 167

Query: 82  DGELCLMFRVGDMRRSHIIEAHVRAQLIRKKVTLEGELLPFYQQELKVGGDGIEDKIFFI 141
           DG+LCLMFRVGD+R SHI+EA +RA+LI+ K T EGE +P  Q ++ VG    +D++F +
Sbjct: 168 DGKLCLMFRVGDLRNSHIVEASIRAKLIKSKQTSEGEFIPLNQTDINVGYYTGDDRLFLV 227

Query: 142 WPTTIVHKINPMSPLYTLSAADMLRERFEIVVILEGVIESTGMTTQARSSYLPNEILWGH 201
            P  I H+IN  SP + +S A + +E  EIVVILEG++E+TGMT QARSSY+ +EILWG+
Sbjct: 228 SPLIISHEINQQSPFWEISKAQLPKEELEIVVILEGMVEATGMTCQARSSYITSEILWGY 287

Query: 202 RFETLVSFKKETGEHEVNYGLFNNTYEVHTPLCSAQALDQL 242
           RF  +++ +   G +EV+Y  F+ TYE  TP  SA+ L +L
Sbjct: 288 RFTPVLTLED--GFYEVDYNSFHETYETSTPSLSAKELAEL 326


>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid,
           receptor, metal transport; HET: P8P; 2.45A {Gallus
           gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*
          Length = 343

 Score =  275 bits (704), Expect = 1e-92
 Identities = 125/233 (53%), Positives = 173/233 (74%), Gaps = 3/233 (1%)

Query: 21  SYGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKLSRPKKRTQTLLFSRNAVICQ 80
            YG + VTEECP A+F++ +QSIVG +I +FM+G + AK++RPKKR QTLLFS NAV+  
Sbjct: 110 GYGFRCVTEECPLAVFMVVVQSIVGCIIDSFMIGAIMAKMARPKKRAQTLLFSHNAVVAM 169

Query: 81  RDGELCLMFRVGDMRRSHIIEAHVRAQLIRKKVTLEGELLPFYQQELKVGGDGIEDKIFF 140
           RDG+LCLM+RVG++R+SHI+EAHVRAQLI+ ++T EGE +P  Q ++ VG D   D+IF 
Sbjct: 170 RDGKLCLMWRVGNLRKSHIVEAHVRAQLIKPRITEEGEYIPLDQIDIDVGFDKGLDRIFL 229

Query: 141 IWPTTIVHKINPMSPLYTLSAADMLRERFEIVVILEGVIESTGMTTQARSSYLPNEILWG 200
           + P TI+H+IN  SPL+ +S  D+  + FEIVVILEG++E+T MTTQARSSYL +EILWG
Sbjct: 230 VSPITILHEINEDSPLFGISRQDLETDDFEIVVILEGMVEATAMTTQARSSYLASEILWG 289

Query: 201 HRFETLVSFKKETGEHEVNYGLFNNTYEVH-TPLCSAQALDQLLAIHGTTKSN 252
           HRFE ++  +K   +++V+Y  F+ TYEV  TP CSA+ L +   +   +   
Sbjct: 290 HRFEPVLFEEK--NQYKVDYSHFHKTYEVPSTPRCSAKDLVENKFLLSNSLEV 340


>2xky_I Inward rectifier potassium channel 2; ION channel, metal transport,
           membrane protein; 17.20A {Mus musculus}
          Length = 309

 Score =  267 bits (683), Expect = 8e-90
 Identities = 103/233 (44%), Positives = 149/233 (63%), Gaps = 13/233 (5%)

Query: 13  MSNNSILNSYGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKLS---RPKKRTQT 69
           ++  ++ N +G  +      +       Q     + +     + F  +    +   R +T
Sbjct: 21  LATMAVANGFGNGKSKVHTRQ-------QCRSRFVKKDGHCNVQFINVGEKGQRGGRNET 73

Query: 70  LLFSRNAVICQRDGELCLMFRVGDMRRSHIIEAHVRAQLIRKKVTLEGELLPFYQQELKV 129
           L+FS NAVI  RDG+LCLM+RVG++R+SH++EAHVRAQL++ ++T EGE +P  Q ++ V
Sbjct: 74  LVFSHNAVIAMRDGKLCLMWRVGNLRKSHLVEAHVRAQLLKSRITSEGEYIPLDQIDINV 133

Query: 130 GGDGIEDKIFFIWPTTIVHKINPMSPLYTLSAADMLRERFEIVVILEGVIESTGMTTQAR 189
           G D   D+IF + P TIVH+I+  SPLY LS  D+    FEIVVILEG++E+T MTTQ R
Sbjct: 134 GFDSGIDRIFLVSPITIVHEIDEDSPLYDLSKQDIDNADFEIVVILEGMVEATAMTTQCR 193

Query: 190 SSYLPNEILWGHRFETLVSFKKETGEHEVNYGLFNNTYEVH-TPLCSAQALDQ 241
           SSYL NEILWGHR+E ++   +E   ++V+Y  F+ TYEV  TPLCSA+ L +
Sbjct: 194 SSYLANEILWGHRYEPVLF--EEKHYYKVDYSRFHKTYEVPNTPLCSARDLAE 244


>2gix_A Inward rectifier potassium channel 2; cytoplasmic domains of
           KIR2.1, andersen'S mutation, metal transport; 2.02A {Mus
           musculus}
          Length = 208

 Score =  254 bits (651), Expect = 2e-86
 Identities = 98/193 (50%), Positives = 136/193 (70%), Gaps = 3/193 (1%)

Query: 50  AFMVGIVFAKLSRPKKRTQTLLFSRNAVICQRDGELCLMFRVGDMRRSHIIEAHVRAQLI 109
                     ++  +KR +TL+FS NAVI  RDG+LCLM+RVG++++SH++EAHVRAQL+
Sbjct: 10  KKDGHCNVQFINVGEKRNETLVFSHNAVIAMRDGKLCLMWRVGNLQKSHLVEAHVRAQLL 69

Query: 110 RKKVTLEGELLPFYQQELKVGGDGIEDKIFFIWPTTIVHKINPMSPLYTLSAADMLRERF 169
           + ++T EGE +P  Q ++ VG D   D+IF + P TIVH+I+  SPLY LS  D+    F
Sbjct: 70  KSRITSEGEYIPLDQIDINVGFDSGIDRIFLVSPITIVHEIDEDSPLYDLSKQDIDNADF 129

Query: 170 EIVVILEGVIESTGMTTQARSSYLPNEILWGHRFETLVSFKKETGEHEVNYGLFNNTYEV 229
           EIVVILEG++E+T MT Q RSSYL NEILWGHR+E ++  +K    ++V+Y  F+ TYEV
Sbjct: 130 EIVVILEGMVEATAMTKQCRSSYLANEILWGHRYEPVLFEEK--HYYKVDYSRFHKTYEV 187

Query: 230 H-TPLCSAQALDQ 241
             TPLCSA+ L +
Sbjct: 188 PNTPLCSARDLAE 200


>1n9p_A GIRK1, G protein-activated inward rectifier potassium CH; beta
           barrel, cytoplasmic domain, inward rectifier potassium
           channel, metal transport; 1.80A {Mus musculus} SCOP:
           b.1.18.16 PDB: 3k6n_A 1u4e_A
          Length = 207

 Score =  252 bits (646), Expect = 1e-85
 Identities = 87/200 (43%), Positives = 129/200 (64%), Gaps = 4/200 (2%)

Query: 46  VMIQAFMVGIVFAKLSRPKKRTQTLLFSRNAVICQRDGELCLMFRVGDMRRSHIIEAHVR 105
            + +     +    L    +R +TL+FS +AVI  RDG+L LMFRVG++R SH++ A +R
Sbjct: 8   FVDKNGRCNVQHGNL--GSERAETLMFSEHAVISMRDGKLTLMFRVGNLRNSHMVSAQIR 65

Query: 106 AQLIRKKVTLEGELLPFYQQELKVGGDGIEDKIFFIWPTTIVHKINPMSPLYTLSAADML 165
            +L++ + T EGE LP  Q EL VG     D++F + P TI H I+  SP Y LS   M 
Sbjct: 66  CKLLKSRQTPEGEFLPLDQLELDVGFSTGADQLFLVSPLTICHVIDAKSPFYDLSQRSMQ 125

Query: 166 RERFEIVVILEGVIESTGMTTQARSSYLPNEILWGHRFETLVSFKKETGEHEVNYGLFNN 225
            E+FE+VVILEG++E+TGMT QAR+SY  +E+LWGHRF  ++S ++  G  +V+Y  F+ 
Sbjct: 126 TEQFEVVVILEGIVETTGMTCQARTSYTEDEVLWGHRFFPVISLEE--GFFKVDYSQFHA 183

Query: 226 TYEVHTPLCSAQALDQLLAI 245
           T+EV TP  S +  +++L +
Sbjct: 184 TFEVPTPPYSVKEQEEMLLM 203


>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward
           rectifier, potassium channel selectivity filter, metal
           transport; HET: BNG; 2.20A {Burkholderia xenovorans}
          Length = 321

 Score =  256 bits (655), Expect = 2e-85
 Identities = 101/224 (45%), Positives = 146/224 (65%), Gaps = 4/224 (1%)

Query: 22  YGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKLSRPKKRTQTLLFSRNAVICQR 81
           YG   +  +   A +I  L+  VG+   A   G  F K+S+PKKR +TL+FS +AVI  R
Sbjct: 95  YGD--MHPQTVYAHWIATLEIFVGMSSIALATGCAFIKMSQPKKRAETLMFSEHAVISMR 152

Query: 82  DGELCLMFRVGDMRRSHIIEAHVRAQLIRKKVTLEGELLPFYQQELKVGGDGIEDKIFFI 141
           DG+L LMFRVG++R SH++ A +R +L++ + T EGE LP  Q EL VG     D++F +
Sbjct: 153 DGKLTLMFRVGNLRNSHMVSAQIRCKLLKSRQTPEGEFLPLDQLELDVGFSTGADQLFLV 212

Query: 142 WPTTIVHKINPMSPLYTLSAADMLRERFEIVVILEGVIESTGMTTQARSSYLPNEILWGH 201
            P TI H I+  SP Y LS   M  E+FE+VVILEG++E+TGMT QAR+SY  +E+LWGH
Sbjct: 213 SPLTICHVIDAKSPFYDLSQRSMQTEQFEVVVILEGIVETTGMTCQARTSYTEDEVLWGH 272

Query: 202 RFETLVSFKKETGEHEVNYGLFNNTYEVHTPLCSAQALDQLLAI 245
           RF  ++S ++  G  +V+Y  F+ T+EV TP  S +  +++L +
Sbjct: 273 RFFPVISLEE--GFFKVDYSQFHATFEVPTPPYSVKEQEEMLLM 314


>3agw_A KIR3.2, G protein-activated inward rectifier potassium CH;
           cytoplasmic assembly, ION channel, beta-barrel,
           transport PR; 2.20A {Mus musculus} PDB: 3at8_A 3at9_A
           3ata_A 3atb_A 3atd_A 3ate_A 3atf_A 2e4f_A 3auw_B 3auw_A
          Length = 208

 Score =  250 bits (639), Expect = 1e-84
 Identities = 91/191 (47%), Positives = 129/191 (67%), Gaps = 4/191 (2%)

Query: 54  GIVFAKLSRPKKRTQTLLFSRNAVICQRDGELCLMFRVGDMRRSHIIEAHVRAQLIRKKV 113
            +    +     R +TL+FS +AVI  RDG+LCLMFRVGD+R SHI+EA +RA+LI+ K 
Sbjct: 18  NVHHGNVREK--RAETLVFSTHAVISMRDGKLCLMFRVGDLRNSHIVEASIRAKLIKSKQ 75

Query: 114 TLEGELLPFYQQELKVGGDGIEDKIFFIWPTTIVHKINPMSPLYTLSAADMLRERFEIVV 173
           T EGE +P  Q ++ VG    +D++F + P  I H+IN  SP + +S A + +E  EIVV
Sbjct: 76  TSEGEFIPLNQTDINVGYYTGDDRLFLVSPLIISHEINQQSPFWEISKAQLPKEELEIVV 135

Query: 174 ILEGVIESTGMTTQARSSYLPNEILWGHRFETLVSFKKETGEHEVNYGLFNNTYEVHTPL 233
           ILEG++E+TGMT QARSSY+ +EILWG+RF  +++ +   G +EV+Y  F+ TYE  TP 
Sbjct: 136 ILEGMVEATGMTCQARSSYITSEILWGYRFTPVLTLED--GFYEVDYNSFHETYETSTPS 193

Query: 234 CSAQALDQLLA 244
            SA+ L +L  
Sbjct: 194 LSAKELAELAN 204


>1u4f_A Inward rectifier potassium channel 2; cytoplasmic domain, KIR2.1,
           IRK1, inwardly rectifying K channel, rectification,
           allergen; 2.41A {Mus musculus}
          Length = 270

 Score =  249 bits (636), Expect = 2e-83
 Identities = 100/187 (53%), Positives = 137/187 (73%), Gaps = 3/187 (1%)

Query: 56  VFAKLSRPKKRTQTLLFSRNAVICQRDGELCLMFRVGDMRRSHIIEAHVRAQLIRKKVTL 115
               ++  +KR +TL+FS NAVI  RDG+LCLM+RVG++R+SH++EAHVRAQL++ ++T 
Sbjct: 21  NVQFINVGEKRNETLVFSHNAVIAMRDGKLCLMWRVGNLRKSHLVEAHVRAQLLKSRITS 80

Query: 116 EGELLPFYQQELKVGGDGIEDKIFFIWPTTIVHKINPMSPLYTLSAADMLRERFEIVVIL 175
           EGE +P  Q ++ VG D   D+IF + P TIVH+I+  SPLY LS  D+    FEIVVIL
Sbjct: 81  EGEYIPLDQIDINVGFDSGIDRIFLVSPITIVHEIDEDSPLYDLSKQDIDNADFEIVVIL 140

Query: 176 EGVIESTGMTTQARSSYLPNEILWGHRFETLVSFKKETGEHEVNYGLFNNTYEVH-TPLC 234
           EG++E+T MTTQ RSSYL NEILWGHR+E ++  +K    ++V+Y  F+ TYEV  TPLC
Sbjct: 141 EGMVEATAMTTQCRSSYLANEILWGHRYEPVLFEEK--HYYKVDYSRFHKTYEVPNTPLC 198

Query: 235 SAQALDQ 241
           SA+ L +
Sbjct: 199 SARDLAE 205


>1p7b_A Integral membrane channel and cytosolic domains; transmembrane
           helices, ION conduction, immunoglobulin fold, assembly;
           3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16
           f.14.1.1 PDB: 2wll_B* 2wll_A*
          Length = 333

 Score =  235 bits (600), Expect = 6e-77
 Identities = 61/220 (27%), Positives = 108/220 (49%), Gaps = 11/220 (5%)

Query: 22  YGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKLSRPKKRTQTLLFSRNAVICQR 81
           YG          AI    L+  VG+   A   G+VFA+ +RP+ +     F+R+A++   
Sbjct: 113 YGDMHPQTVYAHAIA--TLEIFVGMSGIALSTGLVFARFARPRAKIM---FARHAIVRPF 167

Query: 82  DGELCLMFRVGDMRRSHIIEAHVRAQLIRKKVTLEGELLPFYQQELKVGGDGIEDKIFFI 141
           +G + LM R  + R++ I EA  + +L+R++ + EG  L     +LK+  +       F+
Sbjct: 168 NGRMTLMVRAANARQNVIAEARAKMRLMRREHSSEGYSLMKIH-DLKLVRNEH---PIFL 223

Query: 142 WPTTIVHKINPMSPLYTLSAADMLRERFEIVVILEGVIESTGMTTQARSSYLPNEILWGH 201
               ++H I+  SPL+  +   +   R  ++V++EG  E+T    QAR ++  ++I W H
Sbjct: 224 LGWNMMHVIDESSPLFGETPESLAEGRAMLLVMIEGSDETTAQVMQARHAWEHDDIRWHH 283

Query: 202 RFETLVSFKKETGEHEVNYGLFNNTYEVHTPLCSAQALDQ 241
           R+  L+S     G   ++Y  FN+T  V  P  +  A   
Sbjct: 284 RYVDLMS--DVDGMTHIDYTRFNDTEPVEPPGAAPDAQAF 321


>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION
           channel, inwardly rectifying channel, metal transport;
           2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16
           f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A*
           2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A*
           2x6a_A*
          Length = 301

 Score =  219 bits (560), Expect = 2e-71
 Identities = 52/211 (24%), Positives = 95/211 (45%), Gaps = 10/211 (4%)

Query: 22  YGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKLSRPKKRTQTLLFSRNAVICQR 81
           YG   +    P A  ++ L+++ G++  A    +++A+ +RP       LFS   VI   
Sbjct: 99  YGK--LIPIGPLANTLVTLEALCGMLGLAVAASLIYARFTRPTAGV---LFSSRMVISDF 153

Query: 82  DGELCLMFRVGDMRRSHIIEAHVRAQLIRKKVTLEGELLPFYQQELKVGGDGIEDKIFFI 141
           +G+  LM R+ ++R   IIEA V   L+R +++ EG +   +                F 
Sbjct: 154 EGKPTLMMRLANLRIEQIIEADVHLVLVRSEISQEGMVFRRFHDL----TLTRSRSPIFS 209

Query: 142 WPTTIVHKINPMSPLYTLSAADMLRERFEIVVILEGVIESTGMTTQARSSYLPNEILWGH 201
              T++H I+  SP+Y  +   +     E +V+  G  E+      AR +Y  +EI+WG 
Sbjct: 210 LSWTVMHPIDHHSPIYGETDETLRNSHSEFLVLFTGHHEAFAQNVHARHAYSCDEIIWGG 269

Query: 202 RFETLVSFKKETGEHEVNYGLFNNTYEVHTP 232
            F  + +   + G   ++ G F+   + H  
Sbjct: 270 HFVDVFTTLPD-GRRALDLGKFHEIAQHHHH 299


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 42.5 bits (99), Expect = 8e-05
 Identities = 36/272 (13%), Positives = 83/272 (30%), Gaps = 73/272 (26%)

Query: 30  ECPEAIFILCLQSIVGVMIQAFMVGIVFAKLSRPKKRTQTLLFSRNAVICQRDGELCLMF 89
             PE +  + LQ ++  +   +      +  S  K R  ++      ++  +  E CL+ 
Sbjct: 193 NSPETVLEM-LQKLLYQIDPNWTSRSDHS--SNIKLRIHSIQAELRRLLKSKPYENCLLV 249

Query: 90  RVGDMRRSHIIEA-HVRAQLI----------------RKKVTLEGELLPFYQQE-----L 127
            + +++ +    A ++  +++                   ++L+   +     E     L
Sbjct: 250 -LLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL 308

Query: 128 KVGGDGIED-----------KIFFIW------PTTI----------VHKINPMSPLYTLS 160
           K      +D           ++  I         T           +  I   S L  L 
Sbjct: 309 KYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS-LNVLE 367

Query: 161 AADMLRERFEIVVILEGVIESTGMTTQARSSYLPNEILWGHRFETLVSFKKETGEHEVNY 220
            A+  R+ F+ + +      S  + T      L   ++W    ++ V            Y
Sbjct: 368 PAEY-RKMFDRLSVFP---PSAHIPTIL----L--SLIWFDVIKSDVM---VVVNKLHKY 414

Query: 221 GLFN-----NTYEVHTPLCSAQA-LDQLLAIH 246
            L       +T  + +     +  L+   A+H
Sbjct: 415 SLVEKQPKESTISIPSIYLELKVKLENEYALH 446


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 34.6 bits (79), Expect = 0.032
 Identities = 30/124 (24%), Positives = 44/124 (35%), Gaps = 33/124 (26%)

Query: 143 PTTIVH-KIN-----PMSPLYTLSAADMLRERFEIVVILEGVIESTGMTTQARSSYLPNE 196
           P T+ H  +      P +  +    A  L+E+F    IL    E      +  +   P E
Sbjct: 8   PLTLSHGSLEHVLLVP-TASF--FIASQLQEQF--NKILPEPTEGFAADDEPTT---PAE 59

Query: 197 ILWGHRFETLVSFKKETGE----HEV-NYGL--FNNTY----EVHTPLCSAQALDQLLAI 245
            L G +F   VS   E  +     +V N  L  F N Y    ++H           LL  
Sbjct: 60  -LVG-KFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAK------LLQE 111

Query: 246 HGTT 249
           + TT
Sbjct: 112 NDTT 115


>1xes_A Dihydropinosylvin synthase; native structure, transferase; HET:
           3IO; 1.70A {Pinus sylvestris} PDB: 1xet_A* 1u0u_A
          Length = 413

 Score = 27.3 bits (60), Expect = 5.2
 Identities = 11/63 (17%), Positives = 19/63 (30%), Gaps = 7/63 (11%)

Query: 189 RSSYLPNEILWGHRFETLVSFKKETGEHEVNYGLFNNTYEVHTPLCSAQALDQLLAIHGT 248
           R  YL  EIL  +                           +  P  + +A ++ +   G 
Sbjct: 90  RYMYLTEEILKKNPDVCAFVEVPSLDAR-------QAMLAMEVPRLAKEAAEKAIQEWGQ 142

Query: 249 TKS 251
           +KS
Sbjct: 143 SKS 145


>1vpy_A Protein (hypothetical protein EF0366); TIM alpha/beta barrel fold,
           structural genomics, joint cente structural genomics,
           JCSG; 2.52A {Enterococcus faecalis} SCOP: c.1.32.1 PDB:
           1ztv_A
          Length = 289

 Score = 26.5 bits (58), Expect = 9.2
 Identities = 5/27 (18%), Positives = 11/27 (40%), Gaps = 1/27 (3%)

Query: 220 YGLFNNTYEVHTPLCSAQALDQLLAIH 246
             +FNN         +A  + ++L + 
Sbjct: 252 GVIFNNNSGGDAAE-NALQMQKVLNLS 277


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.322    0.137    0.401 

Gapped
Lambda     K      H
   0.267   0.0839    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,750,014
Number of extensions: 220714
Number of successful extensions: 390
Number of sequences better than 10.0: 1
Number of HSP's gapped: 368
Number of HSP's successfully gapped: 23
Length of query: 253
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 162
Effective length of database: 4,160,982
Effective search space: 674079084
Effective search space used: 674079084
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.1 bits)